Query 008287
Match_columns 571
No_of_seqs 521 out of 4569
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 21:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.6E-28 1.4E-32 284.0 21.7 271 239-511 139-441 (968)
2 KOG0444 Cytoskeletal regulator 100.0 5.9E-31 1.3E-35 272.0 -5.2 292 234-526 72-367 (1255)
3 KOG0472 Leucine-rich repeat pr 99.9 4.7E-30 1E-34 254.1 -7.9 285 242-533 47-332 (565)
4 KOG4194 Membrane glycoprotein 99.9 3.8E-28 8.1E-33 250.2 3.9 282 236-519 145-437 (873)
5 KOG0444 Cytoskeletal regulator 99.9 5.8E-29 1.3E-33 257.3 -5.4 291 238-533 30-328 (1255)
6 KOG0472 Leucine-rich repeat pr 99.9 2.2E-28 4.8E-33 242.3 -2.8 287 239-532 182-562 (565)
7 PLN00113 leucine-rich repeat r 99.9 1.6E-25 3.6E-30 263.7 20.7 275 237-514 161-468 (968)
8 KOG4194 Membrane glycoprotein 99.9 9.4E-27 2E-31 239.9 4.5 267 239-510 101-377 (873)
9 PRK15387 E3 ubiquitin-protein 99.9 3.3E-22 7.1E-27 222.6 16.6 242 240-516 222-463 (788)
10 PRK15370 E3 ubiquitin-protein 99.9 3.9E-22 8.4E-27 223.1 15.4 247 240-511 178-428 (754)
11 PRK15370 E3 ubiquitin-protein 99.8 9.7E-21 2.1E-25 212.0 15.2 230 266-517 178-407 (754)
12 PRK15387 E3 ubiquitin-protein 99.8 4.7E-20 1E-24 205.4 17.3 244 240-520 201-444 (788)
13 KOG0618 Serine/threonine phosp 99.8 4.5E-22 9.8E-27 215.5 -2.9 281 241-527 46-436 (1081)
14 PLN03210 Resistant to P. syrin 99.8 6.3E-19 1.4E-23 209.5 21.8 257 241-509 590-904 (1153)
15 PLN03210 Resistant to P. syrin 99.8 6.4E-19 1.4E-23 209.5 21.6 241 240-490 611-909 (1153)
16 KOG4237 Extracellular matrix p 99.8 2.1E-21 4.5E-26 192.8 -1.0 294 241-549 68-387 (498)
17 KOG0618 Serine/threonine phosp 99.8 2.7E-21 5.8E-26 209.5 -1.5 241 267-511 242-489 (1081)
18 KOG0617 Ras suppressor protein 99.8 1.2E-21 2.6E-26 174.2 -4.1 200 308-532 29-233 (264)
19 KOG0617 Ras suppressor protein 99.8 5E-21 1.1E-25 170.3 -4.4 165 262-426 29-195 (264)
20 cd00116 LRR_RI Leucine-rich re 99.8 6E-19 1.3E-23 181.3 5.4 265 245-510 3-319 (319)
21 cd00116 LRR_RI Leucine-rich re 99.7 3.6E-17 7.7E-22 168.2 5.7 245 270-514 2-294 (319)
22 KOG0532 Leucine-rich repeat (L 99.6 7E-18 1.5E-22 174.7 -4.4 197 311-534 74-270 (722)
23 KOG4237 Extracellular matrix p 99.6 1E-16 2.3E-21 159.6 -3.5 263 254-519 57-343 (498)
24 KOG0532 Leucine-rich repeat (L 99.6 1.4E-16 3.1E-21 165.1 -3.1 183 263-447 72-254 (722)
25 COG4886 Leucine-rich repeat (L 99.5 2.6E-14 5.6E-19 151.8 8.1 260 244-511 97-358 (394)
26 COG4886 Leucine-rich repeat (L 99.5 1.1E-13 2.4E-18 147.0 8.3 194 293-489 97-291 (394)
27 KOG3207 Beta-tubulin folding c 99.4 2.6E-14 5.7E-19 144.5 -1.9 212 286-515 118-343 (505)
28 KOG1259 Nischarin, modulator o 99.4 2E-13 4.3E-18 131.9 1.6 134 377-514 280-415 (490)
29 KOG1259 Nischarin, modulator o 99.3 2.7E-13 5.9E-18 130.9 1.1 169 333-531 282-455 (490)
30 KOG1909 Ran GTPase-activating 99.3 8.2E-13 1.8E-17 130.5 3.8 241 261-511 25-311 (382)
31 KOG4658 Apoptotic ATPase [Sign 99.3 3.6E-12 7.8E-17 145.5 5.0 230 207-441 487-731 (889)
32 PF14580 LRR_9: Leucine-rich r 99.2 5.5E-12 1.2E-16 117.0 4.5 102 290-393 20-125 (175)
33 PF14580 LRR_9: Leucine-rich r 99.2 6.7E-12 1.4E-16 116.4 4.7 104 241-348 20-126 (175)
34 KOG1909 Ran GTPase-activating 99.2 1E-12 2.2E-17 129.9 -2.0 233 236-488 26-311 (382)
35 KOG3207 Beta-tubulin folding c 99.2 3.2E-12 7E-17 129.5 1.2 203 237-440 118-339 (505)
36 KOG0531 Protein phosphatase 1, 99.2 1.5E-12 3.2E-17 139.1 -1.4 223 262-514 91-321 (414)
37 KOG1859 Leucine-rich repeat pr 99.1 6.9E-13 1.5E-17 141.2 -7.8 179 380-567 163-345 (1096)
38 KOG0531 Protein phosphatase 1, 99.1 6.1E-12 1.3E-16 134.3 -2.2 214 291-511 74-290 (414)
39 KOG4658 Apoptotic ATPase [Sign 99.1 7.4E-11 1.6E-15 134.9 5.2 224 235-461 540-781 (889)
40 KOG1859 Leucine-rich repeat pr 98.7 1.9E-10 4.1E-15 122.9 -8.5 129 289-419 164-294 (1096)
41 COG5238 RNA1 Ran GTPase-activa 98.6 1.1E-08 2.4E-13 98.2 2.0 133 308-440 88-255 (388)
42 KOG2982 Uncharacterized conser 98.6 1.5E-08 3.2E-13 98.6 1.8 201 241-441 46-263 (418)
43 KOG2120 SCF ubiquitin ligase, 98.6 1.6E-09 3.5E-14 105.2 -5.0 149 313-461 186-349 (419)
44 KOG2982 Uncharacterized conser 98.5 2.1E-08 4.5E-13 97.6 1.0 199 290-488 46-262 (418)
45 KOG4341 F-box protein containi 98.5 3.4E-09 7.4E-14 107.3 -4.7 269 240-509 138-437 (483)
46 PLN03150 hypothetical protein; 98.5 3.7E-07 8E-12 102.3 9.8 104 290-393 419-527 (623)
47 COG5238 RNA1 Ran GTPase-activa 98.5 4.4E-08 9.6E-13 94.2 2.0 226 288-513 29-318 (388)
48 PLN03150 hypothetical protein; 98.5 3E-07 6.6E-12 103.0 9.0 108 405-513 419-530 (623)
49 PF13855 LRR_8: Leucine rich r 98.5 9.9E-08 2.1E-12 72.7 3.4 57 267-323 2-60 (61)
50 PF13855 LRR_8: Leucine rich r 98.4 2E-07 4.2E-12 71.1 3.1 59 289-347 1-61 (61)
51 KOG4579 Leucine-rich repeat (L 98.4 2.6E-08 5.6E-13 86.5 -2.1 81 290-370 54-135 (177)
52 KOG4579 Leucine-rich repeat (L 98.4 2.5E-08 5.5E-13 86.5 -2.4 110 290-399 28-141 (177)
53 KOG2120 SCF ubiquitin ligase, 98.3 2.6E-08 5.5E-13 97.0 -4.7 80 268-347 187-272 (419)
54 PRK15386 type III secretion pr 98.2 4E-06 8.6E-11 87.3 9.1 128 240-391 52-187 (426)
55 KOG1644 U2-associated snRNP A' 98.2 3.1E-06 6.7E-11 78.5 5.7 102 312-414 42-150 (233)
56 PRK15386 type III secretion pr 98.1 8.2E-06 1.8E-10 85.0 9.3 133 285-438 48-188 (426)
57 KOG1644 U2-associated snRNP A' 98.1 4.8E-06 1.1E-10 77.2 5.9 104 242-349 21-127 (233)
58 KOG3665 ZYG-1-like serine/thre 98.0 2.3E-06 5E-11 96.0 2.7 129 289-418 122-264 (699)
59 PF12799 LRR_4: Leucine Rich r 98.0 7.3E-06 1.6E-10 57.8 4.2 38 290-327 2-39 (44)
60 KOG3665 ZYG-1-like serine/thre 98.0 5.7E-06 1.2E-10 92.9 4.6 132 239-371 121-263 (699)
61 PF12799 LRR_4: Leucine Rich r 98.0 1E-05 2.3E-10 57.0 4.0 40 312-351 1-40 (44)
62 KOG4341 F-box protein containi 97.9 4.6E-07 9.9E-12 92.2 -5.2 270 238-507 162-461 (483)
63 KOG2123 Uncharacterized conser 97.4 1.2E-05 2.5E-10 78.0 -3.2 80 239-323 18-99 (388)
64 KOG2739 Leucine-rich acidic nu 97.3 9.6E-05 2.1E-09 71.5 2.2 102 381-506 43-151 (260)
65 KOG2123 Uncharacterized conser 97.2 2.6E-05 5.6E-10 75.7 -3.6 99 264-364 17-123 (388)
66 KOG2739 Leucine-rich acidic nu 97.2 0.00025 5.4E-09 68.7 2.8 85 264-349 41-130 (260)
67 KOG1947 Leucine rich repeat pr 96.9 0.00019 4.2E-09 77.8 -0.6 168 264-440 186-375 (482)
68 KOG4308 LRR-containing protein 96.8 1.2E-05 2.7E-10 86.5 -10.8 203 290-512 88-332 (478)
69 KOG4308 LRR-containing protein 96.7 2.3E-05 5E-10 84.4 -9.1 175 267-441 88-304 (478)
70 PF13306 LRR_5: Leucine rich r 96.7 0.0045 9.8E-08 54.2 6.8 101 261-366 7-111 (129)
71 PF13306 LRR_5: Leucine rich r 96.5 0.0088 1.9E-07 52.3 7.2 116 237-360 9-128 (129)
72 KOG1947 Leucine rich repeat pr 96.5 0.00051 1.1E-08 74.5 -0.9 107 287-393 186-307 (482)
73 PF00560 LRR_1: Leucine Rich R 94.9 0.01 2.2E-07 35.0 0.7 21 476-496 1-21 (22)
74 KOG0473 Leucine-rich repeat pr 94.3 0.00098 2.1E-08 63.4 -7.1 87 262-348 38-124 (326)
75 PF00560 LRR_1: Leucine Rich R 94.3 0.014 3.1E-07 34.3 0.3 15 314-328 2-16 (22)
76 KOG0473 Leucine-rich repeat pr 93.4 0.0022 4.7E-08 61.2 -6.6 87 236-325 38-124 (326)
77 PF13504 LRR_7: Leucine rich r 93.4 0.052 1.1E-06 29.7 1.4 17 475-491 1-17 (17)
78 PF13504 LRR_7: Leucine rich r 92.5 0.079 1.7E-06 29.0 1.4 13 314-326 3-15 (17)
79 TIGR00864 PCC polycystin catio 88.6 0.36 7.8E-06 61.1 3.7 36 481-516 1-37 (2740)
80 smart00369 LRR_TYP Leucine-ric 88.5 0.39 8.4E-06 29.2 2.1 20 474-493 1-20 (26)
81 smart00370 LRR Leucine-rich re 88.5 0.39 8.4E-06 29.2 2.1 20 474-493 1-20 (26)
82 KOG4242 Predicted myosin-I-bin 88.1 2.8 6.2E-05 44.4 9.2 44 471-514 436-484 (553)
83 smart00370 LRR Leucine-rich re 87.0 0.57 1.2E-05 28.5 2.2 18 312-329 2-19 (26)
84 smart00369 LRR_TYP Leucine-ric 87.0 0.57 1.2E-05 28.5 2.2 18 312-329 2-19 (26)
85 KOG3864 Uncharacterized conser 81.7 0.41 8.9E-06 45.1 -0.3 37 474-510 150-188 (221)
86 smart00364 LRR_BAC Leucine-ric 78.7 1.2 2.7E-05 27.3 1.2 18 475-492 2-19 (26)
87 KOG1086 Cytosolic sorting prot 76.3 2.7 5.9E-05 43.7 3.6 37 15-55 178-214 (594)
88 KOG2129 Uncharacterized conser 74.4 11 0.00024 39.1 7.3 24 30-53 261-284 (552)
89 smart00365 LRR_SD22 Leucine-ri 69.5 3.6 7.7E-05 25.3 1.6 17 474-490 1-17 (26)
90 KOG3763 mRNA export factor TAP 68.8 2.4 5.1E-05 45.9 1.3 38 239-276 217-254 (585)
91 PF10041 DUF2277: Uncharacteri 67.2 5.4 0.00012 31.1 2.6 28 7-34 44-77 (78)
92 PF13516 LRR_6: Leucine Rich r 66.9 2.5 5.4E-05 25.0 0.6 14 475-488 2-15 (24)
93 KOG3864 Uncharacterized conser 65.2 1.7 3.7E-05 41.1 -0.6 71 225-298 113-185 (221)
94 PF06112 Herpes_capsid: Gammah 57.4 16 0.00034 32.6 4.0 14 68-81 40-53 (147)
95 PF12269 zf-CpG_bind_C: CpG bi 57.2 21 0.00046 34.7 5.3 34 83-116 37-70 (236)
96 KOG3763 mRNA export factor TAP 56.0 6.6 0.00014 42.6 1.8 62 263-325 215-283 (585)
97 PF14837 INTS5_N: Integrator c 53.3 28 0.00061 33.3 5.4 69 7-80 23-95 (213)
98 PF12205 GIT1_C: G protein-cou 48.4 66 0.0014 28.0 6.4 65 3-76 42-108 (123)
99 smart00368 LRR_RI Leucine rich 47.9 14 0.0003 22.9 1.7 13 499-511 3-15 (28)
100 TIGR03574 selen_PSTK L-seryl-t 47.7 1E+02 0.0022 30.2 8.7 91 7-105 155-248 (249)
101 smart00367 LRR_CC Leucine-rich 46.9 13 0.00027 22.5 1.3 14 475-488 2-16 (26)
102 COG0497 RecN ATPase involved i 46.4 96 0.0021 34.3 8.8 89 3-109 273-363 (557)
103 PF04971 Lysis_S: Lysis protei 44.6 10 0.00023 29.0 0.8 14 77-90 53-66 (68)
104 KOG4339 RPEL repeat-containing 40.8 30 0.00065 37.2 3.8 42 13-54 410-452 (533)
105 KOG4242 Predicted myosin-I-bin 37.6 1.3E+02 0.0028 32.5 7.7 59 429-487 415-480 (553)
106 PF10642 Tom5: Mitochondrial i 35.5 31 0.00066 24.8 2.0 15 23-37 6-20 (49)
107 COG3028 Uncharacterized protei 34.6 78 0.0017 29.0 4.9 49 9-72 131-179 (187)
108 PRK05255 hypothetical protein; 34.4 96 0.0021 28.7 5.6 50 8-72 120-169 (171)
109 PF08944 p47_phox_C: NADPH oxi 34.4 17 0.00037 26.9 0.5 12 21-32 30-41 (58)
110 PF02252 PA28_beta: Proteasome 34.4 2.5E+02 0.0055 25.4 8.2 72 37-116 71-142 (150)
111 KOG2456 Aldehyde dehydrogenase 33.8 1.6E+02 0.0035 31.0 7.6 70 5-74 1-73 (477)
112 TIGR02774 rexB_recomb ATP-depe 33.0 1.6E+02 0.0035 35.7 8.8 85 22-107 74-159 (1076)
113 PF11418 Scaffolding_pro: Phi2 31.6 70 0.0015 25.6 3.6 39 27-82 3-41 (97)
114 PF04043 PMEI: Plant invertase 31.6 1.1E+02 0.0025 26.9 5.7 68 2-73 76-143 (152)
115 PF13887 MRF_C1: Myelin gene r 31.6 26 0.00057 23.1 1.0 23 8-32 12-34 (36)
116 COG5423 Predicted metal-bindin 30.3 68 0.0015 28.7 3.7 43 54-96 48-99 (167)
117 PHA01812 hypothetical protein 29.8 80 0.0017 25.3 3.7 44 67-110 6-49 (122)
118 KOG2856 Adaptor protein PACSIN 29.5 1.1E+02 0.0024 31.6 5.5 44 28-71 141-184 (472)
119 PF13945 NST1: Salt tolerance 28.9 2.3E+02 0.0049 26.8 7.1 73 29-110 102-175 (190)
120 KOG1099 SAM-dependent methyltr 28.4 43 0.00094 32.4 2.3 42 74-115 9-53 (294)
121 KOG2675 Adenylate cyclase-asso 25.9 6.2E+02 0.014 27.0 10.2 55 30-86 74-129 (480)
122 PRK13770 histidinol dehydrogen 25.3 1.2E+02 0.0027 32.1 5.2 25 60-84 68-92 (416)
123 PRK10363 cpxP periplasmic repr 25.3 4.6E+02 0.01 24.1 8.3 76 9-87 56-131 (166)
124 PRK10455 periplasmic protein; 24.8 1.7E+02 0.0036 26.8 5.5 77 9-88 62-138 (161)
125 PF11598 COMP: Cartilage oligo 24.7 1.1E+02 0.0024 21.6 3.2 23 64-91 12-34 (45)
126 PF15151 RGCC: Response gene t 23.1 1.6E+02 0.0035 24.9 4.4 50 61-117 17-66 (121)
127 PF12127 YdfA_immunity: SigmaW 23.1 1.6E+02 0.0035 29.3 5.1 50 22-80 225-274 (316)
128 COG5552 Uncharacterized conser 22.6 1E+02 0.0022 24.0 3.0 30 24-53 35-64 (88)
129 PRK12447 histidinol dehydrogen 21.7 1.7E+02 0.0038 31.2 5.5 26 60-85 69-94 (426)
130 PF05549 Allexi_40kDa: Allexiv 21.4 3.4E+02 0.0074 26.7 6.9 50 60-109 92-142 (271)
131 PRK00877 hisD bifunctional his 21.1 1.7E+02 0.0036 31.3 5.2 26 60-85 76-101 (425)
132 cd06572 Histidinol_dh Histidin 20.7 1.8E+02 0.0039 30.7 5.4 28 59-86 47-74 (390)
133 cd07313 terB_like_2 tellurium 20.4 4.4E+02 0.0096 21.5 6.9 57 25-87 15-74 (104)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=6.6e-28 Score=283.99 Aligned_cols=271 Identities=30% Similarity=0.510 Sum_probs=156.5
Q ss_pred CCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCC-cccchhcCCCCccEEEcccCCCC-CcchhhcCCCCccE
Q 008287 239 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIV-AVPATIGGLSSLKKLDLHANRII-ELPDSIGDLLSLVY 316 (571)
Q Consensus 239 ~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~ 316 (571)
+++|+.|+|++|.+.+ .+|..+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.+. .+|..++++++|++
T Consensus 139 l~~L~~L~Ls~n~~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 139 IPNLETLDLSNNMLSG--EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cCCCCEEECcCCcccc--cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 4455555555554432 23555666666666666666655 44556666666666666666665 44566666666666
Q ss_pred EEccCCCCC-CCchhhcCCCCCCEEEccCCCCC-CCchhhcCCcCCcEEeccCCCCC-CCccccCCCCCCcEEEccCCCC
Q 008287 317 LDLRGNQIS-ALPVALSRLVRLEELDLGSNNLS-SLPDSIGSLISLKKLIVETNDLE-ELPHTIGQCSSLRELRVDYNRL 393 (571)
Q Consensus 317 L~Ls~n~i~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~Ls~n~l 393 (571)
|+|++|.+. .+|..++++++|++|++++|.+. .+|..++.+++|+.|++++|.+. .+|..+..+++|++|++++|.+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 666666665 45556666666666666666655 45556666666666666666654 3455566666666666666665
Q ss_pred C-CCccccccCCccceeecccccCCc-CccccCCCCCccEEEecCCCCC-CCchhhhcCCCCcEEEccCCccC-------
Q 008287 394 K-ALPEAVGKIHTLEVLSVRYNNIKQ-LPTTMSSLSSLRELDVSFNELE-SVPESLCFATTLVKMNIGNNFAD------- 463 (571)
Q Consensus 394 ~-~l~~~l~~l~~L~~L~L~~n~i~~-lp~~l~~l~~L~~L~Ls~n~l~-~i~~~l~~~~~L~~L~L~~n~~~------- 463 (571)
. .+|..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|...
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 4 445555566666666666665554 4455556666666666666655 34555555556666666555321
Q ss_pred ----------------CCccchhccCCCCccEEecccCCCC-ccchhhcCCCCCcEEEcccCCCC
Q 008287 464 ----------------LRALPRSIGNLEMLEELDISNNQIR-VLPDSFRMLSRLRVLRVQENPLE 511 (571)
Q Consensus 464 ----------------l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 511 (571)
...+|..++.+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+.
T Consensus 377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441 (968)
T ss_pred hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCccc
Confidence 0123334444455555555555444 33444555555555555555554
No 2
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=5.9e-31 Score=271.96 Aligned_cols=292 Identities=28% Similarity=0.441 Sum_probs=242.1
Q ss_pred ccccCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchh-hcCCC
Q 008287 234 IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDS-IGDLL 312 (571)
Q Consensus 234 ~~~~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~ 312 (571)
.+++.++.||.+.++.|++...+ +|..+..+..|+.|||++|++..+|..+..-+++-+|+|++|+|.++|.. +-+++
T Consensus 72 GELs~Lp~LRsv~~R~N~LKnsG-iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNNLKNSG-IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT 150 (1255)
T ss_pred hhhccchhhHHHhhhccccccCC-CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence 45778889999999999888754 78889999999999999999999999999999999999999999999885 46899
Q ss_pred CccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCc-hhhcCCcCCcEEeccCCCCC--CCccccCCCCCCcEEEcc
Q 008287 313 SLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLE--ELPHTIGQCSSLRELRVD 389 (571)
Q Consensus 313 ~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~Ls 389 (571)
.|-+|||++|++..+|+.+.++..|++|+|++|.+..+. ..+.++++|+.|.+++++-+ .+|..+..+.+|..+|++
T Consensus 151 DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 999999999999999999999999999999999776321 23556777888888877544 778888888888888888
Q ss_pred CCCCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccch
Q 008287 390 YNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPR 469 (571)
Q Consensus 390 ~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~ 469 (571)
.|.+..+|+.+.++.+|+.|+|++|.|+.+.-......+|+.|+|+.|+++.+|+.++.++.|+.|.+.+|..+...+|.
T Consensus 231 ~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 231 ENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred ccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc
Confidence 88888888888888888888888888888766667777888888888888888888888888888888888777788888
Q ss_pred hccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCCCChHHHhcCHHHHH
Q 008287 470 SIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVV 526 (571)
Q Consensus 470 ~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~ 526 (571)
.++.+.+|+.+..++|++.-+|+++..+..|+.|.|+.|.+-..|..|--+....++
T Consensus 311 GIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vL 367 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVL 367 (1255)
T ss_pred chhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCccee
Confidence 888877777777777777777777777777777777777776666665544444443
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=4.7e-30 Score=254.10 Aligned_cols=285 Identities=36% Similarity=0.592 Sum_probs=266.4
Q ss_pred CcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccC
Q 008287 242 TRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRG 321 (571)
Q Consensus 242 l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~ 321 (571)
+..|.+++|.+.. +.+.+..+..|++|++.+|.+..+|+.++.+..++.|+.++|++..+|..++.+.+|..|+++.
T Consensus 47 l~~lils~N~l~~---l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLEV---LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchhh---ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 4556677775544 3467788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccccc
Q 008287 322 NQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVG 401 (571)
Q Consensus 322 n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~ 401 (571)
|.+..+|+.++.+-.|+.++..+|++.++|+.++.+.+|..+++.+|.+..+|+..-.++.|++||+..|-++.+|..++
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg 203 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELG 203 (565)
T ss_pred cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhc
Confidence 99999999999999999999999999999999999999999999999999998877779999999999999999999999
Q ss_pred cCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhh-cCCCCcEEEccCCccCCCccchhccCCCCccEE
Q 008287 402 KIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLC-FATTLVKMNIGNNFADLRALPRSIGNLEMLEEL 480 (571)
Q Consensus 402 ~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~-~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L 480 (571)
.+.+|..|+|+.|++..+| .|.+|..|++|+++.|.|+.+|+..+ +++++..|++..| .+..+|+.+..+.+|+.|
T Consensus 204 ~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN--klke~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN--KLKEVPDEICLLRSLERL 280 (565)
T ss_pred chhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc--ccccCchHHHHhhhhhhh
Confidence 9999999999999999998 89999999999999999999998877 8999999999999 688999999999999999
Q ss_pred ecccCCCCccchhhcCCCCCcEEEcccCCCCCCChHHHhcCHHHHHHHHHHHh
Q 008287 481 DISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVVQYMADLV 533 (571)
Q Consensus 481 ~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~ 533 (571)
|+++|.|+.+|..++++ +|+.|.+.|||+...-+.+...|.++++.|++...
