Query 008286
Match_columns 571
No_of_seqs 292 out of 1286
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 22:36:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qg8_A Protein (spore coat pol 98.7 1.8E-07 6E-12 91.0 14.9 118 291-418 2-129 (255)
2 3bcv_A Putative glycosyltransf 98.5 4.5E-07 1.5E-11 87.1 10.7 94 290-386 5-100 (240)
3 3ckj_A Putative uncharacterize 98.3 8.4E-06 2.9E-10 83.7 13.9 116 288-414 46-169 (329)
4 2z86_A Chondroitin synthase; G 98.2 7.6E-06 2.6E-10 90.8 14.4 122 288-419 373-496 (625)
5 1xhb_A Polypeptide N-acetylgal 98.1 3.3E-05 1.1E-09 82.8 14.2 113 288-409 27-146 (472)
6 3f1y_A Mannosyl-3-phosphoglyce 98.0 3.3E-06 1.1E-10 89.6 5.2 92 289-385 93-195 (387)
7 4fix_A UDP-galactofuranosyl tr 98.0 4.3E-05 1.5E-09 86.3 13.6 114 288-412 178-303 (657)
8 2d7i_A Polypeptide N-acetylgal 97.9 6.4E-05 2.2E-09 83.2 13.0 110 289-407 111-226 (570)
9 2z86_A Chondroitin synthase; G 97.9 0.0001 3.4E-09 81.7 14.3 112 290-411 93-208 (625)
10 2ffu_A Ppgalnact-2, polypeptid 97.6 0.00047 1.6E-08 74.6 14.5 93 288-386 64-162 (501)
11 3l7i_A Teichoic acid biosynthe 97.6 8.8E-06 3E-10 92.5 0.0 94 291-386 3-99 (729)
12 4hg6_A Cellulose synthase subu 97.0 0.0022 7.7E-08 73.8 11.5 116 289-415 139-276 (802)
13 2wvl_A Mannosyl-3-phosphoglyce 96.6 0.0077 2.6E-07 63.2 10.2 121 289-418 52-204 (391)
14 2bo4_A Mannosylglycerate synth 96.5 0.005 1.7E-07 65.5 8.5 65 318-382 29-104 (397)
15 2nxv_A ATP synthase subunits r 96.1 0.014 4.9E-07 57.1 8.3 91 288-411 14-112 (249)
16 2zu9_A Mannosyl-3-phosphoglyce 94.4 0.083 2.8E-06 56.1 8.2 87 290-381 51-171 (394)
17 2fy7_A Beta-1,4-galactosyltran 92.5 0.35 1.2E-05 48.8 8.9 76 288-386 63-145 (287)
18 2l82_A Designed protein OR32; 80.5 5.2 0.00018 35.0 7.5 52 297-348 84-135 (162)
19 1fo8_A Alpha-1,3-mannosyl-glyc 77.5 8.5 0.00029 39.8 9.6 92 291-386 3-115 (343)
20 3tqd_A 3-deoxy-manno-octuloson 50.8 93 0.0032 30.2 10.7 71 309-385 41-112 (256)
21 3k8d_A 3-deoxy-manno-octuloson 48.7 1E+02 0.0035 30.1 10.7 81 309-404 50-131 (264)
22 3lw6_A FI08434P, beta-4-galact 47.8 78 0.0027 32.0 9.5 76 287-384 48-127 (287)
23 3oam_A 3-deoxy-manno-octuloson 46.4 1E+02 0.0036 29.4 10.1 85 305-404 30-115 (252)
24 2cxk_A Camta1, calmodulin bind 44.4 34 0.0012 28.7 5.4 45 195-246 20-64 (95)
25 4fcu_A 3-deoxy-manno-octuloson 43.1 1.1E+02 0.0036 29.8 9.6 70 310-385 35-105 (253)
26 2waw_A MOBA relate protein; un 37.8 66 0.0023 28.8 6.8 88 304-404 33-120 (199)
27 4ayl_A BOGT-metal-independent 37.1 91 0.0031 30.8 7.9 89 291-386 2-103 (246)
28 3f1c_A Putative 2-C-methyl-D-e 36.6 1.5E+02 0.005 28.1 9.4 90 304-405 34-130 (246)
29 1ezi_A CMP-N-acetylneuraminic 36.2 1.7E+02 0.0058 27.0 9.6 84 308-405 35-122 (228)
30 1h7e_A 3-deoxy-manno-octuloson 35.5 2E+02 0.0069 26.7 10.1 84 304-404 29-113 (245)
31 2wee_A MOBA-related protein; u 33.8 72 0.0025 28.6 6.4 88 304-404 33-120 (197)
32 4ecm_A Glucose-1-phosphate thy 32.2 3.4E+02 0.012 25.8 12.0 75 308-384 61-136 (269)
33 2l69_A Rossmann 2X3 fold prote 29.4 89 0.0031 26.5 5.5 62 288-350 47-109 (134)
34 4fce_A Bifunctional protein GL 28.0 1.1E+02 0.0039 31.4 7.5 89 304-407 38-126 (459)
35 1vic_A 3-deoxy-manno-octuloson 25.8 3.5E+02 0.012 25.5 10.0 86 304-404 29-115 (262)
36 1qwj_A Cytidine monophospho-N- 24.9 3E+02 0.01 25.5 9.2 81 308-404 34-119 (229)
37 1vgw_A 4-diphosphocytidyl-2C-m 24.8 2.3E+02 0.0079 25.9 8.3 88 304-405 36-129 (231)
38 2lci_A Protein OR36; structura 22.7 2.5E+02 0.0086 23.7 7.0 53 296-348 55-107 (134)
39 3ioh_A Histo-blood group ABO s 20.7 1E+02 0.0035 31.2 5.1 96 287-386 55-163 (298)
No 1
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=98.71 E-value=1.8e-07 Score=91.03 Aligned_cols=118 Identities=12% Similarity=0.107 Sum_probs=86.7
Q ss_pred eEEEEEEecchHHHHHHHHHHhhhcCcc--EEEEEEcCCChhHHHHHHhhcCCCcEEEEEecC--------CchhHHHHH
Q 008286 291 EICVCTMVYNVAKFVKEWVIYHTKIGVE--KFILYDNGSEDDLQNVVNELNGDGYNVTTLLWI--------WPKTQEAGF 360 (571)
Q Consensus 291 ~IcVctivkNEa~~L~EwIeyH~~lGvd--~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp--------~~~~Q~aa~ 360 (571)
.|+|++.++|++++|.++|+.-..+-.. +++|+|++|+|+|.++++.+.+.. .|.++.-+ ...+...+.
T Consensus 2 ~vSViIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~-~i~~i~~~~~~~~~~~~n~G~~~a~ 80 (255)
T 1qg8_A 2 KVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDN-RVRFYQSDISGVKERTEKTRYAALI 80 (255)
T ss_dssp CEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGST-TEEEEECCCCSHHHHHSSCHHHHHH
T ss_pred eEEEEEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcC-CEEEEecccccccccccccCHHHHH
Confidence 5788888999999999999997665442 899999999999999999996522 36666555 345566677
Q ss_pred HHHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEEEEeeee
Q 008286 361 SHNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVSIRCLDF 418 (571)
Q Consensus 361 ndcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~~~w~~F 418 (571)
|.++..+ ..+||+|+|.|.++.+. .-..+.+.+.+.|+++.+.-....+
T Consensus 81 N~gi~~a--~g~~i~~lD~Dd~~~~~-------~l~~~~~~~~~~~~~~~v~~~~~~~ 129 (255)
T 1qg8_A 81 NQAIEMA--EGEYITYATDDNIYMPD-------RLLKMVRELDTHPEKAVIYSASKTY 129 (255)
T ss_dssp HHHHHHC--CCSEEEEEETTEEECTT-------HHHHHHHHHHHCTTCCEEEEEEEEE
T ss_pred HHHHHHc--CCCEEEEeCCCCccChH-------HHHHHHHHHHhCCCceEEEeceEEE
Confidence 7777544 77999999999999764 2344555555556777665544433
No 2
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=98.50 E-value=4.5e-07 Score=87.14 Aligned_cols=94 Identities=18% Similarity=0.266 Sum_probs=71.9
Q ss_pred ceEEEEEEecchHHHHHHHHHHhhhcCcc--EEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHh
Q 008286 290 SEICVCTMVYNVAKFVKEWVIYHTKIGVE--KFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHA 367 (571)
Q Consensus 290 ~~IcVctivkNEa~~L~EwIeyH~~lGvd--~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~ 367 (571)
..|+|++.++|++++|.++|+.-..+-.. +++|+||+|+|+|.++++.+.+..-.|.++. ....+...+.|.++..+
T Consensus 5 p~vsViIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~-~~n~G~~~a~N~g~~~a 83 (240)
T 3bcv_A 5 PKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIH-KKNAGLGMACNSGLDVA 83 (240)
T ss_dssp CSEEEEEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEE-CCCCCHHHHHHHHHHHC
T ss_pred CcEEEEEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEE-CCCCChHHHHHHHHHHc
Confidence 46888888999999999999986655432 8999999999999999999864322255554 33445566777776554
Q ss_pred cCCCcEEEEecCCceeecC
Q 008286 368 KHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 368 ~~~~dWVlfiDaDEfL~p~ 386 (571)
..+||+|+|.|.++.+.
T Consensus 84 --~g~~i~~lD~Dd~~~~~ 100 (240)
T 3bcv_A 84 --TGEYVAFCDSDDYVDSD 100 (240)
T ss_dssp --CSSEEEECCTTCCCCTT
T ss_pred --CCCEEEEECCCCcCCHH
Confidence 67999999999988763
No 3
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=98.25 E-value=8.4e-06 Score=83.74 Aligned_cols=116 Identities=14% Similarity=0.086 Sum_probs=80.6
Q ss_pred CCceEEEEEEecchHHHHHHHHHHhhhc--C-ccEEEEEEcCCChhHHHHHHhhcCCCcEEEE---E-ecCCchhHHHHH
Q 008286 288 PKSEICVCTMVYNVAKFVKEWVIYHTKI--G-VEKFILYDNGSEDDLQNVVNELNGDGYNVTT---L-LWIWPKTQEAGF 360 (571)
Q Consensus 288 ~k~~IcVctivkNEa~~L~EwIeyH~~l--G-vd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~---i-~Wp~~~~Q~aa~ 360 (571)
.+..|+|++.++|++++|.++|+.-..+ . ..+|+|.|++|+|+|.++++.+...- +.. + ..+...+...+.
