Query 008286
Match_columns 571
No_of_seqs 292 out of 1286
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 21:53:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01697 Glyco_transf_92: Glyc 99.9 1.9E-25 4.1E-30 227.2 17.5 199 289-494 2-237 (285)
2 PF13704 Glyco_tranf_2_4: Glyc 99.7 4.4E-17 9.6E-22 140.7 9.1 95 299-402 1-97 (97)
3 cd02511 Beta4Glucosyltransfera 99.5 5.5E-13 1.2E-17 132.2 17.5 187 292-520 2-192 (229)
4 KOG4735 Extracellular protein 98.8 3.7E-10 8.1E-15 124.1 -2.2 272 190-492 109-410 (472)
5 PF00535 Glycos_transf_2: Glyc 98.6 8.5E-07 1.8E-11 80.3 13.6 104 293-405 1-106 (169)
6 COG0463 WcaA Glycosyltransfera 98.3 3.4E-06 7.3E-11 75.8 10.3 95 289-386 2-98 (291)
7 PRK10063 putative glycosyl tra 98.3 1.1E-05 2.4E-10 81.8 14.9 92 291-386 2-98 (248)
8 cd04196 GT_2_like_d Subfamily 98.3 8E-06 1.7E-10 78.2 12.9 92 293-386 1-95 (214)
9 cd06439 CESA_like_1 CESA_like_ 98.3 1.5E-05 3.2E-10 79.1 14.6 95 287-385 26-124 (251)
10 PRK10073 putative glycosyl tra 98.2 2.1E-05 4.5E-10 83.1 14.4 94 290-386 6-101 (328)
11 cd06427 CESA_like_2 CESA_like_ 98.2 1.9E-05 4E-10 78.6 13.2 94 291-386 2-100 (241)
12 cd06433 GT_2_WfgS_like WfgS an 98.2 3.4E-05 7.4E-10 72.5 13.5 89 293-386 1-91 (202)
13 cd04179 DPM_DPG-synthase_like 98.1 1.9E-05 4.2E-10 74.0 11.0 89 295-385 2-94 (185)
14 PRK11204 N-glycosyltransferase 98.1 2.8E-05 6E-10 84.0 13.4 115 289-412 53-169 (420)
15 cd04185 GT_2_like_b Subfamily 98.1 2.8E-05 6.1E-10 74.5 12.1 91 295-386 2-95 (202)
16 cd06421 CESA_CelA_like CESA_Ce 98.1 5.4E-05 1.2E-09 73.7 14.0 112 291-412 2-119 (234)
17 cd04195 GT2_AmsE_like GT2_AmsE 98.1 4.4E-05 9.5E-10 72.9 13.1 90 294-386 2-96 (201)
18 cd04188 DPG_synthase DPG_synth 98.1 3.1E-05 6.7E-10 75.1 11.8 90 295-386 2-98 (211)
19 cd06423 CESA_like CESA_like is 98.1 5.4E-05 1.2E-09 68.3 12.5 89 295-385 2-93 (180)
20 cd06442 DPM1_like DPM1_like re 98.1 2.2E-05 4.7E-10 76.1 10.2 89 295-385 2-93 (224)
21 TIGR03111 glyc2_xrt_Gpos1 puta 98.1 4.1E-05 8.8E-10 83.9 13.3 96 288-385 47-146 (439)
22 cd06434 GT2_HAS Hyaluronan syn 98.1 5.1E-05 1.1E-09 74.2 12.8 91 292-386 2-93 (235)
23 PLN02726 dolichyl-phosphate be 98.0 4.7E-05 1E-09 76.0 12.0 96 288-385 7-108 (243)
24 cd04186 GT_2_like_c Subfamily 98.0 9E-05 2E-09 67.5 12.7 87 295-386 2-90 (166)
25 TIGR03469 HonB hopene-associat 98.0 4.9E-05 1.1E-09 81.8 12.4 98 288-385 38-148 (384)
26 cd04184 GT2_RfbC_Mx_like Myxoc 98.0 8.4E-05 1.8E-09 70.8 12.7 93 291-385 2-98 (202)
27 cd06437 CESA_CaSu_A2 Cellulose 98.0 8.3E-05 1.8E-09 73.2 12.6 114 291-415 2-124 (232)
28 cd02525 Succinoglycan_BP_ExoA 98.0 6.6E-05 1.4E-09 73.5 11.9 91 292-385 2-96 (249)
29 cd06438 EpsO_like EpsO protein 97.9 0.00014 3E-09 69.2 12.8 89 295-386 2-97 (183)
30 PTZ00260 dolichyl-phosphate be 97.9 9.6E-05 2.1E-09 78.3 12.5 98 287-386 67-178 (333)
31 cd06436 GlcNAc-1-P_transferase 97.9 0.00017 3.6E-09 69.5 13.0 112 295-415 2-126 (191)
32 PRK10714 undecaprenyl phosphat 97.9 0.0001 2.3E-09 77.7 12.1 96 289-386 5-106 (325)
33 PRK14583 hmsR N-glycosyltransf 97.9 0.00015 3.3E-09 79.5 13.6 114 289-414 74-192 (444)
34 cd04192 GT_2_like_e Subfamily 97.9 0.00014 3E-09 70.3 11.7 89 295-385 2-97 (229)
35 cd02510 pp-GalNAc-T pp-GalNAc- 97.8 0.00017 3.6E-09 74.4 12.3 91 293-385 1-98 (299)
36 cd02526 GT2_RfbF_like RfbF is 97.8 0.00014 3E-09 71.2 10.9 86 296-385 3-90 (237)
37 cd06913 beta3GnTL1_like Beta 1 97.8 0.00014 3E-09 70.9 10.4 90 295-386 2-100 (219)
38 PRK10018 putative glycosyl tra 97.8 0.00044 9.5E-09 71.7 14.5 94 289-386 4-101 (279)
39 cd06435 CESA_NdvC_like NdvC_li 97.8 0.0002 4.4E-09 70.2 11.6 93 293-385 1-99 (236)
40 cd04187 DPM1_like_bac Bacteria 97.7 0.00018 3.8E-09 67.9 9.3 89 295-385 2-95 (181)
41 PRK13915 putative glucosyl-3-p 97.7 0.00026 5.6E-09 74.3 11.4 96 288-385 29-131 (306)
42 cd02520 Glucosylceramide_synth 97.7 0.00043 9.4E-09 66.6 11.5 93 291-385 2-101 (196)
43 cd06420 GT2_Chondriotin_Pol_N 97.6 0.00091 2E-08 62.6 13.0 89 295-385 2-94 (182)
44 TIGR03472 HpnI hopanoid biosyn 97.5 0.0007 1.5E-08 72.5 12.2 95 289-385 40-141 (373)
45 PF13641 Glyco_tranf_2_3: Glyc 97.5 0.00036 7.8E-09 68.0 8.1 111 291-415 2-123 (228)
46 cd00761 Glyco_tranf_GTA_type G 97.4 0.0026 5.6E-08 55.8 12.2 90 295-386 2-93 (156)
47 cd02522 GT_2_like_a GT_2_like_ 97.4 0.0021 4.5E-08 62.1 11.9 85 292-385 1-87 (221)
48 PRK11498 bcsA cellulose syntha 97.1 0.0047 1E-07 73.0 12.9 115 290-418 260-380 (852)
49 TIGR01556 rhamnosyltran L-rham 97.1 0.0038 8.2E-08 63.6 10.7 83 298-385 2-88 (281)
50 COG1216 Predicted glycosyltran 96.6 0.024 5.1E-07 59.1 12.7 94 290-385 3-99 (305)
51 COG1215 Glycosyltransferases, 96.5 0.019 4.2E-07 61.8 11.0 103 290-405 54-162 (439)
52 PRK14716 bacteriophage N4 adso 96.5 0.038 8.2E-07 62.1 13.5 98 289-386 65-174 (504)
53 TIGR03030 CelA cellulose synth 96.4 0.025 5.3E-07 66.1 12.5 116 290-416 131-267 (713)
54 PF06306 CgtA: Beta-1,4-N-acet 96.3 0.018 3.9E-07 60.4 9.0 123 287-419 84-215 (347)
55 PRK05454 glucosyltransferase M 95.7 0.11 2.4E-06 60.5 13.2 119 288-417 122-260 (691)
56 cd04190 Chitin_synth_C C-termi 95.3 0.092 2E-06 52.7 9.4 98 294-416 1-112 (244)
57 cd04191 Glucan_BSP_ModH Glucan 95.2 0.24 5.2E-06 50.7 12.1 119 293-419 2-137 (254)
58 PF10111 Glyco_tranf_2_2: Glyc 93.5 1.1 2.4E-05 46.2 12.7 90 294-386 2-104 (281)
59 KOG2977 Glycosyltransferase [G 93.3 0.56 1.2E-05 48.9 9.9 96 287-384 64-171 (323)
60 KOG2978 Dolichol-phosphate man 92.5 1.2 2.6E-05 44.0 10.4 102 292-405 5-113 (238)
61 cd02514 GT13_GLCNAC-TI GT13_GL 91.2 2.7 5.8E-05 45.1 12.3 114 292-414 2-137 (334)
62 PRK11234 nfrB bacteriophage N4 90.7 1.7 3.8E-05 51.1 11.2 98 288-386 61-171 (727)
63 PF03452 Anp1: Anp1; InterPro 88.1 9.9 0.00022 39.6 13.2 110 287-405 22-168 (269)
64 PF04724 Glyco_transf_17: Glyc 70.2 69 0.0015 34.8 12.8 114 290-419 79-219 (356)
65 PF11735 CAP59_mtransfer: Cryp 69.0 11 0.00023 38.7 6.0 33 307-339 22-56 (241)
66 PRK15489 nfrB bacteriophage N4 67.9 39 0.00086 39.9 11.0 98 289-386 70-179 (703)
67 cd02515 Glyco_transf_6 Glycosy 67.6 30 0.00066 36.1 8.9 109 287-404 31-151 (271)
68 COG2943 MdoH Membrane glycosyl 64.9 48 0.001 37.9 10.3 117 288-413 142-276 (736)
69 cd04181 NTP_transferase NTP_tr 56.7 1.2E+02 0.0026 29.0 10.7 81 303-385 30-110 (217)
70 PF03314 DUF273: Protein of un 54.2 22 0.00048 35.9 5.0 43 361-413 31-74 (222)
71 KOG4735 Extracellular protein 49.6 27 0.00059 38.7 5.5 96 314-416 143-260 (472)
72 PF09488 Osmo_MPGsynth: Mannos 45.9 1.3E+02 0.0027 32.9 9.3 114 291-418 51-204 (381)
73 PF02485 Branch: Core-2/I-Bran 45.5 2.7E+02 0.0059 27.6 11.5 104 293-406 2-116 (244)
74 cd01175 IPT_COE IPT domain of 44.7 64 0.0014 27.9 5.6 42 197-248 16-58 (85)
75 PRK14503 mannosyl-3-phosphogly 43.6 1.7E+02 0.0036 32.1 9.8 115 290-418 51-205 (393)
76 TIGR02460 osmo_MPGsynth mannos 42.1 1.8E+02 0.0039 31.7 9.7 115 290-418 50-204 (381)
77 PF13712 Glyco_tranf_2_5: Glyc 41.4 80 0.0017 31.5 6.9 48 358-413 44-91 (217)
78 cd02540 GT2_GlmU_N_bac N-termi 41.3 1.5E+02 0.0033 28.7 8.8 77 303-384 27-103 (229)
79 cd03174 DRE_TIM_metallolyase D 38.6 2.6E+02 0.0057 27.9 10.2 89 294-386 69-175 (265)
80 cd06915 NTP_transferase_WcbM_l 36.7 3.8E+02 0.0082 25.5 11.1 78 304-383 31-108 (223)
81 PF12804 NTP_transf_3: MobA-li 35.2 2.4E+02 0.0052 25.7 8.7 86 303-404 25-110 (160)
82 PF00682 HMGL-like: HMGL-like 34.1 4.7E+02 0.01 25.8 11.4 107 304-417 68-190 (237)
83 cd04182 GT_2_like_f GT_2_like_ 32.8 2.6E+02 0.0055 25.8 8.5 86 305-404 29-115 (186)
84 KOG3737 Predicted polypeptide 31.4 1.8E+02 0.0038 32.3 7.7 94 286-384 151-254 (603)
85 PRK14502 bifunctional mannosyl 31.0 2.7E+02 0.0059 33.0 9.8 115 290-418 55-209 (694)
86 TIGR03202 pucB xanthine dehydr 29.7 3.5E+02 0.0076 25.6 9.0 91 304-404 28-120 (190)
87 TIGR03552 F420_cofC 2-phospho- 27.7 5.3E+02 0.012 24.4 10.3 84 314-414 42-125 (195)
88 KOG0520 Uncharacterized conser 27.0 84 0.0018 38.3 4.9 57 194-264 417-473 (975)
89 TIGR03310 matur_ygfJ molybdenu 26.7 4.2E+02 0.0091 24.7 8.9 86 304-404 26-114 (188)
90 PF13727 CoA_binding_3: CoA-bi 25.6 1.3E+02 0.0027 27.6 5.0 43 303-348 131-174 (175)
91 PF08865 DUF1830: Domain of un 25.5 69 0.0015 26.6 2.8 28 88-115 15-42 (68)
92 PF00834 Ribul_P_3_epim: Ribul 23.7 3.8E+02 0.0083 26.6 8.2 82 288-380 56-137 (201)
93 PF03414 Glyco_transf_6: Glyco 23.3 2.8E+02 0.0061 30.0 7.5 96 287-386 96-204 (337)
94 PF01833 TIG: IPT/TIG domain; 22.0 1.3E+02 0.0028 24.1 3.9 57 197-264 16-72 (85)
95 PRK14360 glmU bifunctional N-a 21.8 4.6E+02 0.01 28.5 9.2 78 303-384 30-107 (450)
96 cd02516 CDP-ME_synthetase CDP- 21.2 7.3E+02 0.016 23.7 9.9 91 303-405 29-121 (218)
97 cd02517 CMP-KDO-Synthetase CMP 20.9 6.5E+02 0.014 24.6 9.3 76 304-385 28-105 (239)
98 cd04194 GT8_A4GalT_like A4GalT 20.3 3.7E+02 0.0081 26.7 7.5 68 318-385 31-110 (248)
99 PRK14353 glmU bifunctional N-a 20.1 4.7E+02 0.01 28.4 8.9 80 303-385 34-114 (446)
No 1
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=99.93 E-value=1.9e-25 Score=227.19 Aligned_cols=199 Identities=28% Similarity=0.485 Sum_probs=150.4
Q ss_pred CceEEEEEEecchHH--HHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecC---------------
Q 008286 289 KSEICVCTMVYNVAK--FVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWI--------------- 351 (571)
Q Consensus 289 k~~IcVctivkNEa~--~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp--------------- 351 (571)
++.+|+.++++||.+ .|.|||+||+++|+++|+||++++++.+.++|+.|.+.|. |++++|+
T Consensus 2 ~~~vCv~pl~~~~~~~~~l~e~ie~~~~~G~~~~~~Y~~~~~~~~~~vL~~Y~~~g~-v~~~~w~~~~~~~~~~~~~~~~ 80 (285)
T PF01697_consen 2 DFVVCVSPLFGNEDDWLQLIEWIEYHRLLGVDHFYFYDNSSSPSVRKVLKEYERSGY-VEVIPWPLRPKFPDFPSPFPDP 80 (285)
T ss_pred cEEEEccchhcccccHHHHHHHHHHHHHhCCCEEEEEEccCCHHHHHhHHHHhhcCe-EEEEEcccccccCCcccchhhh
Confidence 456788889999965 8999999999999999999999999999999999999998 9999997
Q ss_pred ----CchhHHHHHHHHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccC--CccEEEEEeeee-----cC
Q 008286 352 ----WPKTQEAGFSHNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLH--SIGQVSIRCLDF-----GP 420 (571)
Q Consensus 352 ----~~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p--~i~~i~~~w~~F-----g~ 420 (571)
+..+|..+++||++|++..++||+|+|+||||+|... +....++.++++..+ .++.+.+....+ ++
T Consensus 81 ~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (285)
T PF01697_consen 81 NSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNA---PTYPEEFEDLLREFPNISAGAYSFRNSWFYKYEFGP 157 (285)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccc---cchhhHHHHHHhhccccceEEEEEeEEEEEecccCc
Confidence 1247899999999999999999999999999999853 223478889988874 455555544433 33
Q ss_pred CCccccCCCCccccccccccccc------CCCceEEEeCCceeccccccceeee-ecC--CceeeeecCceeEEEecccC
Q 008286 421 SGQKSHPIEGVTQGYNCQRWDVS------QQRHKSMVLLEAIDDSLDNVVHHFR-LKN--TFQWRELSMSSALVNHYKYQ 491 (571)
Q Consensus 421 sg~~~~p~~~vi~~yt~R~~~~~------~~r~KsIVRP~~V~~sl~n~VHh~~-l~~--g~~~~~V~~~~a~I~HYr~r 491 (571)
++....+.+.+...+.++..+.. ..+.|+||||+.|..+ ++|+.. ... +.....++...|.|+||+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~IvrP~~v~~~---~~H~~~~~~~~~~~~~~~v~~~~~~i~HYr~~ 234 (285)
T PF01697_consen 158 SFYESSPSQLVSSLYFKRFRKTGVKKTRPGHRSKSIVRPEKVNSM---GIHHPWKFYNSSGYKILHVPPEIALINHYRDK 234 (285)
T ss_pred cccccchHHhhhcceeeeecccccccccccccceeecChhHeEEE---ecccceeecCCCCceEEEeCcceEEEeccccC
Confidence 33222232333333333332111 1236999999999876 577663 233 56667788999999999998
Q ss_pred CHH
Q 008286 492 AWS 494 (571)
Q Consensus 492 S~e 494 (571)
++.
T Consensus 235 ~~~ 237 (285)
T PF01697_consen 235 SWP 237 (285)
T ss_pred ccc
Confidence 844
No 2
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=99.70 E-value=4.4e-17 Score=140.69 Aligned_cols=95 Identities=26% Similarity=0.537 Sum_probs=73.0
Q ss_pred cchHHHHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCC--chhHHHHHHHHHHHhcCCCcEEEE
Q 008286 299 YNVAKFVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIW--PKTQEAGFSHNAIHAKHSCKWMLY 376 (571)
Q Consensus 299 kNEa~~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~--~~~Q~aa~ndcl~r~~~~~dWVlf 376 (571)
|||+.+|.+||+||+.+|+++|+||||+|+|+|.++|+.+.+.++ .....+. ...|....+.|+. .....+|+++
T Consensus 1 rne~~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~~~v~i--~~~~~~~~~~~~~~~~~~~~~~-~~~~~dWvl~ 77 (97)
T PF13704_consen 1 RNEADYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRALPGVGI--IRWVDPYRDERRQRAWRNALIE-RAFDADWVLF 77 (97)
T ss_pred CChHHHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhCCCcEE--EEeCCCccchHHHHHHHHHHHH-hCCCCCEEEE
Confidence 799999999999999999999999999999999999999965433 2222333 2344444455544 4468899999
Q ss_pred ecCCceeecCCCCCCCCcHHHHHHhh
Q 008286 377 IDVDEFVYSPSWHDSGPSKHLLKALI 402 (571)
Q Consensus 377 iDaDEfL~p~~~~~~~~~~~~L~dlL 402 (571)
+|+|||+.++.. ..+|+++|
T Consensus 78 ~D~DEfl~~~~~------~~~l~~~L 97 (97)
T PF13704_consen 78 LDADEFLVPPPG------RRSLRDFL 97 (97)
T ss_pred EeeeEEEecCCC------CCCHHHhC
Confidence 999999999732 25677765
No 3
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.51 E-value=5.5e-13 Score=132.20 Aligned_cols=187 Identities=18% Similarity=0.167 Sum_probs=115.8
Q ss_pred EEEEEEecchHHHHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCCC
Q 008286 292 ICVCTMVYNVAKFVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHSC 371 (571)
Q Consensus 292 IcVctivkNEa~~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~ 371 (571)
|+|+++++||+..|.++|+.-..+ .++|+|+|++|+|+|.++++.+. ..|....|.+.+.| .|.++. ....
