Query 008287
Match_columns 571
No_of_seqs 521 out of 4569
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 22:38:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v47_A TOLL-like receptor 5B a 100.0 3.2E-30 1.1E-34 276.5 23.8 317 183-517 11-414 (455)
2 2id5_A Lingo-1, leucine rich r 100.0 7.2E-30 2.5E-34 275.8 25.6 319 183-517 12-339 (477)
3 4eco_A Uncharacterized protein 100.0 2.5E-30 8.6E-35 289.4 21.6 280 236-518 202-533 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 1E-29 3.5E-34 291.2 24.1 280 236-518 444-773 (876)
5 4fmz_A Internalin; leucine ric 100.0 1.1E-28 3.9E-33 255.0 28.7 266 236-515 62-328 (347)
6 4fmz_A Internalin; leucine ric 100.0 1.5E-28 5.1E-33 254.1 29.4 263 236-511 84-346 (347)
7 2z7x_B TOLL-like receptor 1, v 100.0 1E-28 3.6E-33 269.5 27.5 157 356-516 322-486 (520)
8 3o6n_A APL1; leucine-rich repe 100.0 2.2E-29 7.6E-34 264.9 20.9 267 237-514 66-355 (390)
9 3vq2_A TLR4, TOLL-like recepto 100.0 7.1E-29 2.4E-33 275.8 25.7 140 376-516 419-563 (606)
10 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-28 7.9E-33 269.6 28.8 271 236-516 72-515 (562)
11 4eco_A Uncharacterized protein 100.0 1.8E-29 6.3E-34 282.4 19.1 268 240-513 305-602 (636)
12 2z63_A TOLL-like receptor 4, v 100.0 1.2E-28 4.2E-33 271.5 25.1 137 379-517 394-537 (570)
13 4ecn_A Leucine-rich repeat pro 100.0 1.1E-28 3.7E-33 282.7 25.3 269 238-512 546-841 (876)
14 2ft3_A Biglycan; proteoglycan, 100.0 3.9E-28 1.3E-32 249.8 24.6 261 240-509 54-331 (332)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-28 9.1E-33 267.8 24.9 276 236-516 70-515 (549)
16 1xku_A Decorin; proteoglycan, 100.0 1.1E-27 3.9E-32 246.0 27.6 262 240-509 52-330 (330)
17 3oja_B Anopheles plasmodium-re 100.0 2.3E-28 7.9E-33 271.6 23.7 266 238-514 73-361 (597)
18 3o6n_A APL1; leucine-rich repe 100.0 2.9E-28 1E-32 256.3 23.2 267 239-514 44-334 (390)
19 3t6q_A CD180 antigen; protein- 100.0 4E-28 1.4E-32 269.7 25.3 312 184-512 14-414 (606)
20 3v47_A TOLL-like receptor 5B a 100.0 3.4E-28 1.1E-32 260.7 22.6 275 240-518 30-391 (455)
21 1ogq_A PGIP-2, polygalacturona 100.0 2.6E-29 8.9E-34 256.7 12.8 246 241-512 51-305 (313)
22 4g8a_A TOLL-like receptor 4; l 100.0 2.9E-27 1E-31 263.1 30.3 326 174-516 23-585 (635)
23 2id5_A Lingo-1, leucine rich r 100.0 7.8E-28 2.7E-32 259.8 24.7 276 239-518 31-316 (477)
24 1o6v_A Internalin A; bacterial 100.0 2.5E-27 8.5E-32 255.3 28.1 264 236-514 86-369 (466)
25 1xku_A Decorin; proteoglycan, 100.0 2.8E-27 9.7E-32 243.1 26.9 261 241-512 32-307 (330)
26 3rgz_A Protein brassinosteroid 100.0 5.3E-28 1.8E-32 276.4 22.1 248 265-513 393-719 (768)
27 2z80_A TOLL-like receptor 2, v 100.0 4.5E-28 1.6E-32 251.5 18.6 281 243-537 34-331 (353)
28 1o6v_A Internalin A; bacterial 100.0 8.9E-27 3E-31 251.0 29.0 266 236-516 108-393 (466)
29 3t6q_A CD180 antigen; protein- 100.0 2.9E-27 9.9E-32 262.8 25.6 277 236-517 274-566 (606)
30 2ft3_A Biglycan; proteoglycan, 100.0 3.6E-27 1.2E-31 242.6 24.0 259 241-511 34-307 (332)
31 3oja_B Anopheles plasmodium-re 100.0 1.9E-27 6.3E-32 264.3 23.3 267 239-514 50-340 (597)
32 3rgz_A Protein brassinosteroid 100.0 1.1E-27 3.7E-32 273.8 21.1 280 236-518 314-701 (768)
33 2z7x_B TOLL-like receptor 1, v 100.0 4.7E-27 1.6E-31 256.3 25.2 272 236-516 41-462 (520)
34 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-27 7.4E-32 263.8 21.9 89 236-326 76-167 (606)
35 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-26 5.1E-31 255.1 27.2 268 240-516 52-491 (562)
36 4fcg_A Uncharacterized protein 99.9 5.6E-27 1.9E-31 241.1 20.6 231 240-511 81-314 (328)
37 2z66_A Variable lymphocyte rec 99.9 3.3E-27 1.1E-31 239.9 18.4 243 270-516 11-266 (306)
38 2z63_A TOLL-like receptor 4, v 99.9 7.2E-27 2.5E-31 257.4 21.7 319 184-517 9-513 (570)
39 4fcg_A Uncharacterized protein 99.9 6.4E-27 2.2E-31 240.6 19.8 219 265-521 80-301 (328)
40 3bz5_A Internalin-J, INLJ; leu 99.9 4.2E-26 1.4E-30 245.1 26.7 255 237-513 61-354 (457)
41 3zyj_A Leucine-rich repeat-con 99.9 3.4E-26 1.2E-30 244.6 23.9 244 243-516 46-297 (440)
42 3g06_A SSPH2 (leucine-rich rep 99.9 6.8E-26 2.3E-30 251.3 26.9 239 240-513 61-299 (622)
43 2z81_A CD282 antigen, TOLL-lik 99.9 7.3E-27 2.5E-31 256.4 19.0 275 236-514 46-426 (549)
44 3zyi_A Leucine-rich repeat-con 99.9 5.3E-26 1.8E-30 244.0 22.8 227 266-517 75-309 (452)
45 3bz5_A Internalin-J, INLJ; leu 99.9 2.6E-25 9E-30 238.9 27.1 254 238-513 40-333 (457)
46 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-25 4.4E-30 253.0 25.5 275 238-516 327-627 (680)
47 3j0a_A TOLL-like receptor 5; m 99.9 2.2E-25 7.6E-30 257.3 27.4 311 185-512 7-376 (844)
48 1ziw_A TOLL-like receptor 3; i 99.9 4.2E-25 1.4E-29 248.9 26.6 312 184-510 6-365 (680)
49 2z66_A Variable lymphocyte rec 99.9 5E-26 1.7E-30 231.1 15.0 265 243-513 10-289 (306)
50 1jl5_A Outer protein YOPM; leu 99.9 1.7E-24 5.8E-29 232.4 26.6 241 240-512 131-371 (454)
51 1jl5_A Outer protein YOPM; leu 99.9 1E-24 3.6E-29 234.0 23.8 247 235-512 148-410 (454)
52 1wwl_A Monocyte differentiatio 99.9 7.1E-27 2.4E-31 238.4 5.8 240 266-513 43-311 (312)
53 3j0a_A TOLL-like receptor 5; m 99.9 6.8E-25 2.3E-29 253.2 22.2 276 238-516 22-356 (844)
54 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-25 4.5E-30 229.6 14.4 218 286-513 31-252 (317)
55 3oja_A Leucine-rich immune mol 99.9 6.9E-26 2.4E-30 245.4 12.8 240 266-515 34-286 (487)
56 1ozn_A Reticulon 4 receptor; N 99.9 1.6E-24 5.5E-29 217.8 21.5 222 269-516 14-243 (285)
57 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-26 7.7E-31 235.3 7.4 237 261-507 29-271 (317)
58 2z80_A TOLL-like receptor 2, v 99.9 4.5E-25 1.6E-29 228.8 16.4 248 240-491 52-317 (353)
59 1ogq_A PGIP-2, polygalacturona 99.9 5E-25 1.7E-29 224.9 14.6 221 266-512 50-282 (313)
60 1p9a_G Platelet glycoprotein I 99.9 1.2E-23 3.9E-28 212.5 21.8 202 287-515 8-212 (290)
61 1ozn_A Reticulon 4 receptor; N 99.9 3.7E-24 1.3E-28 215.2 17.3 213 243-460 14-235 (285)
62 1wwl_A Monocyte differentiatio 99.9 1.3E-25 4.4E-30 229.1 6.1 240 239-489 42-310 (312)
63 3oja_A Leucine-rich immune mol 99.9 2.9E-24 9.8E-29 232.7 16.3 217 287-513 32-252 (487)
64 2z62_A TOLL-like receptor 4, v 99.9 1.9E-23 6.4E-28 209.0 20.5 221 270-517 11-243 (276)
65 3g06_A SSPH2 (leucine-rich rep 99.9 4.8E-23 1.6E-27 228.5 25.7 242 241-519 41-282 (622)
66 3zyi_A Leucine-rich repeat-con 99.9 2.8E-23 9.5E-28 222.8 22.4 219 239-460 74-300 (452)
67 3zyj_A Leucine-rich repeat-con 99.9 3.5E-23 1.2E-27 221.2 22.7 219 239-460 63-289 (440)
68 4g8a_A TOLL-like receptor 4; l 99.9 1E-22 3.6E-27 226.3 22.7 130 240-371 52-186 (635)
69 2o6q_A Variable lymphocyte rec 99.9 2E-22 6.9E-27 201.0 22.2 201 268-516 18-223 (270)
70 1h6u_A Internalin H; cell adhe 99.9 1.4E-22 4.7E-27 206.4 19.4 197 263-492 38-234 (308)
71 1h6u_A Internalin H; cell adhe 99.9 1.5E-22 5.2E-27 206.0 19.1 210 273-516 26-235 (308)
72 1z7x_W Ribonuclease inhibitor; 99.9 6.4E-24 2.2E-28 227.7 6.3 272 241-512 86-412 (461)
73 2ca6_A RAN GTPase-activating p 99.9 6.2E-24 2.1E-28 223.0 5.4 241 255-515 21-320 (386)
74 1p9a_G Platelet glycoprotein I 99.9 7E-22 2.4E-26 199.4 20.2 196 238-439 8-207 (290)
75 2z62_A TOLL-like receptor 4, v 99.9 4.8E-22 1.6E-26 198.7 18.4 202 257-460 21-234 (276)
76 1z7x_W Ribonuclease inhibitor; 99.9 2.3E-23 7.7E-28 223.4 5.7 274 237-511 53-383 (461)
77 2xwt_C Thyrotropin receptor; s 99.9 1.4E-21 4.9E-26 191.1 14.2 202 278-509 23-237 (239)
78 2o6q_A Variable lymphocyte rec 99.9 1.4E-20 4.8E-25 187.6 21.2 195 241-440 17-218 (270)
79 2xwt_C Thyrotropin receptor; s 99.9 3.2E-21 1.1E-25 188.6 15.7 192 266-460 31-236 (239)
80 3rfs_A Internalin B, repeat mo 99.9 2.5E-21 8.6E-26 193.3 14.8 205 262-499 37-247 (272)
81 4glp_A Monocyte differentiatio 99.8 2.8E-21 9.5E-26 196.7 12.3 220 266-513 64-309 (310)
82 3rfs_A Internalin B, repeat mo 99.8 3.1E-20 1.1E-24 185.4 19.3 199 291-516 21-223 (272)
83 2ast_B S-phase kinase-associat 99.8 4.5E-22 1.5E-26 204.3 5.3 192 241-437 48-257 (336)
84 4glp_A Monocyte differentiatio 99.8 5.8E-21 2E-25 194.3 12.8 217 241-461 65-305 (310)
85 3goz_A Leucine-rich repeat-con 99.8 1.7E-21 5.9E-26 202.7 8.4 247 246-513 4-299 (362)
86 2ca6_A RAN GTPase-activating p 99.8 6.9E-22 2.4E-26 207.4 4.9 253 236-508 28-340 (386)
87 3cvr_A Invasion plasmid antige 99.8 3.6E-20 1.2E-24 203.1 17.7 176 266-461 59-241 (571)
88 3cvr_A Invasion plasmid antige 99.8 8.5E-20 2.9E-24 200.2 19.3 186 290-497 60-253 (571)
89 3goz_A Leucine-rich repeat-con 99.8 3.8E-21 1.3E-25 200.1 8.1 235 238-489 20-298 (362)
90 3m19_A Variable lymphocyte rec 99.8 2.4E-19 8.1E-24 176.7 20.4 177 314-516 16-197 (251)
91 2ast_B S-phase kinase-associat 99.8 7.4E-21 2.5E-25 195.2 8.3 216 268-485 49-282 (336)
92 1h6t_A Internalin B; cell adhe 99.8 9.1E-20 3.1E-24 183.9 15.5 169 265-440 45-213 (291)
93 1h6t_A Internalin B; cell adhe 99.8 3E-19 1E-23 180.2 16.9 192 290-491 25-216 (291)
94 3ogk_B Coronatine-insensitive 99.8 1.2E-20 3.9E-25 208.8 5.4 275 239-513 191-528 (592)
95 4ay9_X Follicle-stimulating ho 99.8 6E-19 2.1E-23 182.6 17.9 234 243-485 12-256 (350)
96 3m19_A Variable lymphocyte rec 99.8 8.3E-19 2.9E-23 172.8 18.1 173 267-441 15-193 (251)
97 3ogk_B Coronatine-insensitive 99.8 2.4E-20 8E-25 206.3 5.8 274 238-511 162-501 (592)
98 4ay9_X Follicle-stimulating ho 99.8 1.8E-18 6.2E-23 179.0 18.2 230 270-506 13-254 (350)
99 1m9s_A Internalin B; cell inva 99.8 1.1E-18 3.7E-23 193.2 13.6 171 239-419 42-212 (605)
100 1m9s_A Internalin B; cell inva 99.8 1.3E-18 4.4E-23 192.6 13.7 194 289-492 21-214 (605)
101 1xeu_A Internalin C; cellular 99.8 4.4E-19 1.5E-23 176.2 8.8 164 270-441 23-186 (263)
102 1xeu_A Internalin C; cellular 99.8 1.1E-18 3.7E-23 173.4 10.4 172 288-492 18-189 (263)
103 3e6j_A Variable lymphocyte rec 99.8 3E-17 1E-21 159.5 18.7 152 362-517 23-178 (229)
104 2v9t_B SLIT homolog 2 protein 99.7 3E-17 1E-21 158.5 16.3 153 338-516 14-170 (220)
105 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.8E-22 157.8 12.8 149 263-415 41-192 (197)
106 2xot_A Amphoterin-induced prot 99.7 1.7E-17 5.7E-22 172.5 14.4 179 315-516 21-207 (361)
107 1dce_A Protein (RAB geranylger 99.7 1.8E-20 6E-25 206.2 -8.8 120 382-505 442-567 (567)
108 4ezg_A Putative uncharacterize 99.7 1.6E-17 5.4E-22 157.4 12.8 147 241-394 45-194 (197)
109 1dce_A Protein (RAB geranylger 99.7 5.7E-20 1.9E-24 202.2 -5.9 179 263-443 346-549 (567)
110 2o6s_A Variable lymphocyte rec 99.7 5.5E-17 1.9E-21 154.8 14.0 176 292-499 10-190 (208)
111 2v70_A SLIT-2, SLIT homolog 2 99.7 9.2E-17 3.1E-21 155.1 15.6 153 338-516 14-171 (220)
112 2o6s_A Variable lymphocyte rec 99.7 1.4E-16 4.9E-21 152.0 16.0 173 244-427 11-189 (208)
113 2p1m_B Transport inhibitor res 99.7 1E-18 3.4E-23 193.2 -1.3 130 380-510 371-518 (594)
114 2p1m_B Transport inhibitor res 99.7 1.8E-18 6.3E-23 191.1 0.6 267 239-507 129-441 (594)
115 2xot_A Amphoterin-induced prot 99.7 1.2E-16 4E-21 166.1 12.4 150 243-397 21-179 (361)
116 3e6j_A Variable lymphocyte rec 99.7 5.1E-16 1.8E-20 150.7 16.1 149 268-440 21-172 (229)
117 2v9t_B SLIT homolog 2 protein 99.7 5.7E-16 2E-20 149.5 14.1 148 269-440 14-165 (220)
118 2v70_A SLIT-2, SLIT homolog 2 99.7 6.8E-16 2.3E-20 148.9 14.3 78 270-349 15-95 (220)
119 2ell_A Acidic leucine-rich nuc 99.6 7.2E-16 2.5E-20 141.9 11.2 109 240-350 24-135 (168)
120 4b8c_D Glucose-repressible alc 99.6 9.3E-17 3.2E-21 181.8 6.2 153 266-418 173-330 (727)
121 4b8c_D Glucose-repressible alc 99.6 9.5E-17 3.2E-21 181.7 4.9 189 240-437 173-369 (727)
122 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.9E-20 140.5 10.9 131 265-396 23-162 (168)
123 2wfh_A SLIT homolog 2 protein 99.6 8.5E-15 2.9E-19 138.2 14.7 129 362-516 14-144 (193)
124 2je0_A Acidic leucine-rich nuc 99.6 4.7E-15 1.6E-19 133.5 8.9 108 241-350 18-128 (149)
125 1w8a_A SLIT protein; signaling 99.6 2.3E-14 8E-19 135.0 12.9 130 361-516 11-144 (192)
126 1a9n_A U2A', U2A'; complex (nu 99.5 5.6E-15 1.9E-19 137.1 7.9 86 265-351 18-104 (176)
127 2je0_A Acidic leucine-rich nuc 99.5 8.8E-15 3E-19 131.7 8.8 122 266-388 17-147 (149)
128 1a9n_A U2A', U2A'; complex (nu 99.5 2E-14 6.9E-19 133.4 10.3 132 377-511 15-153 (176)
129 3sb4_A Hypothetical leucine ri 99.5 2.2E-14 7.6E-19 146.9 8.5 100 402-505 224-328 (329)
130 2o6r_A Variable lymphocyte rec 99.5 3.2E-13 1.1E-17 125.2 15.6 131 361-517 10-143 (177)
131 2wfh_A SLIT homolog 2 protein 99.5 2E-13 6.8E-18 128.8 13.1 123 269-393 13-138 (193)
132 1w8a_A SLIT protein; signaling 99.5 1.7E-13 5.9E-18 129.0 12.4 124 315-440 11-139 (192)
133 4fdw_A Leucine rich hypothetic 99.4 3.7E-12 1.3E-16 133.9 20.6 255 240-509 113-381 (401)
134 1ds9_A Outer arm dynein; leuci 99.4 1.8E-15 6.1E-20 143.3 -4.4 88 260-349 42-129 (198)
135 2r9u_A Variable lymphocyte rec 99.4 1.1E-12 3.9E-17 121.5 14.0 109 384-518 15-125 (174)
136 3g39_A Variable lymphocyte rec 99.4 1.2E-12 4.1E-17 120.8 13.3 110 383-518 11-122 (170)
137 1ds9_A Outer arm dynein; leuci 99.4 2.7E-15 9.1E-20 142.1 -4.9 133 376-514 43-188 (198)
138 2o6r_A Variable lymphocyte rec 99.4 2.5E-12 8.5E-17 119.1 13.9 124 269-394 10-137 (177)
139 3sb4_A Hypothetical leucine ri 99.4 1.3E-12 4.3E-17 133.7 11.1 216 239-457 48-328 (329)
140 4fdw_A Leucine rich hypothetic 99.3 2.7E-11 9.1E-16 127.4 18.5 238 262-513 109-360 (401)
141 2r9u_A Variable lymphocyte rec 99.3 2.6E-11 8.9E-16 112.2 11.8 38 290-327 34-72 (174)
142 3g39_A Variable lymphocyte rec 99.2 4.5E-11 1.5E-15 110.1 11.5 59 290-348 31-91 (170)
143 3un9_A NLR family member X1; l 99.2 3.4E-12 1.2E-16 132.9 1.0 90 380-489 154-253 (372)
144 2ifg_A High affinity nerve gro 99.2 1.3E-10 4.3E-15 119.5 12.0 105 385-515 12-120 (347)
145 3un9_A NLR family member X1; l 99.1 1.2E-11 4.1E-16 128.8 2.7 160 335-513 72-254 (372)
146 2ifg_A High affinity nerve gro 99.0 1.1E-09 3.8E-14 112.4 10.1 102 244-349 12-117 (347)
147 4fs7_A Uncharacterized protein 99.0 1.1E-08 3.6E-13 107.2 16.4 193 307-508 157-376 (394)
148 4gt6_A Cell surface protein; l 98.9 6E-08 2E-12 101.4 21.5 258 242-509 66-368 (394)
149 4fs7_A Uncharacterized protein 98.9 2.1E-08 7.3E-13 104.8 17.1 261 236-512 67-356 (394)
150 4gt6_A Cell surface protein; l 98.8 1.1E-07 3.7E-12 99.5 19.1 267 236-511 83-391 (394)
151 2ra8_A Uncharacterized protein 98.8 3.9E-09 1.3E-13 109.1 4.6 61 380-440 251-320 (362)
152 2ra8_A Uncharacterized protein 98.6 3.1E-08 1E-12 102.4 7.4 158 238-418 137-321 (362)
153 1io0_A Tropomodulin; LRR prote 98.6 2.8E-08 9.4E-13 92.7 5.1 88 261-348 31-136 (185)
154 1io0_A Tropomodulin; LRR prote 98.5 3.7E-08 1.2E-12 91.8 4.2 111 283-393 30-163 (185)
155 4h09_A Hypothetical leucine ri 98.4 1.6E-05 5.4E-10 82.2 21.1 124 378-507 214-342 (379)
156 4h09_A Hypothetical leucine ri 98.4 2.2E-05 7.4E-10 81.2 20.7 109 376-490 235-347 (379)
157 3rw6_A Nuclear RNA export fact 97.9 1.6E-06 5.4E-11 85.3 0.8 78 286-364 167-257 (267)
158 3rw6_A Nuclear RNA export fact 97.8 1.8E-05 6.3E-10 77.7 5.2 79 263-342 167-258 (267)
159 3rfe_A Platelet glycoprotein I 97.7 0.0001 3.6E-09 64.1 7.7 42 475-516 31-73 (130)
160 1pgv_A TMD-1, tropomodulin TMD 97.6 5.7E-05 1.9E-09 70.4 5.1 84 261-344 36-135 (197)
161 3e4g_A ATP synthase subunit S, 97.6 7.3E-05 2.5E-09 68.4 5.6 81 405-509 62-150 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 7.4E-05 2.5E-09 69.6 5.6 110 238-347 39-169 (197)
163 3e4g_A ATP synthase subunit S, 97.5 0.00012 4E-09 67.0 6.4 78 267-345 62-149 (176)
164 3rfe_A Platelet glycoprotein I 95.9 0.011 3.6E-07 51.2 5.9 35 313-347 32-67 (130)
165 1k4u_P Phagocyte NADPH oxidase 68.2 2.2 7.6E-05 26.3 1.4 11 22-32 7-17 (32)
166 3a4m_A L-seryl-tRNA(SEC) kinas 61.4 30 0.001 32.7 9.0 90 7-107 159-251 (260)
167 1avo_B 11S regulator; proteaso 42.1 1.3E+02 0.0044 25.6 8.7 67 34-108 65-131 (140)
168 4abx_A DNA repair protein RECN 38.8 28 0.00096 31.0 4.3 42 47-88 129-171 (175)
169 1wmi_B RELB, hypothetical prot 38.4 44 0.0015 23.7 4.2 32 43-74 17-50 (67)
170 1xdk_B RAR-beta, retinoic acid 34.0 55 0.0019 31.8 5.9 48 23-74 185-234 (303)
171 2lz0_A Uncharacterized protein 32.0 55 0.0019 26.0 4.6 38 260-298 14-52 (100)
172 1m5i_A APC protein; coiled-coi 29.7 1.3E+02 0.0046 24.6 6.3 78 28-113 9-94 (125)
173 2kuq_A Fibroblast growth facto 28.4 55 0.0019 28.3 4.1 23 94-116 94-116 (153)
174 4e9m_A Nucleotide-binding olig 28.4 24 0.00081 30.2 1.8 39 40-80 67-107 (144)
175 1x91_A Invertase/pectin methyl 26.8 1.2E+02 0.004 25.6 6.3 61 2-69 73-133 (153)
176 2wh6_B BCL-2-like protein 11; 25.2 49 0.0017 19.0 2.1 15 60-75 1-15 (26)
177 3ax2_A Mitochondrial import re 24.1 1E+02 0.0036 23.0 4.5 41 28-70 18-58 (73)
178 2i9c_A Hypothetical protein RP 22.8 43 0.0015 27.9 2.4 50 7-56 36-100 (123)
179 2lz0_A Uncharacterized protein 22.4 94 0.0032 24.6 4.3 45 277-322 7-53 (100)
180 3nr7_A DNA-binding protein H-N 21.4 1.1E+02 0.0038 23.7 4.3 32 39-70 51-83 (86)
181 1xg2_B Pectinesterase inhibito 20.4 1E+02 0.0035 26.0 4.6 61 2-69 73-133 (153)
No 1
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=3.2e-30 Score=276.52 Aligned_cols=317 Identities=23% Similarity=0.327 Sum_probs=237.0
Q ss_pred hhcccccccCCccccccccccCcccccccccccccCCCCCccchHHhhhhhccccCCCCCcEEEecCCCCCC-ccccccc
Q 008287 183 KKAKSSFYSDGMGVVGTVVSSTPQIHDSTLKSGAVSGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDN-IEWLPDS 261 (571)
Q Consensus 183 ~~~~~~~~~~g~~~i~~~~~~~~~i~d~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~L~L~~~~~~~-~~~l~~~ 261 (571)
....+.|...++..++. .. ..+..+.+....+ ..+. ...+..+++|+.|++++|.+.. +. +..
T Consensus 11 ~~~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i-----~~~~------~~~~~~l~~L~~L~L~~n~~~~~i~--~~~ 74 (455)
T 3v47_A 11 IGYNAICINRGLHQVPE-LP--AHVNYVDLSLNSI-----AELN------ETSFSRLQDLQFLKVEQQTPGLVIR--NNT 74 (455)
T ss_dssp ETTEEECCSSCCSSCCC-CC--TTCCEEECCSSCC-----CEEC------TTTTSSCTTCCEEECCCCSTTCEEC--TTT
T ss_pred EccccCcCCCCcccCCC-CC--CccCEEEecCCcc-----CcCC------hhHhccCccccEEECcCCcccceEC--ccc
Confidence 34457788877777765 22 2222232222211 1111 1234567788999999886642 22 456
Q ss_pred cCCCCCCCEEEeeCCCCCcc-cchhcCCCCccEEEcccCCCCC-cchh--hcCCCCccEEEccCCCCCCC-chh-hcCCC
Q 008287 262 IGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIE-LPDS--IGDLLSLVYLDLRGNQISAL-PVA-LSRLV 335 (571)
Q Consensus 262 ~~~l~~L~~L~Ls~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~-lp~~--l~~l~~L~~L~Ls~n~i~~l-p~~-l~~l~ 335 (571)
|..+++|++|+|++|.+..+ |..|.++++|++|+|++|.++. ++.. +..+++|++|++++|.+..+ |.. +.+++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 78888999999999988876 6678888899999999988875 3343 78888999999999988876 433 78888
Q ss_pred CCCEEEccCCCCCCCc-hhhcC----------------------------------CcCCcEEeccCCCCCC-CccccC-
Q 008287 336 RLEELDLGSNNLSSLP-DSIGS----------------------------------LISLKKLIVETNDLEE-LPHTIG- 378 (571)
Q Consensus 336 ~L~~L~Ls~n~l~~lp-~~l~~----------------------------------l~~L~~L~L~~n~l~~-l~~~l~- 378 (571)
+|++|++++|.+..++ ..+.. +++|+.|++++|.+.. .+..+.
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 8999999888877543 23332 3567777777776642 111110
Q ss_pred --------------------------------------CCCCCcEEEccCCCCCCC-ccccccCCccceeecccccCCcC
Q 008287 379 --------------------------------------QCSSLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNNIKQL 419 (571)
Q Consensus 379 --------------------------------------~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~l 419 (571)
..++|+.|++++|.+..+ +..+..+++|++|++++|.+.++
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 125788888888888754 66788999999999999999986
Q ss_pred -ccccCCCCCccEEEecCCCCCCC-chhhhcCCCCcEEEccCCccCCCcc-chhccCCCCccEEecccCCCCccch-hhc
Q 008287 420 -PTTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRAL-PRSIGNLEMLEELDISNNQIRVLPD-SFR 495 (571)
Q Consensus 420 -p~~l~~l~~L~~L~Ls~n~l~~i-~~~l~~~~~L~~L~L~~n~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~ 495 (571)
+..+..+++|++|+|++|.++.+ +..+..+++|+.|++++|. +..+ |..+..+++|+.|+|++|+|+.+|. .+.
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 392 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH--IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc--ccccChhhccccccccEEECCCCccccCCHhHhc
Confidence 56889999999999999999977 5677889999999999994 4444 7789999999999999999999876 578
Q ss_pred CCCCCcEEEcccCCCCCCChHH
Q 008287 496 MLSRLRVLRVQENPLEVPPRNI 517 (571)
Q Consensus 496 ~l~~L~~L~L~~N~l~~~~~~~ 517 (571)
.+++|+.|+|++|+++|.|+.+
T Consensus 393 ~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 393 RLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TCTTCCEEECCSSCBCCCTTTT
T ss_pred cCCcccEEEccCCCcccCCCcc
Confidence 9999999999999999998753
No 2
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=7.2e-30 Score=275.75 Aligned_cols=319 Identities=23% Similarity=0.312 Sum_probs=260.5
Q ss_pred hhcccccccCCccccccccccCcccccccccccccCCCCCccchHHhhhhhccccCCCCCcEEEecCCCCCCcccccccc
Q 008287 183 KKAKSSFYSDGMGVVGTVVSSTPQIHDSTLKSGAVSGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSI 262 (571)
Q Consensus 183 ~~~~~~~~~~g~~~i~~~~~~~~~i~d~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~L~L~~~~~~~~~~l~~~~ 262 (571)
.+..+.|...++..++..+... +..+. +.+.....+. ...+..+++|+.|+|++|.+..+. |..|
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~--l~~L~-----L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~i~~~~--~~~~ 76 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTE--TRLLD-----LGKNRIKTLN------QDEFASFPHLEELELNENIVSAVE--PGAF 76 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTT--CSEEE-----CCSSCCCEEC------TTTTTTCTTCCEEECTTSCCCEEC--TTTT
T ss_pred CCCEEEeCCCCcCcCCCCCCCC--CcEEE-----CCCCccceEC------HhHccCCCCCCEEECCCCccCEeC--hhhh
Confidence 3456788888777776544322 22222 2222111111 123557789999999999887654 7789
Q ss_pred CCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCc-chhhcCCCCccEEEccCCCCCCCc-hhhcCCCCCCE
Q 008287 263 GKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLDLRGNQISALP-VALSRLVRLEE 339 (571)
Q Consensus 263 ~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~i~~lp-~~l~~l~~L~~ 339 (571)
..+++|++|+|++|.+..+|. .|.++++|++|+|++|.+..+ +..+..+++|++|++++|.+..++ ..+..+++|++
T Consensus 77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156 (477)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence 999999999999999998875 578999999999999999966 567899999999999999999764 47889999999
Q ss_pred EEccCCCCCCCch-hhcCCcCCcEEeccCCCCCCCcc-ccCCCCCCcEEEccCCCCC-CCccccccCCccceeecccccC
Q 008287 340 LDLGSNNLSSLPD-SIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRLK-ALPEAVGKIHTLEVLSVRYNNI 416 (571)
Q Consensus 340 L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~L~~n~i 416 (571)
|++++|.++.++. .+..+++|+.|++.+|.+..++. .+..+++|+.|++++|... .++.......+|+.|++++|.+
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 236 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc
Confidence 9999999998875 48899999999999999987654 7889999999999998754 5666555667999999999999
Q ss_pred CcCc-cccCCCCCccEEEecCCCCCCCch-hhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccch-h
Q 008287 417 KQLP-TTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-S 493 (571)
Q Consensus 417 ~~lp-~~l~~l~~L~~L~Ls~n~l~~i~~-~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~ 493 (571)
..+| ..+..+++|++|+|++|.++.++. .+..+++|+.|++++|... ...|..+..+++|+.|+|++|+|+.++. .
T Consensus 237 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 315 (477)
T 2id5_A 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315 (477)
T ss_dssp CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS-EECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccc-eECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence 9988 478999999999999999997764 5778999999999999432 2336788999999999999999999875 6
Q ss_pred hcCCCCCcEEEcccCCCCCCChHH
Q 008287 494 FRMLSRLRVLRVQENPLEVPPRNI 517 (571)
Q Consensus 494 l~~l~~L~~L~L~~N~l~~~~~~~ 517 (571)
|..+++|+.|+|++|+|.|+|...
