BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008287
(571 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 130/273 (47%), Gaps = 64/273 (23%)
Query: 270 SLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV 329
S+D S ++ A+P+ I + KKLDL +N++ LP
Sbjct: 20 SVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSK---------------------- 55
Query: 330 ALSRLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVETNDLEELP-HTIGQCSSLRELR 387
A RL +L L L N L +LP I L +L+ L V N L+ LP Q +L ELR
Sbjct: 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115
Query: 388 VDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLC 447
+D N+LK+LP P SL+ L L + +NEL+S+P+ +
Sbjct: 116 LDRNQLKSLP----------------------PRVFDSLTKLTYLSLGYNELQSLPKGV- 152
Query: 448 F--ATTLVKMNIGNNFADLRALPR-SIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVL 503
F T+L ++ + NN L+ +P + L L+ L + NNQ++ +P+ +F L +L++L
Sbjct: 153 FDKLTSLKELRLYNN--QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210
Query: 504 RVQENPLEVPPRNIVEMGAQAVVQYMADLVEKR 536
++QENP + I+ YMA ++K+
Sbjct: 211 QLQENPWDCTCNGII---------YMAKWLKKK 234
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Query: 266 SSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLDLRGNQI 324
S ++D R +VPA I ++ + L LH N+I +L P L++L L L NQ+
Sbjct: 19 CSGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76
Query: 325 SALPVA-LSRLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVETNDLEELPHTIGQCSS 382
ALPV L +L LDLG+N L+ LP ++ L+ LK+L + N L ELP I + +
Sbjct: 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTH 136
Query: 383 LRELRVDYNRLKALPEAVGKIHTLEVLSVRY 413
L L +D N+LK++P G L L+ Y
Sbjct: 137 LTHLALDQNQLKSIPH--GAFDRLSSLTHAY 165
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 72/159 (45%), Gaps = 26/159 (16%)
Query: 289 SSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISAL-PVALSRLVRLEELDLGSNNL 347
S +D + R +P I ++YL NQI+ L P L+ L+EL LGSN L
Sbjct: 19 CSGTTVDCRSKRHASVPAGIPTNAQILYL--HDNQITKLEPGVFDSLINLKELYLGSNQL 76
Query: 348 SSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAV-GKIHTL 406
+LP +G SL +L V L + N+L LP AV ++ L
Sbjct: 77 GALP--VGVFDSLTQLTV--------------------LDLGTNQLTVLPSAVFDRLVHL 114
Query: 407 EVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPES 445
+ L + N + +LP + L+ L L + N+L+S+P
Sbjct: 115 KELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHG 153
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 83/209 (39%), Gaps = 56/209 (26%)
Query: 317 LDLRGNQISALPVALSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETNDLEELPH 375
+D R + +++P + ++ L L N ++ L P SLI+LK+L + +N L LP
Sbjct: 24 VDCRSKRHASVPAGIPTNAQI--LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP- 80
Query: 376 TIGQCSSLRELRV---DYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLREL 432
+G SL +L V N+L LP AV L L+EL
Sbjct: 81 -VGVFDSLTQLTVLDLGTNQLTVLPSAV----------------------FDRLVHLKEL 117
Query: 433 DVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLP- 491
+ N+L LPR I L L L + NQ++ +P
Sbjct: 118 FMCCNKLTE-------------------------LPRGIERLTHLTHLALDQNQLKSIPH 152
Query: 492 DSFRMLSRLRVLRVQENPLEVPPRNIVEM 520
+F LS L + NP + R+I+ +
Sbjct: 153 GAFDRLSSLTHAYLFGNPWDCECRDIMYL 181
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 96/187 (51%), Gaps = 29/187 (15%)
Query: 330 ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTI-GQCSSLRELRV 388
+ L + L LG N L + ++ L +L LI+ N L+ LP+ + + ++L+EL +
Sbjct: 58 GIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 389 DYNRLKALPEAV-GKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELESVPESL 446
N+L++LP+ V K+ L L++ +N ++ LP L++L ELD+S+N+L+S+PE +
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176
Query: 447 CFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRV 505
L L++L + NQ++ +PD F L+ L+ + +
Sbjct: 177 ------------------------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212
Query: 506 QENPLEV 512
+NP +
Sbjct: 213 HDNPWDC 219
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 25/143 (17%)
Query: 261 SIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDSIGD-LLSLVYLD 318
++ +L++L L L+ N++ ++P L++LK+L L N++ LPD + D L +L YL+
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 319 LRGNQISALPVA-LSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTI 377
L NQ+ +LP +L L ELDL N L SLP+ +
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV----------------------F 177
Query: 378 GQCSSLRELRVDYNRLKALPEAV 400
+ + L++LR+ N+LK++P+ V
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGV 200
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 125/264 (47%), Gaps = 37/264 (14%)
Query: 258 LPDSI-GKLSSLVSLDLSENRIV-AVPATIGGLSSLKKLDLHANRII-ELP-DSIGDLLS 313
+PD + G +L LDLS N AVP G S L+ L L +N ELP D++ +
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 341
Query: 314 LVYLDLRGNQISA-LPVALSRL-VRLEELDLGSNNLSS--LPDSI-GSLISLKKLIVETN 368
L LDL N+ S LP +L+ L L LDL SNN S LP+ +L++L ++ N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 369 DLE-ELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLS 427
++P T+ CS L L + +N L +P+++ SLS
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSG----------------------TIPSSLGSLS 439
Query: 428 SLRELDVSFNELES-VPESLCFATTLVKMNIGNNFADLRA-LPRSIGNLEMLEELDISNN 485
LR+L + N LE +P+ L + TL + + +F DL +P + N L + +SNN
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLIL--DFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 486 QIRV-LPDSFRMLSRLRVLRVQEN 508
++ +P L L +L++ N
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNN 521
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 144/338 (42%), Gaps = 90/338 (26%)
Query: 261 SIGKLSSLVSLDLSENRIVAVPATIGG---LSSLKKLDLHANRIIELPDSIGDLLS---- 313
S+G S L L++S N + P + G L+SL+ LDL AN I + +G +LS
Sbjct: 118 SLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSI-SGANVVGWVLSDGCG 175
Query: 314 -LVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLE- 371
L +L + GN+IS V +SR V LE LD+ SNN S+ +G +L+ L + N L
Sbjct: 176 ELKHLAISGNKISG-DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 234
Query: 372 ELPHTIGQCSSLRELRVDYNR---------LKAL--------------PEAV-GKIHTLE 407
+ I C+ L+ L + N+ LK+L P+ + G TL
Sbjct: 235 DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 408 VLSVRYNNI-------------------------KQLPT-TMSSLSSLRELDVSFNELES 441
L + N+ +LP T+ + L+ LD+SFNE
Sbjct: 295 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 354
Query: 442 -VPESLC-FATTLVKMNI-GNNFAD------------------------LRALPRSIGNL 474
+PESL + +L+ +++ NNF+ +P ++ N
Sbjct: 355 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 414
Query: 475 EMLEELDISNNQIR-VLPDSFRMLSRLRVLRVQENPLE 511
L L +S N + +P S LS+LR L++ N LE
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 128/307 (41%), Gaps = 77/307 (25%)
Query: 258 LPDSIGKLSSLVSLDLSENRIVA-VPATIGGLSSLKKLDLHANRI-IELPDSIGDLLSLV 315
+P ++ S LVSL LS N + +P+++G LS L+ L L N + E+P + + +L
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Query: 316 YLDLRGNQISA-LPVALSRLVRLEELDLGSNNLSS-LPDSIGSLISLKKLIVETNDLE-E 372
L L N ++ +P LS L + L +N L+ +P IG L +L L + N
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 373 LPHTIGQCSSLRELRVDYNRLKA-LPEAV----GKI------------------------ 403
+P +G C SL L ++ N +P A+ GKI
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 586
Query: 404 --HTLEVLSVRYNNIKQLPT-----------------TMSSLSSLRELDVSFNELES-VP 443
+ LE +R + +L T T + S+ LD+S+N L +P
Sbjct: 587 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 444 ESLCFATTLVKMNIGNN---------FADLRAL--------------PRSIGNLEMLEEL 480
+ + L +N+G+N DLR L P+++ L ML E+
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 481 DISNNQI 487
D+SNN +
Sbjct: 707 DLSNNNL 713
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 266 SSLVSLDLSENRIVA-VPATIGGLSSLKKLDLHANRII-ELPDSIGDLLSLVYLDLRGNQ 323
S++ LD+S N + +P IG + L L+L N I +PD +GDL L LDL N+
Sbjct: 629 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 324 ISA-LPVALSRLVRLEELDLGSNNLSS 349
+ +P A+S L L E+DL +NNLS
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSG 715
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 125/264 (47%), Gaps = 37/264 (14%)
Query: 258 LPDSI-GKLSSLVSLDLSENRIV-AVPATIGGLSSLKKLDLHANRII-ELP-DSIGDLLS 313
+PD + G +L LDLS N AVP G S L+ L L +N ELP D++ +
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 314 LVYLDLRGNQISA-LPVALSRL-VRLEELDLGSNNLSS--LPDSI-GSLISLKKLIVETN 368
L LDL N+ S LP +L+ L L LDL SNN S LP+ +L++L ++ N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 369 DLE-ELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLS 427
++P T+ CS L L + +N L +P+++ SLS
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSG----------------------TIPSSLGSLS 442
Query: 428 SLRELDVSFNELES-VPESLCFATTLVKMNIGNNFADLRA-LPRSIGNLEMLEELDISNN 485
LR+L + N LE +P+ L + TL + + +F DL +P + N L + +SNN
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLIL--DFNDLTGEIPSGLSNCTNLNWISLSNN 500
Query: 486 QIRV-LPDSFRMLSRLRVLRVQEN 508
++ +P L L +L++ N
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNN 524
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 142/340 (41%), Gaps = 94/340 (27%)
Query: 261 SIGKLSSLVSLDLSENRIVAVPATIGG---LSSLKKLDLHANRIIE-------LPDSIGD 310
S+G S L L++S N + P + G L+SL+ LDL AN I L D G+
Sbjct: 121 SLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179
Query: 311 LLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDL 370
L +L + GN+IS V +SR V LE LD+ SNN S+ +G +L+ L + N L
Sbjct: 180 L---KHLAISGNKISG-DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 235
Query: 371 E-ELPHTIGQCSSLRELRVDYNR---------LKAL--------------PEAV-GKIHT 405
+ I C+ L+ L + N+ LK+L P+ + G T
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT 295
Query: 406 LEVLSVRYNNI-------------------------KQLPT-TMSSLSSLRELDVSFNEL 439
L L + N+ +LP T+ + L+ LD+SFNE
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 440 ES-VPESLC-FATTLVKMNI-GNNFAD------------------------LRALPRSIG 472
+PESL + +L+ +++ NNF+ +P ++
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 473 NLEMLEELDISNNQIR-VLPDSFRMLSRLRVLRVQENPLE 511
N L L +S N + +P S LS+LR L++ N LE
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 128/307 (41%), Gaps = 77/307 (25%)
Query: 258 LPDSIGKLSSLVSLDLSENRIVA-VPATIGGLSSLKKLDLHANRI-IELPDSIGDLLSLV 315
+P ++ S LVSL LS N + +P+++G LS L+ L L N + E+P + + +L
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 316 YLDLRGNQISA-LPVALSRLVRLEELDLGSNNLSS-LPDSIGSLISLKKLIVETNDLE-E 372
L L N ++ +P LS L + L +N L+ +P IG L +L L + N
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 373 LPHTIGQCSSLRELRVDYNRLKA-LPEAV----GKI------------------------ 403
+P +G C SL L ++ N +P A+ GKI
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 404 --HTLEVLSVRYNNIKQLPT-----------------TMSSLSSLRELDVSFNELES-VP 443
+ LE +R + +L T T + S+ LD+S+N L +P
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 444 ESLCFATTLVKMNIGNN---------FADLRAL--------------PRSIGNLEMLEEL 480
+ + L +N+G+N DLR L P+++ L ML E+
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 481 DISNNQI 487
D+SNN +
Sbjct: 710 DLSNNNL 716
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 266 SSLVSLDLSENRIVA-VPATIGGLSSLKKLDLHANRII-ELPDSIGDLLSLVYLDLRGNQ 323
S++ LD+S N + +P IG + L L+L N I +PD +GDL L LDL N+
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 324 ISA-LPVALSRLVRLEELDLGSNNLSS 349
+ +P A+S L L E+DL +NNLS
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSG 718
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 6/188 (3%)
Query: 288 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVA-LSRLVRLEELDLGSNN 346
L +++ L L N++ ++ ++ +L +L YL L GNQ+ +LP +L L+EL L N
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 347 LSSLPDSI-GSLISLKKLIVETNDLEELPHTI-GQCSSLRELRVDYNRLKALPEAV-GKI 403
L SLPD + L +L L + N L+ LP + + ++L L +D N+L++LPE V K+
Sbjct: 121 LQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL 180
Query: 404 HTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFA 462
L+ LS+ N +K +P L+SL + + N + + + + + + G F
Sbjct: 181 TQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFG 240
Query: 463 DLRALPRS 470
L P S
Sbjct: 241 YLNLDPDS 248
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 92/167 (55%), Gaps = 8/167 (4%)
Query: 357 LISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNI 416
L S+ ++I +D++ + I ++R L + N+L + A+ ++ L L + N +
Sbjct: 40 LNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQL 97
Query: 417 KQLPT-TMSSLSSLRELDVSFNELESVPESLCFA-TTLVKMNIGNNFADLRALPRSIGN- 473
+ LP L++L+EL + N+L+S+P+ + T L + + +N L++LP+ + +
Sbjct: 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN--QLQSLPKGVFDK 155
Query: 474 LEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVPPRNIVE 519
L L LD+ NNQ++ LP+ F L++L+ L + +N L+ P + +
Sbjct: 156 LTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFD 202
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 232 SLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSS 290
++ + +G ++++ Q K +D++ P I + LDL + + AT GL+
Sbjct: 6 TVTGCTCNEGKKEVDCQGKSLDSV---PSGIP--ADTEKLDLQSTGLATLSDATFRGLTK 60
Query: 291 LKKLDLHANRIIELPDSI-GDLLSLVYLDLRGNQISALPVA-LSRLVRLEELDLGSNNLS 348
L L+L N++ L + DL L L L NQ+++LP+ L +L++L LG N L
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 349 SLPDSI-GSLISLKKLIVETNDLEELP-HTIGQCSSLRELRVDYNRLKALPEA----VGK 402
SLP + L LK+L + TN L+ +P + ++L+ L + N+L+++P +GK
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180
Query: 403 IHTLEVLSVRYN 414
+ T+ + +++
Sbjct: 181 LQTITLFGNQFD 192
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 91/201 (45%), Gaps = 31/201 (15%)
Query: 317 LDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDLEELPH 375
+D +G + ++P + E+LDL S L++L D + L L L ++ N L+ L
Sbjct: 19 VDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76
Query: 376 TI-GQCSSLRELRVDYNRLKALPEAV-GKIHTLEVLSVRYNNIKQLPT-TMSSLSSLREL 432
+ + L L + N+L +LP V + L+ L + N +K LP+ L+ L+EL
Sbjct: 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 433 DVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLP- 491
++ N+L+S+P + L L+ L +S NQ++ +P
Sbjct: 137 RLNTNQLQSIPAG------------------------AFDKLTNLQTLSLSTNQLQSVPH 172
Query: 492 DSFRMLSRLRVLRVQENPLEV 512
+F L +L+ + + N +
Sbjct: 173 GAFDRLGKLQTITLFGNQFDC 193
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 232 SLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSS 290
++ + +G ++++ Q K +D++ P I + LDL + + AT GL+
Sbjct: 6 TVTGCTCNEGKKEVDCQGKSLDSV---PSGIP--ADTEKLDLQSTGLATLSDATFRGLTK 60
Query: 291 LKKLDLHANRIIELPDSI-GDLLSLVYLDLRGNQISALPVA-LSRLVRLEELDLGSNNLS 348
L L+L N++ L + DL L L L NQ+++LP+ L +L++L LG N L
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 349 SLPDSI-GSLISLKKLIVETNDLEELP-HTIGQCSSLRELRVDYNRLKALPEA----VGK 402
SLP + L LK+L + TN L+ +P + ++L+ L + N+L+++P +GK
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180
Query: 403 IHTLEVLSVRYN 414
+ T+ + +++
Sbjct: 181 LQTITLFGNQFD 192
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 91/201 (45%), Gaps = 31/201 (15%)
Query: 317 LDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDLEELPH 375
+D +G + ++P + E+LDL S L++L D + L L L ++ N L+ L
Sbjct: 19 VDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76
Query: 376 TI-GQCSSLRELRVDYNRLKALPEAV-GKIHTLEVLSVRYNNIKQLPT-TMSSLSSLREL 432
+ + L L + N+L +LP V + L+ L + N +K LP+ L+ L+EL
Sbjct: 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 433 DVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLP- 491
++ N+L+S+P + L L+ L +S NQ++ +P
Sbjct: 137 RLNTNQLQSIPAG------------------------AFDKLTNLQTLSLSTNQLQSVPH 172
Query: 492 DSFRMLSRLRVLRVQENPLEV 512
+F L +L+ + + N +
Sbjct: 173 GAFDRLGKLQTITLFGNQFDC 193
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 137/295 (46%), Gaps = 22/295 (7%)
Query: 235 EVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKK 293
E +S +L L ++ +E P + L +L +L L NR+ +P GLS+L K
Sbjct: 51 EFASFPHLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108
Query: 294 LDLHANRIIELPDSI-GDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSLP 351
LD+ N+I+ L D + DL +L L++ N + + A S L LE+L L NL+S+P
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168
Query: 352 ----DSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRV-DYNRLKALPEAVGKIHTL 406
+ LI L+ + N + + ++ + L+ L + + L + L
Sbjct: 169 TEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226
Query: 407 EVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVPESLCFATTLVKMN----IGNNF 461
LS+ + N+ +P + L LR L++S+N + ++ S+ L+++ +G
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM--LHELLRLQEIQLVGGQL 284
Query: 462 ADLRALPRSIGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVPPR 515
A + P + L L L++S NQ+ L +S F + L L + NPL R
Sbjct: 285 AVVE--PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%)
Query: 270 SLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV 329
+LDLS +I + A I L +L L+ N + ELP I +L +L LDL N++++LP
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 330 ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEE 372
L +L+ N +++LP G+L +L+ L VE N LE+
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 245 LNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIEL 304
L+L N + NI +I K L L L+ N + +PA I LS+L+ LDL NR+ L
Sbjct: 229 LDLSNLQIFNIS---ANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL 285
Query: 305 PDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 347
P +G L Y N ++ LP L L+ L + N L
Sbjct: 286 PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 54/120 (45%)
Query: 275 ENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRL 334
ENR+V + LDL +I + +I L L L GN ++ LP + L
Sbjct: 210 ENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNL 269
Query: 335 VRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK 394
L LDL N L+SLP +GS LK N + LP G +L+ L V+ N L+
Sbjct: 270 SNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%)
Query: 340 LDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA 399
LDL + + ++ +I L +L + N L ELP I S+LR L + +NRL +LP
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288
Query: 400 VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELE 440
+G L+ N + LP +L +L+ L V N LE
Sbjct: 289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%)
Query: 299 NRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLI 358
NR++ DS D LDL QI + + + L L L N+L+ LP I +L
Sbjct: 211 NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLS 270
Query: 359 SLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQ 418
+L+ L + N L LP +G C L+ N + LP G + L+ L V N +++
Sbjct: 271 NLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 25/112 (22%)