T Consensus 2 isvii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~~~---~~v~~~~~~g~~~~---~n~~~~--~a~~ 72 (229)
T cd02511 2 LSVVIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKEYG---AKVYQRWWDGFGAQ---RNFALE--LATN 72 (229)
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHHcC---CEEEECCCCChHHH---HHHHHH--hCCC
Confidence 788899999999999999985332 38999999999999999999763 33443344444444 354443 3467
Q ss_pred cEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEEEEeeeecCCCccccCC---CCcccccccccccccCCCce
Q 008286 372 KWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVSIRCLDFGPSGQKSHPI---EGVTQGYNCQRWDVSQQRHK 448 (571)
Q Consensus 372 dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~~~w~~Fg~sg~~~~p~---~~vi~~yt~R~~~~~~~r~K 448 (571)
+||+++|+||++.+. ....+.+.+.+.+. ..+.+.......+......+ ....+.|. +.+
T Consensus 73 d~vl~lDaD~~~~~~-------~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~---------~~~ 135 (229)
T cd02511 73 DWVLSLDADERLTPE-------LADEILALLATDDY-DGYYVPRRNFFLGRWIRHGGWYPDRQLRLFR---------RGK 135 (229)
T ss_pred CEEEEEeCCcCcCHH-------HHHHHHHHHhCCCC-cEEEEEEEEEEcCeeeecCCCCCCceEEEEE---------CCC
Confidence 899999999999874 34556666665443 44555544443332222111 11111111 112
Q ss_pred EEEeCCceeccccccceeeeecCCceeeeecC-ceeEEEecccCCHHHHHHHHhhchhhHHHHHHHHcCCCCC
Q 008286 449 SMVLLEAIDDSLDNVVHHFRLKNTFQWRELSM-SSALVNHYKYQAWSEFKTKFRRRVSAYVADWRDATNPNSK 520 (571)
Q Consensus 449 sIVRP~~V~~sl~n~VHh~~l~~g~~~~~V~~-~~a~I~HYr~rS~e~f~~K~~Rr~s~y~~dw~~~~n~~~k 520 (571)
..+... .+|......+. +.. ..+.+.||.+.+.+.+..|.+| |...++.+...++|
T Consensus 136 ~~~~~~--------~vhe~~~~~~~----~~~~~~~~~~H~~~~~~~~~~~K~~r----y~~~~a~~~~~~~~ 192 (229)
T cd02511 136 ARFEDG--------RVHEQVVVDGG----VGIVLKGDILHYGYKSLEEFLEKHNR----YSSLEAKDLAAKGK 192 (229)
T ss_pred eEECCC--------cccceEEeCCC----eeecCCCceeCCCCCCHHHHHHHHHH----HHHHHHHHHHHcCC
Confidence 222212 24443322221 112 5678999999999999999999 76666655544444
No 4
>KOG4735 consensus Extracellular protein with conserved cysteines [Function unknown]
Probab=98.81 E-value=3.7e-10 Score=124.11 Aligned_cols=272 Identities=10% Similarity=0.033 Sum_probs=159.8
Q ss_pred EEEecCCceEEEEEEeecCCCCCCCCCCceEEEEeec-------ccccceeeceeeEEcCCCCCCCCCCCCCCCeEEEEE
Q 008286 190 ESISTEDDVVLFVKGVNARSRSRSPQPQDFMCVFGDA-------VKTPVTSCTQEVFRCSHPELTAFTSGTDQPIKMSLQ 262 (571)
Q Consensus 190 ~a~~~~~~~vv~v~gi~~r~~~~~~~~~~~~C~f~~~-------~~t~~~~~~q~vi~C~~P~~~~~~~~~~~~i~VSl~ 262 (571)
.|+...+..+|..+. +..++|+++++ ....++..+..++.|+-. .. .+.++++
T Consensus 109 ~a~~~~~~~vv~~~s-----------p~~v~~~w~d~~~~~~~~~~~~s~~~~~~~vs~~~~--~~-------~~~~~~~ 168 (472)
T KOG4735|consen 109 SARYSAPKPVVVCIS-----------PQFVYEQWQDFLRQEHVSKRFGATHLHLYVVSCPES--YF-------ALLKEYE 168 (472)
T ss_pred ccccCCCCcEEEEec-----------chHHHhhHHhhhhheehhhhcCCeeEEEEEEEehHH--HH-------HHHHHHH
Confidence 356666654444443 24599998872 234444567789999933 32 2222233
Q ss_pred Eecc--cccccccceeeecCCCCCCCCCCceEEEEEEecchHHHHHHHHHHhhhcCc-cEEEEE-EcCCChhHHHHHHhh
Q 008286 263 IMHQ--VQNRTLPSVAYYRPRQSHAQEPKSEICVCTMVYNVAKFVKEWVIYHTKIGV-EKFILY-DNGSEDDLQNVVNEL 338 (571)
Q Consensus 263 ~~~~--~~~~~~P~v~~~~~~~~~~~~~k~~IcVctivkNEa~~L~EwIeyH~~lGv-d~f~IY-Dn~StD~t~eIL~~y 338 (571)
..+. .-...+|...+... .....++..+|+-.+++++.++|..|+|+++.+|+ +.+.|+ -.+.+++..++++.|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~--~p~~ep~~~vc~~~~~g~~~d~L~~~~E~~k~~g~~~~~di~~~~~~~~Y~~e~l~~y 246 (472)
T KOG4735|consen 169 KLGNYVTLPPWLPLKFRNTD--EPYHEPNLNVELRNQAGAETDCLLQYKEAAKFIGFFDLDDILIPRNANTYDEEFLREY 246 (472)
T ss_pred hcCCccccCCCcccccCCCC--CCccCcccceEecccchhhhhHHHHHHHHHHHhccccHhheeeeccCchHHHHHHHHh
Confidence 3210 00123333322211 11123447788888999999999889999999999 888888 667778999999999
Q ss_pred cCCCcEEEEEe-----cCC-chhHHHHHHHHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhcc--CCccE
Q 008286 339 NGDGYNVTTLL-----WIW-PKTQEAGFSHNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQL--HSIGQ 410 (571)
Q Consensus 339 ~~~G~~Vt~i~-----Wp~-~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~--p~i~~ 410 (571)
.+.|. ++.+. |.. ...|...+|||.+|++..++|++++|+||.+...+. ...++..++... +..+.
T Consensus 247 ~~~~~-v~~~~~~~~~~~~~~~~~~~~~~dC~~r~~~~s~~~~~~dide~~~~~~p-----~~~~~~~~~~~~~~~~~~~ 320 (472)
T KOG4735|consen 247 VGSGN-IEVIFYQKREHRTVKTWELLQFNDCSLRSLFSSKWSANTDIDEGKVVVRP-----ERLNSTWIHRSINNPKKAE 320 (472)
T ss_pred hcCCC-eeEEEeeeeeeeeeecccccccccccHHHHhhcceecccccccceeeccc-----cccceeeeeecccCCccce
Confidence 99886 55443 322 245668899999999999999999999999887642 112233333332 22332
Q ss_pred --EEEEeeeecCCCccccCCCC--cccccccc-cccc----c-CCCceEEEeCCceeccccccceee-eecCCceeeeec
Q 008286 411 --VSIRCLDFGPSGQKSHPIEG--VTQGYNCQ-RWDV----S-QQRHKSMVLLEAIDDSLDNVVHHF-RLKNTFQWRELS 479 (571)
Q Consensus 411 --i~~~w~~Fg~sg~~~~p~~~--vi~~yt~R-~~~~----~-~~r~KsIVRP~~V~~sl~n~VHh~-~l~~g~~~~~V~ 479 (571)
....|.........+...+. .......+ ..+. . ....|+|.++..|..+ .+|.. ...+|.....+.
T Consensus 321 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~K~i~~~~~v~~~---~~h~~~~~~~~~~~~~~~ 397 (472)
T KOG4735|consen 321 LLFVSSNVIIHKQLPAKFENGWLQLPEEMEFLKYNETSQPINPSDNLKCIDRDEKVRML---TIHEISKLLPGLPKTDVY 397 (472)
T ss_pred eEeeecceeEEeeccccccCcccccceeccceeccCcccccCcccccHHHHHHHHHHHh---cchHHHHHhcCCCccccc
Confidence 33355554333222222221 11111111 1110 1 2236999999987543 56665 234444334456
Q ss_pred CceeEEEecccCC
Q 008286 480 MSSALVNHYKYQA 492 (571)
Q Consensus 480 ~~~a~I~HYr~rS 492 (571)
...+.+.||+.-.
T Consensus 398 ~~i~~~~~yr~~~ 410 (472)
T KOG4735|consen 398 TPIVFKCYYRSFY 410 (472)
T ss_pred HHHHHHHhhhhhh
Confidence 6777888886533
No 5
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.61 E-value=8.5e-07 Score=80.27 Aligned_cols=104 Identities=18% Similarity=0.198 Sum_probs=76.2
Q ss_pred EEEEEecchHHHHHHHHHHhhhc--CccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCC
Q 008286 293 CVCTMVYNVAKFVKEWVIYHTKI--GVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHS 370 (571)
Q Consensus 293 cVctivkNEa~~L~EwIeyH~~l--Gvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~ 370 (571)
||++.++|++++|.++|+..+.+ ...+|+|+||+|+|++.++++.+.+.+..++++.-+...+...++|.++..+ .
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a--~ 78 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHA--K 78 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH----
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccccccccccccccccccccccccccccccccccc--c
Confidence 57788999999999999987776 4569999999999999999999976333477777666556666777777655 4
Q ss_pred CcEEEEecCCceeecCCCCCCCCcHHHHHHhhhcc
Q 008286 371 CKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQL 405 (571)
Q Consensus 371 ~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~ 405 (571)
.+|++++|.|.++.+. .-..+.+.+.+.
T Consensus 79 ~~~i~~ld~D~~~~~~-------~l~~l~~~~~~~ 106 (169)
T PF00535_consen 79 GEYILFLDDDDIISPD-------WLEELVEALEKN 106 (169)
T ss_dssp SSEEEEEETTEEE-TT-------HHHHHHHHHHHC
T ss_pred eeEEEEeCCCceEcHH-------HHHHHHHHHHhC
Confidence 4599999999999985 234455555543
No 6
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.34 E-value=3.4e-06 Score=75.76 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=72.8
Q ss_pred CceEEEEEEecchHHHHHHHHHHhhhcCcc--EEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHH
Q 008286 289 KSEICVCTMVYNVAKFVKEWVIYHTKIGVE--KFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIH 366 (571)
Q Consensus 289 k~~IcVctivkNEa~~L~EwIeyH~~lGvd--~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r 366 (571)
.+.++|++.++|+++.|.+.|+.-..+... +++|.|++|+|+|.++++.+.+....+.....+...+...+++..+..
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKDVRVIRLINERNGGLGAARNAGLEY 81 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhcceEEEeecccCCChHHHHHhhHHh
Confidence 367889999999999999999987665432 699999999999999999998753113333334455666677777665
Q ss_pred hcCCCcEEEEecCCceeecC
Q 008286 367 AKHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 367 ~~~~~dWVlfiDaDEfL~p~ 386 (571)
... +|++++|+|+. .+.
T Consensus 82 ~~~--~~~~~~d~d~~-~~~ 98 (291)
T COG0463 82 ARG--DYIVFLDADDQ-HPP 98 (291)
T ss_pred ccC--CEEEEEccCCC-CCH
Confidence 544 99999999999 775
No 7
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.33 E-value=1.1e-05 Score=81.78 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=69.0
Q ss_pred eEEEEEEecchHHHHHHHHHHhhhc----Cc-cEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHH
Q 008286 291 EICVCTMVYNVAKFVKEWVIYHTKI----GV-EKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAI 365 (571)
Q Consensus 291 ~IcVctivkNEa~~L~EwIeyH~~l----Gv-d~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~ 365 (571)
.++|++.++|+++.|.++|+.-..+ +. -+++|.|++|+|+|.++++.+.+.. .+.++.-+ ..+...+.|..+.
T Consensus 2 ~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~-~i~~i~~~-~~G~~~A~N~Gi~ 79 (248)
T PRK10063 2 LLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIF-NLRFVSEP-DNGIYDAMNKGIA 79 (248)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccC-CEEEEECC-CCCHHHHHHHHHH
Confidence 6889999999999999998885421 22 3799999999999999999986432 24444323 3355566776665
Q ss_pred HhcCCCcEEEEecCCceeecC
Q 008286 366 HAKHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 366 r~~~~~dWVlfiDaDEfL~p~ 386 (571)
.+ ..+||+++|+|.++.+.
T Consensus 80 ~a--~g~~v~~ld~DD~~~~~ 98 (248)
T PRK10063 80 MA--QGRFALFLNSGDIFHQD 98 (248)
T ss_pred Hc--CCCEEEEEeCCcccCcC
Confidence 44 57999999999999874
No 8
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.32 E-value=8e-06 Score=78.15 Aligned_cols=92 Identities=15% Similarity=0.200 Sum_probs=67.4
Q ss_pred EEEEEecchHHHHHHHHHHhhhcCc--cEEEEEEcCCChhHHHHHHhhcCCC-cEEEEEecCCchhHHHHHHHHHHHhcC
Q 008286 293 CVCTMVYNVAKFVKEWVIYHTKIGV--EKFILYDNGSEDDLQNVVNELNGDG-YNVTTLLWIWPKTQEAGFSHNAIHAKH 369 (571)
Q Consensus 293 cVctivkNEa~~L~EwIeyH~~lGv--d~f~IYDn~StD~t~eIL~~y~~~G-~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~ 369 (571)
+|++.++|++++|.++|+.-..+-. -+++|.|++|+|+|.++++.+.++. ..+..+.-....+...++|.++. ..
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~--~~ 78 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQ--AA 78 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHH--hC
Confidence 3667789999999999998655432 3899999999999999999997653 12444433334444455565543 35
Q ss_pred CCcEEEEecCCceeecC
Q 008286 370 SCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 370 ~~dWVlfiDaDEfL~p~ 386 (571)
..+||+++|.|.++.|.
T Consensus 79 ~g~~v~~ld~Dd~~~~~ 95 (214)
T cd04196 79 DGDYVFFCDQDDIWLPD 95 (214)
T ss_pred CCCEEEEECCCcccChh
Confidence 78999999999998863
No 9
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=98.29 E-value=1.5e-05 Score=79.12 Aligned_cols=95 Identities=13% Similarity=0.188 Sum_probs=70.5
Q ss_pred CCCceEEEEEEecchHHHHHHHHHHhhhcCc----cEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHH
Q 008286 287 EPKSEICVCTMVYNVAKFVKEWVIYHTKIGV----EKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSH 362 (571)
Q Consensus 287 ~~k~~IcVctivkNEa~~L~EwIeyH~~lGv----d~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~nd 362 (571)
.....++|+..++||+..|.++|+.-..+-. -+++|.|++|+|++.++++.+.+. .+.++.-+...+...+.|.
T Consensus 26 ~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~v~~i~~~~~~g~~~a~n~ 103 (251)
T cd06439 26 AYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK--GVKLLRFPERRGKAAALNR 103 (251)
T ss_pred CCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC--cEEEEEcCCCCChHHHHHH
Confidence 3455799999999999999999988544321 279999999999999999999765 2444433333344455666
Q ss_pred HHHHhcCCCcEEEEecCCceeec
Q 008286 363 NAIHAKHSCKWMLYIDVDEFVYS 385 (571)
Q Consensus 363 cl~r~~~~~dWVlfiDaDEfL~p 385 (571)
++..+ ..|||+++|+|.++.+
T Consensus 104 gi~~a--~~d~i~~lD~D~~~~~ 124 (251)
T cd06439 104 ALALA--TGEIVVFTDANALLDP 124 (251)
T ss_pred HHHHc--CCCEEEEEccccCcCH
Confidence 66544 4599999999999975
No 10
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.21 E-value=2.1e-05 Score=83.05 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=73.5
Q ss_pred ceEEEEEEecchHHHHHHHHHHhhhcCc--cEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHh
Q 008286 290 SEICVCTMVYNVAKFVKEWVIYHTKIGV--EKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHA 367 (571)
Q Consensus 290 ~~IcVctivkNEa~~L~EwIeyH~~lGv--d~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~ 367 (571)
..|+|++.++|++++|.++|+.-..+-. -+++|.|+||+|++.++++.|.+..-.|.++.- ...+...+.|.++..
T Consensus 6 p~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi~~-~n~G~~~arN~gl~~- 83 (328)
T PRK10073 6 PKLSIIIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRLLHQ-ANAGVSVARNTGLAV- 83 (328)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEC-CCCChHHHHHHHHHh-
Confidence 4689998899999999999998665533 389999999999999999999764333555543 345666677777654
Q ss_pred cCCCcEEEEecCCceeecC
Q 008286 368 KHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 368 ~~~~dWVlfiDaDEfL~p~ 386 (571)
...+||+|+|+|.++.|.
T Consensus 84 -a~g~yi~flD~DD~~~p~ 101 (328)
T PRK10073 84 -ATGKYVAFPDADDVVYPT 101 (328)
T ss_pred -CCCCEEEEECCCCccChh
Confidence 467999999999998874
No 11
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=98.21 E-value=1.9e-05 Score=78.60 Aligned_cols=94 Identities=10% Similarity=0.122 Sum_probs=69.0
Q ss_pred eEEEEEEecchHHHHHHHHHHhhhcCcc----EEEEEEcCCChhHHHHHHhhcCCC-cEEEEEecCCchhHHHHHHHHHH
Q 008286 291 EICVCTMVYNVAKFVKEWVIYHTKIGVE----KFILYDNGSEDDLQNVVNELNGDG-YNVTTLLWIWPKTQEAGFSHNAI 365 (571)
Q Consensus 291 ~IcVctivkNEa~~L~EwIeyH~~lGvd----~f~IYDn~StD~t~eIL~~y~~~G-~~Vt~i~Wp~~~~Q~aa~ndcl~ 365 (571)
.++|++-++||++.|.+.|+.-..+-.. +|+|+|++|+|+|.++++.+.... ..|..++-....++..+.|.++.
T Consensus 2 ~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~ 81 (241)
T cd06427 2 VYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALA 81 (241)
T ss_pred eEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHH
Confidence 4788888999999999999986554332 588899999999999999985422 22333222233456667777766
Q ss_pred HhcCCCcEEEEecCCceeecC
Q 008286 366 HAKHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 366 r~~~~~dWVlfiDaDEfL~p~ 386 (571)
.+ ..+||+++|+|-.+.+.
T Consensus 82 ~a--~gd~i~~~DaD~~~~~~ 100 (241)
T cd06427 82 FA--RGEYVVIYDAEDAPDPD 100 (241)
T ss_pred hc--CCCEEEEEcCCCCCChH
Confidence 43 56999999999998864
No 12
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.17 E-value=3.4e-05 Score=72.47 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=65.4
Q ss_pred EEEEEecchHHHHHHHHHHhhhcCcc--EEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCC
Q 008286 293 CVCTMVYNVAKFVKEWVIYHTKIGVE--KFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHS 370 (571)
Q Consensus 293 cVctivkNEa~~L~EwIeyH~~lGvd--~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~ 370 (571)
+|++.++|+++.|.++|+.-..+... +++|+||+|+|++.++++.+.... +.++. ....+-..+.|.++.. ..
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~~--~~~~~-~~~~g~~~a~n~~~~~--a~ 75 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDKI--TYWIS-EPDKGIYDAMNKGIAL--AT 75 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhhc--EEEEe-cCCcCHHHHHHHHHHH--cC
Confidence 35667899999999999987666554 799999999999999999987641 22222 2222334455666543 36
Q ss_pred CcEEEEecCCceeecC
Q 008286 371 CKWMLYIDVDEFVYSP 386 (571)
Q Consensus 371 ~dWVlfiDaDEfL~p~ 386 (571)
.+||+++|.|.++.+.
T Consensus 76 ~~~v~~ld~D~~~~~~ 91 (202)
T cd06433 76 GDIIGFLNSDDTLLPG 91 (202)
T ss_pred CCEEEEeCCCcccCch
Confidence 7999999999999985
No 13
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.13 E-value=1.9e-05 Score=74.00 Aligned_cols=89 Identities=18% Similarity=0.110 Sum_probs=67.6
Q ss_pred EEEecchHHHHHHHHHHhhhc----CccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCC
Q 008286 295 CTMVYNVAKFVKEWVIYHTKI----GVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHS 370 (571)
Q Consensus 295 ctivkNEa~~L~EwIeyH~~l----Gvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~ 370 (571)
++.++|+++.|.++|+....+ ...+++|.||+|+|++.++++.+.++...+..+..+...+...++|..+..+..
T Consensus 2 ii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~g- 80 (185)
T cd04179 2 VIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAARG- 80 (185)
T ss_pred eecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHhcC-
Confidence 456899999999999887766 367999999999999999999987654324444444444455666767665544
Q ss_pred CcEEEEecCCceeec
Q 008286 371 CKWMLYIDVDEFVYS 385 (571)
Q Consensus 371 ~dWVlfiDaDEfL~p 385 (571)
+|++++|.|..+.+
T Consensus 81 -d~i~~lD~D~~~~~ 94 (185)
T cd04179 81 -DIVVTMDADLQHPP 94 (185)
T ss_pred -CEEEEEeCCCCCCH
Confidence 99999999998865
No 14
>PRK11204 N-glycosyltransferase; Provisional
Probab=98.13 E-value=2.8e-05 Score=83.99 Aligned_cols=115 Identities=13% Similarity=0.188 Sum_probs=81.5
Q ss_pred CceEEEEEEecchHHHHHHHHHHhhhcCc--cEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHH
Q 008286 289 KSEICVCTMVYNVAKFVKEWVIYHTKIGV--EKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIH 366 (571)
Q Consensus 289 k~~IcVctivkNEa~~L~EwIeyH~~lGv--d~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r 366 (571)
...++|++.++||+..|.++|+.-..+.. -+++|.|++|+|+|.++++.+.+...+++.+..+...+...+.|.++..
T Consensus 53 ~p~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g~~~ 132 (420)
T PRK11204 53 YPGVSILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALNTGAAA 132 (420)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34688888899999999999998555432 3899999999999999999886643335555544444555667776654
Q ss_pred hcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEE
Q 008286 367 AKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVS 412 (571)
Q Consensus 367 ~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~ 412 (571)
...||++++|+|..+.+. .-..+.+.+.+.|+++.+.
T Consensus 133 --a~~d~i~~lDaD~~~~~d-------~L~~l~~~~~~~~~v~~v~ 169 (420)
T PRK11204 133 --ARSEYLVCIDGDALLDPD-------AAAYMVEHFLHNPRVGAVT 169 (420)
T ss_pred --cCCCEEEEECCCCCCChh-------HHHHHHHHHHhCCCeEEEE
Confidence 468999999999987653 2233334444456676664
No 15
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.12 E-value=2.8e-05 Score=74.48 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=67.1
Q ss_pred EEEecchHHHHHHHHHHhhhcC--ccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHh-cCCC
Q 008286 295 CTMVYNVAKFVKEWVIYHTKIG--VEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHA-KHSC 371 (571)
Q Consensus 295 ctivkNEa~~L~EwIeyH~~lG--vd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~-~~~~ 371 (571)
++.++|+++.|.++|+.-..+- -.+++|+|++|+|+|.++++.+.+.- .+..+..+...+...++|.++..+ ....
T Consensus 2 iI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~-~i~~~~~~~n~g~~~~~n~~~~~a~~~~~ 80 (202)
T cd04185 2 VVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLD-NIVYLRLPENLGGAGGFYEGVRRAYELGY 80 (202)
T ss_pred EEEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCC-ceEEEECccccchhhHHHHHHHHHhccCC
Confidence 4568899999999999865542 24899999999999999999986542 144444444444445566666544 3478
Q ss_pred cEEEEecCCceeecC
Q 008286 372 KWMLYIDVDEFVYSP 386 (571)
Q Consensus 372 dWVlfiDaDEfL~p~ 386 (571)
+|++++|.|..+.+.
T Consensus 81 d~v~~ld~D~~~~~~ 95 (202)
T cd04185 81 DWIWLMDDDAIPDPD 95 (202)
T ss_pred CEEEEeCCCCCcChH
Confidence 999999999998763
No 16
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=98.11 E-value=5.4e-05 Score=73.70 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=74.6
Q ss_pred eEEEEEEecchH-HHHHHHHHHhhhcCcc----EEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCC-chhHHHHHHHHH
Q 008286 291 EICVCTMVYNVA-KFVKEWVIYHTKIGVE----KFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIW-PKTQEAGFSHNA 364 (571)
Q Consensus 291 ~IcVctivkNEa-~~L~EwIeyH~~lGvd----~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~-~~~Q~aa~ndcl 364 (571)
.++|++.++||+ ..|.++|+.-..+-.. +++|.||+|+|++.++++.+...- .+.++.-+. .+....++|.++
T Consensus 2 ~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~n~~~ 80 (234)
T cd06421 2 TVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEY-GYRYLTRPDNRHAKAGNLNNAL 80 (234)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhccc-CceEEEeCCCCCCcHHHHHHHH
Confidence 478888899975 6789999987665442 799999999999999999986531 122222121 222334467776
Q ss_pred HHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEE
Q 008286 365 IHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVS 412 (571)
Q Consensus 365 ~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~ 412 (571)
..+ .++|++++|.|.++.+. .-..+.+.+.+.++++.+.