T Consensus 46 ~~~~vSViIp~yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~~~~~~--~~~~~~~~~~~~n~G~~~a~ 123 (329)
T 3ckj_A 46 AGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARV--VSREQALPEVPIRPGKGEAL 123 (329)
T ss_dssp TTCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEE--EEHHHHCTTSCCCCSHHHHH
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHHhhhhh--ccceeeeccCCCCCCHHHHH
Confidence 4467999999999999999999987665 2 36899999999999999999985421 111 1 123445566677
Q ss_pred HHHHHHhcCCCcEEEEecCCce-eecCCCCCCCCcHHHHHHhhhccCCccEEEEE
Q 008286 361 SHNAIHAKHSCKWMLYIDVDEF-VYSPSWHDSGPSKHLLKALIPQLHSIGQVSIR 414 (571)
Q Consensus 361 ndcl~r~~~~~dWVlfiDaDEf-L~p~~~~~~~~~~~~L~dlL~~~p~i~~i~~~ 414 (571)
|.++..+ ..+||+|+|+|.. +.+. .-..+.+.+.+.++++.+.-.
T Consensus 124 n~g~~~a--~gd~i~~lD~D~~~~~p~-------~l~~l~~~l~~~~~~~~v~g~ 169 (329)
T 3ckj_A 124 WRSLAAS--RGDIVVFVDSDLINPHPM-------FVPWLVGPLLTGDGVHLVKSF 169 (329)
T ss_dssp HHHHHHC--CCSEEEECCTTEESCCTT-------HHHHHHHHHHSCSSCCEEEEE
T ss_pred HHHHHhC--CCCEEEEECCCCCCcChH-------HHHHHHHHHHhCCCccEEEEE
Confidence 7777544 6799999999999 6653 223333433334566655433
No 4
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=98.25 E-value=7.6e-06 Score=90.76 Aligned_cols=122 Identities=15% Similarity=0.124 Sum_probs=85.2
Q ss_pred CCceEEEEEEecchHHHHHHHHHHhhhcCc--cEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHH
Q 008286 288 PKSEICVCTMVYNVAKFVKEWVIYHTKIGV--EKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAI 365 (571)
Q Consensus 288 ~k~~IcVctivkNEa~~L~EwIeyH~~lGv--d~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~ 365 (571)
....|+|++.++|++++|.++|+.-..+-. -+++|+|++|+|+|.++++.+.+..-.|.++. ....+...+.|.++.
T Consensus 373 ~~~~vsiii~~yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~~i~~~~-~~n~G~~~a~n~g~~ 451 (625)
T 2z86_A 373 RVPLVSIYIPAYNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVRFIS-QKNKGIGSASNTAVR 451 (625)
T ss_dssp SSCSEEEEEEESSCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEEEEE-ECCCCHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHhhCCcEEEEe-CCCCCHHHHHHHHHH
Confidence 345799999999999999999998655433 28999999999999999999855322255544 233455567787776
Q ss_pred HhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEEEEeeeec
Q 008286 366 HAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVSIRCLDFG 419 (571)
Q Consensus 366 r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~~~w~~Fg 419 (571)
.+ ..+||+++|.|.++.+. .-..+.+.+.+.++++.+......+.
T Consensus 452 ~a--~g~~i~~ld~D~~~~~~-------~l~~~~~~~~~~~~~~~v~~~~~~~~ 496 (625)
T 2z86_A 452 LC--RGFYIGQLDSDDFLEPD-------AVELCLDEFRKDLSLACVYTTNRNID 496 (625)
T ss_dssp HC--CSSEEEECCTTCEECTT-------HHHHHHHHHHHCTTCSEEEEEEEEEC
T ss_pred hc--CCCEEEEECCCcccChh-------HHHHHHHHHHhCCCeeEEEeeeEEEC
Confidence 54 67999999999998663 22333344444566776655444443
No 5
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=98.07 E-value=3.3e-05 Score=82.78 Aligned_cols=113 Identities=15% Similarity=0.011 Sum_probs=80.6
Q ss_pred CCceEEEEEEecchH-HHHHHHHHHhhhcCc----cEEEEEEcCCChh-HHHHHHhhcCC-CcEEEEEecCCchhHHHHH
Q 008286 288 PKSEICVCTMVYNVA-KFVKEWVIYHTKIGV----EKFILYDNGSEDD-LQNVVNELNGD-GYNVTTLLWIWPKTQEAGF 360 (571)
Q Consensus 288 ~k~~IcVctivkNEa-~~L~EwIeyH~~lGv----d~f~IYDn~StD~-t~eIL~~y~~~-G~~Vt~i~Wp~~~~Q~aa~ 360 (571)
....++|++.++||+ ..|.++|+.-..+-. .+|+|+||+|+|+ +.++|+.|.+. +..|.++.-+...+...+.
T Consensus 27 ~~p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a~ 106 (472)
T 1xhb_A 27 NLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRAR 106 (472)
T ss_dssp CCCCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHH
T ss_pred CCCCeEEEEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCCChHHHH
Confidence 445799999999999 999999988655432 2899999999984 99999988543 2136666655555566677
Q ss_pred HHHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCcc
Q 008286 361 SHNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIG 409 (571)
Q Consensus 361 ndcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~ 409 (571)
|..+..+ ..+||+|+|.|-.+.+. ....+.+.+++.+.+.
T Consensus 107 N~g~~~A--~gd~i~flD~D~~~~p~-------~L~~ll~~~~~~~~~~ 146 (472)
T 1xhb_A 107 LKGAAVS--RGQVITFLDAHCECTAG-------WLEPLLARIKHDRRTV 146 (472)
T ss_dssp HHHHHHC--CSSEEEEEESSEEECTT-------CHHHHHHHHHHCTTEE
T ss_pred HHHHHhc--cCCeEEEECCCeEeCcc-------HHHHHHHHHHhCCCEE
Confidence 7776544 57999999999886653 2344545555445443
No 6
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=98.02 E-value=3.3e-06 Score=89.64 Aligned_cols=92 Identities=16% Similarity=0.104 Sum_probs=68.9
Q ss_pred CceEEEEEEecchHHHHHHHHHHhhhc-----CccEEEEEEcCCChhHHHHHHhhcCCCcEEEEE-----ecCCchhHHH
Q 008286 289 KSEICVCTMVYNVAKFVKEWVIYHTKI-----GVEKFILYDNGSEDDLQNVVNELNGDGYNVTTL-----LWIWPKTQEA 358 (571)
Q Consensus 289 k~~IcVctivkNEa~~L~EwIeyH~~l-----Gvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i-----~Wp~~~~Q~a 358 (571)
...++|++.++||++.|.++|+.-..+ ...+|+|+||+|+|+|.++++.+... +... ..+...+...
T Consensus 93 ~p~vSVVIP~yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgStD~T~~i~~~~~~~---v~~~~~~~i~~~~n~G~g~ 169 (387)
T 3f1y_A 93 GLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHGAE---VYSENELMSGYGDAHGKGD 169 (387)
T ss_dssp TCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSSSHHHHHHHTTCE---EEEGGGTTGGGCSCCSHHH
T ss_pred CCeEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCCccHHHHHHHhCch---hcccceeEecCCccCCHHH
Confidence 467899999999999999998876442 35699999999999999999998642 2211 1223445556
Q ss_pred HHHHHHHHhcCCCcEEEEecCCce-eec
Q 008286 359 GFSHNAIHAKHSCKWMLYIDVDEF-VYS 385 (571)
Q Consensus 359 a~ndcl~r~~~~~dWVlfiDaDEf-L~p 385 (571)
++|.++.. ...+||+++|+|.. +.|
T Consensus 170 A~n~G~~~--A~gd~i~~lDaD~~~~~p 195 (387)
T 3f1y_A 170 AMWRALSV--TRGDLVLYIDADTRDFRP 195 (387)
T ss_dssp HHHHHTTT--CCSSEEEECCTTCSSCCT
T ss_pred HHHHHHHh--cCCCEEEEEcCCCCcCCH
Confidence 67766643 36799999999999 565
No 7
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=97.98 E-value=4.3e-05 Score=86.32 Aligned_cols=114 Identities=16% Similarity=0.085 Sum_probs=80.6
Q ss_pred CCceEEEEEEecchHHHHHHHHHHhhhc-----CccEEEEEEcCCChh-----HHHHHHhhcCCCcEEEEEecCCchhHH
Q 008286 288 PKSEICVCTMVYNVAKFVKEWVIYHTKI-----GVEKFILYDNGSEDD-----LQNVVNELNGDGYNVTTLLWIWPKTQE 357 (571)
Q Consensus 288 ~k~~IcVctivkNEa~~L~EwIeyH~~l-----Gvd~f~IYDn~StD~-----t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~ 357 (571)
....|+|++.++|++++|.++|+.-..+ ...+|+|+||+|+|+ +.++++.+.. .|+++.-+ +.+-.
T Consensus 178 ~~pkVSVVIptYN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~---~I~vI~~~-N~G~a 253 (657)
T 4fix_A 178 GTANIAVGIPTFNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGS---RLSIHDQP-NLGGS 253 (657)
T ss_dssp SCCCEEEECCBSSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGG---GEEEEECC-CCHHH
T ss_pred CCCeEEEEEEecCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCC---CEEEEECC-CCCHH
Confidence 4567999999999999999999985443 345899999999873 4555555433 36666555 55566
Q ss_pred HHHHHHHHHhcC--CCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEE
Q 008286 358 AGFSHNAIHAKH--SCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVS 412 (571)
Q Consensus 358 aa~ndcl~r~~~--~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~ 412 (571)
.++|..+..+.. .++||+|+|.|-.+.+. .-..+.+.++..++++.+.