T Consensus 281 DlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~ 332 (565)
T KOG0472|consen 281 DLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKI 332 (565)
T ss_pred cccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhh
Confidence 99999999999999999 99999999999999999999999999999998843
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=3.8e-28 Score=250.16 Aligned_cols=282 Identities=28% Similarity=0.407 Sum_probs=203.8
Q ss_pred ccCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCccc-chhcCCCCccEEEcccCCCCCcch-hhcCCCC
Q 008287 236 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLS 313 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~ 313 (571)
++.++.+|.|+|+.|.+..+. ...|..-.+|++|+|++|+|+++- +.|.++.+|..|.|+.|+++.+|. .|.+|++
T Consensus 145 L~~l~alrslDLSrN~is~i~--~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 145 LSALPALRSLDLSRNLISEIP--KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HHhHhhhhhhhhhhchhhccc--CCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence 345556677777776666554 234455566777777777777663 356667777777777777777755 4555777
Q ss_pred ccEEEccCCCCCCC-chhhcCCCCCCEEEccCCCCCCCchh-hcCCcCCcEEeccCCCCCCCc-cccCCCCCCcEEEccC
Q 008287 314 LVYLDLRGNQISAL-PVALSRLVRLEELDLGSNNLSSLPDS-IGSLISLKKLIVETNDLEELP-HTIGQCSSLRELRVDY 390 (571)
Q Consensus 314 L~~L~Ls~n~i~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~Ls~ 390 (571)
|+.|+|..|+|..+ .-.|.++++|+.|.+..|++..+.++ |..+.++++|+|..|.+..+- .++.+++.|+.|++++
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 77777777776654 22566777777777777777766654 667778888888888777663 3567788888888888
Q ss_pred CCCCCC-ccccccCCccceeecccccCCcCc-cccCCCCCccEEEecCCCCCCCch-hhhcCCCCcEEEccCCccC--CC
Q 008287 391 NRLKAL-PEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIGNNFAD--LR 465 (571)
Q Consensus 391 n~l~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~Ls~n~l~~i~~-~l~~~~~L~~L~L~~n~~~--l~ 465 (571)
|.+..+ ++.+...++|+.|+|++|+|..++ ..|..+..|++|.|++|.++.+-+ .+.++.+|++|+|.+|... ++
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 888755 366777788888888888888875 467778888888888888876654 4567889999999988321 11
Q ss_pred ccchhccCCCCccEEecccCCCCccch-hhcCCCCCcEEEcccCCCCCCChHHHh
Q 008287 466 ALPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRNIVE 519 (571)
Q Consensus 466 ~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~~~ 519 (571)
.-...+..|++|+.|+|.+|+|+.+|. +|..++.|+.|+|.+|++.....+.|+
T Consensus 383 Daa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred cchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccc
Confidence 122346779999999999999999985 899999999999999998665555544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=5.8e-29 Score=257.29 Aligned_cols=291 Identities=28% Similarity=0.422 Sum_probs=209.9
Q ss_pred CCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCC--CcchhhcCCCCcc
Q 008287 238 SKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRII--ELPDSIGDLLSLV 315 (571)
Q Consensus 238 ~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~ 315 (571)
.++.++.|.|...++. .+|+.++.|.+|+.|.+.+|++..+.+.+..++.|+.+.+..|++. .+|..+.++..|.
T Consensus 30 qMt~~~WLkLnrt~L~---~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt 106 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLE---QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT 106 (1255)
T ss_pred HhhheeEEEechhhhh---hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccce
Confidence 4556777777776443 3577888888888888888888887777888888888888888775 5677788888888
Q ss_pred EEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchh-hcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCC
Q 008287 316 YLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDS-IGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK 394 (571)
Q Consensus 316 ~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~ 394 (571)
.|||+.|+++.+|..+...+++-.|+|++|+|.+||.. +-+++.|-.|+|++|.+..+|+.+..+..|++|+|++|.+.
T Consensus 107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh
Confidence 88888888888888888888888888888888888866 44677788888888888888888888888888888888765
Q ss_pred CCc-cccccCCccceeecccccC--CcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhc
Q 008287 395 ALP-EAVGKIHTLEVLSVRYNNI--KQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSI 471 (571)
Q Consensus 395 ~l~-~~l~~l~~L~~L~L~~n~i--~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l 471 (571)
.+. ..+..+++|++|.+++.+- ..+|..+..+.+|..+||+.|.+..+|+.+..+++|+.|+|++| .+..+....
T Consensus 187 hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N--~iteL~~~~ 264 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN--KITELNMTE 264 (1255)
T ss_pred HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC--ceeeeeccH
Confidence 321 2334566677777776643 34677777777777777777777777777777777777777777 344444445
Q ss_pred cCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCC--CCChHHHhcCHHHHHHHHHHHh
Q 008287 472 GNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLE--VPPRNIVEMGAQAVVQYMADLV 533 (571)
Q Consensus 472 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~--~~~~~~~~~~~~~~~~~~~~~~ 533 (571)
+...+|+.|+|+.|+++.+|+++..++.|+.|++.+|+++ ..|..|-.++..+++....+..
T Consensus 265 ~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred HHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 5556677777777777777777777777777777777653 4455665566665555444433
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=2.2e-28 Score=242.30 Aligned_cols=287 Identities=34% Similarity=0.523 Sum_probs=208.8
Q ss_pred CCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhc-CCCCccEE
Q 008287 239 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIG-DLLSLVYL 317 (571)
Q Consensus 239 ~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L 317 (571)
++.++.|+...|.+ +.+|+.++.+.+|..|+|..|.|..+| .|.++..|+.|+++.|.|..+|...+ ++++|.+|
T Consensus 182 m~~L~~ld~~~N~L---~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLL---ETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHhcccchhhh---hcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceee
Confidence 45577777777744 456888999999999999999999888 58889999999999999998887665 89999999
Q ss_pred EccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCC------------------------
Q 008287 318 DLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEEL------------------------ 373 (571)
Q Consensus 318 ~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l------------------------ 373 (571)
|++.|+++.+|..+..+.+|..||+++|.|+.+|-.++.+ +|+.|-+.||.+..+
T Consensus 258 DLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 258 DLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred eccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999999999999 999998888865100
Q ss_pred --------------cc----ccCCCCC--------------------------CcEEEccCCCCCCCccc----------
Q 008287 374 --------------PH----TIGQCSS--------------------------LRELRVDYNRLKALPEA---------- 399 (571)
Q Consensus 374 --------------~~----~l~~l~~--------------------------L~~L~Ls~n~l~~l~~~---------- 399 (571)
+. .....-+ ...++++.|++..+|..
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~ 416 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTD 416 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHH
Confidence 00 0000112 33445555544433332
Q ss_pred --------------cccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCC
Q 008287 400 --------------VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLR 465 (571)
Q Consensus 400 --------------l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~ 465 (571)
++.+++|..|+|++|.+.++|..++.+..|+.|++++|.|..+|..+.....|+.+-.++| .++
T Consensus 417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~n--qi~ 494 (565)
T KOG0472|consen 417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNN--QIG 494 (565)
T ss_pred HHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccc--ccc
Confidence 2333444444444444444444444444444444444444444444444444444444444 334
Q ss_pred ccchh-ccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCCCChHHHhcCHHHHHHHHHHH
Q 008287 466 ALPRS-IGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVVQYMADL 532 (571)
Q Consensus 466 ~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~ 532 (571)
.++.. ++++.+|..|||.+|.|..+|..++++.+|++|.|++|||..++..+.-+|..+++.|+++-
T Consensus 495 ~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~Pr~~iLmkgT~aiL~ylrdr 562 (565)
T KOG0472|consen 495 SVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQPRHQILMKGTAAILSYLRDR 562 (565)
T ss_pred ccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCCHHHHhccChHHHHHHhccc
Confidence 44444 88899999999999999999999999999999999999999999999999999999998763
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=1.6e-25 Score=263.70 Aligned_cols=275 Identities=31% Similarity=0.399 Sum_probs=174.6
Q ss_pred cCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCC-cccchhcCCCCccEEEcccCCCC-CcchhhcCCCCc
Q 008287 237 SSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIV-AVPATIGGLSSLKKLDLHANRII-ELPDSIGDLLSL 314 (571)
Q Consensus 237 ~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L 314 (571)
..+++|+.|+|++|.+.. .+|..+.++++|++|+|++|.+. .+|..+.++++|++|+|++|.+. .+|..++.+++|
T Consensus 161 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVG--KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred hcCCCCCEEECccCcccc--cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 345667777777665543 24556666666666666666655 34556666666666666666665 455566666666
Q ss_pred cEEEccCCCCC-CCchhhcCCCCCCEEEccCCCCC-CCchhhcCCcCCcEEeccCCCCC-CCccccCCCCCCcEEEccCC
Q 008287 315 VYLDLRGNQIS-ALPVALSRLVRLEELDLGSNNLS-SLPDSIGSLISLKKLIVETNDLE-ELPHTIGQCSSLRELRVDYN 391 (571)
Q Consensus 315 ~~L~Ls~n~i~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~Ls~n 391 (571)
++|++++|.+. .+|..++++++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 66666666655 35555666666666666666554 44555555556666666555554 33444555555555555555
Q ss_pred CCC-CCccccccCCccceeecccccCC------------------------c-CccccCCCCCccEEEecCCCCC-CCch
Q 008287 392 RLK-ALPEAVGKIHTLEVLSVRYNNIK------------------------Q-LPTTMSSLSSLRELDVSFNELE-SVPE 444 (571)
Q Consensus 392 ~l~-~l~~~l~~l~~L~~L~L~~n~i~------------------------~-lp~~l~~l~~L~~L~Ls~n~l~-~i~~ 444 (571)
.+. .+|..+..+++|+.|++++|.+. + +|..+..+++|+.|++++|.+. .+|.
T Consensus 319 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~ 398 (968)
T PLN00113 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH
Confidence 544 33444444445555555544444 3 3444444455555555555554 4556
Q ss_pred hhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCc-cchhhcCCCCCcEEEcccCCCCCCC
Q 008287 445 SLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRV-LPDSFRMLSRLRVLRVQENPLEVPP 514 (571)
Q Consensus 445 ~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~ 514 (571)
.+..+++|+.|++++|... +.+|..+..+++|+.|+|++|+++. +|..+..+++|+.|+|++|.+....
T Consensus 399 ~~~~~~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 468 (968)
T PLN00113 399 SLGACRSLRRVRLQDNSFS-GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL 468 (968)
T ss_pred HHhCCCCCCEEECcCCEee-eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec
Confidence 6677888999999888543 4678889999999999999999984 5667889999999999999986433
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=9.4e-27 Score=239.91 Aligned_cols=267 Identities=28% Similarity=0.416 Sum_probs=133.4
Q ss_pred CCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCccc-chhcCCCCccEEEcccCCCCCcch-hhcCCCCccE
Q 008287 239 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVY 316 (571)
Q Consensus 239 ~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~ 316 (571)
+++|+.+++..|.+.. +|.......+|+.|+|.+|.|.++- ..+.-++.|+.|||+.|.|+.+|. ++..-.++++
T Consensus 101 l~nLq~v~l~~N~Lt~---IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTR---IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred CCcceeeeeccchhhh---cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 3455555555553332 2333333444555555555555442 244445555555555555554432 3333345555
Q ss_pred EEccCCCCCCCch-hhcCCCCCCEEEccCCCCCCCchh-hcCCcCCcEEeccCCCCCCC-ccccCCCCCCcEEEccCCCC
Q 008287 317 LDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSLPDS-IGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRL 393 (571)
Q Consensus 317 L~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l 393 (571)
|+|++|.|+++-. .|..+.+|..|.|+.|+++.+|.. |..+++|+.|+|..|.+..+ --.|.++++|+.|.+..|.+
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence 5555555554432 344445555555555555555533 33355555555555555433 22445555555555555555
Q ss_pred CCCc-cccccCCccceeecccccCCcCc-cccCCCCCccEEEecCCCCCCC-chhhhcCCCCcEEEccCCccCCCcc-ch
Q 008287 394 KALP-EAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRAL-PR 469 (571)
Q Consensus 394 ~~l~-~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~Ls~n~l~~i-~~~l~~~~~L~~L~L~~n~~~l~~l-p~ 469 (571)
..+. ..+..+.++++|+|..|++..+- .++.+++.|+.|+|++|.|..| ++.|.++++|+.|+|++|. +..+ +.
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~--i~~l~~~ 335 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR--ITRLDEG 335 (873)
T ss_pred ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc--cccCChh
Confidence 5443 23445555555555555555542 3445555555555555555533 3445555555555555552 2222 22
Q ss_pred hccCCCCccEEecccCCCCccch-hhcCCCCCcEEEcccCCC
Q 008287 470 SIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPL 510 (571)
Q Consensus 470 ~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l 510 (571)
++..|..|++|+|+.|+|..+.+ .|..+.+|++|+|+.|.+
T Consensus 336 sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 34445555555555555555543 455555555555555554
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=3.3e-22 Score=222.57 Aligned_cols=242 Identities=31% Similarity=0.384 Sum_probs=196.0
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEc
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 319 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 319 (571)
++++.|++.+|.+..+. . ..++|++|+|++|+++.+|.. .++|++|+|.+|.+..+|... .+|+.|++
T Consensus 222 ~~L~~L~L~~N~Lt~LP---~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLTSLP---A---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcCCCCC---C---CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEEC
Confidence 46888999988777643 2 247899999999998888753 468889999999888876533 56888999
Q ss_pred cCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccc
Q 008287 320 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA 399 (571)
Q Consensus 320 s~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~ 399 (571)
++|+++.+|.. +++|+.|++++|.+..+|.. ..+|+.|++.+|.++.+|.. ..+|+.|++++|+++.+|..
T Consensus 290 s~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l 360 (788)
T PRK15387 290 FGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTL 360 (788)
T ss_pred cCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccCcccccccc---ccccceEecCCCccCCCCCC
Confidence 99999988753 46899999999999888752 24678888999999888752 35899999999999998864
Q ss_pred cccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccE
Q 008287 400 VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEE 479 (571)
Q Consensus 400 l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~ 479 (571)
..+|+.|++++|.+..+|... .+|+.|+|++|.|+.+|.. .++|+.|++++|. +..+|.. ..+|+.
T Consensus 361 ---p~~L~~L~Ls~N~L~~LP~l~---~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~--LssIP~l---~~~L~~ 426 (788)
T PRK15387 361 ---PSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTSLPVL---PSELKELMVSGNR--LTSLPML---PSGLLS 426 (788)
T ss_pred ---CcccceehhhccccccCcccc---cccceEEecCCcccCCCCc---ccCCCEEEccCCc--CCCCCcc---hhhhhh
Confidence 357888999999999888643 5789999999999988854 4689999999994 5567753 346889
Q ss_pred EecccCCCCccchhhcCCCCCcEEEcccCCCCCCChH
Q 008287 480 LDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 480 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 516 (571)
|++++|+|+.+|..+..+++|+.|+|++|+|+.....
T Consensus 427 L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 427 LSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 9999999999999999999999999999999865433
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.88 E-value=3.9e-22 Score=223.15 Aligned_cols=247 Identities=28% Similarity=0.465 Sum_probs=206.8
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEc
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 319 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 319 (571)
.+...|++.++.+.. +|..+. ++|+.|+|++|.++.+|..+. .+|++|++++|+++.+|..+. .+|+.|+|
T Consensus 178 ~~~~~L~L~~~~Lts---LP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT---IPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc---CCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEEC
Confidence 457789999886665 454443 589999999999999987554 589999999999999987664 47999999
Q ss_pred cCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccc
Q 008287 320 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA 399 (571)
Q Consensus 320 s~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~ 399 (571)
++|.+..+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|.++.+|..
T Consensus 249 s~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 249 SINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPET 322 (754)
T ss_pred cCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcc
Confidence 9999999988765 589999999999999987664 589999999999998887553 5799999999999988865
Q ss_pred cccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccE
Q 008287 400 VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEE 479 (571)
Q Consensus 400 l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~ 479 (571)
+. ++|+.|++++|.++.+|..+. ++|+.|+|++|.++.+|..+ .++|+.|+|++| .+..+|..+. ..|+.
T Consensus 323 l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N--~Lt~LP~~l~--~sL~~ 392 (754)
T PRK15370 323 LP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRN--ALTNLPENLP--AALQI 392 (754)
T ss_pred cc--ccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCC--cCCCCCHhHH--HHHHH
Confidence 43 689999999999999987664 78999999999999888765 378999999999 4567887664 47999
Q ss_pred EecccCCCCccchhh----cCCCCCcEEEcccCCCC
Q 008287 480 LDISNNQIRVLPDSF----RMLSRLRVLRVQENPLE 511 (571)
Q Consensus 480 L~Ls~n~l~~lp~~l----~~l~~L~~L~L~~N~l~ 511 (571)
|++++|+|..+|..+ ..++++..|+|.+|++.
T Consensus 393 LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 393 MQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 999999999888654 44588999999999986
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=9.7e-21 Score=211.98 Aligned_cols=230 Identities=26% Similarity=0.458 Sum_probs=197.4
Q ss_pred CCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCC
Q 008287 266 SSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSN 345 (571)
Q Consensus 266 ~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n 345 (571)
.+.+.|+++++.++.+|..+. +.|+.|+|++|+++.+|..+. .+|++|++++|+++.+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 356889999999999987553 589999999999999988664 599999999999999997665 57999999999
Q ss_pred CCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCC
Q 008287 346 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSS 425 (571)
Q Consensus 346 ~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~ 425 (571)
.+..+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|+++.+|..+. .+|+.|++++|.+..+|..+.
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~- 324 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP- 324 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcccc-
Confidence 9999998765 589999999999999987664 589999999999999886553 589999999999999886553
Q ss_pred CCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccchhhcCCCCCcEEEc
Q 008287 426 LSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRV 505 (571)
Q Consensus 426 l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 505 (571)
++|+.|++++|.++.+|..+. ++|+.|++++|. +..+|..+. ++|+.|+|++|+|+.+|+.+. ..|+.|++
T Consensus 325 -~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~--L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdL 395 (754)
T PRK15370 325 -PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQ--ITVLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQA 395 (754)
T ss_pred -ccceeccccCCccccCChhhc--CcccEEECCCCC--CCcCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhh
Confidence 689999999999999987664 799999999994 556776553 689999999999999998664 47999999
Q ss_pred ccCCCCCCChHH
Q 008287 506 QENPLEVPPRNI 517 (571)
Q Consensus 506 ~~N~l~~~~~~~ 517 (571)
++|.+...|..+
T Consensus 396 s~N~L~~LP~sl 407 (754)
T PRK15370 396 SRNNLVRLPESL 407 (754)
T ss_pred ccCCcccCchhH
Confidence 999998877644
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=4.7e-20 Score=205.41 Aligned_cols=244 Identities=31% Similarity=0.394 Sum_probs=201.4
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEc
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 319 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 319 (571)
.+-..|+|+++++.. +|..+. ++|+.|++.+|+++.+|.. .++|++|+|++|+|+.+|.. .++|++|++
T Consensus 201 ~~~~~LdLs~~~Lts---LP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLTT---LPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCCc---CCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeec
Confidence 456789999997764 566654 4899999999999999853 57999999999999998753 468999999
Q ss_pred cCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccc
Q 008287 320 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA 399 (571)
Q Consensus 320 s~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~ 399 (571)
++|.++.+|... .+|+.|++++|.++.+|.. +++|+.|++++|.+..+|.. ..+|+.|++++|+++.+|..
T Consensus 270 s~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l 340 (788)
T PRK15387 270 FSNPLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL 340 (788)
T ss_pred cCCchhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccCcccccccc
Confidence 999999888633 5788999999999998863 47899999999999988763 34688899999999988853
Q ss_pred cccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccE
Q 008287 400 VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEE 479 (571)
Q Consensus 400 l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~ 479 (571)
..+|+.|+|++|++..+|.. .++|+.|++++|.|+.+|.. ..+|+.|++++| .+..+|.. .++|+.
T Consensus 341 ---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N--~Lt~LP~l---~s~L~~ 406 (788)
T PRK15387 341 ---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN--RLTSLPVL---PSELKE 406 (788)
T ss_pred ---ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCC--cccCCCCc---ccCCCE
Confidence 25899999999999999864 35788999999999998864 367999999999 45567643 367999
Q ss_pred EecccCCCCccchhhcCCCCCcEEEcccCCCCCCChHHHhc
Q 008287 480 LDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRNIVEM 520 (571)
Q Consensus 480 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 520 (571)
|++++|+|+.+|..+ .+|+.|++++|.++..|..+..+
T Consensus 407 LdLS~N~LssIP~l~---~~L~~L~Ls~NqLt~LP~sl~~L 444 (788)
T PRK15387 407 LMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPESLIHL 444 (788)
T ss_pred EEccCCcCCCCCcch---hhhhhhhhccCcccccChHHhhc
Confidence 999999999998743 46889999999999888766543
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=4.5e-22 Score=215.47 Aligned_cols=281 Identities=33% Similarity=0.546 Sum_probs=170.9
Q ss_pred CCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEcc
Q 008287 241 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 320 (571)
Q Consensus 241 ~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls 320 (571)
.|++|++++|.+.. +|..+..+.+|+.|+++.|.|..+|....++.+|++|+|.+|.+..+|.++..+.+|++|+++
T Consensus 46 ~L~~l~lsnn~~~~---fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISS---FPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeecccccccc---CCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence 37777777776554 356666777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCCchhhcCCCC----------------------------------------CCE-EEccCCCCCCCchhhcCC--
Q 008287 321 GNQISALPVALSRLVR----------------------------------------LEE-LDLGSNNLSSLPDSIGSL-- 357 (571)
Q Consensus 321 ~n~i~~lp~~l~~l~~----------------------------------------L~~-L~Ls~n~l~~lp~~l~~l-- 357 (571)
+|.+..+|..+..+.. |++ |+|++|.+..+ .+..+
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~--dls~~~~ 200 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL--DLSNLAN 200 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhh--hhhhccc
Confidence 7776655543322222 222 44444433300 01111
Q ss_pred ----------------------------------------cCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCc
Q 008287 358 ----------------------------------------ISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALP 397 (571)
Q Consensus 358 ----------------------------------------~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~ 397 (571)
.+|++++++.|.+..+|.++..+.+|+.|+..+|+++.+|
T Consensus 201 l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp 280 (1081)
T KOG0618|consen 201 LEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALP 280 (1081)
T ss_pred hhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhH
Confidence 2333334444444444444455555555555555555444
Q ss_pred cccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhc--------------------------CCC
Q 008287 398 EAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCF--------------------------ATT 451 (571)
Q Consensus 398 ~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~--------------------------~~~ 451 (571)
..+..+.+|+.|.+..|.+..+|..+.+++.|++|+|..|.|..+|..+.. .+.
T Consensus 281 ~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~ 360 (1081)
T KOG0618|consen 281 LRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAA 360 (1081)
T ss_pred HHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHH
Confidence 444444555555555555555666666677777777777777666542211 123
Q ss_pred CcEEEccCCccCCCccchhccCCCCccEEecccCCCCccch-hhcCCCCCcEEEcccCCCCCCChHHHhcCHHHHHH
Q 008287 452 LVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVVQ 527 (571)
Q Consensus 452 L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~ 527 (571)
|+.|++.+|..+...+| .+.+..+|+.|+|++|+|..+|+ .+.++..|+.|+|+||.++..+..+...+.++++.