T Consensus 81 ~~a--~~d~i~~lD~D~~~~~~-------~l~~l~~~~~~~~~~~~v~ 119 (234)
T cd06421 81 AHT--TGDFVAILDADHVPTPD-------FLRRTLGYFLDDPKVALVQ 119 (234)
T ss_pred HhC--CCCEEEEEccccCcCcc-------HHHHHHHHHhcCCCeEEEe
Confidence 543 78999999999999763 2233444444435555554
No 17
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.11 E-value=4.4e-05 Score=72.85 Aligned_cols=90 Identities=17% Similarity=0.264 Sum_probs=65.2
Q ss_pred EEEEecchH--HHHHHHHHHhhhcC--ccEEEEEEcCC-ChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhc
Q 008286 294 VCTMVYNVA--KFVKEWVIYHTKIG--VEKFILYDNGS-EDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAK 368 (571)
Q Consensus 294 VctivkNEa--~~L~EwIeyH~~lG--vd~f~IYDn~S-tD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~ 368 (571)
|++.++|++ .+|.++|+.-..+- -.+++|+|++| +|+|.++++.|.+..- +.++.-+...+-..+.|.++..+
T Consensus 2 viip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~-i~~i~~~~n~G~~~a~N~g~~~a- 79 (201)
T cd04195 2 VLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP-LKVVPLEKNRGLGKALNEGLKHC- 79 (201)
T ss_pred EEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC-eEEEEcCccccHHHHHHHHHHhc-
Confidence 455577775 58999999976653 35788888887 7899999999865422 44444344445556678777644
Q ss_pred CCCcEEEEecCCceeecC
Q 008286 369 HSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 369 ~~~dWVlfiDaDEfL~p~ 386 (571)
..+|++++|.|.++.+.
T Consensus 80 -~gd~i~~lD~Dd~~~~~ 96 (201)
T cd04195 80 -TYDWVARMDTDDISLPD 96 (201)
T ss_pred -CCCEEEEeCCccccCcH
Confidence 68999999999987763
No 18
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.09 E-value=3.1e-05 Score=75.10 Aligned_cols=90 Identities=17% Similarity=0.136 Sum_probs=64.9
Q ss_pred EEEecchHHHHHHHHHHhhhc------CccEEEEEEcCCChhHHHHHHhhcCC-CcEEEEEecCCchhHHHHHHHHHHHh
Q 008286 295 CTMVYNVAKFVKEWVIYHTKI------GVEKFILYDNGSEDDLQNVVNELNGD-GYNVTTLLWIWPKTQEAGFSHNAIHA 367 (571)
Q Consensus 295 ctivkNEa~~L~EwIeyH~~l------Gvd~f~IYDn~StD~t~eIL~~y~~~-G~~Vt~i~Wp~~~~Q~aa~ndcl~r~ 367 (571)
++.++||++.|.++|+.-..+ ...+++|+|++|+|+|.++++.+.+. +..+..+.-....+...+++..+..+
T Consensus 2 iip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a 81 (211)
T cd04188 2 VIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAA 81 (211)
T ss_pred EEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHh
Confidence 456899999999888875443 23589999999999999999998653 32234443333444556667666544
Q ss_pred cCCCcEEEEecCCceeecC
Q 008286 368 KHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 368 ~~~~dWVlfiDaDEfL~p~ 386 (571)
..+||+++|+|..+.+.
T Consensus 82 --~gd~i~~ld~D~~~~~~ 98 (211)
T cd04188 82 --RGDYILFADADLATPFE 98 (211)
T ss_pred --cCCEEEEEeCCCCCCHH
Confidence 45999999999987763
No 19
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.09 E-value=5.4e-05 Score=68.26 Aligned_cols=89 Identities=16% Similarity=0.152 Sum_probs=63.6
Q ss_pred EEEecchHHHHHHHHHHhhhcC--ccEEEEEEcCCChhHHHHHHhhcCCCc-EEEEEecCCchhHHHHHHHHHHHhcCCC
Q 008286 295 CTMVYNVAKFVKEWVIYHTKIG--VEKFILYDNGSEDDLQNVVNELNGDGY-NVTTLLWIWPKTQEAGFSHNAIHAKHSC 371 (571)
Q Consensus 295 ctivkNEa~~L~EwIeyH~~lG--vd~f~IYDn~StD~t~eIL~~y~~~G~-~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~ 371 (571)
++.++|+++.|.++|+....+. -.+++|.|++|+|++.++++.+...+. .+..+.-+...+...+.|..+.. ...
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~--~~~ 79 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRH--AKG 79 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHh--cCC
Confidence 4458899999999999877664 458999999999999999999876431 23333322233333444544433 388
Q ss_pred cEEEEecCCceeec
Q 008286 372 KWMLYIDVDEFVYS 385 (571)
Q Consensus 372 dWVlfiDaDEfL~p 385 (571)
+|++++|.|..+.+
T Consensus 80 ~~i~~~D~D~~~~~ 93 (180)
T cd06423 80 DIVVVLDADTILEP 93 (180)
T ss_pred CEEEEECCCCCcCh
Confidence 99999999998865
No 20
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.07 E-value=2.2e-05 Score=76.11 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=66.8
Q ss_pred EEEecchHHHHHHHHHHhhhc---CccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCCC
Q 008286 295 CTMVYNVAKFVKEWVIYHTKI---GVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHSC 371 (571)
Q Consensus 295 ctivkNEa~~L~EwIeyH~~l---Gvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~ 371 (571)
++.++|++..|..+|+.-..+ ..-+++|+||+|+|++.++++.|.+..-.+..+......+...+.|.++..+. .
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~~~n~G~~~a~n~g~~~a~--g 79 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAAR--G 79 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCCceEEEecCCCCChHHHHHHHHHHcC--C
Confidence 455899999998888775443 24589999999999999999998664333555555555556677787776554 5
Q ss_pred cEEEEecCCceeec
Q 008286 372 KWMLYIDVDEFVYS 385 (571)
Q Consensus 372 dWVlfiDaDEfL~p 385 (571)
+||+++|.|..+.+
T Consensus 80 d~i~~lD~D~~~~~ 93 (224)
T cd06442 80 DVIVVMDADLSHPP 93 (224)
T ss_pred CEEEEEECCCCCCH
Confidence 99999999988765
No 21
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=98.06 E-value=4.1e-05 Score=83.92 Aligned_cols=96 Identities=17% Similarity=0.123 Sum_probs=70.5
Q ss_pred CCceEEEEEEecchHHHHHHHHHHhhhcCc--c--EEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHH
Q 008286 288 PKSEICVCTMVYNVAKFVKEWVIYHTKIGV--E--KFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHN 363 (571)
Q Consensus 288 ~k~~IcVctivkNEa~~L~EwIeyH~~lGv--d--~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndc 363 (571)
....++|++-++||++.|.++|+.-..+-. + +++|.||+|+|+|.++++.+.+..-.+.++.-+..++...+.|..
T Consensus 47 ~~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN~g 126 (439)
T TIGR03111 47 KLPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNAA 126 (439)
T ss_pred CCCCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHHHH
Confidence 345688888899999999999998655432 2 599999999999999998876543223332223334555667777
Q ss_pred HHHhcCCCcEEEEecCCceeec
Q 008286 364 AIHAKHSCKWMLYIDVDEFVYS 385 (571)
Q Consensus 364 l~r~~~~~dWVlfiDaDEfL~p 385 (571)
+.. ...+||+++|+|..+.+
T Consensus 127 l~~--s~g~~v~~~DaD~~~~~ 146 (439)
T TIGR03111 127 IYN--SIGKYIIHIDSDGKLHK 146 (439)
T ss_pred HHH--ccCCEEEEECCCCCcCh
Confidence 654 35789999999999865
No 22
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=98.06 E-value=5.1e-05 Score=74.19 Aligned_cols=91 Identities=11% Similarity=0.169 Sum_probs=68.8
Q ss_pred EEEEEEecchH-HHHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCC
Q 008286 292 ICVCTMVYNVA-KFVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHS 370 (571)
Q Consensus 292 IcVctivkNEa-~~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~ 370 (571)
|+|++.++||+ ..|.++|+.-..+...+|+|.|++|+|++.+++........ +.++. ....+...+.|.++..+ .
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~~~-~~v~~-~~~~g~~~a~n~g~~~a--~ 77 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKYGG-IFVIT-VPHPGKRRALAEGIRHV--T 77 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccCCc-EEEEe-cCCCChHHHHHHHHHHh--C
Confidence 67788899999 99999999876666679999999999999998755443322 33332 23344556677776544 7
Q ss_pred CcEEEEecCCceeecC
Q 008286 371 CKWMLYIDVDEFVYSP 386 (571)
Q Consensus 371 ~dWVlfiDaDEfL~p~ 386 (571)
.+||+++|+|..+.+.
T Consensus 78 ~d~v~~lD~D~~~~~~ 93 (235)
T cd06434 78 TDIVVLLDSDTVWPPN 93 (235)
T ss_pred CCEEEEECCCceeChh
Confidence 8999999999999974
No 23
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.03 E-value=4.7e-05 Score=76.04 Aligned_cols=96 Identities=20% Similarity=0.155 Sum_probs=67.8
Q ss_pred CCceEEEEEEecchHHHHHHHHHHhhh----cCccEEEEEEcCCChhHHHHHHhhcCC-C-cEEEEEecCCchhHHHHHH
Q 008286 288 PKSEICVCTMVYNVAKFVKEWVIYHTK----IGVEKFILYDNGSEDDLQNVVNELNGD-G-YNVTTLLWIWPKTQEAGFS 361 (571)
Q Consensus 288 ~k~~IcVctivkNEa~~L~EwIeyH~~----lGvd~f~IYDn~StD~t~eIL~~y~~~-G-~~Vt~i~Wp~~~~Q~aa~n 361 (571)
....++|++.++||++.|.+.++.-.. .+--+|+|+|++|+|+|.++++.+.+. + ..+..+.-+...+...++|
T Consensus 7 ~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n 86 (243)
T PLN02726 7 GAMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYI 86 (243)
T ss_pred CCceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHH
Confidence 345789998899999988776654322 112289999999999999999987542 1 1245444444444456677
Q ss_pred HHHHHhcCCCcEEEEecCCceeec
Q 008286 362 HNAIHAKHSCKWMLYIDVDEFVYS 385 (571)
Q Consensus 362 dcl~r~~~~~dWVlfiDaDEfL~p 385 (571)
.++.. ...+|++++|+|-.+.+
T Consensus 87 ~g~~~--a~g~~i~~lD~D~~~~~ 108 (243)
T PLN02726 87 HGLKH--ASGDFVVIMDADLSHHP 108 (243)
T ss_pred HHHHH--cCCCEEEEEcCCCCCCH
Confidence 76654 36799999999988655
No 24
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.02 E-value=9e-05 Score=67.51 Aligned_cols=87 Identities=20% Similarity=0.128 Sum_probs=65.9
Q ss_pred EEEecchHHHHHHHHHHhhhc--CccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCCCc
Q 008286 295 CTMVYNVAKFVKEWVIYHTKI--GVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHSCK 372 (571)
Q Consensus 295 ctivkNEa~~L~EwIeyH~~l--Gvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~d 372 (571)
++.++|+...|.+.|+.-..+ ...+++|+|++|+|++.++++.+.. +++++.-+...+...+.|.++..+ .++
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~---~~~~~~~~~~~g~~~a~n~~~~~~--~~~ 76 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP---EVRLIRNGENLGFGAGNNQGIREA--KGD 76 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC---CeEEEecCCCcChHHHhhHHHhhC--CCC
Confidence 456789999999888886554 3568999999999999999987754 255544444445556677777655 799
Q ss_pred EEEEecCCceeecC
Q 008286 373 WMLYIDVDEFVYSP 386 (571)
Q Consensus 373 WVlfiDaDEfL~p~ 386 (571)
|++++|.|..+.+.
T Consensus 77 ~i~~~D~D~~~~~~ 90 (166)
T cd04186 77 YVLLLNPDTVVEPG 90 (166)
T ss_pred EEEEECCCcEECcc
Confidence 99999999988653
No 25
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=98.01 E-value=4.9e-05 Score=81.80 Aligned_cols=98 Identities=15% Similarity=0.045 Sum_probs=69.6
Q ss_pred CCceEEEEEEecchHHHHHHHHHHhhhcCc---cEEEEEEcCCChhHHHHHHhhcCCCc---EEEEEec---C-CchhHH
Q 008286 288 PKSEICVCTMVYNVAKFVKEWVIYHTKIGV---EKFILYDNGSEDDLQNVVNELNGDGY---NVTTLLW---I-WPKTQE 357 (571)
Q Consensus 288 ~k~~IcVctivkNEa~~L~EwIeyH~~lGv---d~f~IYDn~StD~t~eIL~~y~~~G~---~Vt~i~W---p-~~~~Q~ 357 (571)
....++|++.++||++.|.++|+.-..+-. -+|+|+||+|+|+|.++++.+.+..- .+.++.- + +..+..
T Consensus 38 ~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~ 117 (384)
T TIGR03469 38 AWPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKL 117 (384)
T ss_pred CCCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchH
Confidence 445699999999999999999998655532 38999999999999999998864210 2444431 1 223444
Q ss_pred HHHHHHHHHhcC---CCcEEEEecCCceeec
Q 008286 358 AGFSHNAIHAKH---SCKWMLYIDVDEFVYS 385 (571)
Q Consensus 358 aa~ndcl~r~~~---~~dWVlfiDaDEfL~p 385 (571)
.+.|..+..++. ..||++++|+|-.+.|
T Consensus 118 ~A~n~g~~~A~~~~~~gd~llflDaD~~~~p 148 (384)
T TIGR03469 118 WAVSQGIAAARTLAPPADYLLLTDADIAHGP 148 (384)
T ss_pred HHHHHHHHHHhccCCCCCEEEEECCCCCCCh
Confidence 455655554432 2899999999998765
No 26
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.00 E-value=8.4e-05 Score=70.83 Aligned_cols=93 Identities=15% Similarity=0.172 Sum_probs=64.5
Q ss_pred eEEEEEEecchH-HHHHHHHHHhhhcCc--cEEEEEEcCCChh-HHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHH
Q 008286 291 EICVCTMVYNVA-KFVKEWVIYHTKIGV--EKFILYDNGSEDD-LQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIH 366 (571)
Q Consensus 291 ~IcVctivkNEa-~~L~EwIeyH~~lGv--d~f~IYDn~StD~-t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r 366 (571)
.++|++.++|+. +.|.++|+.-..+-. -+++|+|++|+|+ +.++++.+......++.+.-+...+-..++|..+..
T Consensus 2 ~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~ 81 (202)
T cd04184 2 LISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALEL 81 (202)
T ss_pred eEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHHHh
Confidence 478888899999 999999988654422 3899999999986 556777765432224443323333333456666654
Q ss_pred hcCCCcEEEEecCCceeec
Q 008286 367 AKHSCKWMLYIDVDEFVYS 385 (571)
Q Consensus 367 ~~~~~dWVlfiDaDEfL~p 385 (571)
+ .++|++++|.|..+.+
T Consensus 82 a--~~d~i~~ld~D~~~~~ 98 (202)
T cd04184 82 A--TGEFVALLDHDDELAP 98 (202)
T ss_pred h--cCCEEEEECCCCcCCh
Confidence 3 5799999999998875
No 27
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=97.98 E-value=8.3e-05 Score=73.19 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=72.0
Q ss_pred eEEEEEEecchHHHHHHHHHHhhhcCc----cEEEEEEcCCChhHHHHHHhhcC----CCcEEEEEecCC-chhHHHHHH
Q 008286 291 EICVCTMVYNVAKFVKEWVIYHTKIGV----EKFILYDNGSEDDLQNVVNELNG----DGYNVTTLLWIW-PKTQEAGFS 361 (571)
Q Consensus 291 ~IcVctivkNEa~~L~EwIeyH~~lGv----d~f~IYDn~StD~t~eIL~~y~~----~G~~Vt~i~Wp~-~~~Q~aa~n 361 (571)
.++|++.++||+++|.++|+.-..+-. -+|+|.|+ |+|+|.++++++.+ .+..+..+.... .+....+.|
T Consensus 2 ~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n 80 (232)
T cd06437 2 MVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALA 80 (232)
T ss_pred ceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHH
Confidence 478888899999999999998655422 25778886 99999999887642 233344333222 222223445
Q ss_pred HHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEEEEe
Q 008286 362 HNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVSIRC 415 (571)
Q Consensus 362 dcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~~~w 415 (571)
..+. ....+||+++|+|-.+.+. .-..+..++. .++++.+.-.+
T Consensus 81 ~g~~--~a~~~~i~~~DaD~~~~~~-------~l~~~~~~~~-~~~v~~v~~~~ 124 (232)
T cd06437 81 EGMK--VAKGEYVAIFDADFVPPPD-------FLQKTPPYFA-DPKLGFVQTRW 124 (232)
T ss_pred HHHH--hCCCCEEEEEcCCCCCChH-------HHHHhhhhhc-CCCeEEEecce
Confidence 4443 3378999999999998763 2222433332 35666655433
No 28
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=97.98 E-value=6.6e-05 Score=73.54 Aligned_cols=91 Identities=16% Similarity=0.204 Sum_probs=69.0
Q ss_pred EEEEEEecchHHHHHHHHHHhhhcCc----cEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHh
Q 008286 292 ICVCTMVYNVAKFVKEWVIYHTKIGV----EKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHA 367 (571)
Q Consensus 292 IcVctivkNEa~~L~EwIeyH~~lGv----d~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~ 367 (571)
++|++.++|+++.|.+.|+....+.. -+++|.||+|+|++.++++.+.+....|.++.-+. .+...+.|.++..+
T Consensus 2 ~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~~-~~~~~a~N~g~~~a 80 (249)
T cd02525 2 VSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNPK-RIQSAGLNIGIRNS 80 (249)
T ss_pred EEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCCC-CCchHHHHHHHHHh
Confidence 67788889999999999998766644 38999999999999999999976533355543332 23345677776654
Q ss_pred cCCCcEEEEecCCceeec
Q 008286 368 KHSCKWMLYIDVDEFVYS 385 (571)
Q Consensus 368 ~~~~dWVlfiDaDEfL~p 385 (571)
..+|++++|.|..+.+
T Consensus 81 --~~d~v~~lD~D~~~~~ 96 (249)
T cd02525 81 --RGDIIIRVDAHAVYPK 96 (249)
T ss_pred --CCCEEEEECCCccCCH
Confidence 7899999999998765
No 29
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=97.94 E-value=0.00014 Score=69.16 Aligned_cols=89 Identities=11% Similarity=0.018 Sum_probs=63.1
Q ss_pred EEEecchHHHHHHHHHHhhhcCc----cEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHh---
Q 008286 295 CTMVYNVAKFVKEWVIYHTKIGV----EKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHA--- 367 (571)
Q Consensus 295 ctivkNEa~~L~EwIeyH~~lGv----d~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~--- 367 (571)
++.++||+..|.++|+.-..+.. -+|+|+|++|+|+|.++++.+... +....-+...++..+.|..+..+
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~~~~---~~~~~~~~~~gk~~aln~g~~~a~~~ 78 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAAGAT---VLERHDPERRGKGYALDFGFRHLLNL 78 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHcCCe---EEEeCCCCCCCHHHHHHHHHHHHHhc
Confidence 45589999999999998655433 368999999999999999887542 33222122334445566554444
Q ss_pred cCCCcEEEEecCCceeecC
Q 008286 368 KHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 368 ~~~~dWVlfiDaDEfL~p~ 386 (571)
....+|++++|+|-.+.|.
T Consensus 79 ~~~~d~v~~~DaD~~~~p~ 97 (183)
T cd06438 79 ADDPDAVVVFDADNLVDPN 97 (183)
T ss_pred CCCCCEEEEEcCCCCCChh
Confidence 2468999999999999864
No 30
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=97.92 E-value=9.6e-05 Score=78.31 Aligned_cols=98 Identities=14% Similarity=0.206 Sum_probs=72.0
Q ss_pred CCCceEEEEEEecchHHHHHHHHHHhhh----------cCccEEEEEEcCCChhHHHHHHhhcCCC----cEEEEEecCC
Q 008286 287 EPKSEICVCTMVYNVAKFVKEWVIYHTK----------IGVEKFILYDNGSEDDLQNVVNELNGDG----YNVTTLLWIW 352 (571)
Q Consensus 287 ~~k~~IcVctivkNEa~~L~EwIeyH~~----------lGvd~f~IYDn~StD~t~eIL~~y~~~G----~~Vt~i~Wp~ 352 (571)
.....++|++.++||++.|.+.|+--.. .+--+++|+|+||+|+|.++++.+.+.. ..+.++.-+.
T Consensus 67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 4566889999999999999887775322 1235899999999999999999986531 1245555455
Q ss_pred chhHHHHHHHHHHHhcCCCcEEEEecCCceeecC
Q 008286 353 PKTQEAGFSHNAIHAKHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 353 ~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEfL~p~ 386 (571)
+.++..+++..+..+ ..+||+++|+|-...+.
T Consensus 147 N~G~~~A~~~Gi~~a--~gd~I~~~DaD~~~~~~ 178 (333)
T PTZ00260 147 NKGKGGAVRIGMLAS--RGKYILMVDADGATDID 178 (333)
T ss_pred CCChHHHHHHHHHHc--cCCEEEEEeCCCCCCHH
Confidence 556666666665543 57999999999988774
No 31
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=97.91 E-value=0.00017 Score=69.51 Aligned_cols=112 Identities=12% Similarity=0.048 Sum_probs=71.1
Q ss_pred EEEecchHHHHHHHHHHhhhcC-ccEEEEEEcCCChhHHHHHHhhcCCCcEEEEE--ecCC-chhHHHHHHHHHHHhcC-
Q 008286 295 CTMVYNVAKFVKEWVIYHTKIG-VEKFILYDNGSEDDLQNVVNELNGDGYNVTTL--LWIW-PKTQEAGFSHNAIHAKH- 369 (571)
Q Consensus 295 ctivkNEa~~L~EwIeyH~~lG-vd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i--~Wp~-~~~Q~aa~ndcl~r~~~- 369 (571)
++.++||++.|.++|+.-..+. -.+|+|+|++|+|+|.++++ +......+.++ .++. ..+...+.|..+..+..