T Consensus 254 ~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd-------~L~~ll~~l~~~~~~~~vg 303 (657)
T 4fix_A 254 GGYSRVMYEALKNTDCQQILFMDDDIRLEPD-------SILRVLAMHRFAKAPMLVG 303 (657)
T ss_dssp HHHHHHHHHHHHHCCCSEEEEECSSEEECTH-------HHHHHHHHHHHBSSCCEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCccChh-------HHHHHHHHHHhCCCcEEEE
Confidence 778888776654 68999999999998863 2334444455555555544
No 8
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=97.90 E-value=6.4e-05 Score=83.22 Aligned_cols=110 Identities=13% Similarity=-0.021 Sum_probs=80.1
Q ss_pred CceEEEEEEecchH-HHHHHHHHHhhhcCc-c---EEEEEEcCCChhH-HHHHHhhcCCCcEEEEEecCCchhHHHHHHH
Q 008286 289 KSEICVCTMVYNVA-KFVKEWVIYHTKIGV-E---KFILYDNGSEDDL-QNVVNELNGDGYNVTTLLWIWPKTQEAGFSH 362 (571)
Q Consensus 289 k~~IcVctivkNEa-~~L~EwIeyH~~lGv-d---~f~IYDn~StD~t-~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~nd 362 (571)
...++|++.++||+ ..|.++|+.-..+-. + +|+|+||+|+|++ .++|+.|.+..-.|.++.-+...+-..+.|.
T Consensus 111 ~P~vSVIIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~~~~n~G~~~A~N~ 190 (570)
T 2d7i_A 111 LPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILRTKKREGLIRTRML 190 (570)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEEECSSCCCHHHHHHH
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEEECCCCCCHHHHHHH
Confidence 35789999999998 999999988655432 2 8999999999999 9999998654323666665555555666777
Q ss_pred HHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCC
Q 008286 363 NAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHS 407 (571)
Q Consensus 363 cl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~ 407 (571)
.+..+ ..+||+|+|+|-.+.+. + + ..+.+.+.+.+.
T Consensus 191 G~~~A--~gd~i~fLD~D~~~~p~-~-----L-~~ll~~l~~~~~ 226 (570)
T 2d7i_A 191 GASVA--TGDVITFLDSHCEANVN-W-----L-PPLLDRIARNRK 226 (570)
T ss_dssp HHHHC--CSSEEEECCSSEEECTT-C-----S-HHHHHHHHHCTT
T ss_pred HHHhc--CCCEEEEEcCCcccccc-H-----H-HHHHHHHHhCCC
Confidence 76654 67999999999999653 3 3 344454554443
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=97.88 E-value=0.0001 Score=81.75 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=79.3
Q ss_pred ceEEEEEEecchHHHHHHHHHHhhhcC---ccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCch-hHHHHHHHHHH
Q 008286 290 SEICVCTMVYNVAKFVKEWVIYHTKIG---VEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPK-TQEAGFSHNAI 365 (571)
Q Consensus 290 ~~IcVctivkNEa~~L~EwIeyH~~lG---vd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~-~Q~aa~ndcl~ 365 (571)
..|+|++.++|++..|.++|+.-..+- --+++|+||+|+|++.++++.+.+..- +.++.-+..+ +...+.|.++.
T Consensus 93 p~vsviIp~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~-i~~i~~~~~~~g~~~a~N~g~~ 171 (625)
T 2z86_A 93 DGLSIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLN-IKYVRQKDYGYQLCAVRNLGLR 171 (625)
T ss_dssp CCEEEEEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSC-EEEEEECCCSCCHHHHHHHHHH
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCC-eEEEEeCCCCcchhHHHHHHHH
Confidence 578999999999999999999866552 358999999999999999999965432 4444434332 24455676665
Q ss_pred HhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEE
Q 008286 366 HAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQV 411 (571)
Q Consensus 366 r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i 411 (571)
.+ ..+||+++|.|..+.+. .-..+.+.+.+.+..+.+
T Consensus 172 ~a--~g~~v~~lD~D~~~~~~-------~l~~~~~~~~~~~~~~~~ 208 (625)
T 2z86_A 172 AA--KYNYVAILDCDMAPNPL-------WVQSYMELLAVDDNVALI 208 (625)
T ss_dssp HC--CSSEEEEECTTEEECTT-------HHHHHHHHHHHCTTEEEE
T ss_pred hC--CcCEEEEECCCCCCCHH-------HHHHHHHHHhcCCceEEE
Confidence 44 77999999999999653 233444445444544443
No 10
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=97.65 E-value=0.00047 Score=74.60 Aligned_cols=93 Identities=17% Similarity=0.072 Sum_probs=68.6
Q ss_pred CCceEEEEEEecchHH-HHHHHHHHhhhcCc-c---EEEEEEcCCChhHHHH-HHhhcCCCcEEEEEecCCchhHHHHHH
Q 008286 288 PKSEICVCTMVYNVAK-FVKEWVIYHTKIGV-E---KFILYDNGSEDDLQNV-VNELNGDGYNVTTLLWIWPKTQEAGFS 361 (571)
Q Consensus 288 ~k~~IcVctivkNEa~-~L~EwIeyH~~lGv-d---~f~IYDn~StD~t~eI-L~~y~~~G~~Vt~i~Wp~~~~Q~aa~n 361 (571)
....++|++.++||+. .|.++|+.-..+-. + +|+|+|++|+|++.+. ++.+. .|.++.-+...+...+.|
T Consensus 64 ~~p~vSVIIp~yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~~----~v~vi~~~~n~G~~~A~N 139 (501)
T 2ffu_A 64 DLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIE----KVRVLRNDRREGLMRSRV 139 (501)
T ss_dssp SCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBT----TEEEEECSSCCHHHHHHH
T ss_pred CCCCEEEEEEeCcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcCC----CEEEEECCCCcCHHHHHH
Confidence 3456999999999987 99999988655422 2 8999999999998543 32221 266666566666777778
Q ss_pred HHHHHhcCCCcEEEEecCCceeecC
Q 008286 362 HNAIHAKHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 362 dcl~r~~~~~dWVlfiDaDEfL~p~ 386 (571)
..+..+ ..+||+|+|+|-.+.+.
T Consensus 140 ~G~~~A--~gd~i~flD~D~~~~p~ 162 (501)
T 2ffu_A 140 RGADAA--QAKVLTFLDSHCECNEH 162 (501)
T ss_dssp HHHHHC--CSSEEEECCSSEEECTT
T ss_pred HHHHhc--CCCEEEEECCCcccCcc
Confidence 777654 67999999999988653
No 11
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=97.60 E-value=8.8e-06 Score=92.49 Aligned_cols=94 Identities=13% Similarity=0.217 Sum_probs=0.0
Q ss_pred eEEEEEEecchHHHHHHHHHHhhhcCcc--EEEEEEcCCChhHHHHHHhhcCC-CcEEEEEecCCchhHHHHHHHHHHHh
Q 008286 291 EICVCTMVYNVAKFVKEWVIYHTKIGVE--KFILYDNGSEDDLQNVVNELNGD-GYNVTTLLWIWPKTQEAGFSHNAIHA 367 (571)
Q Consensus 291 ~IcVctivkNEa~~L~EwIeyH~~lGvd--~f~IYDn~StD~t~eIL~~y~~~-G~~Vt~i~Wp~~~~Q~aa~ndcl~r~ 367 (571)
.|+|++.++|++++|.++|+.-..+-.. +|+|+|++|+|+|.++++.+.+. +..|.++.-+...+...+.|.++..+
T Consensus 3 ~vSVIIp~yN~~~~L~~~L~Sll~Qt~~~~EIIVVDDgStD~t~~il~~~~~~~~~~i~~i~~~~n~G~~~arN~gi~~A 82 (729)
T 3l7i_A 3 KLTIIVTYYNAEEYITGCLESIKQQRTQDFNLIIVNDGSTDQSKKLMDEAIKDYDKNIRFIDLDENSGHAHARNIALEEV 82 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEEcCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCcHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5788888999999999999986555332 79999999999999999999754 22355444333344455667666544
Q ss_pred cCCCcEEEEecCCceeecC
Q 008286 368 KHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 368 ~~~~dWVlfiDaDEfL~p~ 386 (571)
..+||+|+|.|..+.|.
T Consensus 83 --~gdyI~flD~Dd~~~p~ 99 (729)
T 3l7i_A 83 --ETPYFMFLDADDELASY 99 (729)
T ss_dssp -------------------
T ss_pred --cCCEEEEECCCCCCChh
Confidence 67999999999999763
No 12
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=97.04 E-value=0.0022 Score=73.85 Aligned_cols=116 Identities=10% Similarity=0.003 Sum_probs=74.5
Q ss_pred CceEEEEEEecchHHHH-HHHHHHhhhcCcc----EEEEEEcCCChhHH---------------HHHHhhcC-CCcEEEE
Q 008286 289 KSEICVCTMVYNVAKFV-KEWVIYHTKIGVE----KFILYDNGSEDDLQ---------------NVVNELNG-DGYNVTT 347 (571)
Q Consensus 289 k~~IcVctivkNEa~~L-~EwIeyH~~lGvd----~f~IYDn~StD~t~---------------eIL~~y~~-~G~~Vt~ 347 (571)
...++|++.++||+..+ .++|+.-..+-.. +|+|.|++|+|++. +.++.+.+ .|. .+
T Consensus 139 ~P~VSViIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v--~~ 216 (802)
T 4hg6_A 139 LPTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGV--VY 216 (802)
T ss_dssp CCCEEEEEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTC--EE
T ss_pred CCcEEEEEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCc--EE
Confidence 34788888899998765 8899986555432 69999999999983 33444422 233 22
Q ss_pred EecCC-chhHHHHHHHHHHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhccCCccEEEEEe
Q 008286 348 LLWIW-PKTQEAGFSHNAIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQLHSIGQVSIRC 415 (571)
Q Consensus 348 i~Wp~-~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~~p~i~~i~~~w 415 (571)
+.-+. ..+...+.|.++..+ +.|||+++|+|-.+.+. .-..+.+.+.+.|+++.+..+.