Query: 400 VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGN 459
+ K L L + N++ +LP + +LS+LR LD+S N L S
Sbjct: 243 IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS------------------ 284
Query: 460 NFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLE 511
LP +G+ L+ +N + LP F L L+ L V+ NPLE
Sbjct: 285 -------LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 155/354 (43%), Gaps = 56/354 (15%)
Query: 209 DSTLKS---GAVSGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKL 265
+ST++S G D E +S L E+S +NLQ NI ++
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS----VESINLQKHYFFNIS--SNTFHCF 277
Query: 266 SSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGN-- 322
S L LDL+ + +P+ + GLS+LKKL L AN+ L S + SL +L ++GN
Sbjct: 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337
Query: 323 QISALPVALSRLVRLEELDLGSNNLSSLPDSIG----SLISLKKLIVETND-LEELPHTI 377
++ L L L ELDL +++ + D +L L+ L + N+ L
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIET-SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396
Query: 378 GQCSSLRELRVDYNRLKA--LPEAVGKIHTLEVLSVRYN--------------------- 414
+C L L + + RLK +H L+VL++ ++
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456
Query: 415 --------NIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRA 466
NI++ ++ +L L L +SF +L S+ + A T +KM + + R
Sbjct: 457 QGNHFPKGNIQK-TNSLQTLGRLEILVLSFCDLSSIDQH---AFTSLKMMNHVDLSHNRL 512
Query: 467 LPRSIGNLEMLE--ELDISNNQIR-VLPDSFRMLSRLRVLRVQENPLEVPPRNI 517
SI L L+ L++++N I +LP +LS+ R + +++NPL+ NI
Sbjct: 513 TSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 271 LDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDSIGD-LLSLVYLDLRGNQISALP 328
LDL N + ++P L+SL +L L N++ LP+ + + L SL YL+L NQ+ +LP
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 329 VA-LSRLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVETNDLEELPHTI 377
+L +L+EL L +N L SLPD + L LK L + N L+ +P +
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 87/180 (48%), Gaps = 37/180 (20%)
Query: 363 LIVETNDLEELPHTI-GQCSSLRELRVDYNRLKALPEAV-GKIHTLEVLSVRYNNIKQLP 420
L +ETN L+ LP+ + + +SL +L + N+L++LP V K+ +L L++ N ++ LP
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 421 T-TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEE 479
L+ L+EL ++ N+L+S+P+ + L L++
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGV------------------------FDKLTQLKD 128
Query: 480 LDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVVQYMADLVEKRDA 538
L + NQ++ +PD F L+ L+ + + +NP + ++Y+++ + K
Sbjct: 129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---------TCPGIRYLSEWINKHSG 179
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 126/244 (51%), Gaps = 14/244 (5%)
Query: 278 IVAVPATIGGLSSLKKLDLHANRI-IELPDSIGDLLSLVYLDLRGNQISALPV-ALSRLV 335
+ VPA+I + + L+L N I + D+ L L L L N + + V A + L
Sbjct: 26 LAEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP 83
Query: 336 RLEELDLGSNNLSSLPDSIGSLIS-LKKLIVETNDLEELP-HTIGQCSSLRELRV-DYNR 392
L L+L N L+++P +S L++L + N +E +P + + SLR L + + R
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKR 143
Query: 393 LKALPEAVGK-IHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESV-PESLCFAT 450
L+ + EA + + L L++ N+K +P +++L L EL++S N L+ + P S T
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLT 202
Query: 451 TLVKMNIGNNFADLRALPR-SIGNLEMLEELDISNNQIRVLP-DSFRMLSRLRVLRVQEN 508
+L K+ + + A + + R + +L+ LEEL++S+N + LP D F L RL + + N
Sbjct: 203 SLRKLWLMH--AQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Query: 509 PLEV 512
P
Sbjct: 261 PWHC 264
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 91/207 (43%), Gaps = 47/207 (22%)
Query: 245 LNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIE 303
L L L+ IE + L SL +L+L +NR+ VP LS L++L L N I
Sbjct: 64 LQLSKNLVRKIE--VGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES 121
Query: 304 LPD--------------------------SIGDLLSLVYLDLRGNQISALPVALSRLVRL 337
+P + L++L YL+L + +P L+ LVRL
Sbjct: 122 IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRL 180
Query: 338 EELDLGSNNLSSL-PDSIGSLISLKKL--------IVETNDLEELPHTIGQCSSLRELRV 388
EEL+L N L + P S L SL+KL +E N ++L SL EL +
Sbjct: 181 EELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDL-------KSLEELNL 233
Query: 389 DYNRLKALP-EAVGKIHTLEVLSVRYN 414
+N L +LP + +H LE + + +N
Sbjct: 234 SHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 118/235 (50%), Gaps = 16/235 (6%)
Query: 289 SSLKKLDLHANRI-IELPDSIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNN 346
++ + L+LH N+I I +S L L L L N I + + A + L L L+L N
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 347 LSSLPDSIGSLIS-LKKLIVETNDLEELP-HTIGQCSSLRELRVDYNRLKALP----EAV 400
L+++P+ +S LK+L + N +E +P + + SLR R+D LK L A
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR--RLDLGELKRLSYISEGAF 181
Query: 401 GKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGN 459
+ L L++ N++++P ++ L L ELD+S N L ++ P S L K+ +
Sbjct: 182 EGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240
Query: 460 NFADLRALPR-SIGNLEMLEELDISNNQIRVLP-DSFRMLSRLRVLRVQENPLEV 512
+ ++ + R + NL+ L E+++++N + +LP D F L L + + NP
Sbjct: 241 --SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 101/196 (51%), Gaps = 24/196 (12%)
Query: 234 IEVSSKKGTRDLNLQNKLMDN-IEWLPD-SIGKLSSLVSLDLSENRIVAVPA-TIGGLSS 290
IE+ + G +LN +L DN + +P+ + LS L L L N I ++P+ + S
Sbjct: 103 IEIGAFNGLANLNTL-ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161
Query: 291 LKKLDL-HANRIIELPDSIGDLLS-LVYLDLRGNQISALPVALSRLVRLEELDLGSNNLS 348
L++LDL R+ + + + LS L YL+L + +P L+ L++L+ELDL N+LS
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLS 220
Query: 349 SL-PDSIGSLISLKKL--------IVETNDLEELPHTIGQCSSLRELRVDYNRLKALP-E 398
++ P S L+ L+KL ++E N + L SL E+ + +N L LP +
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL-------QSLVEINLAHNNLTLLPHD 273
Query: 399 AVGKIHTLEVLSVRYN 414
+H LE + + +N
Sbjct: 274 LFTPLHHLERIHLHHN 289
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 117/257 (45%), Gaps = 40/257 (15%)
Query: 271 LDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVA 330
L +S N++ +P + S LK +D+ N + +LPD SL ++ NQ+ LP
Sbjct: 136 LGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNNQLEELP-E 190
Query: 331 LSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDY 390
L L L + +N+L LPD +SL+ ++ N LEELP + L + D
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADN 246
Query: 391 NRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFAT 450
N LK LP+ +LE L+VR N + LP SL+ L + F+ L +P +L +
Sbjct: 247 NLLKTLPDLPP---SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 303
Query: 451 TLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLP----------DSFRMLSR- 499
N L LP S LEEL++SNN++ LP SF L+
Sbjct: 304 A-----SSNEIRSLCDLPPS------LEELNVSNNKLIELPALPPRLERLIASFNHLAEV 352
Query: 500 ------LRVLRVQENPL 510
L+ L V+ NPL
Sbjct: 353 PELPQNLKQLHVEYNPL 369
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 21/169 (12%)
Query: 329 VALSRLV-----RLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSL 383
+A+SRL + EL+L + LSSLP+ L+ L+ N L ELP SL
Sbjct: 60 MAVSRLRDCLDRQAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPEL---PQSL 113
Query: 384 RELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP 443
+ L VD N LKAL + LE L V N +++LP +S S L+ +DV N L+ +P
Sbjct: 114 KSLLVDNNNLKALSDLPP---LLEYLGVSNNQLEKLPELQNS-SFLKIIDVDNNSLKKLP 169
Query: 444 ESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD 492
+ +L + GNN L LP + NL L + NN ++ LPD
Sbjct: 170 D---LPPSLEFIAAGNN--QLEELPE-LQNLPFLTAIYADNNSLKKLPD 212
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 23/196 (11%)
Query: 266 SSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQIS 325
S L L + N++ ++P GL L D N++ LP +L L + NQ++
Sbjct: 121 SGLCKLWIFGNQLTSLPVLPPGLQELSVSD---NQLASLPALPSELCKLWAYN---NQLT 174
Query: 326 ALPVALSRLVRLEELDLGSNNLSSLPDSIGSLIS-LKKLIVETNDLEELPHTIGQCSSLR 384
+LP+ S L +EL + N L+SLP +L S L KL N L LP S L+
Sbjct: 175 SLPMLPSGL---QELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP---ALPSGLK 224
Query: 385 ELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPE 444
EL V NRL +LP ++ L V R ++ LP+ + SLS R N+L +PE
Sbjct: 225 ELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYR------NQLTRLPE 278
Query: 445 SLCFATTLVKMNIGNN 460
SL ++ +N+ N
Sbjct: 279 SLIHLSSETTVNLEGN 294
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 36/235 (15%)
Query: 317 LDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHT 376
L++ GNQ+++LPV L+ EL + SN L+ LP L KL + N L LP
Sbjct: 86 LEVSGNQLTSLPVLPPGLL---ELSIFSNPLTHLPALPSGLC---KLWIFGNQLTSLPVL 139
Query: 377 IGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSF 436
L+EL V N+L +LP ++ L + + ++ LP S L+EL VS
Sbjct: 140 ---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP------SGLQELSVSD 190
Query: 437 NELESVPESLCFATTLVKMNIGNN-FADLRALPRSIGNLEM--------------LEELD 481
N+L S+P + L K+ NN L ALP + L + L+EL
Sbjct: 191 NQLASLP---TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELM 247
Query: 482 ISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVVQYMADLVEKR 536
+S N++ LP + S L L V N L P +++ + ++ V + + +R
Sbjct: 248 VSGNRLTSLP---MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 126/244 (51%), Gaps = 14/244 (5%)
Query: 278 IVAVPATIGGLSSLKKLDLHANRI-IELPDSIGDLLSLVYLDLRGNQISALPV-ALSRLV 335
+ VPA+I + + L+L N I + D+ L L L L N + + V A + L
Sbjct: 26 LAEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP 83
Query: 336 RLEELDLGSNNLSSLPDSIGSLIS-LKKLIVETNDLEELP-HTIGQCSSLRELRV-DYNR 392
L L+L N L+++P +S L++L + N +E +P + + SLR L + + R
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKR 143
Query: 393 LKALPEAVGK-IHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESV-PESLCFAT 450
L+ + EA + + L L++ N+K +P +++L L EL++S N L+ + P S T
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLT 202
Query: 451 TLVKMNIGNNFADLRALPR-SIGNLEMLEELDISNNQIRVLP-DSFRMLSRLRVLRVQEN 508
+L K+ + + A + + R + +L+ LEEL++S+N + LP D F L RL + + N
Sbjct: 203 SLRKLWLMH--AQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Query: 509 PLEV 512
P
Sbjct: 261 PWHC 264
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 91/207 (43%), Gaps = 47/207 (22%)
Query: 245 LNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIE 303
L L L+ IE + L SL +L+L +NR+ VP LS L++L L N I
Sbjct: 64 LQLSKNLVRKIE--VGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES 121
Query: 304 LPD--------------------------SIGDLLSLVYLDLRGNQISALPVALSRLVRL 337
+P + L++L YL+L + +P L+ LVRL
Sbjct: 122 IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRL 180
Query: 338 EELDLGSNNLSSL-PDSIGSLISLKKL--------IVETNDLEELPHTIGQCSSLRELRV 388
EEL+L N L + P S L SL+KL +E N ++L SL EL +
Sbjct: 181 EELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDL-------KSLEELNL 233
Query: 389 DYNRLKALP-EAVGKIHTLEVLSVRYN 414
+N L +LP + +H LE + + +N
Sbjct: 234 SHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 470 SIGNLEMLEELDISNNQIRVLP-DSFRMLSRLRVLRVQENPLEVPP 514
+ L L L++ +N++ +P +F LS+LR L ++ NP+E P
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 59/220 (26%)
Query: 246 NLQNKLMD--NIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHA----- 298
+LQ+ +D + LPD+ + + L +L L+ N + A+PA+I L+ L++L + A
Sbjct: 105 HLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELT 164
Query: 299 ----------------------------NRIIELPDSIGDLLSLVYLDLRGNQISALPVA 330
I LP SI +L +L L +R + +SAL A
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA 224
Query: 331 LSRLVRLEELDL-GSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVD 389
+ L +LEELDL G L + P G LK+LI++ CS+L L +D
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK------------DCSNLLTLPLD 272
Query: 390 YNRLKALPEAVGKIHTLEVLSVRYN-NIKQLPTTMSSLSS 428
+RL LE L +R N+ +LP+ ++ L +
Sbjct: 273 IHRLT----------QLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 17/216 (7%)
Query: 269 VSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALP 328
V+L+L + P LS L+ + A + ELPD+ L L L N + ALP
Sbjct: 84 VALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALP 143
Query: 329 VALSRLVRLEELDL-GSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELR 387
+++ L RL EL + L+ LP+ + S + + + + L +L+ LR
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDA-------SGEHQGL-------VNLQSLR 189
Query: 388 VDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDV-SFNELESVPESL 446
+++ +++LP ++ + L+ L +R + + L + L L ELD+ L + P
Sbjct: 190 LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF 249
Query: 447 CFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDI 482
L ++ I + ++L LP I L LE+LD+
Sbjct: 250 GGRAPLKRL-ILKDCSNLLTLPLDIHRLTQLEKLDL 284
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 13/166 (7%)
Query: 340 LDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA 399
L+L S L PD L L+ ++ L ELP T Q + L L + N L+ALP +
Sbjct: 86 LELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPAS 145
Query: 400 VGKIHTLEVLSVR-YNNIKQLPTTMSS---------LSSLRELDVSFNELESVPESLCFA 449
+ ++ L LS+R + +LP ++S L +L+ L + + + S+P S+
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 450 TTLVKMNIGNNFADLRALPRSIGNLEMLEELDISN-NQIRVLPDSF 494
L + I N + L AL +I +L LEELD+ +R P F
Sbjct: 206 QNLKSLKIRN--SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF 249
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 15/132 (11%)
Query: 263 GKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDSIGDLLS-LVYLDLR 320
G SS L+L N++ ++P L+ L KL L N+I LPD + D L+ L L L
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84
Query: 321 GNQISALPVA-LSRLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVETNDLEELPHTIG 378
N++ +LP +L +L+EL L +N L S+PD I L SL+K+ + TN +
Sbjct: 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD------- 137
Query: 379 QCSSLRELRVDY 390
CS R+DY
Sbjct: 138 -CSC---PRIDY 145
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 9/136 (6%)
Query: 339 ELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTI-GQCSSLRELRVDYNRLKALP 397
E+ S L+S+P I S S +L +E+N L+ LPH + + + L +L + N++++LP
Sbjct: 11 EIRCNSKGLTSVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP 68
Query: 398 EAV-GKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVPESLCF--ATTLV 453
+ V K+ L +L + N ++ LP L+ L+EL + N+L+SVP+ + F T+L
Sbjct: 69 DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI-FDRLTSLQ 127
Query: 454 KMNIGNNFADLRALPR 469
K+ + N D + PR
Sbjct: 128 KIWLHTNPWDC-SCPR 142
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 313 SLVYLDLRGNQISALPVA-LSRLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVETNDL 370
S L+L N++ +LP +L +L +L L N + SLPD + L L L + N L
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88
Query: 371 EELPHTI-GQCSSLRELRVDYNRLKALPEAV 400
+ LP+ + + + L+EL +D N+LK++P+ +
Sbjct: 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGI 119
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 22/170 (12%)
Query: 379 QCS-SLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSF 436
+CS S E+R + L ++P + T L + N ++ LP L+ L +L +S
Sbjct: 4 RCSCSGTEIRCNSKGLTSVPTGIPSSAT--RLELESNKLQSLPHGVFDKLTQLTKLSLSQ 61
Query: 437 NELESVPESLCF--ATTLVKMNIGNNFADLRALPRSIGN-LEMLEELDISNNQIRVLPDS 493
N+++S+P+ + F T L + + N L++LP + + L L+EL + NQ++ +PD
Sbjct: 62 NQIQSLPDGV-FDKLTKLTILYLHEN--KLQSLPNGVFDKLTQLKELALDTNQLKSVPDG 118
Query: 494 -FRMLSRLRVLRVQENPLEVP-PRNIVEMGAQAVVQYMADLVEKRDAKTQ 541
F L+ L+ + + NP + PR + Y++ + K K Q
Sbjct: 119 IFDRLTSLQKIWLHTNPWDCSCPR----------IDYLSRWLNKNSQKEQ 158
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 110/268 (41%), Gaps = 36/268 (13%)
Query: 261 SIGKLSSLVSLDLSENRIVAVPATIGGLS-SLKKLDLHANRIIELPD-------SIGDLL 312
+ G L SL+L+ N+I +PA G + ++ L N++ +P+ S+ +
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAI 407
Query: 313 SLVYLDLR---GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLIS-LKKLIVETN 368
Y ++ G L + + + ++L +N +S P + S S L + + N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGN 467
Query: 369 DLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTM--SSL 426
L E+P N LK E + L + +R+N + +L ++L
Sbjct: 468 XLTEIPK---------------NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512
Query: 427 SSLRELDVSFNELESVPESLCFATTLVKMNIGN-----NFADLRALPRSIGNLEMLEELD 481
L +D+S+N P ++TL I N LR P I L +L
Sbjct: 513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572
Query: 482 ISNNQIRVLPDSFRMLSRLRVLRVQENP 509
I +N IR + + ++ + VL +++NP
Sbjct: 573 IGSNDIRKVNE--KITPNISVLDIKDNP 598
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 82/214 (38%), Gaps = 46/214 (21%)
Query: 308 IGDLLSLVYLDLRGNQISALPV--ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV 365
+G+ + ++Y+ N + PV +L + +L L+ N L + GS I L L +
Sbjct: 303 VGEKIQIIYIGY--NNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNL 360
Query: 366 ETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMS- 424
N + E+P G +E LS +N +K +P
Sbjct: 361 AYNQITEIPANF----------------------CGFTEQVENLSFAHNKLKYIPNIFDA 398
Query: 425 -SLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDIS 483
S+S +D S+NE+ SV G NF L P N + +++S
Sbjct: 399 KSVSVXSAIDFSYNEIGSVD--------------GKNFDPLDPTPFKGIN---VSSINLS 441
Query: 484 NNQIRVLPDS-FRMLSRLRVLRVQENPLEVPPRN 516
NNQI P F S L + + N L P+N
Sbjct: 442 NNQISKFPKELFSTGSPLSSINLXGNXLTEIPKN 475
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 12/211 (5%)
Query: 242 TRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANR 300
T L+LQN D E D L L +L L N+I + L L+KL + N
Sbjct: 56 TTLLDLQNN--DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 301 IIELPDSIGDLLSLVYLDLRGNQISALPVA-LSRLVRLEELDLGSNNLSSLPDSIGSLIS 359
++E+P ++ SLV L + N+I +P S L + +++G N L + G+
Sbjct: 114 LVEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171
Query: 360 LK--KLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALP-EAVGKIHTLEVLSVRYNNI 416
LK L + L +P + + +L EL +D+N+++A+ E + + L L + +N I
Sbjct: 172 LKLNYLRISEAKLTGIPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 417 KQLPT-TMSSLSSLRELDVSFNELESVPESL 446
+ + ++S L +LREL + N+L VP L
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGL 260
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 25/168 (14%)
Query: 266 SSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDSIG--DLLSLVYLDLRGN 322
SSLV L + +NRI VP GL ++ +++ N + G D L L YL +
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182
Query: 323 QISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKL-----------IVETNDLE 371
+++ +P L L EL L N + ++ + L+ KL ++E L
Sbjct: 183 KLTGIPKDLPE--TLNELHLDHNKIQAI--ELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238
Query: 372 ELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQL 419
LP +LREL +D N+L +P + + L+V+ + NNI ++