T Consensus 316 ~~~l~~L~~L~l~~N~l~c~c~~~ 339 (477)
T 2id5_A 316 FHSVGNLETLILDSNPLACDCRLL 339 (477)
T ss_dssp BSCGGGCCEEECCSSCEECSGGGH
T ss_pred cCCCcccCEEEccCCCccCccchH
Confidence 789999999999999999998753
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2.5e-30 Score=289.45 Aligned_cols=280 Identities=21% Similarity=0.360 Sum_probs=217.9
Q ss_pred ccCCCCCcEEEecCCCCCCc----cc-----------cccccC--CCCCCCEEEeeCCCCC-cccchhcCCCCccEEEcc
Q 008287 236 VSSKKGTRDLNLQNKLMDNI----EW-----------LPDSIG--KLSSLVSLDLSENRIV-AVPATIGGLSSLKKLDLH 297 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~----~~-----------l~~~~~--~l~~L~~L~Ls~n~i~-~l~~~l~~l~~L~~L~L~ 297 (571)
+..+++|+.|+|++|.+.+. .| +|..+. .+++|++|+|++|.+. .+|..+.++++|++|+|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 55678999999999987651 11 688888 9999999999999876 578889999999999999
Q ss_pred cCC-CCC--cchhhcCC------CCccEEEccCCCCCCCch--hhcCCCCCCEEEccCCCCC-CCchhhcCCcCCcEEec
Q 008287 298 ANR-IIE--LPDSIGDL------LSLVYLDLRGNQISALPV--ALSRLVRLEELDLGSNNLS-SLPDSIGSLISLKKLIV 365 (571)
Q Consensus 298 ~n~-l~~--lp~~l~~l------~~L~~L~Ls~n~i~~lp~--~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 365 (571)
+|+ ++. +|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|.+. .+| .++.+++|+.|++
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 998 874 78888776 899999999999999998 8999999999999999998 888 7888889999999
Q ss_pred cCCCCCCCccccCCCCC-CcEEEccCCCCCCCccccccCC--ccceeecccccCCc-CccccC-------CCCCccEEEe
Q 008287 366 ETNDLEELPHTIGQCSS-LRELRVDYNRLKALPEAVGKIH--TLEVLSVRYNNIKQ-LPTTMS-------SLSSLRELDV 434 (571)
Q Consensus 366 ~~n~l~~l~~~l~~l~~-L~~L~Ls~n~l~~l~~~l~~l~--~L~~L~L~~n~i~~-lp~~l~-------~l~~L~~L~L 434 (571)
++|.+..+|..+..+++ |++|++++|.++.+|..+..+. +|++|++++|.+.+ +|..+. .+++|++|+|
T Consensus 361 ~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp CSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred CCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 99988888888888888 9999999998888887766544 78888888887776 455555 6667778888
Q ss_pred cCCCCCCCchhhh-cCCCCcEEEccCCccCCCccchhccC--------CCCccEEecccCCCCccchhhc--CCCCCcEE
Q 008287 435 SFNELESVPESLC-FATTLVKMNIGNNFADLRALPRSIGN--------LEMLEELDISNNQIRVLPDSFR--MLSRLRVL 503 (571)
Q Consensus 435 s~n~l~~i~~~l~-~~~~L~~L~L~~n~~~l~~lp~~l~~--------l~~L~~L~Ls~n~l~~lp~~l~--~l~~L~~L 503 (571)
++|.++.+|..+. .+++|+.|++++|. +..+|..+.. +++|+.|+|++|+|+.+|..+. .+++|+.|
T Consensus 441 s~N~l~~lp~~~~~~l~~L~~L~Ls~N~--l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L 518 (636)
T 4eco_A 441 SNNQISKFPKELFSTGSPLSSINLMGNM--LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI 518 (636)
T ss_dssp CSSCCCSCCTHHHHTTCCCSEEECCSSC--CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEE
T ss_pred cCCccCcCCHHHHccCCCCCEEECCCCC--CCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEE
Confidence 8877777776544 36777777777773 3355543322 2267777777777777776665 67777777
Q ss_pred EcccCCCCCCChHHH
Q 008287 504 RVQENPLEVPPRNIV 518 (571)
Q Consensus 504 ~L~~N~l~~~~~~~~ 518 (571)
+|++|+++..|..+.
T Consensus 519 ~Ls~N~l~~ip~~~~ 533 (636)
T 4eco_A 519 DLSYNSFSKFPTQPL 533 (636)
T ss_dssp ECCSSCCSSCCCGGG
T ss_pred ECCCCCCCCcChhhh
Confidence 777777766554443
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1e-29 Score=291.16 Aligned_cols=280 Identities=21% Similarity=0.348 Sum_probs=212.0
Q ss_pred ccCCCCCcEEEecCCCCCCcc---------------ccccccC--CCCCCCEEEeeCCCCC-cccchhcCCCCccEEEcc
Q 008287 236 VSSKKGTRDLNLQNKLMDNIE---------------WLPDSIG--KLSSLVSLDLSENRIV-AVPATIGGLSSLKKLDLH 297 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~~---------------~l~~~~~--~l~~L~~L~Ls~n~i~-~l~~~l~~l~~L~~L~L~ 297 (571)
+..+++|+.|+|++|.+.+.. .+|..+. .+++|++|+|++|.+. .+|..+.++++|++|+|+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 556788999999999776510 2677777 8999999999999865 578888999999999999
Q ss_pred cCC-CCC--cchhhcCCC-------CccEEEccCCCCCCCch--hhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEec
Q 008287 298 ANR-IIE--LPDSIGDLL-------SLVYLDLRGNQISALPV--ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV 365 (571)
Q Consensus 298 ~n~-l~~--lp~~l~~l~-------~L~~L~Ls~n~i~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 365 (571)
+|+ ++. +|..++.++ +|++|+|++|.++.+|. .++++++|+.|++++|.+..+| .++.+++|+.|++
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEEC
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEEC
Confidence 997 774 777665554 89999999999998888 8899999999999999988888 7888999999999
Q ss_pred cCCCCCCCccccCCCCC-CcEEEccCCCCCCCccccccCCc--cceeecccccCCcCccc----cC--CCCCccEEEecC
Q 008287 366 ETNDLEELPHTIGQCSS-LRELRVDYNRLKALPEAVGKIHT--LEVLSVRYNNIKQLPTT----MS--SLSSLRELDVSF 436 (571)
Q Consensus 366 ~~n~l~~l~~~l~~l~~-L~~L~Ls~n~l~~l~~~l~~l~~--L~~L~L~~n~i~~lp~~----l~--~l~~L~~L~Ls~ 436 (571)
++|.+..+|..+..+++ |+.|++++|+++.+|..+..+.. |+.|+|++|.+.+.++. +. .+++|++|+|++
T Consensus 603 s~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~ 682 (876)
T 4ecn_A 603 DYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682 (876)
T ss_dssp CSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred cCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence 99998888888888888 99999999998888877665543 77888888777653222 22 334677777777
Q ss_pred CCCCCCchhhh-cCCCCcEEEccCCccCCCccchhccC--------CCCccEEecccCCCCccchhhc--CCCCCcEEEc
Q 008287 437 NELESVPESLC-FATTLVKMNIGNNFADLRALPRSIGN--------LEMLEELDISNNQIRVLPDSFR--MLSRLRVLRV 505 (571)
Q Consensus 437 n~l~~i~~~l~-~~~~L~~L~L~~n~~~l~~lp~~l~~--------l~~L~~L~Ls~n~l~~lp~~l~--~l~~L~~L~L 505 (571)
|.++.+|..+. .+++|+.|+|++|. +..+|..+.. |++|+.|+|++|+|+.+|..+. .+++|+.|+|
T Consensus 683 N~L~~lp~~~~~~l~~L~~L~Ls~N~--L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~L 760 (876)
T 4ecn_A 683 NEIQKFPTELFATGSPISTIILSNNL--MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDV 760 (876)
T ss_dssp SCCCSCCHHHHHTTCCCSEEECCSCC--CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEEC
T ss_pred CcCCccCHHHHccCCCCCEEECCCCc--CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEe
Confidence 77777776554 56777777777773 3355554432 2267777777777777776665 6777777777
Q ss_pred ccCCCCCCChHHH
Q 008287 506 QENPLEVPPRNIV 518 (571)
Q Consensus 506 ~~N~l~~~~~~~~ 518 (571)
++|.++..|..+.
T Consensus 761 s~N~L~~lp~~l~ 773 (876)
T 4ecn_A 761 SYNCFSSFPTQPL 773 (876)
T ss_dssp CSSCCSSCCCGGG
T ss_pred CCCCCCccchhhh
Confidence 7777766554443
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.1e-28 Score=254.97 Aligned_cols=266 Identities=22% Similarity=0.347 Sum_probs=184.8
Q ss_pred ccCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCcc
Q 008287 236 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLV 315 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~ 315 (571)
+..+++|+.|++++|.+.++. . +..+++|++|++++|.+..++ .+.++++|++|++++|.+..++. +..+++|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~---~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~ 135 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDIS---P-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMY 135 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCC
T ss_pred hhhcCCccEEEccCCccccch---h-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCcee
Confidence 344667777777777666543 2 677777777777777777765 36777777777777777777655 67777777
Q ss_pred EEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCC
Q 008287 316 YLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKA 395 (571)
Q Consensus 316 ~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~ 395 (571)
+|++++|.....+..+..+++|++|++++|.+..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.+..
T Consensus 136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp EEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred EEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCC
Confidence 7777777444333457777777777777777776654 6677777777777777776655 6667777777777777776
Q ss_pred CccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCC
Q 008287 396 LPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLE 475 (571)
Q Consensus 396 l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~ 475 (571)
++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|+.|++++| .+..++ .+..++
T Consensus 214 ~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n--~l~~~~-~~~~l~ 287 (347)
T 4fmz_A 214 ITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSN--QISDIS-VLNNLS 287 (347)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS--CCCCCG-GGGGCT
T ss_pred Cch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCC--ccCCCh-hhcCCC
Confidence 654 6667777777777777777655 677777777777777777663 4666777777777777 334443 466677
Q ss_pred CccEEecccCCCCcc-chhhcCCCCCcEEEcccCCCCCCCh
Q 008287 476 MLEELDISNNQIRVL-PDSFRMLSRLRVLRVQENPLEVPPR 515 (571)
Q Consensus 476 ~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~~ 515 (571)
+|+.|+|++|+++.. +..+..+++|+.|+|++|+++..+.
T Consensus 288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 777777777777644 3566777777777777777766543
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.5e-28 Score=254.12 Aligned_cols=263 Identities=21% Similarity=0.347 Sum_probs=219.0
Q ss_pred ccCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCcc
Q 008287 236 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLV 315 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~ 315 (571)
+..+++|+.|++++|.+..+. .+..+++|++|++++|.+..++. +.++++|++|++++|.....+..+..+++|+
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~----~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~ 158 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDIS----ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLN 158 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG----GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCC
T ss_pred hhcCCcCCEEEccCCcccCch----HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCc
Confidence 567788999999998776642 57889999999999999888876 8889999999999986554445588899999
Q ss_pred EEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCC
Q 008287 316 YLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKA 395 (571)
Q Consensus 316 ~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~ 395 (571)
+|++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.|++++|.+..++. +..+++|++|++++|+++.
T Consensus 159 ~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~ 235 (347)
T 4fmz_A 159 YLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITD 235 (347)
T ss_dssp EEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred EEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCC
Confidence 99999999888765 7888999999999999888766 8888999999999998887765 7888999999999999988
Q ss_pred CccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCC
Q 008287 396 LPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLE 475 (571)
Q Consensus 396 l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~ 475 (571)
++. +..+++|++|++++|.+..+ ..+..+++|++|++++|.+++++ .+..+++|+.|++++|... ...|..++.++
T Consensus 236 ~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~ 311 (347)
T 4fmz_A 236 LSP-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLG-NEDMEVIGGLT 311 (347)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC-GGGHHHHHTCT
T ss_pred Ccc-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCC-CcChhHhhccc
Confidence 876 78889999999999988887 46788899999999999998874 5778899999999998532 34556788899
Q ss_pred CccEEecccCCCCccchhhcCCCCCcEEEcccCCCC
Q 008287 476 MLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLE 511 (571)
Q Consensus 476 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~ 511 (571)
+|+.|+|++|+++.++. +..+++|+.|++++|+++
T Consensus 312 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred cCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 99999999999998877 888999999999999875
No 7
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=269.48 Aligned_cols=157 Identities=24% Similarity=0.398 Sum_probs=107.2
Q ss_pred CCcCCcEEeccCCCCCC-CccccCCCCCCcEEEccCCCCCCC---ccccccCCccceeecccccCCc-Cccc-cCCCCCc
Q 008287 356 SLISLKKLIVETNDLEE-LPHTIGQCSSLRELRVDYNRLKAL---PEAVGKIHTLEVLSVRYNNIKQ-LPTT-MSSLSSL 429 (571)
Q Consensus 356 ~l~~L~~L~L~~n~l~~-l~~~l~~l~~L~~L~Ls~n~l~~l---~~~l~~l~~L~~L~L~~n~i~~-lp~~-l~~l~~L 429 (571)
.+++|++|++++|.+.. +|..+..+++|++|++++|+++.+ |..+..+++|++|++++|.+.+ +|.. +..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 44455555555555553 445555566666666666665532 2345556666666666666655 5442 5555666
Q ss_pred cEEEecCCCCCC-CchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccchh-hcCCCCCcEEEccc
Q 008287 430 RELDVSFNELES-VPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQE 507 (571)
Q Consensus 430 ~~L~Ls~n~l~~-i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~ 507 (571)
++|++++|.++. ++..+. ++|+.|++++| .+..+|..+..+++|+.|+|++|+|+.+|.. +..+++|+.|++++
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N--~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSN--KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSS--CCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCC--cccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence 666666666642 222221 67888888888 4558888888999999999999999999975 89999999999999
Q ss_pred CCCCCCChH
Q 008287 508 NPLEVPPRN 516 (571)
Q Consensus 508 N~l~~~~~~ 516 (571)
|++.|.|..
T Consensus 478 N~~~c~c~~ 486 (520)
T 2z7x_B 478 NPWDCSCPR 486 (520)
T ss_dssp SCBCCCHHH
T ss_pred CCCcccCCc
Confidence 999998864
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=2.2e-29 Score=264.88 Aligned_cols=267 Identities=20% Similarity=0.250 Sum_probs=210.9
Q ss_pred cCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCccc-chhcCCCCccEEEcccCCCCCcchh-hcCCCCc
Q 008287 237 SSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDS-IGDLLSL 314 (571)
Q Consensus 237 ~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L 314 (571)
..+++|+.|+|++|.+..+. +..+..+++|++|+|++|.+..++ ..+.++++|++|+|++|.++.+|.. +..+++|
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HHCCCCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccccCcEEECCCCcccccC--hhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 34567888888888776543 457788888888888888888774 4578888888888888888888765 4788888
Q ss_pred cEEEccCCCCCCCch-hhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCC-------------------CCCCCc
Q 008287 315 VYLDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETN-------------------DLEELP 374 (571)
Q Consensus 315 ~~L~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n-------------------~l~~l~ 374 (571)
++|++++|.+..++. .+..+++|++|++++|.++.++ +..+++|+.|++++| .+..++
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 221 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence 888888888887654 5778888888888888887654 344455555554444 444333
Q ss_pred cccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcC-ccccCCCCCccEEEecCCCCCCCchhhhcCCCCc
Q 008287 375 HTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPESLCFATTLV 453 (571)
Q Consensus 375 ~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~ 453 (571)
.. ..++|+.|++++|.++.+ ..+..+++|++|++++|.+.++ |..+..+++|++|+|++|.++.++..+..+++|+
T Consensus 222 ~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~ 298 (390)
T 3o6n_A 222 GP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK 298 (390)
T ss_dssp CC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCC
T ss_pred cc--ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCC
Confidence 22 246788888888888876 4678889999999999999885 6788899999999999999998888788889999
Q ss_pred EEEccCCccCCCccchhccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCCCC
Q 008287 454 KMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPP 514 (571)
Q Consensus 454 ~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 514 (571)
.|++++| .+..+|..+..+++|+.|+|++|+|+.++ +..+++|+.|++++|++.|.+
T Consensus 299 ~L~L~~n--~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 299 VLDLSHN--HLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp EEECCSS--CCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred EEECCCC--cceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccchh
Confidence 9999999 45678888888999999999999999886 678899999999999998754
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=7.1e-29 Score=275.79 Aligned_cols=140 Identities=19% Similarity=0.177 Sum_probs=110.4
Q ss_pred ccCCCCCCcEEEccCCCCCC-CccccccCCccceeecccccCCc--CccccCCCCCccEEEecCCCCCCC-chhhhcCCC
Q 008287 376 TIGQCSSLRELRVDYNRLKA-LPEAVGKIHTLEVLSVRYNNIKQ--LPTTMSSLSSLRELDVSFNELESV-PESLCFATT 451 (571)
Q Consensus 376 ~l~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~L~~n~i~~--lp~~l~~l~~L~~L~Ls~n~l~~i-~~~l~~~~~ 451 (571)
.+..+++|++|++++|.+.. .|..+..+++|++|++++|.+.+ +|..+..+++|++|+|++|.++.+ |..+..+++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 44555566666666666553 44556777788888888887776 577788889999999999988865 456788899
Q ss_pred CcEEEccCCccCCCccchhccCCCCccEEecccCCCCccchhhcCCC-CCcEEEcccCCCCCCChH
Q 008287 452 LVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLS-RLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 452 L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~-~L~~L~L~~N~l~~~~~~ 516 (571)
|+.|++++|... ...|..+..+++|+.|+|++|+|+.+|..+..++ +|+.|++++||+.|.|..
T Consensus 499 L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 499 LQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCEEECCSSCCS-CEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCEEECCCCcCC-CcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999998432 3347889999999999999999999998888887 599999999999998863
No 10
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2.3e-28 Score=269.59 Aligned_cols=271 Identities=24% Similarity=0.316 Sum_probs=188.7
Q ss_pred ccCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCc--chhhcCCCC
Q 008287 236 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIEL--PDSIGDLLS 313 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~ 313 (571)
+..+++|+.|+|++|.+.++. |..|..+++|++|+|++|.++.+|.. .+++|++|+|++|.++.+ |..++++++
T Consensus 72 ~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 72 ISFLSELRVLRLSHNRIRSLD--FHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTK 147 (562)
T ss_dssp TTTCTTCCEEECCSCCCCEEC--TTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred hccCCCccEEECCCCCCCcCC--HHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCc
Confidence 456778888888888776653 66788888888888888888888765 788888888888888765 367888888
Q ss_pred ccEEEccCCCCCCCchhhcCCCCC--CEEEccCCCC--------------------------------------------
Q 008287 314 LVYLDLRGNQISALPVALSRLVRL--EELDLGSNNL-------------------------------------------- 347 (571)
Q Consensus 314 L~~L~Ls~n~i~~lp~~l~~l~~L--~~L~Ls~n~l-------------------------------------------- 347 (571)
|++|++++|.+... .+..+++| ++|++++|.+
T Consensus 148 L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~ 225 (562)
T 3a79_B 148 LTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225 (562)
T ss_dssp CCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEE
T ss_pred ccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEE
Confidence 88888888877642 22222222 4444444433
Q ss_pred ---------------------------------------------------------------C-CCchhh---------
Q 008287 348 ---------------------------------------------------------------S-SLPDSI--------- 354 (571)
Q Consensus 348 ---------------------------------------------------------------~-~lp~~l--------- 354 (571)
. .+|..+
T Consensus 226 L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~ 305 (562)
T 3a79_B 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305 (562)
T ss_dssp EEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCC
T ss_pred ecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccch
Confidence 2 222221
Q ss_pred --------------------------------------------cCCcCCcEEeccCCCCCC-CccccCCCCCCcEEEcc
Q 008287 355 --------------------------------------------GSLISLKKLIVETNDLEE-LPHTIGQCSSLRELRVD 389 (571)
Q Consensus 355 --------------------------------------------~~l~~L~~L~L~~n~l~~-l~~~l~~l~~L~~L~Ls 389 (571)
..+++|++|++++|.+.. +|..+..+++|+.|+++
T Consensus 306 ~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 385 (562)
T 3a79_B 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385 (562)
T ss_dssp EEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECC
T ss_pred heehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECC
Confidence 344556666666666554 44555666666666666
Q ss_pred CCCCCCCc---cccccCCccceeecccccCCc-Ccc-ccCCCCCccEEEecCCCCCC-CchhhhcCCCCcEEEccCCccC
Q 008287 390 YNRLKALP---EAVGKIHTLEVLSVRYNNIKQ-LPT-TMSSLSSLRELDVSFNELES-VPESLCFATTLVKMNIGNNFAD 463 (571)
Q Consensus 390 ~n~l~~l~---~~l~~l~~L~~L~L~~n~i~~-lp~-~l~~l~~L~~L~Ls~n~l~~-i~~~l~~~~~L~~L~L~~n~~~ 463 (571)
+|+++.++ ..+..+++|++|++++|.+.+ +|. .+..+++|++|++++|.++. ++..+. ++|+.|++++| .
T Consensus 386 ~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N--~ 461 (562)
T 3a79_B 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN--R 461 (562)
T ss_dssp SSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS--C
T ss_pred CCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC--c
Confidence 66666443 345566666666666666665 543 35566666666666666652 222221 68889999888 4
Q ss_pred CCccchhccCCCCccEEecccCCCCccchh-hcCCCCCcEEEcccCCCCCCChH
Q 008287 464 LRALPRSIGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 464 l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~~~ 516 (571)
+..+|..+..+++|+.|+|++|+|+.+|.. +..+++|+.|+|++|+|.|.|..
T Consensus 462 l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 462 IMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 568888888999999999999999999986 89999999999999999999874
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.8e-29 Score=282.43 Aligned_cols=268 Identities=22% Similarity=0.346 Sum_probs=177.7
Q ss_pred CCCcEEEecCCCCCCcccccc--ccCCCCCCCEEEeeCCCCC-cccchhcCCCCccEEEcccCCCCCcchhhcCCCC-cc
Q 008287 240 KGTRDLNLQNKLMDNIEWLPD--SIGKLSSLVSLDLSENRIV-AVPATIGGLSSLKKLDLHANRIIELPDSIGDLLS-LV 315 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~--~~~~l~~L~~L~Ls~n~i~-~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~-L~ 315 (571)
++|+.|++++|.+. .+|. .+..+++|++|++++|.+. .+| .+.++++|++|+|++|.++.+|..+..+++ |+
T Consensus 305 ~~L~~L~L~~n~l~---~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 305 EKIQIIYIGYNNLK---TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380 (636)
T ss_dssp GTCCEEECCSSCCS---SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCC
T ss_pred CCCCEEECCCCcCC---ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCc
Confidence 45555555555443 2444 5556666666666666655 555 455556666666666666655556666666 66
Q ss_pred EEEccCCCCCCCchhhcCCC--CCCEEEccCCCCCC-Cchhhc-------CCcCCcEEeccCCCCCCCcccc-CCCCCCc
Q 008287 316 YLDLRGNQISALPVALSRLV--RLEELDLGSNNLSS-LPDSIG-------SLISLKKLIVETNDLEELPHTI-GQCSSLR 384 (571)
Q Consensus 316 ~L~Ls~n~i~~lp~~l~~l~--~L~~L~Ls~n~l~~-lp~~l~-------~l~~L~~L~L~~n~l~~l~~~l-~~l~~L~ 384 (571)
+|++++|.++.+|..+..+. +|++|++++|.+.. +|..+. .+++|+.|++++|.+..+|..+ ..+++|+
T Consensus 381 ~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp EEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred EEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence 66666666666665544433 56666666666653 344444 5567777777777777666543 3467777
Q ss_pred EEEccCCCCCCCcccccc--------CCccceeecccccCCcCccccC--CCCCccEEEecCCCCCCCchhhhcCCCCcE
Q 008287 385 ELRVDYNRLKALPEAVGK--------IHTLEVLSVRYNNIKQLPTTMS--SLSSLRELDVSFNELESVPESLCFATTLVK 454 (571)
Q Consensus 385 ~L~Ls~n~l~~l~~~l~~--------l~~L~~L~L~~n~i~~lp~~l~--~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~ 454 (571)
+|++++|+++.+|..+.. +++|++|+|++|.+..+|..+. .+++|++|+|++|.++.+|..+..+++|+.
T Consensus 461 ~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~ 540 (636)
T 4eco_A 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540 (636)
T ss_dssp EEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCE
T ss_pred EEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCE
Confidence 777777777766644322 2278888888888887777776 788888888888888888777778888888
Q ss_pred EEccCCc-----cCCCccchhccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCCC
Q 008287 455 MNIGNNF-----ADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVP 513 (571)
Q Consensus 455 L~L~~n~-----~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 513 (571)
|++++|. .....+|..++.+++|+.|+|++|+|+.+|..+. ++|+.|+|++|++.+.
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCccc
Confidence 8885532 1245677778888888888888888888877654 7888888888887653
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=271.54 Aligned_cols=137 Identities=22% Similarity=0.363 Sum_probs=91.7
Q ss_pred CCCCCcEEEccCCCCCCCc--cccccCCccceeecccccCCc-CccccCCCCCccEEEecCCCCC--CCchhhhcCCCCc
Q 008287 379 QCSSLRELRVDYNRLKALP--EAVGKIHTLEVLSVRYNNIKQ-LPTTMSSLSSLRELDVSFNELE--SVPESLCFATTLV 453 (571)
Q Consensus 379 ~l~~L~~L~Ls~n~l~~l~--~~l~~l~~L~~L~L~~n~i~~-lp~~l~~l~~L~~L~Ls~n~l~--~i~~~l~~~~~L~ 453 (571)
.+++|++|++++|.+..++ ..+..+++|++|++++|.+.+ .+..+..+++|++|+|++|.++ .+|..+..+++|+
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 3334444444444433221 234455556666666665554 3445666677777777777665 3666677777888
Q ss_pred EEEccCCccCCCcc-chhccCCCCccEEecccCCCCccch-hhcCCCCCcEEEcccCCCCCCChHH
Q 008287 454 KMNIGNNFADLRAL-PRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRNI 517 (571)
Q Consensus 454 ~L~L~~n~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~ 517 (571)
.|++++|. +..+ |..+..+++|+.|+|++|+++.++. .+..+++|+.|++++|++.|.|...
T Consensus 474 ~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 474 FLDLSQCQ--LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp EEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred EEECCCCc--cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 88887773 3334 6778888899999999998887764 6788899999999999999887653
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.1e-28 Score=282.66 Aligned_cols=269 Identities=22% Similarity=0.336 Sum_probs=165.3
Q ss_pred CCCCCcEEEecCCCCCCcccccc--ccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCC-c
Q 008287 238 SKKGTRDLNLQNKLMDNIEWLPD--SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLS-L 314 (571)
Q Consensus 238 ~~~~l~~L~L~~~~~~~~~~l~~--~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~-L 314 (571)
.+++|+.|+|++|.+. .+|. .+..+++|+.|+|++|.+..+| .+.++++|++|+|++|.+..+|..+..+++ |
T Consensus 546 ~l~~L~~L~Ls~N~L~---~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L 621 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLE---EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621 (876)
T ss_dssp TTTTCCEEECCSSCCC---BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTC
T ss_pred ccCCccEEEeeCCcCC---ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccC
Confidence 3345555555555443 2344 4555555555555555555554 455555555555555555555555555555 5
Q ss_pred cEEEccCCCCCCCchhhcCCCC--CCEEEccCCCCCCCch----hhc--CCcCCcEEeccCCCCCCCccccC-CCCCCcE
Q 008287 315 VYLDLRGNQISALPVALSRLVR--LEELDLGSNNLSSLPD----SIG--SLISLKKLIVETNDLEELPHTIG-QCSSLRE 385 (571)
Q Consensus 315 ~~L~Ls~n~i~~lp~~l~~l~~--L~~L~Ls~n~l~~lp~----~l~--~l~~L~~L~L~~n~l~~l~~~l~-~l~~L~~ 385 (571)
++|+|++|.++.+|..+..+.. |+.|++++|.+...+. .+. .+++|+.|++++|.+..+|..+. .+++|+.
T Consensus 622 ~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~ 701 (876)
T 4ecn_A 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701 (876)
T ss_dssp CEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSE
T ss_pred CEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCE
Confidence 5555555555555544443332 5555555555542211 111 23366666666666666665543 6677777
Q ss_pred EEccCCCCCCCcccccc--------CCccceeecccccCCcCccccC--CCCCccEEEecCCCCCCCchhhhcCCCCcEE
Q 008287 386 LRVDYNRLKALPEAVGK--------IHTLEVLSVRYNNIKQLPTTMS--SLSSLRELDVSFNELESVPESLCFATTLVKM 455 (571)
Q Consensus 386 L~Ls~n~l~~l~~~l~~--------l~~L~~L~L~~n~i~~lp~~l~--~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L 455 (571)
|++++|+++.+|..+.. +++|+.|+|++|.+..+|..+. .+++|+.|+|++|.++.+|..+..+++|+.|
T Consensus 702 L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF 781 (876)
T ss_dssp EECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEE
T ss_pred EECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEE
Confidence 77777777766654432 2377777787777777777766 7777888888888777777777777788888
Q ss_pred EccCCc-----cCCCccchhccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCC
Q 008287 456 NIGNNF-----ADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEV 512 (571)
Q Consensus 456 ~L~~n~-----~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~ 512 (571)
+|++|. .....+|..+..+++|+.|+|++|+|+.+|..+. ++|+.|+|++|++..
T Consensus 782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCE
T ss_pred ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCc
Confidence 776632 1235667777777888888888887777777544 578888888887754
No 14
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=3.9e-28 Score=249.83 Aligned_cols=261 Identities=25% Similarity=0.388 Sum_probs=191.6
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcc-cchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEE
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLD 318 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 318 (571)
++++.|++++|.+..+. +..+..+++|++|++++|.+..+ |..+.++++|++|+|++|.++.+|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELR--KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCccC--HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEE
Confidence 46778888888766543 45677888888888888888876 5577888888888888888887776554 7888888
Q ss_pred ccCCCCCCCch-hhcCCCCCCEEEccCCCCC---CCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCC
Q 008287 319 LRGNQISALPV-ALSRLVRLEELDLGSNNLS---SLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK 394 (571)
Q Consensus 319 Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~ 394 (571)
+++|.++.++. .+..+++|++|++++|.+. ..+..+..+ +|+.|++++|.++.+|..+. ++|++|++++|.++
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCC
Confidence 88888887765 4777888888888888775 234455566 88888888888887776554 67888888888887
Q ss_pred CCc-cccccCCccceeecccccCCcCcc-ccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccch-hc
Q 008287 395 ALP-EAVGKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPR-SI 471 (571)
Q Consensus 395 ~l~-~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~-~l 471 (571)
.++ ..+..+++|++|++++|.+.+++. .+..+++|++|+|++|.++.+|..+..+++|+.|++++|. +..++. .+
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~--l~~~~~~~~ 284 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN--ITKVGVNDF 284 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC--CCBCCTTSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC--CCccChhHc
Confidence 665 567778888888888888887653 6777888888888888888888878888888888888873 333332 22
Q ss_pred cC------CCCccEEecccCCCC--cc-chhhcCCCCCcEEEcccCC
Q 008287 472 GN------LEMLEELDISNNQIR--VL-PDSFRMLSRLRVLRVQENP 509 (571)
Q Consensus 472 ~~------l~~L~~L~Ls~n~l~--~l-p~~l~~l~~L~~L~L~~N~ 509 (571)
.. .+.|+.|++++|.+. .+ |..|..+++|+.|++++|.
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 22 456788888888776 33 4567788888888887774
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=2.7e-28 Score=267.84 Aligned_cols=276 Identities=24% Similarity=0.338 Sum_probs=178.9
Q ss_pred ccCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcc--cchhcCCCCccEEEcccCC-CCCcc-hhhcCC
Q 008287 236 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV--PATIGGLSSLKKLDLHANR-IIELP-DSIGDL 311 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l--~~~l~~l~~L~~L~L~~n~-l~~lp-~~l~~l 311 (571)
+..+++|+.|+|++|.+.++. +..+..+++|++|++++|.+..+ |..+.++++|++|++++|. +..+| ..+..+
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLS--SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCC--HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred ccccccCCEEECCCCccCccC--HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 445566777777777665532 44467777777777777777643 4566777777777777776 45554 356777
Q ss_pred CCccEEEccCCCCCC-Cchhhc------------------------CCCCCCEEEccCCCCCC-----------------
Q 008287 312 LSLVYLDLRGNQISA-LPVALS------------------------RLVRLEELDLGSNNLSS----------------- 349 (571)
Q Consensus 312 ~~L~~L~Ls~n~i~~-lp~~l~------------------------~l~~L~~L~Ls~n~l~~----------------- 349 (571)
++|++|++++|.++. .|..+. .+++|++|++++|.+..
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 777777777776663 232322 24455555555554432
Q ss_pred --------------------------------------------------------------------------------
Q 008287 350 -------------------------------------------------------------------------------- 349 (571)
Q Consensus 350 -------------------------------------------------------------------------------- 349 (571)
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence
Q ss_pred -----------------Cchhh-cCCcCCcEEeccCCCCCCC-c---cccCCCCCCcEEEccCCCCCCCc---cccccCC
Q 008287 350 -----------------LPDSI-GSLISLKKLIVETNDLEEL-P---HTIGQCSSLRELRVDYNRLKALP---EAVGKIH 404 (571)
Q Consensus 350 -----------------lp~~l-~~l~~L~~L~L~~n~l~~l-~---~~l~~l~~L~~L~Ls~n~l~~l~---~~l~~l~ 404 (571)
+|..+ ..+++|+.|++++|.+... | ..++.+++|+.|++++|+++.++ ..+..++
T Consensus 308 ~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp HSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred hcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 12121 2345555666666555532 1 22455666666666666666554 2356677
Q ss_pred ccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhh------------------hcCCCCcEEEccCCccCCCc
Q 008287 405 TLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESL------------------CFATTLVKMNIGNNFADLRA 466 (571)
Q Consensus 405 ~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l------------------~~~~~L~~L~L~~n~~~l~~ 466 (571)
+|++|++++|.+..+|..+..+++|++|++++|.++.++..+ ..+++|+.|++++| .+..
T Consensus 388 ~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N--~l~~ 465 (549)
T 2z81_A 388 NLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN--KLKT 465 (549)
T ss_dssp TCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS--CCSS
T ss_pred CCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC--ccCc
Confidence 777777777777777777777777777777777776554432 24667777777777 3446
Q ss_pred cchhccCCCCccEEecccCCCCccch-hhcCCCCCcEEEcccCCCCCCChH
Q 008287 467 LPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 467 lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~ 516 (571)
+|. ...+++|+.|+|++|+|+.++. .+..+++|+.|+|++|++.|.|..