T Consensus 217 i~~~~~~~GKa~alN~gl~~a--~gd~Il~lDaD~~~~pd-------~L~~lv~~~~~dp~v~~V~~~~ 276 (802)
T 4hg6_A 217 STRERNEHAKAGNMSAALERL--KGELVVVFDADHVPSRD-------FLARTVGYFVEDPDLFLVQTPH 276 (802)
T ss_dssp EECSSCCSHHHHHHHHHHHHC--CCSEEEECCTTEEECTT-------HHHHHHHHHHHSSSCCEEECCC
T ss_pred EEecCCCCcchHHHHHHHHhc--CCCEEEEECCCCCcChH-------HHHHHHHHHhcCCCeEEEeccE
Confidence 22222 234445677776544 77999999999988653 2233334444456777776543
No 13
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=96.60 E-value=0.0077 Score=63.17 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=72.0
Q ss_pred CceEEEEEEecchHHHHHHHHHHhhhcCccEEEEEEcCCChhH---HHHHHhhcC-CCcEEEEEecCCchhHHHHHHH--
Q 008286 289 KSEICVCTMVYNVAKFVKEWVIYHTKIGVEKFILYDNGSEDDL---QNVVNELNG-DGYNVTTLLWIWPKTQEAGFSH-- 362 (571)
Q Consensus 289 k~~IcVctivkNEa~~L~EwIeyH~~lGvd~f~IYDn~StD~t---~eIL~~y~~-~G~~Vt~i~Wp~~~~Q~aa~nd-- 362 (571)
...++|++-++||...+.+-|.-.....+ .|+|+||+|+|.+ .++++.|.+ ..-.+.++. ..+.+-..+++.
T Consensus 52 ~~klSIVVPvYNEe~~lLesVl~qi~~d~-eIIlVdDGS~D~s~~e~dil~~~~~~~~~ri~viH-Qkn~gls~Ar~~~G 129 (391)
T 2wvl_A 52 LEQTAIVVPTRNERLKLLEGVLSGIPHEA-LILVASNSSPDRFQMERDLLEEFAHLTERPALIFH-QKDPALAEALRAGG 129 (391)
T ss_dssp HTTEEEEEEESSCCHHHHHHHHHTSCTTS-EEEEEECCCHHHHHHHHHHHHHHHHHTTCCEEEEE-TTCHHHHHHHHHTT
T ss_pred HhceEEEEeccCcHHHHHHHHHhcCCCCc-eEEEEECCCCCChHhHHHHHHHHHhhcccceEEEe-ccChHHHHHHHhcC
Confidence 35678888899999887665543211122 7999999999999 678889964 121244433 122222222321
Q ss_pred ---------------------HHHHh-cCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhc----cCCccEEEEEee
Q 008286 363 ---------------------NAIHA-KHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQ----LHSIGQVSIRCL 416 (571)
Q Consensus 363 ---------------------cl~r~-~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~----~p~i~~i~~~w~ 416 (571)
-+..+ ....+||.|+|+|-++... ..+.+..+-+. ....+.+++.|+
T Consensus 130 ~~~il~~~~~vR~GKGegmi~Gi~~Ak~~~geYVgFvDADdyi~~~-------v~Eyvk~yaag~~~a~s~~~MVRI~wR 202 (391)
T 2wvl_A 130 YPHPIGEDGLVRSGKAEGMILALVFAALSGRRYVGFIDADNYFPGA-------VWEYVRAYAAGFLMAKTPFAMVRILWR 202 (391)
T ss_dssp CCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCBSCHHH-------HHHHHHHHHHHHHHCCSSEEEEEEECC
T ss_pred cchhhcccccccccchHHHHHHHHHHHhcCCCEEEEEcCcCCCccC-------HHHHHHHHHHHhcccCCCcceEEEecc
Confidence 11111 1378999999999999542 12333333222 135778889998
Q ss_pred ee
Q 008286 417 DF 418 (571)
Q Consensus 417 ~F 418 (571)
.-
T Consensus 203 ~k 204 (391)
T 2wvl_A 203 YK 204 (391)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 14
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=96.53 E-value=0.005 Score=65.53 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=42.6
Q ss_pred cEEEEEEcCCChhHHHHHHh----hc-CCCcEEEEEecC--C--chhHHHHHHHHHHHh--cCCCcEEEEecCCce
Q 008286 318 EKFILYDNGSEDDLQNVVNE----LN-GDGYNVTTLLWI--W--PKTQEAGFSHNAIHA--KHSCKWMLYIDVDEF 382 (571)
Q Consensus 318 d~f~IYDn~StD~t~eIL~~----y~-~~G~~Vt~i~Wp--~--~~~Q~aa~ndcl~r~--~~~~dWVlfiDaDEf 382 (571)
-+|+|+|+||+|+|.++++. +. +.|..|....-. + ..++..+++..+..+ ..+.|||+++|+|=-
T Consensus 29 ~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq 104 (397)
T 2bo4_A 29 VHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADIT 104 (397)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCS
T ss_pred eEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence 37999999999999999993 32 234333322212 2 345566666665221 357899999999954
No 15
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=96.05 E-value=0.014 Score=57.12 Aligned_cols=91 Identities=10% Similarity=-0.024 Sum_probs=58.5
Q ss_pred CCceEEEEEEecchHHHHHHHHHHhh----hcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHH
Q 008286 288 PKSEICVCTMVYNVAKFVKEWVIYHT----KIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHN 363 (571)
Q Consensus 288 ~k~~IcVctivkNEa~~L~EwIeyH~----~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndc 363 (571)
..+.++|++ ++|+.+.|.++|+... .+..-+++|+||+|+|. .|+ ..+.|..
T Consensus 14 ~~~~iSII~-~yN~~~~l~~~l~sl~~sl~~q~~~EiIVVDn~s~d~----------~g~-------------a~a~N~G 69 (249)
T 2nxv_A 14 STLMFSVCS-LVRDQAKYDRLLESFERFGFTPDKAEFLAADNREGNQ----------FHG-------------FSWHKQM 69 (249)
T ss_dssp CCCSEEEEE-EESCHHHHHHHHHHHHHTTCCTTTEEEEEEECTTSCS----------CCT-------------TTHHHHH
T ss_pred CcceEEEEE-eeCCHHHHHHHHHHHHHhccCCCcEEEEEEECCCCCc----------ccH-------------HHHHHHH
Confidence 345677764 5899999999999432 12225799999999872 121 1233444
Q ss_pred HHHhcCCCcEEEEecCCceeecCCCCCCCCcHHHHHHhhhc----cCCccEE
Q 008286 364 AIHAKHSCKWMLYIDVDEFVYSPSWHDSGPSKHLLKALIPQ----LHSIGQV 411 (571)
Q Consensus 364 l~r~~~~~dWVlfiDaDEfL~p~~~~~~~~~~~~L~dlL~~----~p~i~~i 411 (571)
+. ....+|++|+|.|-++ ++++ -..|.+.+++ .|+++.+
T Consensus 70 i~--~A~g~yl~fln~D~~~-~~~~------l~~l~~~~~~~~~~~~~vg~v 112 (249)
T 2nxv_A 70 LP--RCKGRYVIFCHEDVEL-VDRG------YDDLVAAIEALEEADPKWLVA 112 (249)
T ss_dssp GG--GCCSSEEEEEETTEEC-SSCC------HHHHHHHHHHHHHHCTTEEEE
T ss_pred HH--hcCCCEEEEECCCccc-CccH------HHHHHHHHHhcccCCCCeeEE
Confidence 43 3367999999999998 4433 3455555554 2666554
No 16
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=94.43 E-value=0.083 Score=56.09 Aligned_cols=87 Identities=9% Similarity=0.111 Sum_probs=54.5
Q ss_pred ceEEEEEEecchHHHHH-HHHHHhhhcCccEEEEEEcCCChhH------HHHHHhhcC---CCcEEEEEecCCc------
Q 008286 290 SEICVCTMVYNVAKFVK-EWVIYHTKIGVEKFILYDNGSEDDL------QNVVNELNG---DGYNVTTLLWIWP------ 353 (571)
Q Consensus 290 ~~IcVctivkNEa~~L~-EwIeyH~~lGvd~f~IYDn~StD~t------~eIL~~y~~---~G~~Vt~i~Wp~~------ 353 (571)
..++|++-++||+..+. +-+.- .-...+|+|.|++|+|++ .++++.+.+ .+. .+-|...
T Consensus 51 ~~iSVVIP~yNEE~~lI~~vL~~--i~~~~eIIvVDDgSrD~tD~~~~~~~~l~~~~~~~~~~~---~Vl~~~~p~v~~~ 125 (394)
T 2zu9_A 51 GKMAVIVPMKNEKLHLVDGVLKA--IPHKCPIIIVSNSKREGPNRYKLEVDLIRHFYNLTHSKI---IMIHQKDPGLAKA 125 (394)
T ss_dssp TTEEEEEEESSCCHHHHHHHHHH--SCTTSCEEEEECCCCSSSCHHHHHHHHHHHHHHHHCCCE---EEEETTCHHHHHH
T ss_pred CCEEEEEecCcccHHHHHHHHHc--CCCCcEEEEEECcCcccccchhhHHHHHHHHhhccccce---EEEecCCcchhHH
Confidence 36888888999986653 33331 112357999999996666 677776522 333 2233322
Q ss_pred -----------------hhHHHHHHHHHHHh-cCCCcEEEEecCCc
Q 008286 354 -----------------KTQEAGFSHNAIHA-KHSCKWMLYIDVDE 381 (571)
Q Consensus 354 -----------------~~Q~aa~ndcl~r~-~~~~dWVlfiDaDE 381 (571)
.++..+.--++..+ ....+||+++|+|=
T Consensus 126 ~~~~g~~~il~~~~~~r~GKG~Am~aGl~~A~~~~gd~Vv~~DaDl 171 (394)
T 2zu9_A 126 FKEVGYTDILDENGMIRSGKGEGMLVGLLLAKAIGAEYVGFVDADN 171 (394)
T ss_dssp HHHHTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCB
T ss_pred hhhccccccccccccccCChHHHHHHHHHHHhhCCCCEEEEEeCCC
Confidence 24444455555544 33789999999999
No 17
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=92.52 E-value=0.35 Score=48.81 Aligned_cols=76 Identities=11% Similarity=0.205 Sum_probs=50.7
Q ss_pred CCceEEEEEEecchHHHHHHHHHHhh----hcCcc-EEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHH
Q 008286 288 PKSEICVCTMVYNVAKFVKEWVIYHT----KIGVE-KFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSH 362 (571)
Q Consensus 288 ~k~~IcVctivkNEa~~L~EwIeyH~----~lGvd-~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~nd 362 (571)
....|+|++.++|+++.|.++|++.. ....+ +|+|.|+. +|+ ++ . ...+.|.