T Consensus 2 iIp~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~-~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~ 80 (191)
T cd06436 2 LVPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR-LAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQI 80 (191)
T ss_pred EEeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh-heecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhh
Confidence 4558999999999998855543 23799999999999999998 32221123333 2222 22334556666654432
Q ss_pred --------CCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEEEEe
Q 008286 370 --------SCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVSIRC 415 (571)
Q Consensus 370 --------~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~~~w 415 (571)
..+||+++|+|-.+.+. .-..+..++. .|.++.+...+
T Consensus 81 ~~~~g~~~~~d~v~~~DaD~~~~~~-------~l~~~~~~~~-~~~v~~v~~~~ 126 (191)
T cd06436 81 LIEEGADPERVIIAVIDADGRLDPN-------ALEAVAPYFS-DPRVAGTQSRV 126 (191)
T ss_pred ccccccCCCccEEEEECCCCCcCHh-------HHHHHHHhhc-CCceEEEeeeE
Confidence 35899999999998874 1222444443 35666665444
No 32
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.89 E-value=0.0001 Score=77.74 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=68.0
Q ss_pred CceEEEEEEecchHHHHHHHHHHhhh----cCc-cEEEEEEcCCChhHHHHHHhhcCC-CcEEEEEecCCchhHHHHHHH
Q 008286 289 KSEICVCTMVYNVAKFVKEWVIYHTK----IGV-EKFILYDNGSEDDLQNVVNELNGD-GYNVTTLLWIWPKTQEAGFSH 362 (571)
Q Consensus 289 k~~IcVctivkNEa~~L~EwIeyH~~----lGv-d~f~IYDn~StD~t~eIL~~y~~~-G~~Vt~i~Wp~~~~Q~aa~nd 362 (571)
...++|++-++||++.|.+.++.-.. .+. -+|+|+|++|+|+|.++++.+.+. +..+..+......++..+++.
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~ 84 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMA 84 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHH
Confidence 34589998899999998888765321 222 389999999999999999988643 333443333444455556665
Q ss_pred HHHHhcCCCcEEEEecCCceeecC
Q 008286 363 NAIHAKHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 363 cl~r~~~~~dWVlfiDaDEfL~p~ 386 (571)
.+.. ...||++++|+|....|.
T Consensus 85 G~~~--A~gd~vv~~DaD~q~~p~ 106 (325)
T PRK10714 85 GFSH--VTGDLIITLDADLQNPPE 106 (325)
T ss_pred HHHh--CCCCEEEEECCCCCCCHH
Confidence 5433 367999999999997763
No 33
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=97.88 E-value=0.00015 Score=79.47 Aligned_cols=114 Identities=14% Similarity=0.172 Sum_probs=78.8
Q ss_pred CceEEEEEEecchHHHHHHHHHHhhhcCc--cEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHH
Q 008286 289 KSEICVCTMVYNVAKFVKEWVIYHTKIGV--EKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIH 366 (571)
Q Consensus 289 k~~IcVctivkNEa~~L~EwIeyH~~lGv--d~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r 366 (571)
...++|..-++||+..|.++|+.-..+.. -+|+|.|++|+|+|.++++++.++.-.+.++.-....+...+.|..+..
T Consensus 74 ~p~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~gl~~ 153 (444)
T PRK14583 74 HPLVSILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMGAAA 153 (444)
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHHHHh
Confidence 34688888899999999999998544422 3799999999999999999886542224444323333444566666543
Q ss_pred hcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhh---ccCCccEEEEE
Q 008286 367 AKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIP---QLHSIGQVSIR 414 (571)
Q Consensus 367 ~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~---~~p~i~~i~~~ 414 (571)
.+.||++++|+|..+.+. .|..+++ +.++++++.-+
T Consensus 154 --a~~d~iv~lDAD~~~~~d----------~L~~lv~~~~~~~~~g~v~g~ 192 (444)
T PRK14583 154 --ARSEYLVCIDGDALLDKN----------AVPYLVAPLIANPRTGAVTGN 192 (444)
T ss_pred --CCCCEEEEECCCCCcCHH----------HHHHHHHHHHhCCCeEEEEcc
Confidence 478999999999988763 3433333 34667766543
No 34
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.87 E-value=0.00014 Score=70.34 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=63.0
Q ss_pred EEEecchHHHHHHHHHHhhhcC--c--cEEEEEEcCCChhHHHHHH-hhcCCCcEEEEEecC--CchhHHHHHHHHHHHh
Q 008286 295 CTMVYNVAKFVKEWVIYHTKIG--V--EKFILYDNGSEDDLQNVVN-ELNGDGYNVTTLLWI--WPKTQEAGFSHNAIHA 367 (571)
Q Consensus 295 ctivkNEa~~L~EwIeyH~~lG--v--d~f~IYDn~StD~t~eIL~-~y~~~G~~Vt~i~Wp--~~~~Q~aa~ndcl~r~ 367 (571)
++.++|+...|.++|+.-..+- . -+|+|.|++|+|++.++++ .....+..+.++.-+ ...+...++|.++..
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~- 80 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKA- 80 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHH-
Confidence 4568999999999998854442 2 4799999999999999988 222223335554433 234455667777654
Q ss_pred cCCCcEEEEecCCceeec
Q 008286 368 KHSCKWMLYIDVDEFVYS 385 (571)
Q Consensus 368 ~~~~dWVlfiDaDEfL~p 385 (571)
...+||+++|+|..+.+
T Consensus 81 -~~~d~i~~~D~D~~~~~ 97 (229)
T cd04192 81 -AKGDWIVTTDADCVVPS 97 (229)
T ss_pred -hcCCEEEEECCCcccCH
Confidence 36799999999998865
No 35
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=97.84 E-value=0.00017 Score=74.39 Aligned_cols=91 Identities=16% Similarity=-0.007 Sum_probs=65.3
Q ss_pred EEEEEecchH-HHHHHHHHHhhhcC---c-cEEEEEEcCCChhHHHHHHhhc--CCCcEEEEEecCCchhHHHHHHHHHH
Q 008286 293 CVCTMVYNVA-KFVKEWVIYHTKIG---V-EKFILYDNGSEDDLQNVVNELN--GDGYNVTTLLWIWPKTQEAGFSHNAI 365 (571)
Q Consensus 293 cVctivkNEa-~~L~EwIeyH~~lG---v-d~f~IYDn~StD~t~eIL~~y~--~~G~~Vt~i~Wp~~~~Q~aa~ndcl~ 365 (571)
+|++.++|+. +.|.++|+.-..+- . .+|+|+||+|+|++.+++..+. +....|.++.-+...+-..+.|..+.
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~ 80 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGAR 80 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4677799999 99999999854432 1 3899999999999999886521 11113666655555555566677765
Q ss_pred HhcCCCcEEEEecCCceeec
Q 008286 366 HAKHSCKWMLYIDVDEFVYS 385 (571)
Q Consensus 366 r~~~~~dWVlfiDaDEfL~p 385 (571)
.+ ..+||+|+|.|-.+.+
T Consensus 81 ~A--~gd~i~fLD~D~~~~~ 98 (299)
T cd02510 81 AA--TGDVLVFLDSHCEVNV 98 (299)
T ss_pred Hc--cCCEEEEEeCCcccCc
Confidence 44 6799999999999854
No 36
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=97.82 E-value=0.00014 Score=71.21 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=63.3
Q ss_pred EEecchH-HHHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcC-CCcE
Q 008286 296 TMVYNVA-KFVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKH-SCKW 373 (571)
Q Consensus 296 tivkNEa-~~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~-~~dW 373 (571)
+..+|++ ..|.++|+.-..+ ..+|+|+||+|+|.+..+++. ...+ +..+.-+...+-..++|.++..+.. +++|
T Consensus 3 I~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~-~~~~--i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~ 78 (237)
T cd02526 3 VVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRL-NSEK--IELIHLGENLGIAKALNIGIKAALENGADY 78 (237)
T ss_pred EEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhc-cCCc--EEEEECCCceehHHhhhHHHHHHHhCCCCE
Confidence 3478888 9999999997666 678999999998887766654 2332 4455444444445667777776554 7899
Q ss_pred EEEecCCceeec
Q 008286 374 MLYIDVDEFVYS 385 (571)
Q Consensus 374 VlfiDaDEfL~p 385 (571)
++++|.|..+.+
T Consensus 79 v~~lD~D~~~~~ 90 (237)
T cd02526 79 VLLFDQDSVPPP 90 (237)
T ss_pred EEEECCCCCcCH
Confidence 999999999875
No 37
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=97.79 E-value=0.00014 Score=70.93 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=63.2
Q ss_pred EEEecchHHHHHHHHHHhhhcCc---cEEEEEEcCCChhHHHHHHhhcCC----CcEEEEEe--cCCchhHHHHHHHHHH
Q 008286 295 CTMVYNVAKFVKEWVIYHTKIGV---EKFILYDNGSEDDLQNVVNELNGD----GYNVTTLL--WIWPKTQEAGFSHNAI 365 (571)
Q Consensus 295 ctivkNEa~~L~EwIeyH~~lGv---d~f~IYDn~StD~t~eIL~~y~~~----G~~Vt~i~--Wp~~~~Q~aa~ndcl~ 365 (571)
++.++|++++|.++|+.-..+-. -+++|+|++|+|+|.++++.|.++ ++.+.... .+...+-..+.|.++.
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~ 81 (219)
T cd06913 2 ILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIA 81 (219)
T ss_pred EEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHH
Confidence 45689999999999998655422 389999999999999999987542 22222211 1222334455666654
Q ss_pred HhcCCCcEEEEecCCceeecC
Q 008286 366 HAKHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 366 r~~~~~dWVlfiDaDEfL~p~ 386 (571)
. ...+|++|+|+|..+.+.
T Consensus 82 ~--a~gd~i~~lD~D~~~~~~ 100 (219)
T cd06913 82 Q--SSGRYLCFLDSDDVMMPQ 100 (219)
T ss_pred h--cCCCEEEEECCCccCChh
Confidence 3 367999999999998874
No 38
>PRK10018 putative glycosyl transferase; Provisional
Probab=97.79 E-value=0.00044 Score=71.66 Aligned_cols=94 Identities=16% Similarity=0.103 Sum_probs=68.6
Q ss_pred CceEEEEEEecchHHHHHHHHHHhhhcCcc--EEEEEEcCCCh--hHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHH
Q 008286 289 KSEICVCTMVYNVAKFVKEWVIYHTKIGVE--KFILYDNGSED--DLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNA 364 (571)
Q Consensus 289 k~~IcVctivkNEa~~L~EwIeyH~~lGvd--~f~IYDn~StD--~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl 364 (571)
+..++|++.++|++++|.+.|+.-..+-.. +++|.|++|+| .+.++++.+.+. .|.++.-+...+..++.|.++
T Consensus 4 ~p~VSVIip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~~~--ri~~i~~~~n~G~~~a~N~gi 81 (279)
T PRK10018 4 NPLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDP--RITYIHNDINSGACAVRNQAI 81 (279)
T ss_pred CCEEEEEEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcCCC--CEEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999999886555443 89999999994 334444443332 366555555566667777776
Q ss_pred HHhcCCCcEEEEecCCceeecC
Q 008286 365 IHAKHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 365 ~r~~~~~dWVlfiDaDEfL~p~ 386 (571)
.. ...+||+|+|+|..+.|.
T Consensus 82 ~~--a~g~~I~~lDaDD~~~p~ 101 (279)
T PRK10018 82 ML--AQGEYITGIDDDDEWTPN 101 (279)
T ss_pred HH--cCCCEEEEECCCCCCCcc
Confidence 54 478999999999999874
No 39
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=97.79 E-value=0.0002 Score=70.25 Aligned_cols=93 Identities=16% Similarity=0.159 Sum_probs=62.7
Q ss_pred EEEEEecchH-HHHHHHHHHhhhcCc--cEEEEEEcCCChhHH-HHHHhhcCC-CcEEEEEecC-CchhHHHHHHHHHHH
Q 008286 293 CVCTMVYNVA-KFVKEWVIYHTKIGV--EKFILYDNGSEDDLQ-NVVNELNGD-GYNVTTLLWI-WPKTQEAGFSHNAIH 366 (571)
Q Consensus 293 cVctivkNEa-~~L~EwIeyH~~lGv--d~f~IYDn~StD~t~-eIL~~y~~~-G~~Vt~i~Wp-~~~~Q~aa~ndcl~r 366 (571)
+|++-++||+ ..|.++|+.-..+.. -+++|+||+|+|++. ++++.+.+. +..+..+.-. ..+.+..+.|.++..
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~ 80 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALER 80 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHh
Confidence 3566689997 789999988666643 489999999999975 444444321 2123333222 223345567877776
Q ss_pred hcCCCcEEEEecCCceeec
Q 008286 367 AKHSCKWMLYIDVDEFVYS 385 (571)
Q Consensus 367 ~~~~~dWVlfiDaDEfL~p 385 (571)
+...+||++++|+|-.+.+
T Consensus 81 a~~~~d~i~~lD~D~~~~~ 99 (236)
T cd06435 81 TAPDAEIIAVIDADYQVEP 99 (236)
T ss_pred cCCCCCEEEEEcCCCCcCH
Confidence 6556899999999987665
No 40
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=97.71 E-value=0.00018 Score=67.89 Aligned_cols=89 Identities=20% Similarity=0.140 Sum_probs=59.9
Q ss_pred EEEecchHHHHHHHHHHhhhc-----CccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcC
Q 008286 295 CTMVYNVAKFVKEWVIYHTKI-----GVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKH 369 (571)
Q Consensus 295 ctivkNEa~~L~EwIeyH~~l-----Gvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~ 369 (571)
++.++|++..|.+.|+....+ .--+++|.|++|+|++.++++.+.+...++..+.-....+...++|..+..+
T Consensus 2 iIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~n~g~~~a-- 79 (181)
T cd04187 2 VVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLDHA-- 79 (181)
T ss_pred EEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecCCCCcHHHHHHHHHhc--
Confidence 456889998887776653221 2248999999999999999999876543344443222223334455544433
Q ss_pred CCcEEEEecCCceeec
Q 008286 370 SCKWMLYIDVDEFVYS 385 (571)
Q Consensus 370 ~~dWVlfiDaDEfL~p 385 (571)
..+|++++|.|..+.+
T Consensus 80 ~~d~i~~~D~D~~~~~ 95 (181)
T cd04187 80 RGDAVITMDADLQDPP 95 (181)
T ss_pred CCCEEEEEeCCCCCCH
Confidence 5699999999999765
No 41
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=97.71 E-value=0.00026 Score=74.26 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=64.9
Q ss_pred CCceEEEEEEecchHHHHHHHHHHhhhc----CccEEEEEEcCCChhHHHHHHhhcCCCcE-EEEEe-cCCchhHHHHHH
Q 008286 288 PKSEICVCTMVYNVAKFVKEWVIYHTKI----GVEKFILYDNGSEDDLQNVVNELNGDGYN-VTTLL-WIWPKTQEAGFS 361 (571)
Q Consensus 288 ~k~~IcVctivkNEa~~L~EwIeyH~~l----Gvd~f~IYDn~StD~t~eIL~~y~~~G~~-Vt~i~-Wp~~~~Q~aa~n 361 (571)
....++|++-++||++.|.+.|+.-..+ ...+|+|.|++|+|+|.++++.+...-+. ...+. -+...+-..+.+
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~~ 108 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVSREEILPELPPRPGKGEALW 108 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhhhccccCCCHHHHHH
Confidence 4467899988999999999988875432 34699999999999999999988543110 00000 011222234445
Q ss_pred HHHHHhcCCCcEEEEecCCce-eec
Q 008286 362 HNAIHAKHSCKWMLYIDVDEF-VYS 385 (571)
Q Consensus 362 dcl~r~~~~~dWVlfiDaDEf-L~p 385 (571)
..+. ....+||+++|+|-. +.+
T Consensus 109 ~g~~--~a~gd~vv~lDaD~~~~~p 131 (306)
T PRK13915 109 RSLA--ATTGDIVVFVDADLINFDP 131 (306)
T ss_pred HHHH--hcCCCEEEEEeCccccCCH
Confidence 4443 346799999999997 444
No 42
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=97.67 E-value=0.00043 Score=66.60 Aligned_cols=93 Identities=11% Similarity=0.013 Sum_probs=62.2
Q ss_pred eEEEEEEecchHHHHHHHHHHhhhcC--ccEEEEEEcCCChhHHHHHHhhcCC-C-cEEEEEecCCc---hhHHHHHHHH
Q 008286 291 EICVCTMVYNVAKFVKEWVIYHTKIG--VEKFILYDNGSEDDLQNVVNELNGD-G-YNVTTLLWIWP---KTQEAGFSHN 363 (571)
Q Consensus 291 ~IcVctivkNEa~~L~EwIeyH~~lG--vd~f~IYDn~StD~t~eIL~~y~~~-G-~~Vt~i~Wp~~---~~Q~aa~ndc 363 (571)
.++|++-++||+..|.++|+.-..+- --+++|+|++|+|+|.++++.+.+. . ..+.++.-... .....++|..
T Consensus 2 ~vsviip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g 81 (196)
T cd02520 2 GVSILKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKG 81 (196)
T ss_pred CeEEEEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHH
Confidence 37888889999999999998865432 1389999999999999999888543 1 12333221211 1222233333
Q ss_pred HHHhcCCCcEEEEecCCceeec
Q 008286 364 AIHAKHSCKWMLYIDVDEFVYS 385 (571)
Q Consensus 364 l~r~~~~~dWVlfiDaDEfL~p 385 (571)
+. ....+|++++|+|..+.+
T Consensus 82 ~~--~a~~d~i~~~D~D~~~~~ 101 (196)
T cd02520 82 YE--EARYDILVISDSDISVPP 101 (196)
T ss_pred HH--hCCCCEEEEECCCceECh
Confidence 32 346899999999987754
No 43
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=97.64 E-value=0.00091 Score=62.60 Aligned_cols=89 Identities=11% Similarity=0.079 Sum_probs=59.9
Q ss_pred EEEecchHHHHHHHHHHhhhc--CccEEEEEEcCCChhHHHHHHhhcCC-CcEEEEE-ecCCchhHHHHHHHHHHHhcCC
Q 008286 295 CTMVYNVAKFVKEWVIYHTKI--GVEKFILYDNGSEDDLQNVVNELNGD-GYNVTTL-LWIWPKTQEAGFSHNAIHAKHS 370 (571)
Q Consensus 295 ctivkNEa~~L~EwIeyH~~l--Gvd~f~IYDn~StD~t~eIL~~y~~~-G~~Vt~i-~Wp~~~~Q~aa~ndcl~r~~~~ 370 (571)
++.++|+...|.++|+.-..+ .-.+++|+|++|+|++.++++.+.+. +..+..+ .-+...+-..+.|.++.. ..
T Consensus 2 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~--a~ 79 (182)
T cd06420 2 IITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAA--AK 79 (182)
T ss_pred EEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHH--hc
Confidence 456789999999999886553 23489999999999999999988652 2212221 111111122345555543 46
Q ss_pred CcEEEEecCCceeec
Q 008286 371 CKWMLYIDVDEFVYS 385 (571)
Q Consensus 371 ~dWVlfiDaDEfL~p 385 (571)
.+|++++|+|..+.+
T Consensus 80 g~~i~~lD~D~~~~~ 94 (182)
T cd06420 80 GDYLIFIDGDCIPHP 94 (182)
T ss_pred CCEEEEEcCCcccCH
Confidence 799999999997754
No 44
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=97.55 E-value=0.0007 Score=72.54 Aligned_cols=95 Identities=12% Similarity=0.027 Sum_probs=64.3
Q ss_pred CceEEEEEEecchHHHHHHHHHHhhhcCc--cEEEEEEcCCChhHHHHHHhhcCC--CcEEEEEecCCc-h-hHHHHHHH
Q 008286 289 KSEICVCTMVYNVAKFVKEWVIYHTKIGV--EKFILYDNGSEDDLQNVVNELNGD--GYNVTTLLWIWP-K-TQEAGFSH 362 (571)
Q Consensus 289 k~~IcVctivkNEa~~L~EwIeyH~~lGv--d~f~IYDn~StD~t~eIL~~y~~~--G~~Vt~i~Wp~~-~-~Q~aa~nd 362 (571)
...++|+.-++||++.|.|+|+.-..+-- -+|+|.|++|+|.+.++++++.+. ...|.++.-+.. + ..+ .+.
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K--~~~ 117 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRK--VSN 117 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChH--HHH
Confidence 44588888899999999999998766543 378889999999999999888653 122433322211 1 111 112
Q ss_pred HHH-HhcCCCcEEEEecCCceeec
Q 008286 363 NAI-HAKHSCKWMLYIDVDEFVYS 385 (571)
Q Consensus 363 cl~-r~~~~~dWVlfiDaDEfL~p 385 (571)
|.. -....+||++++|+|-.+.+
T Consensus 118 l~~~~~~a~ge~i~~~DaD~~~~p 141 (373)
T TIGR03472 118 LINMLPHARHDILVIADSDISVGP 141 (373)
T ss_pred HHHHHHhccCCEEEEECCCCCcCh
Confidence 221 13457999999999987754
No 45
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=97.48 E-value=0.00036 Score=68.03 Aligned_cols=111 Identities=15% Similarity=0.219 Sum_probs=62.2
Q ss_pred eEEEEEEecchHHHHHHHHHHhhhc--CccEEEEEEcCCChhHHHHHHhh----cCCCcEEEEEecCCch---hHHHHHH
Q 008286 291 EICVCTMVYNVAKFVKEWVIYHTKI--GVEKFILYDNGSEDDLQNVVNEL----NGDGYNVTTLLWIWPK---TQEAGFS 361 (571)
Q Consensus 291 ~IcVctivkNEa~~L~EwIeyH~~l--Gvd~f~IYDn~StD~t~eIL~~y----~~~G~~Vt~i~Wp~~~---~Q~aa~n 361 (571)
.|+|++.++||...|.+.|+....+ .--+++|.||+++|++.++++.+ ...+ ++++.-+... .-..+.|
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~--v~vi~~~~~~g~~~k~~a~n 79 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVR--VRVIRRPRNPGPGGKARALN 79 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-G--EEEEE----HHHHHHHHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCc--eEEeecCCCCCcchHHHHHH
Confidence 4788888999999999999985543 22478999999999887776654 3223 3443322211 2234566
Q ss_pred HHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhc--cCCccEEEEEe
Q 008286 362 HNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQ--LHSIGQVSIRC 415 (571)
Q Consensus 362 dcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~--~p~i~~i~~~w 415 (571)
+++... .++|++++|.|.++.|. .|..+++. .++++.+....