T Consensus 361 Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHhcCcccccchh-hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHh
Confidence 44555555554444444 56667788888888888888875 57777888888888888877777776666665543
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=6.3e-19 Score=209.53 Aligned_cols=257 Identities=21% Similarity=0.359 Sum_probs=123.6
Q ss_pred CCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCC-CCCcchhhcCCCCccEEEc
Q 008287 241 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANR-IIELPDSIGDLLSLVYLDL 319 (571)
Q Consensus 241 ~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L 319 (571)
.++.|++.++.+.. +|..+ ...+|+.|++.+|.+..++..+..+++|++|+|+++. +..+| .+..+++|++|+|
T Consensus 590 ~Lr~L~~~~~~l~~---lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLRC---MPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCCC---CCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEe
Confidence 35555555543322 33333 3455555555555555555445555555555555442 33443 2445555555555
Q ss_pred cCC-CCCCCchhhcCCCCCCEEEccCC-CCCCCchhhcCCcCCcEEeccCCCC-CCCccccCCCCCCcEEEccCCCCCCC
Q 008287 320 RGN-QISALPVALSRLVRLEELDLGSN-NLSSLPDSIGSLISLKKLIVETNDL-EELPHTIGQCSSLRELRVDYNRLKAL 396 (571)
Q Consensus 320 s~n-~i~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~l-~~l~~~l~~l~~L~~L~Ls~n~l~~l 396 (571)
++| .+..+|..+.++++|+.|++++| .+..+|..+ .+++|+.|++++|.. ..+|. ...+|+.|++++|.+..+
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~l 740 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEF 740 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccc
Confidence 554 23445555555555555555554 344444433 344455554444421 12221 112333344443333333
Q ss_pred cccc------------------------------ccCCccceeeccccc-CCcCccccCCCCCccEEEecCC-CCCCCch
Q 008287 397 PEAV------------------------------GKIHTLEVLSVRYNN-IKQLPTTMSSLSSLRELDVSFN-ELESVPE 444 (571)
Q Consensus 397 ~~~l------------------------------~~l~~L~~L~L~~n~-i~~lp~~l~~l~~L~~L~Ls~n-~l~~i~~ 444 (571)
|..+ ...++|+.|+|++|. +..+|..++++++|++|+|++| .+..+|.
T Consensus 741 P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 741 PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 2211 011244444454442 2234555555555555555544 2334443
Q ss_pred hhhcCC---------------------CCcEEEccCCccCCCccchhccCCCCccEEecccC-CCCccchhhcCCCCCcE
Q 008287 445 SLCFAT---------------------TLVKMNIGNNFADLRALPRSIGNLEMLEELDISNN-QIRVLPDSFRMLSRLRV 502 (571)
Q Consensus 445 ~l~~~~---------------------~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~ 502 (571)
.+ .++ +|+.|+|++| .+..+|.++..+++|+.|+|++| ++..+|..+..+++|+.
T Consensus 821 ~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n--~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~ 897 (1153)
T PLN03210 821 GI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT--GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLET 897 (1153)
T ss_pred CC-CccccCEEECCCCCccccccccccccCEeECCCC--CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCe
Confidence 32 334 4445555544 34455666666666666666664 56666655566666666
Q ss_pred EEcccCC
Q 008287 503 LRVQENP 509 (571)
Q Consensus 503 L~L~~N~ 509 (571)
+++.+|+
T Consensus 898 L~l~~C~ 904 (1153)
T PLN03210 898 VDFSDCG 904 (1153)
T ss_pred eecCCCc
Confidence 6666653
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=6.4e-19 Score=209.46 Aligned_cols=241 Identities=24% Similarity=0.403 Sum_probs=149.2
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCC-CCcccchhcCCCCccEEEcccCC-CCCcchhhcCCCCccEE
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENR-IVAVPATIGGLSSLKKLDLHANR-IIELPDSIGDLLSLVYL 317 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~-i~~l~~~l~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L 317 (571)
.+|+.|++.++.+.. ++..+..+++|+.|+|+++. +..+|. +..+++|++|+|++|. +..+|..+..+++|++|
T Consensus 611 ~~L~~L~L~~s~l~~---L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 611 ENLVKLQMQGSKLEK---LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred cCCcEEECcCccccc---cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 455556665554332 33444555555555555543 334442 4455555555555542 33455555555555555
Q ss_pred EccCC-CCCCCchhhcCCC---------------------CCCEEEccCCCCCCCchhhc--------------------
Q 008287 318 DLRGN-QISALPVALSRLV---------------------RLEELDLGSNNLSSLPDSIG-------------------- 355 (571)
Q Consensus 318 ~Ls~n-~i~~lp~~l~~l~---------------------~L~~L~Ls~n~l~~lp~~l~-------------------- 355 (571)
++++| .+..+|..+ +++ +|+.|++++|.+..+|..+.
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence 55554 344444332 333 45555555555555553220
Q ss_pred ----------CCcCCcEEeccCCC-CCCCccccCCCCCCcEEEccCC-CCCCCccccccCCccceeeccccc-CCcCccc
Q 008287 356 ----------SLISLKKLIVETND-LEELPHTIGQCSSLRELRVDYN-RLKALPEAVGKIHTLEVLSVRYNN-IKQLPTT 422 (571)
Q Consensus 356 ----------~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~Ls~n-~l~~l~~~l~~l~~L~~L~L~~n~-i~~lp~~ 422 (571)
..++|+.|++++|. +..+|..++++++|+.|++++| .+..+|..+ .+++|+.|++++|. +..+|..
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence 01345555665553 3356667777777777777765 355666554 56777777777763 3334432
Q ss_pred cCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccC-CCCcc
Q 008287 423 MSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNN-QIRVL 490 (571)
Q Consensus 423 l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n-~l~~l 490 (571)
..+|++|+|++|.++.+|.++..+++|+.|++++|. .+..+|..+..+++|+.|++++| .++.+
T Consensus 845 ---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~-~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 845 ---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCN-NLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCC-CcCccCcccccccCCCeeecCCCcccccc
Confidence 357889999999999999999999999999999875 45678888899999999999999 56543
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=2.1e-21 Score=192.80 Aligned_cols=294 Identities=27% Similarity=0.389 Sum_probs=211.4
Q ss_pred CCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcc-cchhcCCCCccEEEccc-CCCCCcch-hhcCCCCccEE
Q 008287 241 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHA-NRIIELPD-SIGDLLSLVYL 317 (571)
Q Consensus 241 ~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l-~~~l~~l~~L~~L~L~~-n~l~~lp~-~l~~l~~L~~L 317 (571)
....|.|..|++..+. +.+|+.+++|+.|||++|.|..| |..|.++..|..|-+.+ |+|+.+|. .|+.|..|+.|
T Consensus 68 ~tveirLdqN~I~~iP--~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIP--PGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcccCC--hhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 5667888888888776 67889999999999999999987 67899999988887766 88998876 57889999999
Q ss_pred EccCCCCCCCch-hhcCCCCCCEEEccCCCCCCCch-hhcCCcCCcEEeccCCCCC---C----------CccccCCCCC
Q 008287 318 DLRGNQISALPV-ALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDLE---E----------LPHTIGQCSS 382 (571)
Q Consensus 318 ~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~---~----------l~~~l~~l~~ 382 (571)
.+.-|++..++. .+..+++|..|.+..|.+..++. .+..+..++.+.+..|.+. . .|..++...-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 999999886654 78888999999999998888877 5778888888888776532 1 1222233333
Q ss_pred CcEEEccCCCCCCCccccccCCcccee--ecc-cc-cCCcCc-cccCCCCCccEEEecCCCCCCCc-hhhhcCCCCcEEE
Q 008287 383 LRELRVDYNRLKALPEAVGKIHTLEVL--SVR-YN-NIKQLP-TTMSSLSSLRELDVSFNELESVP-ESLCFATTLVKMN 456 (571)
Q Consensus 383 L~~L~Ls~n~l~~l~~~l~~l~~L~~L--~L~-~n-~i~~lp-~~l~~l~~L~~L~Ls~n~l~~i~-~~l~~~~~L~~L~ 456 (571)
..-..+.+.++..++..- ....++.+ .+. .+ .....| ..|..+++|+.|+|++|+|+.|- .++.....++.|.
T Consensus 226 ~~p~rl~~~Ri~q~~a~k-f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARK-FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred cchHHHHHHHhcccchhh-hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 333334444444332110 01112222 111 12 222233 35777888888888888888764 4556777888888
Q ss_pred ccCCccCCCccc-hhccCCCCccEEecccCCCCcc-chhhcCCCCCcEEEcccCCCCCCChHHHhcCHHHHHHHHHHHhh
Q 008287 457 IGNNFADLRALP-RSIGNLEMLEELDISNNQIRVL-PDSFRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVVQYMADLVE 534 (571)
Q Consensus 457 L~~n~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 534 (571)
|..|. +..+. ..|.++..|+.|+|.+|+|+.+ |..|..+..|.+|+|-.|||.|.|. +.|+..|.+
T Consensus 305 L~~N~--l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~----------l~wl~~Wlr 372 (498)
T KOG4237|consen 305 LTRNK--LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR----------LAWLGEWLR 372 (498)
T ss_pred cCcch--HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc----------hHHHHHHHh
Confidence 87773 22222 3578899999999999999977 6789999999999999999999997 458888888
Q ss_pred hhccCCcccccccce
Q 008287 535 KRDAKTQPVKQKKSW 549 (571)
Q Consensus 535 ~~~~~~~~~~~~~~~ 549 (571)
++...+.+..+...+
T Consensus 373 ~~~~~~~~~Cq~p~~ 387 (498)
T KOG4237|consen 373 KKSVVGNPRCQSPGF 387 (498)
T ss_pred hCCCCCCCCCCCCch
Confidence 887666666665544
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=2.7e-21 Score=209.53 Aligned_cols=241 Identities=32% Similarity=0.483 Sum_probs=157.4
Q ss_pred CCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCC
Q 008287 267 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNN 346 (571)
Q Consensus 267 ~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~ 346 (571)
+|++++++.|++..+|..++.+.+|+.|+..+|.++.+|..+....+|++|.+..|.+..+|....+++.|++|+|..|+
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 44444444444444444444444444444444444444444444444444444444444444444444555555555555
Q ss_pred CCCCchhhcC-Cc-CCcEEeccCCCCCCCccc-cCCCCCCcEEEccCCCCCC-CccccccCCccceeecccccCCcCcc-
Q 008287 347 LSSLPDSIGS-LI-SLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLKA-LPEAVGKIHTLEVLSVRYNNIKQLPT- 421 (571)
Q Consensus 347 l~~lp~~l~~-l~-~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~L~~n~i~~lp~- 421 (571)
+..+|+.+.. .. .|+.|+.+.|.+..+|.. =..++.|+.|++.+|.+++ .-..+.+..+|+.|+|++|++..+|.
T Consensus 322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence 5544443221 11 133444444444333311 1124568888888888873 33457778899999999999999885
Q ss_pred ccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCc--cchhhcCCCC
Q 008287 422 TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRV--LPDSFRMLSR 499 (571)
Q Consensus 422 ~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~ 499 (571)
.+.++..|++|+|+||+++.+|..+..+..|++|...+| .+..+| .+..++.|+.+|++.|+|+. +|..... ++
T Consensus 402 ~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN--~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~ 477 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN--QLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PN 477 (1081)
T ss_pred HHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC--ceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cc
Confidence 678899999999999999999999999999999999888 566788 78889999999999999984 4443333 89
Q ss_pred CcEEEcccCCCC
Q 008287 500 LRVLRVQENPLE 511 (571)
Q Consensus 500 L~~L~L~~N~l~ 511 (571)
|++||++||...
T Consensus 478 LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 478 LKYLDLSGNTRL 489 (1081)
T ss_pred cceeeccCCccc
Confidence 999999999853
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.80 E-value=1.2e-21 Score=174.24 Aligned_cols=200 Identities=33% Similarity=0.518 Sum_probs=154.6
Q ss_pred hcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEE
Q 008287 308 IGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELR 387 (571)
Q Consensus 308 l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~ 387 (571)
+..+.+++.|.|+.|+++.+|+.+..+.+|+.|++++|++.++|..++++++|+.|++.-|.+..+|..|+.++.|+.||
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 44556677777777877777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ccCCCCC--CCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCC
Q 008287 388 VDYNRLK--ALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLR 465 (571)
Q Consensus 388 Ls~n~l~--~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~ 465 (571)
+.+|++. .+|..+..+..|+-|.|++|.+..+|..++.+++|+.|.+..|.+-
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll------------------------- 163 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL------------------------- 163 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-------------------------
Confidence 7777775 5666666677777777777777777777777777777777666554
Q ss_pred ccchhccCCCCccEEecccCCCCccchhhcCCC---CCcEEEcccCCCCCCChHHHhcCHHHHHHHHHHH
Q 008287 466 ALPRSIGNLEMLEELDISNNQIRVLPDSFRMLS---RLRVLRVQENPLEVPPRNIVEMGAQAVVQYMADL 532 (571)
Q Consensus 466 ~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~---~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~ 532 (571)
.+|..++.+..|++|++.+|+++.+|..+..+. +-+++.+.+|||..+-...+..|..+++.|++.-
T Consensus 164 ~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf~lG~shV~~yirte 233 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPIAEQFLLGISHVIDYIRTE 233 (264)
T ss_pred hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCChHHHHHHhhHHHHHHHHhhh
Confidence 456678889999999999999999998776654 4467889999999998888999999999998753
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=5e-21 Score=170.28 Aligned_cols=165 Identities=35% Similarity=0.548 Sum_probs=140.4
Q ss_pred cCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEE
Q 008287 262 IGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELD 341 (571)
Q Consensus 262 ~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~ 341 (571)
+..+.+++.|.|++|.++.+|+.+..+.+|+.|++++|+|..+|..++.+++|+.|++.-|++..+|.+|+.++.|+.||
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 44677888888899988888888888888899999888888888888888889999988888888888888888889898
Q ss_pred ccCCCCC--CCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcC
Q 008287 342 LGSNNLS--SLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQL 419 (571)
Q Consensus 342 Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~l 419 (571)
+.+|++. .+|..|..++.|+.|+++.|.+.-+|..++++++|+.|.+..|.+-.+|..++.+..|+.|.+.+|++.-+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeec
Confidence 8888887 67888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccccCCC
Q 008287 420 PTTMSSL 426 (571)
Q Consensus 420 p~~l~~l 426 (571)
|+.++++
T Consensus 189 ppel~~l 195 (264)
T KOG0617|consen 189 PPELANL 195 (264)
T ss_pred Chhhhhh
Confidence 7766554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=6e-19 Score=181.33 Aligned_cols=265 Identities=28% Similarity=0.356 Sum_probs=160.0
Q ss_pred EEecCCCCCCccccccccCCCCCCCEEEeeCCCCC-----cccchhcCCCCccEEEcccCCCCC-------cchhhcCCC
Q 008287 245 LNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIV-----AVPATIGGLSSLKKLDLHANRIIE-------LPDSIGDLL 312 (571)
Q Consensus 245 L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~-----~l~~~l~~l~~L~~L~L~~n~l~~-------lp~~l~~l~ 312 (571)
|+|.++.+.+-.+ ...+..+..|+.|++++|.+. .++..+...+.|++|+++++.+.. ++..+..++
T Consensus 3 l~L~~~~l~~~~~-~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERA-TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccch-HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4555554443322 234455566777777777764 244455566667777777766552 233455677
Q ss_pred CccEEEccCCCCCC-CchhhcCCC---CCCEEEccCCCCCC-----CchhhcCC-cCCcEEeccCCCCC-----CCcccc
Q 008287 313 SLVYLDLRGNQISA-LPVALSRLV---RLEELDLGSNNLSS-----LPDSIGSL-ISLKKLIVETNDLE-----ELPHTI 377 (571)
Q Consensus 313 ~L~~L~Ls~n~i~~-lp~~l~~l~---~L~~L~Ls~n~l~~-----lp~~l~~l-~~L~~L~L~~n~l~-----~l~~~l 377 (571)
+|++|++++|.+.. .+..+..+. +|++|++++|.+.. +...+..+ ++|+.|++++|.++ .++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 77777777777763 333333333 37777777776662 22344555 67777777777766 233445
Q ss_pred CCCCCCcEEEccCCCCCC-----CccccccCCccceeecccccCCc-----CccccCCCCCccEEEecCCCCCCC-chhh
Q 008287 378 GQCSSLRELRVDYNRLKA-----LPEAVGKIHTLEVLSVRYNNIKQ-----LPTTMSSLSSLRELDVSFNELESV-PESL 446 (571)
Q Consensus 378 ~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~Ls~n~l~~i-~~~l 446 (571)
..+.+|++|++++|.++. ++..+..+++|+.|++++|.+.+ +...+..+++|++|++++|.+++. ...+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 566777788887777762 22334445678888888777653 334556677888888888877641 1111
Q ss_pred h-----cCCCCcEEEccCCccC---CCccchhccCCCCccEEecccCCCCcc-----chhhcCC-CCCcEEEcccCCC
Q 008287 447 C-----FATTLVKMNIGNNFAD---LRALPRSIGNLEMLEELDISNNQIRVL-----PDSFRML-SRLRVLRVQENPL 510 (571)
Q Consensus 447 ~-----~~~~L~~L~L~~n~~~---l~~lp~~l~~l~~L~~L~Ls~n~l~~l-----p~~l~~l-~~L~~L~L~~N~l 510 (571)
. ..+.|++|++++|... ...+...+..+++|+.|++++|.++.- ...+... +.|+.|++.+|||
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 1 1356777777766432 123344555667778888888877733 3345555 6777777777765
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=3.6e-17 Score=168.16 Aligned_cols=245 Identities=25% Similarity=0.277 Sum_probs=186.6
Q ss_pred EEEeeCCCCC--cccchhcCCCCccEEEcccCCCC-----CcchhhcCCCCccEEEccCCCCCC-------CchhhcCCC
Q 008287 270 SLDLSENRIV--AVPATIGGLSSLKKLDLHANRII-----ELPDSIGDLLSLVYLDLRGNQISA-------LPVALSRLV 335 (571)
Q Consensus 270 ~L~Ls~n~i~--~l~~~l~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~-------lp~~l~~l~ 335 (571)
.|+|..+.+. .....+..+.+|++|++++|.++ .++..+...++|++|+++++.+.. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777775 34455667788999999999985 356667788899999999998773 334677899
Q ss_pred CCCEEEccCCCCC-CCchhhcCCcC---CcEEeccCCCCCC-----CccccCCC-CCCcEEEccCCCCC-----CCcccc
Q 008287 336 RLEELDLGSNNLS-SLPDSIGSLIS---LKKLIVETNDLEE-----LPHTIGQC-SSLRELRVDYNRLK-----ALPEAV 400 (571)
Q Consensus 336 ~L~~L~Ls~n~l~-~lp~~l~~l~~---L~~L~L~~n~l~~-----l~~~l~~l-~~L~~L~Ls~n~l~-----~l~~~l 400 (571)
+|+.|++++|.+. ..+..+..+.. |++|++++|.+.. +...+..+ ++|+.|++++|.++ .+...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 9999999999887 34444544444 9999999998872 23355666 89999999999988 334556
Q ss_pred ccCCccceeecccccCCc-----CccccCCCCCccEEEecCCCCCC-----CchhhhcCCCCcEEEccCCccCCCccchh
Q 008287 401 GKIHTLEVLSVRYNNIKQ-----LPTTMSSLSSLRELDVSFNELES-----VPESLCFATTLVKMNIGNNFADLRALPRS 470 (571)
Q Consensus 401 ~~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~Ls~n~l~~-----i~~~l~~~~~L~~L~L~~n~~~l~~lp~~ 470 (571)
..+.+|++|++++|.+.+ ++..+..+++|++|+|++|.++. +...+..+++|++|++++|......+...
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 677899999999999884 44556777899999999999873 34456678999999999985332122111
Q ss_pred cc----CCCCccEEecccCCCC-----ccchhhcCCCCCcEEEcccCCCCCCC
Q 008287 471 IG----NLEMLEELDISNNQIR-----VLPDSFRMLSRLRVLRVQENPLEVPP 514 (571)
Q Consensus 471 l~----~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~N~l~~~~ 514 (571)
.. ..+.|++|++++|.++ .+...+..+++|+.|++++|.++..+
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 11 2479999999999997 34566778899999999999997543
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.63 E-value=7e-18 Score=174.69 Aligned_cols=197 Identities=37% Similarity=0.577 Sum_probs=128.6
Q ss_pred CCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccC
Q 008287 311 LLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDY 390 (571)
Q Consensus 311 l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~ 390 (571)
+..-...|++.|++..+|..+..+..|+.+.+..|.+..+|..+..+..|..|+++.|++..+|..+..|+ |+.|-+++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 33444556666666666665555556666666666666666655555555555555555555555554443 45555555
Q ss_pred CCCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchh
Q 008287 391 NRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRS 470 (571)
Q Consensus 391 n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~ 470 (571)
|+++.+|..++....|..|+.+.|.+..+|..++++..|+.|.+..|.+ ..+|..
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l-------------------------~~lp~E 207 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL-------------------------EDLPEE 207 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh-------------------------hhCCHH
Confidence 5555555444444444444544444444444444444444444444444 444555
Q ss_pred ccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCCCChHHHhcCHHHHHHHHHHHhh
Q 008287 471 IGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVVQYMADLVE 534 (571)
Q Consensus 471 l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 534 (571)
+..| .|..||+++|+|..||-.|..|..|++|.|.+||++-+|..++.+|..++++|+....-
T Consensus 208 l~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 208 LCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 5533 48899999999999999999999999999999999999999999999999999865443
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.57 E-value=1e-16 Score=159.63 Aligned_cols=263 Identities=25% Similarity=0.357 Sum_probs=194.9
Q ss_pred CccccccccCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCc-chhhcCCCCccEEEccC-CCCCCCch-
Q 008287 254 NIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLDLRG-NQISALPV- 329 (571)
Q Consensus 254 ~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~-n~i~~lp~- 329 (571)
++..+|..+- +..+.+.|..|.|+.+|+ .|+.+++|+.|||++|+|+.| |+.|..+..|..|-+.+ |+|+.+|.
T Consensus 57 GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 57 GLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 3334454332 467889999999999975 899999999999999999988 77899999988887776 89999997
Q ss_pred hhcCCCCCCEEEccCCCCCCCc-hhhcCCcCCcEEeccCCCCCCCcc-ccCCCCCCcEEEccCCCCC---C---------
Q 008287 330 ALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRLK---A--------- 395 (571)
Q Consensus 330 ~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~---~--------- 395 (571)
.|.++..|+.|.+.-|++..++ +.+..+++|..|.+..|.+..++. .+..+..++.+.+..|.+- .
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 7888999999999999988665 558899999999999999998877 7888999999998887642 1
Q ss_pred -CccccccCCccceeecccccCCcCcc-ccC-CCCCcc-EEEecCCCCCCCch-hhhcCCCCcEEEccCCccCCCccchh
Q 008287 396 -LPEAVGKIHTLEVLSVRYNNIKQLPT-TMS-SLSSLR-ELDVSFNELESVPE-SLCFATTLVKMNIGNNFADLRALPRS 470 (571)
Q Consensus 396 -l~~~l~~l~~L~~L~L~~n~i~~lp~-~l~-~l~~L~-~L~Ls~n~l~~i~~-~l~~~~~L~~L~L~~n~~~l~~lp~~ 470 (571)
.+..++......-..+.+.++..++. .+. .+..+. .+....+....-|. .+..+++|++|++++|..+ ..-+.+
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~a 293 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGA 293 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhh
Confidence 12233333334444555555555432 111 111121 11112222223332 4668999999999999543 223568
Q ss_pred ccCCCCccEEecccCCCCccch-hhcCCCCCcEEEcccCCCCCCChHHHh
Q 008287 471 IGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRNIVE 519 (571)
Q Consensus 471 l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~~~ 519 (571)
|..+..+++|.|..|+|..+.. .|..+..|+.|+|.+|+|++..+-.|+
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 8999999999999999998864 789999999999999999987665543
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.56 E-value=1.4e-16 Score=165.10 Aligned_cols=183 Identities=37% Similarity=0.544 Sum_probs=122.2
Q ss_pred CCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEc
Q 008287 263 GKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDL 342 (571)
Q Consensus 263 ~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~L 342 (571)
..+..-...||+.|++..+|..+..+..|+.+.|+.|.+..+|..++++..|.+|||+.|+++.+|..+..|+ |+.|-+
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 3445555566666666666666666666666666666666666666666677777777777666666666555 666666
Q ss_pred cCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccc
Q 008287 343 GSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTT 422 (571)
Q Consensus 343 s~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~ 422 (571)
++|+++.+|+.++.+..|..|+.+.|.+..+|..++.+.+|+.|.+..|++..+|..+.. -.|..||+++|++..+|-.
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISYLPVD 229 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceeecchh
Confidence 677777666666666666666777776666666666667777777777766666666653 3566677777777777666
Q ss_pred cCCCCCccEEEecCCCCCCCchhhh
Q 008287 423 MSSLSSLRELDVSFNELESVPESLC 447 (571)
Q Consensus 423 l~~l~~L~~L~Ls~n~l~~i~~~l~ 447 (571)
|..++.|++|-|.+|.+.+-|..++
T Consensus 230 fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred hhhhhhheeeeeccCCCCCChHHHH
Confidence 6777777777777776666665554
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.50 E-value=2.6e-14 Score=151.76 Aligned_cols=260 Identities=33% Similarity=0.483 Sum_probs=182.8
Q ss_pred EEEecCCCC-CCccccccccCCCCCCCEEEeeCCCCCcccchhcCCC-CccEEEcccCCCCCcchhhcCCCCccEEEccC
Q 008287 244 DLNLQNKLM-DNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLS-SLKKLDLHANRIIELPDSIGDLLSLVYLDLRG 321 (571)
Q Consensus 244 ~L~L~~~~~-~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~-~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~ 321 (571)
.+.+..+.+ ... ..+..++.++.|++.+|.++.++.....+. +|+.|++++|.+..+|..++.+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~----~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNI----SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCc----hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence 466666654 222 234455788889999998888887666664 89999999999888877888889999999999
Q ss_pred CCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccccc
Q 008287 322 NQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVG 401 (571)
Q Consensus 322 n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~ 401 (571)
|++..+|...+.++.|+.|++++|.+..+|..+.....|+.|.+.+|.+..++..+..+.++..+.+.+|++..++..+.