T Consensus 63 ~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds-~d~-----------~f---------~--~a~a~N~ 119 (287)
T 2fy7_A 63 SPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQA-GDT-----------IF---------N--RAKLLNV 119 (287)
T ss_dssp CSCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEC-SSS-----------CC---------C--HHHHHHH
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEeC-CCC-----------cc---------c--hhhhhhh
Confidence 45689999999999999999999865 22332 67888873 331 11 0 1122333
Q ss_pred HHHH--hcCCCcEEEEecCCceeecC
Q 008286 363 NAIH--AKHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 363 cl~r--~~~~~dWVlfiDaDEfL~p~ 386 (571)
.+.. .....+|++|+|+|-.+.+.
T Consensus 120 G~~~al~~A~gd~i~flD~D~i~~~d 145 (287)
T 2fy7_A 120 GFQEALKDYDYTCFVFSDVDLIPMND 145 (287)
T ss_dssp HHHHHHHHSCCCEEEEECTTEEESBT
T ss_pred HHHHHHHhCCCCEEEEECCCcccCCC
Confidence 3311 23578999999999988875
No 18
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=80.55 E-value=5.2 Score=34.99 Aligned_cols=52 Identities=25% Similarity=0.524 Sum_probs=43.1
Q ss_pred EecchHHHHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEE
Q 008286 297 MVYNVAKFVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTL 348 (571)
Q Consensus 297 ivkNEa~~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i 348 (571)
.+-+.-.||..||+--+.-|++-|++|.|..+|.-.+.-+.+...|..|..+
T Consensus 84 vttddkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgvdvrtv 135 (162)
T 2l82_A 84 VTTDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTV 135 (162)
T ss_dssp EECCCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSCEEEEE
T ss_pred EecCcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCceeeec
Confidence 3457778999999998889999999999988888888888898888765443
No 19
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=77.46 E-value=8.5 Score=39.81 Aligned_cols=92 Identities=11% Similarity=0.025 Sum_probs=59.1
Q ss_pred eEEEEEEecchHHHHHHHHHHhhhc--Cc--cEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCc----------hhH
Q 008286 291 EICVCTMVYNVAKFVKEWVIYHTKI--GV--EKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWP----------KTQ 356 (571)
Q Consensus 291 ~IcVctivkNEa~~L~EwIeyH~~l--Gv--d~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~----------~~Q 356 (571)
.+.|+++++|-.+ |..+|+.-+.+ +. ..++|.|+++.+++.++++.|... |+.+..+.. +.+
T Consensus 3 ~~pViI~~yNRp~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~~~~~~---I~~~~~~d~~~~~~~~~N~g~~ 78 (343)
T 1fo8_A 3 VIPILVIACDRST-VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSA---VTHIRQPDLSNIAVQPDHRKFQ 78 (343)
T ss_dssp CCCEEEEESSCTT-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGG---SEEEECSCCCCCCCCTTCGGGH
T ss_pred cccEEEEECCcHH-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHHHcCCc---eEEEEcCCccccccchhhcCcc
Confidence 3567777889877 87787775554 23 379999999999999999998542 332211111 110
Q ss_pred ----H-HHHHHHHHHh--cCCCcEEEEecCCceeecC
Q 008286 357 ----E-AGFSHNAIHA--KHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 357 ----~-aa~ndcl~r~--~~~~dWVlfiDaDEfL~p~ 386 (571)
. ..+..++-.. ....++++++|-|=.+.|.
T Consensus 79 ~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spd 115 (343)
T 1fo8_A 79 GYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPD 115 (343)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTT
T ss_pred cchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHH
Confidence 0 1222333322 2378999999999888874
No 20
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=50.79 E-value=93 Score=30.25 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=39.0
Q ss_pred HHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhc-CCCcEEEEecCCceeec
Q 008286 309 VIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAK-HSCKWMLYIDVDEFVYS 385 (571)
Q Consensus 309 IeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~-~~~dWVlfiDaDEfL~p 385 (571)
++--...|+++|+|..+ ++...+.++.+ |..+....-....+.. ....++.... ...++++++++|+-+..
T Consensus 41 l~~l~~~~i~~VvVvt~--~~~i~~~~~~~---g~~v~~~~~~~~~Gt~-~i~~a~~~l~~~~~d~vlv~~gD~Pli~ 112 (256)
T 3tqd_A 41 YESAIKSGAEEVVIATD--DKRIRQVAEDF---GAVVCMTSSDHQSGTE-RIAEAAVALGFEDDEIIVCLQGDEPLIP 112 (256)
T ss_dssp HHHHHHTTCSEEEEEES--CHHHHHHHHHT---TCEEEECCTTCCSHHH-HHHHHHHHTTCCTTCEEEEECTTCCCCC
T ss_pred HHHHHhCCCCEEEEECC--HHHHHHHHHHc---CCeEEEeCCCCCCcHH-HHHHHHHHhCcCCCCEEEEEeCCcccCC
Confidence 33333468999998864 46666666654 5444432111222222 1233332221 35799999999996654
No 21
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=48.75 E-value=1e+02 Score=30.06 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=43.9
Q ss_pred HHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHh-cCCCcEEEEecCCceeecCC
Q 008286 309 VIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHA-KHSCKWMLYIDVDEFVYSPS 387 (571)
Q Consensus 309 IeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~-~~~~dWVlfiDaDEfL~p~~ 387 (571)
|+--...|+++|+|..+ ++...++++.+ |..+....-....+.. ....++... ....++++++++|+-+..+
T Consensus 50 l~~l~~~~i~~IvV~t~--~~~i~~~~~~~---g~~v~~~~~~~~~Gt~-~i~~~~~~l~~~~~d~vlv~~gD~Pli~~- 122 (264)
T 3k8d_A 50 LERARESGAERIIVATD--HEDVARAVEAA---GGEVCMTRADHQSGTE-RLAEVVEKCAFSDDTVIVNVQGDEPMIPA- 122 (264)
T ss_dssp HHHHHHTTCSEEEEEES--CHHHHHHHHHT---TCEEEECCTTCCSHHH-HHHHHHHHHTCCTTCEEEEECTTCTTCCH-
T ss_pred HHHHHhCCCCEEEEECC--HHHHHHHHHHc---CCEEEEecCCCCCCHH-HHHHHHHHhccCCCCEEEEEcCCcccCCH-
Confidence 33333468999998763 46666666655 4434332111122211 122222211 1367999999999966543
Q ss_pred CCCCCCcHHHHHHhhhc
Q 008286 388 WHDSGPSKHLLKALIPQ 404 (571)
Q Consensus 388 ~~~~~~~~~~L~dlL~~ 404 (571)
..|..+++.
T Consensus 123 --------~~i~~li~~ 131 (264)
T 3k8d_A 123 --------TIIRQVADN 131 (264)
T ss_dssp --------HHHHHHHHH
T ss_pred --------HHHHHHHHH
Confidence 456666654
No 22
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=47.81 E-value=78 Score=31.97 Aligned_cols=76 Identities=12% Similarity=0.120 Sum_probs=47.3
Q ss_pred CCCceEEEEEEecchHHHHHHHHHHh----hhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHH
Q 008286 287 EPKSEICVCTMVYNVAKFVKEWVIYH----TKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSH 362 (571)
Q Consensus 287 ~~k~~IcVctivkNEa~~L~EwIeyH----~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~nd 362 (571)
...+.+||++-++|-.+.|..||.|. ..++++.-|++.+..++ .+.+++. .+|-
T Consensus 48 ~~~~kvAIIIPyRdR~~hL~~fl~~lhp~L~rQ~l~y~I~VieQ~~~--------------------~~FNRa~--LlNv 105 (287)
T 3lw6_A 48 ASVHKMALLVPFRDRFEELLQFVPHMTAFLKRQGVAHHIFVLNQVDR--------------------FRFNRAS--LINV 105 (287)
T ss_dssp CCCCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSS--------------------SCCCHHH--HHHH
T ss_pred CCcceEEEEEEeCCHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCC--------------------Cccchhh--eecc
Confidence 56789999999999988888888762 22455533322222211 1222222 2444
Q ss_pred HHHHhcCCCcEEEEecCCceee
Q 008286 363 NAIHAKHSCKWMLYIDVDEFVY 384 (571)
Q Consensus 363 cl~r~~~~~dWVlfiDaDEfL~ 384 (571)
-+..+....|+++|-|+|=...