T Consensus 80 ~~~~~~--~~d~i~~lD~D~~~~p~----------~l~~~~~~~~~~~~~~v~~~~ 123 (228)
T PF13641_consen 80 EALAAA--RGDYILFLDDDTVLDPD----------WLERLLAAFADPGVGAVGGPV 123 (228)
T ss_dssp HHHHH-----SEEEEE-SSEEE-CH----------HHHHHHHHHHBSS--EEEEEE
T ss_pred HHHHhc--CCCEEEEECCCcEECHH----------HHHHHHHHHHhCCCCeEeeeE
Confidence 666544 59999999999999652 34443333 46777777443
No 46
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=97.43 E-value=0.0026 Score=55.80 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=62.7
Q ss_pred EEEecchHHHHHHHHHHhhhcC--ccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCCCc
Q 008286 295 CTMVYNVAKFVKEWVIYHTKIG--VEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHSCK 372 (571)
Q Consensus 295 ctivkNEa~~L~EwIeyH~~lG--vd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~d 372 (571)
++.++|+...|.+.|+.-..++ ..+++|+|+++++.+.+.++.+.+....+....-+...+...+.+..+... ..+
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d 79 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAA--RGE 79 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHh--cCC
Confidence 4567899999999998877776 779999999999999999988865311122222222223333344443322 799
Q ss_pred EEEEecCCceeecC
Q 008286 373 WMLYIDVDEFVYSP 386 (571)
Q Consensus 373 WVlfiDaDEfL~p~ 386 (571)
|++++|.|..+.+.
T Consensus 80 ~v~~~d~D~~~~~~ 93 (156)
T cd00761 80 YILFLDADDLLLPD 93 (156)
T ss_pred EEEEECCCCccCcc
Confidence 99999999988764
No 47
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.37 E-value=0.0021 Score=62.09 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=59.3
Q ss_pred EEEEEEecchHHHHHHHHHHhhhcC--ccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcC
Q 008286 292 ICVCTMVYNVAKFVKEWVIYHTKIG--VEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKH 369 (571)
Q Consensus 292 IcVctivkNEa~~L~EwIeyH~~lG--vd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~ 369 (571)
++|++.++|+++.|.++|+....+= -.+++|+||+|+|++.++++.. + +..+.-+ .+.-.+.|..+..+
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~~---~--~~~~~~~--~g~~~a~n~g~~~a-- 71 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARSA---G--VVVISSP--KGRARQMNAGAAAA-- 71 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhcC---C--eEEEeCC--cCHHHHHHHHHHhc--
Confidence 4677779999999999998855532 2579999999999999998872 2 2332211 12223445444433
Q ss_pred CCcEEEEecCCceeec
Q 008286 370 SCKWMLYIDVDEFVYS 385 (571)
Q Consensus 370 ~~dWVlfiDaDEfL~p 385 (571)
..+|++++|.|..+.+
T Consensus 72 ~~~~i~~~D~D~~~~~ 87 (221)
T cd02522 72 RGDWLLFLHADTRLPP 87 (221)
T ss_pred cCCEEEEEcCCCCCCh
Confidence 4799999999998865
No 48
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=97.09 E-value=0.0047 Score=73.05 Aligned_cols=115 Identities=11% Similarity=0.152 Sum_probs=73.2
Q ss_pred ceEEEEEEecchHH-HHHHHHHHhhhcCc--c--EEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCc-hhHHHHHHHH
Q 008286 290 SEICVCTMVYNVAK-FVKEWVIYHTKIGV--E--KFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWP-KTQEAGFSHN 363 (571)
Q Consensus 290 ~~IcVctivkNEa~-~L~EwIeyH~~lGv--d--~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~-~~Q~aa~ndc 363 (571)
..++|.+-++||+. .+.+.|..-..+-- + +|+|.||+|+|++.++++++ | +.++.=+.. ++-..+.|+.
T Consensus 260 P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~---~--v~yI~R~~n~~gKAGnLN~a 334 (852)
T PRK11498 260 PTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEV---G--VKYIARPTHEHAKAGNINNA 334 (852)
T ss_pred CcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHC---C--cEEEEeCCCCcchHHHHHHH
Confidence 46888888999985 45667765322211 1 79999999999999999986 3 333322222 2223456777
Q ss_pred HHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEEEEeeee
Q 008286 364 AIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVSIRCLDF 418 (571)
Q Consensus 364 l~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~~~w~~F 418 (571)
+.. .+.|||+++|+|-.+.+. .+...+ .++.+.|+++.+..+...+
T Consensus 335 L~~--a~GEyIavlDAD~ip~pd------fL~~~V-~~f~~dP~VglVQtp~~f~ 380 (852)
T PRK11498 335 LKY--AKGEFVAIFDCDHVPTRS------FLQMTM-GWFLKDKKLAMMQTPHHFF 380 (852)
T ss_pred HHh--CCCCEEEEECCCCCCChH------HHHHHH-HHHHhCCCeEEEEcceecc
Confidence 654 367999999999986542 122222 2333457888877654444
No 49
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=97.07 E-value=0.0038 Score=63.59 Aligned_cols=83 Identities=14% Similarity=0.102 Sum_probs=58.4
Q ss_pred ecch-HHHHHHHHHHhhhcCccEEEEEEcCCCh--hHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhc-CCCcE
Q 008286 298 VYNV-AKFVKEWVIYHTKIGVEKFILYDNGSED--DLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAK-HSCKW 373 (571)
Q Consensus 298 vkNE-a~~L~EwIeyH~~lGvd~f~IYDn~StD--~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~-~~~dW 373 (571)
++|. ...|.++|+.-.. ...+|+|+||+|+| .+.++++.+. .|+++.-+...+-..|+|..+..+. .++||
T Consensus 2 tyn~~~~~l~~~l~sl~~-q~~~iiVVDN~S~~~~~~~~~~~~~~----~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~ 76 (281)
T TIGR01556 2 TFNPDLEHLGELITSLPK-QVDRIIAVDNSPHSDQPLKNARLRGQ----KIALIHLGDNQGIAGAQNQGLDASFRRGVQG 76 (281)
T ss_pred ccCccHHHHHHHHHHHHh-cCCEEEEEECcCCCcHhHHHHhccCC----CeEEEECCCCcchHHHHHHHHHHHHHCCCCE
Confidence 5674 6889999987544 36899999999874 3444444332 3666665555555667776665543 47899
Q ss_pred EEEecCCceeec
Q 008286 374 MLYIDVDEFVYS 385 (571)
Q Consensus 374 VlfiDaDEfL~p 385 (571)
|+++|.|-.+.+
T Consensus 77 i~~lD~D~~~~~ 88 (281)
T TIGR01556 77 VLLLDQDSRPGN 88 (281)
T ss_pred EEEECCCCCCCH
Confidence 999999998875
No 50
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=96.65 E-value=0.024 Score=59.07 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=68.2
Q ss_pred ceEEEEEEecchHHHHHHHHHHhhhcCc--cEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHh
Q 008286 290 SEICVCTMVYNVAKFVKEWVIYHTKIGV--EKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHA 367 (571)
Q Consensus 290 ~~IcVctivkNEa~~L~EwIeyH~~lGv--d~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~ 367 (571)
..+++++..+|..+.+.++|+....+.. +++++.||+|+|++.+.++... .+ +|..+.-+.+.+=..++|.-+..+
T Consensus 3 ~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~-~~-~v~~i~~~~NlG~agg~n~g~~~a 80 (305)
T COG1216 3 PKISIIIVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF-FP-NVRLIENGENLGFAGGFNRGIKYA 80 (305)
T ss_pred cceEEEEEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc-CC-cEEEEEcCCCccchhhhhHHHHHH
Confidence 4678888899999999999998877765 3444579999999999998862 11 366665555545556677666655
Q ss_pred cCC-CcEEEEecCCceeec
Q 008286 368 KHS-CKWMLYIDVDEFVYS 385 (571)
Q Consensus 368 ~~~-~dWVlfiDaDEfL~p 385 (571)
... .+|+++++-|.++.+
T Consensus 81 ~~~~~~~~l~LN~D~~~~~ 99 (305)
T COG1216 81 LAKGDDYVLLLNPDTVVEP 99 (305)
T ss_pred hcCCCcEEEEEcCCeeeCh
Confidence 444 349999999944443
No 51
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.46 E-value=0.019 Score=61.76 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=74.2
Q ss_pred ceEEEEEEecchHH-HHHHHHHHhhhcCcc--EEEEEEcCCChhHHHHHHhhcCCC-cEEEEEecC--CchhHHHHHHHH
Q 008286 290 SEICVCTMVYNVAK-FVKEWVIYHTKIGVE--KFILYDNGSEDDLQNVVNELNGDG-YNVTTLLWI--WPKTQEAGFSHN 363 (571)
Q Consensus 290 ~~IcVctivkNEa~-~L~EwIeyH~~lGvd--~f~IYDn~StD~t~eIL~~y~~~G-~~Vt~i~Wp--~~~~Q~aa~ndc 363 (571)
..+++.+-++||+. .+.++|+....+... +++++|++++|++.++++++.++- .++... .+ ..++-..+.|..
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~gK~~al~~~ 132 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVI-YPEKKNGGKAGALNNG 132 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEE-eccccCccchHHHHHH
Confidence 67888888999998 899999997666543 899999999999999999997652 112222 22 122223455666
Q ss_pred HHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhcc
Q 008286 364 AIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQL 405 (571)
Q Consensus 364 l~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~ 405 (571)
+..+ ..|+|+++|+|=.+.+. .|.+++...
T Consensus 133 l~~~--~~d~V~~~DaD~~~~~d----------~l~~~~~~f 162 (439)
T COG1215 133 LKRA--KGDVVVILDADTVPEPD----------ALRELVSPF 162 (439)
T ss_pred Hhhc--CCCEEEEEcCCCCCChh----------HHHHHHhhh
Confidence 5544 49999999999988863 566666654
No 52
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=96.45 E-value=0.038 Score=62.11 Aligned_cols=98 Identities=8% Similarity=0.084 Sum_probs=66.4
Q ss_pred CceEEEEEEecchHHHHHHHHHHhh-hcCcc--EEEEEEcCCChhHHHHHHhhcCCCcEEEEEecC--CchhHHHHHHHH
Q 008286 289 KSEICVCTMVYNVAKFVKEWVIYHT-KIGVE--KFILYDNGSEDDLQNVVNELNGDGYNVTTLLWI--WPKTQEAGFSHN 363 (571)
Q Consensus 289 k~~IcVctivkNEa~~L~EwIeyH~-~lGvd--~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp--~~~~Q~aa~ndc 363 (571)
...++|.+-.+||++.|.+.|++-. .+--+ +|+|.+.+++|+|.++++.+.++.-+++.+.-+ +..+...++|..
T Consensus 65 ~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~ 144 (504)
T PRK14716 65 EKRIAIFVPAWREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNWI 144 (504)
T ss_pred CCceEEEEeccCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHH
Confidence 4568888889999999999999742 22222 789999999999999999876543223322222 222333456655
Q ss_pred HHHh------c-CCCcEEEEecCCceeecC
Q 008286 364 AIHA------K-HSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 364 l~r~------~-~~~dWVlfiDaDEfL~p~ 386 (571)
+... . ..+++++++|+|-.+.|.
T Consensus 145 l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd 174 (504)
T PRK14716 145 YQAIFAFERERGIRFAIIVLHDAEDVIHPL 174 (504)
T ss_pred HHHHHHhhhhcCCCcCEEEEEcCCCCcCcc
Confidence 4321 1 246999999999998874
No 53
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=96.45 E-value=0.025 Score=66.13 Aligned_cols=116 Identities=13% Similarity=0.143 Sum_probs=69.3
Q ss_pred ceEEEEEEecchHHHH-HHHHHHhhhcCc--c--EEEEEEcCCChhH--------------HHHHHhhcC-CCcEEEEEe
Q 008286 290 SEICVCTMVYNVAKFV-KEWVIYHTKIGV--E--KFILYDNGSEDDL--------------QNVVNELNG-DGYNVTTLL 349 (571)
Q Consensus 290 ~~IcVctivkNEa~~L-~EwIeyH~~lGv--d--~f~IYDn~StD~t--------------~eIL~~y~~-~G~~Vt~i~ 349 (571)
..++|++-++||+..+ .+.|+.-..+-- + +|+|.|++|+|+| .+.++.+.+ .| +.++.
T Consensus 131 P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~--v~yi~ 208 (713)
T TIGR03030 131 PTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLG--VNYIT 208 (713)
T ss_pred CeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcC--cEEEE
Confidence 4788888899998655 567776433322 2 7999999999986 233444432 23 33332
Q ss_pred cCCc-hhHHHHHHHHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEEEEee
Q 008286 350 WIWP-KTQEAGFSHNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVSIRCL 416 (571)
Q Consensus 350 Wp~~-~~Q~aa~ndcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~~~w~ 416 (571)
=+.. +.-..+.|+++.++ +.|||+++|+|-.+.+. .....+ ..+.+.|+++.+..+-.
T Consensus 209 r~~n~~~KAgnLN~al~~a--~gd~Il~lDAD~v~~pd------~L~~~v-~~f~~dp~v~~Vqtp~~ 267 (713)
T TIGR03030 209 RPRNVHAKAGNINNALKHT--DGELILIFDADHVPTRD------FLQRTV-GWFVEDPKLFLVQTPHF 267 (713)
T ss_pred CCCCCCCChHHHHHHHHhc--CCCEEEEECCCCCcChh------HHHHHH-HHHHhCCCEEEEeCCee
Confidence 2222 12234567776543 56999999999998753 122222 23333467776655433
No 54
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=96.29 E-value=0.018 Score=60.40 Aligned_cols=123 Identities=14% Similarity=0.141 Sum_probs=75.8
Q ss_pred CCCceEEEEEEecchHHHHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCc------h---hHH
Q 008286 287 EPKSEICVCTMVYNVAKFVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWP------K---TQE 357 (571)
Q Consensus 287 ~~k~~IcVctivkNEa~~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~------~---~Q~ 357 (571)
+.....++..-++||+.+|.++|+.+.- -+|+.+|--|+|+|+|.+|+.++.+.--.-..+..|.. . .+.
T Consensus 84 ~~pl~~~~~iRvKnE~~tl~~si~S~Lp-ai~~gVI~yNdc~D~t~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l 162 (347)
T PF06306_consen 84 KSPLNPWAFIRVKNEAMTLAESIESILP-AIDEGVIGYNDCTDGTEEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSL 162 (347)
T ss_pred CCCCCcceEEEEcchhhhHHHHHHHHHH-HHhccEEEeecCCCCHHHHHHHHHHhCcccccccCcchhhccCCchhhhhh
Confidence 3445567777899999999999999633 46999999999999999999988664210000111210 1 111
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEEEEeeeec
Q 008286 358 AGFSHNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVSIRCLDFG 419 (571)
Q Consensus 358 aa~ndcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~~~w~~Fg 419 (571)
..|-+-.+.-....+|++=+|+|-+..+. ..+..+---..+.+++.+++.+|.
T Consensus 163 ~~YYNy~ls~ipk~~w~iKID~DhIy~~~---------KL~ksfY~pk~~~~~v~YsRINF~ 215 (347)
T PF06306_consen 163 YNYYNYVLSFIPKNEWAIKIDADHIYDTK---------KLYKSFYIPKNDYDVVSYSRINFH 215 (347)
T ss_pred hhhhhhhhcccccceEEEEeccceeecHH---------HHhhhheeeccccceEEecceeEE
Confidence 11111112122467999999999999875 223332221235567776666653
No 55
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=95.74 E-value=0.11 Score=60.52 Aligned_cols=119 Identities=13% Similarity=0.202 Sum_probs=74.0
Q ss_pred CCceEEEEEEecchHH-----HHHHHHHHhhhcCc-c--EEEEEEcCCChhHHH--------HHHhhcCCCcEEEEEecC
Q 008286 288 PKSEICVCTMVYNVAK-----FVKEWVIYHTKIGV-E--KFILYDNGSEDDLQN--------VVNELNGDGYNVTTLLWI 351 (571)
Q Consensus 288 ~k~~IcVctivkNEa~-----~L~EwIeyH~~lGv-d--~f~IYDn~StD~t~e--------IL~~y~~~G~~Vt~i~Wp 351 (571)
....++|..-++||+. .|++.++.-..++- + +|+|.|++++|++.. +.++|...+ +|.+..=.
T Consensus 122 ~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~-~i~yr~R~ 200 (691)
T PRK05454 122 PEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEG-RIFYRRRR 200 (691)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCC-cEEEEECC
Confidence 4456788878999974 57777765433433 2 689999999988643 344453322 24443212
Q ss_pred CchhHH-HHHHHHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhh---hccCCccEEEEEeee
Q 008286 352 WPKTQE-AGFSHNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALI---PQLHSIGQVSIRCLD 417 (571)
Q Consensus 352 ~~~~Q~-aa~ndcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL---~~~p~i~~i~~~w~~ 417 (571)
.+..-+ ...++.+.+....+|||+.+|+|-.+.+. .|..++ +..|++|.++.+...
T Consensus 201 ~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d----------~L~~lv~~m~~dP~vGlVQt~~~~ 260 (691)
T PRK05454 201 RNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGD----------TLVRLVRLMEANPRAGLIQTLPVA 260 (691)
T ss_pred cCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHH----------HHHHHHHHHhhCcCEEEEeCCccC
Confidence 222223 34556566666789999999999998873 344444 345788888755443
No 56
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=95.32 E-value=0.092 Score=52.68 Aligned_cols=98 Identities=17% Similarity=0.099 Sum_probs=59.7
Q ss_pred EEEEecchH-HHHHHHHHHhhhcCcc------------EEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHH
Q 008286 294 VCTMVYNVA-KFVKEWVIYHTKIGVE------------KFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGF 360 (571)
Q Consensus 294 VctivkNEa-~~L~EwIeyH~~lGvd------------~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ 360 (571)
|++-++||+ +.|.+.|+.-..+-.. +|+|.++||+| .+.|- ...|...+
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d---------~~~gk---------~~~~~~~~ 62 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK---------KNRGK---------RDSQLWFF 62 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc---------ccCcc---------hHHHHHHH
Confidence 345589996 8999999986666554 78999999999 11221 01222112
Q ss_pred HHH-HHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEEEEee
Q 008286 361 SHN-AIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVSIRCL 416 (571)
Q Consensus 361 ndc-l~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~~~w~ 416 (571)
+-. ........+||+++|+|=.+.+. .-..+...+...|+++++.-...
T Consensus 63 ~~~~~~~~~a~~e~i~~~DaD~~~~~~-------~l~~l~~~~~~~p~vg~v~g~~~ 112 (244)
T cd04190 63 NYFCRVLFPDDPEFILLVDADTKFDPD-------SIVQLYKAMDKDPEIGGVCGEIH 112 (244)
T ss_pred HHHHHHhhcCCCCEEEEECCCCcCCHh-------HHHHHHHHHHhCCCEEEEEeeeE
Confidence 110 11124578999999999999763 12223333434567777655443
No 57
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=95.18 E-value=0.24 Score=50.68 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=66.9
Q ss_pred EEEEEecchHHH-HHHHHHHhhh----cCc---cEEEEEEcCCChhHHH--------HHHhhcCCCcEEEEEecCCchhH
Q 008286 293 CVCTMVYNVAKF-VKEWVIYHTK----IGV---EKFILYDNGSEDDLQN--------VVNELNGDGYNVTTLLWIWPKTQ 356 (571)
Q Consensus 293 cVctivkNEa~~-L~EwIeyH~~----lGv---d~f~IYDn~StD~t~e--------IL~~y~~~G~~Vt~i~Wp~~~~Q 356 (571)
+|..-++||... |.+.|+.... ++. =+|+|.|+++++.... +.+.+.+ +..|.++.=+...+-
T Consensus 2 SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~-~~~v~~~~r~~~~g~ 80 (254)
T cd04191 2 AIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGA-QGRIYYRRRRENTGR 80 (254)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCC-CCcEEEEEcCCCCCc
Confidence 566668898765 6666655321 232 2688888877765421 3344543 444544332222222
Q ss_pred H-HHHHHHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEEEEeeeec
Q 008286 357 E-AGFSHNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVSIRCLDFG 419 (571)
Q Consensus 357 ~-aa~ndcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~~~w~~Fg 419 (571)
+ +.++..+......+++|+++|+|-.+.|. .+...+ ..+.+.|+++.+..+...+.
T Consensus 81 Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~------~l~~~v-~~~~~~~~vg~vq~~~~~~n 137 (254)
T cd04191 81 KAGNIADFCRRWGSRYDYMVVLDADSLMSGD------TIVRLV-RRMEANPRAGIIQTAPKLIG 137 (254)
T ss_pred cHHHHHHHHHHhCCCCCEEEEEeCCCCCCHH------HHHHHH-HHHHhCCCEEEEeCCceeEC
Confidence 3 33444443323578999999999999874 122222 22333578888876665544
No 58
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=93.55 E-value=1.1 Score=46.19 Aligned_cols=90 Identities=13% Similarity=0.179 Sum_probs=52.1
Q ss_pred EEEEecchH------HHHHHHHHHhhh---cCccEEEEEEcCCChhHHHHHHhhcC-CCcEEEEEecCCc---hhHHHHH
Q 008286 294 VCTMVYNVA------KFVKEWVIYHTK---IGVEKFILYDNGSEDDLQNVVNELNG-DGYNVTTLLWIWP---KTQEAGF 360 (571)
Q Consensus 294 VctivkNEa------~~L~EwIeyH~~---lGvd~f~IYDn~StD~t~eIL~~y~~-~G~~Vt~i~Wp~~---~~Q~aa~ 360 (571)
|++-++|.. +.|..+|+.-.. ..--+|+|.|++|++.+.+.|+.+.+ .+. +.++.-... -.+..+.
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~-~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNGF-IRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccCc-eEEEEcCCCCCCcCHHHHH
Confidence 444466654 345444444322 12238999999999988666665644 343 323222211 1344444
Q ss_pred HHHHHHhcCCCcEEEEecCCceeecC
Q 008286 361 SHNAIHAKHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 361 ndcl~r~~~~~dWVlfiDaDEfL~p~ 386 (571)
|-.+. ...++||+|+|+|=++.+.
T Consensus 81 N~g~~--~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 81 NIGAK--YARGDYLIFLDADCIPSPD 104 (281)
T ss_pred HHHHH--HcCCCEEEEEcCCeeeCHH
Confidence 44443 3489999999999988763
No 59
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=93.33 E-value=0.56 Score=48.92 Aligned_cols=96 Identities=20% Similarity=0.241 Sum_probs=61.8
Q ss_pred CCCceEEEEEEecchHH----HHHHHHHHhhh--cC----ccEEEEEEcCCChhHHHHHHhhc-CCCc-EEEEEecCCch
Q 008286 287 EPKSEICVCTMVYNVAK----FVKEWVIYHTK--IG----VEKFILYDNGSEDDLQNVVNELN-GDGY-NVTTLLWIWPK 354 (571)
Q Consensus 287 ~~k~~IcVctivkNEa~----~L~EwIeyH~~--lG----vd~f~IYDn~StD~t~eIL~~y~-~~G~-~Vt~i~Wp~~~ 354 (571)
..++.++|++-.+||.. .|.|++.|... .+ =.+++|.|+||+|.|.+++-.|. +.|. ++-++..-.+.