T Consensus 173 N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 252 (394)
T COG4886 173 NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG 252 (394)
T ss_pred chhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhc
Confidence 99998887776888899999999999988887777777888988888777777778888888888888888887777788
Q ss_pred cCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEe
Q 008287 402 KIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELD 481 (571)
Q Consensus 402 ~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~ 481 (571)
.+.+++.|++++|.+..++. ++.+.++++|++++|.+..++........+...... + .....+........+....
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~ 328 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN-L--LLTLKALELKLNSILLNNN 328 (394)
T ss_pred cccccceecccccccccccc-ccccCccCEEeccCccccccchhhhccchhHHhhhh-h--hhhcccccccccccccccc
Confidence 88889999999998888866 888888999999888887655433222222111111 1 0001111112222333334
Q ss_pred cccCCCCccchhhcCCCCCcEEEcccCCCC
Q 008287 482 ISNNQIRVLPDSFRMLSRLRVLRVQENPLE 511 (571)
Q Consensus 482 Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~ 511 (571)
+..+.....+..+.....+..++...+...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (394)
T COG4886 329 ILSNGETSSPEALSILESLNNLWTLDNALD 358 (394)
T ss_pred cccccccccchhhcccccccCceecccccc
Confidence 444445555555555555666666555543
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.45 E-value=1.1e-13 Score=146.96 Aligned_cols=194 Identities=34% Similarity=0.539 Sum_probs=125.7
Q ss_pred EEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCC-CCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCC
Q 008287 293 KLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLV-RLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLE 371 (571)
Q Consensus 293 ~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~-~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~ 371 (571)
.|.+..+.+......+..++.+..|++.+|.+..++.....+. +|+.|++++|.+..+|..++.+++|+.|++++|.+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 5677777664333445566777888888888877776666664 777888888777777666777777777777777777
Q ss_pred CCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCC
Q 008287 372 ELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATT 451 (571)
Q Consensus 372 ~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~ 451 (571)
.++......+.|+.|++++|++..+|..+.....|++|.+++|.+...+..+..+.++..|.+.+|.+..++..+..+++
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~ 256 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN 256 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccc
Confidence 77666666777777777777777777665555667777777776555556666677777777777766655444444444
Q ss_pred CcEEEccCCccCCCccchhccCCCCccEEecccCCCCc
Q 008287 452 LVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRV 489 (571)
Q Consensus 452 L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 489 (571)
++.|++++| .+..++. ++.+.+|+.|++++|.+..
T Consensus 257 l~~L~~s~n--~i~~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 257 LETLDLSNN--QISSISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cceeccccc--ccccccc-ccccCccCEEeccCccccc
Confidence 555555544 2223332 4444455555555554443
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.6e-14 Score=144.46 Aligned_cols=212 Identities=26% Similarity=0.341 Sum_probs=129.6
Q ss_pred cCCCCccEEEcccCCCCCcc--hhhcCCCCccEEEccCCCCCC---CchhhcCCCCCCEEEccCCCCCCCchh--hcCCc
Q 008287 286 GGLSSLKKLDLHANRIIELP--DSIGDLLSLVYLDLRGNQISA---LPVALSRLVRLEELDLGSNNLSSLPDS--IGSLI 358 (571)
Q Consensus 286 ~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~i~~---lp~~l~~l~~L~~L~Ls~n~l~~lp~~--l~~l~ 358 (571)
.++.+|+.+.|.++.+...+ .....|++++.|||+.|-+.. +-..+..+++|+.|+++.|.+....++ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 34455555555555554443 234456666666666665443 223445666666666666655532221 12456
Q ss_pred CCcEEeccCCCCC--CCccccCCCCCCcEEEccCCC-CCCCccccccCCccceeecccccCCcCc--cccCCCCCccEEE
Q 008287 359 SLKKLIVETNDLE--ELPHTIGQCSSLRELRVDYNR-LKALPEAVGKIHTLEVLSVRYNNIKQLP--TTMSSLSSLRELD 433 (571)
Q Consensus 359 ~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~Ls~n~-l~~l~~~l~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~~L~ 433 (571)
+|+.|.++.|.++ ++...+..+++|+.|++.+|. +..-......++.|+.|+|++|++-+++ ...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 6777777777766 333445567777777777774 2211122334567888888888777765 4567788888888
Q ss_pred ecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccch--hhcCCCCCcEEEcccCCCC
Q 008287 434 VSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD--SFRMLSRLRVLRVQENPLE 511 (571)
Q Consensus 434 Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~N~l~ 511 (571)
++.+.++++-.. +.+.+ .-...+++|+.|++..|+|..++. .+..+++|+.|.+..|+++
T Consensus 278 ls~tgi~si~~~-----------------d~~s~-~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEP-----------------DVESL-DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCC-----------------Cccch-hhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 888877754210 00000 112346788899999998887764 5777888888888888887
Q ss_pred CCCh
Q 008287 512 VPPR 515 (571)
Q Consensus 512 ~~~~ 515 (571)
....
T Consensus 340 ~e~~ 343 (505)
T KOG3207|consen 340 KETD 343 (505)
T ss_pred cccc
Confidence 6544
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.35 E-value=2e-13 Score=131.92 Aligned_cols=134 Identities=26% Similarity=0.303 Sum_probs=103.5
Q ss_pred cCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEE
Q 008287 377 IGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMN 456 (571)
Q Consensus 377 l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~ 456 (571)
+..+..|++||+++|.++.+.+...-++.++.|++++|.|..+.. +..+++|++|||++|.++++..+-..+-+.++|+
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 445667788888888888777777777888888888888877744 7778888888888888877766666777788888
Q ss_pred ccCCccCCCccchhccCCCCccEEecccCCCCccc--hhhcCCCCCcEEEcccCCCCCCC
Q 008287 457 IGNNFADLRALPRSIGNLEMLEELDISNNQIRVLP--DSFRMLSRLRVLRVQENPLEVPP 514 (571)
Q Consensus 457 L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~N~l~~~~ 514 (571)
|..|. ++.+ ..++.+-+|..||+++|+|..+. ..++++|.|+.+.|.+||+...+
T Consensus 359 La~N~--iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 359 LAQNK--IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhh--Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 88873 3333 35667778889999999998775 37899999999999999987654
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.33 E-value=2.7e-13 Score=130.94 Aligned_cols=169 Identities=25% Similarity=0.362 Sum_probs=118.0
Q ss_pred CCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecc
Q 008287 333 RLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVR 412 (571)
Q Consensus 333 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~ 412 (571)
....|+++||++|.|+.+.++..-.+.++.|+++.|.+..+.. +..+++|++||+++|.++.+..+-..+.++++|.|.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 3456777788888777777777777788888888887776643 777888888888888887776666677788888888
Q ss_pred cccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccch
Q 008287 413 YNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD 492 (571)
Q Consensus 413 ~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 492 (571)
+|.|.++ ..++.+-.|..||+++|+|..+.. + ..++++|.|+.|.|.+|.|..+++
T Consensus 361 ~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~lde----------------------V-~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 361 QNKIETL-SGLRKLYSLVNLDLSSNQIEELDE----------------------V-NHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhHhhh-hhhHhhhhheeccccccchhhHHH----------------------h-cccccccHHHHHhhcCCCccccch
Confidence 8887776 566777778888888888765432 1 368889999999999999998876
Q ss_pred h----hcCC-CCCcEEEcccCCCCCCChHHHhcCHHHHHHHHHH
Q 008287 493 S----FRML-SRLRVLRVQENPLEVPPRNIVEMGAQAVVQYMAD 531 (571)
Q Consensus 493 ~----l~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~ 531 (571)
. +..+ ..-..+.|++. +.+..+++...++..+..
T Consensus 417 YRTKVLa~FGERaSE~~LD~~-----~~~~~ELDTV~Vl~Al~K 455 (490)
T KOG1259|consen 417 YRTKVLARFGERASEISLDNE-----PGNQQELDTVLVLSALLK 455 (490)
T ss_pred HHHHHHHHHhhhhhheecCCC-----CcchhhhhHHHHHHHHHH
Confidence 2 1111 12233444443 334445556566555544
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.32 E-value=8.2e-13 Score=130.51 Aligned_cols=241 Identities=24% Similarity=0.312 Sum_probs=130.9
Q ss_pred ccCCCCCCCEEEeeCCCCCc-----ccchhcCCCCccEEEcccCCCC----Ccch-------hhcCCCCccEEEccCCCC
Q 008287 261 SIGKLSSLVSLDLSENRIVA-----VPATIGGLSSLKKLDLHANRII----ELPD-------SIGDLLSLVYLDLRGNQI 324 (571)
Q Consensus 261 ~~~~l~~L~~L~Ls~n~i~~-----l~~~l~~l~~L~~L~L~~n~l~----~lp~-------~l~~l~~L~~L~Ls~n~i 324 (571)
.+..+..++.|+|++|.+.. +...+.+.+.|+..++++--.. .+|. .+-.+++|++||||.|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 44556667777777776652 3334555666666666653221 2222 233445666666666654
Q ss_pred CC-----CchhhcCCCCCCEEEccCCCCCCCchh-hcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCc-
Q 008287 325 SA-----LPVALSRLVRLEELDLGSNNLSSLPDS-IGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALP- 397 (571)
Q Consensus 325 ~~-----lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~- 397 (571)
.. +-..+.++..|++|.|.+|.+...... ++. .|..|. ....+..-+.|+.+.+.+|++...+
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--------~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--------VNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--------HHhccCCCcceEEEEeeccccccccH
Confidence 41 112344455555555555555422111 100 000000 0112334456666666666665322
Q ss_pred ----cccccCCccceeecccccCCc-----CccccCCCCCccEEEecCCCCCC-----CchhhhcCCCCcEEEccCCccC
Q 008287 398 ----EAVGKIHTLEVLSVRYNNIKQ-----LPTTMSSLSSLRELDVSFNELES-----VPESLCFATTLVKMNIGNNFAD 463 (571)
Q Consensus 398 ----~~l~~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~Ls~n~l~~-----i~~~l~~~~~L~~L~L~~n~~~ 463 (571)
..+...+.|+.+.+..|.|.. +...+..+++|+.|||..|.++. +...++.+++|+.|++++|...
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 234444566666666665543 23455666666666666666652 2334455566666666666332
Q ss_pred CCc---cchhc-cCCCCccEEecccCCCC-----ccchhhcCCCCCcEEEcccCCCC
Q 008287 464 LRA---LPRSI-GNLEMLEELDISNNQIR-----VLPDSFRMLSRLRVLRVQENPLE 511 (571)
Q Consensus 464 l~~---lp~~l-~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~N~l~ 511 (571)
... +-..+ ...|+|+.|.|.+|.|+ .+..++...+.|..|+|++|.+.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 221 11222 34788999999999888 23445667899999999999994
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.25 E-value=3.6e-12 Score=145.53 Aligned_cols=230 Identities=27% Similarity=0.363 Sum_probs=152.0
Q ss_pred cccccccccccCCCCCcc-chHH--hhhhhccccCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCC--CCcc
Q 008287 207 IHDSTLKSGAVSGQDGEK-LSLI--KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENR--IVAV 281 (571)
Q Consensus 207 i~d~~l~~~~~~~~~~~~-l~~~--~~~~l~~~~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~--i~~l 281 (571)
++++.+|.....+...++ +... +.....+.......|++.+.++.+..+. .. ..++.|++|-+.+|. +..+
T Consensus 487 vRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~---~~-~~~~~L~tLll~~n~~~l~~i 562 (889)
T KOG4658|consen 487 VREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIA---GS-SENPKLRTLLLQRNSDWLLEI 562 (889)
T ss_pred HHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhcc---CC-CCCCccceEEEeecchhhhhc
Confidence 455556665544433333 1111 1222334445566889999988665543 22 356689999999996 5666
Q ss_pred cc-hhcCCCCccEEEcccC-CCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCC-CCchhhcCCc
Q 008287 282 PA-TIGGLSSLKKLDLHAN-RIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLS-SLPDSIGSLI 358 (571)
Q Consensus 282 ~~-~l~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~ 358 (571)
+. .|..++.|++|||++| .+..+|..++.|-+|++|+++++.|+.+|.+++++..|.+||+..+.-. .+|.....+.
T Consensus 563 s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~ 642 (889)
T KOG4658|consen 563 SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ 642 (889)
T ss_pred CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcc
Confidence 54 6889999999999987 5679999999999999999999999999999999999999999988543 4555566699
Q ss_pred CCcEEeccCCCCC---CCccccCCCCCCcEEEccCCCCCCCccccccCCccc----eeecccccCCcCccccCCCCCccE
Q 008287 359 SLKKLIVETNDLE---ELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLE----VLSVRYNNIKQLPTTMSSLSSLRE 431 (571)
Q Consensus 359 ~L~~L~L~~n~l~---~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~----~L~L~~n~i~~lp~~l~~l~~L~~ 431 (571)
+|++|.+...... ..-..+.++.+|+.+.+..... .+-..+..+..|. .+.+.++.....+..+..+.+|+.
T Consensus 643 ~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~ 721 (889)
T KOG4658|consen 643 SLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEE 721 (889)
T ss_pred cccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcce
Confidence 9999988765422 1223445566666666544333 1111112222222 333334444445566777777777
Q ss_pred EEecCCCCCC
Q 008287 432 LDVSFNELES 441 (571)
Q Consensus 432 L~Ls~n~l~~ 441 (571)
|.+.++.+.+
T Consensus 722 L~i~~~~~~e 731 (889)
T KOG4658|consen 722 LSILDCGISE 731 (889)
T ss_pred EEEEcCCCch
Confidence 7777776653
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.24 E-value=5.5e-12 Score=116.96 Aligned_cols=102 Identities=33% Similarity=0.555 Sum_probs=20.5
Q ss_pred CccEEEcccCCCCCcchhhc-CCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhc-CCcCCcEEeccC
Q 008287 290 SLKKLDLHANRIIELPDSIG-DLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIG-SLISLKKLIVET 367 (571)
Q Consensus 290 ~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~L~~ 367 (571)
++++|+|++|.|+.+ +.++ .+.+|+.|++++|.|+.+. ++..+++|++|++++|.|+++.+.+. .+++|+.|++++
T Consensus 20 ~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred ccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 344444444444443 2232 2344444444444444442 34444444444444444444433221 344444444444
Q ss_pred CCCCCCc--cccCCCCCCcEEEccCCCC
Q 008287 368 NDLEELP--HTIGQCSSLRELRVDYNRL 393 (571)
Q Consensus 368 n~l~~l~--~~l~~l~~L~~L~Ls~n~l 393 (571)
|.+..+. ..+..+++|+.|++.+|.+
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 4443221 1233344444444444443
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=6.7e-12 Score=116.42 Aligned_cols=104 Identities=38% Similarity=0.514 Sum_probs=24.0
Q ss_pred CCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhh-cCCCCccEEEc
Q 008287 241 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSI-GDLLSLVYLDL 319 (571)
Q Consensus 241 ~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L 319 (571)
.++.|+|++|.+..++.+. ..+.+|+.|+|++|.|..+.+ +..+++|+.|++++|.|+.+...+ ..+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~---~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLG---ATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ----------------S-----TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccchh---hhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4455555555554443221 134455555555555554432 444555555555555555443333 23455555555
Q ss_pred cCCCCCCCc--hhhcCCCCCCEEEccCCCCC
Q 008287 320 RGNQISALP--VALSRLVRLEELDLGSNNLS 348 (571)
Q Consensus 320 s~n~i~~lp--~~l~~l~~L~~L~Ls~n~l~ 348 (571)
++|+|..+. ..+..+++|+.|++.+|.+.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 555544322 13344445555555555444
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=1e-12 Score=129.89 Aligned_cols=233 Identities=20% Similarity=0.258 Sum_probs=138.5
Q ss_pred ccCCCCCcEEEecCCCCC--CccccccccCCCCCCCEEEeeCCCC----Cccc-------chhcCCCCccEEEcccCCCC
Q 008287 236 VSSKKGTRDLNLQNKLMD--NIEWLPDSIGKLSSLVSLDLSENRI----VAVP-------ATIGGLSSLKKLDLHANRII 302 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~--~~~~l~~~~~~l~~L~~L~Ls~n~i----~~l~-------~~l~~l~~L~~L~L~~n~l~ 302 (571)
......++.|+|+||.++ ...++...+...++|+..++++-.. ..+| ..+.++++|++|+|++|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 346678999999999765 3456677888889999999987521 1333 34567789999999999887
Q ss_pred -C----cchhhcCCCCccEEEccCCCCCCCch--------------hhcCCCCCCEEEccCCCCCCCc-----hhhcCCc
Q 008287 303 -E----LPDSIGDLLSLVYLDLRGNQISALPV--------------ALSRLVRLEELDLGSNNLSSLP-----DSIGSLI 358 (571)
Q Consensus 303 -~----lp~~l~~l~~L~~L~Ls~n~i~~lp~--------------~l~~l~~L~~L~Ls~n~l~~lp-----~~l~~l~ 358 (571)
. +-.-+.++..|++|.|.+|.+..... ..+.-++|+++..+.|++..-+ ..+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 2 22345779999999999999884321 2233456666666666655322 2344455
Q ss_pred CCcEEeccCCCCCC-----CccccCCCCCCcEEEccCCCCC-----CCccccccCCccceeecccccCCc-----Ccccc
Q 008287 359 SLKKLIVETNDLEE-----LPHTIGQCSSLRELRVDYNRLK-----ALPEAVGKIHTLEVLSVRYNNIKQ-----LPTTM 423 (571)
Q Consensus 359 ~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~L~~n~i~~-----lp~~l 423 (571)
.|+.+.+..|.+.. +...+..|++|+.|||..|.++ .+...++.+++|+.|++++|.+.. +...+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 55555555554431 1223445555555555555554 122334444455555555554443 11111
Q ss_pred -CCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCC
Q 008287 424 -SSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR 488 (571)
Q Consensus 424 -~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~ 488 (571)
...|.|+.|.+.+|.|+.- ....+...+...+.|+.|+|++|++.
T Consensus 266 ~~~~p~L~vl~l~gNeIt~d--------------------a~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRD--------------------AALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred hccCCCCceeccCcchhHHH--------------------HHHHHHHHHhcchhhHHhcCCccccc
Confidence 2244555555555544411 00112234556788999999999884
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.2e-12 Score=129.52 Aligned_cols=203 Identities=25% Similarity=0.317 Sum_probs=130.4
Q ss_pred cCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcc---cchhcCCCCccEEEcccCCCCCcchh--hcCC
Q 008287 237 SSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV---PATIGGLSSLKKLDLHANRIIELPDS--IGDL 311 (571)
Q Consensus 237 ~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l---~~~l~~l~~L~~L~L~~n~l~~lp~~--l~~l 311 (571)
+.++.|+.+.|.++.+...+. ......|++++.|||+.|-+... -.....+++|+.|+|+.|++.....+ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~-~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGI-EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccch-hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 355667788888776654331 13556778888888888866542 23456778888888888877633221 1356
Q ss_pred CCccEEEccCCCCC--CCchhhcCCCCCCEEEccCCC-CCCCchhhcCCcCCcEEeccCCCCCCCc--cccCCCCCCcEE
Q 008287 312 LSLVYLDLRGNQIS--ALPVALSRLVRLEELDLGSNN-LSSLPDSIGSLISLKKLIVETNDLEELP--HTIGQCSSLREL 386 (571)
Q Consensus 312 ~~L~~L~Ls~n~i~--~lp~~l~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L 386 (571)
.+|+.|.|+.|.++ .+-..+..+|+|+.|++..|. +..-.....-+..|+.|+|++|.+..++ ...+.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 77888888888777 344455667788888888774 2221222334566777788877776655 456777777777
Q ss_pred EccCCCCCCC--ccc-----cccCCccceeecccccCCcCc--cccCCCCCccEEEecCCCCC
Q 008287 387 RVDYNRLKAL--PEA-----VGKIHTLEVLSVRYNNIKQLP--TTMSSLSSLRELDVSFNELE 440 (571)
Q Consensus 387 ~Ls~n~l~~l--~~~-----l~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~~L~Ls~n~l~ 440 (571)
+++.|++.++ |+. ....++|++|++..|+|.+.+ ..+..+++|++|.+..|.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 7777777643 332 345567777777777776643 34556667777777666664
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.20 E-value=1.5e-12 Score=139.06 Aligned_cols=223 Identities=30% Similarity=0.425 Sum_probs=105.9
Q ss_pred cCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEE
Q 008287 262 IGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELD 341 (571)
Q Consensus 262 ~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~ 341 (571)
+..+++|+.|++.+|.|..+...+..+++|++|+|++|.|+.+ ..+..++.|+.|++++|.|..+. .+..++.|+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhcc-CCccchhhhccc
Confidence 3445555555555555554433344455555555555555544 33444444555555555555443 333355555555
Q ss_pred ccCCCCCCCchh-hcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCc
Q 008287 342 LGSNNLSSLPDS-IGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLP 420 (571)
Q Consensus 342 Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp 420 (571)
+++|.+..+... ...+.+++.+.+.+|.+..+ ..+..+.. +..+++..|.+..+-
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-~~~~~~~~-----------------------l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNSIREI-EGLDLLKK-----------------------LVLLSLLDNKISKLE 224 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCchhcc-cchHHHHH-----------------------HHHhhcccccceecc
Confidence 555555544321 24444444444544444333 12222233 333344444443321
Q ss_pred cccCCCC--CccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCc---cch--h
Q 008287 421 TTMSSLS--SLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRV---LPD--S 493 (571)
Q Consensus 421 ~~l~~l~--~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~---lp~--~ 493 (571)
.+..+. +|+.+++++|.+..++..+..+..+..|++..|... .+ ..+...+.+..+.+..|.+.. ..+ .
T Consensus 225 -~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (414)
T KOG0531|consen 225 -GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS--NL-EGLERLPKLSELWLNDNKLALSEAISQEYI 300 (414)
T ss_pred -CcccchhHHHHHHhcccCccccccccccccccccccchhhcccc--cc-ccccccchHHHhccCcchhcchhhhhcccc
Confidence 111111 244455555554444334444444444444444211 11 123344556666666666552 111 2
Q ss_pred hcCCCCCcEEEcccCCCCCCC
Q 008287 494 FRMLSRLRVLRVQENPLEVPP 514 (571)
Q Consensus 494 l~~l~~L~~L~L~~N~l~~~~ 514 (571)
....+.++.+.+.+|++....
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 301 TSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred ccccccccccccccCcccccc
Confidence 566778888888888876543
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.13 E-value=6.9e-13 Score=141.16 Aligned_cols=179 Identities=28% Similarity=0.361 Sum_probs=130.4
Q ss_pred CCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccC
Q 008287 380 CSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGN 459 (571)
Q Consensus 380 l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~ 459 (571)
+..|...++++|.+..+...+.-++.|+.|+|+.|++.... .+..|++|++|||+.|.+..+|..-.....|+.|++.|
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 45678888899999888888888899999999999998874 78889999999999999988876544444599999999
Q ss_pred CccCCCccchhccCCCCccEEecccCCCCccc--hhhcCCCCCcEEEcccCCCCCCChHHHhcCHHHHHHHHHHH--hhh
Q 008287 460 NFADLRALPRSIGNLEMLEELDISNNQIRVLP--DSFRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVVQYMADL--VEK 535 (571)
Q Consensus 460 n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~--~~~ 535 (571)
|. +..+ ..+.+|.+|+.||+++|-|.... ..++.|..|+.|+|.|||+-|-+..- .++.+|+... ..+
T Consensus 242 N~--l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hR-----aataqYl~~~~a~~~ 313 (1096)
T KOG1859|consen 242 NA--LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHR-----AATAQYLHKNSAPVK 313 (1096)
T ss_pred cH--HHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHH-----HHHHhHhccccCCcc
Confidence 93 3444 35778999999999999887543 24778889999999999999987653 3566676421 111
Q ss_pred hccCCcccccccceeeeeecccCCCCccCCcc
Q 008287 536 RDAKTQPVKQKKSWVEMCFFSRSNKRKRNGMD 567 (571)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (571)
-.-....+....+|...-....+..++-+.+.