T Consensus 106 Gf~ea~~~~d~~ifHDVDLlP~ 127 (287)
T 3lw6_A 106 GFQFASDVYDYIAMHDVDLLPL 127 (287)
T ss_dssp HHHHSCTTCCEEEEECTTEEEC
T ss_pred cHHHHhccCCEEEEeccccccc
Confidence 4555667789999999995443
No 23
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=46.39 E-value=1e+02 Score=29.39 Aligned_cols=85 Identities=11% Similarity=0.153 Sum_probs=45.0
Q ss_pred HHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhc-CCCcEEEEecCCcee
Q 008286 305 VKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAK-HSCKWMLYIDVDEFV 383 (571)
Q Consensus 305 L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~-~~~dWVlfiDaDEfL 383 (571)
|...|+.-+..|+++|+|..+ ++...+.++.+ |..+....-....+.. ....++.... ...++++++++|+-+
T Consensus 30 i~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~~~---g~~v~~~~~~~~~Gt~-~~~~~~~~l~~~~~d~vlv~~gD~Pl 103 (252)
T 3oam_A 30 IQWVYEQAMQAGADRVIIATD--DERVEQAVQAF---GGVVCMTSPNHQSGTE-RLAEVVAKMAIPADHIVVNVQGDEPL 103 (252)
T ss_dssp HHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHT---TCEEEECCTTCCSHHH-HHHHHHHHTTCCTTSEEEECCTTCTT
T ss_pred HHHHHHHHHhCCCCeEEEECC--HHHHHHHHHHc---CCEEEEcCCCCCCcHH-HHHHHHHhcCcCCCCEEEEEeCCeee
Confidence 333344434468999998874 46666666554 5544432211111211 1222332221 257999999999955
Q ss_pred ecCCCCCCCCcHHHHHHhhhc
Q 008286 384 YSPSWHDSGPSKHLLKALIPQ 404 (571)
Q Consensus 384 ~p~~~~~~~~~~~~L~dlL~~ 404 (571)
... ..|.++++.
T Consensus 104 i~~---------~~i~~l~~~ 115 (252)
T 3oam_A 104 IPP---------AIIRQVADN 115 (252)
T ss_dssp CCH---------HHHHHHHHH
T ss_pred cCH---------HHHHHHHHH
Confidence 432 356666554
No 24
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=44.43 E-value=34 Score=28.71 Aligned_cols=45 Identities=22% Similarity=0.522 Sum_probs=31.5
Q ss_pred CCceEEEEEEeecCCCCCCCCCCceEEEEeecccccceeeceeeEEcCCCCC
Q 008286 195 EDDVVLFVKGVNARSRSRSPQPQDFMCVFGDAVKTPVTSCTQEVFRCSHPEL 246 (571)
Q Consensus 195 ~~~~vv~v~gi~~r~~~~~~~~~~~~C~f~~~~~t~~~~~~q~vi~C~~P~~ 246 (571)
.+.+.|.|.|-++. ..+++.|.|+.. ..++......+++|..|+.
T Consensus 20 sGGTkv~I~G~~L~------~gs~~~~~fG~~-~vpa~~~s~~vl~C~tPp~ 64 (95)
T 2cxk_A 20 EGGVKVLITGPWQE------ASNNYSCLFDQI-SVPASLIQPGVLRCYCPAH 64 (95)
T ss_dssp TCCCEEEEESSCCC------CSSCEEEEETTE-EEECEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeECCC------CCccEEEEECCE-EEeEEEeECCEEEEEecCC
Confidence 45678999998873 334699999872 2233345557899999983
No 25
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=43.05 E-value=1.1e+02 Score=29.77 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=38.6
Q ss_pred HHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhc-CCCcEEEEecCCceeec
Q 008286 310 IYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAK-HSCKWMLYIDVDEFVYS 385 (571)
Q Consensus 310 eyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~-~~~dWVlfiDaDEfL~p 385 (571)
+--+..|+++++|..+ ++...++++.+ |..+....-....+. .++.+++.... ...+|++++++|+=+..
T Consensus 35 ~~~~~~~~~~vvVvt~--~~~i~~~~~~~---g~~v~~~~~~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD~Pli~ 105 (253)
T 4fcu_A 35 QAKKVEGFDDLCVATD--DERIAEICRAE---GVDVVLTSADHPSGT-DRLSEVARIKGWDADDIIVNVQGDEPLLP 105 (253)
T ss_dssp HHHTCTTCCEEEEEES--CHHHHHHHHTT---TCCEEECCTTCCCHH-HHHHHHHHHHTCCTTCEEEECCTTCTTCC
T ss_pred HHHHhcCCCEEEEECC--HHHHHHHHHHc---CCeEEEeCCCCCChH-HHHHHHHHhcCcCCCCEEEEEeCCcccCC
Confidence 3333358999998875 35565665544 543433211112222 23444443332 25799999999995543
No 26
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=37.83 E-value=66 Score=28.82 Aligned_cols=88 Identities=9% Similarity=0.095 Sum_probs=46.9
Q ss_pred HHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCCCcEEEEecCCcee
Q 008286 304 FVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHSCKWMLYIDVDEFV 383 (571)
Q Consensus 304 ~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEfL 383 (571)
.|...|+--...|+++++|..+...+...+. +.+.|+.+.... .+..+...++..++.......+|++++++|--+
T Consensus 33 li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~---~~~~~~~~~~~~-~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~ 108 (199)
T 2waw_A 33 LLGATLAMARRCPFDQLIVTLGGAADEVLEK---VELDGLDIVLVD-DAGLGCSSSLKSALTWVDPTAEGIVLMLGDQPG 108 (199)
T ss_dssp HHHHHHHHHHTSSCSEEEEEECTTHHHHHHH---SCCTTSEEEECC-CCCTTCCCHHHHHHHTSCTTCSEEEEEETTCTT
T ss_pred HHHHHHHHHHhCCCCcEEEEeCCCHHHHHHH---hccCCCEEEECC-CcccCHHHHHHHHHHhhhccCCeEEEEeCCccc
Confidence 3443444444567899999886544433333 333355443211 112222233444443222257999999999866
Q ss_pred ecCCCCCCCCcHHHHHHhhhc
Q 008286 384 YSPSWHDSGPSKHLLKALIPQ 404 (571)
Q Consensus 384 ~p~~~~~~~~~~~~L~dlL~~ 404 (571)
... ..|..+++.
T Consensus 109 ~~~---------~~i~~l~~~ 120 (199)
T 2waw_A 109 ITA---------SAVASLIAG 120 (199)
T ss_dssp CCH---------HHHHHHHHH
T ss_pred CCH---------HHHHHHHhh
Confidence 543 456666664
No 27
>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*
Probab=37.07 E-value=91 Score=30.78 Aligned_cols=89 Identities=8% Similarity=0.150 Sum_probs=49.5
Q ss_pred eEEEEEE-ecchHHHHHHHHHH---hhhcCcc---EEEEEEcCCChhHHHHHHhhcCCCcEEEEE-----ecCCchh-HH
Q 008286 291 EICVCTM-VYNVAKFVKEWVIY---HTKIGVE---KFILYDNGSEDDLQNVVNELNGDGYNVTTL-----LWIWPKT-QE 357 (571)
Q Consensus 291 ~IcVcti-vkNEa~~L~EwIey---H~~lGvd---~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i-----~Wp~~~~-Q~ 357 (571)
+|++..+ ++....+|..|++. |...|.. ++||+.++... .. ....+. |..+ .|+...- ..
T Consensus 2 tIGl~vfA~GkY~~fl~~Fl~SAek~Fm~g~~~~V~yYVFTD~~~~-vp-----~~~~~~-v~~~~~~~~~Wqd~sm~Rm 74 (246)
T 4ayl_A 2 RIGILYICTGKYDIFWKDFYLSAERYFMQDQSFIIEYYVFTDSPKL-YD-----EENNKH-IHRIKQKNLGWPDNTLKRF 74 (246)
T ss_dssp EEEEEEECCGGGGGGHHHHHHHHHHHBSCSTTSEEEEEEEESCSCC-TT-----TTTCTT-EEEEECCCCCTTHHHHTHH
T ss_pred eEEEEEEEeCcHHHHHHHHHHhHHHhccCCCccceEEEEEeCChhh-CC-----cCCCce-EEEEeCCcCCCcccchHHH
Confidence 4555544 56777788777665 6677876 44555554332 11 111222 3332 2443222 22
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCceeecC
Q 008286 358 AGFSHNAIHAKHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 358 aa~ndcl~r~~~~~dWVlfiDaDEfL~p~ 386 (571)
..+.+...+.+.+.|+++++|+|-.+.-.
T Consensus 75 ~~i~~~~~~~~~evDyLf~~dvd~~F~~~ 103 (246)
T 4ayl_A 75 HIFLRIKEQLERETDYLFFFNANLLFTSP 103 (246)
T ss_dssp HHHHTTHHHHHHHCSEEEEECTTEEECSC
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCceeecc
Confidence 33444444455679999999999777654
No 28
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=36.58 E-value=1.5e+02 Score=28.09 Aligned_cols=90 Identities=6% Similarity=0.023 Sum_probs=49.9
Q ss_pred HHHHHHHHhhhcC-ccEEEEEEcCCC-hhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhc-----CCCcEEEE
Q 008286 304 FVKEWVIYHTKIG-VEKFILYDNGSE-DDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAK-----HSCKWMLY 376 (571)
Q Consensus 304 ~L~EwIeyH~~lG-vd~f~IYDn~St-D~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~-----~~~dWVlf 376 (571)
.|..-|+--...| +++|+|..+... +...++++.|...+. +..+. +...+..+...++.... ...+||++
T Consensus 34 ll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~sv~~al~~l~~~~~~~~~~~vlv 110 (246)
T 3f1c_A 34 IIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDR-IVVIE--GGEDRNETIMNGIRFVEKTYGLTDDDIIVT 110 (246)
T ss_dssp HHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCCTT-EEEEE--CCSSHHHHHHHHHHHHHHHTCCCTTCEEEE
T ss_pred HHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCCCC-EEEEC--CCCchHHHHHHHHHHHhhhhcCCCCCEEEE
Confidence 3333344433456 899998887544 346677877753332 44332 22233333333332221 24799999
Q ss_pred ecCCceeecCCCCCCCCcHHHHHHhhhcc
Q 008286 377 IDVDEFVYSPSWHDSGPSKHLLKALIPQL 405 (571)
Q Consensus 377 iDaDEfL~p~~~~~~~~~~~~L~dlL~~~ 405 (571)
+|+|--+... ..|.++++..