T Consensus 466 ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 466 LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 765 4568888888888888887754 588899999999999999888764
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.1e-27 Score=246.02 Aligned_cols=262 Identities=22% Similarity=0.367 Sum_probs=172.2
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcc-cchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEE
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLD 318 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 318 (571)
+.++.|++++|.+..+. +..+..+++|++|+|++|.+..+ |..+.++++|++|+|++|.++.+|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIK--DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBC--TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCEeC--hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEE
Confidence 35677777777666543 34566777777777777777766 5567777777777777777776665543 5777777
Q ss_pred ccCCCCCCCch-hhcCCCCCCEEEccCCCCC---CCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCC
Q 008287 319 LRGNQISALPV-ALSRLVRLEELDLGSNNLS---SLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK 394 (571)
Q Consensus 319 Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~ 394 (571)
+++|.++.++. .+.++++|++|++++|.+. ..+..+..+++|+.|++++|.+..+|..+. ++|++|++++|+++
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCC
Confidence 77777776654 4667777777777777765 234456677777777777777776665543 67777777777776
Q ss_pred CC-ccccccCCccceeecccccCCcCc-cccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccch-hc
Q 008287 395 AL-PEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPR-SI 471 (571)
Q Consensus 395 ~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~-~l 471 (571)
.+ +..+..+++|++|++++|.+.+++ ..+..+++|++|+|++|.++.+|..+..+++|+.|++++|. +..++. .+
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~--i~~~~~~~f 283 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN--ISAIGSNDF 283 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC--CCCCCTTSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc--CCccChhhc
Confidence 54 456667777777777777777654 35666777777777777777777777777777777777763 233322 12
Q ss_pred c------CCCCccEEecccCCCCc--c-chhhcCCCCCcEEEcccCC
Q 008287 472 G------NLEMLEELDISNNQIRV--L-PDSFRMLSRLRVLRVQENP 509 (571)
Q Consensus 472 ~------~l~~L~~L~Ls~n~l~~--l-p~~l~~l~~L~~L~L~~N~ 509 (571)
. ..+.|+.|++++|.+.. + |..|..+.+|+.++|++|+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 1 23566777777776652 2 4566777777777777663
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.3e-28 Score=271.60 Aligned_cols=266 Identities=20% Similarity=0.258 Sum_probs=208.9
Q ss_pred CCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCcchh-hcCCCCcc
Q 008287 238 SKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPDS-IGDLLSLV 315 (571)
Q Consensus 238 ~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~ 315 (571)
.+++|+.|+|++|.+.++. +..|..+++|++|+|++|.+..++. .|.++++|++|+|++|.++.+|.. ++.+++|+
T Consensus 73 ~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp HCCCCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCCcEEECCCCCCCCCC--hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 4567888888888766543 4577788888888888888877654 567888888888888888877665 47788888
Q ss_pred EEEccCCCCCCCch-hhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCC-------------------CCCCCcc
Q 008287 316 YLDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETN-------------------DLEELPH 375 (571)
Q Consensus 316 ~L~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n-------------------~l~~l~~ 375 (571)
+|+|++|.+..++. .+..+++|++|++++|.++.++ ++.+++|+.|++++| .+..++.
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~ 228 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 228 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc
Confidence 88888888876654 5777888888888888777654 344455555555444 4443333
Q ss_pred ccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcC-ccccCCCCCccEEEecCCCCCCCchhhhcCCCCcE
Q 008287 376 TIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPESLCFATTLVK 454 (571)
Q Consensus 376 ~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~ 454 (571)
.+ .++|+.|++++|.++.. ..+..+++|+.|+|++|.+.++ |..+..+++|++|+|++|.++.+|..+..+++|+.
T Consensus 229 ~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 305 (597)
T 3oja_B 229 PV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV 305 (597)
T ss_dssp SC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCE
T ss_pred cc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcE
Confidence 22 35788888888888875 5678889999999999999885 67889999999999999999999888888999999
Q ss_pred EEccCCccCCCccchhccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCCCC
Q 008287 455 MNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPP 514 (571)
Q Consensus 455 L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 514 (571)
|+|++| .+..+|..+..+++|+.|+|++|+|+.++ +..+++|+.|+|++|+|.|.+
T Consensus 306 L~Ls~N--~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 306 LDLSHN--HLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp EECCSS--CCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred EECCCC--CCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence 999999 45578888889999999999999999886 678899999999999998754
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=2.9e-28 Score=256.33 Aligned_cols=267 Identities=23% Similarity=0.327 Sum_probs=223.4
Q ss_pred CCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCcc-hhhcCCCCccE
Q 008287 239 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVY 316 (571)
Q Consensus 239 ~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~ 316 (571)
+++++.|+++++.+..+. +..+..+++|++|++++|.+..++. .|.++++|++|+|++|.++.++ ..+..+++|++
T Consensus 44 l~~l~~l~l~~~~l~~l~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLP--AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEESEEC--THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchhhCC--hhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 468999999999776654 3447889999999999999998864 8999999999999999999875 46899999999
Q ss_pred EEccCCCCCCCchh-hcCCCCCCEEEccCCCCCCCc-hhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCC---
Q 008287 317 LDLRGNQISALPVA-LSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYN--- 391 (571)
Q Consensus 317 L~Ls~n~i~~lp~~-l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n--- 391 (571)
|++++|.++.+|.. +.++++|++|++++|.+..++ ..+..+++|+.|++++|.++.++ +..+++|++|++++|
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc
Confidence 99999999999875 589999999999999999775 45889999999999999988763 344455555555544
Q ss_pred ----------------CCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCC-chhhhcCCCCcE
Q 008287 392 ----------------RLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESV-PESLCFATTLVK 454 (571)
Q Consensus 392 ----------------~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i-~~~l~~~~~L~~ 454 (571)
.+..++.. ..++|+.|++++|.+.+. ..+..+++|++|+|++|.++.+ +..+..+++|+.
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred ccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 44444322 236788899999988876 4678899999999999999876 667888999999
Q ss_pred EEccCCccCCCccchhccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCCCC
Q 008287 455 MNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPP 514 (571)
Q Consensus 455 L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 514 (571)
|++++| .+..+|..+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|+++..+
T Consensus 277 L~L~~n--~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 277 LYISNN--RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp EECCSS--CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred EECCCC--cCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC
Confidence 999998 5667787788899999999999999999988899999999999999987654
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=4e-28 Score=269.72 Aligned_cols=312 Identities=21% Similarity=0.225 Sum_probs=184.2
Q ss_pred hcccccccCCccccccccccCcccccccccccccCCCCCccchHHhhhhhccccCCCCCcEEEecCCCCCCccccccccC
Q 008287 184 KAKSSFYSDGMGVVGTVVSSTPQIHDSTLKSGAVSGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIG 263 (571)
Q Consensus 184 ~~~~~~~~~g~~~i~~~~~~~~~i~d~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~L~L~~~~~~~~~~l~~~~~ 263 (571)
...+.|...++..++..++.... .+.+ .+.....+. -..+..+++|+.|+|++|.+..+. |..|.
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~--~L~L-----s~n~i~~~~------~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~ 78 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTE--CLEF-----SFNVLPTIQ------NTTFSRLINLTFLDLTRCQIYWIH--EDTFQ 78 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCC--EEEC-----TTCCCSEEC------TTTSTTCTTCSEEECTTCCCCEEC--TTTTT
T ss_pred CceEECCCCCcccCcCCCCCcCc--EEEc-----cCCccCcCC------hhHhccCccceEEECCCCccceeC--hhhcc
Confidence 44567888777777754443221 2222 111111111 013456677888888887666543 66677
Q ss_pred CCCCCCEEEeeCCCCCcc-cchhcCCCCccEEEcccCCCCCc-chhhcCCCCccEEEccCCCCCCCc-hhhcCCCCCCEE
Q 008287 264 KLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLDLRGNQISALP-VALSRLVRLEEL 340 (571)
Q Consensus 264 ~l~~L~~L~Ls~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~i~~lp-~~l~~l~~L~~L 340 (571)
.+++|++|+|++|.+..+ |..|.++++|++|++++|.++.+ +..++.+++|++|++++|.+..++ ..+..+++|++|
T Consensus 79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158 (606)
T ss_dssp TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence 778888888888877765 45677777888888888777766 456777777777777777777652 233447777777
Q ss_pred EccCCCCCCC-chhhcCCcCCc--EEeccCCCCCCCcc------------------------------------------
Q 008287 341 DLGSNNLSSL-PDSIGSLISLK--KLIVETNDLEELPH------------------------------------------ 375 (571)
Q Consensus 341 ~Ls~n~l~~l-p~~l~~l~~L~--~L~L~~n~l~~l~~------------------------------------------ 375 (571)
++++|.+..+ +..++.+++|+ .|++++|.+..+++
T Consensus 159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred EcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence 7777777755 34466666666 56666665543322
Q ss_pred ----------------------------------ccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcC-c
Q 008287 376 ----------------------------------TIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQL-P 420 (571)
Q Consensus 376 ----------------------------------~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~l-p 420 (571)
.+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+ |
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch
Confidence 14445555555555555555555555555555555555555553 3
Q ss_pred cccCCCCCccEEEecCCCCC-CCch-hhhcCCCCcEEEccCCccCCCcc---chhccCCCCccEEecccCCCCcc-chhh
Q 008287 421 TTMSSLSSLRELDVSFNELE-SVPE-SLCFATTLVKMNIGNNFADLRAL---PRSIGNLEMLEELDISNNQIRVL-PDSF 494 (571)
Q Consensus 421 ~~l~~l~~L~~L~Ls~n~l~-~i~~-~l~~~~~L~~L~L~~n~~~l~~l---p~~l~~l~~L~~L~Ls~n~l~~l-p~~l 494 (571)
..+..+++|++|++++|.+. .++. .+..+++|+.|++++|.. ..+ +..+..+++|+.|++++|++..+ |..+
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 396 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI--ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC--CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc--ccccCcchhcccCCCCCEEECCCCcCCcCCHHHh
Confidence 34555555555555555544 3332 244555566666655522 222 34556666666666666666644 3456
Q ss_pred cCCCCCcEEEcccCCCCC
Q 008287 495 RMLSRLRVLRVQENPLEV 512 (571)
Q Consensus 495 ~~l~~L~~L~L~~N~l~~ 512 (571)
..+++|+.|++++|.+..
T Consensus 397 ~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKV 414 (606)
T ss_dssp TTCTTCSEEECTTCCEEC
T ss_pred cCCccCCeEECCCCcCCC
Confidence 666667777777666643
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=3.4e-28 Score=260.73 Aligned_cols=275 Identities=25% Similarity=0.358 Sum_probs=229.1
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCC-cc-cchhcCCCCccEEEcccCCCCCc-chhhcCCCCccE
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIV-AV-PATIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVY 316 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~-~l-~~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~ 316 (571)
++++.|+|++|.+.++. |..+..+++|++|++++|.+. .+ +..|.++++|++|+|++|.++.+ |..++.+++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELN--ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEEC--TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCC--hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 68999999999887653 778999999999999999987 55 45789999999999999999976 778999999999
Q ss_pred EEccCCCCCC-Cchh--hcCCCCCCEEEccCCCCCCC-chh-hcCCcCCcEEeccCCCCCCCc-cccC------------
Q 008287 317 LDLRGNQISA-LPVA--LSRLVRLEELDLGSNNLSSL-PDS-IGSLISLKKLIVETNDLEELP-HTIG------------ 378 (571)
Q Consensus 317 L~Ls~n~i~~-lp~~--l~~l~~L~~L~Ls~n~l~~l-p~~-l~~l~~L~~L~L~~n~l~~l~-~~l~------------ 378 (571)
|++++|.++. ++.. +..+++|++|++++|.+..+ |.. +..+++|++|++++|.+..++ ..+.
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 9999999986 4444 88999999999999999977 554 889999999999999987553 2332
Q ss_pred ----------------------CCCCCcEEEccCCCCCC-Cccccc----------------------------------
Q 008287 379 ----------------------QCSSLRELRVDYNRLKA-LPEAVG---------------------------------- 401 (571)
Q Consensus 379 ----------------------~l~~L~~L~Ls~n~l~~-l~~~l~---------------------------------- 401 (571)
.+++|++|++++|+++. ++..+.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 33678888888887752 111110
Q ss_pred -----cCCccceeecccccCCc-CccccCCCCCccEEEecCCCCCCC-chhhhcCCCCcEEEccCCccCCCcc-chhccC
Q 008287 402 -----KIHTLEVLSVRYNNIKQ-LPTTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRAL-PRSIGN 473 (571)
Q Consensus 402 -----~l~~L~~L~L~~n~i~~-lp~~l~~l~~L~~L~Ls~n~l~~i-~~~l~~~~~L~~L~L~~n~~~l~~l-p~~l~~ 473 (571)
..++|++|++++|.+.+ .|..+..+++|++|+|++|.++.+ +..+..+++|+.|++++|. +..+ |..++.
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~ 345 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF--LGSIDSRMFEN 345 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CCEECGGGGTT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc--cCCcChhHhcC
Confidence 12578889999998887 467789999999999999999976 5578899999999999994 3444 678899
Q ss_pred CCCccEEecccCCCCcc-chhhcCCCCCcEEEcccCCCCCCChHHH
Q 008287 474 LEMLEELDISNNQIRVL-PDSFRMLSRLRVLRVQENPLEVPPRNIV 518 (571)
Q Consensus 474 l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 518 (571)
+++|+.|+|++|+|+.+ |..+..+++|+.|+|++|.++..+...+
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence 99999999999999977 6789999999999999999988776543
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2.6e-29 Score=256.73 Aligned_cols=246 Identities=24% Similarity=0.361 Sum_probs=182.0
Q ss_pred CCcEEEecCCCCCCccccccccCCCCCCCEEEeeC-CCCC-cccchhcCCCCccEEEcccCCCC-CcchhhcCCCCccEE
Q 008287 241 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSE-NRIV-AVPATIGGLSSLKKLDLHANRII-ELPDSIGDLLSLVYL 317 (571)
Q Consensus 241 ~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~-n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L 317 (571)
.++.|+|+++.+.+...+|..+..+++|++|++++ |.+. .+|..+.++++|++|+|++|.++ .+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 57888999988775334678888899999999985 7776 56778888888999999888887 677788888888888
Q ss_pred EccCCCCC-CCchhhcCCCCCCEEEccCCCCC-CCchhhcCCc-CCcEEeccCCCCC-CCccccCCCCCCcEEEccCCCC
Q 008287 318 DLRGNQIS-ALPVALSRLVRLEELDLGSNNLS-SLPDSIGSLI-SLKKLIVETNDLE-ELPHTIGQCSSLRELRVDYNRL 393 (571)
Q Consensus 318 ~Ls~n~i~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~-~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~Ls~n~l 393 (571)
++++|.+. .+|..+..+++|++|++++|.++ .+|..++.++ +|+.|++++|.+. .+|..+..++ |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 88888888 57778888888888888888887 6777777776 7777777777776 4566666665 77777777766
Q ss_pred C-CCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhcc
Q 008287 394 K-ALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIG 472 (571)
Q Consensus 394 ~-~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~ 472 (571)
+ .++..+..+++|+.|++++|.+...+..+..+++|++|+|++|.++ +.+|.++.
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~------------------------~~~p~~l~ 265 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY------------------------GTLPQGLT 265 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE------------------------ECCCGGGG
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc------------------------CcCChHHh
Confidence 5 3445566666666666666666654444566666666666666654 13455677
Q ss_pred CCCCccEEecccCCCC-ccchhhcCCCCCcEEEcccCCCCC
Q 008287 473 NLEMLEELDISNNQIR-VLPDSFRMLSRLRVLRVQENPLEV 512 (571)
Q Consensus 473 ~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 512 (571)
.+++|+.|+|++|+++ .+|.. ..+++|+.|++.+|+.-|
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 7778888888888777 55654 778888888888888543
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.9e-27 Score=263.11 Aligned_cols=326 Identities=25% Similarity=0.279 Sum_probs=230.2
Q ss_pred cccccchhhhhcccccccCCccccccccccCcccccccccccccCCCCCccchHHhhhhhccccCCCCCcEEEecCCCCC
Q 008287 174 LFTRDDSYVKKAKSSFYSDGMGVVGTVVSSTPQIHDSTLKSGAVSGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMD 253 (571)
Q Consensus 174 ~~~~~d~~~~~~~~~~~~~g~~~i~~~~~~~~~i~d~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~L~L~~~~~~ 253 (571)
.|.+|........+.|...++..|+..++...+. +. +.+.....+. -..+..+++|+.|+|++|.+.
T Consensus 23 ~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~--Ld-----Ls~N~i~~l~------~~~f~~l~~L~~L~Ls~N~i~ 89 (635)
T 4g8a_A 23 SWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKN--LD-----LSFNPLRHLG------SYSFFSFPELQVLDLSRCEIQ 89 (635)
T ss_dssp --CCSEEEETTTEEECTTSCCSSCCSSSCTTCCE--EE-----CTTSCCCEEC------TTTTTTCTTCCEEECTTCCCC
T ss_pred CCCCccccCCCCEEECCCCCcCccCCCCCcCCCE--EE-----eeCCCCCCCC------HHHHhCCCCCCEEECCCCcCC
Confidence 4666777777777899999999888655432222 22 2222111111 023567889999999999887
Q ss_pred CccccccccCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCcch-hhcCCCCccEEEccCCCCCC--Cch
Q 008287 254 NIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISA--LPV 329 (571)
Q Consensus 254 ~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~i~~--lp~ 329 (571)
.+. +..|..+++|++|+|++|+++.+|. .|.++++|++|+|++|+++.++. .|+++++|++|++++|.++. +|.
T Consensus 90 ~i~--~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~ 167 (635)
T 4g8a_A 90 TIE--DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 167 (635)
T ss_dssp EEC--TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred CcC--hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch
Confidence 765 5678999999999999999999875 68999999999999999998865 58999999999999999985 567
Q ss_pred hhcCCCCCCEEEccCCCCCCCc-hhhcCCc--------------------------------------------------
Q 008287 330 ALSRLVRLEELDLGSNNLSSLP-DSIGSLI-------------------------------------------------- 358 (571)
Q Consensus 330 ~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~-------------------------------------------------- 358 (571)
.+..+++|++|++++|.+..++ ..+..+.
T Consensus 168 ~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~ 247 (635)
T 4g8a_A 168 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 247 (635)
T ss_dssp GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHT
T ss_pred hhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcC
Confidence 8899999999999999876432 1111100
Q ss_pred --------------------------------------------------------------------------------
Q 008287 359 -------------------------------------------------------------------------------- 358 (571)
Q Consensus 359 -------------------------------------------------------------------------------- 358 (571)
T Consensus 248 l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 327 (635)
T 4g8a_A 248 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 327 (635)
T ss_dssp TTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSC
T ss_pred Ccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccc
Confidence
Q ss_pred -CCcEEeccCCCCCCCc--------------------cccCCCCCCcEEEccCCCC------------------------
Q 008287 359 -SLKKLIVETNDLEELP--------------------HTIGQCSSLRELRVDYNRL------------------------ 393 (571)
Q Consensus 359 -~L~~L~L~~n~l~~l~--------------------~~l~~l~~L~~L~Ls~n~l------------------------ 393 (571)
+|+.|++.+|.+..++ .....+++|+.|++++|.+
T Consensus 328 ~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~ 407 (635)
T 4g8a_A 328 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN 407 (635)
T ss_dssp CCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC
T ss_pred hhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccc
Confidence 1111211111111000 0001123344444443322
Q ss_pred --------------------------------------------------CC-CccccccCCccceeecccccCCc--Cc
Q 008287 394 --------------------------------------------------KA-LPEAVGKIHTLEVLSVRYNNIKQ--LP 420 (571)
Q Consensus 394 --------------------------------------------------~~-l~~~l~~l~~L~~L~L~~n~i~~--lp 420 (571)
.. .+..+..++.|+.|++++|.+.. .|
T Consensus 408 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~ 487 (635)
T 4g8a_A 408 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 487 (635)
T ss_dssp SEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCc
Confidence 11 11223345667777777776443 56
Q ss_pred cccCCCCCccEEEecCCCCCCC-chhhhcCCCCcEEEccCCccCCCcc-chhccCCCCccEEecccCCCCccc-hhhcCC
Q 008287 421 TTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRAL-PRSIGNLEMLEELDISNNQIRVLP-DSFRML 497 (571)
Q Consensus 421 ~~l~~l~~L~~L~Ls~n~l~~i-~~~l~~~~~L~~L~L~~n~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l 497 (571)
..+..+++|++|+|++|.++.+ |..+..+++|+.|+|++|. +..+ |..+..+++|+.|+|++|+|+.++ +.+..+
T Consensus 488 ~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~--l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN--FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred hhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc--CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 7789999999999999999976 5678899999999999994 4445 456899999999999999999774 578887
Q ss_pred -CCCcEEEcccCCCCCCChH
Q 008287 498 -SRLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 498 -~~L~~L~L~~N~l~~~~~~ 516 (571)
++|+.|+|++|||.|+|..
T Consensus 566 ~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 566 PSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CTTCCEEECTTCCBCCSGGG
T ss_pred hCcCCEEEeeCCCCcccCCc
Confidence 6899999999999999974
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=7.8e-28 Score=259.78 Aligned_cols=276 Identities=26% Similarity=0.382 Sum_probs=241.4
Q ss_pred CCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcc-cchhcCCCCccEEEcccCCCCCcch-hhcCCCCccE
Q 008287 239 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVY 316 (571)
Q Consensus 239 ~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~ 316 (571)
.++++.|+|++|.+..+. +..|..+++|++|+|++|.+..+ |..|.++++|++|+|++|.++.+|. .+..+++|++
T Consensus 31 ~~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLN--QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CTTCSEEECCSSCCCEEC--TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCCcEEECCCCccceEC--HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 357999999999887764 67899999999999999999987 6689999999999999999998876 4789999999
Q ss_pred EEccCCCCCCC-chhhcCCCCCCEEEccCCCCCCCc-hhhcCCcCCcEEeccCCCCCCCcc-ccCCCCCCcEEEccCCCC
Q 008287 317 LDLRGNQISAL-PVALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRL 393 (571)
Q Consensus 317 L~Ls~n~i~~l-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l 393 (571)
|+|++|.+..+ +..+..+++|++|++++|.+..++ ..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 99999999976 457899999999999999998664 568899999999999999998875 588999999999999999
Q ss_pred CCCc-cccccCCccceeecccccCCc-CccccCCCCCccEEEecCCCCCCCch-hhhcCCCCcEEEccCCccCCCccc-h
Q 008287 394 KALP-EAVGKIHTLEVLSVRYNNIKQ-LPTTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIGNNFADLRALP-R 469 (571)
Q Consensus 394 ~~l~-~~l~~l~~L~~L~L~~n~i~~-lp~~l~~l~~L~~L~Ls~n~l~~i~~-~l~~~~~L~~L~L~~n~~~l~~lp-~ 469 (571)
..++ ..+..+++|+.|++++|...+ ++.......+|++|+|++|.++.+|. .+..+++|+.|++++|. +..++ .
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~ 266 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP--ISTIEGS 266 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC--CCEECTT
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc--CCccChh
Confidence 8765 468889999999999986554 66666666799999999999999884 67889999999999995 33443 4
Q ss_pred hccCCCCccEEecccCCCCcc-chhhcCCCCCcEEEcccCCCCCCChHHH
Q 008287 470 SIGNLEMLEELDISNNQIRVL-PDSFRMLSRLRVLRVQENPLEVPPRNIV 518 (571)
Q Consensus 470 ~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 518 (571)
.+..+++|+.|+|++|+|+.+ |..|..+++|+.|+|++|.++..+...+
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 316 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence 678999999999999999977 5689999999999999999988776543
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=2.5e-27 Score=255.35 Aligned_cols=264 Identities=23% Similarity=0.401 Sum_probs=155.7
Q ss_pred ccCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcch---------
Q 008287 236 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD--------- 306 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~--------- 306 (571)
+..+++|+.|++++|.+..+. . +..+++|++|++++|.+..++. +.++++|++|++++|.+..++.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 160 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADIT---P-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQ 160 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSE
T ss_pred hhccccCCEEECCCCccccCh---h-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccE
Confidence 445556666666666555432 2 5666667777776666666654 6666677777776666655432
Q ss_pred -----------hhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCcc
Q 008287 307 -----------SIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPH 375 (571)
Q Consensus 307 -----------~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~ 375 (571)
.+..+++|++|++++|.+..++ .+..+++|++|++++|.+..++. ++.+++|+.|++++|.+..++
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~- 237 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG- 237 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-
T ss_pred eecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-
Confidence 1233444444555555444443 24445555555555555544432 444555555555555555442
Q ss_pred ccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEE
Q 008287 376 TIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKM 455 (571)
Q Consensus 376 ~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L 455 (571)
.+..+++|++|++++|.+..++. +..+++|+.|++++|.+.+++. +..+++|++|++++|.++.++. +..+++|+.|
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 314 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYL 314 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEE
T ss_pred hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEE
Confidence 34555666666666666655543 5556666666666666666544 5666666666666666666554 5566677777
Q ss_pred EccCCccCCCccchhccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCCCC
Q 008287 456 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPP 514 (571)
Q Consensus 456 ~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 514 (571)
++++|. +..++. +..+++|+.|++++|+++.++ .+..+++|+.|++++|+++...
T Consensus 315 ~L~~n~--l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 315 TLYFNN--ISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp ECCSSC--CSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCG
T ss_pred ECcCCc--CCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccc
Confidence 777663 333332 566777777777777777664 4677777777777777776544
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.8e-27 Score=243.07 Aligned_cols=261 Identities=22% Similarity=0.363 Sum_probs=228.2
Q ss_pred CCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCc-chhhcCCCCccEEE
Q 008287 241 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLD 318 (571)
Q Consensus 241 ~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~ 318 (571)
.++.++++++.+.. +|..+. ++|++|++++|.+..++. .|.++++|++|+|++|.++.+ |..+..+++|++|+
T Consensus 32 ~l~~l~~~~~~l~~---lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEK---VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCS---CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccc---cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 57888988886655 454443 789999999999998865 789999999999999999987 77899999999999
Q ss_pred ccCCCCCCCchhhcCCCCCCEEEccCCCCCCCch-hhcCCcCCcEEeccCCCCC---CCccccCCCCCCcEEEccCCCCC
Q 008287 319 LRGNQISALPVALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDLE---ELPHTIGQCSSLRELRVDYNRLK 394 (571)
Q Consensus 319 Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~---~l~~~l~~l~~L~~L~Ls~n~l~ 394 (571)
+++|.++.+|..+. ++|++|++++|.+..++. .+..+++|+.|++++|.+. ..+..+..+++|++|++++|.++
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99999999987665 799999999999998765 4889999999999999986 34567889999999999999999
Q ss_pred CCccccccCCccceeecccccCCcC-ccccCCCCCccEEEecCCCCCCCch-hhhcCCCCcEEEccCCccCCCccchhcc
Q 008287 395 ALPEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIGNNFADLRALPRSIG 472 (571)
Q Consensus 395 ~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~Ls~n~l~~i~~-~l~~~~~L~~L~L~~n~~~l~~lp~~l~ 472 (571)
.+|..+. ++|++|++++|.+.++ +..+..+++|++|+|++|.++.++. .+..+++|+.|++++| .+..+|.++.
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~lp~~l~ 260 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN--KLVKVPGGLA 260 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS--CCSSCCTTTT
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC--cCccCChhhc
Confidence 9987654 8999999999999986 5789999999999999999997764 7888999999999999 4568999999
Q ss_pred CCCCccEEecccCCCCccch-hhc------CCCCCcEEEcccCCCCC
Q 008287 473 NLEMLEELDISNNQIRVLPD-SFR------MLSRLRVLRVQENPLEV 512 (571)
Q Consensus 473 ~l~~L~~L~Ls~n~l~~lp~-~l~------~l~~L~~L~L~~N~l~~ 512 (571)
.+++|+.|+|++|+|+.++. .|. ..+.|+.|++.+||+..
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 99999999999999998875 343 24789999999999864
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=5.3e-28 Score=276.41 Aligned_cols=248 Identities=28% Similarity=0.451 Sum_probs=202.0
Q ss_pred CCCCCEEEeeCCCCC-cccchhcCCCCccEEEcccCCCC-CcchhhcCCCCccEEEccCCCCC-CCchhhcCCCCCCEEE
Q 008287 265 LSSLVSLDLSENRIV-AVPATIGGLSSLKKLDLHANRII-ELPDSIGDLLSLVYLDLRGNQIS-ALPVALSRLVRLEELD 341 (571)
Q Consensus 265 l~~L~~L~Ls~n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n~i~-~lp~~l~~l~~L~~L~ 341 (571)
+++|++|++++|.+. .+|..+.++++|++|+|++|.++ .+|..++.+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 556777777777666 45667788888888888888877 56778888888888888888888 5777888888888888
Q ss_pred ccCCCCC-CCchhhcCCcCCcEEeccCCCCC-CCccccCCCCCCcEEEccCCCCC-CCccccccCCccceeecccccCCc
Q 008287 342 LGSNNLS-SLPDSIGSLISLKKLIVETNDLE-ELPHTIGQCSSLRELRVDYNRLK-ALPEAVGKIHTLEVLSVRYNNIKQ 418 (571)
Q Consensus 342 Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~L~~n~i~~ 418 (571)
+++|.+. .+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|++. .+|..+..+++|+.|++++|.+.+
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 8888887 67777888888888888888887 66778888888888888888887 677888888888888888887653
Q ss_pred -Ccc----------------------------------------------------------------------ccCCCC
Q 008287 419 -LPT----------------------------------------------------------------------TMSSLS 427 (571)
Q Consensus 419 -lp~----------------------------------------------------------------------~l~~l~ 427 (571)
+|. .+..++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 332 233456
Q ss_pred CccEEEecCCCCC-CCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCC-ccchhhcCCCCCcEEEc
Q 008287 428 SLRELDVSFNELE-SVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR-VLPDSFRMLSRLRVLRV 505 (571)
Q Consensus 428 ~L~~L~Ls~n~l~-~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 505 (571)
+|+.|+|++|.++ .+|..++.+++|+.|+|++|... +.+|..++.+++|+.|||++|+++ .+|..+..++.|++|+|
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS-GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccC-CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 7889999999988 67888899999999999998543 578889999999999999999998 77888999999999999
Q ss_pred ccCCCCCC
Q 008287 506 QENPLEVP 513 (571)
Q Consensus 506 ~~N~l~~~ 513 (571)
++|+++..
T Consensus 712 s~N~l~g~ 719 (768)
T 3rgz_A 712 SNNNLSGP 719 (768)
T ss_dssp CSSEEEEE
T ss_pred cCCccccc
Confidence 99988643
No 27
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.5e-28 Score=251.47 Aligned_cols=281 Identities=24% Similarity=0.316 Sum_probs=224.4
Q ss_pred cEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCc-chhhcCCCCccEEEcc
Q 008287 243 RDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLDLR 320 (571)
Q Consensus 243 ~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls 320 (571)
...+++++.+.. +|..+. ++|++|++++|.+..++. .+.++++|++|+|++|.++.+ +..+..+++|++|+++
T Consensus 34 ~~c~~~~~~l~~---iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 34 GICKGSSGSLNS---IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp SEEECCSTTCSS---CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEeeCCCCCccc---cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 346666665554 455443 589999999999988865 788899999999999999877 4568889999999999
Q ss_pred CCCCCCCchh-hcCCCCCCEEEccCCCCCCCch--hhcCCcCCcEEeccCC-CCCCC-ccccCCCCCCcEEEccCCCCCC
Q 008287 321 GNQISALPVA-LSRLVRLEELDLGSNNLSSLPD--SIGSLISLKKLIVETN-DLEEL-PHTIGQCSSLRELRVDYNRLKA 395 (571)
Q Consensus 321 ~n~i~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~n-~l~~l-~~~l~~l~~L~~L~Ls~n~l~~ 395 (571)
+|.++.++.. +.++++|++|++++|.+..+|. .+..+++|++|++++| .+..+ +..+..+++|++|++++|.++.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 9999988875 7889999999999999998876 5788999999999988 46666 4578889999999999999886
Q ss_pred C-ccccccCCccceeecccccCCcCccc-cCCCCCccEEEecCCCCCCCch----hhhcCCCCcEEEccCCccC---CCc
Q 008287 396 L-PEAVGKIHTLEVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPE----SLCFATTLVKMNIGNNFAD---LRA 466 (571)
Q Consensus 396 l-~~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~Ls~n~l~~i~~----~l~~~~~L~~L~L~~n~~~---l~~ 466 (571)
+ +..+..+++|++|++++|.+..++.. +..+++|++|++++|.++.++. .......++.+++.++... +..
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 5 67788889999999999998887654 3558899999999998886542 2234567888888876322 234
Q ss_pred cchhccCCCCccEEecccCCCCccchh-hcCCCCCcEEEcccCCCCCCChHHHhcCHHHHHHHHHHHhhhhc
Q 008287 467 LPRSIGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVVQYMADLVEKRD 537 (571)
Q Consensus 467 lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (571)
+|.++..+++|+.|+|++|+|+.+|.. |..+++|+.|+|++|++.|.|..+ .++..|.....
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l---------~~l~~~~~~~~ 331 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI---------DYLSRWLNKNS 331 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH---------HHHHHHHHHTT
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCc---------HHHHHHHHhcc
Confidence 788899999999999999999999986 589999999999999999988643 35555555443
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=8.9e-27 Score=251.01 Aligned_cols=266 Identities=26% Similarity=0.419 Sum_probs=228.0
Q ss_pred ccCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccc--------------------hhcCCCCccEEE
Q 008287 236 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA--------------------TIGGLSSLKKLD 295 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~--------------------~l~~l~~L~~L~ 295 (571)
+..+++|+.|++++|.+..+. .+..+++|++|++++|.+..++. .+.++++|++|+
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDID----PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 183 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCG----GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEE
T ss_pred hcCCCCCCEEECCCCCCCCCh----HHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEE
Confidence 456677778888777666543 26677777777777776654432 266788999999
Q ss_pred cccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCcc
Q 008287 296 LHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPH 375 (571)
Q Consensus 296 L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~ 375 (571)
+++|.+..++ .+..+++|++|++++|.+..++. ++.+++|++|++++|.+..++ .+..+++|+.|++++|.+..++.