T Consensus 314 f~LDgk~l~~~efwk~~s~~~hr~~~p~s~~~ 345 (1096)
T KOG1859|consen 314 FKLDGKALGGREFWKRQSGVSHRSSRPASYGF 345 (1096)
T ss_pred eEecceeccchhhhhhhhheecCCCCCCCCCC
Confidence 11112234556677665555555555444333
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.10 E-value=6.1e-12 Score=134.30 Aligned_cols=214 Identities=29% Similarity=0.421 Sum_probs=130.1
Q ss_pred ccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCC
Q 008287 291 LKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDL 370 (571)
Q Consensus 291 L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l 370 (571)
++.+++..|.+..+-..++.+.+|..|++.+|+|..+...+..+++|++|++++|.|+.+ ..+..++.|+.|++.+|.+
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLI 152 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcc
Confidence 333334444444332334445555555555555554433245555555555555555554 3344555566666666655
Q ss_pred CCCccccCCCCCCcEEEccCCCCCCCccc-cccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcC
Q 008287 371 EELPHTIGQCSSLRELRVDYNRLKALPEA-VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFA 449 (571)
Q Consensus 371 ~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~ 449 (571)
..+ ..+..++.|+.+++++|++..+... ...+.+++.+.+.+|.+..+ ..+..+..+..+++..|.++.+- .+...
T Consensus 153 ~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~-~l~~~ 229 (414)
T KOG0531|consen 153 SDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLE-GLNEL 229 (414)
T ss_pred hhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceecc-Ccccc
Confidence 554 2344477777777877777766442 46778888999999988775 33444555666688888887552 22223
Q ss_pred C--CCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCC
Q 008287 450 T--TLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLE 511 (571)
Q Consensus 450 ~--~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~ 511 (571)
. .|+.+++.+|. +..++..+..+..+..|++.+|++..+.. +...+.+..+.+..|++.
T Consensus 230 ~~~~L~~l~l~~n~--i~~~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 230 VMLHLRELYLSGNR--ISRSPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLA 290 (414)
T ss_pred hhHHHHHHhcccCc--cccccccccccccccccchhhcccccccc-ccccchHHHhccCcchhc
Confidence 3 37888888883 33443566778888899999988886644 455666666666666654
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=7.4e-11 Score=134.89 Aligned_cols=224 Identities=26% Similarity=0.323 Sum_probs=144.5
Q ss_pred cccCCCCCcEEEecCCC--CCCccccccccCCCCCCCEEEeeCC-CCCcccchhcCCCCccEEEcccCCCCCcchhhcCC
Q 008287 235 EVSSKKGTRDLNLQNKL--MDNIEWLPDSIGKLSSLVSLDLSEN-RIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDL 311 (571)
Q Consensus 235 ~~~~~~~l~~L~L~~~~--~~~~~~l~~~~~~l~~L~~L~Ls~n-~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l 311 (571)
.-...+.++.|-+.+|. +..+. +..|..++.|++|||++| .+..+|..++++-+|++|+|+++.+..+|.++.+|
T Consensus 540 ~~~~~~~L~tLll~~n~~~l~~is--~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~L 617 (889)
T KOG4658|consen 540 GSSENPKLRTLLLQRNSDWLLEIS--GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNL 617 (889)
T ss_pred CCCCCCccceEEEeecchhhhhcC--HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHH
Confidence 34456679999999985 34433 345888999999999988 57799999999999999999999999999999999
Q ss_pred CCccEEEccCCCCC-CCchhhcCCCCCCEEEccCCCCCC---CchhhcCCcCCcEEeccCCCCCCCccccCCCCCCc---
Q 008287 312 LSLVYLDLRGNQIS-ALPVALSRLVRLEELDLGSNNLSS---LPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLR--- 384 (571)
Q Consensus 312 ~~L~~L~Ls~n~i~-~lp~~l~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~--- 384 (571)
..|.+||+..+.-. .+|.....+.+|++|.+....... .-..+..+.+|+.+.+..... .+...+..++.|.
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~ 696 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLL 696 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHh
Confidence 99999999988644 455556669999999997765331 112344455555554433332 1112222222222
Q ss_pred -EEEccCCCCCCCccccccCCccceeecccccCCcCcc-ccC------CCCCccEEEecCCCCCCCchhhhcCCCCcEEE
Q 008287 385 -ELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPT-TMS------SLSSLRELDVSFNELESVPESLCFATTLVKMN 456 (571)
Q Consensus 385 -~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~-~l~------~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~ 456 (571)
.+.+.++.....+..+..+.+|+.|.+.++.+.+... ... .++++..+...++.....+.+.-+.++|+.|.
T Consensus 697 ~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~ 776 (889)
T KOG4658|consen 697 QSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLS 776 (889)
T ss_pred HhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEE
Confidence 3333334444555566777778888887777654211 111 02233333333443334445555667777777
Q ss_pred ccCCc
Q 008287 457 IGNNF 461 (571)
Q Consensus 457 L~~n~ 461 (571)
+..+.
T Consensus 777 l~~~~ 781 (889)
T KOG4658|consen 777 LVSCR 781 (889)
T ss_pred Eeccc
Confidence 76663
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.70 E-value=1.9e-10 Score=122.93 Aligned_cols=129 Identities=28% Similarity=0.319 Sum_probs=97.0
Q ss_pred CCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCC
Q 008287 289 SSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETN 368 (571)
Q Consensus 289 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 368 (571)
..|...+.++|.+..+-.++.-++.|+.|||+.|+++.+. .+..+++|++|||++|.+..+|.--..-..|+.|++.+|
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence 4577778888888877677777888888888888888775 778888888888888888877653111223888888888
Q ss_pred CCCCCccccCCCCCCcEEEccCCCCCCCc--cccccCCccceeecccccCCcC
Q 008287 369 DLEELPHTIGQCSSLRELRVDYNRLKALP--EAVGKIHTLEVLSVRYNNIKQL 419 (571)
Q Consensus 369 ~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~--~~l~~l~~L~~L~L~~n~i~~l 419 (571)
.++.+ ..+.++.+|+.||+++|-+.... ..+..+..|+.|.|.||.+.--
T Consensus 243 ~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 243 ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 88776 45777888888888888776442 3345667888888888877643
No 41
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.63 E-value=1.1e-08 Score=98.23 Aligned_cols=133 Identities=24% Similarity=0.320 Sum_probs=62.6
Q ss_pred hcCCCCccEEEccCCCCC-CCc----hhhcCCCCCCEEEccCCCCCCCchh-h-------------cCCcCCcEEeccCC
Q 008287 308 IGDLLSLVYLDLRGNQIS-ALP----VALSRLVRLEELDLGSNNLSSLPDS-I-------------GSLISLKKLIVETN 368 (571)
Q Consensus 308 l~~l~~L~~L~Ls~n~i~-~lp----~~l~~l~~L~~L~Ls~n~l~~lp~~-l-------------~~l~~L~~L~L~~n 368 (571)
+-+||+|+.++||.|.+. ..| ..+++-+.|.+|.+++|.+..+... + ..-+.|+.+.+..|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 344555555555555444 122 2334445555555555544432211 1 12234555555555
Q ss_pred CCCCCcc-----ccCCCCCCcEEEccCCCCC--CCc----cccccCCccceeecccccCCc-----CccccCCCCCccEE
Q 008287 369 DLEELPH-----TIGQCSSLRELRVDYNRLK--ALP----EAVGKIHTLEVLSVRYNNIKQ-----LPTTMSSLSSLREL 432 (571)
Q Consensus 369 ~l~~l~~-----~l~~l~~L~~L~Ls~n~l~--~l~----~~l~~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L 432 (571)
.+...+. .+..-.+|+.+.+..|.+. .+. ..+..+++|+.|+|+.|.++- +...+..++.|++|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 4443322 1222245566666666554 111 122344566666666665543 23445555566666
Q ss_pred EecCCCCC
Q 008287 433 DVSFNELE 440 (571)
Q Consensus 433 ~Ls~n~l~ 440 (571)
.+..|-++
T Consensus 248 ~lnDClls 255 (388)
T COG5238 248 RLNDCLLS 255 (388)
T ss_pred cccchhhc
Confidence 66666554
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.5e-08 Score=98.56 Aligned_cols=201 Identities=22% Similarity=0.217 Sum_probs=134.1
Q ss_pred CCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCc---ccchhcCCCCccEEEcccCCCCCcchhh-cCCCCccE
Q 008287 241 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVA---VPATIGGLSSLKKLDLHANRIIELPDSI-GDLLSLVY 316 (571)
Q Consensus 241 ~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~---l~~~l~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~ 316 (571)
.+.-|.+.++.+...+.....-..++.++.|||.+|.|.+ +...+.+++.|++|+|+.|.+...-..+ ..+.+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 3446677777777665444444578899999999998885 4456788999999999999887432333 35678999
Q ss_pred EEccCCCCC--CCchhhcCCCCCCEEEccCCCCCCC---chhhcC-CcCCcEEeccCCCCC---CCccccCCCCCCcEEE
Q 008287 317 LDLRGNQIS--ALPVALSRLVRLEELDLGSNNLSSL---PDSIGS-LISLKKLIVETNDLE---ELPHTIGQCSSLRELR 387 (571)
Q Consensus 317 L~Ls~n~i~--~lp~~l~~l~~L~~L~Ls~n~l~~l---p~~l~~-l~~L~~L~L~~n~l~---~l~~~l~~l~~L~~L~ 387 (571)
|-|.++.+. .....+..+|.++.|+++.|.+..+ .+.... .+.+++|.+.+|... ++-.--..++++..+-
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 999888766 4555677788888888888855422 111222 235556665555432 1111122356777777
Q ss_pred ccCCCCCCCc--cccccCCccceeecccccCCcCc--cccCCCCCccEEEecCCCCCC
Q 008287 388 VDYNRLKALP--EAVGKIHTLEVLSVRYNNIKQLP--TTMSSLSSLRELDVSFNELES 441 (571)
Q Consensus 388 Ls~n~l~~l~--~~l~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~~L~Ls~n~l~~ 441 (571)
+..|.+.... ......+.+-.|+|+.|+|.+.. +.+.+++.|..|.++++.+.+
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 7777776442 33445566678888888888743 567888888888888887763
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.6e-09 Score=105.16 Aligned_cols=149 Identities=23% Similarity=0.270 Sum_probs=86.0
Q ss_pred CccEEEccCCCCC--CCchhhcCCCCCCEEEccCCCCC-CCchhhcCCcCCcEEeccCC-CCCCC--ccccCCCCCCcEE
Q 008287 313 SLVYLDLRGNQIS--ALPVALSRLVRLEELDLGSNNLS-SLPDSIGSLISLKKLIVETN-DLEEL--PHTIGQCSSLREL 386 (571)
Q Consensus 313 ~L~~L~Ls~n~i~--~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n-~l~~l--~~~l~~l~~L~~L 386 (571)
.|++|||++..|+ ++...+..+.+|+.|.+.++++. .+...+.+..+|+.|+++.+ .+++. .-.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3666666666555 34345556666666666666665 34445666666777776664 34322 2245678888888
Q ss_pred EccCCCCC--CCcccccc-CCccceeeccccc----CCcCccccCCCCCccEEEecCCCC-C-CCchhhhcCCCCcEEEc
Q 008287 387 RVDYNRLK--ALPEAVGK-IHTLEVLSVRYNN----IKQLPTTMSSLSSLRELDVSFNEL-E-SVPESLCFATTLVKMNI 457 (571)
Q Consensus 387 ~Ls~n~l~--~l~~~l~~-l~~L~~L~L~~n~----i~~lp~~l~~l~~L~~L~Ls~n~l-~-~i~~~l~~~~~L~~L~L 457 (571)
++++|.+. .+...+.+ -++|+.|+|+|+. ...+......+++|.+|||+.|.. + +.-..+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 88888765 12222222 2577888888872 222433447788888888887643 2 22233344455555555
Q ss_pred cCCc
Q 008287 458 GNNF 461 (571)
Q Consensus 458 ~~n~ 461 (571)
+.|.
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 5553
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=2.1e-08 Score=97.56 Aligned_cols=199 Identities=22% Similarity=0.218 Sum_probs=108.3
Q ss_pred CccEEEcccCCCCCcc--hhh-cCCCCccEEEccCCCCCC---CchhhcCCCCCCEEEccCCCCCCCchhh-cCCcCCcE
Q 008287 290 SLKKLDLHANRIIELP--DSI-GDLLSLVYLDLRGNQISA---LPVALSRLVRLEELDLGSNNLSSLPDSI-GSLISLKK 362 (571)
Q Consensus 290 ~L~~L~L~~n~l~~lp--~~l-~~l~~L~~L~Ls~n~i~~---lp~~l~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~ 362 (571)
.++.|.+.++.|.... ..+ ..++.++.|||.+|.|+. +...+.++|.|+.|+++.|.+..--..+ ....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 3444555555554321 122 335667777777777774 3345667777888888877766332333 35567788
Q ss_pred EeccCCCCC--CCccccCCCCCCcEEEccCCCCCCCc---cccccC-CccceeecccccCCc---CccccCCCCCccEEE
Q 008287 363 LIVETNDLE--ELPHTIGQCSSLRELRVDYNRLKALP---EAVGKI-HTLEVLSVRYNNIKQ---LPTTMSSLSSLRELD 433 (571)
Q Consensus 363 L~L~~n~l~--~l~~~l~~l~~L~~L~Ls~n~l~~l~---~~l~~l-~~L~~L~L~~n~i~~---lp~~l~~l~~L~~L~ 433 (571)
|.|++..+. .....+..++.+++|+++.|.+..+- ...... +.+.+|.+.+|.... .-..-.-+|++..+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 888777654 34445667778888888877554221 111111 245555555553322 111123457777888
Q ss_pred ecCCCCCCCch--hhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCC
Q 008287 434 VSFNELESVPE--SLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR 488 (571)
Q Consensus 434 Ls~n~l~~i~~--~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~ 488 (571)
+..|.+.+... .....+.+-.|+|+.+..+.-.--+.+..++.|..|.++++.|.
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 88887764422 22334445555555553322211223445556666666655444
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.53 E-value=3.4e-09 Score=107.34 Aligned_cols=269 Identities=18% Similarity=0.127 Sum_probs=169.4
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCC-CCc--ccchhcCCCCccEEEcccC-CCCCc--chhhcCCCC
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENR-IVA--VPATIGGLSSLKKLDLHAN-RIIEL--PDSIGDLLS 313 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~-i~~--l~~~l~~l~~L~~L~L~~n-~l~~l--p~~l~~l~~ 313 (571)
..++.|+++|+.-.....+......|++++.|.+.+|. +++ +-..-..+++|++|+|..| .|+.. -.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 45899999999766666677777899999999999995 443 2223357889999999996 55532 223457899
Q ss_pred ccEEEccCC-CCCC--CchhhcCCCCCCEEEccCCCCCCCchhh----cCCcCCcEEeccCC-CCCCCc--cccCCCCCC
Q 008287 314 LVYLDLRGN-QISA--LPVALSRLVRLEELDLGSNNLSSLPDSI----GSLISLKKLIVETN-DLEELP--HTIGQCSSL 383 (571)
Q Consensus 314 L~~L~Ls~n-~i~~--lp~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~L~~n-~l~~l~--~~l~~l~~L 383 (571)
|++|+++|| .|+. +-....++..++.+.+.+|.=..+ +.+ ....-+.++++..| .++... ..-..+..|
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l-e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL-EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH-HHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 999999998 3443 434455566677776665521111 111 22334555555444 333221 122456778
Q ss_pred cEEEccCCCC-CCC--ccccccCCccceeeccccc-CCcC--ccccCCCCCccEEEecCCCCC---CCchhhhcCCCCcE
Q 008287 384 RELRVDYNRL-KAL--PEAVGKIHTLEVLSVRYNN-IKQL--PTTMSSLSSLRELDVSFNELE---SVPESLCFATTLVK 454 (571)
Q Consensus 384 ~~L~Ls~n~l-~~l--~~~l~~l~~L~~L~L~~n~-i~~l--p~~l~~l~~L~~L~Ls~n~l~---~i~~~l~~~~~L~~ 454 (571)
+.|+.+++.. +.. -....+..+|+.|-+.+|+ +++. ...-.+++.|+.+++..+... .+-....+++.|+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 8888877644 221 1233566788888888884 4432 222356788888888777553 23334457788888
Q ss_pred EEccCCccCC----CccchhccCCCCccEEecccCCCC--ccchhhcCCCCCcEEEcccCC
Q 008287 455 MNIGNNFADL----RALPRSIGNLEMLEELDISNNQIR--VLPDSFRMLSRLRVLRVQENP 509 (571)
Q Consensus 455 L~L~~n~~~l----~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~N~ 509 (571)
|.++++.... ..+...-..+..|+.|.|+++... ..-+.+..+++|+.+++.+++
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 8888763222 122223345677888888888544 334567778888888887665
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.50 E-value=3.7e-07 Score=102.34 Aligned_cols=104 Identities=30% Similarity=0.468 Sum_probs=82.8
Q ss_pred CccEEEcccCCCC-CcchhhcCCCCccEEEccCCCCC-CCchhhcCCCCCCEEEccCCCCC-CCchhhcCCcCCcEEecc
Q 008287 290 SLKKLDLHANRII-ELPDSIGDLLSLVYLDLRGNQIS-ALPVALSRLVRLEELDLGSNNLS-SLPDSIGSLISLKKLIVE 366 (571)
Q Consensus 290 ~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n~i~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 366 (571)
.++.|+|++|.+. .+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+. .+|+.++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778888888887 66778888888888888888887 67778888888888888888887 678888888888888888
Q ss_pred CCCCC-CCccccCCC-CCCcEEEccCCCC
Q 008287 367 TNDLE-ELPHTIGQC-SSLRELRVDYNRL 393 (571)
Q Consensus 367 ~n~l~-~l~~~l~~l-~~L~~L~Ls~n~l 393 (571)
+|.+. .+|..+... .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 88877 667666543 4567788877754
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.50 E-value=4.4e-08 Score=94.16 Aligned_cols=226 Identities=21% Similarity=0.252 Sum_probs=150.4
Q ss_pred CCCccEEEcccCCCC-----CcchhhcCCCCccEEEccCCCCC----C-------CchhhcCCCCCCEEEccCCCCC-CC
Q 008287 288 LSSLKKLDLHANRII-----ELPDSIGDLLSLVYLDLRGNQIS----A-------LPVALSRLVRLEELDLGSNNLS-SL 350 (571)
Q Consensus 288 l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~n~i~----~-------lp~~l~~l~~L~~L~Ls~n~l~-~l 350 (571)
+..++.++|++|.|. .+...+.+-.+|+..+++.--.. . +-+.+-+|++|+.++|+.|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455566666666555 23344455556666666553222 1 2246678999999999999887 33
Q ss_pred c----hhhcCCcCCcEEeccCCCCCCCcc--------------ccCCCCCCcEEEccCCCCCCCccc-----cccCCccc
Q 008287 351 P----DSIGSLISLKKLIVETNDLEELPH--------------TIGQCSSLRELRVDYNRLKALPEA-----VGKIHTLE 407 (571)
Q Consensus 351 p----~~l~~l~~L~~L~L~~n~l~~l~~--------------~l~~l~~L~~L~Ls~n~l~~l~~~-----l~~l~~L~ 407 (571)
| +.+++.+.|++|.+++|.+..+.. ....-+.|+.+.+..|++...+.. +..-.+|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 3 347788999999999998864321 233467899999999999865532 22225899
Q ss_pred eeecccccCCc--C----ccccCCCCCccEEEecCCCCCCC-----chhhhcCCCCcEEEccCCccCCCccchhc-----
Q 008287 408 VLSVRYNNIKQ--L----PTTMSSLSSLRELDVSFNELESV-----PESLCFATTLVKMNIGNNFADLRALPRSI----- 471 (571)
Q Consensus 408 ~L~L~~n~i~~--l----p~~l~~l~~L~~L~Ls~n~l~~i-----~~~l~~~~~L~~L~L~~n~~~l~~lp~~l----- 471 (571)
++.+..|.|.. + --.+..+.+|+.|||..|.++.. ...++..+.|+.|.+..|...-......+
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 99999998864 1 13456788999999999988732 23445566788888888754443333322
Q ss_pred cCCCCccEEecccCCCC--c-----cch-hhcCCCCCcEEEcccCCCCCC
Q 008287 472 GNLEMLEELDISNNQIR--V-----LPD-SFRMLSRLRVLRVQENPLEVP 513 (571)
Q Consensus 472 ~~l~~L~~L~Ls~n~l~--~-----lp~-~l~~l~~L~~L~L~~N~l~~~ 513 (571)
...|+|..|.+.+|.+. . ++. .-..+|-|..|.+.+|.+.-.