T Consensus 111 ~~~d~Pli~~---------~~i~~li~~~ 130 (246)
T 3f1c_A 111 HDAVRPFLTH---------RIIEENIDAA 130 (246)
T ss_dssp EETTCTTCCH---------HHHHHHHHHH
T ss_pred ecCcccCCCH---------HHHHHHHHHH
Confidence 9999855543 4677776654
No 29
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=36.23 E-value=1.7e+02 Score=26.96 Aligned_cols=84 Identities=6% Similarity=0.016 Sum_probs=45.1
Q ss_pred HHHHhhhcC-ccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEe--cC-CchhHHHHHHHHHHHhcCCCcEEEEecCCcee
Q 008286 308 WVIYHTKIG-VEKFILYDNGSEDDLQNVVNELNGDGYNVTTLL--WI-WPKTQEAGFSHNAIHAKHSCKWMLYIDVDEFV 383 (571)
Q Consensus 308 wIeyH~~lG-vd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~--Wp-~~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEfL 383 (571)
.|+.-+..| +++|+|..+ .+...+.++.+ |..+...+ +. +..+...+...++.......++++++++|.-+
T Consensus 35 ~l~~~~~~~~~~~ivvv~~--~~~i~~~~~~~---~~~~~~~~~~~~~~~~g~~~sv~~~l~~~~~~~d~vlv~~~D~P~ 109 (228)
T 1ezi_A 35 TINAAISSKCFDRIIVSTD--GGLIAEEAKNF---GVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPL 109 (228)
T ss_dssp HHHHHHHHCCCSEEEEEES--CHHHHHHHHHT---TCEEEECCC------CHHHHHHHHHHHHHTCCSEEEEECCTTCTT
T ss_pred HHHHHHhCCCCCEEEEECC--CHHHHHHHHHc---CCEEEeCchHHcCCCCChHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 344433456 799999885 35555666554 44331111 00 11222233333333232357999999999865
Q ss_pred ecCCCCCCCCcHHHHHHhhhcc
Q 008286 384 YSPSWHDSGPSKHLLKALIPQL 405 (571)
Q Consensus 384 ~p~~~~~~~~~~~~L~dlL~~~ 405 (571)
... ..|..+++..
T Consensus 110 ~~~---------~~i~~l~~~~ 122 (228)
T 1ezi_A 110 RTG---------AHIREAFSLF 122 (228)
T ss_dssp CCH---------HHHHHHHTTC
T ss_pred CCH---------HHHHHHHHHH
Confidence 542 4677777754
No 30
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=35.49 E-value=2e+02 Score=26.66 Aligned_cols=84 Identities=7% Similarity=0.069 Sum_probs=45.6
Q ss_pred HHHHHHHHhhhcCc-cEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCCCcEEEEecCCce
Q 008286 304 FVKEWVIYHTKIGV-EKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHSCKWMLYIDVDEF 382 (571)
Q Consensus 304 ~L~EwIeyH~~lGv-d~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEf 382 (571)
.|...|+.-+..|+ ++++|..+. +...+.++.+ |..+...+-++..++.. .-.++... ..++++++++|--
T Consensus 29 li~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~~---~~~~~~~~~~~~~g~~~-~~~~~~~~--~~~~~lv~~~D~P 100 (245)
T 1h7e_A 29 MIQHVYERALQVAGVAEVWVATDD--PRVEQAVQAF---GGKAIMTRNDHESGTDR-LVEVMHKV--EADIYINLQGDEP 100 (245)
T ss_dssp HHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHHT---TCEEEECCSCCSSHHHH-HHHHHHHS--CCSEEEECCTTCT
T ss_pred HHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHHc---CCeEEeCCCccCCcHHH-HHHHHHhC--CCCEEEEEcCCcC
Confidence 34434554445676 999998864 5555666554 54332211122233322 22233222 5799999999986
Q ss_pred eecCCCCCCCCcHHHHHHhhhc
Q 008286 383 VYSPSWHDSGPSKHLLKALIPQ 404 (571)
Q Consensus 383 L~p~~~~~~~~~~~~L~dlL~~ 404 (571)
+... ..|..+++.
T Consensus 101 ~~~~---------~~i~~l~~~ 113 (245)
T 1h7e_A 101 MIRP---------RDVETLLQG 113 (245)
T ss_dssp TCCH---------HHHHHHHHH
T ss_pred cCCH---------HHHHHHHHH
Confidence 5542 356666554
No 31
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=33.80 E-value=72 Score=28.56 Aligned_cols=88 Identities=14% Similarity=0.134 Sum_probs=44.1
Q ss_pred HHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCCCcEEEEecCCcee
Q 008286 304 FVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHSCKWMLYIDVDEFV 383 (571)
Q Consensus 304 ~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEfL 383 (571)
.|...|+--...|+++++|..+...+.. .+.+...|+.+...+ .+..+...++..++.......++++++++|--+
T Consensus 33 ll~~~l~~l~~~~~~~i~vv~~~~~~~~---~~~~~~~~~~~~~~~-~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~ 108 (197)
T 2wee_A 33 VLGATLDVARQAGFDQLILTLGGAASAV---RAAMALDGTDVVVVE-DVERGCAASLRVALARVHPRATGIVLMLGDQPQ 108 (197)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTHHHH---HHHSCCTTSEEEECC-----CCHHHHHHHHTTSCTTEEEEEEEETTCTT
T ss_pred HHHHHHHHHHhcCCCcEEEEeCCCHHHH---HHHhccCCCEEEECC-CcccCHHHHHHHHHHHhcccCCeEEEEeCCcCC
Confidence 3433444444468999999876543333 333333355332211 111222333333332221246899999999854
Q ss_pred ecCCCCCCCCcHHHHHHhhhc
Q 008286 384 YSPSWHDSGPSKHLLKALIPQ 404 (571)
Q Consensus 384 ~p~~~~~~~~~~~~L~dlL~~ 404 (571)
... ..|..+++.
T Consensus 109 ~~~---------~~i~~l~~~ 120 (197)
T 2wee_A 109 VAP---------ATLRRIIDV 120 (197)
T ss_dssp CCH---------HHHHHHHHH
T ss_pred CCH---------HHHHHHHhh
Confidence 432 456666664
No 32
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=32.16 E-value=3.4e+02 Score=25.82 Aligned_cols=75 Identities=9% Similarity=-0.014 Sum_probs=39.0
Q ss_pred HHHHhhhcCccEEEEEEcCCC-hhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCCCcEEEEecCCceee
Q 008286 308 WVIYHTKIGVEKFILYDNGSE-DDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHSCKWMLYIDVDEFVY 384 (571)
Q Consensus 308 wIeyH~~lGvd~f~IYDn~St-D~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEfL~ 384 (571)
.|+.-...|+++|+|..+... +...+.+......|..+....-+...+...++..++... ..++++++.+|..+.
T Consensus 61 ~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~--~~~~~lv~~~D~~~~ 136 (269)
T 4ecm_A 61 AVYKLKQCDITDIMIITGKEHMGDVVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCEDFV--GNDRMVVILGDNIFS 136 (269)
T ss_dssp HHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSSCCCHHHHHHTTHHHH--TTSEEEEEETTEEES
T ss_pred HHHHHHHCCCCEEEEECChhhHHHHHHHHhhccccCceEEEeeCCccCcHHHHHHHHHHhc--CCCcEEEEeCCccCc
Confidence 344444569999999887543 444444432212344444332222222322232222111 268999999999765
No 33
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=29.44 E-value=89 Score=26.48 Aligned_cols=62 Identities=18% Similarity=0.401 Sum_probs=40.2
Q ss_pred CCceEEEEEEecchHHHHHHHHHHhhhcCccE-EEEEEcCCChhHHHHHHhhcCCCcEEEEEec
Q 008286 288 PKSEICVCTMVYNVAKFVKEWVIYHTKIGVEK-FILYDNGSEDDLQNVVNELNGDGYNVTTLLW 350 (571)
Q Consensus 288 ~k~~IcVctivkNEa~~L~EwIeyH~~lGvd~-f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~W 350 (571)
+||.-.++..+-+.-.|-..-|.+-+.+|++- |+|||. ......+.-++....|++|..+.-
T Consensus 47 kkynativvvvvddkewaekairfvkslgaqvliiiydq-dqnrleefsrevrrrgfevrtvts 109 (134)
T 2l69_A 47 KKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQ-DQNRLEEFSREVRRRGFEVRTVTS 109 (134)
T ss_dssp TCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEECS-CHHHHHHHHHHHHHTTCCEEEESS
T ss_pred HHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeC-chhHHHHHHHHHHhcCceEEEecC
Confidence 44555555556677777777788888899984 556664 334555556666667887765543
No 34
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=27.99 E-value=1.1e+02 Score=31.41 Aligned_cols=89 Identities=13% Similarity=0.052 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcCCCcEEEEecCCcee
Q 008286 304 FVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKHSCKWMLYIDVDEFV 383 (571)
Q Consensus 304 ~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEfL 383 (571)
.|...|+.-...|+++++|..+...+...+.++.+ ++ ..+.-+...+...++..++ ......++++++++|--+
T Consensus 38 li~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~~---~~--~~v~~~~~~g~~~~i~~~~-~~~~~~~~~lv~~~D~P~ 111 (459)
T 4fce_A 38 MVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLADP---SL--NWVLQAEQLGTGHAMQQAA-PHFADDEDILMLYGDVPL 111 (459)
T ss_dssp HHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC----------CEEECSSCCCHHHHHHHHG-GGSCTTSEEEEEETTCTT
T ss_pred HHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhccC---Cc--EEEeCCCCCCcHHHHHHHH-HhcCCCCcEEEEeCCccc
Confidence 33333444445689999999876544444444332 32 2222122222333333232 222346899999999844
Q ss_pred ecCCCCCCCCcHHHHHHhhhccCC
Q 008286 384 YSPSWHDSGPSKHLLKALIPQLHS 407 (571)
Q Consensus 384 ~p~~~~~~~~~~~~L~dlL~~~p~ 407 (571)
... ..|.++++...+
T Consensus 112 i~~---------~~i~~l~~~~~~ 126 (459)
T 4fce_A 112 ISV---------DTLQRLLAAKPE 126 (459)
T ss_dssp CCH---------HHHHHHHHHCCT
T ss_pred CCH---------HHHHHHHHHHhh
Confidence 432 467777776543
No 35
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=25.77 E-value=3.5e+02 Score=25.52 Aligned_cols=86 Identities=12% Similarity=0.176 Sum_probs=44.3
Q ss_pred HHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHh-cCCCcEEEEecCCce
Q 008286 304 FVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHA-KHSCKWMLYIDVDEF 382 (571)
Q Consensus 304 ~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~-~~~~dWVlfiDaDEf 382 (571)
.|...|+--...|+++|+|..+. +...++++.+ |..+...+.....++. ....++... ....++++++++|--
T Consensus 29 li~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~~---~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~vlv~~~D~P 102 (262)
T 1vic_A 29 MIQHVFEKALQSGASRVIIATDN--ENVADVAKSF---GAEVCMTSVNHNSGTE-RLAEVVEKLAIPDNEIIVNIQGDEP 102 (262)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHHT---TCEEEECCCSSCCHHH-HHHHHHHHTTCCTTCEEEECCTTCT
T ss_pred HHHHHHHHHHhCCCceEEEECCc--HHHHHHHHhc---CCEEEECCccccCChH-HHHHHHHHhccCCCCEEEEEeCCcC
Confidence 33333444445688999988753 5556666554 5434222111122221 122222111 125799999999985
Q ss_pred eecCCCCCCCCcHHHHHHhhhc
Q 008286 383 VYSPSWHDSGPSKHLLKALIPQ 404 (571)
Q Consensus 383 L~p~~~~~~~~~~~~L~dlL~~ 404 (571)
+... ..|.++++.