Sbjct: 239 FLP-------TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 78/156 (50%), Gaps = 17/156 (10%)
Query: 288 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 347
++ +L L+ + LPD++ +++ L++ N + +LP LE LD N L
Sbjct: 58 INQFSELQLNRLNLSSLPDNLPPQITV--LEITQNALISLP---ELPASLEYLDACDNRL 112
Query: 348 SSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLE 407
S+LP+ SL K L V+ N L LP L + D N+L LPE +LE
Sbjct: 113 STLPELPASL---KHLDVDNNQLTXLPELPAL---LEYINADNNQLTXLPELPT---SLE 163
Query: 408 VLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP 443
VLSVR N + LP SL + LDVS N LES+P
Sbjct: 164 VLSVRNNQLTFLPELPESLEA---LDVSTNLLESLP 196
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 77/186 (41%), Gaps = 48/186 (25%)
Query: 336 RLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKA 395
+ EL L NLSSLPD++ I++ L + N L +
Sbjct: 60 QFSELQLNRLNLSSLPDNLPPQITV-------------------------LEITQNALIS 94
Query: 396 LPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKM 455
LPE + L+ R + + +LP +SL+ LDV N+L +PE L +
Sbjct: 95 LPELPASLEYLDACDNRLSTLPELP------ASLKHLDVDNNQLTXLPE---LPALLEYI 145
Query: 456 NIGNN-FADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLE--- 511
N NN L LP S LE L + NNQ+ LP+ + L L V N LE
Sbjct: 146 NADNNQLTXLPELPTS------LEVLSVRNNQLTFLPE---LPESLEALDVSTNLLESLP 196
Query: 512 -VPPRN 516
VP RN
Sbjct: 197 AVPVRN 202
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 118/244 (48%), Gaps = 34/244 (13%)
Query: 288 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 347
L S+ KL + ++ + I L +L YL+L GNQI+ + LS LV+L L +G+N +
Sbjct: 43 LESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKI 100
Query: 348 SSLPDSIGSLISLKKLIVETNDLEELP----------------HTIGQCS------SLRE 385
+ + ++ +L +L++L + +++ ++ H + S L
Sbjct: 101 TDIS-ALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNY 159
Query: 386 LRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPES 445
L V +++K + + + L LS+ YN I+ + + ++SL+SL N++ +
Sbjct: 160 LTVTESKVKDV-TPIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDITP- 216
Query: 446 LCFATTLVKMNIGNN-FADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLR 504
+ T L + IGNN DL L NL L L+I NQI + ++ + L++L+ L
Sbjct: 217 VANXTRLNSLKIGNNKITDLSPL----ANLSQLTWLEIGTNQISDI-NAVKDLTKLKXLN 271
Query: 505 VQEN 508
V N
Sbjct: 272 VGSN 275
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 12/193 (6%)
Query: 264 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRI-IELPDSIGDL--LSLVYLDLR 320
KL SL L + N+ + + L SL+ LDL N + + S D SL YLDL
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 321 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV----ETNDLEELPHT 376
N + + L +LE LD +NL + + +SL+ LI T+
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 377 IGQCSSLRELRVDYNRLK--ALPEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELD 433
SSL L++ N + LP+ ++ L L + ++QL PT +SLSSL+ L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 434 VSFNELESVPESL 446
++ N+L+SVP+ +
Sbjct: 501 MASNQLKSVPDGI 513
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 257 WLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPDSIGDLLS 313
+LPD +L +L LDLS+ ++ + P LSSL+ L++ +N++ +PD I D L+
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 86/192 (44%), Gaps = 28/192 (14%)
Query: 346 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCS--SLRELRV-DYNRLKALPEAVGK 402
N +PD++ S K L + N L L G S S EL+V D +R + G
Sbjct: 18 NFYKIPDNLP--FSTKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGA 71
Query: 403 IHTLEVLS---VRYNNIKQLP-TTMSSLSSLREL---DVSFNELESVPESLCFATTLVKM 455
+L LS + N I+ L S LSSL++L + + LE+ P + TL ++
Sbjct: 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKEL 129
Query: 456 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLR-----VQENPL 510
N+ +N LP NL LE LD+S+N+I+ + + LRVL L
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQMPLLNLSLDL 184
Query: 511 EVPPRNIVEMGA 522
+ P N ++ GA
Sbjct: 185 SLNPMNFIQPGA 196
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 211 TLKSGAVSGQDG-EKLSLIK--LASL--IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKL 265
+L GA SG +KL ++ LASL + K ++LN+ + L+ + + LP+ L
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNL 148
Query: 266 SSLVSLDLSENRIVAVPAT 284
++L LDLS N+I ++ T
Sbjct: 149 TNLEHLDLSSNKIQSIYCT 167
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 115/252 (45%), Gaps = 48/252 (19%)
Query: 229 KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGG 287
K+AS +EV+ K RDL LP + K +++ L LSEN + AT+
Sbjct: 8 KVASHLEVNCDK--RDLTA----------LPPDLPKDTTI--LHLSENLLYTFSLATLMP 53
Query: 288 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 347
+ L +L+L + +L G L L LDL NQ+ +LP+ L L LD+ N L
Sbjct: 54 YTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 348 SSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA-VGKIHTL 406
+SLP +G+L L + L+EL + N LK LP + L
Sbjct: 113 TSLP--LGALRGLGE--------------------LQELYLKGNELKTLPPGLLTPTPKL 150
Query: 407 EVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLR 465
E LS+ NN+ +LP ++ L +L L + N L ++P+ F + L+ FA L
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLLP------FAFLH 203
Query: 466 ALPRSIGNLEML 477
P + N E+L
Sbjct: 204 GNPW-LCNCEIL 214
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 15/195 (7%)
Query: 331 LSRLVRLEELDLGSNNLSSLPDSI---GSLISLKKLIVETNDLEEL-PHTIGQCSSLREL 386
+S++ E++ +L++LP + +++ L + ++ T L L P+T L +L
Sbjct: 6 VSKVASHLEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-----RLTQL 60
Query: 387 RVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP-ES 445
+D L L + G + L L + +N ++ LP +L +L LDVSFN L S+P +
Sbjct: 61 NLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 446 LCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVL 503
L L ++ + N +L+ LP + LE+L ++NN + LP L L L
Sbjct: 120 LRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 504 RVQENPLEVPPRNIV 518
+QEN L P+
Sbjct: 178 LLQENSLYTIPKGFF 192
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 48/252 (19%)
Query: 229 KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGG 287
K+AS +EV+ K N+ LP + K +++ L LSEN + AT+
Sbjct: 8 KVASHLEVNCDK------------RNLTALPPDLPKDTTI--LHLSENLLYTFSLATLMP 53
Query: 288 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 347
+ L +L+L + +L G L L LDL NQ+ +LP+ L L LD+ N L
Sbjct: 54 YTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 348 SSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA-VGKIHTL 406
+SLP +G+L L + L+EL + N LK LP + L
Sbjct: 113 TSLP--LGALRGLGE--------------------LQELYLKGNELKTLPPGLLTPTPKL 150
Query: 407 EVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLR 465
E LS+ NN+ +LP ++ L +L L + N L ++P+ F + L+ FA L
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLLP------FAFLH 203
Query: 466 ALPRSIGNLEML 477
P + N E+L
Sbjct: 204 GNPW-LCNCEIL 214
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 15/195 (7%)
Query: 331 LSRLVRLEELDLGSNNLSSLPDSI---GSLISLKKLIVETNDLEEL-PHTIGQCSSLREL 386
+S++ E++ NL++LP + +++ L + ++ T L L P+T L +L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-----RLTQL 60
Query: 387 RVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP-ES 445
+D L L + G + L L + +N ++ LP +L +L LDVSFN L S+P +
Sbjct: 61 NLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 446 LCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVL 503
L L ++ + N +L+ LP + LE+L ++NN + LP L L L
Sbjct: 120 LRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 504 RVQENPLEVPPRNIV 518
+QEN L P+
Sbjct: 178 LLQENSLYTIPKGFF 192
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 105/233 (45%), Gaps = 30/233 (12%)
Query: 263 GKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRI-IELPDSIGDL--LSLVYLD 318
G SS L+L N++ ++P L+ L KL L +N + + S D SL YLD
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84
Query: 319 LRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIG 378
L N + + L +LE LD +NL + + +SL+ LI ++ HT
Sbjct: 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIY-----LDISHT-- 136
Query: 379 QCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQ--LPTTMSSLSSLRELDVSF 436
RV +N + + +LEVL + N+ ++ LP + L +L LD+S
Sbjct: 137 ------HTRVAFNGI------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 437 NELESV-PESLCFATTLVKMNIG-NNFADLRALPRSIGNLEMLEELDISNNQI 487
+LE + P + ++L +N+ NNF L P L L+ LD S N I
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHI 235
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 257 WLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIEL 304
+LPD +L +L LDLS+ ++ + P LSSL+ L++ N L
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 48/252 (19%)
Query: 229 KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGG 287
K+AS +EV+ K N+ LP + K +++ L LSEN + AT+
Sbjct: 8 KVASHLEVNCDK------------RNLTALPPDLPKDTTI--LHLSENLLYTFSLATLMP 53
Query: 288 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 347
+ L +L+L + +L G L L LDL NQ+ +LP+ L L LD+ N L
Sbjct: 54 YTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 348 SSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA-VGKIHTL 406
+SLP +G+L L + L+EL + N LK LP + L
Sbjct: 113 TSLP--LGALRGLGE--------------------LQELYLKGNELKTLPPGLLTPTPKL 150
Query: 407 EVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLR 465
E LS+ NN+ +LP ++ L +L L + N L ++P+ F + L+ FA L
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLLP------FAFLH 203
Query: 466 ALPRSIGNLEML 477
P + N E+L
Sbjct: 204 GNPW-LCNCEIL 214
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 15/195 (7%)
Query: 331 LSRLVRLEELDLGSNNLSSLPDSI---GSLISLKKLIVETNDLEEL-PHTIGQCSSLREL 386
+S++ E++ NL++LP + +++ L + ++ T L L P+T L +L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-----RLTQL 60
Query: 387 RVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP-ES 445
+D L L + G + L L + +N ++ LP +L +L LDVSFN L S+P +
Sbjct: 61 NLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 446 LCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVL 503
L L ++ + N +L+ LP + LE+L ++NN + LP L L L
Sbjct: 120 LRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 504 RVQENPLEVPPRNIV 518
+QEN L P+
Sbjct: 178 LLQENSLYTIPKGFF 192
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 48/252 (19%)
Query: 229 KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGG 287
K+AS +EV+ K N+ LP + K +++ L LSEN + AT+
Sbjct: 8 KVASHLEVNCDK------------RNLTALPPDLPKDTTI--LHLSENLLYTFSLATLMP 53
Query: 288 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 347
+ L +L+L + +L G L L LDL NQ+ +LP+ L L LD+ N L
Sbjct: 54 YTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 348 SSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA-VGKIHTL 406
+SLP +G+L L + L+EL + N LK LP + L
Sbjct: 113 TSLP--LGALRGLGE--------------------LQELYLKGNELKTLPPGLLTPTPKL 150
Query: 407 EVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLR 465
E LS+ NN+ +LP ++ L +L L + N L ++P+ F + L+ FA L
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLLP------FAFLH 203
Query: 466 ALPRSIGNLEML 477
P + N E+L
Sbjct: 204 GNPW-LCNCEIL 214
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 15/195 (7%)
Query: 331 LSRLVRLEELDLGSNNLSSLPDSI---GSLISLKKLIVETNDLEEL-PHTIGQCSSLREL 386
+S++ E++ NL++LP + +++ L + ++ T L L P+T L +L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-----RLTQL 60
Query: 387 RVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP-ES 445
+D L L + G + L L + +N ++ LP +L +L LDVSFN L S+P +
Sbjct: 61 NLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 446 LCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVL 503
L L ++ + N +L+ LP + LE+L ++NN + LP L L L
Sbjct: 120 LRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 504 RVQENPLEVPPRNIV 518
+QEN L P+
Sbjct: 178 LLQENSLYTIPKGFF 192
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 48/252 (19%)
Query: 229 KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGG 287
K+AS +EV+ K N+ LP + K +++ L LSEN + AT+
Sbjct: 9 KVASHLEVNCDK------------RNLTALPPDLPKDTTI--LHLSENLLYTFSLATLMP 54
Query: 288 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 347
+ L +L+L + +L G L L LDL NQ+ +LP+ L L LD+ N L
Sbjct: 55 YTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 113
Query: 348 SSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA-VGKIHTL 406
+SLP +G+L L + L+EL + N LK LP + L
Sbjct: 114 TSLP--LGALRGLGE--------------------LQELYLKGNELKTLPPGLLTPTPKL 151
Query: 407 EVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLR 465
E LS+ NN+ +LP ++ L +L L + N L ++P+ F + L+ FA L
Sbjct: 152 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLLP------FAFLH 204
Query: 466 ALPRSIGNLEML 477
P + N E+L
Sbjct: 205 GNPW-LCNCEIL 215
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 15/195 (7%)
Query: 331 LSRLVRLEELDLGSNNLSSLPDSI---GSLISLKKLIVETNDLEEL-PHTIGQCSSLREL 386
+S++ E++ NL++LP + +++ L + ++ T L L P+T L +L
Sbjct: 7 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-----RLTQL 61
Query: 387 RVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP-ES 445
+D L L + G + L L + +N ++ LP +L +L LDVSFN L S+P +
Sbjct: 62 NLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 120
Query: 446 LCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVL 503
L L ++ + N +L+ LP + LE+L ++NN + LP L L L
Sbjct: 121 LRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 178
Query: 504 RVQENPLEVPPRNIV 518
+QEN L P+
Sbjct: 179 LLQENSLYTIPKGFF 193
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 14/223 (6%)
Query: 294 LDLHANRIIELPDS-IGDLLSLVYLDLRGNQISAL-PVALSRLVRLEELDLGSNNLSSLP 351
LDL N+I E+ D +L +L L L N+IS + P A + LV+LE L L N L LP
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 352 DSIGSLISLKKLIVETNDLEELPHTI-GQCSSLRELRVDYNRLKALPEAVGKIHTLEVLS 410
+ + +L++L V N++ ++ ++ + + + + N LK+ G ++ LS
Sbjct: 117 EKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 411 ---VRYNNIKQLPTTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRA 466
+ NI +P + SL EL + N++ V SL L K+ G +F + A
Sbjct: 175 YIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKL--GLSFNSISA 230
Query: 467 LPR-SIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQEN 508
+ S+ N L EL ++NN++ +P ++V+ + N
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 273
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 28/159 (17%)
Query: 265 LSSLVSLDLSENRIVAVPATIGGLSSLKKLD---LHANRIIELPDSIGDLLSLVYLDLRG 321
L+ ++ ++L N + + G +KKL + I +P + L+ ++LD G
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD--G 201
Query: 322 NQISALPVA-LSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 380
N+I+ + A L L L +L L N++S+ V+ L PH
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISA---------------VDNGSLANTPH----- 241
Query: 381 SSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQL 419
LREL ++ N+L +P + ++V+ + NNI +
Sbjct: 242 --LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 14/223 (6%)
Query: 294 LDLHANRIIELPDS-IGDLLSLVYLDLRGNQISAL-PVALSRLVRLEELDLGSNNLSSLP 351
LDL N+I E+ D +L +L L L N+IS + P A + LV+LE L L N L LP
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 352 DSIGSLISLKKLIVETNDLEELPHTI-GQCSSLRELRVDYNRLKALPEAVGKIHTLEVLS 410
+ + +L++L V N++ ++ ++ + + + + N LK+ G ++ LS
Sbjct: 117 EKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 411 ---VRYNNIKQLPTTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRA 466
+ NI +P + SL EL + N++ V SL L K+ G +F + A
Sbjct: 175 YIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKL--GLSFNSISA 230
Query: 467 LPR-SIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQEN 508
+ S+ N L EL ++NN++ +P ++V+ + N
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 273
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 28/159 (17%)
Query: 265 LSSLVSLDLSENRIVAVPATIGGLSSLKKLD---LHANRIIELPDSIGDLLSLVYLDLRG 321
L+ ++ ++L N + + G +KKL + I +P + L+ ++LD G
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD--G 201
Query: 322 NQISALPVA-LSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 380
N+I+ + A L L L +L L N++S+ V+ L PH
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISA---------------VDNGSLANTPH----- 241
Query: 381 SSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQL 419
LREL ++ N+L +P + ++V+ + NNI +
Sbjct: 242 --LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 115/252 (45%), Gaps = 48/252 (19%)
Query: 229 KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGG 287
K+AS +EV+ K RDL LP + K +++ L LSEN + AT+
Sbjct: 8 KVASHLEVNCDK--RDLTA----------LPPDLPKDTTI--LHLSENLLYTFSLATLMP 53
Query: 288 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 347
+ L +L+L + +L G L L LDL NQ+ +LP+ L L LD+ N L
Sbjct: 54 YTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 348 SSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA-VGKIHTL 406
+SLP +G+L L + L+EL + N LK LP + L
Sbjct: 113 TSLP--LGALRGLGE--------------------LQELYLKGNELKTLPPGLLTPTPKL 150
Query: 407 EVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLR 465
E LS+ N++ +LP ++ L +L L + N L ++P+ F + L+ FA L
Sbjct: 151 EKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLLP------FAFLH 203
Query: 466 ALPRSIGNLEML 477
P + N E+L
Sbjct: 204 GNPW-LCNCEIL 214
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 15/195 (7%)
Query: 331 LSRLVRLEELDLGSNNLSSLPDSI---GSLISLKKLIVETNDLEEL-PHTIGQCSSLREL 386
+S++ E++ +L++LP + +++ L + ++ T L L P+T L +L
Sbjct: 6 VSKVASHLEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-----RLTQL 60
Query: 387 RVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP-ES 445
+D L L + G + L L + +N ++ LP +L +L LDVSFN L S+P +
Sbjct: 61 NLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 446 LCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVL 503
L L ++ + N +L+ LP + LE+L ++NN + LP L L L
Sbjct: 120 LRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTL 177
Query: 504 RVQENPLEVPPRNIV 518
+QEN L P+
Sbjct: 178 LLQENSLYTIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 381 SSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELE 440
+ L +L +D L L + G + L L + +N ++ LP +L +L LDVSFN L
Sbjct: 55 TRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 441 SVP-ESLCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRML 497
S+P +L L ++ + N +L+ LP + LE+L ++NNQ+ LP L
Sbjct: 114 SLPLGALRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 498 SRLRVLRVQENPLEVPPRNIV 518
L L +QEN L P+
Sbjct: 172 ENLDTLLLQENSLYTIPKGFF 192
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 94/210 (44%), Gaps = 34/210 (16%)
Query: 271 LDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV 329
L LSEN + AT+ + L +L+L + +L G L L LDL NQ+ +LP+
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 330 ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVD 389