T Consensus 184 l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 184 ISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP 260 (466)
T ss_dssp CCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG
T ss_pred CcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh
Confidence 9999998874 48899999999999999998865 788999999999999999884 58899999999999999998866
Q ss_pred ccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEE
Q 008287 376 TIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKM 455 (571)
Q Consensus 376 ~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L 455 (571)
+..+++|++|++++|.++.++. +..+++|+.|++++|.+.+++. +..+++|++|+|++|.+++++. +..+++|+.|
T Consensus 261 -~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 336 (466)
T 1o6v_A 261 -LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRL 336 (466)
T ss_dssp -GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEE
T ss_pred -hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEe
Confidence 8899999999999999998876 7889999999999999999865 8899999999999999998766 7889999999
Q ss_pred EccCCccCCCccchhccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCCCChH
Q 008287 456 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 456 ~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 516 (571)
++++|. +..++ .+..+++|+.|++++|+++.++. +..+++|+.|++++|+++..|..
T Consensus 337 ~l~~n~--l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 337 FFYNNK--VSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp ECCSSC--CCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBC
T ss_pred ECCCCc--cCCch-hhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchh
Confidence 999994 44554 78999999999999999998876 89999999999999999876543
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=2.9e-27 Score=262.84 Aligned_cols=277 Identities=22% Similarity=0.323 Sum_probs=222.3
Q ss_pred ccCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcc-cchhcCCCCccEEEcccCCCC-Ccch-hhcCCC
Q 008287 236 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRII-ELPD-SIGDLL 312 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l-~~~l~~l~~L~~L~L~~n~l~-~lp~-~l~~l~ 312 (571)
+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+..+ |..+.++++|++|++++|.+. .++. .+..++
T Consensus 274 ~~~l~~L~~L~l~~n~l~---~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS---ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTCTTCSEEECTTSCCS---CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred hccccCCCEEeccCCccC---CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 445677888888888665 3566778888888888888888866 446778888888888888776 5544 477888
Q ss_pred CccEEEccCCCCCCC---chhhcCCCCCCEEEccCCCCCCC-chhhcCCcCCcEEeccCCCCCCC-c-cccCCCCCCcEE
Q 008287 313 SLVYLDLRGNQISAL---PVALSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETNDLEEL-P-HTIGQCSSLREL 386 (571)
Q Consensus 313 ~L~~L~Ls~n~i~~l---p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-~-~~l~~l~~L~~L 386 (571)
+|++|++++|.+..+ +..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+... + ..+..+++|+.|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 888888888888865 45778888888888888888754 45678888899999998888754 2 347888999999
Q ss_pred EccCCCCCCC-ccccccCCccceeecccccCCc--C--ccccCCCCCccEEEecCCCCCCC-chhhhcCCCCcEEEccCC
Q 008287 387 RVDYNRLKAL-PEAVGKIHTLEVLSVRYNNIKQ--L--PTTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNN 460 (571)
Q Consensus 387 ~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~--l--p~~l~~l~~L~~L~Ls~n~l~~i-~~~l~~~~~L~~L~L~~n 460 (571)
++++|.++.. +..+..+++|++|++++|.+.+ + +..+..+++|++|++++|.++.+ |..+..+++|+.|++++|
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 9999998754 5677888999999999998876 2 25688899999999999999876 567888999999999998
Q ss_pred ccCCCccchhccCCCCccEEecccCCCCccc-hhhcCCCCCcEEEcccCCCCCCChHH
Q 008287 461 FADLRALPRSIGNLEMLEELDISNNQIRVLP-DSFRMLSRLRVLRVQENPLEVPPRNI 517 (571)
Q Consensus 461 ~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~ 517 (571)
... ...|..+..++.| .|+|++|+++.++ ..+..+++|+.|++++||+.|.|...
T Consensus 511 ~l~-~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 511 RLT-SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp CCC-GGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred ccC-cCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 533 3457788999999 9999999999775 56888999999999999999988743
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=3.6e-27 Score=242.59 Aligned_cols=259 Identities=24% Similarity=0.364 Sum_probs=226.6
Q ss_pred CCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCccc-chhcCCCCccEEEcccCCCCCc-chhhcCCCCccEEE
Q 008287 241 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLD 318 (571)
Q Consensus 241 ~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~ 318 (571)
.++.++++++.+.. +|..+ .++|++|++++|.+..++ ..|.++++|++|+|++|.++.+ |..+..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~~---ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA---VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCSS---CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCccc---cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 57889999987664 45544 379999999999999885 4799999999999999999977 67899999999999
Q ss_pred ccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchh-hcCCcCCcEEeccCCCCCC---CccccCCCCCCcEEEccCCCCC
Q 008287 319 LRGNQISALPVALSRLVRLEELDLGSNNLSSLPDS-IGSLISLKKLIVETNDLEE---LPHTIGQCSSLRELRVDYNRLK 394 (571)
Q Consensus 319 Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~---l~~~l~~l~~L~~L~Ls~n~l~ 394 (571)
+++|.++.+|..+. ++|++|++++|.+..++.. +..+++|+.|++++|.+.. .+..+..+ +|++|++++|+++
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 99999999987665 8999999999999988764 8899999999999999863 35566777 9999999999999
Q ss_pred CCccccccCCccceeecccccCCcCc-cccCCCCCccEEEecCCCCCCCch-hhhcCCCCcEEEccCCccCCCccchhcc
Q 008287 395 ALPEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIGNNFADLRALPRSIG 472 (571)
Q Consensus 395 ~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~Ls~n~l~~i~~-~l~~~~~L~~L~L~~n~~~l~~lp~~l~ 472 (571)
.+|..+. ++|++|++++|.+..++ ..+..+++|++|+|++|.++.++. .+..+++|+.|++++| .+..+|..+.
T Consensus 186 ~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N--~l~~lp~~l~ 261 (332)
T 2ft3_A 186 GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN--KLSRVPAGLP 261 (332)
T ss_dssp SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS--CCCBCCTTGG
T ss_pred ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC--cCeecChhhh
Confidence 9987654 79999999999999975 688999999999999999998765 6888999999999999 4568999999
Q ss_pred CCCCccEEecccCCCCccch-hhcC------CCCCcEEEcccCCCC
Q 008287 473 NLEMLEELDISNNQIRVLPD-SFRM------LSRLRVLRVQENPLE 511 (571)
Q Consensus 473 ~l~~L~~L~Ls~n~l~~lp~-~l~~------l~~L~~L~L~~N~l~ 511 (571)
.+++|+.|+|++|+|+.++. .|.. .+.|+.|++.+|++.
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 99999999999999998864 3433 478999999999986
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.9e-27 Score=264.32 Aligned_cols=267 Identities=24% Similarity=0.332 Sum_probs=225.1
Q ss_pred CCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCcch-hhcCCCCccE
Q 008287 239 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVY 316 (571)
Q Consensus 239 ~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~ 316 (571)
+.+++.|+++++.+..+. +..+..+++|++|+|++|.+..++. .|.++++|++|+|++|.++.++. .++.+++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLP--AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEEC--THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcC--HHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 458999999999776654 4457889999999999999998764 89999999999999999998855 5799999999
Q ss_pred EEccCCCCCCCchh-hcCCCCCCEEEccCCCCCCCch-hhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCC---
Q 008287 317 LDLRGNQISALPVA-LSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYN--- 391 (571)
Q Consensus 317 L~Ls~n~i~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n--- 391 (571)
|+|++|.++.+|.. ++.+++|++|++++|.+..++. .++.+++|+.|++++|.+..++ +..+++|+.|++++|
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc
Confidence 99999999999875 5899999999999999997654 6899999999999999998764 334455555555554
Q ss_pred ----------------CCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCC-chhhhcCCCCcE
Q 008287 392 ----------------RLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESV-PESLCFATTLVK 454 (571)
Q Consensus 392 ----------------~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i-~~~l~~~~~L~~ 454 (571)
.+..++..+ .++|+.|+|++|.+.+. ..+..+++|++|+|++|.++.+ |..+..+++|+.
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred cccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 444333322 25788899999988875 6788899999999999999966 678889999999
Q ss_pred EEccCCccCCCccchhccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCCCC
Q 008287 455 MNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPP 514 (571)
Q Consensus 455 L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 514 (571)
|+|++| .+..+|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|++...+
T Consensus 283 L~Ls~N--~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 283 LYISNN--RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp EECTTS--CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred EECCCC--CCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC
Confidence 999998 5667888888899999999999999999998999999999999999987654
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.1e-27 Score=273.84 Aligned_cols=280 Identities=26% Similarity=0.453 Sum_probs=219.3
Q ss_pred ccCCCCCcEEEecCCCCCCccccccc-cCCCCCCCEEEeeCCCCC-cccchhcC--------------------------
Q 008287 236 VSSKKGTRDLNLQNKLMDNIEWLPDS-IGKLSSLVSLDLSENRIV-AVPATIGG-------------------------- 287 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~~~l~~~-~~~l~~L~~L~Ls~n~i~-~l~~~l~~-------------------------- 287 (571)
+..+++|+.|++++|.+.+ .+|.. +..+++|++|++++|.+. .+|..+.+
T Consensus 314 ~~~l~~L~~L~L~~n~l~~--~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 314 FGSCSLLESLALSSNNFSG--ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391 (768)
T ss_dssp GGGCTTCCEEECCSSEEEE--ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred HhcCCCccEEECCCCcccC--cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence 3455677777777775542 23433 666666666666666654 33333322
Q ss_pred -CCCccEEEcccCCCC-CcchhhcCCCCccEEEccCCCCC-CCchhhcCCCCCCEEEccCCCCC-CCchhhcCCcCCcEE
Q 008287 288 -LSSLKKLDLHANRII-ELPDSIGDLLSLVYLDLRGNQIS-ALPVALSRLVRLEELDLGSNNLS-SLPDSIGSLISLKKL 363 (571)
Q Consensus 288 -l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n~i~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 363 (571)
+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 456777777777666 56777888889999999998887 56778888899999999999888 678888889999999
Q ss_pred eccCCCCC-CCccccCCCCCCcEEEccCCCCC-CCccccccCCccceeecccccCCc-CccccCCCCCccEEEecCCCCC
Q 008287 364 IVETNDLE-ELPHTIGQCSSLRELRVDYNRLK-ALPEAVGKIHTLEVLSVRYNNIKQ-LPTTMSSLSSLRELDVSFNELE 440 (571)
Q Consensus 364 ~L~~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~L~~n~i~~-lp~~l~~l~~L~~L~Ls~n~l~ 440 (571)
++++|.+. .+|..+..+++|+.|++++|+++ .+|..+..+++|++|+|++|.+.+ +|..+..+++|++|++++|.++
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 99999888 56778889999999999999988 678888899999999999999885 7888899999999999998776
Q ss_pred -CCchhh----------------------------------------------------------------------hcC
Q 008287 441 -SVPESL----------------------------------------------------------------------CFA 449 (571)
Q Consensus 441 -~i~~~l----------------------------------------------------------------------~~~ 449 (571)
.+|..+ ..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 445432 224
Q ss_pred CCCcEEEccCCccCCCccchhccCCCCccEEecccCCCC-ccchhhcCCCCCcEEEcccCCCCC-CChHHH
Q 008287 450 TTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR-VLPDSFRMLSRLRVLRVQENPLEV-PPRNIV 518 (571)
Q Consensus 450 ~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-~~~~~~ 518 (571)
++|+.|++++|... +.+|..++.++.|+.|+|++|+++ .+|..++.+++|+.|+|++|.++. .|..+.
T Consensus 632 ~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 632 GSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp BCCCEEECCSSCCB-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccccEEECcCCccc-ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 67889999998533 578999999999999999999998 789999999999999999999974 444443
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.7e-27 Score=256.35 Aligned_cols=272 Identities=21% Similarity=0.329 Sum_probs=201.7
Q ss_pred ccCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCC--cchhhcCCCC
Q 008287 236 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIE--LPDSIGDLLS 313 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~--lp~~l~~l~~ 313 (571)
+..+++|+.|+|++|.+.++. |..|..+++|++|+|++|.+..+|.. .+++|++|+|++|.++. +|..++.+++
T Consensus 41 ~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 41 ILSLSKLRILIISHNRIQYLD--ISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116 (520)
T ss_dssp HTTCTTCCEEECCSSCCCEEE--GGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred ccccccccEEecCCCccCCcC--hHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCc
Confidence 456778999999999877643 67888999999999999999988775 78999999999999885 5678899999
Q ss_pred ccEEEccCCCCCCCchhhcCCCCC--CEEEccCCCC--C-CCchhhcCC-------------------------------
Q 008287 314 LVYLDLRGNQISALPVALSRLVRL--EELDLGSNNL--S-SLPDSIGSL------------------------------- 357 (571)
Q Consensus 314 L~~L~Ls~n~i~~lp~~l~~l~~L--~~L~Ls~n~l--~-~lp~~l~~l------------------------------- 357 (571)
|++|++++|.+.. ..+..+++| +.|++++|.+ . ..|..+..+
T Consensus 117 L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~ 194 (520)
T 2z7x_B 117 LKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194 (520)
T ss_dssp CCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEE
T ss_pred ceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceee
Confidence 9999999998876 345666666 8888888776 2 222222221
Q ss_pred ----------------------------------------------------cCCcEEeccCCCCC-CCcccc-------
Q 008287 358 ----------------------------------------------------ISLKKLIVETNDLE-ELPHTI------- 377 (571)
Q Consensus 358 ----------------------------------------------------~~L~~L~L~~n~l~-~l~~~l------- 377 (571)
++|++|++++|.+. .+|..+
T Consensus 195 L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~ 274 (520)
T 2z7x_B 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274 (520)
T ss_dssp CCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCC
T ss_pred ccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccccc
Confidence 14555555555544 344433
Q ss_pred ----------------------------------------------CCCCCCcEEEccCCCCCC-CccccccCCccceee
Q 008287 378 ----------------------------------------------GQCSSLRELRVDYNRLKA-LPEAVGKIHTLEVLS 410 (571)
Q Consensus 378 ----------------------------------------------~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~ 410 (571)
..+++|++|++++|+++. +|..+..+++|++|+
T Consensus 275 l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 354 (520)
T 2z7x_B 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354 (520)
T ss_dssp CCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEE
T ss_pred CceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEE
Confidence 456677777777777765 566677777788888
Q ss_pred cccccCCc---CccccCCCCCccEEEecCCCCCC-Cchh-hhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccC
Q 008287 411 VRYNNIKQ---LPTTMSSLSSLRELDVSFNELES-VPES-LCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNN 485 (571)
Q Consensus 411 L~~n~i~~---lp~~l~~l~~L~~L~Ls~n~l~~-i~~~-l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n 485 (571)
+++|.+.+ +|..+..+++|++|+|++|.++. +|.. +..+++|+.|++++|... ..+|..+. ++|+.|+|++|
T Consensus 355 L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~--~~L~~L~Ls~N 431 (520)
T 2z7x_B 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT-DTIFRCLP--PRIKVLDLHSN 431 (520)
T ss_dssp CCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC-GGGGGSCC--TTCCEEECCSS
T ss_pred ccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC-cchhhhhc--ccCCEEECCCC
Confidence 88887775 34567777888888888887776 6654 556778888888877432 23333332 78999999999
Q ss_pred CCCccchhhcCCCCCcEEEcccCCCCCCChH
Q 008287 486 QIRVLPDSFRMLSRLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 486 ~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 516 (571)
+|+.+|..+..+++|+.|+|++|+++..+..
T Consensus 432 ~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 432 KIKSIPKQVVKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp CCCCCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred cccccchhhhcCCCCCEEECCCCcCCccCHH
Confidence 9999999888999999999999999877765
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=2.2e-27 Score=263.85 Aligned_cols=89 Identities=30% Similarity=0.388 Sum_probs=57.9
Q ss_pred ccCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCccc-chhcCCCCccEEEcccCCCC--CcchhhcCCC
Q 008287 236 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRII--ELPDSIGDLL 312 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~-~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~ 312 (571)
+..+++|+.|+|++|.+..+. |..|..+++|++|++++|.+..++ ..+.++++|++|++++|.+. .+|..+++++
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~ 153 (606)
T 3vq2_A 76 WHGLHHLSNLILTGNPIQSFS--PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153 (606)
T ss_dssp TTTCTTCCEEECTTCCCCCCC--TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT
T ss_pred hhchhhcCEeECCCCcccccC--hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC
Confidence 345566777777766655532 556666777777777777766654 45666777777777777666 3566677777
Q ss_pred CccEEEccCCCCCC
Q 008287 313 SLVYLDLRGNQISA 326 (571)
Q Consensus 313 ~L~~L~Ls~n~i~~ 326 (571)
+|++|++++|.++.
T Consensus 154 ~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 154 NLVHVDLSYNYIQT 167 (606)
T ss_dssp TCCEEECCSSCCCE
T ss_pred CCCEEEccCCccee
Confidence 77777777766553
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.5e-26 Score=255.10 Aligned_cols=268 Identities=25% Similarity=0.334 Sum_probs=205.6
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcc-cchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEE
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLD 318 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 318 (571)
++++.|++++|.+..+. +..+..+++|++|+|++|.++.+ |..|.++++|++|+|++|.++.+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELR--MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCC--GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccC--hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEE
Confidence 68999999999888764 57899999999999999999987 56899999999999999999999876 899999999
Q ss_pred ccCCCCCCCc--hhhcCCCCCCEEEccCCCCCCCchhhcCCcCC--cEEeccCCCC------------------------
Q 008287 319 LRGNQISALP--VALSRLVRLEELDLGSNNLSSLPDSIGSLISL--KKLIVETNDL------------------------ 370 (571)
Q Consensus 319 Ls~n~i~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L--~~L~L~~n~l------------------------ 370 (571)
+++|.++.++ ..+.++++|++|++++|.+... .+..+++| +.|++++|.+
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999999764 7899999999999999988742 22333333 4444444433
Q ss_pred --------------------------------------------------------------------------------
Q 008287 371 -------------------------------------------------------------------------------- 370 (571)
Q Consensus 371 -------------------------------------------------------------------------------- 370 (571)
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence
Q ss_pred ---C-CCcccc-----------------------------------------------------CCCCCCcEEEccCCCC
Q 008287 371 ---E-ELPHTI-----------------------------------------------------GQCSSLRELRVDYNRL 393 (571)
Q Consensus 371 ---~-~l~~~l-----------------------------------------------------~~l~~L~~L~Ls~n~l 393 (571)
. .+|..+ ..+++|++|++++|++
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcc
Confidence 2 333322 4556777777777777
Q ss_pred CC-CccccccCCccceeecccccCCcCc---cccCCCCCccEEEecCCCCCC-Cchh-hhcCCCCcEEEccCCccCCCcc
Q 008287 394 KA-LPEAVGKIHTLEVLSVRYNNIKQLP---TTMSSLSSLRELDVSFNELES-VPES-LCFATTLVKMNIGNNFADLRAL 467 (571)
Q Consensus 394 ~~-l~~~l~~l~~L~~L~L~~n~i~~lp---~~l~~l~~L~~L~Ls~n~l~~-i~~~-l~~~~~L~~L~L~~n~~~l~~l 467 (571)
+. +|..+..+++|++|++++|.+.+++ ..+..+++|++|++++|.++. +|.. +..+++|+.|++++|... +.+
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~ 444 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT-GSV 444 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC-GGG
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC-cch
Confidence 64 5566677777777777777777643 456777777777777777775 6543 456677777777777432 223
Q ss_pred chhccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCCCChH
Q 008287 468 PRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 468 p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 516 (571)
|..+. ++|+.|+|++|+|+.+|..+..+++|+.|+|++|.++..+..
T Consensus 445 ~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 445 FRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp GSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred hhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence 33222 689999999999999998888999999999999999877765
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.6e-27 Score=241.06 Aligned_cols=231 Identities=25% Similarity=0.342 Sum_probs=112.1
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEc
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 319 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 319 (571)
.+++.|+|+++.+. .+|..+..+++|++|+|++|.+..+|..+.++++|++|+|++|.++.+|..++.+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP---QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS---SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch---hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 34555555555443 233444445555555555555554444444455555555555544444444444445555554
Q ss_pred cCCCC-CCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCcc
Q 008287 320 RGNQI-SALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPE 398 (571)
Q Consensus 320 s~n~i-~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~ 398 (571)
++|++ ..+|..+.. . .++..+..+++|++|++++|.++.+|..+..+++|++|++++|+++.+|.
T Consensus 158 ~~n~~~~~~p~~~~~------~--------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~ 223 (328)
T 4fcg_A 158 RACPELTELPEPLAS------T--------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP 223 (328)
T ss_dssp EEETTCCCCCSCSEE------E--------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG
T ss_pred CCCCCccccChhHhh------c--------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch
Confidence 44322 233322221 0 00011223445555555555444444444455555555555555554444
Q ss_pred ccccCCccceeecccccCCc-CccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCc
Q 008287 399 AVGKIHTLEVLSVRYNNIKQ-LPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEML 477 (571)
Q Consensus 399 ~l~~l~~L~~L~L~~n~i~~-lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L 477 (571)
.+..+++|++|++++|.+.+ +|..+..+++|++|+|++|.+. +.+|..++.+++|
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~------------------------~~~p~~~~~l~~L 279 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL------------------------LTLPLDIHRLTQL 279 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC------------------------CBCCTTGGGCTTC
T ss_pred hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch------------------------hhcchhhhcCCCC
Confidence 44455555555555544333 3444455555555555554332 3344455566666
Q ss_pred cEEecccCC-CCccchhhcCCCCCcEEEcccCCCC
Q 008287 478 EELDISNNQ-IRVLPDSFRMLSRLRVLRVQENPLE 511 (571)
Q Consensus 478 ~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~N~l~ 511 (571)
+.|+|++|+ ++.+|+.+..+++|+.+++..+.+.
T Consensus 280 ~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 666666653 3356666666666666666655554
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.3e-27 Score=239.88 Aligned_cols=243 Identities=23% Similarity=0.317 Sum_probs=137.3
Q ss_pred EEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchh-hcCCCCccEEEccCCCCCCC---chhhcCCCCCCEEEccCC
Q 008287 270 SLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDS-IGDLLSLVYLDLRGNQISAL---PVALSRLVRLEELDLGSN 345 (571)
Q Consensus 270 ~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~n~i~~l---p~~l~~l~~L~~L~Ls~n 345 (571)
.++++++.++.+|..+ .++|++|+|++|.++.+|.. +..+++|++|++++|.++.+ +..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 3444444444444322 13444444444444444332 34444455555554444432 233444445555555555
Q ss_pred CCCCCchhhcCCcCCcEEeccCCCCCCCcc--ccCCCCCCcEEEccCCCCCC-CccccccCCccceeecccccCCc--Cc
Q 008287 346 NLSSLPDSIGSLISLKKLIVETNDLEELPH--TIGQCSSLRELRVDYNRLKA-LPEAVGKIHTLEVLSVRYNNIKQ--LP 420 (571)
Q Consensus 346 ~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~L~~n~i~~--lp 420 (571)
.+..+|..+..+++|++|++++|.+..++. .+..+++|++|++++|.+.. .+..+..+++|++|++++|.+.+ +|
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 444444444455555555555555444432 44555555555555555542 23344555556666666655554 45
Q ss_pred cccCCCCCccEEEecCCCCCCC-chhhhcCCCCcEEEccCCccCCCccc-hhccCCCCccEEecccCCCCcc-chhhcCC
Q 008287 421 TTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRALP-RSIGNLEMLEELDISNNQIRVL-PDSFRML 497 (571)
Q Consensus 421 ~~l~~l~~L~~L~Ls~n~l~~i-~~~l~~~~~L~~L~L~~n~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l 497 (571)
..+..+++|++|+|++|.++.+ +..+..+++|+.|++++|. +..++ ..+..+++|+.|+|++|+|+.. |..+..+
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN--FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc--cCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 5555566666666666666544 3445555666666666653 22222 3577899999999999999865 5678888
Q ss_pred C-CCcEEEcccCCCCCCChH
Q 008287 498 S-RLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 498 ~-~L~~L~L~~N~l~~~~~~ 516 (571)
+ +|+.|+|++|+++|.|..
T Consensus 247 ~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 247 PSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CTTCCEEECTTCCEECSGGG
T ss_pred hccCCEEEccCCCeecccCh
Confidence 5 999999999999998864
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=7.2e-27 Score=257.36 Aligned_cols=319 Identities=26% Similarity=0.293 Sum_probs=223.2
Q ss_pred hcccccccCCccccccccccCcccccccccccccCCCCCccchHHhhhhhccccCCCCCcEEEecCCCCCCccccccccC
Q 008287 184 KAKSSFYSDGMGVVGTVVSSTPQIHDSTLKSGAVSGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIG 263 (571)
Q Consensus 184 ~~~~~~~~~g~~~i~~~~~~~~~i~d~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~L~L~~~~~~~~~~l~~~~~ 263 (571)
...+.|...++..++..+.. .+..+.+ .+.....+. ...+..+++|+.|+|++|.+..+. +..|.
T Consensus 9 ~~~~~c~~~~l~~ip~~l~~--~l~~L~L-----s~n~l~~~~------~~~~~~l~~L~~L~Ls~n~i~~i~--~~~~~ 73 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLPF--STKNLDL-----SFNPLRHLG------SYSFFSFPELQVLDLSRCEIQTIE--DGAYQ 73 (570)
T ss_dssp TTEEECCSSCCSSCCSSSCS--SCCEEEC-----CSCCCCEEC------TTTTTTCSSCCEEECTTCCCCEEC--TTTTT
T ss_pred CcEEEeCCCCccccCCCccc--cccEEEc-----cCCccCccC------hhHhhCCCCceEEECCCCcCCccC--ccccc
Confidence 44577888888777754432 2222222 222211111 113567889999999999877654 56789
Q ss_pred CCCCCCEEEeeCCCCCccc-chhcCCCCccEEEcccCCCCCcch-hhcCCCCccEEEccCCCCCC--CchhhcCCCCCCE
Q 008287 264 KLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISA--LPVALSRLVRLEE 339 (571)
Q Consensus 264 ~l~~L~~L~Ls~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~i~~--lp~~l~~l~~L~~ 339 (571)
.+++|++|+|++|.+..++ ..|.++++|++|++++|.++.++. .++.+++|++|++++|.+.. +|..++++++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence 9999999999999999875 589999999999999999998865 68999999999999999986 6889999999999
Q ss_pred EEccCCCCCCCc-hhhc---------------------------------------------------------------
Q 008287 340 LDLGSNNLSSLP-DSIG--------------------------------------------------------------- 355 (571)
Q Consensus 340 L~Ls~n~l~~lp-~~l~--------------------------------------------------------------- 355 (571)
|++++|.+..++ ..++
T Consensus 154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 233 (570)
T 2z63_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233 (570)
T ss_dssp EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeec
Confidence 999999776432 1121
Q ss_pred ----------------------------------------------CCcCCcEEeccCCCCCCCcccc------------
Q 008287 356 ----------------------------------------------SLISLKKLIVETNDLEELPHTI------------ 377 (571)
Q Consensus 356 ----------------------------------------------~l~~L~~L~L~~n~l~~l~~~l------------ 377 (571)
.+++|+.|++.+|.+..+|..+
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~ 313 (570)
T 2z63_A 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313 (570)
T ss_dssp EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEES
T ss_pred cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeecc
Confidence 1234444444444443333322
Q ss_pred ------------------------------CCCCCCcEEEccCCCCCC--------------------------Cccccc
Q 008287 378 ------------------------------GQCSSLRELRVDYNRLKA--------------------------LPEAVG 401 (571)
Q Consensus 378 ------------------------------~~l~~L~~L~Ls~n~l~~--------------------------l~~~l~ 401 (571)
..+++|++|++++|.++. ++..+.
T Consensus 314 n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 393 (570)
T 2z63_A 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393 (570)
T ss_dssp CBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEE
T ss_pred CcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccccc
Confidence 123444444444444432 222234
Q ss_pred cCCccceeecccccCCcCc--cccCCCCCccEEEecCCCCCC-CchhhhcCCCCcEEEccCCccCCCccchhccCCCCcc
Q 008287 402 KIHTLEVLSVRYNNIKQLP--TTMSSLSSLRELDVSFNELES-VPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLE 478 (571)
Q Consensus 402 ~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~~L~Ls~n~l~~-i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~ 478 (571)
.+++|++|++++|.+.+.+ ..+..+++|++|++++|.+.. .+..+..+++|+.|++++|......+|..+..+++|+
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 4445555555555554432 245666777777777777664 4456677888888888888544346788899999999
Q ss_pred EEecccCCCCcc-chhhcCCCCCcEEEcccCCCCCCChHH
Q 008287 479 ELDISNNQIRVL-PDSFRMLSRLRVLRVQENPLEVPPRNI 517 (571)
Q Consensus 479 ~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~ 517 (571)
.|+|++|+++.+ |..+..+++|+.|+|++|.++..+...
T Consensus 474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 513 (570)
T 2z63_A 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513 (570)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHH
Confidence 999999999977 778999999999999999998776543
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6.4e-27 Score=240.64 Aligned_cols=219 Identities=24% Similarity=0.377 Sum_probs=148.9
Q ss_pred CCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccC
Q 008287 265 LSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGS 344 (571)
Q Consensus 265 l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~ 344 (571)
.++++.|+|++|.+..+|..+.++++|++|+|++|.++.+|..++.+++|++|+|++|.++.+|..+.++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 46788888888888888777777888888888888888777777788888888888888877777777777788887777
Q ss_pred CCC-CCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCcccc
Q 008287 345 NNL-SSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTM 423 (571)
Q Consensus 345 n~l-~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l 423 (571)
|++ ..+|..++.. .++..+..+++|++|++++|+++.+|..+..+++|++|+|++|.+.++|..+
T Consensus 160 n~~~~~~p~~~~~~--------------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l 225 (328)
T 4fcg_A 160 CPELTELPEPLAST--------------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI 225 (328)
T ss_dssp ETTCCCCCSCSEEE--------------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGG
T ss_pred CCCccccChhHhhc--------------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhh
Confidence 543 3555433220 0112234455555555555555555555555555555555555555555445
Q ss_pred CCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCC-CccchhhcCCCCCcE
Q 008287 424 SSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQI-RVLPDSFRMLSRLRV 502 (571)
Q Consensus 424 ~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~ 502 (571)
..+++|++|+|++|.+. ..+|..++.+++|+.|+|++|++ ..+|..+..+++|+.
T Consensus 226 ~~l~~L~~L~Ls~n~~~------------------------~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTAL------------------------RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp GGCTTCCEEECTTCTTC------------------------CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred ccCCCCCEEECcCCcch------------------------hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 55555555555554432 44567788999999999999855 478989999999999
Q ss_pred EEcccCCCC-CCChHHHhcC
Q 008287 503 LRVQENPLE-VPPRNIVEMG 521 (571)
Q Consensus 503 L~L~~N~l~-~~~~~~~~~~ 521 (571)
|+|++|++. ..|..+..+.
T Consensus 282 L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 282 LDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp EECTTCTTCCCCCGGGGGSC
T ss_pred EeCCCCCchhhccHHHhhcc
Confidence 999998874 4455554433
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=4.2e-26 Score=245.10 Aligned_cols=255 Identities=20% Similarity=0.277 Sum_probs=150.5
Q ss_pred cCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccE
Q 008287 237 SSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVY 316 (571)
Q Consensus 237 ~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 316 (571)
..+++|+.|++++|.+.++ + +..+++|++|++++|.+..++ +.++++|++|++++|.++.++ ++.+++|++
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~---~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTL---D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY 131 (457)
T ss_dssp GGCTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cccCCCCEEEccCCcCCeE---c--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence 3455666666666655553 2 556666666666666666654 566666666666666666653 566666666
Q ss_pred EEccCCCCCCCchhhcCCCCCCEEEccCC-CCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCC
Q 008287 317 LDLRGNQISALPVALSRLVRLEELDLGSN-NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKA 395 (571)
Q Consensus 317 L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~ 395 (571)
|++++|.++.++ ++.+++|++|++++| .+..+ .++.+++|+.|++++|.++.+| +..+++|+.|++++|+++.
T Consensus 132 L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 132 LNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp EECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSC
T ss_pred EECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCe
Confidence 666666666553 455555555555555 23333 2445555555555555555543 4445555555555555554
Q ss_pred CccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCch------------------------------h
Q 008287 396 LPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPE------------------------------S 445 (571)
Q Consensus 396 l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~------------------------------~ 445 (571)
++ +..+++|++|++++|.+.++| +..+++|++|++++|.++.++. .
T Consensus 206 ~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 206 LD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ 281 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred ec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc
Confidence 42 444455555555555555543 4444555555555554443321 0
Q ss_pred hhcCCCCcEEEccCCccCCCccch--------hccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCCC
Q 008287 446 LCFATTLVKMNIGNNFADLRALPR--------SIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVP 513 (571)
Q Consensus 446 l~~~~~L~~L~L~~n~~~l~~lp~--------~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 513 (571)
+..+++|+.|++++|.. ++.+|. .+..+++|+.|++++|+|+.++ +..+++|+.|++++|+++..