T Consensus 269 ~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 269 KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 23678888888888554 1 222 124677788888888887643
No 48
>PLN03150 hypothetical protein; Provisional
Probab=98.49 E-value=3e-07 Score=102.99 Aligned_cols=108 Identities=20% Similarity=0.349 Sum_probs=88.8
Q ss_pred ccceeecccccCCc-CccccCCCCCccEEEecCCCCC-CCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEec
Q 008287 405 TLEVLSVRYNNIKQ-LPTTMSSLSSLRELDVSFNELE-SVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDI 482 (571)
Q Consensus 405 ~L~~L~L~~n~i~~-lp~~l~~l~~L~~L~Ls~n~l~-~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L 482 (571)
.++.|+|++|.+.+ +|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|... +.+|..++++++|+.|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls-g~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN-GSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC-CCCchHHhcCCCCCEEEC
Confidence 37788899998876 7788888999999999999887 67888888999999999988533 467888999999999999
Q ss_pred ccCCCC-ccchhhcCC-CCCcEEEcccCCCCCC
Q 008287 483 SNNQIR-VLPDSFRML-SRLRVLRVQENPLEVP 513 (571)
Q Consensus 483 s~n~l~-~lp~~l~~l-~~L~~L~L~~N~l~~~ 513 (571)
++|+++ .+|..+..+ .++..+++.+|+..|.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccC
Confidence 999888 778777653 5677889998886554
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.49 E-value=9.9e-08 Score=72.71 Aligned_cols=57 Identities=40% Similarity=0.722 Sum_probs=32.7
Q ss_pred CCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCcc-hhhcCCCCccEEEccCCC
Q 008287 267 SLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGNQ 323 (571)
Q Consensus 267 ~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~ 323 (571)
+|++|++++|++..+|. .|.++++|++|++++|.+..++ ..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666655543 5555666666666666665553 245556666666666554
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2e-07 Score=71.07 Aligned_cols=59 Identities=42% Similarity=0.664 Sum_probs=40.4
Q ss_pred CCccEEEcccCCCCCcch-hhcCCCCccEEEccCCCCCCCch-hhcCCCCCCEEEccCCCC
Q 008287 289 SSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNNL 347 (571)
Q Consensus 289 ~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~l 347 (571)
++|++|++++|++..+|. .|..+++|++|++++|.++.++. .|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 356777777777776653 56667777777777777776654 566777777777777653
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.39 E-value=2.6e-08 Score=86.48 Aligned_cols=81 Identities=30% Similarity=0.391 Sum_probs=31.5
Q ss_pred CccEEEcccCCCCCcchhhcC-CCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCC
Q 008287 290 SLKKLDLHANRIIELPDSIGD-LLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETN 368 (571)
Q Consensus 290 ~L~~L~L~~n~l~~lp~~l~~-l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 368 (571)
.|+..+|++|.+..+|..|.. .+.++.|++.+|.|+++|..+..++.|+.|+++.|.+...|..+..+.+|-.|+..+|
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 333334444444433333321 2233444444444444444444444444444444444433333333333333333333
Q ss_pred CC
Q 008287 369 DL 370 (571)
Q Consensus 369 ~l 370 (571)
.+
T Consensus 134 a~ 135 (177)
T KOG4579|consen 134 AR 135 (177)
T ss_pred cc
Confidence 33
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.38 E-value=2.5e-08 Score=86.55 Aligned_cols=110 Identities=21% Similarity=0.325 Sum_probs=84.8
Q ss_pred CccEEEcccCCCCCcch---hhcCCCCccEEEccCCCCCCCchhhcC-CCCCCEEEccCCCCCCCchhhcCCcCCcEEec
Q 008287 290 SLKKLDLHANRIIELPD---SIGDLLSLVYLDLRGNQISALPVALSR-LVRLEELDLGSNNLSSLPDSIGSLISLKKLIV 365 (571)
Q Consensus 290 ~L~~L~L~~n~l~~lp~---~l~~l~~L~~L~Ls~n~i~~lp~~l~~-l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 365 (571)
-+..++|++|.+..+++ .+....+|+..+|++|.++.+|..|.. ++.++.|++.+|.++++|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 35566777776664443 456667888889999999888886654 45788888888888888888888888888888
Q ss_pred cCCCCCCCccccCCCCCCcEEEccCCCCCCCccc
Q 008287 366 ETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA 399 (571)
Q Consensus 366 ~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~ 399 (571)
..|.+...|..+..+.++..|+..+|.+..++-.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 8888888887777788888888888877766643
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.6e-08 Score=96.96 Aligned_cols=80 Identities=33% Similarity=0.374 Sum_probs=36.8
Q ss_pred CCEEEeeCCCCC--cccchhcCCCCccEEEcccCCCC-CcchhhcCCCCccEEEccCC-CCCC--CchhhcCCCCCCEEE
Q 008287 268 LVSLDLSENRIV--AVPATIGGLSSLKKLDLHANRII-ELPDSIGDLLSLVYLDLRGN-QISA--LPVALSRLVRLEELD 341 (571)
Q Consensus 268 L~~L~Ls~n~i~--~l~~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n-~i~~--lp~~l~~l~~L~~L~ 341 (571)
|++|||+...|+ .+...+..+.+|+.|.|.++.+. .+...+.+..+|+.|||+.+ .++. +.-.+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 555555555444 23334444555555555555544 23334444455555555544 2332 112334445555555
Q ss_pred ccCCCC
Q 008287 342 LGSNNL 347 (571)
Q Consensus 342 Ls~n~l 347 (571)
++.|.+
T Consensus 267 lsWc~l 272 (419)
T KOG2120|consen 267 LSWCFL 272 (419)
T ss_pred chHhhc
Confidence 555433
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.23 E-value=4e-06 Score=87.30 Aligned_cols=128 Identities=22% Similarity=0.371 Sum_probs=67.5
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCC-CCCcccchhcCCCCccEEEcccC-CCCCcchhhcCCCCccEE
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSEN-RIVAVPATIGGLSSLKKLDLHAN-RIIELPDSIGDLLSLVYL 317 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n-~i~~l~~~l~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L 317 (571)
.+++.|++++|.+..+..+| .+|+.|++++| .++.+|..+. .+|++|++++| .+..+|. +|+.|
T Consensus 52 ~~l~~L~Is~c~L~sLP~LP------~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVLP------NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred cCCCEEEeCCCCCcccCCCC------CCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceE
Confidence 56777888877544432221 35777777775 4555565442 46777777776 5555543 35566
Q ss_pred EccCCCC---CCCchhhcCCCCCCEEEccCCC-C--CCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCC
Q 008287 318 DLRGNQI---SALPVALSRLVRLEELDLGSNN-L--SSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYN 391 (571)
Q Consensus 318 ~Ls~n~i---~~lp~~l~~l~~L~~L~Ls~n~-l--~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n 391 (571)
++..+.. ..+|. +|+.|.+.+++ . ..++.. -.++|++|.+.+|....+|..+. .+|+.|+++.+
T Consensus 118 ~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 6665543 33442 34455553322 1 111110 11466667666666544443332 46666666554
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.15 E-value=3.1e-06 Score=78.48 Aligned_cols=102 Identities=25% Similarity=0.348 Sum_probs=56.5
Q ss_pred CCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhc-CCcCCcEEeccCCCCCCCc--cccCCCCCCcEEEc
Q 008287 312 LSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIG-SLISLKKLIVETNDLEELP--HTIGQCSSLRELRV 388 (571)
Q Consensus 312 ~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~L 388 (571)
.+...+||++|.+..++ .|..+++|.+|.+++|+|+.|...+. .+++|+.|.+.+|.+..+. ..+..|++|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 35566666666666553 55666666666666666666655444 3445666666666655442 23445555666655
Q ss_pred cCCCCCCCc----cccccCCccceeecccc
Q 008287 389 DYNRLKALP----EAVGKIHTLEVLSVRYN 414 (571)
Q Consensus 389 s~n~l~~l~----~~l~~l~~L~~L~L~~n 414 (571)
-+|.++.-. ..+..+++|++||..+-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 555554321 23444555555555443
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.14 E-value=8.2e-06 Score=84.99 Aligned_cols=133 Identities=20% Similarity=0.318 Sum_probs=81.3
Q ss_pred hcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCC-CCCCCchhhcCCCCCCEEEccCC-CCCCCchhhcCCcCCcE
Q 008287 285 IGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGN-QISALPVALSRLVRLEELDLGSN-NLSSLPDSIGSLISLKK 362 (571)
Q Consensus 285 l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n-~i~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~ 362 (571)
+..+.+++.|++++|.++.+|. + -.+|++|.+++| .++.+|..+. .+|+.|++++| .+..+|. +|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccce
Confidence 4456788888888888888872 1 236888888874 5566665553 57888888887 6666664 4666
Q ss_pred EeccCCCCC---CCccccCCCCCCcEEEccCCC-C--CCCccccccCCccceeecccccCCcCccccCCCCCccEEEecC
Q 008287 363 LIVETNDLE---ELPHTIGQCSSLRELRVDYNR-L--KALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSF 436 (571)
Q Consensus 363 L~L~~n~l~---~l~~~l~~l~~L~~L~Ls~n~-l--~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~ 436 (571)
|.+.++... .+|. +|+.|.+.+++ . ..++.. -.++|++|++++|....+|..+. ..|+.|+++.
T Consensus 117 L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEEecc
Confidence 666655433 3333 45566664322 1 112211 12577788887777665554444 4677777766
Q ss_pred CC
Q 008287 437 NE 438 (571)
Q Consensus 437 n~ 438 (571)
+.
T Consensus 187 n~ 188 (426)
T PRK15386 187 EQ 188 (426)
T ss_pred cc
Confidence 53
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.10 E-value=4.8e-06 Score=77.21 Aligned_cols=104 Identities=29% Similarity=0.343 Sum_probs=59.0
Q ss_pred CcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhc-CCCCccEEEcc
Q 008287 242 TRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIG-DLLSLVYLDLR 320 (571)
Q Consensus 242 l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~Ls 320 (571)
=++++|++..+..++.+. .-......+||++|.+..++. |..++.|..|.|++|.|+.+.+.+. .+++|..|.|.
T Consensus 21 e~e~~LR~lkip~ienlg---~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLG---ATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccchhhcc---ccccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 345566665544443211 122355666777776665543 5566677777777777776644443 34566777777
Q ss_pred CCCCCCCch--hhcCCCCCCEEEccCCCCCC
Q 008287 321 GNQISALPV--ALSRLVRLEELDLGSNNLSS 349 (571)
Q Consensus 321 ~n~i~~lp~--~l~~l~~L~~L~Ls~n~l~~ 349 (571)
+|.|..+.+ .+..+++|++|.+-+|.++.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhc
Confidence 766664432 44555666666666665553
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.02 E-value=2.3e-06 Score=96.01 Aligned_cols=129 Identities=22% Similarity=0.302 Sum_probs=86.8
Q ss_pred CCccEEEcccCCCC--Ccchhh-cCCCCccEEEccCCCCC--CCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEE
Q 008287 289 SSLKKLDLHANRII--ELPDSI-GDLLSLVYLDLRGNQIS--ALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKL 363 (571)
Q Consensus 289 ~~L~~L~L~~n~l~--~lp~~l-~~l~~L~~L~Ls~n~i~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 363 (571)
.+|++|+++|...- .-|..+ ..||.|+.|.+.+-.+. ++-.-+.++++|..||+++++++.+ .+++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 56888888775432 223333 34788888888876554 2344667788888888888888877 678888888888
Q ss_pred eccCCCCCCC--ccccCCCCCCcEEEccCCCCCCCc-------cccccCCccceeecccccCCc
Q 008287 364 IVETNDLEEL--PHTIGQCSSLRELRVDYNRLKALP-------EAVGKIHTLEVLSVRYNNIKQ 418 (571)
Q Consensus 364 ~L~~n~l~~l--~~~l~~l~~L~~L~Ls~n~l~~l~-------~~l~~l~~L~~L~L~~n~i~~ 418 (571)
.+.+=.+... -..+.++++|+.||+|..+....+ +.-..+++|+.||.+++.+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7776555532 235677888888888876654332 122346777888877776654
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=7.3e-06 Score=57.77 Aligned_cols=38 Identities=39% Similarity=0.640 Sum_probs=16.1
Q ss_pred CccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCC
Q 008287 290 SLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISAL 327 (571)
Q Consensus 290 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~l 327 (571)
+|++|++++|+|+.+|..+++|++|++|++++|+|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34444444444444443344444444444444444433
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.97 E-value=5.7e-06 Score=92.93 Aligned_cols=132 Identities=20% Similarity=0.268 Sum_probs=94.7
Q ss_pred CCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCC--cccchhcCCCCccEEEcccCCCCCcchhhcCCCCccE
Q 008287 239 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIV--AVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVY 316 (571)
Q Consensus 239 ~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~--~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 316 (571)
..+|+.|+++|...-.-+|....-..+|.|+.|.+.+-.+. ++.....++++|..||+++++++.+ .++++|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 45788889988766666666556667889999998887665 2334456788899999999888888 77888888888
Q ss_pred EEccCCCCCCCc--hhhcCCCCCCEEEccCCCCCCCc-------hhhcCCcCCcEEeccCCCCC
Q 008287 317 LDLRGNQISALP--VALSRLVRLEELDLGSNNLSSLP-------DSIGSLISLKKLIVETNDLE 371 (571)
Q Consensus 317 L~Ls~n~i~~lp--~~l~~l~~L~~L~Ls~n~l~~lp-------~~l~~l~~L~~L~L~~n~l~ 371 (571)
|.+.+=.+..-. ..+.+|++|++||+|.......+ +.-..+++|+.|+.+++.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 888887666422 36677888888888876544322 11234677777777776654
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=1e-05 Score=56.99 Aligned_cols=40 Identities=45% Similarity=0.602 Sum_probs=30.4
Q ss_pred CCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCc
Q 008287 312 LSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLP 351 (571)
Q Consensus 312 ~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp 351 (571)
++|++|++++|+|+.+|..+.++++|+.|++++|.+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4688888888888888777888888888888888887664
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.90 E-value=4.6e-07 Score=92.19 Aligned_cols=270 Identities=17% Similarity=0.086 Sum_probs=175.8
Q ss_pred CCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCC-CCCcc--cchhcCCCCccEEEcccCC-CC--CcchhhcCC
Q 008287 238 SKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSEN-RIVAV--PATIGGLSSLKKLDLHANR-II--ELPDSIGDL 311 (571)
Q Consensus 238 ~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n-~i~~l--~~~l~~l~~L~~L~L~~n~-l~--~lp~~l~~l 311 (571)
.+++++.|++.++..-.-..+-..-..|++|+.|+|..| .++.. -....++++|++|+++.|. |+ .+-....++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 678889998888852222223344568999999999997 45532 2244678999999999884 33 233344567
Q ss_pred CCccEEEccCCCCCC---CchhhcCCCCCCEEEccCC-CCCCCc--hhhcCCcCCcEEeccCCCC-CCC--ccccCCCCC
Q 008287 312 LSLVYLDLRGNQISA---LPVALSRLVRLEELDLGSN-NLSSLP--DSIGSLISLKKLIVETNDL-EEL--PHTIGQCSS 382 (571)
Q Consensus 312 ~~L~~L~Ls~n~i~~---lp~~l~~l~~L~~L~Ls~n-~l~~lp--~~l~~l~~L~~L~L~~n~l-~~l--~~~l~~l~~ 382 (571)
..|+.+.+.+|.=.. +-..-..+..+..+++..+ .+++.. ..-..+..|+.|..+++.. +.. -.-..++.+
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 778888777763222 2112233445666666565 333321 1123466788888877643 221 122356789
Q ss_pred CcEEEccCCC-CC--CCccccccCCccceeecccccCCc---CccccCCCCCccEEEecCCCCC-CC-----chhhhcCC
Q 008287 383 LRELRVDYNR-LK--ALPEAVGKIHTLEVLSVRYNNIKQ---LPTTMSSLSSLRELDVSFNELE-SV-----PESLCFAT 450 (571)
Q Consensus 383 L~~L~Ls~n~-l~--~l~~~l~~l~~L~~L~L~~n~i~~---lp~~l~~l~~L~~L~Ls~n~l~-~i-----~~~l~~~~ 450 (571)
|+.|-+..|+ ++ .+...-.+.+.|+.+++..+.... +...-.+++.|+.|.|+++... +. ....+...
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 9999999886 33 222333567889999999885443 4344478899999999988543 21 23445678
Q ss_pred CCcEEEccCCccCCCccchhccCCCCccEEecccC-CCCc--cchhhcCCCCCcEEEccc
Q 008287 451 TLVKMNIGNNFADLRALPRSIGNLEMLEELDISNN-QIRV--LPDSFRMLSRLRVLRVQE 507 (571)
Q Consensus 451 ~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n-~l~~--lp~~l~~l~~L~~L~L~~ 507 (571)
.|..+.++++....+..-..+..+++|+.+++-++ .++. +-..-.++|++++..+..
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 89999999997666666667888999999999998 5553 333456788888776643
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=1.2e-05 Score=78.05 Aligned_cols=80 Identities=30% Similarity=0.300 Sum_probs=48.2
Q ss_pred CCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcc--hhhcCCCCccE
Q 008287 239 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELP--DSIGDLLSLVY 316 (571)
Q Consensus 239 ~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~ 316 (571)
+.+++.||+.||++.++. ...+++.|++|.|+-|.|+++.+ +..+++|+.|.|..|.|..+. ..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHHH----HHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 335666777777666654 34566666666666666666532 556666666666666666552 23455666666
Q ss_pred EEccCCC
Q 008287 317 LDLRGNQ 323 (571)
Q Consensus 317 L~Ls~n~ 323 (571)
|.|..|.
T Consensus 93 LWL~ENP 99 (388)
T KOG2123|consen 93 LWLDENP 99 (388)
T ss_pred HhhccCC
Confidence 6666553
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.35 E-value=9.6e-05 Score=71.50 Aligned_cols=102 Identities=26% Similarity=0.323 Sum_probs=52.1
Q ss_pred CCCcEEEccCCCCCCCccccccCCccceeecccc--cCCc-CccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEc
Q 008287 381 SSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYN--NIKQ-LPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNI 457 (571)
Q Consensus 381 ~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n--~i~~-lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L 457 (571)
..|+.|.+.+..++.+ ..+..+++|+.|.++.| ++.. ++.....+|+|++|++++|+|..+
T Consensus 43 ~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l--------------- 106 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL--------------- 106 (260)
T ss_pred cchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc---------------
Confidence 3444444444444433 12334455555555555 2222 333333345555555555554422
Q ss_pred cCCccCCCccchhccCCCCccEEecccCCCCccch----hhcCCCCCcEEEcc
Q 008287 458 GNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD----SFRMLSRLRVLRVQ 506 (571)
Q Consensus 458 ~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~ 506 (571)
..++ .+..+++|..|++.+|..+.+-+ .|.-+++|+.|+-.
T Consensus 107 -------stl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 107 -------STLR-PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred -------cccc-hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 2222 34566778888888887765532 46667777666543
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=2.6e-05 Score=75.72 Aligned_cols=99 Identities=26% Similarity=0.225 Sum_probs=74.2
Q ss_pred CCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCch--hhcCCCCCCEEE
Q 008287 264 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV--ALSRLVRLEELD 341 (571)
Q Consensus 264 ~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~--~l~~l~~L~~L~ 341 (571)
.+.+.+.|++.||.+.++. ....|+.|++|.|+-|+|+.+ ..+..|++|+.|.|..|.|.++.+ .+.++++|+.|.
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3557778888888888763 356788888898988888888 557788888888888888887754 677888888888
Q ss_pred ccCCCCCCC-c-----hhhcCCcCCcEEe
Q 008287 342 LGSNNLSSL-P-----DSIGSLISLKKLI 364 (571)
Q Consensus 342 Ls~n~l~~l-p-----~~l~~l~~L~~L~ 364 (571)
|..|....- + ..+..+++|++|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 888755421 1 2256677777774
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.15 E-value=0.00025 Score=68.67 Aligned_cols=85 Identities=28% Similarity=0.359 Sum_probs=45.0
Q ss_pred CCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccC--CCC-CcchhhcCCCCccEEEccCCCCCCCc--hhhcCCCCCC
Q 008287 264 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHAN--RII-ELPDSIGDLLSLVYLDLRGNQISALP--VALSRLVRLE 338 (571)
Q Consensus 264 ~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n--~l~-~lp~~l~~l~~L~~L~Ls~n~i~~lp--~~l~~l~~L~ 338 (571)
.+..|+.|.+.++.++++- .+..+++|++|.++.| ++. .++.....+++|++|++++|+|..+. ..+..+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3445555555555555442 2445566666666666 332 33333344566666666666665321 1344555566
Q ss_pred EEEccCCCCCC
Q 008287 339 ELDLGSNNLSS 349 (571)
Q Consensus 339 ~L~Ls~n~l~~ 349 (571)
.|++.+|..+.
T Consensus 120 ~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 120 SLDLFNCSVTN 130 (260)
T ss_pred hhhcccCCccc
Confidence 66666665443
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.90 E-value=0.00019 Score=77.76 Aligned_cols=168 Identities=24% Similarity=0.194 Sum_probs=77.0
Q ss_pred CCCCCCEEEeeCC-CCCc--ccchhcCCCCccEEEcccC--CCCCc----chhhcCCCCccEEEccCCC-CCCC--chhh
Q 008287 264 KLSSLVSLDLSEN-RIVA--VPATIGGLSSLKKLDLHAN--RIIEL----PDSIGDLLSLVYLDLRGNQ-ISAL--PVAL 331 (571)
Q Consensus 264 ~l~~L~~L~Ls~n-~i~~--l~~~l~~l~~L~~L~L~~n--~l~~l----p~~l~~l~~L~~L~Ls~n~-i~~l--p~~l 331 (571)
.++.|+.|.+.++ .+.. +-.....+++|+.|+++++ .+... ......+.+|+.|+++++. ++.. ....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3566666666655 3333 2233455566666666652 11111 1122345666666666665 4432 1122
Q ss_pred cCCCCCCEEEccCCC-CC--CCchhhcCCcCCcEEeccCCCCC---CCccccCCCCCCcEEEccCCCCCCCccccccCCc
Q 008287 332 SRLVRLEELDLGSNN-LS--SLPDSIGSLISLKKLIVETNDLE---ELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHT 405 (571)
Q Consensus 332 ~~l~~L~~L~Ls~n~-l~--~lp~~l~~l~~L~~L~L~~n~l~---~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~ 405 (571)
..+++|+.|.+.++. ++ .+......+++|++|++++|... .+.....++++|+.|.+....- +..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~---------c~~ 336 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG---------CPS 336 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---------Ccc
Confidence 235666666655554 33 22222345566666666665432 1222233455555544332211 333
Q ss_pred cceeecccccCC---c-CccccCCCCCccEEEecCCCCC
Q 008287 406 LEVLSVRYNNIK---Q-LPTTMSSLSSLRELDVSFNELE 440 (571)
Q Consensus 406 L~~L~L~~n~i~---~-lp~~l~~l~~L~~L~Ls~n~l~ 440 (571)
++.+.+.++... . ..-.+..+++|+.+.+..+.+.
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGIS 375 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhcc
Confidence 444444333211 1 1123455666666666665533
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.79 E-value=1.2e-05 Score=86.51 Aligned_cols=203 Identities=28% Similarity=0.320 Sum_probs=109.5
Q ss_pred CccEEEcccCCCCC-----cchhhcCCCCccEEEccCCCCCCC-----chhhcCC-CCCCEEEccCCCCC-----CCchh
Q 008287 290 SLKKLDLHANRIIE-----LPDSIGDLLSLVYLDLRGNQISAL-----PVALSRL-VRLEELDLGSNNLS-----SLPDS 353 (571)
Q Consensus 290 ~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~l-----p~~l~~l-~~L~~L~Ls~n~l~-----~lp~~ 353 (571)
.+..|.|.+|.+.. +...+..+++|+.|++++|.+... -..+... ..|++|++..|.++ .+.+.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 37788888888763 344567788888899999888731 1223332 45666777777665 23445
Q ss_pred hcCCcCCcEEeccCCCCCC-----Ccccc----CCCCCCcEEEccCCCCCC-----CccccccCCc-cceeecccccCCc
Q 008287 354 IGSLISLKKLIVETNDLEE-----LPHTI----GQCSSLRELRVDYNRLKA-----LPEAVGKIHT-LEVLSVRYNNIKQ 418 (571)
Q Consensus 354 l~~l~~L~~L~L~~n~l~~-----l~~~l----~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~-L~~L~L~~n~i~~ 418 (571)
+.....++.+++..|.+.. ++..+ ....++++|++.+|.++. +...+...+. +..|++.+|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 5566667777777666531 11122 234455555555555441 1112222222 3345555554443
Q ss_pred -----CccccCCC-CCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCcc--
Q 008287 419 -----LPTTMSSL-SSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVL-- 490 (571)
Q Consensus 419 -----lp~~l~~l-~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l-- 490 (571)
+...+... ..+++++++.|.|++. ....+...+..++.++.|.+++|.+..-
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~--------------------~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEK--------------------GVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCcccc--------------------chHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 12223333 3444444444444422 2234556667778888888888877732
Q ss_pred ---chhhcCCCCCcEEEcccCCCCC
Q 008287 491 ---PDSFRMLSRLRVLRVQENPLEV 512 (571)
Q Consensus 491 ---p~~l~~l~~L~~L~L~~N~l~~ 512 (571)
-..+.....+..+-+.++...+
T Consensus 308 ~~~~~~l~~~~~~~~~~l~~~~~~~ 332 (478)
T KOG4308|consen 308 ELLLEALERKTPLLHLVLGGTGKGT 332 (478)
T ss_pred HHHHHHhhhcccchhhhccccCccc
Confidence 2334444555556666554433
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.75 E-value=2.3e-05 Score=84.42 Aligned_cols=175 Identities=29% Similarity=0.388 Sum_probs=121.6
Q ss_pred CCCEEEeeCCCCCc-----ccchhcCCCCccEEEcccCCCCCc-----chhhcCC-CCccEEEccCCCCCC-----Cchh
Q 008287 267 SLVSLDLSENRIVA-----VPATIGGLSSLKKLDLHANRIIEL-----PDSIGDL-LSLVYLDLRGNQISA-----LPVA 330 (571)
Q Consensus 267 ~L~~L~Ls~n~i~~-----l~~~l~~l~~L~~L~L~~n~l~~l-----p~~l~~l-~~L~~L~Ls~n~i~~-----lp~~ 330 (571)
.+..|.|.+|.+.. +...+..+..|..|++++|++... ...+... ..|++|++..|.++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 37788888888774 334567788899999999988721 2223333 567888888887773 4556
Q ss_pred hcCCCCCCEEEccCCCCCC-----Cchhhc----CCcCCcEEeccCCCCCC-----CccccCCCCC-CcEEEccCCCCCC
Q 008287 331 LSRLVRLEELDLGSNNLSS-----LPDSIG----SLISLKKLIVETNDLEE-----LPHTIGQCSS-LRELRVDYNRLKA 395 (571)
Q Consensus 331 l~~l~~L~~L~Ls~n~l~~-----lp~~l~----~l~~L~~L~L~~n~l~~-----l~~~l~~l~~-L~~L~Ls~n~l~~ 395 (571)
+.....++.++++.|.+.. ++..+. ...++++|.+++|.++. +...+...+. +..|++..|++.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 7778888888998887742 223333 46788888888887762 2234455555 7778888888863
Q ss_pred C-----ccccccC-CccceeecccccCCc-----CccccCCCCCccEEEecCCCCCC
Q 008287 396 L-----PEAVGKI-HTLEVLSVRYNNIKQ-----LPTTMSSLSSLRELDVSFNELES 441 (571)
Q Consensus 396 l-----~~~l~~l-~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~Ls~n~l~~ 441 (571)
. ...+..+ ..++.++++.|.|.+ +...+..++.+++|.+.+|.+..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2 2334444 677889999998875 45667778888888888888763
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.70 E-value=0.0045 Score=54.17 Aligned_cols=101 Identities=20% Similarity=0.338 Sum_probs=39.2
Q ss_pred ccCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCcch-hhcCCCCccEEEccCCCCCCCch-hhcCCCCC
Q 008287 261 SIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALPV-ALSRLVRL 337 (571)
Q Consensus 261 ~~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~i~~lp~-~l~~l~~L 337 (571)
.|..+.+|+.+.+.. .+..++. .|.++++|+.+.+.++ +..++. .+..+++|+.+.+.+ .+..++. .+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 345555666666553 3444432 4555555666665553 444432 344555566666543 3333332 33445555
Q ss_pred CEEEccCCCCCCCchh-hcCCcCCcEEecc
Q 008287 338 EELDLGSNNLSSLPDS-IGSLISLKKLIVE 366 (571)
Q Consensus 338 ~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~ 366 (571)
+.+++..+ +..++.. +... +|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55555443 3333332 2232 55555443
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.49 E-value=0.0088 Score=52.30 Aligned_cols=116 Identities=16% Similarity=0.347 Sum_probs=63.7
Q ss_pred cCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCcch-hhcCCCCc
Q 008287 237 SSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPD-SIGDLLSL 314 (571)
Q Consensus 237 ~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L 314 (571)
..+++++.+.+.. .+..++ ...|..+++|+.+.+.++ +..++. .|.+++.|+.+.+.+ .+..++. .+..+++|
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~--~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIG--ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TT-TT--EEEETS-T--EE---TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred hCCCCCCEEEECC-CeeEeC--hhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 3455788888875 344444 456888989999999885 777654 678888899999976 5555543 56779999
Q ss_pred cEEEccCCCCCCCch-hhcCCCCCCEEEccCCCCCCCchh-hcCCcCC
Q 008287 315 VYLDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSLPDS-IGSLISL 360 (571)
Q Consensus 315 ~~L~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L 360 (571)
+.+++..+ +..++. .+.+. +|+.+.+.. .+..++.. |..+++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 99999775 666655 55665 899988876 45555433 4455454
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.49 E-value=0.00051 Score=74.46 Aligned_cols=107 Identities=26% Similarity=0.297 Sum_probs=52.5
Q ss_pred CCCCccEEEcccC-CCCC--cchhhcCCCCccEEEccCC--CCCCC----chhhcCCCCCCEEEccCCC-CCCCc-hhhc
Q 008287 287 GLSSLKKLDLHAN-RIIE--LPDSIGDLLSLVYLDLRGN--QISAL----PVALSRLVRLEELDLGSNN-LSSLP-DSIG 355 (571)
Q Consensus 287 ~l~~L~~L~L~~n-~l~~--lp~~l~~l~~L~~L~Ls~n--~i~~l----p~~l~~l~~L~~L~Ls~n~-l~~lp-~~l~ 355 (571)
.++.|+.|.+.++ .++. +-.....+++|+.|+++++ .+... ......+.+|+.|+++++. +++.. ..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3566666666655 3332 2233455666666666652 11111 1133344666666666655 44221 1122
Q ss_pred -CCcCCcEEeccCCC-CC--CCccccCCCCCCcEEEccCCCC
Q 008287 356 -SLISLKKLIVETND-LE--ELPHTIGQCSSLRELRVDYNRL 393 (571)
Q Consensus 356 -~l~~L~~L~L~~n~-l~--~l~~~l~~l~~L~~L~Ls~n~l 393 (571)
.+++|+.|.+.+|. ++ .+......++.|++|++++|..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 25566666655554 33 2223334556666666666544
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.94 E-value=0.01 Score=34.96 Aligned_cols=21 Identities=43% Similarity=0.645 Sum_probs=16.1
Q ss_pred CccEEecccCCCCccchhhcC
Q 008287 476 MLEELDISNNQIRVLPDSFRM 496 (571)
Q Consensus 476 ~L~~L~Ls~n~l~~lp~~l~~ 496 (571)
+|++|||++|+|+.+|..|+.