L L LD+ N L+SLP +G+L L L+EL +
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLP--LGALRGL--------------------GELQELYLK 132
Query: 390 YNRLKALPEA-VGKIHTLEVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPESLC 447
N LK LP + LE LS+ N + +LP ++ L +L L + N L ++P+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF- 191
Query: 448 FATTLVKMNIGNNFADLRALPRSIGNLEML 477
F + L+ FA L P + N E+L
Sbjct: 192 FGSHLLP------FAFLHGNPW-LCNCEIL 214
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 381 SSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELE 440
+ L +L +D L L + G + L L + +N ++ LP +L +L LDVSFN L
Sbjct: 55 TRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 441 SVP-ESLCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRML 497
S+P +L L ++ + N +L+ LP + LE+L ++NNQ+ LP L
Sbjct: 114 SLPLGALRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 498 SRLRVLRVQENPLEVPPRNIV 518
L L +QEN L P+
Sbjct: 172 ENLDTLLLQENSLYTIPKGFF 192
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 94/210 (44%), Gaps = 34/210 (16%)
Query: 271 LDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV 329
L LSEN + AT+ + L +L+L + +L G L L LDL NQ+ +LP+
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 330 ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVD 389
L L LD+ N L+SLP +G+L L L+EL +
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLP--LGALRGL--------------------GELQELYLK 132
Query: 390 YNRLKALPEA-VGKIHTLEVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPESLC 447
N LK LP + LE LS+ N + +LP ++ L +L L + N L ++P+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF- 191
Query: 448 FATTLVKMNIGNNFADLRALPRSIGNLEML 477
F + L+ FA L P + N E+L
Sbjct: 192 FGSHLLP------FAFLHGNPW-LCNCEIL 214
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 117/268 (43%), Gaps = 53/268 (19%)
Query: 289 SSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLE---------E 339
+SLK L +H + D G S +Y I V+ +R+V +
Sbjct: 273 TSLKALSIHQ----VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328
Query: 340 LDLGSNNLS-SLPDSIGSLISLKKLIVETNDLEEL---PHTIGQCSSLRELRVDYNRLKA 395
LD +N L+ ++ ++ G L L+ LI++ N L+EL Q SL++L + N
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN---- 384
Query: 396 LPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKM 455
SV Y+ K S SL L++S N L C + +
Sbjct: 385 --------------SVSYDEKK---GDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVL 426
Query: 456 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVP- 513
++ +N ++++P+ + LE L+EL++++NQ++ +PD F L+ L+ + + NP +
Sbjct: 427 DLHSN--KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484
Query: 514 PRNIVEMGAQAVVQYMADLVEKRDAKTQ 541
PR + Y++ + K K Q
Sbjct: 485 PR----------IDYLSRWLNKNSQKEQ 502
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 10/111 (9%)
Query: 264 KLSSLVSLDLSENRIVAVPATIGGLS---SLKKLDLHANRIIELPDSIGDLL--SLVYLD 318
++ SL LD+S+N V+ G S SL L++ +N L D+I L + LD
Sbjct: 372 QMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNI---LTDTIFRCLPPRIKVLD 427
Query: 319 LRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGS-LISLKKLIVETN 368
L N+I ++P + +L L+EL++ SN L S+PD I L SL+K+ + TN
Sbjct: 428 LHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 9/67 (13%)
Query: 381 SSLRELRVDYNRLKALPEAVGKIHT-LEVLSVRYNNIKQL---PTTMSSLSSLRELDVSF 436
S LR L + +NR++ L +V K + LE L + +N + ++ PT +L+ LD+SF
Sbjct: 45 SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTV-----NLKHLDLSF 99
Query: 437 NELESVP 443
N +++P
Sbjct: 100 NAFDALP 106
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 267 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLDLRGNQIS 325
S +++ E + +VPA I ++ + L L+ N+I +L P L L YL+L NQ++
Sbjct: 20 SGTTVNCQERSLASVPAGIP--TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLT 77
Query: 326 ALPVAL-SRLVRLEELDLGSNNLSSLPDSIGSLISLKKL 363
ALPV + +L +L L L N L S+P +G +LK L
Sbjct: 78 ALPVGVFDKLTKLTHLALHINQLKSIP--MGVFDNLKSL 114
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 147/350 (42%), Gaps = 49/350 (14%)
Query: 207 IHDSTLKS---GAVSGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIG 263
+ +ST +S G D E +S L L E+S LNLQ +I +
Sbjct: 219 LQNSTTQSLWLGTFEDIDDEDISSAMLKGLCEMS----VESLNLQEHRFSDIS--STTFQ 272
Query: 264 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGN 322
+ L LDL+ + +P+ + GL+ LKKL L N +L S + SL +L +RGN
Sbjct: 273 CFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN 332
Query: 323 --QISALPVALSRLVRLEELDLGSNNLSS---LPDSIGSLISLKKLIVETND-LEELPHT 376
++ L +L L+ LDL N++ + + +L L+ L + N+ L
Sbjct: 333 VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQA 392
Query: 377 IGQCSSLRELRVDYNRLK--ALPEAVGKIHTLEVLSVRYNNIKQLPTT----MSSLSSLR 430
+C L L + + RL A +H L+VL++ Y L T+ ++ L LR
Sbjct: 393 FKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTY---CFLDTSNQHLLAGLPVLR 449
Query: 431 ELDVSFNELESVPESLCFATTLVKMNIGNNFADLRAL-----------PRSIGNLEMLEE 479
L++ N + T+ K N+ L L ++ +L +
Sbjct: 450 HLNLKGNHFQD--------GTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSH 501
Query: 480 LDISNNQIRVLPDSFRMLSRLR--VLRVQENPLE-VPPRNIVEMGAQAVV 526
+D+S+N + DS LS L+ L + N + + PR + + Q+ +
Sbjct: 502 VDLSHNSLTC--DSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTI 549
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 381 SSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELE 440
+ L +L +D L L + G + L L + +N ++ LP +L +L LDVSFN L
Sbjct: 55 TRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 441 SVP-ESLCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRML 497
S+P +L L ++ + N +L+ LP + LE+L ++NNQ+ LP L
Sbjct: 114 SLPLGALRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 498 SRLRVLRVQENPLEVPPRNIV 518
L L +QEN L P+
Sbjct: 172 ENLDTLLLQENSLYTIPKGFF 192
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 34/210 (16%)
Query: 271 LDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV 329
L LSEN + AT+ + L +L+L + +L G L L LDL NQ+ +LP+
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 330 ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVD 389
L L LD+ N L+SLP +G+L L + L+EL +
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLP--LGALRGLGE--------------------LQELYLK 132
Query: 390 YNRLKALPEA-VGKIHTLEVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPESLC 447
N LK LP + LE LS+ N + +LP ++ L +L L + N L ++P+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF- 191
Query: 448 FATTLVKMNIGNNFADLRALPRSIGNLEML 477
F + L+ FA L P + N E+L
Sbjct: 192 FGSHLLP------FAFLHGNPW-LCNCEIL 214
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 15/187 (8%)
Query: 339 ELDLGSNNLSSLPDSI---GSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLK 394
E++ L++LP + +++ L + ++ T L L P+T L +L +D L
Sbjct: 14 EVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-----RLTQLNLDRCELT 68
Query: 395 ALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP-ESLCFATTLV 453
L + G + L L + +N ++ LP +L +L LDVSFN L S+P +L L
Sbjct: 69 KL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 454 KMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLE 511
++ + N +L+ LP + LE+L ++NNQ+ LP L L L +QEN L
Sbjct: 128 ELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 512 VPPRNIV 518
P+
Sbjct: 186 TIPKGFF 192
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 34/210 (16%)
Query: 271 LDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV 329
L LSEN + AT+ + L +L+L + +L G L L LDL NQ+ +LP+
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 330 ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVD 389
L L LD+ N L+SLP +G+L L + L+EL +
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLP--LGALRGLGE--------------------LQELYLK 132
Query: 390 YNRLKALPEA-VGKIHTLEVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPESLC 447
N LK LP + LE LS+ N + +LP ++ L +L L + N L ++P+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF- 191
Query: 448 FATTLVKMNIGNNFADLRALPRSIGNLEML 477
F + L+ FA L P + N E+L
Sbjct: 192 FGSHLLP------FAFLHGNPW-LCNCEIL 214
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 118/249 (47%), Gaps = 34/249 (13%)
Query: 260 DSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 319
D + L++L ++ S N++ + + L+ L + ++ N+I ++ + +L +L L L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 114
Query: 320 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQ 379
NQI+ + L L L L+L SN +S + ++ L SL++L +N + +L +
Sbjct: 115 FNNQITDID-PLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDL-KPLAN 171
Query: 380 CSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNEL 439
++L L + N++ + + K+ LE L N I + T + L++L EL ++ N+L
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 440 ESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSR 499
+ + ++ +L L +LD++NNQI L L++
Sbjct: 230 KDI--------------------------GTLASLTNLTDLDLANNQISNLA-PLSGLTK 262
Query: 500 LRVLRVQEN 508
L L++ N
Sbjct: 263 LTELKLGAN 271
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 261 SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 320
++ L++L LDL+ N+I + A + GL+ L +L L AN+I + G L +L L+L
Sbjct: 234 TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LTALTNLELN 291
Query: 321 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 380
NQ+ + +S L L L L NN+S + + SL L++L N + ++ ++
Sbjct: 292 ENQLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDV-SSLANL 348
Query: 381 SSLRELRVDYNRLKAL 396
+++ L +N++ L
Sbjct: 349 TNINWLSAGHNQISDL 364
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 118/249 (47%), Gaps = 34/249 (13%)
Query: 260 DSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 319
D + L++L ++ S N++ + + L+ L + ++ N+I ++ + +L +L L L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 114
Query: 320 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQ 379
NQI+ + L L L L+L SN +S + ++ L SL++L +N + +L +
Sbjct: 115 FNNQITDID-PLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDL-KPLAN 171
Query: 380 CSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNEL 439
++L L + N++ + + K+ LE L N I + T + L++L EL ++ N+L
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 440 ESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSR 499
+ + ++ +L L +LD++NNQI L L++
Sbjct: 230 KDI--------------------------GTLASLTNLTDLDLANNQISNLA-PLSGLTK 262
Query: 500 LRVLRVQEN 508
L L++ N
Sbjct: 263 LTELKLGAN 271
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 261 SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 320
++ L++L LDL+ N+I + A + GL+ L +L L AN+I + G L +L L+L
Sbjct: 234 TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LTALTNLELN 291
Query: 321 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 380
NQ+ + +S L L L L NN+S + + SL L++L N + ++ ++
Sbjct: 292 ENQLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFSNNKVSDV-SSLANL 348
Query: 381 SSLRELRVDYNRLKAL 396
+++ L +N++ L
Sbjct: 349 TNINWLSAGHNQISDL 364
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 118/249 (47%), Gaps = 34/249 (13%)
Query: 260 DSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 319
D + L++L ++ S N++ + + L+ L + ++ N+I ++ + +L +L L L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 114
Query: 320 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQ 379
NQI+ + L L L L+L SN +S + ++ L SL++L +N + +L +
Sbjct: 115 FNNQITDID-PLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVTDL-KPLAN 171
Query: 380 CSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNEL 439
++L L + N++ + + K+ LE L N I + T + L++L EL ++ N+L
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 440 ESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSR 499
+ + ++ +L L +LD++NNQI L L++
Sbjct: 230 KDI--------------------------GTLASLTNLTDLDLANNQISNLA-PLSGLTK 262
Query: 500 LRVLRVQEN 508
L L++ N
Sbjct: 263 LTELKLGAN 271
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 261 SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 320
++ L++L LDL+ N+I + A + GL+ L +L L AN+I + G L +L L+L
Sbjct: 234 TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LTALTNLELN 291
Query: 321 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 380
NQ+ + +S L L L L NN+S + + SL L++L N + ++ ++
Sbjct: 292 ENQLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDV-SSLANL 348
Query: 381 SSLRELRVDYNRLKAL 396
+++ L +N++ L
Sbjct: 349 TNINWLSAGHNQISDL 364
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 267 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLS-LVYLDLRGNQIS 325
S ++D S + +VP I ++ + L L+ NRI +L + D L+ L LDL NQ++
Sbjct: 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 326 ALPVAL-SRLVRLEELDLGSNNLSSLPDSIGSLISLKKL 363
LP + +L +L +L L N L S+P G+ +L+ L
Sbjct: 68 VLPAGVFDKLTQLTQLSLNDNQLKSIPR--GAFDNLRSL 104
Score = 36.6 bits (83), Expect = 0.037, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 432 LDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLP 491
+D S L SVP + TT V N L P L L LD+ NNQ+ VLP
Sbjct: 14 VDCSGKSLASVPTGIP-TTTQVLYLYDNRITKLE--PGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 492 DS-FRMLSRLRVLRVQENPLEVPPR 515
F L++L L + +N L+ PR
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSIPR 95
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 259 PDSIGKLSSLVSLDLSENRIVAVPATI-GGLSSLKKLDLHANRIIELP-DSIGDLLSLVY 316
P +L+ L LDL N++ +PA + L+ L +L L+ N++ +P + +L SL +
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTH 106
Query: 317 LDLRGN 322
+ L N
Sbjct: 107 IWLLNN 112
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 419 LPTTMSSLSSLRELDVSFNELESVPESLCFA-TTLVKMNIGNNFADLRAL-PRSIGNLEM 476
L + S + L +L ++ NE+ + ++ + T L+K+N+ NF L ++ R NL+
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF--LGSIDSRMFENLDK 348
Query: 477 LEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRNIVE 519
LE LD+S N IR L D SF L L+ L + N L+ P I +
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 25/138 (18%)
Query: 266 SSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQ 323
S + + DLS+++I A+ + + L++L L N I ++ D + L L+ L+L N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 324 ISALPV-ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSS 382
+ ++ L +LE LDL N++ +L D S + L +
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQ--SFLGLP--------------------N 372
Query: 383 LRELRVDYNRLKALPEAV 400
L+EL +D N+LK++P+ +
Sbjct: 373 LKELALDTNQLKSVPDGI 390
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 259 PDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVY 316
P L++L L L +N + A+P T L +L L LH NRI +P+ + L SL
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 317 LDLRGNQISAL-PVALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETN 368
L L N+++ + P A L RL L L +NNLS+LP +++ L +L+ L + N
Sbjct: 181 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 259 PDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVY 316
P + L L +L L + + P GL++L+ L L N + LP D+ DL +L +
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 317 LDLRGNQISALP-VALSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETNDLEELP 374
L L GN+IS++P A L L+ L L N ++ + P + L L L + N+L LP
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 375 -HTIGQCSSLRELRVDYN 391
+ +L+ LR++ N
Sbjct: 217 TEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 259 PDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVY 316
P L++L L L +N + A+P T L +L L LH NRI +P+ + L SL
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 317 LDLRGNQISAL-PVALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETN 368
L L N+++ + P A L RL L L +NNLS+LP +++ L +L+ L + N
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 259 PDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVY 316
P + L L +L L + + P GL++L+ L L N + LP D+ DL +L +
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 317 LDLRGNQISALP-VALSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETNDLEELP 374
L L GN+IS++P A L L+ L L N ++ + P + L L L + N+L LP
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 375 -HTIGQCSSLRELRVDYN 391
+ +L+ LR++ N
Sbjct: 218 TEALAPLRALQYLRLNDN 235
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 31/213 (14%)
Query: 258 LPDSIGKLSSLVSLDLS--ENRIVAVPATIGGLSSLKKLDL-HANRIIELPDSIGDLLSL 314
+P S+ L L L + N + +P I L+ L L + H N +PD + + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 315 VYLDLRGNQISA-LPVALSRLVRLEELDLGSNNLS-SLPDSIGSLISL-KKLIVETNDLE 371
V LD N +S LP ++S L L + N +S ++PDS GS L + + N L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 372 -ELPHTI----------------GQCSSL-------RELRVDYNRLKALPEAVGKIHTLE 407
++P T G S L +++ + N L VG L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 408 VLSVRYNNI-KQLPTTMSSLSSLRELDVSFNEL 439
L +R N I LP ++ L L L+VSFN L
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 16/187 (8%)
Query: 258 LPDSIGKLSSLVSLDLSENRIVA-VPATIGGLSSLKKLDLHANRII-ELPDSIGDLLSLV 315
+PD + ++ +LV+LD S N + +P +I L +L + NRI +PDS G L
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176
Query: 316 Y-LDLRGNQISA-LPVALSRLVRLEELDLGSNNLSSLPDS---IGSLISLKKLIVETNDL 370
+ + N+++ +P + L L +DL N L D+ GS + +K+ + N L
Sbjct: 177 TSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG--DASVLFGSDKNTQKIHLAKNSL 233
Query: 371 EELPHTIGQCSSLRELRVDYNRLKA-LPEAVGKIHTLEVLSVRYNNI-KQLPTTMSSLSS 428
+G +L L + NR+ LP+ + ++ L L+V +NN+ ++P +
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG----GN 289
Query: 429 LRELDVS 435
L+ DVS
Sbjct: 290 LQRFDVS 296
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 30/231 (12%)
Query: 264 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRI-IELPDSIGDL--LSLVYLDLR 320
KL SL L + N+ + + L SL+ LDL N + + S D +SL YLDL
Sbjct: 347 KLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405
Query: 321 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 380
N + + L +LE LD +NL + + +SL+ LI ++ HT
Sbjct: 406 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIY-----LDISHT---- 455
Query: 381 SSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQ--LPTTMSSLSSLRELDVSFNE 438
RV +N + + +LEVL + N+ ++ LP + L +L LD+S +
Sbjct: 456 ----HTRVAFNGI------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 505
Query: 439 LESV-PESLCFATTLVKMNIG-NNFADLRALPRSIGNLEMLEELDISNNQI 487
LE + P + ++L +N+ NNF L P L L+ LD S N I
Sbjct: 506 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHI 554
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 86/192 (44%), Gaps = 28/192 (14%)
Query: 346 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCS--SLRELRV-DYNRLKALPEAVGK 402
N +PD++ S K L + N L L G S S EL+V D +R + G
Sbjct: 42 NFYKIPDNLP--FSTKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGA 95
Query: 403 IHTLEVLS---VRYNNIKQLP-TTMSSLSSLREL---DVSFNELESVPESLCFATTLVKM 455