T Consensus 282 ~~~l~~L~~L~Ls~n~~-l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 282 AEGCRKIKELDVTHNTQ-LYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp CTTCTTCCCCCCTTCTT-CCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBC
T ss_pred ccccccCCEEECCCCcc-cceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCc
Confidence 12346666677766631 122221 2566788999999999999874 88999999999999999764
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.4e-26 Score=244.61 Aligned_cols=244 Identities=24% Similarity=0.394 Sum_probs=157.7
Q ss_pred cEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCccc-chhcCCCCccEEEcccCCCCCcc-hhhcCCCCccEEEcc
Q 008287 243 RDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLR 320 (571)
Q Consensus 243 ~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls 320 (571)
+.++..+..+.. +|..+. ++++.|+|++|.+..++ ..|.++++|++|+|++|.+..++ ..+..+++|++|+|+
T Consensus 46 ~~v~c~~~~l~~---iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 46 SKVICVRKNLRE---VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp CEEECCSCCCSS---CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CEEEeCCCCcCc---CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 445555543333 344333 56667777777666553 45666667777777776666553 456666667777777
Q ss_pred CCCCCCCch-hhcCCCCCCEEEccCCCCCCCch-hhcCCcCCcEEeccCC-CCCCCcc-ccCCCCCCcEEEccCCCCCCC
Q 008287 321 GNQISALPV-ALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETN-DLEELPH-TIGQCSSLRELRVDYNRLKAL 396 (571)
Q Consensus 321 ~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n-~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l 396 (571)
+|+++.++. .+..+++|++|++++|.+..++. .+..+++|++|++++| .+..++. .+..+++|++|++++|+++.+
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 766666654 46666666666666666665543 3556666666666653 3334433 455566666666666666655
Q ss_pred ccccccCCccceeecccccCCcC-ccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCC
Q 008287 397 PEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLE 475 (571)
Q Consensus 397 ~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~ 475 (571)
|. +..+++|+.|+|++|.+..+ +..+.++++|++|+|++|.++.++ +..+..++
T Consensus 201 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------------------~~~~~~l~ 255 (440)
T 3zyj_A 201 PN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE------------------------RNAFDNLQ 255 (440)
T ss_dssp CC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC------------------------TTSSTTCT
T ss_pred cc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC------------------------hhhhcCCC
Confidence 43 45555566666666655553 345555555666666555554432 34678889
Q ss_pred CccEEecccCCCCccch-hhcCCCCCcEEEcccCCCCCCChH
Q 008287 476 MLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 476 ~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~ 516 (571)
+|+.|+|++|+|+.+|. .|..+++|+.|+|++|||.|+|..
T Consensus 256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 99999999999998875 678999999999999999999974
No 42
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6.8e-26 Score=251.35 Aligned_cols=239 Identities=32% Similarity=0.402 Sum_probs=209.9
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEc
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 319 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 319 (571)
++|+.|+|++|.+..+ |. .+++|++|+|++|.++.+|. .+++|++|+|++|.++.+|. .+++|++|++
T Consensus 61 ~~L~~L~L~~N~l~~l---p~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTSL---PA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSCC---CC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCCC---CC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEEC
Confidence 6899999999987754 43 57899999999999998886 67899999999999998877 6789999999
Q ss_pred cCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccc
Q 008287 320 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA 399 (571)
Q Consensus 320 s~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~ 399 (571)
++|+++.+|.. +++|++|++++|.++.+|. .+.+|+.|++++|.++.+| ..+++|+.|++++|+++.+|..
T Consensus 129 ~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~ 199 (622)
T 3g06_A 129 FGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL 199 (622)
T ss_dssp CSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC
T ss_pred CCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc
Confidence 99999998864 4889999999999998875 3578999999999999988 5678999999999999988764
Q ss_pred cccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccE
Q 008287 400 VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEE 479 (571)
Q Consensus 400 l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~ 479 (571)
+++|+.|++++|.+..+|.. +++|++|+|++|.++.+| ..+++|+.|++++| .+..+|. .+++|+.
T Consensus 200 ---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N--~L~~lp~---~~~~L~~ 265 (622)
T 3g06_A 200 ---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGN--RLTSLPM---LPSGLLS 265 (622)
T ss_dssp ---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS--CCSCCCC---CCTTCCE
T ss_pred ---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCC--CCCcCCc---ccccCcE
Confidence 47899999999999998853 478999999999999988 55689999999999 4567775 6789999
Q ss_pred EecccCCCCccchhhcCCCCCcEEEcccCCCCCC
Q 008287 480 LDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVP 513 (571)
Q Consensus 480 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 513 (571)
|+|++|+|+.+|..+..+++|+.|+|++|+++..
T Consensus 266 L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 266 LSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp EECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred EeCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 9999999999999999999999999999999754
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=7.3e-27 Score=256.36 Aligned_cols=275 Identities=24% Similarity=0.312 Sum_probs=189.4
Q ss_pred ccCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCC--cchhhcCCC
Q 008287 236 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIE--LPDSIGDLL 312 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~--lp~~l~~l~ 312 (571)
+..+++|+.|++++|.+..+. |..|..+++|++|++++|.+..++. .+.++++|++|+|++|.++. +|..++.++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIE--GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred hhcCCcccEEECCCCCcCccC--hhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 556778888888888776643 5678888888888888888887765 48888888888888888874 356788888
Q ss_pred CccEEEccCCC-CCCCc-hhhcCCCCCCEEEccCCCCCC-CchhhcCCcCCcEEeccCCCCCCCcccc-CCCCCCcEEEc
Q 008287 313 SLVYLDLRGNQ-ISALP-VALSRLVRLEELDLGSNNLSS-LPDSIGSLISLKKLIVETNDLEELPHTI-GQCSSLRELRV 388 (571)
Q Consensus 313 ~L~~L~Ls~n~-i~~lp-~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~l~~~l-~~l~~L~~L~L 388 (571)
+|++|++++|. +..+| ..+.++++|++|++++|.+.. +|..++.+++|++|++++|.+..++..+ ..+++|++|++
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence 88888888887 56665 378888888888888888884 5677888888888888888877766543 46888999999
Q ss_pred cCCCCCCCc---cc-ccc--------------------------------------------------------------
Q 008287 389 DYNRLKALP---EA-VGK-------------------------------------------------------------- 402 (571)
Q Consensus 389 s~n~l~~l~---~~-l~~-------------------------------------------------------------- 402 (571)
++|+++.++ .. ...
T Consensus 204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 888876531 00 000
Q ss_pred -------------------------CCccceeecccccCCcCcccc-CCCCCccEEEecCCCCCCC-c---hhhhcCCCC
Q 008287 403 -------------------------IHTLEVLSVRYNNIKQLPTTM-SSLSSLRELDVSFNELESV-P---ESLCFATTL 452 (571)
Q Consensus 403 -------------------------l~~L~~L~L~~n~i~~lp~~l-~~l~~L~~L~Ls~n~l~~i-~---~~l~~~~~L 452 (571)
..+|+.|++++|.+..+|..+ ..+++|++|+|++|.+++. | ..+..+++|
T Consensus 284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L 363 (549)
T 2z81_A 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363 (549)
T ss_dssp CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC
T ss_pred ccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccC
Confidence 123444444444444454433 3466666666666666532 2 224455666
Q ss_pred cEEEccCCccCCCccc---hhccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCCCC
Q 008287 453 VKMNIGNNFADLRALP---RSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPP 514 (571)
Q Consensus 453 ~~L~L~~n~~~l~~lp---~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 514 (571)
+.|++++| .+..++ ..+..+++|++|+|++|+|+.+|..+..+++|+.|++++|.++..+
T Consensus 364 ~~L~Ls~N--~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~ 426 (549)
T 2z81_A 364 QTLVLSQN--HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVK 426 (549)
T ss_dssp CEEECTTS--CCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCC
T ss_pred cEEEccCC--cccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccccc
Confidence 66666666 233333 2356667777777777777777666666666777777666665433
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=5.3e-26 Score=243.98 Aligned_cols=227 Identities=27% Similarity=0.378 Sum_probs=141.3
Q ss_pred CCCCEEEeeCCCCCcc-cchhcCCCCccEEEcccCCCCCcc-hhhcCCCCccEEEccCCCCCCCch-hhcCCCCCCEEEc
Q 008287 266 SSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDL 342 (571)
Q Consensus 266 ~~L~~L~Ls~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~i~~lp~-~l~~l~~L~~L~L 342 (571)
+++++|+|++|.+..+ +..|.++++|++|+|++|.++.++ ..+..+++|++|+|++|.++.+|. .+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4566666666666655 335666666666666666666543 455666666666666666665554 3555666666666
Q ss_pred cCCCCCCCch-hhcCCcCCcEEeccC-CCCCCCcc-ccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcC
Q 008287 343 GSNNLSSLPD-SIGSLISLKKLIVET-NDLEELPH-TIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQL 419 (571)
Q Consensus 343 s~n~l~~lp~-~l~~l~~L~~L~L~~-n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~l 419 (571)
++|.+..++. .+..+++|+.|++++ +.+..++. .+..+++|++|++++|+++.+|. +..+++|++|+|++|.+.++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCccc
Confidence 6666665543 355556666666655 23333332 34555555555555555555532 44445555555555555543
Q ss_pred -ccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccch-hhcCC
Q 008287 420 -PTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRML 497 (571)
Q Consensus 420 -p~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l 497 (571)
|..+.++++|++|+|++|.++.+ .+..+..+++|+.|+|++|+|+.+|. .+..+
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLI------------------------ERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEE------------------------CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred CcccccCccCCCEEEeCCCcCceE------------------------CHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 33445555555555555554433 24467889999999999999998875 67889
Q ss_pred CCCcEEEcccCCCCCCChHH
Q 008287 498 SRLRVLRVQENPLEVPPRNI 517 (571)
Q Consensus 498 ~~L~~L~L~~N~l~~~~~~~ 517 (571)
++|+.|+|++|||.|+|...
T Consensus 290 ~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp TTCCEEECCSSCEECSTTTH
T ss_pred cCCCEEEccCCCcCCCCCch
Confidence 99999999999999999743
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2.6e-25 Score=238.87 Aligned_cols=254 Identities=22% Similarity=0.301 Sum_probs=211.6
Q ss_pred CCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEE
Q 008287 238 SKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYL 317 (571)
Q Consensus 238 ~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 317 (571)
.+++++.|++++|.+.++ | .+..+++|++|++++|.+..++ +.++++|++|++++|.++.++ ++.+++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~---~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM---T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCC---T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccC---h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 456899999999987764 4 6889999999999999999986 889999999999999999885 8899999999
Q ss_pred EccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCC-CCCCCccccCCCCCCcEEEccCCCCCCC
Q 008287 318 DLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETN-DLEELPHTIGQCSSLRELRVDYNRLKAL 396 (571)
Q Consensus 318 ~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~l~~~l~~l~~L~~L~Ls~n~l~~l 396 (571)
++++|.++.++ ++.+++|++|++++|.++.++ ++.+++|+.|++++| .+..+ .+..+++|++|++++|+++.+
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 99999999986 889999999999999999885 889999999999999 45555 578899999999999999998
Q ss_pred ccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccch-h-----
Q 008287 397 PEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPR-S----- 470 (571)
Q Consensus 397 ~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~-~----- 470 (571)
| +..+++|+.|++++|.+.+++ +..+++|++|++++|.++.+| +..+++|+.|++++|.. ..+|. .
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l--~~~~~~~l~~L~ 257 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPL--TELDVSTLSKLT 257 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCC--SCCCCTTCTTCC
T ss_pred c--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcC--CCcCHHHCCCCC
Confidence 7 788999999999999999984 889999999999999999987 78899999999999843 22221 1
Q ss_pred ------------------------ccCCCCccEEecccCC-CCccch--------hhcCCCCCcEEEcccCCCCCC
Q 008287 471 ------------------------IGNLEMLEELDISNNQ-IRVLPD--------SFRMLSRLRVLRVQENPLEVP 513 (571)
Q Consensus 471 ------------------------l~~l~~L~~L~Ls~n~-l~~lp~--------~l~~l~~L~~L~L~~N~l~~~ 513 (571)
++.+++|+.|+|++|. +..+|. .+..+++|+.|++++|.++..
T Consensus 258 ~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l 333 (457)
T 3bz5_A 258 TLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL 333 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC
T ss_pred EEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc
Confidence 1233555555555553 222221 245667888888888888765
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.3e-25 Score=253.02 Aligned_cols=275 Identities=25% Similarity=0.320 Sum_probs=201.0
Q ss_pred CCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCC--cccc-hhc--CCCCccEEEcccCCCCCc-chhhcCC
Q 008287 238 SKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIV--AVPA-TIG--GLSSLKKLDLHANRIIEL-PDSIGDL 311 (571)
Q Consensus 238 ~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~--~l~~-~l~--~l~~L~~L~L~~n~l~~l-p~~l~~l 311 (571)
.+++|+.|++++|.+.++. +..+..+++|++|++++|.+. .++. .+. ..+.|+.|++++|+++.+ |..+..+
T Consensus 327 ~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIK--SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TCTTCCEEECCSCCBCCCC--TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cCCCCCEEECCCCccCCCC--hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 3455555555555554432 344555566666666655432 2221 121 124566666666666654 4567778
Q ss_pred CCccEEEccCCCCCC-Cc-hhhcCCCCCCEEEccCCCCCCCc-hhhcCCcCCcEEeccCCCCC---CCccccCCCCCCcE
Q 008287 312 LSLVYLDLRGNQISA-LP-VALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLE---ELPHTIGQCSSLRE 385 (571)
Q Consensus 312 ~~L~~L~Ls~n~i~~-lp-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~---~l~~~l~~l~~L~~ 385 (571)
++|++|++++|.+.. +| ..+..+++|++|++++|.+..++ ..+..+++|+.|++.+|.+. .+|..+..+++|+.
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 888888888888763 54 46777888888888888777543 45777888888888888765 45778888999999
Q ss_pred EEccCCCCCCCc-cccccCCccceeecccccCCcCcc---------ccCCCCCccEEEecCCCCCCCch-hhhcCCCCcE
Q 008287 386 LRVDYNRLKALP-EAVGKIHTLEVLSVRYNNIKQLPT---------TMSSLSSLRELDVSFNELESVPE-SLCFATTLVK 454 (571)
Q Consensus 386 L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~lp~---------~l~~l~~L~~L~Ls~n~l~~i~~-~l~~~~~L~~ 454 (571)
|++++|+++.++ ..+..+++|++|++++|.+..++. .+.++++|++|+|++|.++.+|. .+..+++|+.
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 999999998776 457888999999999998886532 36888999999999999998886 4678899999
Q ss_pred EEccCCccCCCccchh-ccCCCCccEEecccCCCCccch-hhc-CCCCCcEEEcccCCCCCCChH
Q 008287 455 MNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPD-SFR-MLSRLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 455 L~L~~n~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~-~l~-~l~~L~~L~L~~N~l~~~~~~ 516 (571)
|++++|. +..+|.. +..+++|+.|+|++|+|+.++. .+. .+++|+.|++++|||.|+|..
T Consensus 565 L~Ls~N~--l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 565 IDLGLNN--LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp EECCSSC--CCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred eECCCCC--CCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999884 4566654 5788999999999999998875 455 788999999999999998863
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=2.2e-25 Score=257.29 Aligned_cols=311 Identities=20% Similarity=0.298 Sum_probs=201.4
Q ss_pred cccccccCCccccccccccCcccccccccccccCCCCCccchHHhhhhhccccCCCCCcEEEecCCCC-CCccccccccC
Q 008287 185 AKSSFYSDGMGVVGTVVSSTPQIHDSTLKSGAVSGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLM-DNIEWLPDSIG 263 (571)
Q Consensus 185 ~~~~~~~~g~~~i~~~~~~~~~i~d~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~L~L~~~~~-~~~~~l~~~~~ 263 (571)
..+.|...+...++. .+. .+..+.+....+.+. ....+..+++|+.|+|++|.. ..+. |..|.
T Consensus 7 ~~~dcs~~~L~~vP~-lp~--~l~~LdLs~N~i~~i-----------~~~~~~~l~~L~~LdLs~n~~~~~i~--~~~f~ 70 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-VLN--TTERLLLSFNYIRTV-----------TASSFPFLEQLQLLELGSQYTPLTID--KEAFR 70 (844)
T ss_dssp EEEEESCCCSSCCCS-SCT--TCCEEEEESCCCCEE-----------CSSSCSSCCSCSEEEECTTCCCCEEC--TTTTS
T ss_pred eEEEccCCCCCCCCC-CCC--CcCEEECCCCcCCcc-----------ChhHCcccccCeEEeCCCCCCccccC--HHHhc
Confidence 456777777777775 322 222232222211111 012356778899999998843 2222 67788
Q ss_pred CCCCCCEEEeeCCCCCcc-cchhcCCCCccEEEcccCCCCC-cchh--hcCCCCccEEEccCCCCCCCc--hhhcCCCCC
Q 008287 264 KLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIE-LPDS--IGDLLSLVYLDLRGNQISALP--VALSRLVRL 337 (571)
Q Consensus 264 ~l~~L~~L~Ls~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~-lp~~--l~~l~~L~~L~Ls~n~i~~lp--~~l~~l~~L 337 (571)
.+++|++|+|++|.+..+ |..|.++++|++|+|++|.++. +|.. +..+++|++|+|++|.+..++ ..++++++|
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 999999999999999876 6788999999999999999885 4444 888999999999999988653 478899999
Q ss_pred CEEEccCCCCCCC-chhhcCC--cCCcEEeccCCCCCC-CccccCCCCC------CcEEEccCCCCC-CCccccc-----
Q 008287 338 EELDLGSNNLSSL-PDSIGSL--ISLKKLIVETNDLEE-LPHTIGQCSS------LRELRVDYNRLK-ALPEAVG----- 401 (571)
Q Consensus 338 ~~L~Ls~n~l~~l-p~~l~~l--~~L~~L~L~~n~l~~-l~~~l~~l~~------L~~L~Ls~n~l~-~l~~~l~----- 401 (571)
++|++++|.+..+ +..+..+ ++|+.|++++|.+.. .+..+..+.+ |+.|++++|.++ .++..+.
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 9999999988743 4556555 677777777776653 3344444433 677777766543 1111110
Q ss_pred -------------------------------c--CCccceeecccccCCcC-ccccCCCCCccEEEecCCCCCCC-chhh
Q 008287 402 -------------------------------K--IHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESV-PESL 446 (571)
Q Consensus 402 -------------------------------~--l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~Ls~n~l~~i-~~~l 446 (571)
. .++|+.|++++|.+..+ +..+..+++|+.|+|++|.++.+ +..+
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 0 14566666666666653 34566666677777776666654 3355
Q ss_pred hcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccch-hhcCCCCCcEEEcccCCCCC
Q 008287 447 CFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEV 512 (571)
Q Consensus 447 ~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~ 512 (571)
..+++|+.|++++|... ...|..+..+++|+.|+|++|+|+.++. .|..+++|+.|+|++|.++.
T Consensus 311 ~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp TTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred cCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 56666677776666322 2224556666666666666666665543 46666666666666666553
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=4.2e-25 Score=248.87 Aligned_cols=312 Identities=22% Similarity=0.305 Sum_probs=227.7
Q ss_pred hcccccccCCccccccccccCcccccccccccccCCCCCccchHHhhhhhccccCCCCCcEEEecCCCCCCccccccccC
Q 008287 184 KAKSSFYSDGMGVVGTVVSSTPQIHDSTLKSGAVSGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIG 263 (571)
Q Consensus 184 ~~~~~~~~~g~~~i~~~~~~~~~i~d~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~l~~L~L~~~~~~~~~~l~~~~~ 263 (571)
...+.|...+...++..+. ..+..+.+....+. .+.. ..+..+++|+.|+|++|.+..+. |..+.
T Consensus 6 ~~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~-----~~~~------~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~ 70 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLR-----RLPA------ANFTRYSQLTSLDVGFNTISKLE--PELCQ 70 (680)
T ss_dssp SSEEECCSSCCSSCCSCSC--TTCSEEECCSSCCC-----CCCG------GGGGGGTTCSEEECCSSCCCCCC--TTHHH
T ss_pred CCeeECCCCCccccccccC--CCCcEEECCCCCCC-----CcCH------HHHhCCCcCcEEECCCCccCccC--HHHHh
Confidence 3456777777776664433 22333322222221 1211 12445678999999998877654 67788
Q ss_pred CCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCcc-hhhcCCCCccEEEccCCCCCCCc-hhhcCCCCCCEE
Q 008287 264 KLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGNQISALP-VALSRLVRLEEL 340 (571)
Q Consensus 264 ~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~i~~lp-~~l~~l~~L~~L 340 (571)
.+++|++|+|++|.+..+|. .|.++++|++|+|++|.++.++ ..++.+++|++|++++|.+..++ ..+.++++|++|
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 89999999999999988876 6889999999999999998775 57888999999999999888654 467889999999
Q ss_pred EccCCCCCCCchh-h--cCCcCCcEEeccCCCCCCCcc-ccCC---------------------------CCCCcEEEcc
Q 008287 341 DLGSNNLSSLPDS-I--GSLISLKKLIVETNDLEELPH-TIGQ---------------------------CSSLRELRVD 389 (571)
Q Consensus 341 ~Ls~n~l~~lp~~-l--~~l~~L~~L~L~~n~l~~l~~-~l~~---------------------------l~~L~~L~Ls 389 (571)
++++|.++.++.. + ..+++|+.|++++|.+..++. .+.. .++|+.|+++
T Consensus 151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred EccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence 9999988876543 3 355889999999988876543 2332 2567788888
Q ss_pred CCCCCCC-ccccccCCc--cceeecccccCCcCc-cccCCCCCccEEEecCCCCCCC-chhhhcCCCCcEEEccCCccC-
Q 008287 390 YNRLKAL-PEAVGKIHT--LEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFAD- 463 (571)
Q Consensus 390 ~n~l~~l-~~~l~~l~~--L~~L~L~~n~i~~lp-~~l~~l~~L~~L~Ls~n~l~~i-~~~l~~~~~L~~L~L~~n~~~- 463 (571)
+|.+..+ +..+..+.. |+.|++++|.+..++ ..+..+++|++|++++|.+..+ +..+..+++|+.|++++|...
T Consensus 231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred CCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence 8877744 455666644 999999999988854 6788899999999999988864 457788889999999876322
Q ss_pred ---CCccch----hccCCCCccEEecccCCCCccc-hhhcCCCCCcEEEcccCCC
Q 008287 464 ---LRALPR----SIGNLEMLEELDISNNQIRVLP-DSFRMLSRLRVLRVQENPL 510 (571)
Q Consensus 464 ---l~~lp~----~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~N~l 510 (571)
...+|. .+..+++|++|++++|+++.++ ..|..+++|+.|++++|.+
T Consensus 311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred ccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence 113343 5677888999999988888764 4678888888888887764
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=5e-26 Score=231.11 Aligned_cols=265 Identities=25% Similarity=0.314 Sum_probs=195.4
Q ss_pred cEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCc---chhhcCCCCccEEE
Q 008287 243 RDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIEL---PDSIGDLLSLVYLD 318 (571)
Q Consensus 243 ~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l---p~~l~~l~~L~~L~ 318 (571)
+.++.+++++.. +|..+ .++|++|++++|.+..+|. .|.++++|++|+|++|.++.+ +..+..+++|++|+
T Consensus 10 ~~l~c~~~~l~~---ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTS---VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSS---CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCccc---CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 356666655444 34433 2678888888888888765 467888888888888888754 56667788888888
Q ss_pred ccCCCCCCCchhhcCCCCCCEEEccCCCCCCCch--hhcCCcCCcEEeccCCCCCCC-ccccCCCCCCcEEEccCCCCCC
Q 008287 319 LRGNQISALPVALSRLVRLEELDLGSNNLSSLPD--SIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKA 395 (571)
Q Consensus 319 Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~ 395 (571)
+++|.+..+|..+..+++|++|++++|.+..++. .+..+++|++|++++|.+..+ +..+..+++|++|++++|.+..
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 8888888888778888888888888888887654 577888888888888887744 4567788888888888888874
Q ss_pred --CccccccCCccceeecccccCCcC-ccccCCCCCccEEEecCCCCCCCch-hhhcCCCCcEEEccCCccCCCccchhc
Q 008287 396 --LPEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIGNNFADLRALPRSI 471 (571)
Q Consensus 396 --l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~Ls~n~l~~i~~-~l~~~~~L~~L~L~~n~~~l~~lp~~l 471 (571)
+|..+..+++|++|++++|.+.++ |..+..+++|++|+|++|.++.++. .+..+++|+.|++++|... ...|..+
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~ 243 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQEL 243 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC-BCSSSSC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc-ccCHHHH
Confidence 677788888888888888888875 5677888888888888888887654 5677888888888888433 3345567
Q ss_pred cCCC-CccEEecccCCCCccc---hhhcCCCCCcEEEcccCCCCCC
Q 008287 472 GNLE-MLEELDISNNQIRVLP---DSFRMLSRLRVLRVQENPLEVP 513 (571)
Q Consensus 472 ~~l~-~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~L~~N~l~~~ 513 (571)
..++ +|+.|+|++|.++.-. .....+..++.+.+..+.+.|.
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~ 289 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 289 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEE
T ss_pred HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccC
Confidence 7774 8999999999887432 1122223333444555555553
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.7e-24 Score=232.37 Aligned_cols=241 Identities=30% Similarity=0.388 Sum_probs=172.0
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEc
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 319 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 319 (571)
++++.|++++|.+.+ +| .+..+++|++|++++|.+..+|..+ .+|++|++++|.++.+| .++.+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~---lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK---LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS---CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC---Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEEC
Confidence 578888888886665 44 4778888888888888888776533 47888888888888776 5788888888888
Q ss_pred cCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccc
Q 008287 320 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA 399 (571)
Q Consensus 320 s~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~ 399 (571)
++|.++.+|... ++|++|++++|.+..+|. ++.+++|++|++++|.+..+|.. +++|+.|++++|+++.+|..
T Consensus 203 ~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~ 275 (454)
T 1jl5_A 203 DNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL 275 (454)
T ss_dssp CSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC
T ss_pred CCCcCCcCCCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc
Confidence 888888776432 578888888888888874 77888888888888888877653 46788888888888877654
Q ss_pred cccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccE
Q 008287 400 VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEE 479 (571)
Q Consensus 400 l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~ 479 (571)
+++|++|++++|.+.+++.. .++|++|++++|.++.++. ..++|+.|++++|. +..+|.. +++|+.
T Consensus 276 ---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~~---~~~~L~~L~Ls~N~--l~~lp~~---~~~L~~ 341 (454)
T 1jl5_A 276 ---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLCD---LPPSLEELNVSNNK--LIELPAL---PPRLER 341 (454)
T ss_dssp ---CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEECC---CCTTCCEEECCSSC--CSCCCCC---CTTCCE
T ss_pred ---cCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCcccC---CcCcCCEEECCCCc--ccccccc---CCcCCE
Confidence 36788888888877765432 1456666666666665432 12467777777663 3345433 466777
Q ss_pred EecccCCCCccchhhcCCCCCcEEEcccCCCCC
Q 008287 480 LDISNNQIRVLPDSFRMLSRLRVLRVQENPLEV 512 (571)
Q Consensus 480 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~ 512 (571)
|++++|+++.+|. .+++|+.|++++|+++.
T Consensus 342 L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 342 LIASFNHLAEVPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEECCSSCCSS
T ss_pred EECCCCccccccc---hhhhccEEECCCCCCCc
Confidence 7777777776666 35677777777777665
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1e-24 Score=234.01 Aligned_cols=247 Identities=30% Similarity=0.378 Sum_probs=197.8
Q ss_pred cccCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCc
Q 008287 235 EVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSL 314 (571)
Q Consensus 235 ~~~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L 314 (571)
.+..+++|+.|++++|.+..+ |.. ..+|++|++++|.+..+| .+.++++|++|++++|.++.+|... ++|
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~l---p~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L 217 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKKL---PDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSL 217 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSCC---CCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTC
T ss_pred ccCCCCCCCEEECCCCcCccc---CCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---Ccc
Confidence 467788999999999987764 433 359999999999999988 5899999999999999999886533 589
Q ss_pred cEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCC
Q 008287 315 VYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK 394 (571)
Q Consensus 315 ~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~ 394 (571)
++|++++|.++.+| .++.+++|++|++++|.+..+|.. +++|+.|++++|.+..+|.. +++|++|++++|+++
T Consensus 218 ~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 218 ESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFS 290 (454)
T ss_dssp CEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS
T ss_pred cEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccC
Confidence 99999999999998 589999999999999999988763 47999999999999988764 479999999999998
Q ss_pred CCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCC
Q 008287 395 ALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNL 474 (571)
Q Consensus 395 ~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l 474 (571)
.++.. .++|+.|++++|.+.+++.. .++|++|++++|.++.+|.. +++|+.|++++|. +..+|. .+
T Consensus 291 ~l~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~--l~~lp~---~l 356 (454)
T 1jl5_A 291 GLSEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPAL---PPRLERLIASFNH--LAEVPE---LP 356 (454)
T ss_dssp EESCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC--CSCCCC---CC
T ss_pred cccCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccccccc---CCcCCEEECCCCc--cccccc---hh
Confidence 87643 26899999999999886532 25899999999999998765 5899999999994 557776 57
Q ss_pred CCccEEecccCCCCc---cchhhcCC-------------CCCcEEEcccCCCCC
Q 008287 475 EMLEELDISNNQIRV---LPDSFRML-------------SRLRVLRVQENPLEV 512 (571)
Q Consensus 475 ~~L~~L~Ls~n~l~~---lp~~l~~l-------------~~L~~L~L~~N~l~~ 512 (571)
++|+.|+|++|+++. +|.++..+ ++|+.|++++|+++.
T Consensus 357 ~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 357 QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred hhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 899999999999986 56677766 889999999999975
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=7.1e-27 Score=238.43 Aligned_cols=240 Identities=22% Similarity=0.254 Sum_probs=135.1
Q ss_pred CCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCC--Ccchhhc-------CCCCccEEEccCCCCC-CCchhh--cC
Q 008287 266 SSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRII--ELPDSIG-------DLLSLVYLDLRGNQIS-ALPVAL--SR 333 (571)
Q Consensus 266 ~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~--~lp~~l~-------~l~~L~~L~Ls~n~i~-~lp~~l--~~ 333 (571)
++|+.|++++|.+ .+|..+... |++|+|++|.+. .+|..+. .+++|++|++++|.++ .+|..+ ..
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 3444455555555 444333222 555555555443 2333332 4555555555555554 344433 45
Q ss_pred CCCCCEEEccCCCCCCCchhhcCC-----cCCcEEeccCCCCCCCc-cccCCCCCCcEEEccCCCCCC---Ccccc--cc
Q 008287 334 LVRLEELDLGSNNLSSLPDSIGSL-----ISLKKLIVETNDLEELP-HTIGQCSSLRELRVDYNRLKA---LPEAV--GK 402 (571)
Q Consensus 334 l~~L~~L~Ls~n~l~~lp~~l~~l-----~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~---l~~~l--~~ 402 (571)
+++|++|++++|.++.+|..++.+ ++|++|++++|.+..++ ..+..+++|++|++++|++.. ++..+ ..
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 555555555555555444444443 55555555555555444 445555556666665555432 12222 45
Q ss_pred CCccceeecccccCCcCc----cccCCCCCccEEEecCCCCCCCc--hhhhcCCCCcEEEccCCccCCCccchhccCCCC
Q 008287 403 IHTLEVLSVRYNNIKQLP----TTMSSLSSLRELDVSFNELESVP--ESLCFATTLVKMNIGNNFADLRALPRSIGNLEM 476 (571)
Q Consensus 403 l~~L~~L~L~~n~i~~lp----~~l~~l~~L~~L~Ls~n~l~~i~--~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~ 476 (571)
+++|++|++++|.+..++ ..+..+++|++|+|++|.++..+ ..+..+++|+.|++++|. +..+|..+. ++
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~--l~~ip~~~~--~~ 275 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG--LKQVPKGLP--AK 275 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC--CSSCCSSCC--SE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc--cChhhhhcc--CC
Confidence 556666666666555322 12245566666666666665433 233345666666666663 335565555 78
Q ss_pred ccEEecccCCCCccchhhcCCCCCcEEEcccCCCCCC
Q 008287 477 LEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVP 513 (571)
Q Consensus 477 L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 513 (571)
|+.|+|++|+|+.+|. +..+++|+.|+|++|+++..
T Consensus 276 L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 276 LSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp EEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred ceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCCC
Confidence 9999999999998877 88899999999999998753
No 53
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=6.8e-25 Score=253.25 Aligned_cols=276 Identities=25% Similarity=0.298 Sum_probs=228.5
Q ss_pred CCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCC-CCcc-cchhcCCCCccEEEcccCCCCCc-chhhcCCCCc
Q 008287 238 SKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENR-IVAV-PATIGGLSSLKKLDLHANRIIEL-PDSIGDLLSL 314 (571)
Q Consensus 238 ~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~-i~~l-~~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L 314 (571)
..++++.|+|++|.+..+. +..+..+++|++|+|++|. +..+ |..|.++++|++|+|++|.+..+ |..+..+++|
T Consensus 22 lp~~l~~LdLs~N~i~~i~--~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVT--ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCCEEC--SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcCCccC--hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 3468999999999887654 6789999999999999995 4466 66899999999999999999976 7789999999
Q ss_pred cEEEccCCCCCC-Cchh--hcCCCCCCEEEccCCCCCCCc--hhhcCCcCCcEEeccCCCCCCC-ccccCCC--CCCcEE
Q 008287 315 VYLDLRGNQISA-LPVA--LSRLVRLEELDLGSNNLSSLP--DSIGSLISLKKLIVETNDLEEL-PHTIGQC--SSLREL 386 (571)
Q Consensus 315 ~~L~Ls~n~i~~-lp~~--l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l--~~L~~L 386 (571)
++|+|++|.+.. +|.. +.++++|++|++++|.+..++ ..++.+++|++|++++|.+..+ +..+..+ ++|+.|
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 999999999986 5554 899999999999999998653 5699999999999999999864 5566666 899999
Q ss_pred EccCCCCCC-CccccccCCc------cceeecccccCCc-Cccc------------------------------------
Q 008287 387 RVDYNRLKA-LPEAVGKIHT------LEVLSVRYNNIKQ-LPTT------------------------------------ 422 (571)
Q Consensus 387 ~Ls~n~l~~-l~~~l~~l~~------L~~L~L~~n~i~~-lp~~------------------------------------ 422 (571)
++++|.+.. .+..+..+.+ |+.|++++|.+.. ++..
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 999999874 4455555444 9999999997653 2211
Q ss_pred cCC--CCCccEEEecCCCCCCC-chhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCcc-chhhcCCC
Q 008287 423 MSS--LSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVL-PDSFRMLS 498 (571)
Q Consensus 423 l~~--l~~L~~L~Ls~n~l~~i-~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~ 498 (571)
+.+ .++|++|+|++|.+..+ +..+..+++|+.|++++|... ...|..+..+++|+.|+|++|+++.+ |..+..++
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 111 26899999999999865 456788999999999999533 23356789999999999999999977 66899999
Q ss_pred CCcEEEcccCCCCCCChH
Q 008287 499 RLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 499 ~L~~L~L~~N~l~~~~~~ 516 (571)
+|+.|+|++|.+...+..