T Consensus 64 ~~~~~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nr 143 (323)
T KOG2977|consen 64 PEKMYLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNR 143 (323)
T ss_pred hhhceeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccC
Confidence 35569999999999964 56888888443 23 35899999999999999988887 4554 34444332111
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEecCCceee
Q 008286 355 TQEAGFSHNAIHAKHSCKWMLYIDVDEFVY 384 (571)
Q Consensus 355 ~Q~aa~ndcl~r~~~~~dWVlfiDaDEfL~ 384 (571)
+.-.+...-++ ....+.++|.|+|----
T Consensus 144 gKGgAvR~g~l--~~rG~~ilfadAdGaTk 171 (323)
T KOG2977|consen 144 GKGGAVRKGML--SSRGQKILFADADGATK 171 (323)
T ss_pred CCCcceehhhH--hccCceEEEEcCCCCcc
Confidence 11111111121 22668899999996433
No 60
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=92.49 E-value=1.2 Score=44.01 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=61.6
Q ss_pred EEEEEEecchHHHHH--HHH--HHhhhcCcc-EEEEEEcCCChhHHHHHHhhcC--CCcEEEEEecCCchhHHHHHHHHH
Q 008286 292 ICVCTMVYNVAKFVK--EWV--IYHTKIGVE-KFILYDNGSEDDLQNVVNELNG--DGYNVTTLLWIWPKTQEAGFSHNA 364 (571)
Q Consensus 292 IcVctivkNEa~~L~--EwI--eyH~~lGvd-~f~IYDn~StD~t~eIL~~y~~--~G~~Vt~i~Wp~~~~Q~aa~ndcl 364 (571)
.+|..-++||-..|. -|+ .+....|.+ +++|.|++|-|+|.++++.+.+ -+.+|-..+=-...+--.||-|.+
T Consensus 5 YsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl 84 (238)
T KOG2978|consen 5 YSVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGL 84 (238)
T ss_pred eeEEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhh
Confidence 445555677754432 122 223334664 8999999999999999999653 123455443222222234455554
Q ss_pred HHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhcc
Q 008286 365 IHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQL 405 (571)
Q Consensus 365 ~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~ 405 (571)
. .+..++++.+|+|=-=.| ..|.++++..
T Consensus 85 ~--~a~g~fiviMDaDlsHhP----------k~ipe~i~lq 113 (238)
T KOG2978|consen 85 K--HATGDFIVIMDADLSHHP----------KFIPEFIRLQ 113 (238)
T ss_pred h--hccCCeEEEEeCccCCCc----------hhHHHHHHHh
Confidence 3 337899999999954443 4677877754
No 61
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=91.17 E-value=2.7 Score=45.06 Aligned_cols=114 Identities=11% Similarity=0.113 Sum_probs=71.8
Q ss_pred EEEEEEecchHHHHHHHHHHhhhc--Cc--cEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhH-----------
Q 008286 292 ICVCTMVYNVAKFVKEWVIYHTKI--GV--EKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQ----------- 356 (571)
Q Consensus 292 IcVctivkNEa~~L~EwIeyH~~l--Gv--d~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q----------- 356 (571)
+.|+.+++|-.+.|.+.|+.-..+ ++ .+++|+++|+.+++.++++.|.. + |..+..+..+..
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~-~--i~~i~~~~~~~~~~~~~~~~~~y 78 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGD-G--VTHIQHPPISIKNVNPPHKFQGY 78 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhcc-c--cEEEEcccccccccCcccccchh
Confidence 357778999999999998886554 44 48999999999999999988842 2 333322211101
Q ss_pred -------HHHHHHHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEEEE
Q 008286 357 -------EAGFSHNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVSIR 414 (571)
Q Consensus 357 -------~aa~ndcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~~~ 414 (571)
..+.+..+. ....+.++++|-|=.+.|.-- .--..+.++++..+.+.+|+-.
T Consensus 79 ~~ia~hyk~aln~vF~--~~~~~~vIILEDDl~~sPdFf----~yf~~~l~~y~~D~~v~~ISa~ 137 (334)
T cd02514 79 YRIARHYKWALTQTFN--LFGYSFVIILEDDLDIAPDFF----SYFQATLPLLEEDPSLWCISAW 137 (334)
T ss_pred hHHHHHHHHHHHHHHH--hcCCCEEEEECCCCccCHhHH----HHHHHHHHHHhcCCCEEEEEee
Confidence 013444433 236899999999988887400 0012233445555667776643
No 62
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=90.70 E-value=1.7 Score=51.13 Aligned_cols=98 Identities=6% Similarity=0.045 Sum_probs=65.3
Q ss_pred CCceEEEEEEecchHHHHHHHHHHhh-hcCc--cEEEEEEcCCChhHHHHHHhhcCC-CcEEEE--EecCCchhHHHHHH
Q 008286 288 PKSEICVCTMVYNVAKFVKEWVIYHT-KIGV--EKFILYDNGSEDDLQNVVNELNGD-GYNVTT--LLWIWPKTQEAGFS 361 (571)
Q Consensus 288 ~k~~IcVctivkNEa~~L~EwIeyH~-~lGv--d~f~IYDn~StD~t~eIL~~y~~~-G~~Vt~--i~Wp~~~~Q~aa~n 361 (571)
....++|..-.+||+..|.+.|++-. .+-- =+|++.++.++|.|.++++.+.+. +- +.. ..=++..+-..++|
T Consensus 61 ~~~~vsIlVPa~nE~~vi~~~i~~ll~~ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p~-~~~v~~~~~g~~gKa~aLN 139 (727)
T PRK11234 61 DEKPLAIMVPAWNETGVIGNMAELAATTLDYENYHIFVGTYPNDPATQADVDAVCARFPN-VHKVVCARPGPTSKADCLN 139 (727)
T ss_pred CCCCEEEEEecCcchhhHHHHHHHHHHhCCCCCeEEEEEecCCChhHHHHHHHHHHHCCC-cEEEEeCCCCCCCHHHHHH
Confidence 34567777779999999999998742 2222 167777778888999999888643 21 222 22233444445677
Q ss_pred HHHHHh-------cCCCcEEEEecCCceeecC
Q 008286 362 HNAIHA-------KHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 362 dcl~r~-------~~~~dWVlfiDaDEfL~p~ 386 (571)
+.+... ..+++.++++|+|-.+.|.
T Consensus 140 ~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd 171 (727)
T PRK11234 140 NVLDAITQFERSANFAFAGFILHDAEDVISPM 171 (727)
T ss_pred HHHHHHHhhhcccCCcccEEEEEcCCCCCChh
Confidence 665543 3356778889999999874
No 63
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=88.11 E-value=9.9 Score=39.60 Aligned_cols=110 Identities=17% Similarity=0.214 Sum_probs=68.6
Q ss_pred CCCceEEEEEEecchHHHHHHHHHHhhhcCcc----EEEEEEcCCC--hhHHHHHHhhcCC---------Cc-EEEEE--
Q 008286 287 EPKSEICVCTMVYNVAKFVKEWVIYHTKIGVE----KFILYDNGSE--DDLQNVVNELNGD---------GY-NVTTL-- 348 (571)
Q Consensus 287 ~~k~~IcVctivkNEa~~L~EwIeyH~~lGvd----~f~IYDn~St--D~t~eIL~~y~~~---------G~-~Vt~i-- 348 (571)
..+-.|-|++-++|.+.++.++.+.-..+--. .+-+..++++ |++.+.|+.+.+. .+ .|++.
T Consensus 22 ~~~e~VLILtplrna~~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~ 101 (269)
T PF03452_consen 22 RNKESVLILTPLRNAASFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRK 101 (269)
T ss_pred ccCCeEEEEEecCCchHHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcC
Confidence 45677888888999999999998875444332 3445566666 8888887754311 12 24433
Q ss_pred ecCC-----------chhHHH-------HHHHHHHHhcC-CCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhcc
Q 008286 349 LWIW-----------PKTQEA-------GFSHNAIHAKH-SCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQL 405 (571)
Q Consensus 349 ~Wp~-----------~~~Q~a-------a~ndcl~r~~~-~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~ 405 (571)
++.. ...|.. +=|.-+..+.. .++||+++|+|=...|+ ..|+++++..
T Consensus 102 df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~---------~lI~dli~~~ 168 (269)
T PF03452_consen 102 DFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPP---------TLIQDLIAHD 168 (269)
T ss_pred CCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCCh---------HHHHHHHhCC
Confidence 2211 112321 11222233334 78999999999987775 5788888854
No 64
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=70.25 E-value=69 Score=34.78 Aligned_cols=114 Identities=11% Similarity=0.074 Sum_probs=61.1
Q ss_pred ceEEEEEEecchHHHHH-HHHHHhhhcCccEEEEEEcCCCh-h---------HHHHHHhhcCCCcEEEEE--ec-CC---
Q 008286 290 SEICVCTMVYNVAKFVK-EWVIYHTKIGVEKFILYDNGSED-D---------LQNVVNELNGDGYNVTTL--LW-IW--- 352 (571)
Q Consensus 290 ~~IcVctivkNEa~~L~-EwIeyH~~lGvd~f~IYDn~StD-~---------t~eIL~~y~~~G~~Vt~i--~W-p~--- 352 (571)
-.|-=|.++.||.+.|+ .+-|.+ -=||.|+|+.++.|- + ..+-.+.+.++ |..+ +. +.
T Consensus 79 RrV~D~~~f~~ElDlLeiRl~eL~--~vVD~FVIvEs~~Tf~G~~KpL~f~~~~~~f~~~~~K---Iiy~~l~~~~~~g~ 153 (356)
T PF04724_consen 79 RRVYDCFLFNNELDLLEIRLNELY--DVVDYFVIVESNRTFTGKPKPLYFAENKERFAFFHDK---IIYVTLDDPPEKGR 153 (356)
T ss_pred CeEEEEEEeCChHHHHHHHHHHhh--CcceEEEEEEECCCcCCCCCCccHHHHHHHHHhhhcc---eEEEEecCcCCCCC
Confidence 34544566778988874 233322 238999999988771 1 23334444432 2222 21 11
Q ss_pred ------chhHHHHHHHHH-HHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhcc---CCccEEEEEeeeec
Q 008286 353 ------PKTQEAGFSHNA-IHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQL---HSIGQVSIRCLDFG 419 (571)
Q Consensus 353 ------~~~Q~aa~ndcl-~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~---p~i~~i~~~w~~Fg 419 (571)
...|..+++.-+ .......|-+++-|+||+..+. +|. +|+.. |..-.+++.+..|+
T Consensus 154 ~~~w~~E~~qR~~l~~l~~~~~~~~dDliivSDvDEIP~p~----------~l~-~Lr~cd~~p~~l~l~lr~y~Ys 219 (356)
T PF04724_consen 154 KDPWDRENYQRNALNGLLRLAGIQDDDLIIVSDVDEIPSPE----------TLK-FLRWCDGFPEPLHLRLRFYYYS 219 (356)
T ss_pred CchhHHHHHHHHHHHHHhhhcCCCCCCEEEEcCcccccCHH----------HHH-HHHhcCCCCCeeEEEeeceEEE
Confidence 123333331111 1244678999999999998873 443 34433 34445666655554
No 65
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=68.99 E-value=11 Score=38.75 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=27.4
Q ss_pred HHHHHhhhcCccEEE--EEEcCCChhHHHHHHhhc
Q 008286 307 EWVIYHTKIGVEKFI--LYDNGSEDDLQNVVNELN 339 (571)
Q Consensus 307 EwIeyH~~lGvd~f~--IYDn~StD~t~eIL~~y~ 339 (571)
+.|+.-..+|-++++ ||.|+|.|+|.++|+.+.
T Consensus 22 ~ll~li~~LGp~nv~vSIyE~~S~D~T~~~L~~L~ 56 (241)
T PF11735_consen 22 ALLELIRFLGPENVFVSIYESGSWDGTKEALRALD 56 (241)
T ss_pred HHHHHHHHhCcCeEEEEEEeCCCCccHHHHHHHHH
Confidence 455555568999888 999999999999998775
No 66
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=67.95 E-value=39 Score=39.88 Aligned_cols=98 Identities=3% Similarity=0.006 Sum_probs=59.7
Q ss_pred CceEEEEEEecchHHHHHHHHHHhh-hcCcc--EEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCC--chhHHHHHHHH
Q 008286 289 KSEICVCTMVYNVAKFVKEWVIYHT-KIGVE--KFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIW--PKTQEAGFSHN 363 (571)
Q Consensus 289 k~~IcVctivkNEa~~L~EwIeyH~-~lGvd--~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~--~~~Q~aa~ndc 363 (571)
...++|.+-.+||+..|.+.|++-. .+--. +|+|.....+++|.++++.+...--.++.+.-|. ..+--.++|..
T Consensus 70 ~~~vsIlVPa~nE~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~~gp~gKa~ALN~~ 149 (703)
T PRK15489 70 EQPLAIMVPAWKEYDVIAKMIENMLATLDYRRYVIFVGTYPNDAETITEVERMRRRYKRLVRVEVPHDGPTCKADCLNWI 149 (703)
T ss_pred CCceEEEEeCCCcHHHHHHHHHHHHhcCCCCCeEEEEEecCCCccHHHHHHHHhccCCcEEEEEcCCCCCCCHHHHHHHH
Confidence 3477888889999999999999842 33322 4444222333478888887754311244433333 33334556665
Q ss_pred HHHh-------cCCCcEEEEecCCceeecC
Q 008286 364 AIHA-------KHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 364 l~r~-------~~~~dWVlfiDaDEfL~p~ 386 (571)
+... ..+.+-|+++|+|-.+.|.
T Consensus 150 l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~ 179 (703)
T PRK15489 150 IQAIFRYEAGHGIEFAGVILHDSEDVLHPL 179 (703)
T ss_pred HHHHHhhhhhccCccceEEEEcCCCCCChh
Confidence 5432 2234559999999999985
No 67
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=67.57 E-value=30 Score=36.06 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=59.6
Q ss_pred CCCceEEEEEE-ecchHHHHHHHHHH---hhhcCcc-EEEEEEcCCChhHHHHHHhhcC-CCcEEEE----EecCCchhH
Q 008286 287 EPKSEICVCTM-VYNVAKFVKEWVIY---HTKIGVE-KFILYDNGSEDDLQNVVNELNG-DGYNVTT----LLWIWPKTQ 356 (571)
Q Consensus 287 ~~k~~IcVcti-vkNEa~~L~EwIey---H~~lGvd-~f~IYDn~StD~t~eIL~~y~~-~G~~Vt~----i~Wp~~~~Q 356 (571)
+.+.+|++..+ ++....++..|++. |.+.|.+ ++||+.+... ....+ .+.. .-+.|.. ..||...-.
T Consensus 31 ~~n~tIgl~vfatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~-~~p~v--~lg~~r~~~V~~v~~~~~W~~~sl~ 107 (271)
T cd02515 31 KQNITIGLTVFAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPA-AVPEV--ELGPGRRLTVLKIAEESRWQDISMR 107 (271)
T ss_pred hcCCEEEEEEEEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCcc-cCccc--ccCCCceeEEEEeccccCCcHHHHH
Confidence 45678887765 67888888887765 6677876 4445444222 21111 1111 0011221 245433211
Q ss_pred -HHHHH-HHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhc
Q 008286 357 -EAGFS-HNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQ 404 (571)
Q Consensus 357 -~aa~n-dcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~ 404 (571)
...+. ++..+...+.|+++|+|+|-.+.-. -+.++|.+++..
T Consensus 108 Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~------ig~E~Lg~lva~ 151 (271)
T cd02515 108 RMKTLADHIADRIGHEVDYLFCMDVDMVFQGP------FGVETLGDSVAQ 151 (271)
T ss_pred HHHHHHHHHHHhhcccCCEEEEeeCCceEeec------CCHHHhhhhhee
Confidence 12222 2333456799999999999988865 245666555443
No 68
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=64.92 E-value=48 Score=37.87 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=67.3
Q ss_pred CCceEEEEEEecchHH-----HHHHHHHHhhhcC----ccEEEEEEcCCCh-------hHHHHHHhhcCCCcEEEEEecC
Q 008286 288 PKSEICVCTMVYNVAK-----FVKEWVIYHTKIG----VEKFILYDNGSED-------DLQNVVNELNGDGYNVTTLLWI 351 (571)
Q Consensus 288 ~k~~IcVctivkNEa~-----~L~EwIeyH~~lG----vd~f~IYDn~StD-------~t~eIL~~y~~~G~~Vt~i~Wp 351 (571)
..++-++..-++||.. -|+..-|..+.-| +|-|++-|+...| ...++.++....| +|-+ .+.
T Consensus 142 ~~hrTAilmPiynEd~~rVfAgLrA~~eSla~Tg~~~~FD~FVLSDs~dpdialAEq~a~~~l~~e~~g~~-~ifY-RrR 219 (736)
T COG2943 142 DLHRTAILMPIYNEDVNRVFAGLRATYESLAATGHAEHFDFFVLSDSRDPDIALAEQKAWAELCRELGGEG-NIFY-RRR 219 (736)
T ss_pred cccceeEEeeccccCHHHHHHHHHHHHHHHHhhCCcccceEEEEcCCCCchhhhhHHHHHHHHHHHhCCCC-ceee-ehH
Confidence 3455555655889852 2444444433433 4544444443332 1233455555444 3443 222
Q ss_pred C--chhHHHHHHHHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEEE
Q 008286 352 W--PKTQEAGFSHNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVSI 413 (571)
Q Consensus 352 ~--~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~~ 413 (571)
. .+.....+.|...|-...+++++.+|+|-.+... -...|.++++..|++|-|+.
T Consensus 220 r~n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd-------~lvrLv~~ME~~P~aGlIQt 276 (736)
T COG2943 220 RRNVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGD-------CLVRLVRLMEANPDAGLIQT 276 (736)
T ss_pred hhhhcccccCHHHHHHHhCcccceEEEeecccccCch-------HHHHHHHHHhhCCCCceeec
Confidence 1 1112233566667788899999999999998874 23456777888899988764
No 69
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=56.69 E-value=1.2e+02 Score=28.95 Aligned_cols=81 Identities=10% Similarity=0.070 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCCCcEEEEecCCce
Q 008286 303 KFVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHSCKWMLYIDVDEF 382 (571)
Q Consensus 303 ~~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEf 382 (571)
..|...|+.....|+++++|..+...+...+.+......|..++.+.-+...++..++..++... ..+.++++++|-+
T Consensus 30 pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~--~~~~~lv~~~D~~ 107 (217)
T cd04181 30 PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKFGVNIEYVVQEEPLGTAGAVRNAEDFL--GDDDFLVVNGDVL 107 (217)
T ss_pred eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhhcCceEEEEeCCCCCccHHHHHHhhhhc--CCCCEEEEECCee
Confidence 44554555555679999999988766666665554322243344433222233333333332212 4688999999986
Q ss_pred eec
Q 008286 383 VYS 385 (571)
Q Consensus 383 L~p 385 (571)
+..
T Consensus 108 ~~~ 110 (217)
T cd04181 108 TDL 110 (217)
T ss_pred cCc
Confidence 543
No 70
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=54.16 E-value=22 Score=35.85 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=31.7
Q ss_pred HHHHHH-hcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEEE
Q 008286 361 SHNAIH-AKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVSI 413 (571)
Q Consensus 361 ndcl~r-~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~~ 413 (571)
.||+.. ...+++||+|+|+|=-++-++ ..|+++|. ++++.+-.
T Consensus 31 RHCvva~~L~~~~~vlflDaDigVvNp~--------~~iEefid--~~~Di~fy 74 (222)
T PF03314_consen 31 RHCVVAKILPEYDWVLFLDADIGVVNPN--------RRIEEFID--EGYDIIFY 74 (222)
T ss_pred HHHHHHHHhccCCEEEEEcCCceeecCc--------ccHHHhcC--CCCcEEEE
Confidence 688764 557899999999999888764 36889985 44554433
No 71
>KOG4735 consensus Extracellular protein with conserved cysteines [Function unknown]
Probab=49.59 E-value=27 Score=38.65 Aligned_cols=96 Identities=16% Similarity=0.268 Sum_probs=69.7
Q ss_pred hcCccEEEEEEcCCChhHHHHHHhhcCCC-cEEEEEecCC------------------chhHHHHHHHHHHHhcCCCcEE
Q 008286 314 KIGVEKFILYDNGSEDDLQNVVNELNGDG-YNVTTLLWIW------------------PKTQEAGFSHNAIHAKHSCKWM 374 (571)
Q Consensus 314 ~lGvd~f~IYDn~StD~t~eIL~~y~~~G-~~Vt~i~Wp~------------------~~~Q~aa~ndcl~r~~~~~dWV 374 (571)
..|..++.+|...+...+-++++.|...| + ++...|.. .+.|.++..+|+++....++++
T Consensus 143 ~~~s~~~~~~~vs~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~ep~~~vc~~~~~g~~~d~L~~~~E~~k~~ 221 (472)
T KOG4735|consen 143 RFGATHLHLYVVSCPESYFALLKEYEKLGNY-VTLPPWLPLKFRNTDEPYHEPNLNVELRNQAGAETDCLLQYKEAAKFI 221 (472)
T ss_pred hcCCeeEEEEEEEehHHHHHHHHHHHhcCCc-cccCCCcccccCCCCCCccCcccceEecccchhhhhHHHHHHHHHHHh
Confidence 45777999999999999999999998888 4 34445521 1357788899999999999999
Q ss_pred EEecCCceeecCCCCCCCCcHHHHHHhhhc---cCCccEEEEEee
Q 008286 375 LYIDVDEFVYSPSWHDSGPSKHLLKALIPQ---LHSIGQVSIRCL 416 (571)
Q Consensus 375 lfiDaDEfL~p~~~~~~~~~~~~L~dlL~~---~p~i~~i~~~w~ 416 (571)
.+.|.|-++.+... ....++++.. .+++..+.+..+
T Consensus 222 g~~~~~di~~~~~~------~~Y~~e~l~~y~~~~~v~~~~~~~~ 260 (472)
T KOG4735|consen 222 GFFDLDDILIPRNA------NTYDEEFLREYVGSGNIEVIFYQKR 260 (472)
T ss_pred ccccHhheeeeccC------chHHHHHHHHhhcCCCeeEEEeeee
Confidence 99999999988643 2333344443 355555555433
No 72
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=45.86 E-value=1.3e+02 Score=32.94 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=50.8
Q ss_pred eEEEEEEecchHHHHHHHHHHhhhcCccEEEEEEcCCC----hhH---HHHHHhhcC---C-CcEEEEEecCCc------
Q 008286 291 EICVCTMVYNVAKFVKEWVIYHTKIGVEKFILYDNGSE----DDL---QNVVNELNG---D-GYNVTTLLWIWP------ 353 (571)
Q Consensus 291 ~IcVctivkNEa~~L~EwIeyH~~lGvd~f~IYDn~St----D~t---~eIL~~y~~---~-G~~Vt~i~Wp~~------ 353 (571)
.++|++-++||.-.|.|=+-. .+=.+=.+|..+||+ |.. .++|+.+-+ + ++.|+. ..|+.