+L LS + N I+ L S LSSL++L + + LE+ P + TL ++
Sbjct: 96 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKEL 153
Query: 456 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLR-----VQENPL 510
N+ +N LP NL LE LD+S+N+I+ + + LRVL L
Sbjct: 154 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQMPLLNLSLDL 208
Query: 511 EVPPRNIVEMGA 522
+ P N ++ GA
Sbjct: 209 SLNPMNFIQPGA 220
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 211 TLKSGAVSGQDG-EKLSLIK--LASL--IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKL 265
+L GA SG +KL ++ LASL + K ++LN+ + L+ + + LP+ L
Sbjct: 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNL 172
Query: 266 SSLVSLDLSENRIVAVPAT 284
++L LDLS N+I ++ T
Sbjct: 173 TNLEHLDLSSNKIQSIYCT 191
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 257 WLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIEL 304
+LPD +L +L LDLS+ ++ + P LSSL+ L++ N L
Sbjct: 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 11/207 (5%)
Query: 265 LSSLVSLDLSENRIV---AVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRG 321
L SL LDLS N + + G +SL+ LDL N I + + L L +LD +
Sbjct: 344 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 403
Query: 322 NQISALP--VALSRLVRLEELDLGSNNLSSLPDSIG-SLISLKKLIVETNDLEE--LPHT 376
+ + + A L +L LD+ N D I L SL L + N ++ L +
Sbjct: 404 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 463
Query: 377 IGQCSSLRELRVDYNRLKALPEAV-GKIHTLEVLSVRYNNIKQLPTT-MSSLSSLRELDV 434
++L L + +L+ + V +H L++L++ +NN+ L ++ + L SL LD
Sbjct: 464 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 523
Query: 435 SFNELESVPESL-CFATTLVKMNIGNN 460
SFN +E+ L F +L N+ NN
Sbjct: 524 SFNRIETSKGILQHFPKSLAFFNLTNN 550
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 347 LSSLPDSIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKALPE-AVGKIH 404
LS +PD I S S K + + N L+ L ++ S L+ L + ++ + + A +H
Sbjct: 18 LSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH 75
Query: 405 TLEVLSVRYNNIKQL-PTTMSSLSSLREL---DVSFNELESVPESLCFATTLVKMNIGNN 460
L L + N I+ P + S L+SL L + LES P TL K+N+ +N
Sbjct: 76 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ--LITLKKLNVAHN 133
Query: 461 FADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENP 509
F LP NL L +D+S N I+ + ++ L+ LR ENP
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT-----VNDLQFLR--ENP 175
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 259 PDSIGKLSSLVSLDLSENRIVAVPAT-IGGLSSLKKLDLHANRI--IELPDSIGDLLSLV 315
P S L+SL +L E ++ ++ + IG L +LKKL++ N I +LP +L +LV
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 316 YLDLRGNQISALPVALSRLVRLE-----ELDLGSNNLSSLPDSIGSLISLKKLIVETN 368
++DL N I + V + +R LD+ N + + D I L +L + N
Sbjct: 152 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 209
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 267 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLS-LVYLDLRGNQIS 325
S ++D S + +VP I ++ + L L+ N+I +L + D L+ L LDL NQ++
Sbjct: 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 326 ALPVAL-SRLVRLEELDLGSNNLSSLPDSIGSLISLKKL 363
LP + +L +L +L L N L S+P G+ +LK L
Sbjct: 68 VLPAGVFDKLTQLTQLSLNDNQLKSIPR--GAFDNLKSL 104
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 432 LDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLP 491
+D S L SVP + TT V N L P L L LD+ NNQ+ VLP
Sbjct: 14 VDCSGKSLASVPTGIP-TTTQVLYLYDNQITKLE--PGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 492 DS-FRMLSRLRVLRVQENPLEVPPR 515
F L++L L + +N L+ PR
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSIPR 95
Score = 32.0 bits (71), Expect = 0.90, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 259 PDSIGKLSSLVSLDLSENRIVAVPATI-GGLSSLKKLDLHANRIIELP-DSIGDLLSLVY 316
P +L+ L LDL N++ +PA + L+ L +L L+ N++ +P + +L SL +
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 106
Query: 317 LDLRGN 322
+ L N
Sbjct: 107 IWLLNN 112
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 267 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLS-LVYLDLRGNQIS 325
S ++D S + +VP I ++ + L L+ N+I +L + D L+ L LDL NQ++
Sbjct: 18 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 75
Query: 326 ALPVAL-SRLVRLEELDLGSNNLSSLPDSIGSLISLKKL 363
LP + +L +L +L L N L S+P G+ +LK L
Sbjct: 76 VLPAGVFDKLTQLTQLSLNDNQLKSIPR--GAFDNLKSL 112
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 432 LDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLP 491
+D S L SVP + TT V N L P L L LD+ NNQ+ VLP
Sbjct: 22 VDCSGKSLASVPTGIP-TTTQVLYLYDNQITKLE--PGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 492 DS-FRMLSRLRVLRVQENPLEVPPR 515
F L++L L + +N L+ PR
Sbjct: 79 AGVFDKLTQLTQLSLNDNQLKSIPR 103
Score = 32.0 bits (71), Expect = 0.91, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 259 PDSIGKLSSLVSLDLSENRIVAVPATI-GGLSSLKKLDLHANRIIELP-DSIGDLLSLVY 316
P +L+ L LDL N++ +PA + L+ L +L L+ N++ +P + +L SL +
Sbjct: 55 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 114
Query: 317 LDLRGN 322
+ L N
Sbjct: 115 IWLLNN 120
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 11/207 (5%)
Query: 265 LSSLVSLDLSENRIV---AVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRG 321
L SL LDLS N + + G +SL+ LDL N I + + L L +LD +
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408
Query: 322 NQISALP--VALSRLVRLEELDLGSNNLSSLPDSIG-SLISLKKLIVETNDLEE--LPHT 376
+ + + A L +L LD+ N D I L SL L + N ++ L +
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468
Query: 377 IGQCSSLRELRVDYNRLKALPEAV-GKIHTLEVLSVRYNNIKQLPTT-MSSLSSLRELDV 434
++L L + +L+ + V +H L++L++ +NN+ L ++ + L SL LD
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528
Query: 435 SFNELESVPESL-CFATTLVKMNIGNN 460
SFN +E+ L F +L N+ NN
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNLTNN 555
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 347 LSSLPDSIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKALPE-AVGKIH 404
LS +PD I S S K + + N L+ L ++ S L+ L + ++ + + A +H
Sbjct: 23 LSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH 80
Query: 405 TLEVLSVRYNNIKQL-PTTMSSLSSLREL---DVSFNELESVPESLCFATTLVKMNIGNN 460
L L + N I+ P + S L+SL L + LES P TL K+N+ +N
Sbjct: 81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ--LITLKKLNVAHN 138
Query: 461 FADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENP 509
F LP NL L +D+S N I+ + ++ L+ LR ENP
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT-----VNDLQFLR--ENP 180
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 259 PDSIGKLSSLVSLDLSENRIVAVPAT-IGGLSSLKKLDLHANRI--IELPDSIGDLLSLV 315
P S L+SL +L E ++ ++ + IG L +LKKL++ N I +LP +L +LV
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 316 YLDLRGNQISALPV 329
++DL N I + V
Sbjct: 157 HVDLSYNYIQTITV 170
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 30/231 (12%)
Query: 264 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRI-IELPDSIGDL--LSLVYLDLR 320
KL SL L + N+ + + L SL+ LDL N + + S D SL YLDL
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 321 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 380
N + + L +LE LD +NL + + +SL+ LI ++ HT
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIY-----LDISHT---- 431
Query: 381 SSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQ--LPTTMSSLSSLRELDVSFNE 438
RV +N + + +LEVL + N+ ++ LP + L +L LD+S +
Sbjct: 432 ----HTRVAFNGI------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 439 LESV-PESLCFATTLVKMNIG-NNFADLRALPRSIGNLEMLEELDISNNQI 487
LE + P + ++L +N+ NNF L P L L+ LD S N I
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHI 530
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 423 MSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDI 482
+SSL L ++ + LE+ P + TL ++N+ +N LP NL LE LD+
Sbjct: 99 LSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 483 SNNQIRVLPDSFRMLSRLRVLR-----VQENPLEVPPRNIVEMGA 522
S+N+I+ + + LRVL L + P N ++ GA
Sbjct: 157 SSNKIQSI-----YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 211 TLKSGAVSGQDG-EKLSLIK--LASL--IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKL 265
+L GA SG +KL ++ LASL + K ++LN+ + L+ + + LP+ L
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNL 148
Query: 266 SSLVSLDLSENRIVAVPAT 284
++L LDLS N+I ++ T
Sbjct: 149 TNLEHLDLSSNKIQSIYCT 167
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 257 WLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIEL 304
+LPD +L +L LDLS+ ++ + P LSSL+ L++ N L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 312 LSLVYLDLRGNQISALPVALSR-LVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDL 370
+S+ ++L+ ++ S L + R R++ELDL + +L+ LP I + SLKKL++ N
Sbjct: 253 MSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSF 312
Query: 371 EELPH-TIGQCSSLRELRVDYN--RLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLS 427
++L SLR+L + N +L + K+ L+ L + +++I+ L
Sbjct: 313 DQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLK 372
Query: 428 SLRE---LDVSFNE 438
+LR L++S+NE
Sbjct: 373 NLRHLQYLNLSYNE 386
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 88/360 (24%), Positives = 154/360 (42%), Gaps = 69/360 (19%)
Query: 207 IHDSTLKS---GAVSGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIG 263
+ +STL+S G D + L+ L ++S +NLQ ++ +
Sbjct: 221 LQNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMS----VESINLQKHRFSDLS--SSTFR 274
Query: 264 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGN 322
+ + LDL+ + +P+ I G++SLKKL L+AN +L + SL L ++GN
Sbjct: 275 CFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGN 334
Query: 323 QISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSS 382
+ +LDLG+ L L + L+KL + +D+E Q +
Sbjct: 335 --------------MRKLDLGTRCLEKLEN-------LQKLDLSHSDIEASDCCNLQLKN 373
Query: 383 LRELR---VDYNRLKAL-PEAVGKIHTLEVLSVRYN--NIKQLPTTMSSLSSLRELDVSF 436
LR L+ + YN L +A + LE+L V + ++K + +L LR L++S
Sbjct: 374 LRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433
Query: 437 NELESVPESLCFA-TTLVKMNI-GNNFADLRA----LPRSIGNLEML------------- 477
L++ + L L +N+ GN+F D L + +G+LE+L
Sbjct: 434 CLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQ 493
Query: 478 --------EELDISNNQIRVLPDSFRMLSRLRVLRVQ---ENPLEVPPRNIVEMGAQAVV 526
LD+S+N + DS LS L+ L + N +PP + + Q+++
Sbjct: 494 AFHGLRNVNHLDLSHNSLT--GDSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSII 551
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 71/141 (50%), Gaps = 26/141 (18%)
Query: 398 EAVGKIHTLEVLSVRYNNIK---QLPTTMSSLSSLRELDVSFNELES--VPESLCFATTL 452
+ + L+ L ++ N +K ++ ++SSL LDVS N L S + +A ++
Sbjct: 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430
Query: 453 VKMNIGNNFA---------------DLR-----ALPRSIGNLEMLEELDISNNQIRVLPD 492
+ +N+ +N DL ++P+ + +L+ L+EL++++NQ++ +PD
Sbjct: 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD 490
Query: 493 S-FRMLSRLRVLRVQENPLEV 512
F L+ L+ + + +NP +
Sbjct: 491 GVFDRLTSLQYIWLHDNPWDC 511
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 340 LDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLKALPE 398
+D + NL+ +P + K L + N + EL I S LR LR+ +NR+++L
Sbjct: 36 VDYSNRNLTHVPKDLPP--RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF 93
Query: 399 AVGKIHT-LEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP 443
V + LE L V +N ++ + + ++SLR LD+SFN+ + +P
Sbjct: 94 HVFLFNQDLEYLDVSHNRLQNI--SCCPMASLRHLDLSFNDFDVLP 137
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 236 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRI--VAVPATIGGLSSLKK 293
S+ K + L LQ + N + +SSL +LD+S N + A T S+
Sbjct: 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432
Query: 294 LDLHANRIIELPDSIGDLL--SLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLP 351
L+L +N L S+ L + LDL N+I ++P ++ L L+EL++ SN L S+P
Sbjct: 433 LNLSSNM---LTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVP 489
Query: 352 DSIGS-LISLKKLIVETN 368
D + L SL+ + + N
Sbjct: 490 DGVFDRLTSLQYIWLHDN 507
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 17/145 (11%)
Query: 313 SLVYLDLRGNQIS-ALPVALSRLVRLEELDL---GSNNLSSLPDSIGSLISLKKLIVETN 368
S +L+ N + ++ S L RL+ L L G N + ++ SL+ L V N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 369 DLEELPH--TIGQCSSLRELRVDYNRL-----KALPEAVGKIHTLEVLSVRYNNIKQLPT 421
L + T S+ L + N L + LP V +VL + N I +P
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV------KVLDLHNNRIMSIPK 467
Query: 422 TMSSLSSLRELDVSFNELESVPESL 446
++ L +L+EL+V+ N+L+SVP+ +
Sbjct: 468 DVTHLQALQELNVASNQLKSVPDGV 492
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 277 RIVAVPATIGGLSSLKKLDLHANRIIELPDSIGD-LLSLVYLDLRGNQISALPVAL-SRL 334
R+ +VPA I + ++L L+ N+I +L + D L++L L N+++A+P + +L
Sbjct: 23 RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80
Query: 335 VRLEELDLGSNNLSSLPDSIGSLISLKKL 363
+L +LDL N+L S+P G+ +LK L
Sbjct: 81 TQLTQLDLNDNHLKSIPR--GAFDNLKSL 107
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 253 DNIEWLPD-SIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHAN---RIIELPDS 307
+ I ++P S +L L L N + + A GL+ L++LDL N R+++ P +
Sbjct: 41 NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVD-PTT 99
Query: 308 IGDLLSLVYLDLRGNQISALPVALSR-LVRLEELDLGSNNLSSLPD-SIGSLISLKKLIV 365
L L L L + L L R L L+ L L NNL +LPD + L +L L +
Sbjct: 100 FRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFL 159
Query: 366 ETNDLEELP-HTIGQCSSLRELRVDYNRL-KALPEAVGKIHTLEVLSVRYNNIKQLPT-T 422
N + +P H SL L + N + + P A + L L + NN+ LP
Sbjct: 160 HGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEV 219
Query: 423 MSSLSSLRELDVSFN 437
+ L SL+ L ++ N
Sbjct: 220 LVPLRSLQYLRLNDN 234
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 15/149 (10%)
Query: 378 GQCSSLRELRVDYN----RLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELD 433
G C E +V + L+A+P + + + + + N I +P +S S R L
Sbjct: 3 GACVCYNEPKVTTSCPQQGLQAVPTGIPA--SSQRIFLHGNRISYVPA--ASFQSCRNLT 58
Query: 434 VSF---NELESVPESLCFATTLV-KMNIGNNFADLRAL-PRSIGNLEMLEELDISNNQIR 488
+ + N L + + TL+ ++++ +N A LR + P + L L L + ++
Sbjct: 59 ILWLHSNALAGIDAAAFTGLTLLEQLDLSDN-AQLRVVDPTTFRGLGHLHTLHLDRCGLQ 117
Query: 489 VL-PDSFRMLSRLRVLRVQENPLEVPPRN 516
L P FR L+ L+ L +Q+N L+ P N
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNNLQALPDN 146
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 44/161 (27%)
Query: 261 SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRI--IELPDSIGDLLSLVYLD 318
+ L LV+L+ + + P IG L +LK+L++ N I +LP+ +L +L +LD
Sbjct: 100 GLSSLQKLVALETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 319 LRGNQISALPVALSRL----------------------------VRLEELDLGSNNLSSL 350
L N+I ++ R+ +RL+EL L +N L S+
Sbjct: 158 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV 217
Query: 351 PDSI-GSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDY 390
PD I L SL+K+ + TN + CS R+DY
Sbjct: 218 PDGIFDRLTSLQKIWLHTNPWD--------CSC---PRIDY 247
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 9/145 (6%)
Query: 265 LSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGN 322
LS L +L L+ N I ++ GLSSL+KL + L + IG L +L L++ N
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHN 136
Query: 323 QISA--LPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 380
I + LP S L LE LDL SN + S+ + ++ L+ + DL P Q
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 196
Query: 381 SSLRELRV-----DYNRLKALPEAV 400
+ +E+R+ D N+LK++P+ +
Sbjct: 197 GAFKEIRLKELALDTNQLKSVPDGI 221
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 95/218 (43%), Gaps = 42/218 (19%)
Query: 290 SLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALP-VALSRLVRLEELDLGSNNL 347
S K LDL N + L S L LDL +I + A L L L L N +
Sbjct: 31 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 90
Query: 348 SSLP-DSIGSLISLKKLI-VETN--DLEELPHTIGQCSSLRELRVDYNRLKA--LPEAVG 401
SL + L SL+KL+ +ETN LE P IG +L+EL V +N +++ LPE
Sbjct: 91 QSLALGAFSGLSSLQKLVALETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFS 148
Query: 402 KIHTLEVLSVRYNNIK-----------QLPTTMSSLSS-----------------LRELD 433
+ LE L + N I+ Q+P SL L+EL
Sbjct: 149 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 208
Query: 434 VSFNELESVPESLCF--ATTLVKMNIGNNFADLRALPR 469
+ N+L+SVP+ + F T+L K+ + N D + PR
Sbjct: 209 LDTNQLKSVPDGI-FDRLTSLQKIWLHTNPWDC-SCPR 244
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 23/169 (13%)
Query: 346 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCS--SLRELRV-DYNRLKALPEAVGK 402
N +PD++ S K L + N L L G S S EL+V D +R + G
Sbjct: 20 NFYKIPDNLP--FSTKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGA 73
Query: 403 IHTLEVLS---VRYNNIKQLP----TTMSSLSSLRELDVSFNELESVPESLCFATTLVKM 455
+L LS + N I+ L + +SSL L L+ + LE+ P + TL ++
Sbjct: 74 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFP--IGHLKTLKEL 131
Query: 456 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLR 504
N+ +N LP NL LE LD+S+N+I+ + + LRVL
Sbjct: 132 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLH 175
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 118/251 (47%), Gaps = 39/251 (15%)
Query: 260 DSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 319
D + L++L ++ S N++ + + L+ L + ++ N+I ++ + +L +L L L
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 119
Query: 320 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV--ETNDLEELPHTI 377
NQI+ + L L L L+L SN +S + ++ L SL++L + DL+ L +
Sbjct: 120 FNNQITDID-PLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLAN-- 175
Query: 378 GQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFN 437
++L L + N++ + + K+ LE L N I + T + L++L EL ++ N
Sbjct: 176 --LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGN 231
Query: 438 ELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRML 497
+L+ + ++ +L L +LD++NNQI L L
Sbjct: 232 QLKDI--------------------------GTLASLTNLTDLDLANNQISNLA-PLSGL 264
Query: 498 SRLRVLRVQEN 508
++L L++ N
Sbjct: 265 TKLTELKLGAN 275
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 261 SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 320
++ L++L LDL+ N+I + A + GL+ L +L L AN+I + G L +L L+L
Sbjct: 238 TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LTALTNLELN 295
Query: 321 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 380
NQ+ + +S L L L L NN+S + + SL L++L N + ++ ++
Sbjct: 296 ENQLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDV-SSLANL 352
Query: 381 SSLRELRVDYNRLKAL 396
+++ L +N++ L
Sbjct: 353 TNINWLSAGHNQISDL 368
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 9/145 (6%)
Query: 265 LSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGN 322
LS L +L L+ N I ++ GLSSL+KL + L + IG L +L L++ N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 323 QISA--LPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 380
I + LP S L LE LDL SN + S+ + ++ L+ + DL P Q
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 381 SSLRELRV-----DYNRLKALPEAV 400
+ +E+R+ D N+LK++P+ +