T Consensus 339 ~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp TCCEEECCSCCCCCCCSS
T ss_pred CCCEEECCCCCCCccChh
Confidence 999999999999766543
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.3e-25 Score=229.56 Aligned_cols=218 Identities=18% Similarity=0.288 Sum_probs=136.6
Q ss_pred cCCCCccEEEcccCCCCCcc-hhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEe
Q 008287 286 GGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLI 364 (571)
Q Consensus 286 ~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 364 (571)
..+++|++|+|++|.++.++ ..+..+++|++|+|++|.+..++. +..+++|++|++++|.++.++ ..++|++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLH 105 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEE
Confidence 34445555555555555442 345555555555555555554432 555555555555555554433 225566666
Q ss_pred ccCCCCCCCccccCCCCCCcEEEccCCCCCCCc-cccccCCccceeecccccCCcCc-ccc-CCCCCccEEEecCCCCCC
Q 008287 365 VETNDLEELPHTIGQCSSLRELRVDYNRLKALP-EAVGKIHTLEVLSVRYNNIKQLP-TTM-SSLSSLRELDVSFNELES 441 (571)
Q Consensus 365 L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~lp-~~l-~~l~~L~~L~Ls~n~l~~ 441 (571)
+++|.+..++.. .+++|++|++++|+++.++ ..+..+++|++|++++|.+..++ ..+ ..+++|++|+|++|.++.
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 666655544332 2456666666666666553 34555666666666666666642 333 356667777777777666
Q ss_pred CchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCCC
Q 008287 442 VPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVP 513 (571)
Q Consensus 442 i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 513 (571)
++.. ..+++|+.|++++| .+..+|..+..+++|+.|+|++|+|+.+|..+..+++|+.|+|++|++.|.
T Consensus 184 ~~~~-~~l~~L~~L~Ls~N--~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 184 VKGQ-VVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp EECC-CCCTTCCEEECCSS--CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHH
T ss_pred cccc-cccccCCEEECCCC--cCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCc
Confidence 5433 24667777777776 344566667788899999999999998888888899999999999999843
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.9e-26 Score=245.38 Aligned_cols=240 Identities=25% Similarity=0.314 Sum_probs=169.9
Q ss_pred CCCCEEEeeCCCCCccc-chhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccC
Q 008287 266 SSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGS 344 (571)
Q Consensus 266 ~~L~~L~Ls~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~ 344 (571)
++|++|+|++|.+..++ ..|.++++|++|+|++|.++.+++ +..+++|++|+|++|.|+.+|. .++|++|++++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~ 108 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence 37777777777777664 467777777777777777775544 7777777777777777776653 26777777777
Q ss_pred CCCCCCchhhcCCcCCcEEeccCCCCCCC-ccccCCCCCCcEEEccCCCCCCC-ccccc-cCCccceeecccccCCcCcc
Q 008287 345 NNLSSLPDSIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKAL-PEAVG-KIHTLEVLSVRYNNIKQLPT 421 (571)
Q Consensus 345 n~l~~lp~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~-~l~~L~~L~L~~n~i~~lp~ 421 (571)
|.+..++. ..+++|+.|++++|.+..+ |..++.+++|+.|++++|.++.+ |..+. .+++|++|+|++|.+.+++.
T Consensus 109 N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 109 NNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp SCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 77776653 2456777777777777765 44667777777788877777753 34443 67778888888887777643
Q ss_pred ccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCC--ccchhhcCCCC
Q 008287 422 TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR--VLPDSFRMLSR 499 (571)
Q Consensus 422 ~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~ 499 (571)
+..+++|++|+|++|.++.+|..+..+++|+.|++++| .+..+|..+..+++|+.|+|++|.+. .+|.++..++.
T Consensus 187 -~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N--~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 187 -QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN--KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp -CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS--CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred -cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC--cCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 33577788888888887777766777777777777777 34457777777777888888877777 56667777777
Q ss_pred CcEEEcc-------cCCCCCCCh
Q 008287 500 LRVLRVQ-------ENPLEVPPR 515 (571)
Q Consensus 500 L~~L~L~-------~N~l~~~~~ 515 (571)
|+.+++. .+++.|.+.
T Consensus 264 L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 264 VQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp HHHHHHHHHHHHTSSSSCCCSST
T ss_pred CcEEeccccccccCCCcccccCC
Confidence 7777775 666666554
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.6e-24 Score=217.80 Aligned_cols=222 Identities=30% Similarity=0.422 Sum_probs=148.8
Q ss_pred CEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcc-hhhcCCCCccEEEccCCCCCCC-chhhcCCCCCCEEEccCCC
Q 008287 269 VSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGNQISAL-PVALSRLVRLEELDLGSNN 346 (571)
Q Consensus 269 ~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~i~~l-p~~l~~l~~L~~L~Ls~n~ 346 (571)
+.++++++.++.+|..+ .++|++|+|++|.++.++ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 45566666666665432 346666666666666554 3456666666666666666654 4456666666666666665
Q ss_pred -CCCC-chhhcCCcCCcEEeccCCCCCCC-ccccCCCCCCcEEEccCCCCCCCcc-ccccCCccceeecccccCCcCcc-
Q 008287 347 -LSSL-PDSIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKALPE-AVGKIHTLEVLSVRYNNIKQLPT- 421 (571)
Q Consensus 347 -l~~l-p~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~i~~lp~- 421 (571)
+..+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|+++.++. .+..+++|++|++++|.+..++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 5555 34455666666666666666654 3345666666666666666665543 35566666666666666666544
Q ss_pred ccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccch-hhcCCCCC
Q 008287 422 TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRL 500 (571)
Q Consensus 422 ~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L 500 (571)
.+..+++|++|+|++|.++.+ .|..+..+++|+.|+|++|+|+.++. .+..+++|
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHV------------------------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEE------------------------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred HhcCccccCEEECCCCccccc------------------------CHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 366666777777776666543 24567788999999999999998874 68999999
Q ss_pred cEEEcccCCCCCCChH
Q 008287 501 RVLRVQENPLEVPPRN 516 (571)
Q Consensus 501 ~~L~L~~N~l~~~~~~ 516 (571)
+.|+|++|++.|.|..
T Consensus 228 ~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 228 QYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CEEECCSSCEECSGGG
T ss_pred CEEeccCCCccCCCCc
Confidence 9999999999998864
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2.2e-26 Score=235.28 Aligned_cols=237 Identities=24% Similarity=0.305 Sum_probs=176.0
Q ss_pred ccCCCCCCCEEEeeCCCCCccc-chhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCE
Q 008287 261 SIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEE 339 (571)
Q Consensus 261 ~~~~l~~L~~L~Ls~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~ 339 (571)
.+..+++|++|+|++|.+..++ ..+.++++|++|+|++|.++.++. +..+++|++|++++|.++.++ ..++|++
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~ 103 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIET 103 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCE
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCE
Confidence 3445667788888887777664 467777788888888877776544 777778888888888777655 2367788
Q ss_pred EEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCcc-ccCCCCCCcEEEccCCCCCCCc-ccc-ccCCccceeecccccC
Q 008287 340 LDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRLKALP-EAV-GKIHTLEVLSVRYNNI 416 (571)
Q Consensus 340 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~-~~l-~~l~~L~~L~L~~n~i 416 (571)
|++++|.+..++. ..+++|++|++++|.+..++. .+..+++|++|++++|.++.++ ..+ ..+++|++|++++|.+
T Consensus 104 L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 104 LHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp EECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred EECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 8888887776653 235678888888888776644 6677788888888888887543 333 4677888888888888
Q ss_pred CcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCC--ccchhh
Q 008287 417 KQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR--VLPDSF 494 (571)
Q Consensus 417 ~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l 494 (571)
..++.. ..+++|++|+|++|.++.++..+..+++|+.|++++| .+..+|..+..+++|+.|+|++|.+. .+|.++
T Consensus 182 ~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N--~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 182 YDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN--KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp CEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS--CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred cccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCC--cccchhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 877433 3478888888888888888777778888888888888 45567888888889999999999888 567778
Q ss_pred cCCCCCcEEEccc
Q 008287 495 RMLSRLRVLRVQE 507 (571)
Q Consensus 495 ~~l~~L~~L~L~~ 507 (571)
..+++|+.|++.+
T Consensus 259 ~~~~~L~~l~l~~ 271 (317)
T 3o53_A 259 SKNQRVQTVAKQT 271 (317)
T ss_dssp HTCHHHHHHHHHH
T ss_pred hccccceEEECCC
Confidence 8888777777763
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=4.5e-25 Score=228.84 Aligned_cols=248 Identities=22% Similarity=0.348 Sum_probs=213.7
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCccc-chhcCCCCccEEEcccCCCCCcchh-hcCCCCccEE
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDS-IGDLLSLVYL 317 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L 317 (571)
++++.|++++|.+..+. +..+..+++|++|++++|.+..++ ..|.++++|++|+|++|.++.++.. +..+++|++|
T Consensus 52 ~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITYIS--NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcccC--HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 47999999999887654 447899999999999999999874 5799999999999999999998775 8999999999
Q ss_pred EccCCCCCCCch--hhcCCCCCCEEEccCC-CCCCCc-hhhcCCcCCcEEeccCCCCCCC-ccccCCCCCCcEEEccCCC
Q 008287 318 DLRGNQISALPV--ALSRLVRLEELDLGSN-NLSSLP-DSIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNR 392 (571)
Q Consensus 318 ~Ls~n~i~~lp~--~l~~l~~L~~L~Ls~n-~l~~lp-~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~ 392 (571)
++++|+++.+|. .+..+++|++|++++| .+..++ ..+..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 999999999986 6889999999999999 577664 5688999999999999999866 7789999999999999999
Q ss_pred CCCCcccc-ccCCccceeecccccCCcCcc----ccCCCCCccEEEecCCCCCC-----CchhhhcCCCCcEEEccCCcc
Q 008287 393 LKALPEAV-GKIHTLEVLSVRYNNIKQLPT----TMSSLSSLRELDVSFNELES-----VPESLCFATTLVKMNIGNNFA 462 (571)
Q Consensus 393 l~~l~~~l-~~l~~L~~L~L~~n~i~~lp~----~l~~l~~L~~L~Ls~n~l~~-----i~~~l~~~~~L~~L~L~~n~~ 462 (571)
++.++..+ ..+++|+.|++++|.+.+++. .......++.++|+++.+.. +|..+..+++|+.|++++|
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-- 287 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-- 287 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS--
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC--
Confidence 98887543 458999999999999988542 23456788999999998873 6778889999999999999
Q ss_pred CCCccchhc-cCCCCccEEecccCCCCccc
Q 008287 463 DLRALPRSI-GNLEMLEELDISNNQIRVLP 491 (571)
Q Consensus 463 ~l~~lp~~l-~~l~~L~~L~Ls~n~l~~lp 491 (571)
.+..+|..+ +.+++|+.|+|++|.+..-+
T Consensus 288 ~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 288 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 455788774 89999999999999888443
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=5e-25 Score=224.89 Aligned_cols=221 Identities=28% Similarity=0.413 Sum_probs=180.2
Q ss_pred CCCCEEEeeCCCCC---cccchhcCCCCccEEEccc-CCCC-CcchhhcCCCCccEEEccCCCCC-CCchhhcCCCCCCE
Q 008287 266 SSLVSLDLSENRIV---AVPATIGGLSSLKKLDLHA-NRII-ELPDSIGDLLSLVYLDLRGNQIS-ALPVALSRLVRLEE 339 (571)
Q Consensus 266 ~~L~~L~Ls~n~i~---~l~~~l~~l~~L~~L~L~~-n~l~-~lp~~l~~l~~L~~L~Ls~n~i~-~lp~~l~~l~~L~~ 339 (571)
.+++.|+|++|.+. .+|..+.++++|++|+|++ |.+. .+|..++.+++|++|++++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57889999999988 4788889999999999985 7776 67888889999999999999988 67878888899999
Q ss_pred EEccCCCCC-CCchhhcCCcCCcEEeccCCCCC-CCccccCCCC-CCcEEEccCCCCC-CCccccccCCccceeeccccc
Q 008287 340 LDLGSNNLS-SLPDSIGSLISLKKLIVETNDLE-ELPHTIGQCS-SLRELRVDYNRLK-ALPEAVGKIHTLEVLSVRYNN 415 (571)
Q Consensus 340 L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~-~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~L~~n~ 415 (571)
|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..++ +|++|++++|+++ .+|..+..+. |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999998887 67777888888888888888887 6777777777 7888888888776 5666666665 7777777777
Q ss_pred CCc-CccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCC-ccchh
Q 008287 416 IKQ-LPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR-VLPDS 493 (571)
Q Consensus 416 i~~-lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~ 493 (571)
+.+ .|..+..+++|++|+|++|.++..+ ..+..+++|++|+|++|+|+ .+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------------------------~~~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDL-------------------------GKVGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBG-------------------------GGCCCCTTCCEEECCSSCCEECCCGG
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeec-------------------------CcccccCCCCEEECcCCcccCcCChH
Confidence 765 4556677777777777777665332 23567799999999999999 78999
Q ss_pred hcCCCCCcEEEcccCCCCC
Q 008287 494 FRMLSRLRVLRVQENPLEV 512 (571)
Q Consensus 494 l~~l~~L~~L~L~~N~l~~ 512 (571)
+..+++|+.|+|++|+++.
T Consensus 264 l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp GGGCTTCCEEECCSSEEEE
T ss_pred HhcCcCCCEEECcCCcccc
Confidence 9999999999999999973
No 60
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.2e-23 Score=212.50 Aligned_cols=202 Identities=25% Similarity=0.368 Sum_probs=122.7
Q ss_pred CCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCc-hhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEec
Q 008287 287 GLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALP-VALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV 365 (571)
Q Consensus 287 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 365 (571)
++++|+.++++++.++.+|..+. ++|++|++++|.++.++ ..+..+++|++|++++|.++.++.. +.+++|+.|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 33444444444444444433322 34444444444444332 2344444444444444444443322 34444555555
Q ss_pred cCCCCCCCccccCCCCCCcEEEccCCCCCCCc-cccccCCccceeecccccCCcCcc-ccCCCCCccEEEecCCCCCCCc
Q 008287 366 ETNDLEELPHTIGQCSSLRELRVDYNRLKALP-EAVGKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVP 443 (571)
Q Consensus 366 ~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~i~ 443 (571)
++|.+..+|..+..+++|++|++++|+++.++ ..+..+++|++|+|++|.+..+|. .+..+++|++|+|++|.++.+|
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 55555555555555556666666666666554 345566666666666666666543 3466677777777777766554
Q ss_pred hhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCCCCh
Q 008287 444 ESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPR 515 (571)
Q Consensus 444 ~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~ 515 (571)
. ..+..+++|+.|+|++|+|+.+|..+..+++|+.|+|.+|||.|.|.
T Consensus 165 ~------------------------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 165 A------------------------GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp T------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred H------------------------HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCc
Confidence 3 24567899999999999999999999999999999999999999985
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=3.7e-24 Score=215.16 Aligned_cols=213 Identities=27% Similarity=0.404 Sum_probs=162.8
Q ss_pred cEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCccc-chhcCCCCccEEEcccCCCCCc-chhhcCCCCccEEEcc
Q 008287 243 RDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLDLR 320 (571)
Q Consensus 243 ~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls 320 (571)
+.++.+++++..+ |..+ .++|++|++++|.+..++ ..|.++++|++|+|++|.++.+ +..+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~~i---p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAV---PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSC---CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccC---CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 4666666655543 4332 468888888888888775 3678888888888888888866 5677888888888888
Q ss_pred CCC-CCCC-chhhcCCCCCCEEEccCCCCCCC-chhhcCCcCCcEEeccCCCCCCCcc-ccCCCCCCcEEEccCCCCCCC
Q 008287 321 GNQ-ISAL-PVALSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRLKAL 396 (571)
Q Consensus 321 ~n~-i~~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l 396 (571)
+|. +..+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+..++. .+..+++|++|++++|+++.+
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 886 7776 45778888888888888888866 4557788888888888888887765 377888888888888888877
Q ss_pred cc-ccccCCccceeecccccCCcC-ccccCCCCCccEEEecCCCCCCCch-hhhcCCCCcEEEccCC
Q 008287 397 PE-AVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIGNN 460 (571)
Q Consensus 397 ~~-~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~Ls~n~l~~i~~-~l~~~~~L~~L~L~~n 460 (571)
+. .+..+++|++|++++|.+.++ |..+..+++|++|+|++|.++.++. .+..+++|+.|++++|
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 64 477788888888888888875 6778888888888888888887764 3566667777777666
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.3e-25 Score=229.13 Aligned_cols=240 Identities=19% Similarity=0.231 Sum_probs=186.4
Q ss_pred CCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCc--ccchhc-------CCCCccEEEcccCCCC-Ccchhh
Q 008287 239 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVA--VPATIG-------GLSSLKKLDLHANRII-ELPDSI 308 (571)
Q Consensus 239 ~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~--l~~~l~-------~l~~L~~L~L~~n~l~-~lp~~l 308 (571)
.++++.|++++|.+ .+|..+... |+.|+|++|.+.. ++..+. ++++|++|+|++|.++ .+|..+
T Consensus 42 ~~~L~~l~l~~n~l----~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE----ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEECTTHHHHCCTT----CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred CCCceeEeeccccc----ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 34577777888766 245544433 7888888887753 455444 6888999999988887 566665
Q ss_pred --cCCCCccEEEccCCCCCCCchhhcCC-----CCCCEEEccCCCCCCCc-hhhcCCcCCcEEeccCCCCCC---Ccccc
Q 008287 309 --GDLLSLVYLDLRGNQISALPVALSRL-----VRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLEE---LPHTI 377 (571)
Q Consensus 309 --~~l~~L~~L~Ls~n~i~~lp~~l~~l-----~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~---l~~~l 377 (571)
..+++|++|++++|.++.+|..+..+ ++|++|++++|.+..++ ..++.+++|++|++++|.+.. ++..+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 78888999999999888777666665 88999999999888776 668888899999999888653 24444
Q ss_pred --CCCCCCcEEEccCCCCCCCc----cccccCCccceeecccccCCcCc--cccCCCCCccEEEecCCCCCCCchhhhcC
Q 008287 378 --GQCSSLRELRVDYNRLKALP----EAVGKIHTLEVLSVRYNNIKQLP--TTMSSLSSLRELDVSFNELESVPESLCFA 449 (571)
Q Consensus 378 --~~l~~L~~L~Ls~n~l~~l~----~~l~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~ 449 (571)
..+++|++|++++|+++.++ ..+..+++|++|++++|.+.+.+ ..+..+++|++|+|++|.++.+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--
Confidence 78889999999999888543 23356789999999999988854 456678899999999999998888766
Q ss_pred CCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCc
Q 008287 450 TTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRV 489 (571)
Q Consensus 450 ~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 489 (571)
++|+.|++++| .+..+|. +..+++|+.|+|++|+|+.
T Consensus 274 ~~L~~L~Ls~N--~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYN--RLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSS--CCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCC--CCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 88999999998 4556676 8889999999999998875
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.9e-24 Score=232.69 Aligned_cols=217 Identities=18% Similarity=0.283 Sum_probs=192.2
Q ss_pred CCCCccEEEcccCCCCCc-chhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEec
Q 008287 287 GLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV 365 (571)
Q Consensus 287 ~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 365 (571)
.+++|++|+|++|.++.+ |..+..+++|++|+|++|.++.+++ +..+++|++|++++|.++.++. .++|+.|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 344899999999999977 4689999999999999999997664 8999999999999999887663 389999999
Q ss_pred cCCCCCCCccccCCCCCCcEEEccCCCCCCC-ccccccCCccceeecccccCCcC-ccccC-CCCCccEEEecCCCCCCC
Q 008287 366 ETNDLEELPHTIGQCSSLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNNIKQL-PTTMS-SLSSLRELDVSFNELESV 442 (571)
Q Consensus 366 ~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~l-p~~l~-~l~~L~~L~Ls~n~l~~i 442 (571)
++|.+..++.. .+++|+.|++++|.++.+ |..+..+++|++|+|++|.+.++ |..+. .+++|++|+|++|.++.+
T Consensus 107 ~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 107 ANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred cCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 99999987653 578999999999999976 56788899999999999999984 55554 799999999999999988
Q ss_pred chhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCCC
Q 008287 443 PESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVP 513 (571)
Q Consensus 443 ~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 513 (571)
+.. ..+++|+.|+|++| .+..+|..+..+++|+.|+|++|+|+.+|..+..+++|+.|++++|++.|.
T Consensus 185 ~~~-~~l~~L~~L~Ls~N--~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 185 KGQ-VVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp ECC-CCCTTCCEEECCSS--CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred ccc-ccCCCCCEEECCCC--CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence 653 46999999999999 566788889999999999999999999999999999999999999999854
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.9e-23 Score=208.98 Aligned_cols=221 Identities=29% Similarity=0.405 Sum_probs=154.7
Q ss_pred EEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcch-hhcCCCCccEEEccCCCCCCCch-hhcCCCCCCEEEccCCCC
Q 008287 270 SLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNNL 347 (571)
Q Consensus 270 ~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~l 347 (571)
.++..+..+..+|..+. ++|++|+|++|.++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 45556666777776443 468888888888887654 67778888888888888877654 577778888888888877
Q ss_pred CCCc-hhhcCCcCCcEEeccCCCCCCCcc-ccCCCCCCcEEEccCCCCCC--CccccccCCccceeecccccCCcCc-cc
Q 008287 348 SSLP-DSIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRLKA--LPEAVGKIHTLEVLSVRYNNIKQLP-TT 422 (571)
Q Consensus 348 ~~lp-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~--l~~~l~~l~~L~~L~L~~n~i~~lp-~~ 422 (571)
..++ ..+..+++|++|++++|.+..++. .+..+++|++|++++|.++. +|..+..+++|++|++++|.+.+++ ..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 7654 446677777777777777766544 46666777777777776664 4556666666666666666666543 23
Q ss_pred cCCCCCcc----EEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccch-hhcCC
Q 008287 423 MSSLSSLR----ELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRML 497 (571)
Q Consensus 423 l~~l~~L~----~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l 497 (571)
+..+++|+ +|++++|.++.+ +.......+|+.|+|++|+|+.+|. .+..+
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~-------------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 223 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFI-------------------------QPGAFKEIRLKELALDTNQLKSVPDGIFDRL 223 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEE-------------------------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred hhhhhhccccceeeecCCCccccc-------------------------CccccCCCcccEEECCCCceeecCHhHhccc
Confidence 33333333 555555555544 3333344589999999999998876 56899
Q ss_pred CCCcEEEcccCCCCCCChHH
Q 008287 498 SRLRVLRVQENPLEVPPRNI 517 (571)
Q Consensus 498 ~~L~~L~L~~N~l~~~~~~~ 517 (571)
++|+.|+|++|++.|.|..+
T Consensus 224 ~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 224 TSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CSCCEEECCSSCBCCCTTTT
T ss_pred ccccEEEccCCcccccCCch
Confidence 99999999999999998653
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=4.8e-23 Score=228.51 Aligned_cols=242 Identities=31% Similarity=0.383 Sum_probs=212.5
Q ss_pred CCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEcc
Q 008287 241 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 320 (571)
Q Consensus 241 ~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls 320 (571)
+++.|+++++.+.. +|..+. ++|++|+|++|.++.+|. .+++|++|+|++|+++.+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~---lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTT---LPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSC---CCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCc---cChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 68999999998775 455554 899999999999999987 57899999999999999987 78999999999
Q ss_pred CCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCcccc
Q 008287 321 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAV 400 (571)
Q Consensus 321 ~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l 400 (571)
+|.++.+|. .+++|+.|++++|.++.+|.. +++|++|++++|.+..+|. .+.+|+.|++++|.++.+|
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~--- 177 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP--- 177 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC---
T ss_pred CCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc---
Confidence 999999986 678999999999999999864 4899999999999998876 4578999999999999998
Q ss_pred ccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEE
Q 008287 401 GKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEEL 480 (571)
Q Consensus 401 ~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L 480 (571)
..+++|+.|++++|.+..+|.. +++|+.|++++|.++.+|.. +++|+.|++++| .+..+| ..+++|+.|
T Consensus 178 ~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N--~L~~lp---~~l~~L~~L 246 (622)
T 3g06_A 178 MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN--RLTSLP---VLPSELKEL 246 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSS--CCSCCC---CCCTTCCEE
T ss_pred ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCC--ccCcCC---CCCCcCcEE
Confidence 4568999999999999998764 47899999999999998853 589999999999 455677 567899999
Q ss_pred ecccCCCCccchhhcCCCCCcEEEcccCCCCCCChHHHh
Q 008287 481 DISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRNIVE 519 (571)
Q Consensus 481 ~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 519 (571)
+|++|+|+.+|. .+++|+.|+|++|.++..|..+..
T Consensus 247 ~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~ 282 (622)
T 3g06_A 247 MVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIH 282 (622)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGG
T ss_pred ECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhh
Confidence 999999999988 678999999999999987766544
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=2.8e-23 Score=222.80 Aligned_cols=219 Identities=28% Similarity=0.447 Sum_probs=194.8
Q ss_pred CCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCccc-chhcCCCCccEEEcccCCCCCcch-hhcCCCCccE
Q 008287 239 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVY 316 (571)
Q Consensus 239 ~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~ 316 (571)
.++++.|+|++|.+..+. +..|..+++|++|+|++|.+..++ ..|.++++|++|+|++|.++.++. .+..+++|++
T Consensus 74 ~~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQ--ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CTTCSEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCCccEEECcCCcCceEC--HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 368999999999887764 678999999999999999999875 589999999999999999998866 4888999999
Q ss_pred EEccCCCCCCCch-hhcCCCCCCEEEccC-CCCCCCch-hhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCC
Q 008287 317 LDLRGNQISALPV-ALSRLVRLEELDLGS-NNLSSLPD-SIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRL 393 (571)
Q Consensus 317 L~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~-n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l 393 (571)
|+|++|.++.++. .+.++++|+.|++++ +.+..++. .+..+++|+.|++++|.+..+| .+..+++|++|++++|.+
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcC
Confidence 9999999998876 788999999999999 46667765 4889999999999999999986 588999999999999999
Q ss_pred CCC-ccccccCCccceeecccccCCcC-ccccCCCCCccEEEecCCCCCCCchh-hhcCCCCcEEEccCC
Q 008287 394 KAL-PEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPES-LCFATTLVKMNIGNN 460 (571)
Q Consensus 394 ~~l-~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~Ls~n~l~~i~~~-l~~~~~L~~L~L~~n 460 (571)
+.+ +..+..+++|+.|+|++|.+..+ +..+..+++|++|+|++|.++.++.. +..+++|+.|+|++|
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 976 67889999999999999999986 56789999999999999999988754 466888888888887
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=3.5e-23 Score=221.22 Aligned_cols=219 Identities=29% Similarity=0.445 Sum_probs=195.4
Q ss_pred CCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCccc-chhcCCCCccEEEcccCCCCCcch-hhcCCCCccE
Q 008287 239 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVY 316 (571)
Q Consensus 239 ~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~ 316 (571)
.++++.|+|++|.+..+. +..|..+++|++|+|++|.+..++ ..|.++++|++|+|++|+++.++. .+..+++|++
T Consensus 63 ~~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIK--VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp CTTCSEEECCSCCCCEEC--TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCCCcEEEccCCcCCeeC--HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 368999999999888765 578899999999999999999875 589999999999999999998866 6899999999
Q ss_pred EEccCCCCCCCch-hhcCCCCCCEEEccCC-CCCCCch-hhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCC
Q 008287 317 LDLRGNQISALPV-ALSRLVRLEELDLGSN-NLSSLPD-SIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRL 393 (571)
Q Consensus 317 L~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n-~l~~lp~-~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l 393 (571)
|+|++|.+..++. .+.++++|++|++++| .+..++. .+..+++|+.|++++|.++.+| .+..+++|++|++++|++
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCcc
Confidence 9999999998876 7889999999999995 5666665 5889999999999999999987 488999999999999999
Q ss_pred CCC-ccccccCCccceeecccccCCcC-ccccCCCCCccEEEecCCCCCCCchh-hhcCCCCcEEEccCC
Q 008287 394 KAL-PEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPES-LCFATTLVKMNIGNN 460 (571)
Q Consensus 394 ~~l-~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~Ls~n~l~~i~~~-l~~~~~L~~L~L~~n 460 (571)
+.+ +..+..+++|+.|+|++|.+..+ +..+..+++|++|+|++|.++.++.. +..+++|+.|+|++|
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 976 57889999999999999999986 46789999999999999999988754 467888999999887
No 68
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=1e-22 Score=226.34 Aligned_cols=130 Identities=27% Similarity=0.342 Sum_probs=117.3
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCcch-hhcCCCCccEE
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYL 317 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L 317 (571)
++++.|+|++|.+..+. +..|..+++|++|+|++|.|+.++. .|.++++|++|+|++|+++.+|. .|.++++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l~--~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCCC--HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 47999999999887765 5689999999999999999999865 79999999999999999999875 68999999999
Q ss_pred EccCCCCCCCch-hhcCCCCCCEEEccCCCCCC--CchhhcCCcCCcEEeccCCCCC
Q 008287 318 DLRGNQISALPV-ALSRLVRLEELDLGSNNLSS--LPDSIGSLISLKKLIVETNDLE 371 (571)
Q Consensus 318 ~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~~n~l~ 371 (571)
++++|+++.++. .++++++|++|++++|.+.. +|..++.+++|++|++++|.+.
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 999999999886 58999999999999999984 5678899999999999998764
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2e-22 Score=201.01 Aligned_cols=201 Identities=36% Similarity=0.590 Sum_probs=119.7
Q ss_pred CCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcch-hhcCCCCccEEEccCCCCCCCchh-hcCCCCCCEEEccCC
Q 008287 268 LVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALPVA-LSRLVRLEELDLGSN 345 (571)
Q Consensus 268 L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~i~~lp~~-l~~l~~L~~L~Ls~n 345 (571)
.+.++++++.++.+|..+. ++|++|+|++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4455555555555543222 345555555555544432 344444444444444444444332 233444444444444
Q ss_pred CCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCc-cccccCCccceeecccccCCcCcc-cc
Q 008287 346 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALP-EAVGKIHTLEVLSVRYNNIKQLPT-TM 423 (571)
Q Consensus 346 ~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~lp~-~l 423 (571)
.+..++. ..+..+++|++|++++|+++.++ ..+..+++|++|+|++|.+..++. .+
T Consensus 96 ~l~~~~~----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 153 (270)
T 2o6q_A 96 KLQALPI----------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153 (270)
T ss_dssp CCCCCCT----------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCcCCH----------------------hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc
Confidence 4433322 12344555555555555555443 234556666666666666666554 35
Q ss_pred CCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccch-hhcCCCCCcE
Q 008287 424 SSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRV 502 (571)
Q Consensus 424 ~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~ 502 (571)
..+++|++|+|++|.++.++. ..+..+++|+.|+|++|+|+.+|. .+..+++|+.
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPE------------------------GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCT------------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCcccceeEecCCcCcEeCh------------------------hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence 667777777777776665532 246778899999999999998876 5888999999
Q ss_pred EEcccCCCCCCChH
Q 008287 503 LRVQENPLEVPPRN 516 (571)
Q Consensus 503 L~L~~N~l~~~~~~ 516 (571)
|+|++|||.|.|..
T Consensus 210 L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 210 LQLQENPWDCTCNG 223 (270)
T ss_dssp EECCSSCBCCSSSS
T ss_pred EEecCCCeeCCCcc
Confidence 99999999999864
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.4e-22 Score=206.37 Aligned_cols=197 Identities=21% Similarity=0.385 Sum_probs=119.2
Q ss_pred CCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEc
Q 008287 263 GKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDL 342 (571)
Q Consensus 263 ~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~L 342 (571)
..+++|++|++++|.+..++ .+..+++|++|+|++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 35667777777777777665 36667777777777777776655 667777777777777776664 5666667777777
Q ss_pred cCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccc
Q 008287 343 GSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTT 422 (571)
Q Consensus 343 s~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~ 422 (571)
++|.+..++. +..+++|+.|++++|.+..++. +..+++|++|++++|.++.++. +..+++|+.|++++|.+.+++.
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence 7766666543 5566666666666666555543 5555555555555555555443 4455555555555555555433
Q ss_pred cCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccch
Q 008287 423 MSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD 492 (571)
Q Consensus 423 l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 492 (571)
+..+++|++|+|++|.++.++ .+..+++|+.|+|++|.++..|.
T Consensus 191 l~~l~~L~~L~L~~N~l~~~~--------------------------~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISDVS--------------------------PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp GGGCTTCCEEECTTSCCCBCG--------------------------GGTTCTTCCEEEEEEEEEECCCE
T ss_pred hcCCCCCCEEEccCCccCccc--------------------------cccCCCCCCEEEccCCeeecCCe
Confidence 444555555555555544432 24556666666666666665544
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.5e-22 Score=206.03 Aligned_cols=210 Identities=22% Similarity=0.376 Sum_probs=149.6
Q ss_pred eeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCch
Q 008287 273 LSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPD 352 (571)
Q Consensus 273 Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 352 (571)
+..+.+.++.. +..+++|++|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++
T Consensus 26 l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~- 101 (308)
T 1h6u_A 26 AGKSNVTDTVT-QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS- 101 (308)
T ss_dssp TTCSSTTSEEC-HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-
T ss_pred hCCCCcCceec-HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-
Confidence 33444444322 345667777788777777775 56777777888887777777765 777777777777777777664
Q ss_pred hhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCCCCCccEE
Q 008287 353 SIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLREL 432 (571)
Q Consensus 353 ~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L 432 (571)
.+..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.+.+++. +..+++|++|
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTL 178 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEE
Confidence 46667777777777777766654 6666777777777776666654 5566666666666666666554 5666666666
Q ss_pred EecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCCC
Q 008287 433 DVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEV 512 (571)
Q Consensus 433 ~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~ 512 (571)
++++|.++.++ .+..+++|++|+|++|+|+.++. +..+++|+.|+|++|+++.