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888888888876654
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.34 E-value=0.00098 Score=63.42 Aligned_cols=87 Identities=24% Similarity=0.266 Sum_probs=53.8
Q ss_pred cCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEE
Q 008287 262 IGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELD 341 (571)
Q Consensus 262 ~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~ 341 (571)
+..+...+.||++.|++..+...|.-++.|..|+++.|.+..+|..++.+..+..+++..|..+..|.++++.+++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 34455666666666666555444555556666666666666666666666666666666666666666666666666666
Q ss_pred ccCCCCC
Q 008287 342 LGSNNLS 348 (571)
Q Consensus 342 Ls~n~l~ 348 (571)
+-+|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 6665543
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.33 E-value=0.014 Score=34.32 Aligned_cols=15 Identities=53% Similarity=1.094 Sum_probs=5.9
Q ss_pred ccEEEccCCCCCCCc
Q 008287 314 LVYLDLRGNQISALP 328 (571)
Q Consensus 314 L~~L~Ls~n~i~~lp 328 (571)
|++|+|++|+|+.+|
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 334444444333333
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.44 E-value=0.0022 Score=61.15 Aligned_cols=87 Identities=22% Similarity=0.206 Sum_probs=52.0
Q ss_pred ccCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCcc
Q 008287 236 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLV 315 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~ 315 (571)
+...+..+.|+++.+..-..+ ..|..++.|..|+++.|.+..+|..+.....++.++++.|+.+..|.+++.+++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~---~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLG---KNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHhhc---cchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 334445566666665443322 34455556666666666666666666666666666666666666666666666666
Q ss_pred EEEccCCCCC
Q 008287 316 YLDLRGNQIS 325 (571)
Q Consensus 316 ~L~Ls~n~i~ 325 (571)
++++.+|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 6666666543
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.37 E-value=0.052 Score=29.74 Aligned_cols=17 Identities=47% Similarity=0.737 Sum_probs=8.5
Q ss_pred CCccEEecccCCCCccc
Q 008287 475 EMLEELDISNNQIRVLP 491 (571)
Q Consensus 475 ~~L~~L~Ls~n~l~~lp 491 (571)
++|+.|+|++|+|+.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35667777777766654
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.55 E-value=0.079 Score=29.02 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=4.3
Q ss_pred ccEEEccCCCCCC
Q 008287 314 LVYLDLRGNQISA 326 (571)
Q Consensus 314 L~~L~Ls~n~i~~ 326 (571)
|++|+|++|+++.
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444433
No 79
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=88.59 E-value=0.36 Score=61.08 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=33.0
Q ss_pred ecccCCCCccch-hhcCCCCCcEEEcccCCCCCCChH
Q 008287 481 DISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 481 ~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~ 516 (571)
||++|+|+.||. .|..+++|+.|+|++|||.|+|..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 689999999985 788999999999999999999974
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.46 E-value=0.39 Score=29.23 Aligned_cols=20 Identities=55% Similarity=0.770 Sum_probs=13.6
Q ss_pred CCCccEEecccCCCCccchh
Q 008287 474 LEMLEELDISNNQIRVLPDS 493 (571)
Q Consensus 474 l~~L~~L~Ls~n~l~~lp~~ 493 (571)
+++|+.|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777653
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.46 E-value=0.39 Score=29.23 Aligned_cols=20 Identities=55% Similarity=0.770 Sum_probs=13.6
Q ss_pred CCCccEEecccCCCCccchh
Q 008287 474 LEMLEELDISNNQIRVLPDS 493 (571)
Q Consensus 474 l~~L~~L~Ls~n~l~~lp~~ 493 (571)
+++|+.|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777653
No 82
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=88.13 E-value=2.8 Score=44.42 Aligned_cols=44 Identities=32% Similarity=0.368 Sum_probs=30.2
Q ss_pred ccCCCCccEEecccCCCC-----ccchhhcCCCCCcEEEcccCCCCCCC
Q 008287 471 IGNLEMLEELDISNNQIR-----VLPDSFRMLSRLRVLRVQENPLEVPP 514 (571)
Q Consensus 471 l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~N~l~~~~ 514 (571)
...-+.+.+|++++|... -+|..+.....++.+..+.|..+..+
T Consensus 436 l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~~g 484 (553)
T KOG4242|consen 436 LLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPEDPG 484 (553)
T ss_pred hccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccccc
Confidence 344567888888888666 34556667777888887777765543
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.03 E-value=0.57 Score=28.49 Aligned_cols=18 Identities=50% Similarity=0.615 Sum_probs=8.8
Q ss_pred CCccEEEccCCCCCCCch
Q 008287 312 LSLVYLDLRGNQISALPV 329 (571)
Q Consensus 312 ~~L~~L~Ls~n~i~~lp~ 329 (571)
++|++|+|++|+|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555554443
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.03 E-value=0.57 Score=28.49 Aligned_cols=18 Identities=50% Similarity=0.615 Sum_probs=8.8
Q ss_pred CCccEEEccCCCCCCCch
Q 008287 312 LSLVYLDLRGNQISALPV 329 (571)
Q Consensus 312 ~~L~~L~Ls~n~i~~lp~ 329 (571)
++|++|+|++|+|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555554443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.72 E-value=0.41 Score=45.12 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=29.3
Q ss_pred CCCccEEecccC-CCCccc-hhhcCCCCCcEEEcccCCC
Q 008287 474 LEMLEELDISNN-QIRVLP-DSFRMLSRLRVLRVQENPL 510 (571)
Q Consensus 474 l~~L~~L~Ls~n-~l~~lp-~~l~~l~~L~~L~L~~N~l 510 (571)
.++|+.|+|++| +|++-. .++..+++|+.|.|.+-+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 578999999988 888553 5788889999998877554
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.66 E-value=1.2 Score=27.26 Aligned_cols=18 Identities=50% Similarity=0.826 Sum_probs=14.6
Q ss_pred CCccEEecccCCCCccch
Q 008287 475 EMLEELDISNNQIRVLPD 492 (571)
Q Consensus 475 ~~L~~L~Ls~n~l~~lp~ 492 (571)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467888888888888886
No 87
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.27 E-value=2.7 Score=43.70 Aligned_cols=37 Identities=32% Similarity=0.609 Sum_probs=30.1
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 008287 15 IMRIHKSLPERPGIEEIEAAKTLIRNVEKEDQARVESIARQ 55 (571)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (571)
+.|+.+| .| .|+.+||-.||++.=+|||+|++.|.+.
T Consensus 178 L~rLLkS--n~--PeDLqaANkLIK~lVkeee~k~eKiskR 214 (594)
T KOG1086|consen 178 LARLLKS--NH--PEDLQAANKLIKTLVKEEEHKLEKISKR 214 (594)
T ss_pred HHHHHhc--CC--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554 33 4899999999999999999999999854
No 88
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=74.39 E-value=11 Score=39.13 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Q 008287 30 EIEAAKTLIRNVEKEDQARVESIA 53 (571)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~ 53 (571)
|||.-++-+..|+++-+.++...+
T Consensus 261 EveRlrt~l~~Aqk~~~ek~~qy~ 284 (552)
T KOG2129|consen 261 EVERLRTYLSRAQKSYQEKLMQYR 284 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666667777777776665554
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.54 E-value=3.6 Score=25.29 Aligned_cols=17 Identities=53% Similarity=0.792 Sum_probs=11.9
Q ss_pred CCCccEEecccCCCCcc
Q 008287 474 LEMLEELDISNNQIRVL 490 (571)
Q Consensus 474 l~~L~~L~Ls~n~l~~l 490 (571)
+.+|+.|+|++|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35677777777777655
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.84 E-value=2.4 Score=45.90 Aligned_cols=38 Identities=26% Similarity=0.245 Sum_probs=19.1
Q ss_pred CCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCC
Q 008287 239 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSEN 276 (571)
Q Consensus 239 ~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n 276 (571)
.+.+..++|++|.+.+++.+.......++|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34455555555555554444444444455555555555
No 91
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=67.17 E-value=5.4 Score=31.08 Aligned_cols=28 Identities=50% Similarity=0.684 Sum_probs=20.0
Q ss_pred hHHHHHHHHH----HHhhcCCCC--CChhHHHHH
Q 008287 7 SIDEAVEEIM----RIHKSLPER--PGIEEIEAA 34 (571)
Q Consensus 7 ~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~ 34 (571)
+|+.+|+||. |+-.+||.| |---|+|||
T Consensus 44 aF~~AV~eva~at~~LL~~L~~~~pP~~R~~~~a 77 (78)
T PF10041_consen 44 AFDRAVAEVAAATRRLLDSLPTRAPPRRREEEAA 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCCCccHhhhc
Confidence 7888888886 566788866 555566665
No 92
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=66.90 E-value=2.5 Score=25.03 Aligned_cols=14 Identities=64% Similarity=0.776 Sum_probs=5.8
Q ss_pred CCccEEecccCCCC
Q 008287 475 EMLEELDISNNQIR 488 (571)
Q Consensus 475 ~~L~~L~Ls~n~l~ 488 (571)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555443
No 93
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.17 E-value=1.7 Score=41.10 Aligned_cols=71 Identities=28% Similarity=0.205 Sum_probs=33.0
Q ss_pred chHHhhhhhccccCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCC-CCCcc-cchhcCCCCccEEEccc
Q 008287 225 LSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSEN-RIVAV-PATIGGLSSLKKLDLHA 298 (571)
Q Consensus 225 l~~~~~~~l~~~~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n-~i~~l-~~~l~~l~~L~~L~L~~ 298 (571)
|...++..+. .++.++.|.+.+|.--+-..+.-.-.-.++|+.|+|++| +|++- -..+..+++|+.|.|.+
T Consensus 113 I~~eGle~L~---~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 113 IMYEGLEHLR---DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHHHHHHHh---ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 4444444433 344566666666522211111111123456666666666 35532 12344555555555554
No 94
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=57.37 E-value=16 Score=32.57 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=9.5
Q ss_pred HHHHHHhhchhccc
Q 008287 68 VLQEMQKNLVYFQS 81 (571)
Q Consensus 68 ~~~~~~~~~~~~~~ 81 (571)
+-.|||++++-|=+
T Consensus 40 ~y~~a~r~YLVFL~ 53 (147)
T PF06112_consen 40 EYREAQRNYLVFLI 53 (147)
T ss_pred HHHHhhhchhhhhh
Confidence 34677888887743
No 95
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=57.18 E-value=21 Score=34.66 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.9
Q ss_pred HHHHHHhhhhhhhhHHHhHHHHHHhhhccccCCC
Q 008287 83 EQKREALKLLDLENVHALFDEYIQRASQCLASSS 116 (571)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ss~~ 116 (571)
+|..--.+|.+||+.|+-.+++|+||-.+.-.+.
T Consensus 37 kq~~v~~~l~eLe~~~~el~~~i~~~k~~~~~~~ 70 (236)
T PF12269_consen 37 KQQKVRNRLQELEKRFKELEAIIARAKQFTVDQD 70 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 3444456789999999999999999998887664
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.95 E-value=6.6 Score=42.60 Aligned_cols=62 Identities=31% Similarity=0.380 Sum_probs=37.3
Q ss_pred CCCCCCCEEEeeCCCCCccc---chhcCCCCccEEEcccC--CCCCcchhhc--CCCCccEEEccCCCCC
Q 008287 263 GKLSSLVSLDLSENRIVAVP---ATIGGLSSLKKLDLHAN--RIIELPDSIG--DLLSLVYLDLRGNQIS 325 (571)
Q Consensus 263 ~~l~~L~~L~Ls~n~i~~l~---~~l~~l~~L~~L~L~~n--~l~~lp~~l~--~l~~L~~L~Ls~n~i~ 325 (571)
.+.+.+..++|++|++..+. ..-...++|+.|+|++| .+...+ .+. +...|++|-+.+|.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccc
Confidence 35667777777777766442 22345577777788777 333221 222 2345777777777766
No 97
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=53.33 E-value=28 Score=33.32 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHhhcCC-CCCChhHHH---HHHHHHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhhchhcc
Q 008287 7 SIDEAVEEIMRIHKSLP-ERPGIEEIE---AAKTLIRNVEKEDQARVESIARQTKSPDVPEELFMVLQEMQKNLVYFQ 80 (571)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (571)
++++.|..-.++.|++| +|+++=|-= +-+++-..+.+.|.. +...+.+..+.++-+++||.++.+-.|-
T Consensus 23 ~~~~lvk~al~lL~~lPaaR~AVley~~~vf~eaV~~~~~~~E~~-----~~~~~~~~~~~~~~~ai~ei~~~L~~fv 95 (213)
T PF14837_consen 23 SVEDLVKCALSLLRSLPAARDAVLEYFGLVFDEAVHLYLSPKEND-----AQNNKQQQDEADLDEAIQEIHDVLSRFV 95 (213)
T ss_pred cHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcccccCCCCccHHHHHHHHHHHHHHHH
Confidence 66788888899999999 899987721 223443344444321 1145666777889999999998887764
No 98
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=48.40 E-value=66 Score=28.02 Aligned_cols=65 Identities=18% Similarity=0.353 Sum_probs=36.6
Q ss_pred hhhhhHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHhhcCCC--CChhHHHHHHHHHHhhc
Q 008287 3 SCVQSIDEAVEEIMRIHKSLPERPGIEEIEAAKTLIRNVEKEDQARVESIARQTKSP--DVPEELFMVLQEMQKNL 76 (571)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 76 (571)
.|++.+--+|.||+=|| |.+|.-|+|..+-..+...-. +|..-.+..... .++-+++ .||+++..
T Consensus 42 pcae~I~~aV~~m~~Lf---P~~~~~e~vr~~L~~L~~~~~----~Lq~eC~~~~~~~~~~~~~~~--t~qvi~~A 108 (123)
T PF12205_consen 42 PCAERIRSAVTEMAALF---PKDPRSETVRSSLRQLTSSAY----RLQAECQKAQPEDDAVDIQLV--TQQVIQCA 108 (123)
T ss_dssp HHHHHHHHHHHHHHHTS----SSB--HHHHHHHHHHHHHHH----HHHHHHHS---S--SS-HHHH--HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC---CCccCChHHHHHHHHHHHHHH----HHHHHhcccCCCCCchhHHHH--HHHHHHHH
Confidence 47778888999999988 889988999888665544332 233223222222 3444444 66766543
No 99
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=47.93 E-value=14 Score=22.90 Aligned_cols=13 Identities=38% Similarity=0.503 Sum_probs=6.7
Q ss_pred CCcEEEcccCCCC
Q 008287 499 RLRVLRVQENPLE 511 (571)
Q Consensus 499 ~L~~L~L~~N~l~ 511 (571)
+|+.|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 3455555555554
No 100
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=47.74 E-value=1e+02 Score=30.22 Aligned_cols=91 Identities=19% Similarity=0.330 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhHHH---HHHHHHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhhchhccchH
Q 008287 7 SIDEAVEEIMRIHKSLPERPGIEEIE---AAKTLIRNVEKEDQARVESIARQTKSPDVPEELFMVLQEMQKNLVYFQSKE 83 (571)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (571)
.+++++++|...... |..|...+.. .+...+..+|+.-|+...+|-+..+ ....-..-|+++||..+..-...
T Consensus 155 ~~~ei~~~i~~~~~~-~~~~~~~~~~~~~~~~~~l~~ld~~~~~~i~~~~~~~~---~~~~~~~~l~~~r~~f~~~~~~~ 230 (249)
T TIGR03574 155 DYNEILEEILEISEN-KLKIEKPKKPKRRTDENILNKIDKRTRQIVGELIKTGK---LDKELIKKLSELRKEFLKSIKDI 230 (249)
T ss_pred CHHHHHHHHHHHhhc-cCChhhhhhhcccccccHHHHHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHhhhh
Confidence 457888888876544 2336554442 3467889999999999999987533 23455788999999988553221
Q ss_pred HHHHHhhhhhhhhHHHhHHHHH
Q 008287 84 QKREALKLLDLENVHALFDEYI 105 (571)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~ 105 (571)
+ ..=.+.+++-.+|-+++
T Consensus 231 ~----~~~~~~~~~~~~f~~~l 248 (249)
T TIGR03574 231 K----AEKEDFRRVEKEFKDYL 248 (249)
T ss_pred h----hhhhHHHHHHHHHHHHh
Confidence 1 22345778888887765
No 101
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=46.91 E-value=13 Score=22.50 Aligned_cols=14 Identities=43% Similarity=0.527 Sum_probs=7.7
Q ss_pred CCccEEecccC-CCC
Q 008287 475 EMLEELDISNN-QIR 488 (571)
Q Consensus 475 ~~L~~L~Ls~n-~l~ 488 (571)
++|++|+|++| +|+
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 45566666655 344
No 102
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=46.38 E-value=96 Score=34.27 Aligned_cols=89 Identities=26% Similarity=0.383 Sum_probs=59.3
Q ss_pred hhhhhHHHHHHHHHHHhhcCCCCCC-hhHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhhchhcc
Q 008287 3 SCVQSIDEAVEEIMRIHKSLPERPG-IEEIEAAKTLIRNVEKEDQARVESIARQTKSPDV-PEELFMVLQEMQKNLVYFQ 80 (571)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 80 (571)
.|+-.+.++..||-++...++.=|. .|+|| .|+..+.+..+--+| |+|+....++|+.-+....
T Consensus 273 ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve--------------~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~ 338 (557)
T COG0497 273 EALYELEEASEELRAYLDELEFDPNRLEEVE--------------ERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLD 338 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 3555777888888888888887664 45555 355555554444555 7889999999999988888
Q ss_pred chHHHHHHhhhhhhhhHHHhHHHHHHhhh
Q 008287 81 SKEQKREALKLLDLENVHALFDEYIQRAS 109 (571)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 109 (571)
..+++.++++- .+-.++.++.+-|.
T Consensus 339 ~~~~~~~~Le~----~~~~l~~~~~~~A~ 363 (557)
T COG0497 339 NSEESLEALEK----EVKKLKAELLEAAE 363 (557)
T ss_pred hhhhHHHHHHH----HHHHHHHHHHHHHH
Confidence 88887777652 23334444444444
No 103
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=44.59 E-value=10 Score=28.99 Aligned_cols=14 Identities=43% Similarity=0.869 Sum_probs=12.4
Q ss_pred hhccchHHHHHHhh
Q 008287 77 VYFQSKEQKREALK 90 (571)
Q Consensus 77 ~~~~~~~~~~~~~~ 90 (571)
++|+++|+||+|++
T Consensus 53 ~YFK~k~drr~~a~ 66 (68)
T PF04971_consen 53 LYFKIKEDRRKAAR 66 (68)
T ss_pred hhhhhhHhhhHhhc
Confidence 38999999999975
No 104
>KOG4339 consensus RPEL repeat-containing protein [General function prediction only]
Probab=40.79 E-value=30 Score=37.18 Aligned_cols=42 Identities=33% Similarity=0.488 Sum_probs=34.5
Q ss_pred HHH-HHHhhcCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHh
Q 008287 13 EEI-MRIHKSLPERPGIEEIEAAKTLIRNVEKEDQARVESIAR 54 (571)
Q Consensus 13 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (571)
+-| ||+-|-|-.||..||.|-=-=|=+.-+.|||+.-+++.|
T Consensus 410 qqIG~kLiRRLSqRPT~EELEqRNILK~kn~~~eqe~k~E~k~ 452 (533)
T KOG4339|consen 410 QQIGTKLIRRLSQRPTPEELEQRNILKRKNEAEEQEAKEEKKR 452 (533)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHhhhhcccChhhHHHHHHHHHH
Confidence 345 999999999999999998776766777888877777764
No 105
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=37.55 E-value=1.3e+02 Score=32.45 Aligned_cols=59 Identities=27% Similarity=0.217 Sum_probs=28.9
Q ss_pred ccEEEecCCCCCCCc----hhhhcCCCCcEEEccCCccCCCc---cchhccCCCCccEEecccCCC
Q 008287 429 LRELDVSFNELESVP----ESLCFATTLVKMNIGNNFADLRA---LPRSIGNLEMLEELDISNNQI 487 (571)
Q Consensus 429 L~~L~Ls~n~l~~i~----~~l~~~~~L~~L~L~~n~~~l~~---lp~~l~~l~~L~~L~Ls~n~l 487 (571)
+.++.++.|.+..-+ ..+...+.+..|++++|..+... +|.....-.+++.+..+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 455666666655222 23344566777777776433322 333333333444444444433
No 106
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=35.48 E-value=31 Score=24.79 Aligned_cols=15 Identities=47% Similarity=0.696 Sum_probs=12.3
Q ss_pred CCCCChhHHHHHHHH
Q 008287 23 PERPGIEEIEAAKTL 37 (571)
Q Consensus 23 ~~~~~~~~~~~~~~~ 37 (571)
|+.||-||+.|++.-
T Consensus 6 ~~qpS~eE~k~~e~~ 20 (49)
T PF10642_consen 6 PPQPSEEEIKAAEAQ 20 (49)
T ss_pred CCCCCHHHHHHHHHH
Confidence 689999999987643
No 107
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.59 E-value=78 Score=29.02 Aligned_cols=49 Identities=35% Similarity=0.517 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhcCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 008287 9 DEAVEEIMRIHKSLPERPGIEEIEAAKTLIRNVEKEDQARVESIARQTKSPDVPEELFMVLQEM 72 (571)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (571)
|+|+.|.|-.|- . -++-.-++||+|+.+|.. +-+||.--.|+|.+|.|+
T Consensus 131 D~Alt~~l~~~P------~-aDrq~LR~LvRna~kE~a--------~NKPPks~ReifQ~lk~l 179 (187)
T COG3028 131 DGALTEFLNQYP------D-ADRQQLRTLIRNAKKEQA--------QNKPPKSFREIFQYLKEL 179 (187)
T ss_pred chHHHHHHHHCC------c-ccHHHHHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHH
Confidence 456666666552 2 356778899999988865 678998899999999875
No 108
>PRK05255 hypothetical protein; Provisional
Probab=34.40 E-value=96 Score=28.70 Aligned_cols=50 Identities=34% Similarity=0.479 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 008287 8 IDEAVEEIMRIHKSLPERPGIEEIEAAKTLIRNVEKEDQARVESIARQTKSPDVPEELFMVLQEM 72 (571)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (571)
-+++++|++-.|- .. ++..=+.+|++|.+|-. ..++|.-..+||..|+++
T Consensus 120 ~d~al~e~~~~~P------~~-DrQ~LRqLiR~A~kE~~--------~~kppk~~R~LF~~Lr~~ 169 (171)
T PRK05255 120 GDDALTEFLEEYP------DA-DRQQLRQLIRNAKKEKA--------QNKPPKSFRELFQYLREL 169 (171)
T ss_pred CHHHHHHHHHHCc------hh-hHHHHHHHHHHHHHHHH--------cCCCchhHHHHHHHHHHH
Confidence 4678899998883 23 67788999999999854 357888889999999874
No 109
>PF08944 p47_phox_C: NADPH oxidase subunit p47Phox, C terminal domain; InterPro: IPR015039 The C-terminal domain of the phagocyte NADPH oxidase subunit p47Phox contains conserved PxxP motifs that allow binding to SH3 domains, with subsequent activation of the NADPH oxidase, and generation of superoxide, which plays a crucial role in host defence against microbial infection []. ; PDB: 1K4U_P 1UEC_A.