Sbjct: 195 GAFKEIRLKELALDTNQLKSVPDGI 219
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 95/218 (43%), Gaps = 42/218 (19%)
Query: 290 SLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALP-VALSRLVRLEELDLGSNNL 347
S K LDL N + L S L LDL +I + A L L L L N +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 348 SSLP-DSIGSLISLKKLI-VETN--DLEELPHTIGQCSSLRELRVDYNRLKA--LPEAVG 401
SL + L SL+KL+ VETN LE P IG +L+EL V +N +++ LPE
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 402 KIHTLEVLSVRYNNIK-----------QLPTTMSSLSS-----------------LRELD 433
+ LE L + N I+ Q+P SL L+EL
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 206
Query: 434 VSFNELESVPESLCF--ATTLVKMNIGNNFADLRALPR 469
+ N+L+SVP+ + F T+L K+ + N D + PR
Sbjct: 207 LDTNQLKSVPDGI-FDRLTSLQKIWLHTNPWDC-SCPR 242
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 36/186 (19%)
Query: 211 TLKSGAVSGQDG-EKLSLIK--LASL--IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKL 265
+L GA SG +KL ++ LASL + K ++LN+ + L+ + + LP+ L
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNL 148
Query: 266 SSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQIS 325
++L LDLS N+I ++ T DL R++ + L L + Q
Sbjct: 149 TNLEHLDLSSNKIQSIYCT----------DL---RVLHQMPLLNLSLDLSLNPMNFIQPG 195
Query: 326 ALPVALSRLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVETNDLEELPHTIGQCSSLR 384
A + +RL+EL L +N L S+PD I L SL+K+ + TN + CS
Sbjct: 196 AF-----KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD--------CSC-- 240
Query: 385 ELRVDY 390
R+DY
Sbjct: 241 -PRIDY 245
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 23/169 (13%)
Query: 346 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCS--SLRELRV-DYNRLKALPEAVGK 402
N +PD++ S K L + N L L G S S EL+V D +R + G
Sbjct: 18 NFYKIPDNLP--FSTKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGA 71
Query: 403 IHTLEVLS---VRYNNIKQLP-TTMSSLSSLREL---DVSFNELESVPESLCFATTLVKM 455
+L LS + N I+ L S LSSL++L + + LE+ P + TL ++
Sbjct: 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKEL 129
Query: 456 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLR 504
N+ +N LP NL LE LD+S+N+I+ + + LRVL
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLH 173
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 20/147 (13%)
Query: 261 SIGKLSSLVSLDLSENRIVAVPAT--------IGGLSSLKKLDLHANRI--IELPDSIGD 310
++G S L SL ++VAV IG L +LK+L++ N I +LP+ +
Sbjct: 92 ALGAFSGLSSLQ----KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 311 LLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSI---GSL--ISLKKLIV 365
L +L +LDL N+I ++ R++ L S +LS P + G+ I LK+L +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207
Query: 366 ETNDLEELPHTI-GQCSSLRELRVDYN 391
+TN L+ +P I + +SL+++ + N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 118/251 (47%), Gaps = 39/251 (15%)
Query: 260 DSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 319
D + L++L ++ S N++ + + L+ L + ++ N+I ++ + +L +L L L
Sbjct: 61 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 118
Query: 320 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV--ETNDLEELPHTI 377
NQI+ + L L L L+L SN +S + ++ L SL++L + DL+ L +
Sbjct: 119 FNNQITDID-PLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLAN-- 174
Query: 378 GQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFN 437
++L L + N++ + + K+ LE L N I + T + L++L EL ++ N
Sbjct: 175 --LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGN 230
Query: 438 ELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRML 497
+L+ + ++ +L L +LD++NNQI L L
Sbjct: 231 QLKDI--------------------------GTLASLTNLTDLDLANNQISNLA-PLSGL 263
Query: 498 SRLRVLRVQEN 508
++L L++ N
Sbjct: 264 TKLTELKLGAN 274
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 261 SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 320
++ L++L LDL+ N+I + A + GL+ L +L L AN+I + G L +L L+L
Sbjct: 237 TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LTALTNLELN 294
Query: 321 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 380
NQ+ + +S L L L L NN+S + + SL L++L N + ++ ++
Sbjct: 295 ENQLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVSDV-SSLANL 351
Query: 381 SSLRELRVDYNRLKAL 396
+++ L +N++ L
Sbjct: 352 TNINWLSAGHNQISDL 367
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 304 LPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKK 362
LP I ++ +YLD GNQ + +P LS L +DL +N +S+L + S ++ L
Sbjct: 25 LPKGIPRDVTELYLD--GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82
Query: 363 LIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLS 410
LI+ N L + P T SLR L + N + +PE G + L LS
Sbjct: 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE--GAFNDLSALS 129
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 38/167 (22%)
Query: 370 LEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPT-TMSSLSS 428
L+ LP I + + EL +D N+ +P+ + L ++ + N I L + S+++
Sbjct: 22 LKVLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79
Query: 429 LRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR 488
L L +S+N L +P PR+ L+ L L + N I
Sbjct: 80 LLTLILSYNRLRCIP------------------------PRTFDGLKSLRLLSLHGNDIS 115
Query: 489 VLPD-SFRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVVQYMADLVE 534
V+P+ +F LS L L + NPL +Q+++D V+
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPLY----------CDCNMQWLSDWVK 152
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 221 DGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVA 280
DG + +L+ E+S+ K ++L N + + S ++ L++L LS NR+
Sbjct: 39 DGNQFTLVP----KELSNYKHLTLIDLSNNRISTLS--NQSFSNMTQLLTLILSYNRLRC 92
Query: 281 VPA-TIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQI 324
+P T GL SL+ L LH N I +P+ + DL +L +L + N +
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 291 LKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALP-VALSRLVRLEELDLGSNNLSS 349
+ +L L N+ +P + + L +DL N+IS L + S + +L L L N L
Sbjct: 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 350 LPD-SIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRL 393
+P + L SL+ L + ND+ +P S+L L + N L
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 258 LPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVY 316
LP I + + L L N+ VP + L +DL NRI L + S ++ L+
Sbjct: 25 LPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82
Query: 317 LDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDL 370
L L N++ +P L L L L N++S +P+ + L +L L + N L
Sbjct: 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 9/145 (6%)
Query: 265 LSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGN 322
LS L +L L+ N I ++ GLSSL+KL + L + IG L +L L++ N
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 136
Query: 323 QISA--LPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 380
I + LP S L LE LDL SN + S+ + ++ L+ + DL P Q
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 196
Query: 381 SSLRELRV-----DYNRLKALPEAV 400
+ +E+R+ D N+LK++P+ +
Sbjct: 197 GAFKEIRLKELALDTNQLKSVPDGI 221
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 95/218 (43%), Gaps = 42/218 (19%)
Query: 290 SLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALP-VALSRLVRLEELDLGSNNL 347
S K LDL N + L S L LDL +I + A L L L L N +
Sbjct: 31 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 90
Query: 348 SSLP-DSIGSLISLKKLI-VETN--DLEELPHTIGQCSSLRELRVDYNRLKA--LPEAVG 401
SL + L SL+KL+ VETN LE P IG +L+EL V +N +++ LPE
Sbjct: 91 QSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFS 148
Query: 402 KIHTLEVLSVRYNNIK-----------QLPTTMSSLSS-----------------LRELD 433
+ LE L + N I+ Q+P SL L+EL
Sbjct: 149 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 208
Query: 434 VSFNELESVPESLCF--ATTLVKMNIGNNFADLRALPR 469
+ N+L+SVP+ + F T+L K+ + N D + PR
Sbjct: 209 LDTNQLKSVPDGI-FDRLTSLQKIWLHTNPWDC-SCPR 244
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 36/186 (19%)
Query: 211 TLKSGAVSGQDG-EKLSLIK--LASL--IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKL 265
+L GA SG +KL ++ LASL + K ++LN+ + L+ + + LP+ L
Sbjct: 92 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNL 150
Query: 266 SSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQIS 325
++L LDLS N+I ++ T DL R++ + L L + Q
Sbjct: 151 TNLEHLDLSSNKIQSIYCT----------DL---RVLHQMPLLNLSLDLSLNPMNFIQPG 197
Query: 326 ALPVALSRLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVETNDLEELPHTIGQCSSLR 384
A + +RL+EL L +N L S+PD I L SL+K+ + TN + CS
Sbjct: 198 AF-----KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD--------CSC-- 242
Query: 385 ELRVDY 390
R+DY
Sbjct: 243 -PRIDY 247
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 23/169 (13%)
Query: 346 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCS--SLRELRV-DYNRLKALPEAVGK 402
N +PD++ S K L + N L L G S S EL+V D +R + G
Sbjct: 20 NFYKIPDNLP--FSTKNLDLSWNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGA 73
Query: 403 IHTLEVLS---VRYNNIKQLP-TTMSSLSSLREL---DVSFNELESVPESLCFATTLVKM 455
+L LS + N I+ L S LSSL++L + + LE+ P + TL ++
Sbjct: 74 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKEL 131
Query: 456 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLR 504
N+ +N LP NL LE LD+S+N+I+ + + LRVL
Sbjct: 132 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLH 175
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 20/147 (13%)
Query: 261 SIGKLSSLVSLDLSENRIVAVPAT--------IGGLSSLKKLDLHANRI--IELPDSIGD 310
++G S L SL ++VAV IG L +LK+L++ N I +LP+ +
Sbjct: 94 ALGAFSGLSSLQ----KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 149
Query: 311 LLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSI---GSL--ISLKKLIV 365
L +L +LDL N+I ++ R++ L S +LS P + G+ I LK+L +
Sbjct: 150 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 209
Query: 366 ETNDLEELPHTI-GQCSSLRELRVDYN 391
+TN L+ +P I + +SL+++ + N
Sbjct: 210 DTNQLKSVPDGIFDRLTSLQKIWLHTN 236
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 118/251 (47%), Gaps = 39/251 (15%)
Query: 260 DSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 319
D + L++L ++ S N++ + + L+ L + ++ N+I ++ + +L +L L L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 114
Query: 320 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV--ETNDLEELPHTI 377
NQI+ + L L L L+L SN +S + ++ L SL++L + DL+ L +
Sbjct: 115 FNNQITDID-PLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFGNQVTDLKPLAN-- 170
Query: 378 GQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFN 437
++L L + N++ + + K+ LE L N I + T + L++L EL ++ N
Sbjct: 171 --LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGN 226
Query: 438 ELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRML 497
+L+ + ++ +L L +LD++NNQI L L
Sbjct: 227 QLKDI--------------------------GTLASLTNLTDLDLANNQISNLA-PLSGL 259
Query: 498 SRLRVLRVQEN 508
++L L++ N
Sbjct: 260 TKLTELKLGAN 270
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 261 SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 320
++ L++L LDL+ N+I + A + GL+ L +L L AN+I + G L +L L+L
Sbjct: 233 TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LTALTNLELN 290
Query: 321 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 380
NQ+ + +S L L L L NN+S + + SL L++L N + ++ ++
Sbjct: 291 ENQLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDV-SSLANL 347
Query: 381 SSLRELRVDYNRLKAL 396
+++ L +N++ L
Sbjct: 348 TNINWLSAGHNQISDL 363
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 9/145 (6%)
Query: 265 LSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGN 322
LS L +L L+ N I ++ GLSSL+KL + L + IG L +L L++ N
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 323 QISA--LPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 380
I + LP S L LE LDL SN + S+ + ++ L+ + DL P Q
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 195
Query: 381 SSLRELRV-----DYNRLKALPEAV 400
+ +E+R+ D N+LK++P+ +
Sbjct: 196 GAFKEIRLKELALDTNQLKSVPDGI 220
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 95/218 (43%), Gaps = 42/218 (19%)
Query: 290 SLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALP-VALSRLVRLEELDLGSNNL 347
S K LDL N + L S L LDL +I + A L L L L N +
Sbjct: 30 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 89
Query: 348 SSLP-DSIGSLISLKKLI-VETN--DLEELPHTIGQCSSLRELRVDYNRLKA--LPEAVG 401
SL + L SL+KL+ VETN LE P IG +L+EL V +N +++ LPE
Sbjct: 90 QSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFS 147
Query: 402 KIHTLEVLSVRYNNIK-----------QLPTTMSSLSS-----------------LRELD 433
+ LE L + N I+ Q+P SL L+EL
Sbjct: 148 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 207
Query: 434 VSFNELESVPESLCF--ATTLVKMNIGNNFADLRALPR 469
+ N+L+SVP+ + F T+L K+ + N D + PR
Sbjct: 208 LDTNQLKSVPDGI-FDRLTSLQKIWLHTNPWDC-SCPR 243
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 36/186 (19%)
Query: 211 TLKSGAVSGQDG-EKLSLIK--LASL--IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKL 265
+L GA SG +KL ++ LASL + K ++LN+ + L+ + + LP+ L
Sbjct: 91 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNL 149
Query: 266 SSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQIS 325
++L LDLS N+I ++ T DL R++ + L L + Q
Sbjct: 150 TNLEHLDLSSNKIQSIYCT----------DL---RVLHQMPLLNLSLDLSLNPMNFIQPG 196
Query: 326 ALPVALSRLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVETNDLEELPHTIGQCSSLR 384
A + +RL+EL L +N L S+PD I L SL+K+ + TN + CS
Sbjct: 197 AF-----KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD--------CSC-- 241
Query: 385 ELRVDY 390
R+DY
Sbjct: 242 -PRIDY 246
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 23/169 (13%)
Query: 346 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCS--SLRELRV-DYNRLKALPEAVGK 402
N +PD++ S K L + N L L G S S EL+V D +R + G
Sbjct: 19 NFYKIPDNLP--FSTKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGA 72
Query: 403 IHTLEVLS---VRYNNIKQLP-TTMSSLSSLREL---DVSFNELESVPESLCFATTLVKM 455
+L LS + N I+ L S LSSL++L + + LE+ P + TL ++
Sbjct: 73 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKEL 130
Query: 456 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLR 504
N+ +N LP NL LE LD+S+N+I+ + + LRVL
Sbjct: 131 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLH 174
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 20/147 (13%)
Query: 261 SIGKLSSLVSLDLSENRIVAVPAT--------IGGLSSLKKLDLHANRI--IELPDSIGD 310
++G S L SL ++VAV IG L +LK+L++ N I +LP+ +
Sbjct: 93 ALGAFSGLSSLQ----KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 311 LLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSI---GSL--ISLKKLIV 365
L +L +LDL N+I ++ R++ L S +LS P + G+ I LK+L +
Sbjct: 149 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 208
Query: 366 ETNDLEELPHTI-GQCSSLRELRVDYN 391
+TN L+ +P I + +SL+++ + N
Sbjct: 209 DTNQLKSVPDGIFDRLTSLQKIWLHTN 235
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 9/145 (6%)
Query: 265 LSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGN 322
LS L +L L+ N I ++ GLSSL+KL + L + IG L +L L++ N
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 323 QISA--LPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 380
I + LP S L LE LDL SN + S+ + ++ L+ + DL P Q
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 195
Query: 381 SSLRELRV-----DYNRLKALPEAV 400
+ +E+R+ D N+LK++P+ +
Sbjct: 196 GAFKEIRLKELALDTNQLKSVPDGI 220
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 95/218 (43%), Gaps = 42/218 (19%)
Query: 290 SLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALP-VALSRLVRLEELDLGSNNL 347
S K LDL N + L S L LDL +I + A L L L L N +
Sbjct: 30 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 89
Query: 348 SSLP-DSIGSLISLKKLI-VETN--DLEELPHTIGQCSSLRELRVDYNRLKA--LPEAVG 401
SL + L SL+KL+ VETN LE P IG +L+EL V +N +++ LPE
Sbjct: 90 QSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFS 147
Query: 402 KIHTLEVLSVRYNNIK-----------QLPTTMSSLSS-----------------LRELD 433
+ LE L + N I+ Q+P SL L+EL
Sbjct: 148 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 207
Query: 434 VSFNELESVPESLCF--ATTLVKMNIGNNFADLRALPR 469
+ N+L+SVP+ + F T+L K+ + N D + PR
Sbjct: 208 LDTNQLKSVPDGI-FDRLTSLQKIWLHTNPWDC-SCPR 243
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 36/186 (19%)
Query: 211 TLKSGAVSGQDG-EKLSLIK--LASL--IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKL 265
+L GA SG +KL ++ LASL + K ++LN+ + L+ + + LP+ L
Sbjct: 91 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNL 149
Query: 266 SSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQIS 325
++L LDLS N+I ++ T DL R++ + L L + Q
Sbjct: 150 TNLEHLDLSSNKIQSIYCT----------DL---RVLHQMPLLNLSLDLSLNPMNFIQPG 196
Query: 326 ALPVALSRLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVETNDLEELPHTIGQCSSLR 384
A + +RL+EL L +N L S+PD I L SL+K+ + TN + CS
Sbjct: 197 AF-----KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD--------CSC-- 241
Query: 385 ELRVDY 390
R+DY
Sbjct: 242 -PRIDY 246
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 23/169 (13%)
Query: 346 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCS--SLRELRV-DYNRLKALPEAVGK 402
N +PD++ S K L + N L L G S S EL+V D +R + G
Sbjct: 19 NFYKIPDNLP--FSTKNLDLSWNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGA 72
Query: 403 IHTLEVLS---VRYNNIKQLP-TTMSSLSSLREL---DVSFNELESVPESLCFATTLVKM 455
+L LS + N I+ L S LSSL++L + + LE+ P + TL ++
Sbjct: 73 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKEL 130
Query: 456 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLR 504
N+ +N LP NL LE LD+S+N+I+ + + LRVL
Sbjct: 131 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLH 174
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 20/147 (13%)
Query: 261 SIGKLSSLVSLDLSENRIVAVPAT--------IGGLSSLKKLDLHANRI--IELPDSIGD 310
++G S L SL ++VAV IG L +LK+L++ N I +LP+ +
Sbjct: 93 ALGAFSGLSSLQ----KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 148
Query: 311 LLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSI---GSL--ISLKKLIV 365
L +L +LDL N+I ++ R++ L S +LS P + G+ I LK+L +
Sbjct: 149 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 208
Query: 366 ETNDLEELPHTI-GQCSSLRELRVDYN 391
+TN L+ +P I + +SL+++ + N
Sbjct: 209 DTNQLKSVPDGIFDRLTSLQKIWLHTN 235
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 118/251 (47%), Gaps = 39/251 (15%)
Query: 260 DSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 319
D + L++L ++ S N++ + + L+ L + ++ N+I ++ + +L +L L L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 114
Query: 320 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV--ETNDLEELPHTI 377
NQI+ + L L L L+L SN +S + ++ L SL++L + DL+ L +
Sbjct: 115 FNNQITDID-PLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFGNQVTDLKPLAN-- 170
Query: 378 GQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFN 437
++L L + N++ + + K+ LE L N I + T + L++L EL ++ N