T Consensus 103 ~i~~---------~~i~~l~~~ 115 (262)
T 1vic_A 103 LIPP---------VIVRQVADN 115 (262)
T ss_dssp TCCH---------HHHHHHHHH
T ss_pred ccCH---------HHHHHHHHH
Confidence 5432 356666554
No 36
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=24.89 E-value=3e+02 Score=25.45 Aligned_cols=81 Identities=11% Similarity=0.067 Sum_probs=43.6
Q ss_pred HHHHhhhcC-ccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEec---CC-chhHHHHHHHHHHHhcCCCcEEEEecCCce
Q 008286 308 WVIYHTKIG-VEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLW---IW-PKTQEAGFSHNAIHAKHSCKWMLYIDVDEF 382 (571)
Q Consensus 308 wIeyH~~lG-vd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~W---p~-~~~Q~aa~ndcl~r~~~~~dWVlfiDaDEf 382 (571)
.|+--+..| +++|+|..+ .+...++++.+ |..+...+. .+ ..++ .+..+++. .....++++++++|.-
T Consensus 34 ~i~~~~~~~~~~~ivv~~~--~~~i~~~~~~~---g~~~~~~~~~~~~~~~~~~-~~v~~al~-~~~~~d~vlv~~~D~P 106 (229)
T 1qwj_A 34 VLRAALDAGVFQSVWVSTD--HDEIENVAKQF---GAQVHRRSSETSKDSSTSL-DAIVEFLN-YHNEVDIVGNIQATSP 106 (229)
T ss_dssp HHHHHHHHTCCSEEEEEES--CHHHHHHHHHT---TCEEEECCGGGSSTTCCHH-HHHHHHHT-TCTTCSEEEEECTTCT
T ss_pred HHHHHHhCCCcCEEEEECC--hHHHHHHHHHc---CCEEEeChhhhcCCCCcHH-HHHHHHHH-hcCCCCEEEEecCCCC
Confidence 344433457 599998873 45666666554 543422211 01 1122 22333332 2235799999999996
Q ss_pred eecCCCCCCCCcHHHHHHhhhc
Q 008286 383 VYSPSWHDSGPSKHLLKALIPQ 404 (571)
Q Consensus 383 L~p~~~~~~~~~~~~L~dlL~~ 404 (571)
+..+ ..|..+++.
T Consensus 107 li~~---------~~i~~l~~~ 119 (229)
T 1qwj_A 107 CLHP---------TDLQKVAEM 119 (229)
T ss_dssp TCCH---------HHHHHHHHH
T ss_pred cCCH---------HHHHHHHHH
Confidence 6643 456666654
No 37
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=24.81 E-value=2.3e+02 Score=25.91 Aligned_cols=88 Identities=10% Similarity=-0.008 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhcC-ccEEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCCchhHHHHHHHHHHHhcC-----CCcEEEEe
Q 008286 304 FVKEWVIYHTKIG-VEKFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIWPKTQEAGFSHNAIHAKH-----SCKWMLYI 377 (571)
Q Consensus 304 ~L~EwIeyH~~lG-vd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~~~~Q~aa~ndcl~r~~~-----~~dWVlfi 377 (571)
.|...|+--...+ +++++|..+...+...+ +..+... .++.+. ...+...+...++..... ..++++++
T Consensus 36 li~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~~~--~i~~~~--~~~~~~~si~~~l~~~~~~~~~~~~~~vlv~ 110 (231)
T 1vgw_A 36 VLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTAFPQ--VRVWKN--GGQTRAETVRNGVAKLLETGLAAETDNILVH 110 (231)
T ss_dssp HHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHHCTT--SEEECC--CCSSHHHHHHHHHHHHHHHSSSCTTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhcCCC--ceEEEc--CCCcHHHHHHHHHHHHhhhccCCCCCEEEEE
Confidence 3433444433444 89999988765555656 5554322 244432 222233333333322211 57999999
Q ss_pred cCCceeecCCCCCCCCcHHHHHHhhhcc
Q 008286 378 DVDEFVYSPSWHDSGPSKHLLKALIPQL 405 (571)
Q Consensus 378 DaDEfL~p~~~~~~~~~~~~L~dlL~~~ 405 (571)
++|--+... ..|..+++..
T Consensus 111 ~~D~p~~~~---------~~i~~l~~~~ 129 (231)
T 1vgw_A 111 DAARCCLPS---------EALARLIEQA 129 (231)
T ss_dssp CTTCTTCCH---------HHHHHHHHHH
T ss_pred cCCcccCCH---------HHHHHHHHHH
Confidence 999866542 4566766653
No 38
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=22.69 E-value=2.5e+02 Score=23.72 Aligned_cols=53 Identities=23% Similarity=0.505 Sum_probs=42.3
Q ss_pred EEecchHHHHHHHHHHhhhcCccEEEEEEcCCChhHHHHHHhhcCCCcEEEEE
Q 008286 296 TMVYNVAKFVKEWVIYHTKIGVEKFILYDNGSEDDLQNVVNELNGDGYNVTTL 348 (571)
Q Consensus 296 tivkNEa~~L~EwIeyH~~lGvd~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i 348 (571)
.+..|.-+.|.|.++.-..+|..-|.+..+....+..+.-+.....|+.|..+
T Consensus 55 liisndkqllkemlelisklgykvflllqdqdeneleefkrkiesqgyevrkv 107 (134)
T 2lci_A 55 LIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKV 107 (134)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEE
T ss_pred EEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeec
Confidence 45679999999999998889998777777766677788877888889976544
No 39
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=20.66 E-value=1e+02 Score=31.22 Aligned_cols=96 Identities=16% Similarity=0.232 Sum_probs=52.8
Q ss_pred CCCceEEEEEE-ecchHHHHHHHHHH---hhhcCcc-EEEEEEcCCChhHHHHHHhhcCCCcEEEEEecCC-chhHH---
Q 008286 287 EPKSEICVCTM-VYNVAKFVKEWVIY---HTKIGVE-KFILYDNGSEDDLQNVVNELNGDGYNVTTLLWIW-PKTQE--- 357 (571)
Q Consensus 287 ~~k~~IcVcti-vkNEa~~L~EwIey---H~~lGvd-~f~IYDn~StD~t~eIL~~y~~~G~~Vt~i~Wp~-~~~Q~--- 357 (571)
..+.+|++..+ ++....+|..|++. |...|.. ++||+.++ .+....| .+ ..|-.+.+..-+. .+.|.
T Consensus 55 ~~n~tIGl~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~-~~~vP~v--~l-~~~r~~~V~~v~~~~~Wqd~sm 130 (298)
T 3ioh_A 55 LQNTTIGLTVFAIKKYVAFLKLFLETAEKHFMVGHRVHYYVFTDQ-PAAVPRV--TL-GTGRQLSVLEVRAYKRWQDVSM 130 (298)
T ss_dssp HTTCEEEEEEEECGGGGGGHHHHHHHHHHHBSTTSEEEEEEEESC-GGGSCCC--CC-CTTEEEEEEECCCCSSHHHHHH
T ss_pred HhCCcEEEEEEEeCcHHHHHHHHHHhHHHhccCCceEEEEEEeCC-hhhCCcc--cc-CCCCeEEEEEeccccCCccccH
Confidence 34567766654 57777788777765 6667776 44444443 2222111 01 1233344443322 23343
Q ss_pred ---HHHH-HHHHHhcCCCcEEEEecCCceeecC
Q 008286 358 ---AGFS-HNAIHAKHSCKWMLYIDVDEFVYSP 386 (571)
Q Consensus 358 ---aa~n-dcl~r~~~~~dWVlfiDaDEfL~p~ 386 (571)
..+. ++..+...+.|+++++|+|-.+.-.
T Consensus 131 ~Rm~~i~~~~~~~~~~EvDyLfc~dvd~~F~~~ 163 (298)
T 3ioh_A 131 RRMEMISDFCERRFLSEVDYLVCVDVDMEFRDH 163 (298)
T ss_dssp HHHHHHHHHHHHTHHHHCSEEEEEESSEEECSC
T ss_pred HHHHHHHHHHHHHHhhcCCEEEEecCCCeeccC
Confidence 2222 2333456789999999999888764
Done!