Probab=34.40 E-value=17 Score=26.93 Aligned_cols=12 Identities=42% Similarity=0.614 Sum_probs=4.0
Q ss_pred cCCCCCChhHHH
Q 008287 21 SLPERPGIEEIE 32 (571)
Q Consensus 21 ~~~~~~~~~~~~ 32 (571)
-.||||+.||+-
T Consensus 30 ~VPPRPS~~~IL 41 (58)
T PF08944_consen 30 AVPPRPSPELIL 41 (58)
T ss_dssp -------HHHHH
T ss_pred CCCCCCCHHHHH
Confidence 479999999974
No 110
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=34.35 E-value=2.5e+02 Score=25.37 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=43.7
Q ss_pred HHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhhchhccchHHHHHHhhhhhhhhHHHhHHHHHHhhhccccCCC
Q 008287 37 LIRNVEKEDQARVESIARQTKSPDVPEELFMVLQEMQKNLVYFQSKEQKREALKLLDLENVHALFDEYIQRASQCLASSS 116 (571)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ss~~ 116 (571)
......+=-.+|.+++++..+-|.|- +....+.|+=+. |=..=-.-++|+++.+++.-|+|.+.=.-+-.|-
T Consensus 71 ~~~~i~~Y~~~Ra~~v~k~~K~p~v~-DY~~~v~e~Dek-------~~~~lr~~~~elRn~Y~~l~D~i~KN~eKi~~Pr 142 (150)
T PF02252_consen 71 FLDQISKYFSARAKAVSKAAKYPHVE-DYRQAVHELDEK-------EYISLRLIVLELRNNYATLYDIISKNFEKIKKPR 142 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTBT-HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-S-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCCC
Confidence 33444444467788888888888883 444455544322 1111224678999999999999988766665554
No 111
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=33.83 E-value=1.6e+02 Score=31.05 Aligned_cols=70 Identities=21% Similarity=0.250 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHh-hcCCC--CChhHHHHHHHHHHh
Q 008287 5 VQSIDEAVEEIMRIHKSLPERPGIEEIEAAKTLIRNVEKEDQARVESIAR-QTKSP--DVPEELFMVLQEMQK 74 (571)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~ 74 (571)
|.+++++|+|.-+.|.+=-.||--=-...-+++-+.++.-|+.-.+|+++ ..++. .+..|+..++.|.+=
T Consensus 1 m~~~~~~v~~~R~~F~sGrtr~~efR~~QL~~L~r~i~e~e~~i~~Al~~DL~k~~~es~~~Ev~~~~~~i~~ 73 (477)
T KOG2456|consen 1 MSAISETVRRLRLAFSSGRTRPLEFRKQQLEALYRMIQENEKEIIEALAADLHKPELESYLNEVGYVLNEIRY 73 (477)
T ss_pred CccHHHHHHHHHHHHhcCCcCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 56788999999999999888998777788888999999999999999985 33333 777788888877653
No 112
>TIGR02774 rexB_recomb ATP-dependent nuclease subunit B. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RecAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. The partner may be designated AddB, as in Bacillus and in alphaproteobacteria, or RexB as in Streptococcus and Lactococcus. Note, however, that RexB proteins lack an N-terminal GxxGxGK[ST] ATP-binding motif found in Bacillus subtilis and related species, and this difference may be important; this model represents specifically RexB proteins as found in Streptococcus and Lactococcus.
Probab=33.00 E-value=1.6e+02 Score=35.68 Aligned_cols=85 Identities=19% Similarity=0.308 Sum_probs=71.1
Q ss_pred CCCCCChhHHHHHHHHHHhhhhHHH-HHHHHHHhhcCCCCChhHHHHHHHHHHhhchhccchHHHHHHhhhhhhhhHHHh
Q 008287 22 LPERPGIEEIEAAKTLIRNVEKEDQ-ARVESIARQTKSPDVPEELFMVLQEMQKNLVYFQSKEQKREALKLLDLENVHAL 100 (571)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (571)
..+||-++++-.++=+=+.++ |-+ ..|.-.++....++.=+++-+++.|+|+.=|.-...++-.++.||-||--++.-
T Consensus 74 ~~~~~~L~~~Gk~Mll~~il~-e~~~~eL~~f~~~~~~~GFi~~l~~~i~Elk~~~i~pe~L~~~~~~~Kl~Dl~lIy~~ 152 (1076)
T TIGR02774 74 LPAKTTLDDIGLAMIFYRALA-QLEPGDLKVYGRLKQDPQFIQQLVELYKELQKSQLSILDLENLTSPDKREDLLAIFEK 152 (1076)
T ss_pred CCCCCcccHHHHHHHHHHHHH-HcChhhhHHHHhhcCCccHHHHHHHHHHHHHHcCCCHHHHHHHhHHHhHHHHHHHHHH
Confidence 348999999877765544444 455 678888998999999999999999999999988777777779999999999999
Q ss_pred HHHHHHh
Q 008287 101 FDEYIQR 107 (571)
Q Consensus 101 ~~~~~~~ 107 (571)
|++.++.
T Consensus 153 f~~~l~~ 159 (1076)
T TIGR02774 153 VTAYLNQ 159 (1076)
T ss_pred HHHHHHh
Confidence 9998863
No 113
>PF11418 Scaffolding_pro: Phi29 scaffolding protein; InterPro: IPR024374 This protein is also referred to as Gp7. The protein contains a DNA-binding function and may have a role in mediating the structural transition from prohead to mature virus and also scaffold release [].Gp7 is arranged within the capsid as a series of concentric shells [].; PDB: 1NOH_C 1NO4_C 3MTU_E 3OA7_A.
Probab=31.61 E-value=70 Score=25.60 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=29.0
Q ss_pred ChhHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhhchhccch
Q 008287 27 GIEEIEAAKTLIRNVEKEDQARVESIARQTKSPDVPEELFMVLQEMQKNLVYFQSK 82 (571)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (571)
+.||-||--+.+.+.+.++. |--..||++|.+++.|++-
T Consensus 3 ~~ee~ed~LnkL~npEl~~s-----------------ErTeaLqqlr~~~~sf~sE 41 (97)
T PF11418_consen 3 SLEEHEDILNKLGNPELTES-----------------ERTEALQQLRESYTSFHSE 41 (97)
T ss_dssp -HHHHHHHHHHHH-TTS-HH-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCcccchh-----------------HHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888877 4445689999999999763
No 114
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues. This domain inhibits pectinesterase/pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex []. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein []. This domain is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical in structure [].; GO: 0004857 enzyme inhibitor activity, 0030599 pectinesterase activity; PDB: 1X90_A 1X8Z_C 1X91_A 1XG2_B 1RJ4_D 2CJ4_B 2XQR_F 2CJ7_A 2CJ8_A 2CJ6_A ....
Probab=31.61 E-value=1.1e+02 Score=26.86 Aligned_cols=68 Identities=15% Similarity=0.264 Sum_probs=46.3
Q ss_pred chhhhhHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 008287 2 ESCVQSIDEAVEEIMRIHKSLPERPGIEEIEAAKTLIRNVEKEDQARVESIARQTKSPDVPEELFMVLQEMQ 73 (571)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (571)
+.|.+.++++|.++.+..+.| . +.-.+.+.|.+.+..+-..-+.+.+.+. ...++++..+.....+++
T Consensus 76 ~~C~~~y~~a~~~l~~a~~~l-~-~~~~~~~~~~~~lsaa~~~~~tC~~~f~--~~~~~~~~~l~~~~~~~~ 143 (152)
T PF04043_consen 76 QDCQELYDDAVDSLQRALEAL-N-SKNGDYDDARTWLSAALTNQDTCEDGFE--EAGSPVKSPLVQRNDNVE 143 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHT-HHHHHHHHHHHHHHHHHHHHHC---TTSSS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh-h-cccchhHHHHHHHHHHHHHHHHHHHHhc--ccCCCccchHHHHHHHHH
Confidence 457778888999999888888 4 6666778888888888888888888875 344556666655554444
No 115
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=31.60 E-value=26 Score=23.14 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhcCCCCCChhHHH
Q 008287 8 IDEAVEEIMRIHKSLPERPGIEEIE 32 (571)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (571)
..+||+|+-|.+..|-.| |+|||
T Consensus 12 nV~AvqeLck~t~~Le~r--I~ele 34 (36)
T PF13887_consen 12 NVGAVQELCKLTDNLETR--IDELE 34 (36)
T ss_pred HHHHHHHHHHHhccHHHH--HHHHh
Confidence 357889999998888776 66666
No 116
>COG5423 Predicted metal-binding protein [Function unknown]
Probab=30.28 E-value=68 Score=28.65 Aligned_cols=43 Identities=37% Similarity=0.622 Sum_probs=32.7
Q ss_pred hhcCCCCChh--HHHHHHHHHHhhch-hccc------hHHHHHHhhhhhhhh
Q 008287 54 RQTKSPDVPE--ELFMVLQEMQKNLV-YFQS------KEQKREALKLLDLEN 96 (571)
Q Consensus 54 ~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~ 96 (571)
|..++|.||. |--.+|+|-|+++. -|.. .||||.-.+++|+|+
T Consensus 48 rlsCPPhvps~~EfreilkeYr~alL~kfk~dt~~~eeE~k~~~~~mlelEk 99 (167)
T COG5423 48 RLSCPPHVPSIEEFREILKEYRRALLVKFKIDTSEDEEEKKRSLRKMLELEK 99 (167)
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHHHH
Confidence 4568999995 88899999999976 4532 267777777888875
No 117
>PHA01812 hypothetical protein
Probab=29.78 E-value=80 Score=25.33 Aligned_cols=44 Identities=34% Similarity=0.422 Sum_probs=39.4
Q ss_pred HHHHHHHhhchhccchHHHHHHhhhhhhhhHHHhHHHHHHhhhc
Q 008287 67 MVLQEMQKNLVYFQSKEQKREALKLLDLENVHALFDEYIQRASQ 110 (571)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 110 (571)
++|-.-+.++++|.-.|+.||-.+|-||-.-+.|=.+.|-||=.
T Consensus 6 dilsrhqntlarfefeekerefiklselvekygmkkeyivralf 49 (122)
T PHA01812 6 DILSRHQNTLARFEFEEKEREFIKLSELVEKYGMKKEYIVRALF 49 (122)
T ss_pred HHHHHhhhhHhheeeHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 56777788999999999999999999999999999999999973
No 118
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=29.54 E-value=1.1e+02 Score=31.60 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 008287 28 IEEIEAAKTLIRNVEKEDQARVESIARQTKSPDVPEELFMVLQE 71 (571)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (571)
..|||||+.--.+|=++|+.++-.-.....-+.|.+|-.--|||
T Consensus 141 l~evE~ak~~yh~ack~EksA~~re~n~kaDsSvspeq~kKlqd 184 (472)
T KOG2856|consen 141 LKEVEAAKKAYHAACKEEKSALTREQNAKADSSVSPEQLKKLQD 184 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCccCCHHHHHHHHH
Confidence 57999999999999999998777666556667888887776654
No 119
>PF13945 NST1: Salt tolerance down-regulator
Probab=28.93 E-value=2.3e+02 Score=26.78 Aligned_cols=73 Identities=25% Similarity=0.344 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhhchhccchHHHHHHhhhhhhhhHH-HhHHHHHHh
Q 008287 29 EEIEAAKTLIRNVEKEDQARVESIARQTKSPDVPEELFMVLQEMQKNLVYFQSKEQKREALKLLDLENVH-ALFDEYIQR 107 (571)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 107 (571)
||-|--+.--..+..||+..|=.|.+. ++|.++.|=+|.--.-..=-.||-|.. .|||.++ +.||+|+|-
T Consensus 102 eEre~LkeFW~SL~eeERr~LVkIEKe--------~VLkkmKeqq~h~C~C~vCgr~~~~ie-~ele~ly~~~y~~l~~~ 172 (190)
T PF13945_consen 102 EEREKLKEFWESLSEEERRSLVKIEKE--------AVLKKMKEQQKHSCSCSVCGRKRTAIE-EELERLYDAYYEELEQY 172 (190)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhhHH--------HHHHHHHHHhccCcccHHHhchhhHHH-HHHHHHHHHHHHHHHHH
Confidence 555555555556666666666666654 666666664433221111123444444 5888887 578999988
Q ss_pred hhc
Q 008287 108 ASQ 110 (571)
Q Consensus 108 ~s~ 110 (571)
|-.
T Consensus 173 ~~~ 175 (190)
T PF13945_consen 173 ANH 175 (190)
T ss_pred HHh
Confidence 875
No 120
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=28.39 E-value=43 Score=32.44 Aligned_cols=42 Identities=26% Similarity=0.502 Sum_probs=29.5
Q ss_pred hhchhccchHHH---HHHhhhhhhhhHHHhHHHHHHhhhccccCC
Q 008287 74 KNLVYFQSKEQK---REALKLLDLENVHALFDEYIQRASQCLASS 115 (571)
Q Consensus 74 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~ss~ 115 (571)
|-+-+=..|||+ |.|-|||.++.-|++|+++-.---.|.++.
T Consensus 9 RDiYYRlAKe~gwRARSAFKLlqideef~i~~gv~rvVDLCAAPG 53 (294)
T KOG1099|consen 9 RDIYYRLAKENGWRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPG 53 (294)
T ss_pred hHHHHHHHHhccchHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCC
Confidence 334444567765 889999999999999999444444555543
No 121
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=25.92 E-value=6.2e+02 Score=27.04 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhhch-hccchHHHH
Q 008287 30 EIEAAKTLIRNVEKEDQARVESIARQTKSPDVPEELFMVLQEMQKNLV-YFQSKEQKR 86 (571)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 86 (571)
+|..+.-.++.+=.-.++-|-..++-+++ =.+|+-+.|.-....+. .++-+|.+|
T Consensus 74 dv~~~~~~v~~~F~s~R~~L~~A~q~qKP--ds~elad~LkPI~e~i~eI~~fkE~nR 129 (480)
T KOG2675|consen 74 DVADVAEMVKSAFASQRAFLWVASQKQKP--DSNELADLLKPINEEIGEINNFKEKNR 129 (480)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCC--ChHHHHHHhhhHHHhhhHHhhhhhccc
Confidence 45555555555555555555544433322 23455555555555544 334455555
No 122
>PRK13770 histidinol dehydrogenase; Provisional
Probab=25.34 E-value=1.2e+02 Score=32.14 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.7
Q ss_pred CChhHHHHHHHHHHhhchhccchHH
Q 008287 60 DVPEELFMVLQEMQKNLVYFQSKEQ 84 (571)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (571)
.||+|+...|+++.+|+-.||.+|.
T Consensus 68 ~v~~~~~~ai~~A~~nI~~fh~~q~ 92 (416)
T PRK13770 68 TLDEKTKQALQQSYERIKAYQESIK 92 (416)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 4788999999999999999996643
No 123
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=25.33 E-value=4.6e+02 Score=24.11 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhcCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhhchhccchHHHHH
Q 008287 9 DEAVEEIMRIHKSLPERPGIEEIEAAKTLIRNVEKEDQARVESIARQTKSPDVPEELFMVLQEMQKNLVYFQSKEQKRE 87 (571)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (571)
-+-|.+||+-+|.=-+++..+|.+|=..|| .+|+=|+++..+.++.-....| |.--.--++|..+...=..|||..
T Consensus 56 RqQmRdLm~~~r~~~~~~~~~er~amh~LI-~ad~FDEaavra~a~kma~~~~--e~~Vem~k~~nqmy~lLTPEQKaq 131 (166)
T PRK10363 56 RQQMRDLMQQARHEQPPVNVSEMETMHRLV-TAENFDENAVRAQAEKMAQEQV--ARQVEMAKVRNQMYRLLTPEQQAV 131 (166)
T ss_pred HHHHHHHHHHHHhcccccCHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCHHHHHH
Confidence 356789999999766778889999988888 5666666666665532211111 222233455666666667888864
No 124
>PRK10455 periplasmic protein; Reviewed
Probab=24.76 E-value=1.7e+02 Score=26.83 Aligned_cols=77 Identities=21% Similarity=0.354 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhcCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhhchhccchHHHHHH
Q 008287 9 DEAVEEIMRIHKSLPERPGIEEIEAAKTLIRNVEKEDQARVESIARQTKSPDVPEELFMVLQEMQKNLVYFQSKEQKREA 88 (571)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (571)
..-|.+||+-+|.=-.||..+|-++-..+|.+ |.=+++++.+++...... -.+..-.-.+++..+...=+-|||...
T Consensus 62 rqqir~im~~~r~~~~~~~~~~r~~l~~li~a-d~FDeaavra~~~k~~~~--~~~~~~~~~~~~~qiy~vLTPEQr~q~ 138 (161)
T PRK10455 62 KQQIRDIMKAQRDQMKRPPLEERRAMHDIIAS-DTFDKAKAEAQITKMEAQ--RKARMLAHMETQNKIYNVLTPEQKKQF 138 (161)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHcc-CccCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35678899988764468999999988888644 555555554433210000 112222334444445555566777643
No 125
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=24.69 E-value=1.1e+02 Score=21.57 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhchhccchHHHHHHhhh
Q 008287 64 ELFMVLQEMQKNLVYFQSKEQKREALKL 91 (571)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (571)
|+-.+|+|||.-+ ++|++|...|
T Consensus 12 ~l~~~l~elk~~l-----~~Q~kE~~~L 34 (45)
T PF11598_consen 12 ELNQMLQELKELL-----RQQIKETRFL 34 (45)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 7778888888765 6799998776
No 126
>PF15151 RGCC: Response gene to complement 32 protein family
Probab=23.08 E-value=1.6e+02 Score=24.94 Aligned_cols=50 Identities=28% Similarity=0.262 Sum_probs=34.3
Q ss_pred ChhHHHHHHHHHHhhchhccchHHHHHHhhhhhhhhHHHhHHHHHHhhhccccCCCC
Q 008287 61 VPEELFMVLQEMQKNLVYFQSKEQKREALKLLDLENVHALFDEYIQRASQCLASSSA 117 (571)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ss~~~ 117 (571)
.-+||=+||||...-+--|.+--|||--.|=.-|+.|- .|++..++-.+|
T Consensus 17 ~~~eL~d~L~EFd~Vvedf~sP~~~r~f~Y~ehL~~mK-------Rrs~~svsD~SG 66 (121)
T PF15151_consen 17 DDDELSDLLCEFDAVVEDFSSPAEKRHFRYDEHLEEMK-------RRSSASVSDSSG 66 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhccchHHHHHHHHH-------HhcCCccccccC
Confidence 34589999999999888999888887665554455443 355555554333
No 127
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=23.07 E-value=1.6e+02 Score=29.30 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=36.4
Q ss_pred CCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhhchhcc
Q 008287 22 LPERPGIEEIEAAKTLIRNVEKEDQARVESIARQTKSPDVPEELFMVLQEMQKNLVYFQ 80 (571)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (571)
+-+|--.+.-||-+.+.++ .. |+.|..+||++ +|.-.-.||||-.+|.=+
T Consensus 225 IGA~Lq~dQAeADk~iAqA-kA-EeRRA~AvA~E-------QEm~A~vqe~rAkvVeAe 274 (316)
T PF12127_consen 225 IGAKLQTDQAEADKRIAQA-KA-EERRAMAVARE-------QEMKAKVQEMRAKVVEAE 274 (316)
T ss_pred hchhhhHHHHHHHHHHHHH-HH-HHHHHHHHHHH-------HHHHHHHHHHHhHheehh
Confidence 4456677888888877554 34 44588889975 388889999998888543
No 128
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=22.65 E-value=1e+02 Score=23.99 Aligned_cols=30 Identities=10% Similarity=0.285 Sum_probs=15.8
Q ss_pred CCCChhHHHHHHHHHHhhhhHHHHHHHHHH
Q 008287 24 ERPGIEEIEAAKTLIRNVEKEDQARVESIA 53 (571)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (571)
.+|+..--||=++.+..+-.-.+.-||++.
T Consensus 35 T~PS~~n~~AFe~AV~~iaA~areLLDaLe 64 (88)
T COG5552 35 THPSAANAEAFEAAVAEIAATARELLDALE 64 (88)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 556555555555555555455555555544
No 129
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=21.67 E-value=1.7e+02 Score=31.17 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.4
Q ss_pred CChhHHHHHHHHHHhhchhccchHHH
Q 008287 60 DVPEELFMVLQEMQKNLVYFQSKEQK 85 (571)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (571)
.||+|+...|+++.+|+-.||.+|..
T Consensus 69 ~v~~~~~~ai~~A~~nI~~fh~~q~~ 94 (426)
T PRK12447 69 KVPEQVKEDIRFAQDQVRRFAEAQRD 94 (426)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57889999999999999999966543
No 130
>PF05549 Allexi_40kDa: Allexivirus 40kDa protein; InterPro: IPR008398 This family of sequences contains the 40 kDa polypeptides from garlic viruses (Allexiviruses), which do not resemble any other plant virus gene products reported so far []. Rod-shaped flexuous viruses have been isolated from garlic plants, Allium sativum. Infection by this virus creates typical mosaic symptoms. The core-like sequence of a zinc finger protein preceded by a cluster of basic amino acid residues shows similarities to the corresponding 12K proteins of the potexviruses and carlaviruses []. Viral epidemics by allexiviruses are also known to be caused by aphids and eriophyid mites (Aceria tulipae) carrying Potyviruses, Carlaviruses, and Allexiviruses [].
Probab=21.43 E-value=3.4e+02 Score=26.69 Aligned_cols=50 Identities=24% Similarity=0.166 Sum_probs=30.9
Q ss_pred CChhHHHHHHHHHHhhch-hccchHHHHHHhhhhhhhhHHHhHHHHHHhhh
Q 008287 60 DVPEELFMVLQEMQKNLV-YFQSKEQKREALKLLDLENVHALFDEYIQRAS 109 (571)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 109 (571)
.+++++..++|..+++.- -+.++-.|+=|.-=-.|+.+|.-||++++-.+
T Consensus 92 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~iet~L~~lh~kld~l~~~~~ 142 (271)
T PF05549_consen 92 RLLDSIHSVEQKSELSANTPSSSKLLKKLASIETSLESLHIKLDELISSLT 142 (271)
T ss_pred hhHHHHHHHHHHHhcccCCccchhHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 566777777777766653 23333223222222357788999999998766
No 131
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=21.11 E-value=1.7e+02 Score=31.35 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.4
Q ss_pred CChhHHHHHHHHHHhhchhccchHHH
Q 008287 60 DVPEELFMVLQEMQKNLVYFQSKEQK 85 (571)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (571)
.||+|+...|+++.+|+-.||.+|..
T Consensus 76 ~v~~~~~~ai~~A~~~I~~Fh~~q~~ 101 (425)
T PRK00877 76 RLDPELREALEEAAENIRAFHEAQKP 101 (425)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 58889999999999999999966543
No 132
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=20.73 E-value=1.8e+02 Score=30.72 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=23.5
Q ss_pred CCChhHHHHHHHHHHhhchhccchHHHH
Q 008287 59 PDVPEELFMVLQEMQKNLVYFQSKEQKR 86 (571)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (571)
..||+|+...|+++.+|+-.||.+|..+
T Consensus 47 ~~~~~~~~~ai~~A~~nI~~fh~~q~~~ 74 (390)
T cd06572 47 AAVDPELKEAIELAAENIRAFHEAQLPK 74 (390)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3578899999999999999999776554
No 133
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=20.35 E-value=4.4e+02 Score=21.47 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=32.8
Q ss_pred CCChhHHHHHHHHHHhh---hhHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhhchhccchHHHHH
Q 008287 25 RPGIEEIEAAKTLIRNV---EKEDQARVESIARQTKSPDVPEELFMVLQEMQKNLVYFQSKEQKRE 87 (571)
Q Consensus 25 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (571)
|-+.+|+++.+.+++.. +.+++.++-+.+++...... ++....++.+... ..+||..
T Consensus 15 ~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~r~~ 74 (104)
T cd07313 15 EYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAP--DLYEFTSLIKEHF----DYEERLE 74 (104)
T ss_pred CCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHhC----CHHHHHH
Confidence 44667788877776654 55666666666654433332 4666666655433 4555543
Done!