T Consensus 179 ~l~~n~l~~~~--------------------------~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 179 KADDNKISDIS--------------------------PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ECCSSCCCCCG--------------------------GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred ECCCCccCcCh--------------------------hhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 66666665442 26678999999999999999885 8999999999999999987
Q ss_pred CChH
Q 008287 513 PPRN 516 (571)
Q Consensus 513 ~~~~ 516 (571)
.+..
T Consensus 232 ~~~~ 235 (308)
T 1h6u_A 232 QPVF 235 (308)
T ss_dssp CCEE
T ss_pred CCee
Confidence 6643
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=6.4e-24 Score=227.65 Aligned_cols=272 Identities=24% Similarity=0.255 Sum_probs=213.9
Q ss_pred CCcEEEecCCCCCCcc--ccccccCCCCCCCEEEeeCCCCCcc-----cch-hcCCCCccEEEcccCCCCC-----cchh
Q 008287 241 GTRDLNLQNKLMDNIE--WLPDSIGKLSSLVSLDLSENRIVAV-----PAT-IGGLSSLKKLDLHANRIIE-----LPDS 307 (571)
Q Consensus 241 ~l~~L~L~~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~i~~l-----~~~-l~~l~~L~~L~L~~n~l~~-----lp~~ 307 (571)
+|+.|+|++|.+...+ .++..+..+++|++|++++|.+... ... ....++|++|+|++|.++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 6999999999877543 5678889999999999999998742 111 2346789999999999884 4566
Q ss_pred hcCCCCccEEEccCCCCCCCc-----hhhc-CCCCCCEEEccCCCCCC-----CchhhcCCcCCcEEeccCCCCCCC---
Q 008287 308 IGDLLSLVYLDLRGNQISALP-----VALS-RLVRLEELDLGSNNLSS-----LPDSIGSLISLKKLIVETNDLEEL--- 373 (571)
Q Consensus 308 l~~l~~L~~L~Ls~n~i~~lp-----~~l~-~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~l--- 373 (571)
+..+++|++|++++|.+.... ..+. ..++|++|++++|.++. ++..+..+++|++|++++|.+...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 778899999999999987421 2222 46799999999999986 567788899999999999988743
Q ss_pred ---ccccCCCCCCcEEEccCCCCCC-----CccccccCCccceeecccccCCc-----Ccccc-CCCCCccEEEecCCCC
Q 008287 374 ---PHTIGQCSSLRELRVDYNRLKA-----LPEAVGKIHTLEVLSVRYNNIKQ-----LPTTM-SSLSSLRELDVSFNEL 439 (571)
Q Consensus 374 ---~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~i~~-----lp~~l-~~l~~L~~L~Ls~n~l 439 (571)
+..+..+++|++|++++|.++. ++..+..+++|++|++++|.+.+ +...+ ...++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 2233468999999999999985 67778889999999999999875 22222 2346999999999999
Q ss_pred CC-----CchhhhcCCCCcEEEccCCccCCC---ccchhccC-CCCccEEecccCCCC-----ccchhhcCCCCCcEEEc
Q 008287 440 ES-----VPESLCFATTLVKMNIGNNFADLR---ALPRSIGN-LEMLEELDISNNQIR-----VLPDSFRMLSRLRVLRV 505 (571)
Q Consensus 440 ~~-----i~~~l~~~~~L~~L~L~~n~~~l~---~lp~~l~~-l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L 505 (571)
+. ++..+..+++|+.|++++|..... .+...+.. +++|+.|+|++|+|+ .+|..+..+++|+.|+|
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence 84 456677889999999999943321 12223332 689999999999999 67888999999999999
Q ss_pred ccCCCCC
Q 008287 506 QENPLEV 512 (571)
Q Consensus 506 ~~N~l~~ 512 (571)
++|+++.
T Consensus 406 ~~N~i~~ 412 (461)
T 1z7x_W 406 SNNCLGD 412 (461)
T ss_dssp CSSSCCH
T ss_pred CCCCCCH
Confidence 9999874
No 73
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=6.2e-24 Score=223.04 Aligned_cols=241 Identities=21% Similarity=0.235 Sum_probs=146.8
Q ss_pred ccccccccCCCCCCCEEEeeCCCCCc-----ccchhcCCCCccEEEcccCCCCC----cchhh-------cCCCCccEEE
Q 008287 255 IEWLPDSIGKLSSLVSLDLSENRIVA-----VPATIGGLSSLKKLDLHANRIIE----LPDSI-------GDLLSLVYLD 318 (571)
Q Consensus 255 ~~~l~~~~~~l~~L~~L~Ls~n~i~~-----l~~~l~~l~~L~~L~L~~n~l~~----lp~~l-------~~l~~L~~L~ 318 (571)
+..++..+..+++|++|+|++|.+.. ++..+.++++|++|+|++|.+.. +|..+ ..+++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 33455666677777777777777664 22345677777777777765542 23333 5677777777
Q ss_pred ccCCCCCC-----CchhhcCCCCCCEEEccCCCCCC-----CchhhcCC---------cCCcEEeccCCCCC--CCc---
Q 008287 319 LRGNQISA-----LPVALSRLVRLEELDLGSNNLSS-----LPDSIGSL---------ISLKKLIVETNDLE--ELP--- 374 (571)
Q Consensus 319 Ls~n~i~~-----lp~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l---------~~L~~L~L~~n~l~--~l~--- 374 (571)
|++|.++. ++..+..+++|++|++++|.++. ++..+..+ ++|++|++++|.++ .++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 77777775 55666777777777777777652 22223333 56666666666654 222
Q ss_pred cccCCCCCCcEEEccCCCCC--C----CccccccCCccceeecccccCC-----cCccccCCCCCccEEEecCCCCCCCc
Q 008287 375 HTIGQCSSLRELRVDYNRLK--A----LPEAVGKIHTLEVLSVRYNNIK-----QLPTTMSSLSSLRELDVSFNELESVP 443 (571)
Q Consensus 375 ~~l~~l~~L~~L~Ls~n~l~--~----l~~~l~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~Ls~n~l~~i~ 443 (571)
..+..+++|++|++++|+++ . ++..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++...
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 24445556666666666655 1 2224455556666666666552 24555555566666666666554321
Q ss_pred hhhhcCCCCcEEEccCCccCCCccchhc--cCCCCccEEecccCCCCc-----cchhh-cCCCCCcEEEcccCCCCCCCh
Q 008287 444 ESLCFATTLVKMNIGNNFADLRALPRSI--GNLEMLEELDISNNQIRV-----LPDSF-RMLSRLRVLRVQENPLEVPPR 515 (571)
Q Consensus 444 ~~l~~~~~L~~L~L~~n~~~l~~lp~~l--~~l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~L~~N~l~~~~~ 515 (571)
...++..+ +.+++|+.|+|++|+|+. +|..+ ..+++|+.|+|++|+++....
T Consensus 261 --------------------~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 261 --------------------AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp --------------------HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred --------------------HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 01234455 337778888888888876 67666 557888888888888876553
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=7e-22 Score=199.41 Aligned_cols=196 Identities=26% Similarity=0.355 Sum_probs=90.4
Q ss_pred CCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcc-cchhcCCCCccEEEcccCCCCCcchhhcCCCCccE
Q 008287 238 SKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVY 316 (571)
Q Consensus 238 ~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 316 (571)
.+++++.++++++++..+ |..+. ++++.|+|++|.+..+ +..|.++++|++|+|++|.++.++.. ..+++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~i---p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTAL---PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp CSTTCCEEECTTSCCSSC---CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccCCccEEECCCCCCCcC---CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 344455555555443332 22221 3455555555555444 23444555555555555555544332 44455555
Q ss_pred EEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCc-hhhcCCcCCcEEeccCCCCCCCccc-cCCCCCCcEEEccCCCCC
Q 008287 317 LDLRGNQISALPVALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLK 394 (571)
Q Consensus 317 L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~ 394 (571)
|++++|.++.+|..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.+..++.. +..+++|+.|++++|+++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 55555555555444444555555555555555443 2244444444444444444444332 334444444444444444
Q ss_pred CCcc-ccccCCccceeecccccCCcCccccCCCCCccEEEecCCCC
Q 008287 395 ALPE-AVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNEL 439 (571)
Q Consensus 395 ~l~~-~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l 439 (571)
.+|. .+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|.+
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 4432 22334444444444444444444444444444444444443
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=4.8e-22 Score=198.71 Aligned_cols=202 Identities=29% Similarity=0.381 Sum_probs=168.1
Q ss_pred ccccccCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCcch-hhcCCCCccEEEccCCCCCCCc-hhhcC
Q 008287 257 WLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALP-VALSR 333 (571)
Q Consensus 257 ~l~~~~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~i~~lp-~~l~~ 333 (571)
.+|..+. ++|++|++++|.+..++. .+.++++|++|+|++|.++.++. .+..+++|++|++++|.++.++ ..+.+
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 3555443 589999999999998865 78999999999999999998754 7899999999999999999876 47899
Q ss_pred CCCCCEEEccCCCCCCCch-hhcCCcCCcEEeccCCCCCC--CccccCCCCCCcEEEccCCCCCCCc-cccccCCccc--
Q 008287 334 LVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDLEE--LPHTIGQCSSLRELRVDYNRLKALP-EAVGKIHTLE-- 407 (571)
Q Consensus 334 l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~--l~~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~-- 407 (571)
+++|++|++++|.+..++. .+..+++|++|++++|.+.. +|..+..+++|++|++++|+++.++ ..+..+.+|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 9999999999999998765 58899999999999999986 6889999999999999999999765 4566666666
Q ss_pred --eeecccccCCcCccccCCCCCccEEEecCCCCCCCchhh-hcCCCCcEEEccCC
Q 008287 408 --VLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESL-CFATTLVKMNIGNN 460 (571)
Q Consensus 408 --~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l-~~~~~L~~L~L~~n 460 (571)
.|++++|.+..++.......+|++|+|++|.++.++..+ ..+++|+.|++++|
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 899999999998776666679999999999998776432 33333333333333
No 76
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=2.3e-23 Score=223.39 Aligned_cols=274 Identities=22% Similarity=0.255 Sum_probs=172.8
Q ss_pred cCCCCCcEEEecCCCCCCccccccccCCCC----CCCEEEeeCCCCCc-----ccchhcCCCCccEEEcccCCCCCc-ch
Q 008287 237 SSKKGTRDLNLQNKLMDNIEWLPDSIGKLS----SLVSLDLSENRIVA-----VPATIGGLSSLKKLDLHANRIIEL-PD 306 (571)
Q Consensus 237 ~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~----~L~~L~Ls~n~i~~-----l~~~l~~l~~L~~L~L~~n~l~~l-p~ 306 (571)
..+++|+.|+|++|.+.+.. +......++ +|++|+|++|.+.. ++..+.++++|++|+|++|.++.. +.
T Consensus 53 ~~~~~L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 131 (461)
T 1z7x_W 53 RVNPALAELNLRSNELGDVG-VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ 131 (461)
T ss_dssp HTCTTCCEEECTTCCCHHHH-HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred HhCCCcCEEeCCCCcCChHH-HHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence 34567777777777655421 111122233 57777777777762 455667777777777777776532 11
Q ss_pred ----h-hcCCCCccEEEccCCCCCC-----CchhhcCCCCCCEEEccCCCCCCCc-hhhc-----CCcCCcEEeccCCCC
Q 008287 307 ----S-IGDLLSLVYLDLRGNQISA-----LPVALSRLVRLEELDLGSNNLSSLP-DSIG-----SLISLKKLIVETNDL 370 (571)
Q Consensus 307 ----~-l~~l~~L~~L~Ls~n~i~~-----lp~~l~~l~~L~~L~Ls~n~l~~lp-~~l~-----~l~~L~~L~L~~n~l 370 (571)
. ...+++|++|++++|.++. ++..+..+++|++|++++|.+.... ..+. ..++|++|++++|.+
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 1 1224567777777777764 3445666777777777777765321 1121 245777777777777
Q ss_pred CC-----CccccCCCCCCcEEEccCCCCCCC------ccccccCCccceeecccccCCc-----CccccCCCCCccEEEe
Q 008287 371 EE-----LPHTIGQCSSLRELRVDYNRLKAL------PEAVGKIHTLEVLSVRYNNIKQ-----LPTTMSSLSSLRELDV 434 (571)
Q Consensus 371 ~~-----l~~~l~~l~~L~~L~Ls~n~l~~l------~~~l~~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~L 434 (571)
+. ++..+..+++|++|++++|.++.. +.....+++|++|++++|.++. ++..+..+++|++|+|
T Consensus 212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 291 (461)
T 1z7x_W 212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291 (461)
T ss_dssp BTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred cHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEEC
Confidence 65 455666777888888888776532 1222346778888888887776 5666677778888888
Q ss_pred cCCCCCCC-----chhhh-cCCCCcEEEccCCccCCC---ccchhccCCCCccEEecccCCCCcc-c----hhhcC-CCC
Q 008287 435 SFNELESV-----PESLC-FATTLVKMNIGNNFADLR---ALPRSIGNLEMLEELDISNNQIRVL-P----DSFRM-LSR 499 (571)
Q Consensus 435 s~n~l~~i-----~~~l~-~~~~L~~L~L~~n~~~l~---~lp~~l~~l~~L~~L~Ls~n~l~~l-p----~~l~~-l~~ 499 (571)
++|.++.. ...+. ..++|+.|++++|..... .++..+..+++|++|+|++|+|+.. + ..+.. .++
T Consensus 292 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence 88877532 11111 225788888888743322 2456677778888888888888743 2 22332 678
Q ss_pred CcEEEcccCCCC
Q 008287 500 LRVLRVQENPLE 511 (571)
Q Consensus 500 L~~L~L~~N~l~ 511 (571)
|+.|+|++|.++
T Consensus 372 L~~L~L~~n~i~ 383 (461)
T 1z7x_W 372 LRVLWLADCDVS 383 (461)
T ss_dssp CCEEECTTSCCC
T ss_pred eEEEECCCCCCC
Confidence 888888888876
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.4e-21 Score=191.09 Aligned_cols=202 Identities=18% Similarity=0.270 Sum_probs=133.7
Q ss_pred CCcccchhcCCCCccEEEcccCCCCCcch-hhcCCCCccEEEccCCC-CCCCch-hhcCCCCCCEEEccC-CCCCCCch-
Q 008287 278 IVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQ-ISALPV-ALSRLVRLEELDLGS-NNLSSLPD- 352 (571)
Q Consensus 278 i~~l~~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~-i~~lp~-~l~~l~~L~~L~Ls~-n~l~~lp~- 352 (571)
++.+|. +. .+|++|++++|+++.++. .+..+++|++|++++|. ++.++. .+..+++|++|++++ |.++.++.
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 666666 33 378888888888877755 57777888888888886 777665 567777777777777 77776653
Q ss_pred hhcCCcCCcEEeccCCCCCCCccccCCCCCCc---EEEccCC-CCCCCcc-ccccCCccc-eeecccccCCcCccccCCC
Q 008287 353 SIGSLISLKKLIVETNDLEELPHTIGQCSSLR---ELRVDYN-RLKALPE-AVGKIHTLE-VLSVRYNNIKQLPTTMSSL 426 (571)
Q Consensus 353 ~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~---~L~Ls~n-~l~~l~~-~l~~l~~L~-~L~L~~n~i~~lp~~l~~l 426 (571)
.+..+++|++|++++|.+..+|. +..+++|+ +|++++| .++.++. .+..+++|+ +|++++|.+..+|......
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence 45666777777777776666655 55555555 6666666 5555542 345555565 6666665555554433222
Q ss_pred CCccEEEecCCC-CCCCchhhhcCCCCcEEEccCCccCCCccchhccCC-CCccEEecccCCCCccchhhcCCCCCcEEE
Q 008287 427 SSLRELDVSFNE-LESVPESLCFATTLVKMNIGNNFADLRALPRSIGNL-EMLEELDISNNQIRVLPDSFRMLSRLRVLR 504 (571)
Q Consensus 427 ~~L~~L~Ls~n~-l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 504 (571)
++|++|+|++|. ++.++ +..+..+ ++|+.|+|++|+|+.+|.. .+++|+.|+
T Consensus 179 ~~L~~L~L~~n~~l~~i~------------------------~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~ 232 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVID------------------------KDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELI 232 (239)
T ss_dssp CEEEEEECTTCTTCCEEC------------------------TTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEE
T ss_pred CCCCEEEcCCCCCcccCC------------------------HHHhhccccCCcEEECCCCccccCChh--HhccCceee
Confidence 555555555553 54443 2346677 8899999999999888874 688888998
Q ss_pred cccCC
Q 008287 505 VQENP 509 (571)
Q Consensus 505 L~~N~ 509 (571)
+.+++
T Consensus 233 l~~~~ 237 (239)
T 2xwt_C 233 ARNTW 237 (239)
T ss_dssp CTTC-
T ss_pred ccCcc
Confidence 88764
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.4e-20 Score=187.60 Aligned_cols=195 Identities=33% Similarity=0.533 Sum_probs=160.6
Q ss_pred CCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCcchh-hcCCCCccEEE
Q 008287 241 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPDS-IGDLLSLVYLD 318 (571)
Q Consensus 241 ~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~ 318 (571)
..+.++++++.+..+ |..+. ++|+.|+|++|.+..++. .|.++++|++|+|++|.++.++.. +..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~~i---p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI---PSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSSC---CSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCCcc---CCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 578899999877654 44443 689999999999998865 789999999999999999988765 58899999999
Q ss_pred ccCCCCCCCch-hhcCCCCCCEEEccCCCCCCCchh-hcCCcCCcEEeccCCCCCCCccc-cCCCCCCcEEEccCCCCCC
Q 008287 319 LRGNQISALPV-ALSRLVRLEELDLGSNNLSSLPDS-IGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLKA 395 (571)
Q Consensus 319 Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~ 395 (571)
+++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++|.+..++.. +..+++|++|++++|+++.
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 99999998876 568899999999999999987654 67888899999988888877654 6778888888888888887
Q ss_pred Ccc-ccccCCccceeecccccCCcCcc-ccCCCCCccEEEecCCCCC
Q 008287 396 LPE-AVGKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELE 440 (571)
Q Consensus 396 l~~-~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~ 440 (571)
++. .+..+++|++|++++|.+..++. .+..+++|+.|+|++|.+.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 764 46677788888888888877664 4677777888888877764
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.2e-21 Score=188.55 Aligned_cols=192 Identities=18% Similarity=0.264 Sum_probs=138.9
Q ss_pred CCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCC-CCCcch-hhcCCCCccEEEccC-CCCCCCch-hhcCCCCCCEE
Q 008287 266 SSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANR-IIELPD-SIGDLLSLVYLDLRG-NQISALPV-ALSRLVRLEEL 340 (571)
Q Consensus 266 ~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~-l~~lp~-~l~~l~~L~~L~Ls~-n~i~~lp~-~l~~l~~L~~L 340 (571)
++|++|++++|.++.++. .|.++++|++|++++|+ ++.++. .+..+++|++|++++ |.++.++. .+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 367777777777777654 56777777777777775 766654 567777777777777 77776654 56677777777
Q ss_pred EccCCCCCCCchhhcCCcCCc---EEeccCC-CCCCCcc-ccCCCCCCc-EEEccCCCCCCCccccccCCccceeecccc
Q 008287 341 DLGSNNLSSLPDSIGSLISLK---KLIVETN-DLEELPH-TIGQCSSLR-ELRVDYNRLKALPEAVGKIHTLEVLSVRYN 414 (571)
Q Consensus 341 ~Ls~n~l~~lp~~l~~l~~L~---~L~L~~n-~l~~l~~-~l~~l~~L~-~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n 414 (571)
++++|.++.+|. +..+++|+ .|++++| .+..++. .+..+++|+ +|++++|+++.+|......++|+.|++++|
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 777777777765 66666666 7788877 7776655 467788888 888888888877654444478888888888
Q ss_pred c-CCcCc-cccCCC-CCccEEEecCCCCCCCchhhhcCCCCcEEEccCC
Q 008287 415 N-IKQLP-TTMSSL-SSLRELDVSFNELESVPESLCFATTLVKMNIGNN 460 (571)
Q Consensus 415 ~-i~~lp-~~l~~l-~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n 460 (571)
. +..++ ..+..+ ++|++|++++|.++.+|.. .+++|+.|++.++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 4 87765 457777 8888888888888877654 4556666666554
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=2.5e-21 Score=193.33 Aligned_cols=205 Identities=29% Similarity=0.432 Sum_probs=114.5
Q ss_pred cCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCch-hhcCCCCCCEE
Q 008287 262 IGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEEL 340 (571)
Q Consensus 262 ~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~-~l~~l~~L~~L 340 (571)
...+++|+.|++++|.+..++. +..+++|++|+|++|.+..++ .+..+++|++|++++|.++.++. .+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3456667777777776666543 556667777777776666653 56666666666666666666554 34566666666
Q ss_pred EccCCCCCCCchh-hcCCcCCcEEeccCCCCCCCccc-cCCCCCCcEEEccCCCCCCCcc-ccccCCccceeecccccCC
Q 008287 341 DLGSNNLSSLPDS-IGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLKALPE-AVGKIHTLEVLSVRYNNIK 417 (571)
Q Consensus 341 ~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~i~ 417 (571)
++++|.++.++.. +..+++|++|++++|.++.++.. +..+++|+.|++++|+++.++. .+..+++|++|++++|.+.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 6666666655433 45555555555555555544432 3445555555555555544432 2344444444444444444
Q ss_pred cCcc-ccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCC-ccchhhc
Q 008287 418 QLPT-TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR-VLPDSFR 495 (571)
Q Consensus 418 ~lp~-~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~ 495 (571)
+++. .+..+++|++|+|++|.+. +.+++|+.|+++.|+++ .+|.+++
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~-------------------------------~~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD-------------------------------CTCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC-------------------------------CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc-------------------------------ccCcHHHHHHHHHHhCCCcccCccc
Confidence 4332 2344444444444444332 34556777777777665 5566555
Q ss_pred CCCC
Q 008287 496 MLSR 499 (571)
Q Consensus 496 ~l~~ 499 (571)
.++.
T Consensus 244 ~~~~ 247 (272)
T 3rfs_A 244 SVAP 247 (272)
T ss_dssp CBCG
T ss_pred ccCC
Confidence 5443
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=196.72 Aligned_cols=220 Identities=20% Similarity=0.252 Sum_probs=148.7
Q ss_pred CCCCEEEeeCCCCCc--ccc--hhcCCCCccEEEcccCCCCC-cchhh--cCCCCccEEEccCCCCCCC-c----hhhcC
Q 008287 266 SSLVSLDLSENRIVA--VPA--TIGGLSSLKKLDLHANRIIE-LPDSI--GDLLSLVYLDLRGNQISAL-P----VALSR 333 (571)
Q Consensus 266 ~~L~~L~Ls~n~i~~--l~~--~l~~l~~L~~L~L~~n~l~~-lp~~l--~~l~~L~~L~Ls~n~i~~l-p----~~l~~ 333 (571)
..++.|.+.++.+.. +.. .+..+++|++|+|++|.+.. .|..+ ..+++|++|++++|.+... + ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 457788888877752 111 12234568888888888874 45555 7788888888888888752 1 23446
Q ss_pred CCCCCEEEccCCCCCCCc-hhhcCCcCCcEEeccCCCCCC---Ccc--ccCCCCCCcEEEccCCCCCCCcc----ccccC
Q 008287 334 LVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLEE---LPH--TIGQCSSLRELRVDYNRLKALPE----AVGKI 403 (571)
Q Consensus 334 l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~---l~~--~l~~l~~L~~L~Ls~n~l~~l~~----~l~~l 403 (571)
+++|++|++++|.+..++ ..++.+++|++|++++|.+.. ++. .+..+++|++|++++|+++.++. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 778888888888777654 456677777777777776542 222 23566777777777777765543 23556
Q ss_pred CccceeecccccCCcC-ccccCCC---CCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccE
Q 008287 404 HTLEVLSVRYNNIKQL-PTTMSSL---SSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEE 479 (571)
Q Consensus 404 ~~L~~L~L~~n~i~~l-p~~l~~l---~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~ 479 (571)
++|++|+|++|.+.++ |..+..+ ++|++|+|++|.++.+| ..+. ++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp-------------------------~~~~--~~L~~ 276 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP-------------------------KGLP--AKLRV 276 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC-------------------------SCCC--SCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh-------------------------hhhc--CCCCE
Confidence 6777777777777664 5555444 46666666666666554 3332 67888
Q ss_pred EecccCCCCccchhhcCCCCCcEEEcccCCCCCC
Q 008287 480 LDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVP 513 (571)
Q Consensus 480 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 513 (571)
|+|++|+|+.+|. +..+++|+.|+|++|+++.+
T Consensus 277 L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 277 LDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp EECCSCCCCSCCC-TTSCCCCSCEECSSTTTSCC
T ss_pred EECCCCcCCCCch-hhhCCCccEEECcCCCCCCC
Confidence 8999998888866 67889999999999998753
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=3.1e-20 Score=185.40 Aligned_cols=199 Identities=28% Similarity=0.493 Sum_probs=129.5
Q ss_pred ccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCC
Q 008287 291 LKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDL 370 (571)
Q Consensus 291 L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l 370 (571)
+..+++.++.+..+ ..+..+++|+.|++++|.+..++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.+
T Consensus 21 l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 21 TIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCC
T ss_pred HHHHHhcCcccccc-cccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCcc
Confidence 33344444444433 12344556666666666665554 4555666666666666665543 455566666666666666
Q ss_pred CCCcc-ccCCCCCCcEEEccCCCCCCCcc-ccccCCccceeecccccCCcCcc-ccCCCCCccEEEecCCCCCCCchhhh
Q 008287 371 EELPH-TIGQCSSLRELRVDYNRLKALPE-AVGKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVPESLC 447 (571)
Q Consensus 371 ~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~i~~~l~ 447 (571)
+.++. .+..+++|++|++++|+++.++. .+..+++|++|++++|.+.+++. .+..+++|++|++++|.++.++.
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--- 174 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE--- 174 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---
T ss_pred CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH---
Confidence 55543 24566667777777776665543 35666677777777777766553 35667777777777777665532
Q ss_pred cCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccch-hhcCCCCCcEEEcccCCCCCCChH
Q 008287 448 FATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 448 ~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~ 516 (571)
..++.+++|+.|+|++|+++.++. .+..+++|+.|+|++|++.|.+..
T Consensus 175 ---------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 175 ---------------------GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp ---------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ---------------------HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 346778899999999999998765 578999999999999999988764
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=4.5e-22 Score=204.35 Aligned_cols=192 Identities=21% Similarity=0.247 Sum_probs=112.4
Q ss_pred CCcEEEecCCCCCCccccccccCCC--CCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCC--cchhhcCCCCccE
Q 008287 241 GTRDLNLQNKLMDNIEWLPDSIGKL--SSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIE--LPDSIGDLLSLVY 316 (571)
Q Consensus 241 ~l~~L~L~~~~~~~~~~l~~~~~~l--~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~ 316 (571)
.++.++++++.+. +..+..+ ++++.|++++|.+...+..+.++++|++|+|++|.++. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~-----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH-----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC-----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC-----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4677777776543 2344444 67777777777776654445567777777777777652 5556667777777
Q ss_pred EEccCCCCC-CCchhhcCCCCCCEEEccCC-CCC--CCchhhcCCcCCcEEeccCC-CCCC--CccccCCCC-CCcEEEc
Q 008287 317 LDLRGNQIS-ALPVALSRLVRLEELDLGSN-NLS--SLPDSIGSLISLKKLIVETN-DLEE--LPHTIGQCS-SLRELRV 388 (571)
Q Consensus 317 L~Ls~n~i~-~lp~~l~~l~~L~~L~Ls~n-~l~--~lp~~l~~l~~L~~L~L~~n-~l~~--l~~~l~~l~-~L~~L~L 388 (571)
|++++|.++ ..+..+..+++|++|++++| .++ .++..+..+++|++|++++| .++. ++..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 777777666 34556666777777777776 455 24444556666666666666 5552 344455555 5555555
Q ss_pred cCCC--CC--CCccccccCCccceeeccccc-CCc-CccccCCCCCccEEEecCC
Q 008287 389 DYNR--LK--ALPEAVGKIHTLEVLSVRYNN-IKQ-LPTTMSSLSSLRELDVSFN 437 (571)
Q Consensus 389 s~n~--l~--~l~~~l~~l~~L~~L~L~~n~-i~~-lp~~l~~l~~L~~L~Ls~n 437 (571)
++|. ++ .++..+..+++|++|++++|. +++ .+..+..+++|++|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 5552 22 233444445555555555554 332 3334444455555555554
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=5.8e-21 Score=194.35 Aligned_cols=217 Identities=18% Similarity=0.173 Sum_probs=139.0
Q ss_pred CCcEEEecCCCCCCcc--ccccccCCCCCCCEEEeeCCCCCc-ccchh--cCCCCccEEEcccCCCCCc-c----hhhcC
Q 008287 241 GTRDLNLQNKLMDNIE--WLPDSIGKLSSLVSLDLSENRIVA-VPATI--GGLSSLKKLDLHANRIIEL-P----DSIGD 310 (571)
Q Consensus 241 ~l~~L~L~~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~i~~-l~~~l--~~l~~L~~L~L~~n~l~~l-p----~~l~~ 310 (571)
.++.|.+.++.+.... .+.. +..+++|++|++++|.+.. .|..+ .++++|++|+|++|.++.. + ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4666676666543211 1111 1234557777777777764 34444 6677777777777777632 1 23345
Q ss_pred CCCccEEEccCCCCCCCc-hhhcCCCCCCEEEccCCCCCC---Cchh--hcCCcCCcEEeccCCCCCCCccc----cCCC
Q 008287 311 LLSLVYLDLRGNQISALP-VALSRLVRLEELDLGSNNLSS---LPDS--IGSLISLKKLIVETNDLEELPHT----IGQC 380 (571)
Q Consensus 311 l~~L~~L~Ls~n~i~~lp-~~l~~l~~L~~L~Ls~n~l~~---lp~~--l~~l~~L~~L~L~~n~l~~l~~~----l~~l 380 (571)
+++|++|++++|.+..++ ..+..+++|++|++++|.+.. ++.. ++.+++|++|++++|.++.++.. +..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 777777777777777654 366677777777777777653 2222 35677777777777777655442 4566
Q ss_pred CCCcEEEccCCCCCCC-ccccccC---CccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEE
Q 008287 381 SSLRELRVDYNRLKAL-PEAVGKI---HTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMN 456 (571)
Q Consensus 381 ~~L~~L~Ls~n~l~~l-~~~l~~l---~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~ 456 (571)
++|++|++++|+++.+ |..+..+ ++|++|+|++|.++.+|..+. ++|++|+|++|.++.+|. +..+++|+.|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~ 300 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLT 300 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEE
Confidence 7777777777777755 5555544 577777777777777776554 677777777777777654 45667777777
Q ss_pred ccCCc
Q 008287 457 IGNNF 461 (571)
Q Consensus 457 L~~n~ 461 (571)
+++|.
T Consensus 301 L~~N~ 305 (310)
T 4glp_A 301 LDGNP 305 (310)
T ss_dssp CSSTT
T ss_pred CcCCC
Confidence 77774
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=1.7e-21 Score=202.74 Aligned_cols=247 Identities=21% Similarity=0.256 Sum_probs=120.8
Q ss_pred EecCCCCCCccccccccCCCCCCCEEEeeCCCCCccc-----chhcCCC-CccEEEcccCCCCCc-chhhcCC-----CC
Q 008287 246 NLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-----ATIGGLS-SLKKLDLHANRIIEL-PDSIGDL-----LS 313 (571)
Q Consensus 246 ~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~-----~~l~~l~-~L~~L~L~~n~l~~l-p~~l~~l-----~~ 313 (571)
.++.+.+.+ .+|..+...++|++|+|++|.+...+ ..+.+++ +|++|+|++|.++.. +..+..+ ++
T Consensus 4 ~ls~n~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 4 KLTLHPGSN--PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp ECCCCTTCC--HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccchH--HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 344444333 22344444444666666666555443 3444555 555556555555533 2233222 55
Q ss_pred ccEEEccCCCCCCCch-----hhcCC-CCCCEEEccCCCCCCCch-hhcCCcCCcEEeccCCCCCCCccccCC-CCCCcE
Q 008287 314 LVYLDLRGNQISALPV-----ALSRL-VRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDLEELPHTIGQ-CSSLRE 385 (571)
Q Consensus 314 L~~L~Ls~n~i~~lp~-----~l~~l-~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l~~~l~~-l~~L~~ 385 (571)
|++|+|++|.++..+. .+..+ ++|++|++++|.++..+. .+.. .+.. .++|++
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-------------------~l~~~~~~L~~ 142 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ-------------------AFSNLPASITS 142 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH-------------------HHTTSCTTCCE
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH-------------------HHHhCCCceeE
Confidence 5555555555553221 13333 455555555555543321 1111 1222 234444
Q ss_pred EEccCCCCCC-----CccccccCC-ccceeecccccCCcCc-----cccCCC-CCccEEEecCCCCCC-----Cchhhhc
Q 008287 386 LRVDYNRLKA-----LPEAVGKIH-TLEVLSVRYNNIKQLP-----TTMSSL-SSLRELDVSFNELES-----VPESLCF 448 (571)
Q Consensus 386 L~Ls~n~l~~-----l~~~l~~l~-~L~~L~L~~n~i~~lp-----~~l~~l-~~L~~L~Ls~n~l~~-----i~~~l~~ 448 (571)
|++++|.++. ++..+..++ +|++|+|++|.+.+.. ..+..+ ++|++|+|++|.++. ++..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 4444444441 122222332 4555555555544322 122333 255555555555543 3333333
Q ss_pred -CCCCcEEEccCCccCC---CccchhccCCCCccEEecccCCCCc--------cchhhcCCCCCcEEEcccCCCCCC
Q 008287 449 -ATTLVKMNIGNNFADL---RALPRSIGNLEMLEELDISNNQIRV--------LPDSFRMLSRLRVLRVQENPLEVP 513 (571)
Q Consensus 449 -~~~L~~L~L~~n~~~l---~~lp~~l~~l~~L~~L~Ls~n~l~~--------lp~~l~~l~~L~~L~L~~N~l~~~ 513 (571)
.++|+.|+|++|.... ..+...+..+++|+.|+|++|.+.. ++..+..+++|+.|++++|++...