Sbjct: 171 --LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGN 226
Query: 438 ELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRML 497
+L+ + ++ +L L +LD++NNQI L L
Sbjct: 227 QLKDI--------------------------GTLASLTNLTDLDLANNQISNLA-PLSGL 259
Query: 498 SRLRVLRVQEN 508
++L L++ N
Sbjct: 260 TKLTELKLGAN 270
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 261 SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 320
++ L++L LDL+ N+I + A + GL+ L +L L AN+I + G L +L L+L
Sbjct: 233 TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LTALTNLELN 290
Query: 321 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 380
NQ+ + +S L L L L NN+S + + SL L++L N + ++ ++
Sbjct: 291 ENQLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFSNNKVSDV-SSLANL 347
Query: 381 SSLRELRVDYNRLKAL 396
+++ L +N++ L
Sbjct: 348 TNINWLSAGHNQISDL 363
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 42/205 (20%)
Query: 343 GSNNLSSLPDSIGSLISLKKLIVETNDLEE--LPHTIGQCSSLRELRVDYNRLKALP-EA 399
G ++S+ D +G ++S LI E+++L + + L+ R RL +P
Sbjct: 84 GHTPIASILDYLG-IVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANL 142
Query: 400 VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGN 459
+ + L L +R N I+++P+ + F++LE++ ES+ F +
Sbjct: 143 LTDMRNLSHLELRAN-IEEMPSHL------------FDDLENL-ESIEFGSN-------- 180
Query: 460 NFADLRALPRSI-GNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVP-PRN 516
LR +PR I G + L++L++++NQ++ +PD F L+ L+ + + NP + PR
Sbjct: 181 ---KLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR- 236
Query: 517 IVEMGAQAVVQYMADLVEKRDAKTQ 541
+ Y++ + K K Q
Sbjct: 237 ---------IDYLSRWLNKNSQKEQ 252
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 262 IGKLSSLVSLDLSENRIVAVPATIGG-LSSLKKLDLHAN 299
GK+ L L+L+ N++ +VP I L+SL+K+ LH N
Sbjct: 190 FGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 80/151 (52%), Gaps = 7/151 (4%)
Query: 294 LDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSL-P 351
+D + E+P ++ + ++ + L+ N I +P A S +L +DL +N +S L P
Sbjct: 16 VDCRGKGLTEIPTNLPETITEIRLE--QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP 73
Query: 352 DSIGSLISLKKLIVETNDLEELPHTIGQ-CSSLRELRVDYNRLKALP-EAVGKIHTLEVL 409
D+ L SL L++ N + ELP ++ + SL+ L ++ N++ L +A +H L +L
Sbjct: 74 DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133
Query: 410 SVRYNNIKQLP-TTMSSLSSLRELDVSFNEL 439
S+ N ++ + T S L +++ + ++ N
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 259 PDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPDSIGD-LLSLVY 316
P + L +DLS N+I + P GL SL L L+ N+I ELP S+ + L SL
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 317 LDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSL 350
L L N+I+ L V A L L L L N L ++
Sbjct: 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 468 PRSIGNLEMLEELDISNNQIRVL-PDSFRMLSRLRVLRVQENPLEVPPRNIVE 519
P + + L +D+SNNQI L PD+F+ L L L + N + P+++ E
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 228 IKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIG- 286
IK+ S K R ++L N + E PD+ L SL SL L N+I +P ++
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101
Query: 287 GLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGNQISALPVA-LSRLVRLEELDLGS 344
GL SL+ L L+AN+I L D+ DL +L L L N++ + S L ++ + L
Sbjct: 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161
Query: 345 N 345
N
Sbjct: 162 N 162
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 25/160 (15%)
Query: 294 LDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSL-P 351
+D + E+P ++ + ++ + L+ N I +P A S +L +DL +N +S L P
Sbjct: 16 VDCRGKGLTEIPTNLPETITEIRLE--QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP 73
Query: 352 DSIGSLISLKKLIVETNDLEELPHTIGQ-----------CSSLRELRVDYNRLKALPEAV 400
D+ L SL L++ N + ELP ++ + + + LRVD A
Sbjct: 74 DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVD---------AF 124
Query: 401 GKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNEL 439
+H L +LS+ N ++ + T S L +++ + ++ N
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 259 PDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPDSI 308
P + L +DLS N+I + P GL SL L L+ N+I ELP S+
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 468 PRSIGNLEMLEELDISNNQIRVL-PDSFRMLSRLRVLRVQENPLEVPPRNIVE 519
P + + L +D+SNNQI L PD+F+ L L L + N + P+++ E
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 228 IKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIG- 286
IK+ S K R ++L N + E PD+ L SL SL L N+I +P ++
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101
Query: 287 GLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGNQISALPVA-LSRLVRLEELDLGS 344
GL SL+ L L+AN+I L D+ DL +L L L N++ + S L ++ + L
Sbjct: 102 GLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161
Query: 345 N 345
N
Sbjct: 162 N 162
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 15/147 (10%)
Query: 378 GQCSSLRELRVDYNRLKAL---PEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDV 434
G SL+ L + N L+++ E + + L L + N +P + +R L++
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL 417
Query: 435 SFNELESVPESLCFATTLVKMNIGNNFADLRAL--PRSIGNLEMLEELDISNNQIRVLPD 492
S + V C TL +++ NN D +L PR L+EL IS N+++ LPD
Sbjct: 418 SSTGIRVVKT--CIPQTLEVLDVSNNNLDSFSLFLPR-------LQELYISRNKLKTLPD 468
Query: 493 SFRMLSRLRVLRVQENPLEVPPRNIVE 519
+ + L V+++ N L+ P I +
Sbjct: 469 A-SLFPVLLVMKISRNQLKSVPDGIFD 494
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 278 IVAVPATIGGLSSLKKLDLHANRIIELPDSIGDL---LSLVYLDLRGNQISALPV-ALSR 333
++P+ G +++K LDL N+I + GDL +L L L+ ++I+ + A
Sbjct: 17 FTSIPS--GLTAAMKSLDLSFNKITYIGH--GDLRACANLQVLILKSSRINTIEGDAFYS 72
Query: 334 LVRLEELDLGSNNLSSLPDS-IGSLISLKKLIVETNDLEELPHT-------------IGQ 379
L LE LDL N+LSSL S G L SLK L + N + L T IG
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132
Query: 380 CSSLREL-RVDYNRLKALPE 398
+ E+ R+D+ L +L E
Sbjct: 133 VETFSEIRRIDFAGLTSLNE 152
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 265 LSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQI 324
L +L SLD+S N +P + ++ L+L + I + I L + LD+ N +
Sbjct: 386 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV--LDVSNNNL 443
Query: 325 SALPVALSRLVRLEELDLGSNNLSSLPDS 353
+ + L RL +EL + N L +LPD+
Sbjct: 444 DSFSLFLPRL---QELYISRNKLKTLPDA 469
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 260 DSIGKLSSLVSLDLSENRIVAVPAT-IGGLSSLKKLDLHAN 299
D+ L SL LDLS+N + ++ ++ G LSSLK L+L N
Sbjct: 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 15/147 (10%)
Query: 378 GQCSSLRELRVDYNRLKAL---PEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDV 434
G SL+ L + N L+++ E + + L L + N +P + +R L++
Sbjct: 384 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL 443
Query: 435 SFNELESVPESLCFATTLVKMNIGNNFADLRAL--PRSIGNLEMLEELDISNNQIRVLPD 492
S + V C TL +++ NN D +L PR L+EL IS N+++ LPD
Sbjct: 444 SSTGIRVVKT--CIPQTLEVLDVSNNNLDSFSLFLPR-------LQELYISRNKLKTLPD 494
Query: 493 SFRMLSRLRVLRVQENPLEVPPRNIVE 519
+ + L V+++ N L+ P I +
Sbjct: 495 A-SLFPVLLVMKIASNQLKSVPDGIFD 520
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 278 IVAVPATIGGLSSLKKLDLHANRIIELPDSIGDL---LSLVYLDLRGNQISALPV-ALSR 333
++P+ G +++K LDL N+I + GDL +L L L+ ++I+ + A
Sbjct: 43 FTSIPS--GLTAAMKSLDLSFNKITYIGH--GDLRACANLQVLILKSSRINTIEGDAFYS 98
Query: 334 LVRLEELDLGSNNLSSLPDS-IGSLISLKKLIVETNDLEELPHT-------------IGQ 379
L LE LDL N+LSSL S G L SLK L + N + L T IG
Sbjct: 99 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 158
Query: 380 CSSLREL-RVDYNRLKALPE 398
+ E+ R+D+ L +L E
Sbjct: 159 VETFSEIRRIDFAGLTSLNE 178
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 11/130 (8%)
Query: 265 LSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQI 324
L +L SLD+S N +P + ++ L+L + I + I L + LD+ N +
Sbjct: 412 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV--LDVSNNNL 469
Query: 325 SALPVALSRLVRLEELDLGSNNLSSLPDS--IGSLISLKKLIVETNDLEELPHTI-GQCS 381
+ + L RL +EL + N L +LPD+ L+ +K + +N L+ +P I + +
Sbjct: 470 DSFSLFLPRL---QELYISRNKLKTLPDASLFPVLLVMK---IASNQLKSVPDGIFDRLT 523
Query: 382 SLRELRVDYN 391
SL+++ + N
Sbjct: 524 SLQKIWLHTN 533
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 260 DSIGKLSSLVSLDLSENRIVAVPAT-IGGLSSLKKLDLHAN 299
D+ L SL LDLS+N + ++ ++ G LSSLK L+L N
Sbjct: 94 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 20/134 (14%)
Query: 405 TLEVLSVRYNNIKQLPTTMSSLSSLREL---DVSFNELESVPESLCFATTLVKMNIGNN- 460
+L+ L +R N++ L T +L +L+ L D+S N S+PE+ + + +N+ +
Sbjct: 362 SLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTR 421
Query: 461 -FADLRALPRSIGNLEM--------------LEELDISNNQIRVLPDSFRMLSRLRVLRV 505
+ +P+++ L++ L+EL IS N++ LPD+ +L L VL++
Sbjct: 422 IHSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTLPDA-SLLPMLLVLKI 480
Query: 506 QENPLEVPPRNIVE 519
N L+ P I +
Sbjct: 481 SRNQLKSVPDGIFD 494
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 248 QNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDS 307
QN L ++E +++ L +L ++D+S+N ++P T +K L+L + RI +
Sbjct: 370 QNHLA-SLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGC 428
Query: 308 IGDLLSLV------------------YLDLRGNQISALPVALSRLVRLEELDLGSNNLSS 349
I L ++ L + N++ LP A S L L L + N L S
Sbjct: 429 IPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTLPDA-SLLPMLLVLKISRNQLKS 487
Query: 350 LPDSI-GSLISLKKLIVETN 368
+PD I L SL+K+ + TN
Sbjct: 488 VPDGIFDRLTSLQKIWLHTN 507
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 134/300 (44%), Gaps = 34/300 (11%)
Query: 263 GKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLR 320
G ++ SLDLS NRI + + + +L+ L L +N I + DS L SL +LDL
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 321 GNQISALPVALSR-LVRLEELDLGSNNLSSLPDSIGSLIS-LKKL-IVETNDLEELPHT- 376
N +S L + + L L L+L N +L ++ SL S L KL I+ +++
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET--SLFSHLTKLQILRVGNMDTFTKIQ 166
Query: 377 ---IGQCSSLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRY-NNIKQLPTTMSSLSS--- 428
+ L EL +D + L++ P+++ I + L + +I L + SS
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226
Query: 429 --LRELDV---SFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDIS 483
LR+ D+ F+EL S E+ N+ L + + + + L EL+ S
Sbjct: 227 LELRDTDLDTFHFSEL-STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285
Query: 484 NNQIRVLPDS-FRMLSRLRVLRVQENPLEVP-PRNIVEMGAQAVVQYMADLVEKRDAKTQ 541
NQ++ +PD F L+ L+ + + NP + PR + Y++ + K K Q
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR----------IDYLSRWLNKNSQKEQ 335
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 110/231 (47%), Gaps = 26/231 (11%)
Query: 260 DSIGKLSSLVSLDLSENRIVAVPAT-IGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYL 317
DS L SL LDLS N + + ++ LSSL L+L N L + S+ L+ + +
Sbjct: 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153
Query: 318 DLRGNQISALPVA---LSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETND---- 369
GN + + + L LEEL++ +++L S P S+ S+ ++ LI+
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213
Query: 370 LEELPHTIG--QCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIK-------QLP 420
LE +C LR+ +D L + G+ ++L + + N+K Q+
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSEL--STGETNSL-IKKFTFRNVKITDESLFQVM 270
Query: 421 TTMSSLSSLRELDVSFNELESVPESLCF--ATTLVKMNIGNNFADLRALPR 469
++ +S L EL+ S N+L+SVP+ + F T+L K+ + N D + PR
Sbjct: 271 KLLNQISGLLELEFSRNQLKSVPDGI-FDRLTSLQKIWLHTNPWDC-SCPR 319
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 106/247 (42%), Gaps = 47/247 (19%)
Query: 290 SLKKLDLHANRIIELPDSI-GDLLSLVYLDLRGNQISALPVAL-SRLVRLEELDLGSNNL 347
+++KL + N I LP + ++ L L L N +S+LP + +L L + +NNL
Sbjct: 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159
Query: 348 SSLPD-SIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK--ALPEAVGKIH 404
+ D + + SL+ L + +N L + + SL V YN L A+P AV ++
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELD 217
Query: 405 T---------------LEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFA 449
L +L +++NN+ ++ L E+D+S+NELE +
Sbjct: 218 ASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN-YPGLVEVDLSYNELEKI-----MY 271
Query: 450 TTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENP 509
VKM + LE L ISNN++ L + + L+VL + N
Sbjct: 272 HPFVKM-------------------QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 312
Query: 510 LEVPPRN 516
L RN
Sbjct: 313 LLHVERN 319
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 19/145 (13%)
Query: 245 LNLQNKLMDNIEWLPDSIGKLSSLVSLDLSEN---RIVAVPATIGGLSSLKKLDLHANRI 301
L LQ+ + + WL + G LV +DLS N +I+ P + L++L + NR+
Sbjct: 237 LKLQHNNLTDTAWLLNYPG----LVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRL 290
Query: 302 IELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLK 361
+ L + +L LDL N + + + RLE L L N++ +L + + +LK
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL--KLSTHHTLK 348
Query: 362 KLIVETNDLEELPHTIGQCSSLREL 386
L + ND + C+SLR L
Sbjct: 349 NLTLSHNDWD--------CNSLRAL 365
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 47/247 (19%)
Query: 290 SLKKLDLHANRIIELPDSI-GDLLSLVYLDLRGNQISALPVALSRLV-RLEELDLGSNNL 347
+++KL + N I LP + ++ L L L N +S+LP + +L L + +NNL
Sbjct: 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153
Query: 348 SSL-PDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK--ALPEAV---- 400
+ D+ + SL+ L + +N L + + SL V YN L A+P AV
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELD 211
Query: 401 ----------GKIHT-LEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFA 449
G ++ L +L +++NN+ + + L E+D+S+NELE +
Sbjct: 212 ASHNSINVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKI-----MY 265
Query: 450 TTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENP 509
VKM + LE L ISNN++ L + + L+VL + N
Sbjct: 266 HPFVKM-------------------QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306
Query: 510 LEVPPRN 516
L RN
Sbjct: 307 LLHVERN 313
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 19/145 (13%)
Query: 245 LNLQNKLMDNIEWLPDSIGKLSSLVSLDLSEN---RIVAVPATIGGLSSLKKLDLHANRI 301
L LQ+ + + WL + G LV +DLS N +I+ P + L++L + NR+
Sbjct: 231 LKLQHNNLTDTAWLLNYPG----LVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRL 284
Query: 302 IELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLK 361
+ L + +L LDL N + + + RLE L L N++ +L + + +LK
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL--KLSTHHTLK 342
Query: 362 KLIVETNDLEELPHTIGQCSSLREL 386
L + ND + C+SLR L
Sbjct: 343 NLTLSHNDWD--------CNSLRAL 359
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 252 MDNIEWLPDSIGKLSSLVSLDLSENRIVAVPAT-IGGLSSLKKLDLHANRIIELPDS--- 307
+ N++ P L +L LDLS N I + + GL L+ LDL N + L
Sbjct: 471 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 530
Query: 308 ------IGDLLSLVYLDLRGNQISALPVALSR-LVRLEELDLGSNNLSSLPDSI-GSLIS 359
+ L L L+L N +PV + + L L+ +DLG NNL++LP S+ + +S
Sbjct: 531 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 590
Query: 360 LKKLIVETN 368
LK L ++ N
Sbjct: 591 LKSLNLQKN 599
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 36/139 (25%)
Query: 375 HTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTT-MSSLSSLRELD 433
H + CS L+ L +P+ + + VL++ +N +++LP + S L LD
Sbjct: 11 HEVADCSHLK--------LTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLD 60
Query: 434 VSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD- 492
V FN + + LC + LP ML+ L++ +N++ L D
Sbjct: 61 VGFNTISKLEPELC-----------------QKLP-------MLKVLNLQHNELSQLSDK 96
Query: 493 SFRMLSRLRVLRVQENPLE 511
+F + L L + N ++
Sbjct: 97 TFAFCTNLTELHLMSNSIQ 115
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 120/277 (43%), Gaps = 56/277 (20%)
Query: 274 SENRIVAVPA---TIGGLSSLKKLDLHANRIIELP----DSIGDLLSL------------ 314
S N+I A+ + I SSLKKL+L +N+I E +IG L L
Sbjct: 158 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 217
Query: 315 --VYLDLRGNQISALPVALSRL-------------VRLEELDLGSNNLSSLP-DSIGSLI 358
+ L+L I L ++ S+L L LDL NNL+ + DS L
Sbjct: 218 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 277
Query: 359 SLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIK 417
L+ +E N+++ L H++ ++R L + + K ++ + ++ S ++
Sbjct: 278 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ-SISLASLPKIDDFSFQW---- 332
Query: 418 QLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVK-MNIGNNFADLRALPR----SIG 472
L L L++ N++ + ++ +K +++ N+F LR L S+
Sbjct: 333 --------LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 384
Query: 473 NLEMLEELDISNNQI-RVLPDSFRMLSRLRVLRVQEN 508
+ L L+++ N+I ++ D+F L L VL + N
Sbjct: 385 H-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 420
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 252 MDNIEWLPDSIGKLSSLVSLDLSENRIVAVPAT-IGGLSSLKKLDLHANRIIELPDS--- 307
+ N++ P L +L LDLS N I + + GL L+ LDL N + L
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525
Query: 308 ------IGDLLSLVYLDLRGNQISALPVALSR-LVRLEELDLGSNNLSSLPDSI-GSLIS 359
+ L L L+L N +PV + + L L+ +DLG NNL++LP S+ + +S
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585
Query: 360 LKKLIVETN 368
LK L ++ N
Sbjct: 586 LKSLNLQKN 594
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 36/139 (25%)
Query: 375 HTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTT-MSSLSSLRELD 433
H + CS L+ L +P+ + + VL++ +N +++LP + S L LD
Sbjct: 6 HEVADCSHLK--------LTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLD 55
Query: 434 VSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD- 492
V FN + + LC + LP ML+ L++ +N++ L D
Sbjct: 56 VGFNTISKLEPELC-----------------QKLP-------MLKVLNLQHNELSQLSDK 91
Query: 493 SFRMLSRLRVLRVQENPLE 511
+F + L L + N ++
Sbjct: 92 TFAFCTNLTELHLMSNSIQ 110
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 120/277 (43%), Gaps = 56/277 (20%)
Query: 274 SENRIVAVPA---TIGGLSSLKKLDLHANRIIELP----DSIGDLLSL------------ 314
S N+I A+ + I SSLKKL+L +N+I E +IG L L
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212
Query: 315 --VYLDLRGNQISALPVALSRL-------------VRLEELDLGSNNLSSLP-DSIGSLI 358
+ L+L I L ++ S+L L LDL NNL+ + DS L
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 272
Query: 359 SLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIK 417
L+ +E N+++ L H++ ++R L + + K ++ + ++ S ++
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ-SISLASLPKIDDFSFQW---- 327
Query: 418 QLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVK-MNIGNNFADLRALPR----SIG 472
L L L++ N++ + ++ +K +++ N+F LR L S+
Sbjct: 328 --------LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379
Query: 473 NLEMLEELDISNNQI-RVLPDSFRMLSRLRVLRVQEN 508
+ L L+++ N+I ++ D+F L L VL + N
Sbjct: 380 H-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 252 MDNIEWLPDSIGKLSSLVSLDLSENRIVAVPAT-IGGLSSLKKLDLHANRIIEL-----P 305
+ N++ P L +L LDLS N I + + GL L+ LDL N + L P