T Consensus 51 ~maIVVP~KnE~l~lleGVL~--gIPh~C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~r~~~~vHQ-kDp~lA~Af~~ 127 (381)
T PF09488_consen 51 KMAIVVPCKNEKLKLLEGVLS--GIPHDCLIIVVSNSSREPVDRFKMEVDLLKHFCRLTRRQIIIVHQ-KDPGLAEAFKE 127 (381)
T ss_dssp TEEEEEEESS--HHHHHHHHH--CS-TTSEEEEEE---CSSSCHHHHHHHHHHHHHHHCT--EEEEET-T-HHHHHHHHH
T ss_pred CcEEEEECCCCchhhhhhhhh--cCCCCCeEEEEECCCCCCccHHHHHHHHHHHHHHhhcCceEEEec-CCHHHHHHHHH
Confidence 577787899998777665543 333354555555555 322 345555422 2 111221 11110
Q ss_pred ---------------hhHHHHHHHHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhcc--------CCccE
Q 008286 354 ---------------KTQEAGFSHNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQL--------HSIGQ 410 (571)
Q Consensus 354 ---------------~~Q~aa~ndcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~--------p~i~~ 410 (571)
+.-+..+---++-.....+||.|+|+|-++. +++.++...+ .....
T Consensus 128 aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyiP-----------GaV~EYvk~yAAGf~ms~spytM 196 (381)
T PF09488_consen 128 AGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYIP-----------GAVNEYVKDYAAGFAMSESPYTM 196 (381)
T ss_dssp TT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS-H-----------HHHHHHHHHHHHHHHC-SSSCEE
T ss_pred cCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCCc-----------chHHHHHHHHHhhhcccCCCceE
Confidence 0011111111222336889999999999987 3465655532 35678
Q ss_pred EEEEeeee
Q 008286 411 VSIRCLDF 418 (571)
Q Consensus 411 i~~~w~~F 418 (571)
+++.|..-
T Consensus 197 VRi~W~~K 204 (381)
T PF09488_consen 197 VRIHWRSK 204 (381)
T ss_dssp EEEE----
T ss_pred EEEEecCC
Confidence 99999864
No 73
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=45.51 E-value=2.7e+02 Score=27.57 Aligned_cols=104 Identities=9% Similarity=0.049 Sum_probs=55.3
Q ss_pred EEEEEe-cchHHHHHHHHHHhhhcCccEEEEE-EcCCChhHHHHHHhhcCCCcEEEEE------ecCCchhHHHHHHHHH
Q 008286 293 CVCTMV-YNVAKFVKEWVIYHTKIGVEKFILY-DNGSEDDLQNVVNELNGDGYNVTTL------LWIWPKTQEAGFSHNA 364 (571)
Q Consensus 293 cVctiv-kNEa~~L~EwIeyH~~lGvd~f~IY-Dn~StD~t~eIL~~y~~~G~~Vt~i------~Wp~~~~Q~aa~ndcl 364 (571)
|-..++ +|..+.+..++..-. ..-..|+|+ |..+.+...+-++.+.+...+|..+ .|-+. .|..|.-.|+
T Consensus 2 Aylil~h~~~~~~~~~l~~~l~-~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r~~v~WG~~-S~v~A~l~ll 79 (244)
T PF02485_consen 2 AYLILAHKNDPEQLERLLRLLY-HPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKRVDVRWGGF-SLVEATLNLL 79 (244)
T ss_dssp EEEEEESS--HHHHHHHHHHH---TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS-----TTSH-HHHHHHHHHH
T ss_pred EEEEEecCCCHHHHHHHHHHhc-CCCCEEEEEEcCCCChHHHHHHHHhcccCCceeecccccccccCCc-cHHHHHHHHH
Confidence 444566 657888887777632 334556665 5555666666555543322235433 34332 4554444444
Q ss_pred HH---hcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccC
Q 008286 365 IH---AKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLH 406 (571)
Q Consensus 365 ~r---~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p 406 (571)
.. .....+|++++-.+.+..-+ ...|.++++..+
T Consensus 80 ~~al~~~~~~~y~~llSg~D~Pl~s--------~~~i~~~l~~~~ 116 (244)
T PF02485_consen 80 REALKRDGDWDYFILLSGQDYPLKS--------NEEIHEFLESNN 116 (244)
T ss_dssp HHHHHH-S---EEEEEETTEEESS---------HHHHHHHHHHTT
T ss_pred HHHHhcCCCCcEEEEcccccccccc--------hHHHHHHHHhcC
Confidence 33 23488999999999998864 467889998763
No 74
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.
Probab=44.72 E-value=64 Score=27.93 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=29.2
Q ss_pred ceEEEEEEeecCCCCCCCCCCceEEEEeecc-cccceeeceeeEEcCCCCCCC
Q 008286 197 DVVLFVKGVNARSRSRSPQPQDFMCVFGDAV-KTPVTSCTQEVFRCSHPELTA 248 (571)
Q Consensus 197 ~~vv~v~gi~~r~~~~~~~~~~~~C~f~~~~-~t~~~~~~q~vi~C~~P~~~~ 248 (571)
.+-|.|+|-|.+++ +.|+|+... -+ ....+..++|..|+.-.
T Consensus 16 Gt~VtI~GenF~~g--------l~V~FG~~~~w~--e~isp~~i~~~tPP~~~ 58 (85)
T cd01175 16 GATVIIIGDNFFDG--------LQVVFGTMLVWS--ELITPHAIRVQTPPRHI 58 (85)
T ss_pred CeEEEEECCCCCCC--------cEEEECCEeEEE--EEeccceEEEecCCCCC
Confidence 55688889887544 789999842 23 23445678999888654
No 75
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=43.61 E-value=1.7e+02 Score=32.09 Aligned_cols=115 Identities=14% Similarity=0.060 Sum_probs=61.6
Q ss_pred ceEEEEEEecchHHHHHHHHHHhhhcCccEEEEEEcCCC----hhH---HHHHHhhcC----CCcEEEEEecCCch--hH
Q 008286 290 SEICVCTMVYNVAKFVKEWVIYHTKIGVEKFILYDNGSE----DDL---QNVVNELNG----DGYNVTTLLWIWPK--TQ 356 (571)
Q Consensus 290 ~~IcVctivkNEa~~L~EwIeyH~~lGvd~f~IYDn~St----D~t---~eIL~~y~~----~G~~Vt~i~Wp~~~--~Q 356 (571)
..++|++-++||.-.|.|=+-. .+=-+-.+|.-+||. |.. .++++.+-+ .++.|+. ..|+.. -+
T Consensus 51 ~~mAIVVP~KdE~l~lleGVL~--gIPh~c~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t~r~~i~vHQ-kDp~la~Af~ 127 (393)
T PRK14503 51 GRMAIVVPVKNERLKLLEGVLK--GIPHECPIIVVSNSKREPPDRFKLEVDLVRHFYRLTQRPIIIVHQ-KDPGLAEALK 127 (393)
T ss_pred hCcEEEEEcCCCchhHHhhHhh--cCCCCCeEEEEeCCCCCCchHHHHHHHHHHHHHhhhcCceEEEEc-CCHHHHHHHH
Confidence 3577888899998777765543 233355666666664 221 234444422 2222332 222210 01
Q ss_pred -------------------HHHHHHHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhcc--------CCcc
Q 008286 357 -------------------EAGFSHNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQL--------HSIG 409 (571)
Q Consensus 357 -------------------~aa~ndcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~--------p~i~ 409 (571)
+..+--.++-.....+||.|+|+|-++.- .+.++...+ ....
T Consensus 128 ~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPG-----------aV~EYvk~yAAGf~ma~spyt 196 (393)
T PRK14503 128 EAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIPG-----------AVNEYVKIYAAGFLMAESPYT 196 (393)
T ss_pred HcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCCc-----------hHHHHHHHHHhhhcccCCCCc
Confidence 11111112223448899999999999874 355554432 2456
Q ss_pred EEEEEeeee
Q 008286 410 QVSIRCLDF 418 (571)
Q Consensus 410 ~i~~~w~~F 418 (571)
.+++.|..-
T Consensus 197 MVRi~W~~K 205 (393)
T PRK14503 197 MVRIHWRYK 205 (393)
T ss_pred eEEEEecCC
Confidence 788888763
No 76
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=42.11 E-value=1.8e+02 Score=31.67 Aligned_cols=115 Identities=12% Similarity=0.064 Sum_probs=61.2
Q ss_pred ceEEEEEEecchHHHHHHHHHHhhhcCccEEEEEEcCCC----hhH---HHHHHhhc----CCCcEEEEEecCCch----
Q 008286 290 SEICVCTMVYNVAKFVKEWVIYHTKIGVEKFILYDNGSE----DDL---QNVVNELN----GDGYNVTTLLWIWPK---- 354 (571)
Q Consensus 290 ~~IcVctivkNEa~~L~EwIeyH~~lGvd~f~IYDn~St----D~t---~eIL~~y~----~~G~~Vt~i~Wp~~~---- 354 (571)
..++|++-++||.-.|.|=+-. .+=-+-.+|.-+||+ |.. .++++.+- +.++.|+. ..|+..
T Consensus 50 ~~maIVVP~KdE~l~lleGVL~--gIPh~c~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t~r~~i~vHQ-kDp~la~Af~ 126 (381)
T TIGR02460 50 GKTAIVVPVKNEKLHLLEGVLS--GIPHECPIIIVSNSKREPPDRFKMEVDLIRHFSNLTHRKIIIIHQ-KDPALAEAFK 126 (381)
T ss_pred hCcEEEEEcCCCchhHHhhHhh--cCCCCCeEEEEeCCCCCChhHHHHHHHHHHHHHHhhcCceEEEEc-CCHHHHHHHH
Confidence 3577888899998777765543 233355566666664 221 23444442 22222332 222210
Q ss_pred -----------------hHHHHHHHHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhcc--------CCcc
Q 008286 355 -----------------TQEAGFSHNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQL--------HSIG 409 (571)
Q Consensus 355 -----------------~Q~aa~ndcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~--------p~i~ 409 (571)
.-+..+--.++-.....+||.|+|+|-++.- ++.++...+ ....
T Consensus 127 ~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPG-----------aV~EYvk~yAaGf~ma~spy~ 195 (381)
T TIGR02460 127 EVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFPG-----------AVNEYVKIYAAGFLMATSPYS 195 (381)
T ss_pred HcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCCc-----------hHHHHHHHHHhhhcccCCCCe
Confidence 0011111112223448899999999999874 355554432 2456
Q ss_pred EEEEEeeee
Q 008286 410 QVSIRCLDF 418 (571)
Q Consensus 410 ~i~~~w~~F 418 (571)
.+++.|..-
T Consensus 196 MVRi~W~~K 204 (381)
T TIGR02460 196 MVRIHWRYK 204 (381)
T ss_pred eEEEEecCC
Confidence 788888763
No 77
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=41.39 E-value=80 Score=31.52 Aligned_cols=48 Identities=13% Similarity=0.327 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEEE
Q 008286 358 AGFSHNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVSI 413 (571)
Q Consensus 358 aa~ndcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~~ 413 (571)
++||.++.+ ...++++|+.-|=+|...+ +...|.+.+++.+++|.+.+
T Consensus 44 ~~yN~a~~~--a~~~ylvflHqDv~i~~~~------~l~~il~~~~~~~~~G~iGv 91 (217)
T PF13712_consen 44 AAYNEAMEK--AKAKYLVFLHQDVFIINEN------WLEDILEIFEEDPNIGMIGV 91 (217)
T ss_dssp THHHHHGGG----SSEEEEEETTEE-SSHH------HHHHHHHHHHH-TTEEEEES
T ss_pred HHHHHHHHh--CCCCEEEEEeCCeEEcchh------HHHHHHHHHhhCCCccEEEe
Confidence 567777654 5677999999999998653 34566666755678777654
No 78
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=41.34 E-value=1.5e+02 Score=28.68 Aligned_cols=77 Identities=6% Similarity=-0.019 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCCCcEEEEecCCce
Q 008286 303 KFVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHSCKWMLYIDVDEF 382 (571)
Q Consensus 303 ~~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEf 382 (571)
..|...|+.....|+++++|..+...+...+.+..+ |+ +.+.-+...+...++.+++.......+.++++++|.-
T Consensus 27 pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~~---~~--~~~~~~~~~g~~~ai~~a~~~~~~~~~~vli~~~D~p 101 (229)
T cd02540 27 PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANP---NV--EFVLQEEQLGTGHAVKQALPALKDFEGDVLVLYGDVP 101 (229)
T ss_pred cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCCC---Cc--EEEECCCCCCCHHHHHHHHHhhccCCCeEEEEeCCcc
Confidence 444445555555789998888876555555555432 33 2222122223444445454432223688999999994
Q ss_pred ee
Q 008286 383 VY 384 (571)
Q Consensus 383 L~ 384 (571)
+.
T Consensus 102 ~~ 103 (229)
T cd02540 102 LI 103 (229)
T ss_pred cc
Confidence 44
No 79
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=38.57 E-value=2.6e+02 Score=27.91 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=51.9
Q ss_pred EEEEecchHHHHHHHHHHhhhcCccEEEEEEcCCC---------------hhHHHHHHhhcCCCcEEEEEecCCch--hH
Q 008286 294 VCTMVYNVAKFVKEWVIYHTKIGVEKFILYDNGSE---------------DDLQNVVNELNGDGYNVTTLLWIWPK--TQ 356 (571)
Q Consensus 294 VctivkNEa~~L~EwIeyH~~lGvd~f~IYDn~St---------------D~t~eIL~~y~~~G~~Vt~i~Wp~~~--~Q 356 (571)
+.+++.|-.+.+.... ..|++.+.|++..|+ +...+.++...+.|+.+......... .-
T Consensus 69 ~~~l~~~~~~~i~~a~----~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~ 144 (265)
T cd03174 69 LQALVRNREKGIERAL----EAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTD 144 (265)
T ss_pred EEEEccCchhhHHHHH----hCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCC
Confidence 3345566444444444 458999999998872 55566677777778754432211111 11
Q ss_pred HHHHHHHHHH-hcCCCcEEEEecCCceeecC
Q 008286 357 EAGFSHNAIH-AKHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 357 ~aa~ndcl~r-~~~~~dWVlfiDaDEfL~p~ 386 (571)
..-+.+.+.. .....+++-+.|....+.|.
T Consensus 145 ~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~ 175 (265)
T cd03174 145 PEYVLEVAKALEEAGADEISLKDTVGLATPE 175 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEechhcCCcCHH
Confidence 1111222222 34568999999999988885
No 80
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=36.68 E-value=3.8e+02 Score=25.50 Aligned_cols=78 Identities=10% Similarity=0.171 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCCCcEEEEecCCcee
Q 008286 304 FVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHSCKWMLYIDVDEFV 383 (571)
Q Consensus 304 ~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEfL 383 (571)
.|.-.|+.-...|+++++|..+...+...+.+.....-|..+....-....+...++..++ ... ..++++++.+|.++
T Consensus 31 li~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~a~-~~~-~~~~~lv~~~D~~~ 108 (223)
T cd06915 31 FLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNAL-PKL-PEDQFLVLNGDTYF 108 (223)
T ss_pred hHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCccccCceEEEEECCCCCcchHHHHHHH-hhc-CCCCEEEEECCccc
Confidence 3333344333468999999887655555555543211133232211011111112222222 122 46899999999966
No 81
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=35.23 E-value=2.4e+02 Score=25.65 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCCCcEEEEecCCce
Q 008286 303 KFVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHSCKWMLYIDVDEF 382 (571)
Q Consensus 303 ~~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEf 382 (571)
..|...|+-....|+++|+|..+. +...+. +...++.+...+ .+..+...++...+. .....+|++++-+|=.
T Consensus 25 ~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~---~~~~~~~~v~~~-~~~~G~~~sl~~a~~-~~~~~~~vlv~~~D~p 97 (160)
T PF12804_consen 25 PLIERVLEALREAGVDDIVVVTGE--EEIYEY---LERYGIKVVVDP-EPGQGPLASLLAALS-QLPSSEPVLVLPCDQP 97 (160)
T ss_dssp EHHHHHHHHHHHHTESEEEEEEST--HHHHHH---HTTTTSEEEE-S-TSSCSHHHHHHHHHH-TSTTSSEEEEEETTET
T ss_pred cHHHHHHHHhhccCCceEEEecCh--HHHHHH---HhccCceEEEec-cccCChHHHHHHHHH-hcccCCCcEEEeCCcc
Confidence 445445555556789999999988 444333 333454222211 122333333333332 2228899999999995
Q ss_pred eecCCCCCCCCcHHHHHHhhhc
Q 008286 383 VYSPSWHDSGPSKHLLKALIPQ 404 (571)
Q Consensus 383 L~p~~~~~~~~~~~~L~dlL~~ 404 (571)
+... ..+..+++.
T Consensus 98 ~~~~---------~~l~~l~~~ 110 (160)
T PF12804_consen 98 FLSP---------ELLRRLLEA 110 (160)
T ss_dssp TS-H---------HHHHHHHHH
T ss_pred ccCH---------HHHHHHHHH
Confidence 5432 456666654
No 82
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=34.12 E-value=4.7e+02 Score=25.83 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhcCccEEEEEEcCCC---------------hhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHH-h
Q 008286 304 FVKEWVIYHTKIGVEKFILYDNGSE---------------DDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIH-A 367 (571)
Q Consensus 304 ~L~EwIeyH~~lGvd~f~IYDn~St---------------D~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r-~ 367 (571)
.+...++-....|++.+.+++.-|+ +...+.++...+.|+.|..-.......-..-+.+++.+ .
T Consensus 68 ~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~ 147 (237)
T PF00682_consen 68 DIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALA 147 (237)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHH
T ss_pred HHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHH
Confidence 3444444334579999999998876 34555666666678766443322222111112222222 2
Q ss_pred cCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEEEEeee
Q 008286 368 KHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVSIRCLD 417 (571)
Q Consensus 368 ~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~~~w~~ 417 (571)
....++|.+.|.--.+.|.. -...+..+.+..++ ..+.++.|+
T Consensus 148 ~~g~~~i~l~Dt~G~~~P~~------v~~lv~~~~~~~~~-~~l~~H~Hn 190 (237)
T PF00682_consen 148 EAGADIIYLADTVGIMTPED------VAELVRALREALPD-IPLGFHAHN 190 (237)
T ss_dssp HHT-SEEEEEETTS-S-HHH------HHHHHHHHHHHSTT-SEEEEEEBB
T ss_pred HcCCeEEEeeCccCCcCHHH------HHHHHHHHHHhccC-CeEEEEecC
Confidence 34789999999999999852 12233333333455 566666554
No 83
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=32.84 E-value=2.6e+02 Score=25.85 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=43.1
Q ss_pred HHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCC-chhHHHHHHHHHHHhcCCCcEEEEecCCcee
Q 008286 305 VKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIW-PKTQEAGFSHNAIHAKHSCKWMLYIDVDEFV 383 (571)
Q Consensus 305 L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~-~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEfL 383 (571)
|..-|+-.+..|+++++|..+...+...+. +...|. ..+..+. ..+...++..++.......+|++++.+|--+
T Consensus 29 i~~~i~~l~~~~~~~i~vv~~~~~~~~~~~---~~~~~~--~~~~~~~~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P~ 103 (186)
T cd04182 29 LRHALDAALAAGLSRVIVVLGAEADAVRAA---LAGLPV--VVVINPDWEEGMSSSLAAGLEALPADADAVLILLADQPL 103 (186)
T ss_pred HHHHHHHHHhCCCCcEEEECCCcHHHHHHH---hcCCCe--EEEeCCChhhCHHHHHHHHHHhccccCCEEEEEeCCCCC
Confidence 333344444457899998876543333222 222232 2222221 1223333333333222247999999999855
Q ss_pred ecCCCCCCCCcHHHHHHhhhc
Q 008286 384 YSPSWHDSGPSKHLLKALIPQ 404 (571)
Q Consensus 384 ~p~~~~~~~~~~~~L~dlL~~ 404 (571)
... ..+..+++.
T Consensus 104 i~~---------~~i~~l~~~ 115 (186)
T cd04182 104 VTA---------ETLRALIDA 115 (186)
T ss_pred CCH---------HHHHHHHHH
Confidence 443 346565554
No 84
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.43 E-value=1.8e+02 Score=32.29 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=54.1
Q ss_pred CCCCceEEEEEEecchH-HHHHHHHHHhhh----cCccEEEEEEcCCC-hhHHHHHHhhcC--CCcEEEEEecCCchhHH
Q 008286 286 QEPKSEICVCTMVYNVA-KFVKEWVIYHTK----IGVEKFILYDNGSE-DDLQNVVNELNG--DGYNVTTLLWIWPKTQE 357 (571)
Q Consensus 286 ~~~k~~IcVctivkNEa-~~L~EwIeyH~~----lGvd~f~IYDn~St-D~t~eIL~~y~~--~G~~Vt~i~Wp~~~~Q~ 357 (571)
+..-.+.+|++.+.||+ ..|...+-.-.. --..+|+++|+.|+ +.+.+-|++|.. .|. |.++.- .|.
T Consensus 151 pe~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~fnGl-VkV~Rn----e~R 225 (603)
T KOG3737|consen 151 PENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNGL-VKVFRN----ERR 225 (603)
T ss_pred cccCCcceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHhcCE-EEEEec----chh
Confidence 34556788888899996 223323322111 12457999999998 677888888866 465 554421 121
Q ss_pred HHHHHHHHH--hcCCCcEEEEecCCceee
Q 008286 358 AGFSHNAIH--AKHSCKWMLYIDVDEFVY 384 (571)
Q Consensus 358 aa~ndcl~r--~~~~~dWVlfiDaDEfL~ 384 (571)
.++-.+.-+ .....+=++|+|+-=-+.