Sbjct: 476 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 535
Query: 306 DS----IGDLLSLVYLDLRGNQISALPVALSR-LVRLEELDLGSNNLSSLPDSI-GSLIS 359
+ L L L+L N +PV + + L L+ +DLG NNL++LP S+ + +S
Sbjct: 536 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 595
Query: 360 LKKLIVETN 368
LK L ++ N
Sbjct: 596 LKSLNLQKN 604
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 36/139 (25%)
Query: 375 HTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTT-MSSLSSLRELD 433
H + CS L+ L +P+ + + VL++ +N +++LP + S L LD
Sbjct: 16 HEVADCSHLK--------LTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLD 65
Query: 434 VSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD- 492
V FN + + LC + LP ML+ L++ +N++ L D
Sbjct: 66 VGFNTISKLEPELC-----------------QKLP-------MLKVLNLQHNELSQLSDK 101
Query: 493 SFRMLSRLRVLRVQENPLE 511
+F + L L + N ++
Sbjct: 102 TFAFCTNLTELHLMSNSIQ 120
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 120/277 (43%), Gaps = 56/277 (20%)
Query: 274 SENRIVAVPA---TIGGLSSLKKLDLHANRIIELP----DSIGDLLSL------------ 314
S N+I A+ + I SSLKKL+L +N+I E +IG L L
Sbjct: 163 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 222
Query: 315 --VYLDLRGNQISALPVALSRL-------------VRLEELDLGSNNLSSLP-DSIGSLI 358
+ L+L I L ++ S+L L LDL NNL+ + DS L
Sbjct: 223 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 282
Query: 359 SLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIK 417
L+ +E N+++ L H++ ++R L + + K ++ + ++ S ++
Sbjct: 283 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ-SISLASLPKIDDFSFQW---- 337
Query: 418 QLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVK-MNIGNNFADLRALPR----SIG 472
L L L++ N++ + ++ +K +++ N+F LR L S+
Sbjct: 338 --------LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 389
Query: 473 NLEMLEELDISNNQI-RVLPDSFRMLSRLRVLRVQEN 508
+ L L+++ N+I ++ D+F L L VL + N
Sbjct: 390 H-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 425
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 29/131 (22%)
Query: 264 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIG-DLLSLVYLDLRGN 322
L+ + L+LS N + V A I GL S+K LDL + +I ++ G L ++YLDL N
Sbjct: 89 NLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL--N 145
Query: 323 QISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSS 382
QI+ + L+ L L+ L +G+N + NDL L S
Sbjct: 146 QITNIS-PLAGLTNLQYLSIGNN--------------------QVNDLTPL----ANLSK 180
Query: 383 LRELRVDYNRL 393
L LR D N++
Sbjct: 181 LTTLRADDNKI 191
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 271 LDLSENRIVAVPATI-GGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGNQISALP 328
LDLS N + + + L +L+ L L+ N I+ + ++ D+ L L L NQIS P
Sbjct: 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152
Query: 329 VAL----SRLVRLEELDLGSNNLSSLPDSIGSLISLKKL 363
V L ++L +L LDL SN L LP L L+KL
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLP-----LTDLQKL 186
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 264 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIG-DLLSLVYLDLRGN 322
L+ + L+LS N + V A I GL S+K LDL + +I ++ G L ++YLDL N
Sbjct: 83 NLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL--N 139
Query: 323 QISALPVALSRLVRLEELDLGSNNLSSL 350
QI+ + L+ L L+ L +G+ +S L
Sbjct: 140 QITNIS-PLAGLTNLQYLSIGNAQVSDL 166
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 311 LLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDL 370
LL + +LDL N++ ALP AL+ L LE L N L ++ D + +L L++L++ N L
Sbjct: 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRL 520
Query: 371 EE 372
++
Sbjct: 521 QQ 522
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 385 ELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELE--SV 442
L + +NRL+ALP A+ + LEVL N ++ + +++L L+EL + N L+ +
Sbjct: 467 HLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSAA 525
Query: 443 PESLCFATTLVKMNIGNN 460
+ L LV +N+ N
Sbjct: 526 IQPLVSCPRLVLLNLQGN 543
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 461 FADLRALPRSIGNLEML---------EELDISNNQIRVLPDSFRMLSRLRVLRVQENPLE 511
+AD+R L + +L +L LD+S+N++R LP + L L VL+ +N LE
Sbjct: 440 YADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 284 TIGGLSSLKKLD-LHANRIIELPDSI---GDLLSLVYLDLRGNQIS----ALPVALSRLV 335
T+ S+LK +D + A + +L +L + Y D+R ++ + L +L+
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLL 463
Query: 336 RLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK 394
+ LDL N L +LP ++ +L L+ L N LE + + L+EL + NRL+
Sbjct: 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQ 521
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 330 ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVD 389
+ L+EL L N +S L + L L++L V N L+ L C L L +D
Sbjct: 58 GMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSAC--LSRLFLD 114
Query: 390 YNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNEL 439
N L+ +++ + LE+LS+R N +K + + LS L LD+ NE+
Sbjct: 115 NNELRD-TDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEI 162
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 260 DSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 319
DS+ L +L L + N++ ++ +G LS L+ LDLH N I + L + ++DL
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITN-TGGLTRLKKVNWIDL 179
Query: 320 RGNQISALPV 329
G + PV
Sbjct: 180 TGQKCVNEPV 189
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 122/279 (43%), Gaps = 59/279 (21%)
Query: 265 LSSLVSLDLSENRI--VAVPATIGGLSSLKKLDLHANRII-----ELPDSIGDLLSLVYL 317
L +L LDLS+N+I + + + G L+SLK +D +N+I EL G LS +
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS--FF 179
Query: 318 DLRGNQI-SALPVALSRLVR------LEELDLGSNNLS-----SLPDSIG-----SLISL 360
L N + S + V + + LE LD+ N + + ++I SLI
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239
Query: 361 KKLIVETNDLEELP----HTIGQC--SSLRELRVDYNRLKALPEAVGK-IHTLEVLSVRY 413
++ + +T SS+R L + + + +L V + + L+VL++ Y
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299
Query: 414 NNIKQLPT-TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIG 472
N I ++ L +L+ L++S+N L + S + LP+
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSS-----------------NFYGLPK--- 339
Query: 473 NLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPL 510
+ +D+ N I ++ D +F+ L +L+ L +++N L
Sbjct: 340 ----VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 123/272 (45%), Gaps = 40/272 (14%)
Query: 274 SENRIVAVPAT---IGGLSSLKKLDLHANRIIELP----DSIGDLLSLVY--LDLRGNQI 324
++N+I+A+ + G SSL+KLDL +N + E +IG L +L+ L +
Sbjct: 153 AKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLT 212
Query: 325 SALPVALSRLVRLEELDLGSNNLSSLPDSIGS---LISLKKLIVETNDLEELPHTIGQCS 381
L LS ++ L L +N L + +S S +L +L + N+L H +G S
Sbjct: 213 EKLCWELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNL----HDVGNGS 267
Query: 382 -----SLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNNIKQLPTTMSS---------- 425
SLR L ++YN ++ L P + + L LS++ KQ + S
Sbjct: 268 FSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQW 327
Query: 426 LSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRALPR----SIGNLEMLEEL 480
L L L++ N + S + +L +++ F L+ L S+ + +L L
Sbjct: 328 LKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLL-TL 386
Query: 481 DISNNQI-RVLPDSFRMLSRLRVLRVQENPLE 511
+++ N I ++ +F L +LR+L + N +E
Sbjct: 387 NLTKNHISKIANGTFSWLGQLRILDLGLNEIE 418
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 22/197 (11%)
Query: 266 SSLVSLDLSENRIVAVP-ATIGGL--SSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRG 321
+S+ +L L+ N+++A +T GL ++L +LDL N + ++ + S L SL YL L
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 322 NQISAL-PVALSRLVRLEELDLG------SNNLSSLPD----SIGSLISLKKLIVETNDL 370
N I L P + L L L L S +L+S P+ S L L+ L ++ N++
Sbjct: 282 NNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNI 341
Query: 371 EEL-PHTIGQCSSLRELRVD--YNRLKALPE--AVGKIHT-LEVLSVRYNNIKQLPT-TM 423
+T SL+ L + + L+ L V H+ L L++ N+I ++ T
Sbjct: 342 PSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTF 401
Query: 424 SSLSSLRELDVSFNELE 440
S L LR LD+ NE+E
Sbjct: 402 SWLGQLRILDLGLNEIE 418
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 375 HTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELD 433
+ + CS L+ L +P+ + + VL++ +N +++LP T + S L LD
Sbjct: 6 YNVADCSHLK--------LTHIPDDLPS--NITVLNLTHNQLRRLPPTNFTRYSQLAILD 55
Query: 434 VSFNELESVPESLCFATTLVK-MNIGNN 460
FN + + LC L+K +N+ +N
Sbjct: 56 AGFNSISKLEPELCQILPLLKVLNLQHN 83
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 311 LLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDL 370
LL + +LDL N++ ALP AL+ L LE L N L ++ D + +L L++L++ N L
Sbjct: 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRL 520
Query: 371 EE 372
++
Sbjct: 521 QQ 522
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 385 ELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELE--SV 442
L + +NRL+ALP A+ + LEVL N ++ + +++L L+EL + N L+ +
Sbjct: 467 HLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSAA 525
Query: 443 PESLCFATTLVKMNIGNN 460
+ L LV +N+ N
Sbjct: 526 IQPLVSCPRLVLLNLQGN 543
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 461 FADLRALPRSIGNLEML---------EELDISNNQIRVLPDSFRMLSRLRVLRVQENPLE 511
+AD+R L + +L +L LD+S+N++R LP + L L VL+ +N LE
Sbjct: 440 YADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 284 TIGGLSSLKKLD-LHANRIIELPDSI---GDLLSLVYLDLRGNQIS----ALPVALSRLV 335
T+ S+LK +D + A + +L +L + Y D+R ++ + L +L+
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLL 463
Query: 336 RLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK 394
+ LDL N L +LP ++ +L L+ L N LE + + L+EL + NRL+
Sbjct: 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQ 521
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 36/179 (20%)
Query: 267 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDL-LSLVYLDLRGNQIS 325
SL + L+E +P + LS+L++L L+ N +GD L L+ L+ Q
Sbjct: 87 SLQNCGLTEAGCGILPGMLRSLSTLRELHLNDN-------PMGDAGLKLLCEGLQDPQ-- 137
Query: 326 ALPVALSRLVRLEELDLGSNNLSSLP-DSIGSLI----SLKKLIVETNDLEELPHTIGQC 380
RLE+L L NL++ + + S++ K+L++ NDL E P C
Sbjct: 138 ---------CRLEKLQLEYCNLTATSCEPLASVLRVKADFKELVLSNNDLHE-PGVRILC 187
Query: 381 SSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNEL 439
L++ LK LE + N K L ++S +SL+ELD+S N+L
Sbjct: 188 QGLKDSACQLESLK-----------LENCGITAANCKDLCDVVASKASLQELDLSSNKL 235
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 103/250 (41%), Gaps = 47/250 (18%)
Query: 264 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQ 323
+L++L SLD + I + I L+ L KL +N I L + +L YL N+
Sbjct: 40 QLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTL--DLSQNTNLTYLACDSNK 96
Query: 324 ISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSL 383
++ L V + L +L L+ +N L+ L S L L L N L E+ + + L
Sbjct: 97 LTNLDV--TPLTKLTYLNCDTNKLTKLDVSQNPL--LTYLNCARNTLTEID--VSHNTQL 150
Query: 384 RELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP 443
EL N+ KI L+V QL T S + + ELDVS N+L
Sbjct: 151 TELDCHLNK---------KITKLDVTPQT-----QLTTLDCSFNKITELDVSQNKL---- 192
Query: 444 ESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNN---QIRVLPDSFRMLSRL 500
L ++N N L ++I L LD S+N +I V P L++L
Sbjct: 193 --------LNRLNCDTNNITKLDLNQNI----QLTFLDCSSNKLTEIDVTP-----LTQL 235
Query: 501 RVLRVQENPL 510
NPL
Sbjct: 236 TYFDCSVNPL 245
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query: 346 NLSSLPDSIGSLISLKKLIVETN----------DLEELPHTIGQCSSLRELRVDYNRLKA 395
N + LPD + L L+ L + N D L ++ YN L+
Sbjct: 503 NXTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYXGYNNLEE 562
Query: 396 LPEAVG--KIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLV 453
P + K L +L +N ++ L +++ L +L + +N++E +PE C T V
Sbjct: 563 FPASASLQKXVKLGLLDCVHNKVRHLEAFGTNVK-LTDLKLDYNQIEEIPEDFCAFTDQV 621
Query: 454 KMNIGNNFADLRALPR--SIGNLEMLEELDISNNQI 487
+ +G + L+ +P + ++ + +D S N+I
Sbjct: 622 E-GLGFSHNKLKYIPNIFNAKSVYVXGSVDFSYNKI 656
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 243 RDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATI-GGLSSLKKLDLHANRI 301
R +N N + +IE + S + + L+ NR+ V + GL SLK L L +NRI
Sbjct: 60 RKINFSNNKITDIE--EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117
Query: 302 IELP-DSIGDLLSLVYLDLRGNQISAL-PVALSRLVRLEELDLGSN--NLSSLPDSIGSL 357
+ DS L S+ L L NQI+ + P A L L L+L +N N + +G
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEW 177
Query: 358 ISLKKLIVETNDLEELPH 375
+ KK IV N + P+
Sbjct: 178 LR-KKRIVTGNPRCQKPY 194
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 507 ENPLEVPPRNIVEMGAQAVVQYMADLVEKR 536
+NPLE PP IV+ G +AV QY + E R
Sbjct: 1 DNPLESPPPEIVKQGKEAVRQYFQSIEEAR 30
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 24/122 (19%)
Query: 234 IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLK 292
I + +G +L N M NI+ +P+ + L L L++S N + P + GLSSLK
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245
Query: 293 KLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPD 352
KL + +++ SL+ + A L L EL+L NNLSSLP
Sbjct: 246 KLWVMNSQV-----------SLIERN-----------AFDGLASLVELNLAHNNLSSLPH 283
Query: 353 SI 354
+
Sbjct: 284 DL 285
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 55/219 (25%)
Query: 360 LKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNNIKQ 418
K++ L E+P I S+ R L + N ++ + + +H LEVL + N+I+Q
Sbjct: 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113
Query: 419 L------------------------PT-TMSSLSSLRELDVSFNELESVPESLCF--ATT 451
+ P+ LS LREL + N +ES+P S F +
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP-SYAFNRVPS 172
Query: 452 LVKMNIG-------------NNFADLRALPRSIGNLE---------MLEELDISNNQI-R 488
L+++++G +L+ L + N++ LEEL++S N
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE 232
Query: 489 VLPDSFRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVVQ 527
+ P SF LS L+ L V + + + RN + G ++V+
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFD-GLASLVE 270
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 102/245 (41%), Gaps = 44/245 (17%)
Query: 267 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISA 326
SL + L+E +P+T+ L +L++L L N L D+ LL LD
Sbjct: 87 SLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDN---PLGDAGLRLLCEGLLD-------- 135
Query: 327 LPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRE 385
P ++LE L + + L + + +LK+L V ND+ E +GQ
Sbjct: 136 -PQCHLEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQ------ 188
Query: 386 LRVDYNRLKALPEAVGKIHTL--EVLSVRYNNIKQLPTTMSSLSSLRELDVSFNEL---- 439
L ++ ++ TL E + N K L ++S +SLRELD+ N L
Sbjct: 189 ---------GLADSACQLETLRLENCGLTPANCKDLCGIVASQASLRELDLGSNGLGDAG 239
Query: 440 --ESVPESLCFAT---TLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQI-----RV 489
E P L A+ TL + R L R + E L+EL ++ N++ R+
Sbjct: 240 IAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVLQAKETLKELSLAGNKLGDEGARL 299
Query: 490 LPDSF 494
L +S
Sbjct: 300 LCESL 304
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 7/124 (5%)
Query: 393 LKALPEAVGKIHTLEVLSVRYNNIKQLPTT--MSSLSSLRELDVSFNELESV-PESLCFA 449
LK +P + +HT E+L + N + ++ + L L +L++ N+L + P + A
Sbjct: 20 LKEIPRDI-PLHTTELL-LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77
Query: 450 TTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR-VLPDSFRMLSRLRVLRVQEN 508
+ + ++ +G N + +G L L+ L++ +NQI V+P SF L+ L L + N
Sbjct: 78 SHIQELQLGENKIKEISNKMFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Query: 509 PLEV 512
P
Sbjct: 137 PFNC 140
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 18/120 (15%)
Query: 311 LLSLVYLDLRGNQISALPVALSRLVRLEEL------DLGSNNLSSLPDSIGSLISLKKL- 363
L ++ YL ++G ++ +PV +V+LEEL D ++ + + +G++ ++ +
Sbjct: 103 LETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVT 162
Query: 364 -IVETNDLEELPH-----TIGQCS-SLRELRVDYNRLKAL----PEAVGKIHTLEVLSVR 412
IV+ + E L H TIG+ SL +L VDY A P+ VG + + + +R
Sbjct: 163 RIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIR 222
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 267 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISA 326
+L L+L N I V + + LK LDL +N++ + + ++ LR N++
Sbjct: 170 TLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228
Query: 327 LPVALSRLVRLEELDLGSNNL 347
+ AL LE DL N
Sbjct: 229 IEKALRFSQNLEHFDLRGNGF 249
>pdb|3JQH|A Chain A, Structure Of The Neck Region Of The Glycan-Binding
Receptor Dc-Signr
Length = 167
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 52/128 (40%)
Query: 276 NRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLV 335
+ + A +G L KL + L ++G+L L +++ L A+ L
Sbjct: 14 QELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELP 73
Query: 336 RLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKA 395
+L L+ L ++G L KL +L EL +G+ +L+ Y L
Sbjct: 74 EKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQ 133
Query: 396 LPEAVGKI 403
L AVG++
Sbjct: 134 LKAAVGEL 141
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 422 TMSSLSSLRELDVSFNELESVPESLCFAT----TLVKMNIGNNFADLRALPRSIGNLEML 477
S L ++++S N++ V E+ F+ +++ NN L P + NL L
Sbjct: 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL--LYINPEAFQNLPNL 106
Query: 478 EELDISNNQIRVLPDSFRMLSRLRV-LRVQEN 508
+ L ISN I+ LPD ++ S +V L +Q+N
Sbjct: 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 267 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISA 326
+L L+L N I V + + LK LDL +N++ + + ++ LR N++
Sbjct: 170 TLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228
Query: 327 LPVALSRLVRLEELDLGSNNL 347
+ AL LE DL N
Sbjct: 229 IEKALRFSQNLEHFDLRGNGF 249
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 316 YLDLRGNQISALPVALSRLVRLEEL------DLGSNNLSSLPDSIGSLISLKKL--IVET 367
YL +G ++ +PV +V+LEEL D ++ + + +G++ ++ + IV+
Sbjct: 108 YLSXKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIXAANNEVGTIQPVEDVTRIVKK 167
Query: 368 NDLEELPH-----TIGQCS-SLRELRVDYNRLKAL----PEAVGKIHTLEVLSVR 412
+ E L H TIG+ SL +L VDY A P+ VG + + + +R
Sbjct: 168 KNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIR 222
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 422 TMSSLSSLRELDVSFNELESVPESLCFAT----TLVKMNIGNNFADLRALPRSIGNLEML 477
S L ++++S N++ V E+ F+ +++ NN L P + NL L
Sbjct: 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL--LYINPEAFQNLPNL 106
Query: 478 EELDISNNQIRVLPDSFRMLSRLRV-LRVQEN 508
+ L ISN I+ LPD ++ S +V L +Q+N
Sbjct: 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,638,800
Number of Sequences: 62578
Number of extensions: 484354
Number of successful extensions: 1793
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 1156
Number of HSP's gapped (non-prelim): 325
length of query: 571
length of database: 14,973,337
effective HSP length: 104
effective length of query: 467
effective length of database: 8,465,225
effective search space: 3953260075
effective search space used: 3953260075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)