T Consensus 226 EGLI~aRSiGA~~atGeV~ifLDAHCEVn 254 (603)
T KOG3737|consen 226 EGLIQARSIGAQKATGEVLIFLDAHCEVN 254 (603)
T ss_pred hhhhhhhccchhhccccEEEEEecceeee
Confidence 111111100 123678999999975443
No 85
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=31.00 E-value=2.7e+02 Score=33.01 Aligned_cols=115 Identities=13% Similarity=0.083 Sum_probs=62.4
Q ss_pred ceEEEEEEecchHHHHHHHHHHhhhcCccEEEEEEcCCC----hhH---HHHHHhhcC----CCcEEEEEecCCch--hH
Q 008286 290 SEICVCTMVYNVAKFVKEWVIYHTKIGVEKFILYDNGSE----DDL---QNVVNELNG----DGYNVTTLLWIWPK--TQ 356 (571)
Q Consensus 290 ~~IcVctivkNEa~~L~EwIeyH~~lGvd~f~IYDn~St----D~t---~eIL~~y~~----~G~~Vt~i~Wp~~~--~Q 356 (571)
..++|++-++||.-.|.|=+-. .+=-+-.+|..+||+ |.. .++++.+-+ .++.|+. ..|+.. -+
T Consensus 55 ~~~aivvp~k~e~~~~~~gvl~--~ip~~c~ii~vsns~r~~~d~~~~e~~~~~~~~~~~~~~~~~vhq-~dp~~a~a~~ 131 (694)
T PRK14502 55 KKMAIVLPIKDEDLKVFEGVLS--GIPHDCLMIVISNSSKQEVDNFKNEKDIVNRFCRITHRQAIVVHQ-KNPELANAIA 131 (694)
T ss_pred hCcEEEEEcCCCchhHHhhHhh--cCCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHHhhcCceEEEEc-CCHHHHHHHH
Confidence 3578888899998777665543 233455666667775 322 234444422 2222332 222210 00
Q ss_pred -------------------HHHHHHHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhcc--------CCcc
Q 008286 357 -------------------EAGFSHNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQL--------HSIG 409 (571)
Q Consensus 357 -------------------~aa~ndcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~--------p~i~ 409 (571)
+..+--.++-.....+||.|+|+|-++.- .+.++...+ ....
T Consensus 132 ~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~pg-----------~v~ey~~~yaag~~~~~~~~~ 200 (694)
T PRK14502 132 DAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIPG-----------AVWEYAKHFATGFNLAQSPYS 200 (694)
T ss_pred HcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCCc-----------hHHHHHHHHHhhhcccCCCCe
Confidence 11111112223458899999999999873 355554432 2356
Q ss_pred EEEEEeeee
Q 008286 410 QVSIRCLDF 418 (571)
Q Consensus 410 ~i~~~w~~F 418 (571)
.+++.|..-
T Consensus 201 mvri~w~~k 209 (694)
T PRK14502 201 MVRILWKYK 209 (694)
T ss_pred eEEEEecCC
Confidence 788888753
No 86
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=29.70 E-value=3.5e+02 Score=25.61 Aligned_cols=91 Identities=10% Similarity=-0.009 Sum_probs=47.4
Q ss_pred HHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhh-cCCCcEEEEEecCCchhHHHHHHHHHHHh-cCCCcEEEEecCCc
Q 008286 304 FVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNEL-NGDGYNVTTLLWIWPKTQEAGFSHNAIHA-KHSCKWMLYIDVDE 381 (571)
Q Consensus 304 ~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y-~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~-~~~~dWVlfiDaDE 381 (571)
.|...|+--...++++++|..+...+....+.+.. ...|+.+.. ...+..++..+...++... ....+|++++++|=
T Consensus 28 ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~ 106 (190)
T TIGR03202 28 LGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLLADERIMLVC-CRDACEGQAHSLKCGLRKAEAMGADAVVILLADQ 106 (190)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhhcCCCeEEEE-CCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCC
Confidence 33333533334589999999876543322222221 223432221 1112223444444444322 23689999999998
Q ss_pred eeecCCCCCCCCcHHHHHHhhhc
Q 008286 382 FVYSPSWHDSGPSKHLLKALIPQ 404 (571)
Q Consensus 382 fL~p~~~~~~~~~~~~L~dlL~~ 404 (571)
=+... ..|..+++.
T Consensus 107 P~v~~---------~~i~~L~~~ 120 (190)
T TIGR03202 107 PFLTA---------DVINALLAL 120 (190)
T ss_pred CCCCH---------HHHHHHHHH
Confidence 77754 456666654
No 87
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=27.74 E-value=5.3e+02 Score=24.45 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=44.1
Q ss_pred hcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCCCcEEEEecCCceeecCCCCCCCC
Q 008286 314 KIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGP 393 (571)
Q Consensus 314 ~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~ 393 (571)
..++++++|+.+ .+...+.+.. .|+ +.+.-+.. +...++..++......++|++++-+|-=+...
T Consensus 42 ~~~~~~vvvv~~--~~~~~~~~~~---~~v--~~i~~~~~-G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~------- 106 (195)
T TIGR03552 42 GAGAGAVLVVSP--DPALLEAARN---LGA--PVLRDPGP-GLNNALNAALAEAREPGGAVLILMADLPLLTP------- 106 (195)
T ss_pred hcCCCCEEEECC--CHHHHHHHHh---cCC--EEEecCCC-CHHHHHHHHHHHhhccCCeEEEEeCCCCCCCH-------
Confidence 345677777655 2334343333 343 22221211 33444444444333456799999999776653
Q ss_pred cHHHHHHhhhccCCccEEEEE
Q 008286 394 SKHLLKALIPQLHSIGQVSIR 414 (571)
Q Consensus 394 ~~~~L~dlL~~~p~i~~i~~~ 414 (571)
..|+++++.....+.+-.+
T Consensus 107 --~~i~~l~~~~~~~~~vi~p 125 (195)
T TIGR03552 107 --RELKRLLAAATEGDVVIAP 125 (195)
T ss_pred --HHHHHHHHhcccCCEEEEe
Confidence 5677777754333333333
No 88
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=27.02 E-value=84 Score=38.29 Aligned_cols=57 Identities=25% Similarity=0.549 Sum_probs=40.8
Q ss_pred cCCceEEEEEEeecCCCCCCCCCCceEEEEeecccccceeeceeeEEcCCCCCCCCCCCCCCCeEEEEEEe
Q 008286 194 TEDDVVLFVKGVNARSRSRSPQPQDFMCVFGDAVKTPVTSCTQEVFRCSHPELTAFTSGTDQPIKMSLQIM 264 (571)
Q Consensus 194 ~~~~~vv~v~gi~~r~~~~~~~~~~~~C~f~~~~~t~~~~~~q~vi~C~~P~~~~~~~~~~~~i~VSl~~~ 264 (571)
-++.|.|+|+|- ..+. ..+.+.|.|+ ....++..+...|++|-.|+ .. +..|.+.+.
T Consensus 417 ~~ggvKVlV~G~--~~~~---~~~~ysc~Fg-~~~VPAeliq~GVLrC~~P~-h~-------~G~V~l~V~ 473 (975)
T KOG0520|consen 417 LDGGVKVLVTGF--PQDE---TRSNYSCMFG-EQRVPAELIQEGVLRCYAPP-HE-------PGVVNLQVT 473 (975)
T ss_pred CCCCcEEEEecC--cccc---CCCceEEEeC-CccccHHHhhcceeeeecCc-cC-------CCeEEEEEE
Confidence 466789999997 2222 4467999999 55667777888999999998 33 445555543
No 89
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=26.67 E-value=4.2e+02 Score=24.65 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=42.7
Q ss_pred HHHHHHH-HhhhcCccEEEEEEcCCChhHHHHHHhhcC-CCcEEEEEecC-CchhHHHHHHHHHHHhcCCCcEEEEecCC
Q 008286 304 FVKEWVI-YHTKIGVEKFILYDNGSEDDLQNVVNELNG-DGYNVTTLLWI-WPKTQEAGFSHNAIHAKHSCKWMLYIDVD 380 (571)
Q Consensus 304 ~L~EwIe-yH~~lGvd~f~IYDn~StD~t~eIL~~y~~-~G~~Vt~i~Wp-~~~~Q~aa~ndcl~r~~~~~dWVlfiDaD 380 (571)
-|.+|+. .-...++++++|..+...+. +++.+.. .|+ +.+.-+ ...+...+...++. .....+|++++++|
T Consensus 26 pll~~~i~~l~~~~~~~iivv~~~~~~~---~~~~~~~~~~v--~~v~~~~~~~g~~~si~~~l~-~~~~~~~vlv~~~D 99 (188)
T TIGR03310 26 TILEHVVDNALRLFFDEVILVLGHEADE---LVALLANHSNI--TLVHNPQYAEGQSSSIKLGLE-LPVQSDGYLFLLGD 99 (188)
T ss_pred eHHHHHHHHHHHcCCCcEEEEeCCcHHH---HHHHhccCCCe--EEEECcChhcCHHHHHHHHhc-CCCCCCEEEEEeCC
Confidence 3333433 33335899998877665443 3333332 233 322211 11122223332222 23357899999999
Q ss_pred ceeecCCCCCCCCcHHHHHHhhhc
Q 008286 381 EFVYSPSWHDSGPSKHLLKALIPQ 404 (571)
Q Consensus 381 EfL~p~~~~~~~~~~~~L~dlL~~ 404 (571)
--+..+ ..|..+++.
T Consensus 100 ~P~i~~---------~~i~~l~~~ 114 (188)
T TIGR03310 100 QPFVTP---------DIIQLLLEA 114 (188)
T ss_pred cCCCCH---------HHHHHHHHH
Confidence 855432 356666553
No 90
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=25.62 E-value=1.3e+02 Score=27.63 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhcCccEEEEEEcCCC-hhHHHHHHhhcCCCcEEEEE
Q 008286 303 KFVKEWVIYHTKIGVEKFILYDNGSE-DDLQNVVNELNGDGYNVTTL 348 (571)
Q Consensus 303 ~~L~EwIeyH~~lGvd~f~IYDn~St-D~t~eIL~~y~~~G~~Vt~i 348 (571)
+.|.+++.- .++|+++|-...++ +...++++.+.+.|.+|..+
T Consensus 131 ~~l~~~~~~---~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~~v 174 (175)
T PF13727_consen 131 DDLPELVRE---HDIDEVIIALPWSEEEQIKRIIEELENHGVRVRVV 174 (175)
T ss_dssp GGHHHHHHH---HT--EEEE--TTS-HHHHHHHHHHHHTTT-EEEE-
T ss_pred HHHHHHHHh---CCCCEEEEEcCccCHHHHHHHHHHHHhCCCEEEEe
Confidence 344556654 58999999988876 56778999999988766554
No 91
>PF08865 DUF1830: Domain of unknown function (DUF1830); InterPro: IPR014964 This group of short proteins is functionally uncharacterised.
Probab=25.54 E-value=69 Score=26.63 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=21.9
Q ss_pred ccCccccceeeEEcCCcEEEEEeCCCCC
Q 008286 88 VQDSAKYQSVSVLLPDWEVLVLLSPETS 115 (571)
Q Consensus 88 ~~~~~~~~~~~v~~p~~~~~~~~~~~~~ 115 (571)
+...+.+-.|+|+||-+.+++-..|++.
T Consensus 15 i~~~~~~y~ERVVFP~e~l~FeAp~~A~ 42 (68)
T PF08865_consen 15 IINIPNWYFERVVFPGERLLFEAPPEAR 42 (68)
T ss_pred EeCCCCceEEEEEcCCcEEEEEcCCCCE
Confidence 3445667799999999988887777774
No 92
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=23.74 E-value=3.8e+02 Score=26.56 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=53.5
Q ss_pred CCceEEEEEEecchHHHHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHh
Q 008286 288 PKSEICVCTMVYNVAKFVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHA 367 (571)
Q Consensus 288 ~k~~IcVctivkNEa~~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~ 367 (571)
.+..+-+-.|+.|..++|.++.+. |++.+.+.-. +++...++++...+.|..+=+.-+|...... +...
T Consensus 56 ~~~~~DvHLMv~~P~~~i~~~~~~----g~~~i~~H~E-~~~~~~~~i~~ik~~g~k~GialnP~T~~~~------~~~~ 124 (201)
T PF00834_consen 56 TDLPLDVHLMVENPERYIEEFAEA----GADYITFHAE-ATEDPKETIKYIKEAGIKAGIALNPETPVEE------LEPY 124 (201)
T ss_dssp SSSEEEEEEESSSGGGHHHHHHHH----T-SEEEEEGG-GTTTHHHHHHHHHHTTSEEEEEE-TTS-GGG------GTTT
T ss_pred CCCcEEEEeeeccHHHHHHHHHhc----CCCEEEEccc-chhCHHHHHHHHHHhCCCEEEEEECCCCchH------HHHH
Confidence 567889999999999988887764 9997777666 6667778888777777654444455432221 2223
Q ss_pred cCCCcEEEEecCC
Q 008286 368 KHSCKWMLYIDVD 380 (571)
Q Consensus 368 ~~~~dWVlfiDaD 380 (571)
....|+|+++=++
T Consensus 125 l~~vD~VlvMsV~ 137 (201)
T PF00834_consen 125 LDQVDMVLVMSVE 137 (201)
T ss_dssp GCCSSEEEEESS-
T ss_pred hhhcCEEEEEEec
Confidence 4567888777543
No 93
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=23.27 E-value=2.8e+02 Score=29.97 Aligned_cols=96 Identities=16% Similarity=0.273 Sum_probs=48.2
Q ss_pred CCCceEEEEEE-ecchHHHHHHHHHH---hhhcCcc-EEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCC-chhHH---
Q 008286 287 EPKSEICVCTM-VYNVAKFVKEWVIY---HTKIGVE-KFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIW-PKTQE--- 357 (571)
Q Consensus 287 ~~k~~IcVcti-vkNEa~~L~EwIey---H~~lGvd-~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~-~~~Q~--- 357 (571)
..+.+|++..+ ++....+|..|++. |...|.. ++||+.++.. ....| .+. .|-.+.++.-+. .+.|.
T Consensus 96 ~~n~tIGL~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~-~vP~i--~l~-~~r~~~V~~v~~~~~Wqd~sm 171 (337)
T PF03414_consen 96 QQNITIGLTVFATGKYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPS-KVPRI--ELG-PGRRLKVFEVQEEKRWQDISM 171 (337)
T ss_dssp HCT-EEEEEEEE-CCHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GG-GS---------TTEEEEEEE-SGGSSHHHHHH
T ss_pred hcCceEEEEEEecccHHHHHHHHHHhHHHhccCCcEEEEEEEeCchh-hCCcc--ccC-CCceeEEEEecccCCCccchh
Confidence 35567776654 57788898888776 6677876 3444443332 22222 111 122344332221 22332
Q ss_pred ---HHHHH-HHHHhcCCCcEEEEecCCceeecC
Q 008286 358 ---AGFSH-NAIHAKHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 358 ---aa~nd-cl~r~~~~~dWVlfiDaDEfL~p~ 386 (571)
..+.+ +..+...+.|+++++|+|-.+.-.
T Consensus 172 ~Rm~~i~~~i~~~~~~EvDYLFc~dvd~~F~~~ 204 (337)
T PF03414_consen 172 MRMEMISEHIEQHIQHEVDYLFCMDVDMVFQDH 204 (337)
T ss_dssp HHHHHHHHHHHHCHHHH-SEEEEEESSEEE-S-
T ss_pred HHHHHHHHHHHHHHhhcCCEEEEEecceEEecc
Confidence 22332 333346789999999999988654
No 94
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....
Probab=22.02 E-value=1.3e+02 Score=24.13 Aligned_cols=57 Identities=18% Similarity=0.330 Sum_probs=37.3
Q ss_pred ceEEEEEEeecCCCCCCCCCCceEEEEeecccccceeeceeeEEcCCCCCCCCCCCCCCCeEEEEEEe
Q 008286 197 DVVLFVKGVNARSRSRSPQPQDFMCVFGDAVKTPVTSCTQEVFRCSHPELTAFTSGTDQPIKMSLQIM 264 (571)
Q Consensus 197 ~~vv~v~gi~~r~~~~~~~~~~~~C~f~~~~~t~~~~~~q~vi~C~~P~~~~~~~~~~~~i~VSl~~~ 264 (571)
...|.|+|-|. .. +...+.|.|...............+.|..|.... ....|+|...
T Consensus 16 g~~ItI~G~~f----~~-~~~~~~v~i~~~~~~~~~~~~~~~i~c~~p~~~~------~~~~v~v~~~ 72 (85)
T PF01833_consen 16 GTNITITGSNF----GS-NSSNISVKIGGSQCTVITVVSSTQITCTSPALPS------GNVNVSVTVN 72 (85)
T ss_dssp TSEEEEEEESS----ES-SSTTEEEEETTEEEEEEGEEETTEEEEE--SCSS------EEEEEEEEET
T ss_pred CEEEEEEEEee----cc-cCCceEEEECCEeeeEEEEECCcEEEEEECCCCC------ccEEEEEEEC
Confidence 66789999988 33 5666999999743333325566789999999763 2555666655
No 95
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=21.77 E-value=4.6e+02 Score=28.50 Aligned_cols=78 Identities=8% Similarity=-0.011 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCCCcEEEEecCCce
Q 008286 303 KFVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHSCKWMLYIDVDEF 382 (571)
Q Consensus 303 ~~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEf 382 (571)
..|...|+.-...|+++++|+.....+...+.++.+. + +..+.-+...+...++..++.......++++++|+|.-
T Consensus 30 pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~--~--i~~v~~~~~~G~~~sv~~~~~~l~~~~~~vlV~~~D~P 105 (450)
T PRK14360 30 SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP--G--LEFVEQQPQLGTGHAVQQLLPVLKGFEGDLLVLNGDVP 105 (450)
T ss_pred hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC--C--eEEEEeCCcCCcHHHHHHHHHHhhccCCcEEEEeCCcc
Confidence 4444445554457999998888766555555544321 2 33322111122222222222111223468899999984
Q ss_pred ee
Q 008286 383 VY 384 (571)
Q Consensus 383 L~ 384 (571)
+.
T Consensus 106 ~i 107 (450)
T PRK14360 106 LL 107 (450)
T ss_pred cc
Confidence 43
No 96
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=21.18 E-value=7.3e+02 Score=23.71 Aligned_cols=91 Identities=13% Similarity=0.066 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhhcC-ccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhc-CCCcEEEEecCC
Q 008286 303 KFVKEWVIYHTKIG-VEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAK-HSCKWMLYIDVD 380 (571)
Q Consensus 303 ~~L~EwIeyH~~lG-vd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~-~~~dWVlfiDaD 380 (571)
..|...|+-....+ +++++|..+.......+-+..+.. +..+.... .+ ..+..++..++.... ...+|++++++|
T Consensus 29 pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~~~si~~al~~~~~~~~~~vlv~~~D 105 (218)
T cd02516 29 PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGL-SKVVKIVE-GG-ATRQDSVLNGLKALPDADPDIVLIHDAA 105 (218)
T ss_pred EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhccc-CCCeEEEC-Cc-hHHHHHHHHHHHhcccCCCCEEEEccCc
Confidence 34444444443445 899998876544333322222211 11133322 11 123333443433222 367999999999
Q ss_pred ceeecCCCCCCCCcHHHHHHhhhcc
Q 008286 381 EFVYSPSWHDSGPSKHLLKALIPQL 405 (571)
Q Consensus 381 EfL~p~~~~~~~~~~~~L~dlL~~~ 405 (571)
-=+..+ ..|+.+++..
T Consensus 106 ~P~i~~---------~~i~~li~~~ 121 (218)
T cd02516 106 RPFVSP---------ELIDRLIDAL 121 (218)
T ss_pred CCCCCH---------HHHHHHHHHH
Confidence 877754 5677777654
No 97
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=20.86 E-value=6.5e+02 Score=24.59 Aligned_cols=76 Identities=12% Similarity=0.181 Sum_probs=35.8
Q ss_pred HHHHHHHHhhhc-CccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCCCcEEEEecCCc-
Q 008286 304 FVKEWVIYHTKI-GVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHSCKWMLYIDVDE- 381 (571)
Q Consensus 304 ~L~EwIeyH~~l-Gvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~dWVlfiDaDE- 381 (571)
.|...|+.-... |+++++|.-+ .+...+.+..+ |..+....-....+ ...+..++.......++++.+++|-
T Consensus 28 ll~~~l~~l~~~~~i~~ivvv~~--~~~i~~~~~~~---~~~~~~~~~~~~~g-t~~~~~~~~~~~~~~d~vlv~~gD~P 101 (239)
T cd02517 28 MIQHVYERAKKAKGLDEVVVATD--DERIADAVESF---GGKVVMTSPDHPSG-TDRIAEVAEKLDADDDIVVNVQGDEP 101 (239)
T ss_pred HHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHHc---CCEEEEcCcccCch-hHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 333334443345 8999998653 24444444433 43333221111111 1122222222212248999999998
Q ss_pred eeec
Q 008286 382 FVYS 385 (571)
Q Consensus 382 fL~p 385 (571)
++.+
T Consensus 102 li~~ 105 (239)
T cd02517 102 LIPP 105 (239)
T ss_pred CCCH
Confidence 5543
No 98
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=20.28 E-value=3.7e+02 Score=26.67 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=39.8
Q ss_pred cEEEEEEcCCChhHHHHHHhhcCC-CcEEEEEec--CCch-h---H----HHHHHH-HHHHhcCCCcEEEEecCCceeec
Q 008286 318 EKFILYDNGSEDDLQNVVNELNGD-GYNVTTLLW--IWPK-T---Q----EAGFSH-NAIHAKHSCKWMLYIDVDEFVYS 385 (571)
Q Consensus 318 d~f~IYDn~StD~t~eIL~~y~~~-G~~Vt~i~W--p~~~-~---Q----~aa~nd-cl~r~~~~~dWVlfiDaDEfL~p 385 (571)
-+|+|+.++.++...+.|+.+... +..|+.++. +... . + ..+|.. .+.......+.|+++|+|-++.-
T Consensus 31 ~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~ 110 (248)
T cd04194 31 YDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDFKFFPATTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLG 110 (248)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHHhcCCcccccccHHHHHHHHHHHHhcccCEEEEEeCCEEecC
Confidence 378888888888888888887543 333444332 2110 0 1 111111 11112236999999999988874
No 99
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=20.10 E-value=4.7e+02 Score=28.43 Aligned_cols=80 Identities=5% Similarity=-0.027 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCCCcEEEEecCCc-
Q 008286 303 KFVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHSCKWMLYIDVDE- 381 (571)
Q Consensus 303 ~~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~dWVlfiDaDE- 381 (571)
..|...|+..+..|+++++|+.+...+...+.+..+.. +..+.....+ .+.. .++..++.......++++++++|-
T Consensus 34 pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~~-~~~~~~~~~~-~G~~-~sl~~a~~~l~~~~~~~lv~~~D~P 110 (446)
T PRK14353 34 PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKIAP-DAEIFVQKER-LGTA-HAVLAAREALAGGYGDVLVLYGDTP 110 (446)
T ss_pred hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhccCC-CceEEEcCCC-CCcH-HHHHHHHHHHhccCCCEEEEeCCcc
Confidence 34443444444579999999988766666665554421 1111111111 1111 112212111111357899999999
Q ss_pred eeec
Q 008286 382 FVYS 385 (571)
Q Consensus 382 fL~p 385 (571)
++.+
T Consensus 111 ~i~~ 114 (446)
T PRK14353 111 LITA 114 (446)
T ss_pred cCCH
Confidence 5443
Done!