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 2355555555553222 1223455677888888888887443 344567788888888888887654
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=6.9e-22 Score=207.37 Aligned_cols=253 Identities=20% Similarity=0.247 Sum_probs=191.1
Q ss_pred ccCCCCCcEEEecCCCCCCcc--ccccccCCCCCCCEEEeeCCCCCc----ccch-------hcCCCCccEEEcccCCCC
Q 008287 236 VSSKKGTRDLNLQNKLMDNIE--WLPDSIGKLSSLVSLDLSENRIVA----VPAT-------IGGLSSLKKLDLHANRII 302 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~i~~----l~~~-------l~~l~~L~~L~L~~n~l~ 302 (571)
+..+++|+.|+|++|.+.... .++..+..+++|++|+|++|.+.. +|.. +.++++|++|+|++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 345678999999999877542 245568899999999999986553 3433 478999999999999998
Q ss_pred C-----cchhhcCCCCccEEEccCCCCCC-----CchhhcCC---------CCCCEEEccCCCCC--CCc---hhhcCCc
Q 008287 303 E-----LPDSIGDLLSLVYLDLRGNQISA-----LPVALSRL---------VRLEELDLGSNNLS--SLP---DSIGSLI 358 (571)
Q Consensus 303 ~-----lp~~l~~l~~L~~L~Ls~n~i~~-----lp~~l~~l---------~~L~~L~Ls~n~l~--~lp---~~l~~l~ 358 (571)
. ++..+..+++|++|+|++|.++. ++..+..+ ++|++|++++|.++ .++ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 6 67788999999999999999973 33344445 89999999999997 444 4677899
Q ss_pred CCcEEeccCCCCC--C----CccccCCCCCCcEEEccCCCC-----CCCccccccCCccceeecccccCCc-----Cccc
Q 008287 359 SLKKLIVETNDLE--E----LPHTIGQCSSLRELRVDYNRL-----KALPEAVGKIHTLEVLSVRYNNIKQ-----LPTT 422 (571)
Q Consensus 359 ~L~~L~L~~n~l~--~----l~~~l~~l~~L~~L~Ls~n~l-----~~l~~~l~~l~~L~~L~L~~n~i~~-----lp~~ 422 (571)
+|++|++++|.+. . ++..+..+++|++|++++|.+ ..++..+..+++|++|+|++|.+.. ++..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 9999999999988 2 333788999999999999999 4577788899999999999999986 3566
Q ss_pred c--CCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhc-cCCCCccEEecccCCCCccc---h-hhc
Q 008287 423 M--SSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSI-GNLEMLEELDISNNQIRVLP---D-SFR 495 (571)
Q Consensus 423 l--~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l-~~l~~L~~L~Ls~n~l~~lp---~-~l~ 495 (571)
+ +.+++|++|+|++|.++.. ++..+|..+ .++++|+.|+|++|+++... . ...
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~--------------------g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~ 327 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELD--------------------AVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHH--------------------HHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHH
T ss_pred HhhccCCCeEEEECcCCcCCHH--------------------HHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHH
Confidence 6 4489999999999998751 011233344 44677777777777776443 1 122
Q ss_pred CCCCCcEEEcccC
Q 008287 496 MLSRLRVLRVQEN 508 (571)
Q Consensus 496 ~l~~L~~L~L~~N 508 (571)
.++.++.+.+..+
T Consensus 328 ~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 328 VFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHTCCEECCC
T ss_pred HhhhcCcchhhhc
Confidence 3344444555443
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=3.6e-20 Score=203.09 Aligned_cols=176 Identities=28% Similarity=0.417 Sum_probs=133.5
Q ss_pred CCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCC
Q 008287 266 SSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSN 345 (571)
Q Consensus 266 ~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n 345 (571)
.+|+.|+|++|.+..+|..+ .++|++|+|++|.|+.+| ..+++|++|++++|.|+.+|. +.. +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 38889999999888887755 378899999998888887 457888888888888888876 554 8888888888
Q ss_pred CCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCC
Q 008287 346 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSS 425 (571)
Q Consensus 346 ~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~ 425 (571)
.++.+|. .+++|+.|++++|.++.+|. .+++|++|++++|+++.+|. +. ++|+.|+|++|.|+.+|. +..
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~ 200 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV 200 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC-
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH
Confidence 8888876 57788888888888887766 56778888888888877776 54 778888888888877776 443
Q ss_pred CCCc-------cEEEecCCCCCCCchhhhcCCCCcEEEccCCc
Q 008287 426 LSSL-------RELDVSFNELESVPESLCFATTLVKMNIGNNF 461 (571)
Q Consensus 426 l~~L-------~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~ 461 (571)
+| +.|+|++|.|+.+|..+..+++|+.|+|++|.
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp ---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred --hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 56 77777777777776666556666666666653
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=8.5e-20 Score=200.17 Aligned_cols=186 Identities=33% Similarity=0.463 Sum_probs=157.9
Q ss_pred CccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCC
Q 008287 290 SLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETND 369 (571)
Q Consensus 290 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~ 369 (571)
+|++|+|++|.++.+|..+ +++|++|+|++|.|+.+| ..+++|++|++++|.++.+|. +.. +|+.|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 8999999999999998766 378999999999999998 567999999999999999988 655 99999999999
Q ss_pred CCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcC
Q 008287 370 LEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFA 449 (571)
Q Consensus 370 l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~ 449 (571)
++.+|. .+++|+.|++++|+++.+|. .+++|++|+|++|.++.+|. +. ++|++|+|++|.|+.+|. +..
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~- 200 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV- 200 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC--
T ss_pred CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH-
Confidence 999887 68999999999999998887 57899999999999999888 65 899999999999998887 443
Q ss_pred CCC-------cEEEccCCccCCCccchhccCCCCccEEecccCCCC-ccchhhcCC
Q 008287 450 TTL-------VKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR-VLPDSFRML 497 (571)
Q Consensus 450 ~~L-------~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l 497 (571)
+| +.|+|++| .+..+|..+..+++|+.|+|++|.|+ .+|..+..+
T Consensus 201 -~L~~~~~~L~~L~Ls~N--~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCREN--RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp --------CCEEEECCSS--CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -hhhcccccceEEecCCC--cceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 67 88888888 45578888888888888888888887 445555443
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=3.8e-21 Score=200.12 Aligned_cols=235 Identities=19% Similarity=0.261 Sum_probs=169.6
Q ss_pred CCCCCcEEEecCCCCCCcc--ccccccCCCC-CCCEEEeeCCCCCcc-cchhcCC-----CCccEEEcccCCCCCcc-h-
Q 008287 238 SKKGTRDLNLQNKLMDNIE--WLPDSIGKLS-SLVSLDLSENRIVAV-PATIGGL-----SSLKKLDLHANRIIELP-D- 306 (571)
Q Consensus 238 ~~~~l~~L~L~~~~~~~~~--~l~~~~~~l~-~L~~L~Ls~n~i~~l-~~~l~~l-----~~L~~L~L~~n~l~~lp-~- 306 (571)
..++++.|+|++|.+.+.. .+...+..++ +|++|+|++|.+... +..+..+ ++|++|+|++|.++..+ .
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 3456999999999887654 1226778888 999999999999865 3344443 89999999999998543 3
Q ss_pred ---hhcCC-CCccEEEccCCCCCCCch-----hhcC-CCCCCEEEccCCCCC-----CCchhhcCCc-CCcEEeccCCCC
Q 008287 307 ---SIGDL-LSLVYLDLRGNQISALPV-----ALSR-LVRLEELDLGSNNLS-----SLPDSIGSLI-SLKKLIVETNDL 370 (571)
Q Consensus 307 ---~l~~l-~~L~~L~Ls~n~i~~lp~-----~l~~-l~~L~~L~Ls~n~l~-----~lp~~l~~l~-~L~~L~L~~n~l 370 (571)
.+..+ ++|++|++++|.++..+. .+.. .++|++|++++|.++ .++..+..++ +|++|++++|.+
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 25555 899999999999986543 2444 369999999999988 3444556665 899999999988
Q ss_pred CCCcc-----ccCCC-CCCcEEEccCCCCCC-----Ccccccc-CCccceeecccccCCcCc-----cccCCCCCccEEE
Q 008287 371 EELPH-----TIGQC-SSLRELRVDYNRLKA-----LPEAVGK-IHTLEVLSVRYNNIKQLP-----TTMSSLSSLRELD 433 (571)
Q Consensus 371 ~~l~~-----~l~~l-~~L~~L~Ls~n~l~~-----l~~~l~~-l~~L~~L~L~~n~i~~lp-----~~l~~l~~L~~L~ 433 (571)
+.... .+..+ ++|++|++++|.++. ++..+.. .++|++|+|++|.+.+.+ ..+..+++|++|+
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 75432 34455 588888888888875 4555554 347888888888877643 3456777888888
Q ss_pred ecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCc
Q 008287 434 VSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRV 489 (571)
Q Consensus 434 Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 489 (571)
|++|.+..+... .+..++..+..+++|+.|+|++|+|..
T Consensus 260 L~~n~l~~i~~~-----------------~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 260 LDYDIVKNMSKE-----------------QCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp EEHHHHTTCCHH-----------------HHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred eccCCccccCHH-----------------HHHHHHHHhccCCceEEEecCCCcCCC
Confidence 888875544322 123344556677788888888887774
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=2.4e-19 Score=176.72 Aligned_cols=177 Identities=27% Similarity=0.477 Sum_probs=110.9
Q ss_pred ccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCch-hhcCCcCCcEEeccCCCCCCCcc-ccCCCCCCcEEEccCC
Q 008287 314 LVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYN 391 (571)
Q Consensus 314 L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n 391 (571)
.++++++++.++.+|..+. ++++.|++++|.+..++. .+..+++|++|++++|.+..++. .+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4445555555555544333 345555555555554432 24445555555555555554432 3455566666666666
Q ss_pred CCCCCc-cccccCCccceeecccccCCcCcc-ccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccch
Q 008287 392 RLKALP-EAVGKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPR 469 (571)
Q Consensus 392 ~l~~l~-~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~ 469 (571)
+++.++ ..+..+++|++|+|++|.+..++. .+..+++|++|+|++|.++.++. .
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------------------~ 149 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA------------------------G 149 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------------T
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH------------------------H
Confidence 665544 334556666666666666666544 34566666666666666655432 2
Q ss_pred hccCCCCccEEecccCCCCccch-hhcCCCCCcEEEcccCCCCCCChH
Q 008287 470 SIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 470 ~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~ 516 (571)
.++.+++|+.|+|++|+|+.++. .+..+++|+.|+|++|++.|.+..
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 57788999999999999998875 789999999999999999998433
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=7.4e-21 Score=195.24 Aligned_cols=216 Identities=19% Similarity=0.256 Sum_probs=119.9
Q ss_pred CCEEEeeCCCCCcccchhcCC--CCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCC--CchhhcCCCCCCEEEcc
Q 008287 268 LVSLDLSENRIVAVPATIGGL--SSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISA--LPVALSRLVRLEELDLG 343 (571)
Q Consensus 268 L~~L~Ls~n~i~~l~~~l~~l--~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~--lp~~l~~l~~L~~L~Ls 343 (571)
++.++++++.+. +..+..+ ++++.|++++|.+...+..+..+++|++|++++|.+.. ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 556666666554 2333334 55666666666665544445556666666666666552 45555666666666666
Q ss_pred CCCCC-CCchhhcCCcCCcEEeccCC-CCC--CCccccCCCCCCcEEEccCC-CCCC--CccccccCC-ccceeeccccc
Q 008287 344 SNNLS-SLPDSIGSLISLKKLIVETN-DLE--ELPHTIGQCSSLRELRVDYN-RLKA--LPEAVGKIH-TLEVLSVRYNN 415 (571)
Q Consensus 344 ~n~l~-~lp~~l~~l~~L~~L~L~~n-~l~--~l~~~l~~l~~L~~L~Ls~n-~l~~--l~~~l~~l~-~L~~L~L~~n~ 415 (571)
+|.++ ..+..++.+++|++|++++| .++ .++..+..+++|++|++++| .++. ++..+..++ +|++|++++|.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 66555 34445556666666666666 444 24444555666666666666 5552 444555566 66666666663
Q ss_pred --CC--cCccccCCCCCccEEEecCCC-CC-CCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccC
Q 008287 416 --IK--QLPTTMSSLSSLRELDVSFNE-LE-SVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNN 485 (571)
Q Consensus 416 --i~--~lp~~l~~l~~L~~L~Ls~n~-l~-~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n 485 (571)
+. .++..+..+++|++|++++|. ++ ..+..+..+++|++|++++|..........+..+++|+.|+|++|
T Consensus 207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 32 244555556666666666665 43 334455556666666666653111111123455666666666666
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=9.1e-20 Score=183.94 Aligned_cols=169 Identities=23% Similarity=0.376 Sum_probs=76.0
Q ss_pred CCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccC
Q 008287 265 LSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGS 344 (571)
Q Consensus 265 l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~ 344 (571)
+++|+.|++++|.+..++. +..+++|++|+|++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|++++
T Consensus 45 l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH 121 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred cCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEECCC
Confidence 3444444444444444432 3444444444444444444433 444444444444444444433 244444444444444
Q ss_pred CCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccC
Q 008287 345 NNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMS 424 (571)
Q Consensus 345 n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~ 424 (571)
|.+..+ ..+..+++|+.|++++|.+..+ ..+..+++|++|++++|+++.++. +..+++|+.|++++|.+.+++. +.
T Consensus 122 n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~ 197 (291)
T 1h6t_A 122 NGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LA 197 (291)
T ss_dssp SCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GT
T ss_pred CcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hc
Confidence 444443 2344444444444444444443 334444444444444444444433 4444444444444444444432 44
Q ss_pred CCCCccEEEecCCCCC
Q 008287 425 SLSSLRELDVSFNELE 440 (571)
Q Consensus 425 ~l~~L~~L~Ls~n~l~ 440 (571)
.+++|+.|++++|.++
T Consensus 198 ~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 198 GLKNLDVLELFSQECL 213 (291)
T ss_dssp TCTTCSEEEEEEEEEE
T ss_pred cCCCCCEEECcCCccc
Confidence 4445555555544443
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=3e-19 Score=180.19 Aligned_cols=192 Identities=20% Similarity=0.320 Sum_probs=150.9
Q ss_pred CccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCC
Q 008287 290 SLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETND 369 (571)
Q Consensus 290 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~ 369 (571)
.+..+.+..+.+..+. .+..+++|++|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|+.|++++|.
T Consensus 25 ~~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred HHHHHHhcCCCccccc-chhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc
Confidence 3444556666666542 3456788999999999999886 58889999999999999998876 8889999999999999
Q ss_pred CCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcC
Q 008287 370 LEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFA 449 (571)
Q Consensus 370 l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~ 449 (571)
+..++. +..+++|++|++++|+++.++ .+..+++|+.|++++|.+.++ ..+..+++|++|++++|.++.++. +..+
T Consensus 102 l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l 177 (291)
T 1h6t_A 102 VKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGL 177 (291)
T ss_dssp CCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTC
T ss_pred CCCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCC
Confidence 888754 888899999999999988874 577888899999999988887 577888889999999888887765 6677
Q ss_pred CCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccc
Q 008287 450 TTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLP 491 (571)
Q Consensus 450 ~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 491 (571)
++|+.|++++| .+..++ .+..+++|+.|++++|+++..|
T Consensus 178 ~~L~~L~L~~N--~i~~l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 178 TKLQNLYLSKN--HISDLR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp TTCCEEECCSS--CCCBCG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred CccCEEECCCC--cCCCCh-hhccCCCCCEEECcCCcccCCc
Confidence 77777777777 344454 3667777777777777766544
No 94
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=1.2e-20 Score=208.81 Aligned_cols=275 Identities=17% Similarity=0.141 Sum_probs=139.6
Q ss_pred CCCCcEEEecCCCCCCc--cccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCC----CcchhhcCCC
Q 008287 239 KKGTRDLNLQNKLMDNI--EWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRII----ELPDSIGDLL 312 (571)
Q Consensus 239 ~~~l~~L~L~~~~~~~~--~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~----~lp~~l~~l~ 312 (571)
+++|+.|+++++.+.++ ..++..+..+++|++|++++|.+..++..+.++++|++|+++++... ..+..+..++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 34555555555544321 23334444555555555555555554444444555555555422110 1111222333
Q ss_pred CccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCC--CchhhcCCcC------------------------CcEEecc
Q 008287 313 SLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSS--LPDSIGSLIS------------------------LKKLIVE 366 (571)
Q Consensus 313 ~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~------------------------L~~L~L~ 366 (571)
+|+.|+++++....+|..+..+++|++|++++|.++. +...+..+++ |++|++.
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 3333333333333344444555555556555555431 1122344444 4444444
Q ss_pred C-----------CCCC--CCccccCCCCCCcEEEccCCCCCC-Cccccc-cCCccceeecc----cccCCcCc------c
Q 008287 367 T-----------NDLE--ELPHTIGQCSSLRELRVDYNRLKA-LPEAVG-KIHTLEVLSVR----YNNIKQLP------T 421 (571)
Q Consensus 367 ~-----------n~l~--~l~~~l~~l~~L~~L~Ls~n~l~~-l~~~l~-~l~~L~~L~L~----~n~i~~lp------~ 421 (571)
+ +.++ .++.....+++|++|++..|.++. .+..+. .+++|+.|+++ .|.+++.| .
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 1 2222 111122335555555555555542 112222 25566666664 34454422 2
Q ss_pred ccCCCCCccEEEecCCC--CCC-Cchhh-hcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCc--cchhhc
Q 008287 422 TMSSLSSLRELDVSFNE--LES-VPESL-CFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRV--LPDSFR 495 (571)
Q Consensus 422 ~l~~l~~L~~L~Ls~n~--l~~-i~~~l-~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~--lp~~l~ 495 (571)
.+.++++|++|+|++|. ++. .+..+ ..+++|+.|++++|......++..+..+++|+.|+|++|.|+. ++..+.
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence 24556677777775432 431 12222 3467788888887754433456666778888888888888763 445556
Q ss_pred CCCCCcEEEcccCCCCCC
Q 008287 496 MLSRLRVLRVQENPLEVP 513 (571)
Q Consensus 496 ~l~~L~~L~L~~N~l~~~ 513 (571)
.+++|+.|+|++|+++..
T Consensus 511 ~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HCSSCCEEEEESCBCCTT
T ss_pred hcCccCeeECcCCcCCHH
Confidence 788888888888887654
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=6e-19 Score=182.64 Aligned_cols=234 Identities=18% Similarity=0.273 Sum_probs=173.1
Q ss_pred cEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCC-cch-hhcCCCCccE-EE
Q 008287 243 RDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIE-LPD-SIGDLLSLVY-LD 318 (571)
Q Consensus 243 ~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~-lp~-~l~~l~~L~~-L~ 318 (571)
+.++.+++++.. +|..+ .+++++|+|++|+|+.+|. .|.++++|++|+|++|.+.. +|. .|.++++|++ +.
T Consensus 12 ~~v~C~~~~Lt~---iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVTE---IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCCS---CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCCc---cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 456667765554 45544 3688999999999998875 68889999999999998754 543 5678888765 55
Q ss_pred ccCCCCCCCc-hhhcCCCCCCEEEccCCCCCCCchh-hcCCcCCcEEeccC-CCCCCCcc-ccCCC-CCCcEEEccCCCC
Q 008287 319 LRGNQISALP-VALSRLVRLEELDLGSNNLSSLPDS-IGSLISLKKLIVET-NDLEELPH-TIGQC-SSLRELRVDYNRL 393 (571)
Q Consensus 319 Ls~n~i~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~-n~l~~l~~-~l~~l-~~L~~L~Ls~n~l 393 (571)
+..|++..++ ..+..+++|++|++++|.+..++.. +....++..|++.+ +.+..++. .+..+ ..++.|++++|++
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 6678888875 4678889999999999988877653 44566777787755 56666654 34444 4688899999999
Q ss_pred CCCccccccCCccceeeccc-ccCCcCcc-ccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhc
Q 008287 394 KALPEAVGKIHTLEVLSVRY-NNIKQLPT-TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSI 471 (571)
Q Consensus 394 ~~l~~~l~~l~~L~~L~L~~-n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l 471 (571)
+.++.......+|+.|++.+ |.+..+|. .+..+++|++|+|++|.|+.+|.. .+.+|++|.+.++. .+..+| .+
T Consensus 167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~-~l~~lP-~l 242 (350)
T 4ay9_X 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTY-NLKKLP-TL 242 (350)
T ss_dssp CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCT-TCCCCC-CT
T ss_pred cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCC-CcCcCC-Cc
Confidence 88877666677888888874 67788875 568888999999999999888763 35677777766553 456676 46
Q ss_pred cCCCCccEEecccC
Q 008287 472 GNLEMLEELDISNN 485 (571)
Q Consensus 472 ~~l~~L~~L~Ls~n 485 (571)
.++++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 77888888887654
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=8.3e-19 Score=172.77 Aligned_cols=173 Identities=29% Similarity=0.496 Sum_probs=110.9
Q ss_pred CCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcch-hhcCCCCccEEEccCCCCCCCch-hhcCCCCCCEEEccC
Q 008287 267 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGS 344 (571)
Q Consensus 267 ~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~ 344 (571)
..+.++++++.+..+|..+. +.|++|+|++|.+..++. .+..+++|++|+|++|.++.++. .+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34556666666666655433 456666666666665533 45666666666666666665543 356666666666666
Q ss_pred CCCCCCch-hhcCCcCCcEEeccCCCCCCCccc-cCCCCCCcEEEccCCCCCCCcc-ccccCCccceeecccccCCcCcc
Q 008287 345 NNLSSLPD-SIGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLKALPE-AVGKIHTLEVLSVRYNNIKQLPT 421 (571)
Q Consensus 345 n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~i~~lp~ 421 (571)
|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++|+++.++. .+..+++|++|+|++|.+..++.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 66665553 345666666666666666666543 4667777777777777776654 46667777777777777777654
Q ss_pred -ccCCCCCccEEEecCCCCCC
Q 008287 422 -TMSSLSSLRELDVSFNELES 441 (571)
Q Consensus 422 -~l~~l~~L~~L~Ls~n~l~~ 441 (571)
.+..+++|++|+|++|.+..
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCT
T ss_pred HHHhCCCCCCEEEeeCCceeC
Confidence 56677777777777777753
No 97
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=2.4e-20 Score=206.32 Aligned_cols=274 Identities=15% Similarity=0.083 Sum_probs=178.3
Q ss_pred CCCCCcEEEecCCCCCCc--cccccccCCCCCCCEEEeeCCCCC-----cccchhcCCCCccEEEcccCCCCCcchhhcC
Q 008287 238 SKKGTRDLNLQNKLMDNI--EWLPDSIGKLSSLVSLDLSENRIV-----AVPATIGGLSSLKKLDLHANRIIELPDSIGD 310 (571)
Q Consensus 238 ~~~~l~~L~L~~~~~~~~--~~l~~~~~~l~~L~~L~Ls~n~i~-----~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~ 310 (571)
.+++|+.|+|++|.+.+. .+++.....+++|++|++++|.+. .++..+.++++|++|+|++|.+..++..+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 456788888888765432 224455567788888888888775 2344556778888888888877777777777
Q ss_pred CCCccEEEccCCCCC----CCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCC--CccccCCCCCCc
Q 008287 311 LLSLVYLDLRGNQIS----ALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEE--LPHTIGQCSSLR 384 (571)
Q Consensus 311 l~~L~~L~Ls~n~i~----~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~--l~~~l~~l~~L~ 384 (571)
+++|++|+++.+... ..+..+..+++|+.|+++++....+|..+..+++|++|++++|.++. +...+..+++|+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 888888888753222 23345677788888888887666788888899999999999998652 222345555555
Q ss_pred EEEccC-----------------------------------CCCC--CCccccccCCccceeecccccCCc-CccccC-C
Q 008287 385 ELRVDY-----------------------------------NRLK--ALPEAVGKIHTLEVLSVRYNNIKQ-LPTTMS-S 425 (571)
Q Consensus 385 ~L~Ls~-----------------------------------n~l~--~l~~~l~~l~~L~~L~L~~n~i~~-lp~~l~-~ 425 (571)
+|++++ +.++ .+......+++|++|++..|.+++ .+..+. .
T Consensus 322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence 555542 2222 111222335556666665555544 122232 3
Q ss_pred CCCccEEEec----CCCCCCC------chhhhcCCCCcEEEccCCccCC--CccchhccCCCCccEEecccCCCCc--cc
Q 008287 426 LSSLRELDVS----FNELESV------PESLCFATTLVKMNIGNNFADL--RALPRSIGNLEMLEELDISNNQIRV--LP 491 (571)
Q Consensus 426 l~~L~~L~Ls----~n~l~~i------~~~l~~~~~L~~L~L~~n~~~l--~~lp~~l~~l~~L~~L~Ls~n~l~~--lp 491 (571)
+++|++|+++ .|.+++. +..+..+++|+.|++++|...+ ..+......+++|+.|+|++|+++. ++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 6677777775 5566643 2335567788888886543211 1122222458899999999999874 55
Q ss_pred hhhcCCCCCcEEEcccCCCC
Q 008287 492 DSFRMLSRLRVLRVQENPLE 511 (571)
Q Consensus 492 ~~l~~l~~L~~L~L~~N~l~ 511 (571)
..+..+++|+.|+|++|+++
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCB
T ss_pred HHHhcCcccCeeeccCCCCc
Confidence 66788999999999999974
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=1.8e-18 Score=179.02 Aligned_cols=230 Identities=18% Similarity=0.282 Sum_probs=98.7
Q ss_pred EEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcch-hhcCCCCccEEEccCCCCCC-Cch-hhcCCCCCCE-EEccCC
Q 008287 270 SLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISA-LPV-ALSRLVRLEE-LDLGSN 345 (571)
Q Consensus 270 ~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~i~~-lp~-~l~~l~~L~~-L~Ls~n 345 (571)
+++.++++++.+|..+ .+++++|+|++|+|+.+|. .|.++++|++|+|++|++.+ +|. .|.++++++. +.+.+|
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 3444444555444433 1344555555555554443 34445555555555554432 322 2344444433 333344
Q ss_pred CCCCCc-hhhcCCcCCcEEeccCCCCCCCcc-ccCCCCCCcEEEccC-CCCCCCcc-ccccC-CccceeecccccCCcCc
Q 008287 346 NLSSLP-DSIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDY-NRLKALPE-AVGKI-HTLEVLSVRYNNIKQLP 420 (571)
Q Consensus 346 ~l~~lp-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~-n~l~~l~~-~l~~l-~~L~~L~L~~n~i~~lp 420 (571)
++..++ ..+..+++|++|++++|.+..++. .+....++..|++.+ +++..++. .+..+ ..++.|++++|.+..++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 444442 234445555555555555444432 222333444444433 33333331 12222 23444555555555444
Q ss_pred cccCCCCCccEEEec-CCCCCCCchh-hhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccC-CCCccchhhcCC
Q 008287 421 TTMSSLSSLRELDVS-FNELESVPES-LCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNN-QIRVLPDSFRML 497 (571)
Q Consensus 421 ~~l~~l~~L~~L~Ls-~n~l~~i~~~-l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l 497 (571)
.......+|++|++. +|.++.+|.. +..+++|+.|++++| .+..+|. ..+.+|+.|.+.++ +++.+|. +..+
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N--~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~-l~~l 245 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT--RIHSLPS--YGLENLKKLRARSTYNLKKLPT-LEKL 245 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS--CCCCCCS--SSCTTCCEEECTTCTTCCCCCC-TTTC
T ss_pred hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC--CcCccCh--hhhccchHhhhccCCCcCcCCC-chhC
Confidence 443334445555553 2444444432 344455555555554 2333432 12333444443333 4444443 4444
Q ss_pred CCCcEEEcc
Q 008287 498 SRLRVLRVQ 506 (571)
Q Consensus 498 ~~L~~L~L~ 506 (571)
++|+.+++.
T Consensus 246 ~~L~~l~l~ 254 (350)
T 4ay9_X 246 VALMEASLT 254 (350)
T ss_dssp CSCCEEECS
T ss_pred cChhhCcCC
Confidence 555555443
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.1e-18 Score=193.24 Aligned_cols=171 Identities=25% Similarity=0.374 Sum_probs=100.1
Q ss_pred CCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEE
Q 008287 239 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLD 318 (571)
Q Consensus 239 ~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 318 (571)
+++|+.|++++|.+..+. .+..+++|+.|+|++|.+..++. +.++++|+.|+|++|.+..++ .+..+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT----TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCCh----HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 345566666666554432 34556666666666666665544 556666666666666666553 455666666666
Q ss_pred ccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCcc
Q 008287 319 LRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPE 398 (571)
Q Consensus 319 Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~ 398 (571)
|++|.+..++ .+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.+..+++ +..+++|+.|+|++|.++.++
T Consensus 116 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~- 191 (605)
T 1m9s_A 116 LEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR- 191 (605)
T ss_dssp CTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-
T ss_pred ecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-
Confidence 6666666553 455566666666666666655 345566666666666666655544 555666666666666665553
Q ss_pred ccccCCccceeecccccCCcC
Q 008287 399 AVGKIHTLEVLSVRYNNIKQL 419 (571)
Q Consensus 399 ~l~~l~~L~~L~L~~n~i~~l 419 (571)
.+..+++|+.|+|++|.+...
T Consensus 192 ~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GGTTCTTCSEEECCSEEEECC
T ss_pred HHccCCCCCEEEccCCcCcCC
Confidence 355556666666666655543
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.3e-18 Score=192.57 Aligned_cols=194 Identities=20% Similarity=0.311 Sum_probs=168.4
Q ss_pred CCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCC
Q 008287 289 SSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETN 368 (571)
Q Consensus 289 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 368 (571)
..+..+++..+.+..+.. +..+++|+.|++++|.|..++ .+..+++|+.|+|++|.+..++. +..+++|+.|+|++|
T Consensus 21 ~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC
Confidence 345556677777776633 567899999999999999987 68999999999999999998876 899999999999999
Q ss_pred CCCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhc
Q 008287 369 DLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCF 448 (571)
Q Consensus 369 ~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~ 448 (571)
.+..++ .+..+++|+.|+|++|.+..++ .+..+++|+.|+|++|.+..+ ..+..+++|++|+|++|.+..++. +..
T Consensus 98 ~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~ 173 (605)
T 1m9s_A 98 KIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAG 173 (605)
T ss_dssp CCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTT
T ss_pred CCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hcc
Confidence 999876 6899999999999999999885 578899999999999999998 678999999999999999998876 888
Q ss_pred CCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccch
Q 008287 449 ATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD 492 (571)
Q Consensus 449 ~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 492 (571)
+++|+.|+|++| .+..+| .+..+++|+.|+|++|++...|.
T Consensus 174 l~~L~~L~Ls~N--~i~~l~-~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 174 LTKLQNLYLSKN--HISDLR-ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CTTCCEEECCSS--CCCBCG-GGTTCTTCSEEECCSEEEECCCC
T ss_pred CCCCCEEECcCC--CCCCCh-HHccCCCCCEEEccCCcCcCCcc
Confidence 999999999998 445565 68889999999999998886653
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=4.4e-19 Score=176.23 Aligned_cols=164 Identities=24% Similarity=0.350 Sum_probs=74.5
Q ss_pred EEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCC
Q 008287 270 SLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSS 349 (571)
Q Consensus 270 ~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~ 349 (571)
.++++++.+.+++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.
T Consensus 23 ~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 23 KQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp HHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC
T ss_pred HHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC
Confidence 3334444444333 2333444444444444444443 34444444444444444444443 4444444444444444444
Q ss_pred CchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCCCCCc
Q 008287 350 LPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSL 429 (571)
Q Consensus 350 lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L 429 (571)
++.... ++|+.|++++|.+..++ .+..+++|+.|++++|+++.++ .+..+++|+.|++++|.+.++ ..+..+++|
T Consensus 100 l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L 174 (263)
T 1xeu_A 100 LNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKV 174 (263)
T ss_dssp CTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCC
T ss_pred cCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCC
Confidence 432111 44444444444444442 2444555555555555555443 344455555555555555544 344455555
Q ss_pred cEEEecCCCCCC
Q 008287 430 RELDVSFNELES 441 (571)
Q Consensus 430 ~~L~Ls~n~l~~ 441 (571)
+.|++++|.+..
T Consensus 175 ~~L~l~~N~~~~ 186 (263)
T 1xeu_A 175 NWIDLTGQKCVN 186 (263)
T ss_dssp CEEEEEEEEEEC
T ss_pred CEEeCCCCcccC
Confidence 555555555443
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1.1e-18 Score=173.45 Aligned_cols=172 Identities=23% Similarity=0.330 Sum_probs=95.7
Q ss_pred CCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccC
Q 008287 288 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVET 367 (571)
Q Consensus 288 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 367 (571)
+.++..++++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|+.|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 344555666666666654 4556666666666666666665 55666666666666666665554 55555555555555
Q ss_pred CCCCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhh
Q 008287 368 NDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLC 447 (571)
Q Consensus 368 n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~ 447 (571)
|.+..++.... ++|++|++++|+++.++ .+..+++|++|+|++|.+++++ .+.
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~l~~~~------------------------~l~~l~~L~~L~Ls~N~i~~~~-~l~ 147 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNELRDTD------------------------SLIHLKNLEILSIRNNKLKSIV-MLG 147 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSCCSBSG------------------------GGTTCTTCCEEECTTSCCCBCG-GGG
T ss_pred CccCCcCcccc--CcccEEEccCCccCCCh------------------------hhcCcccccEEECCCCcCCCCh-HHc
Confidence 55555433222 44555555555444442 2444445555555555544443 333
Q ss_pred cCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccch
Q 008287 448 FATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD 492 (571)
Q Consensus 448 ~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 492 (571)
.+++|+.|++++|. +..+ ..+..+++|+.|++++|.++..|.
T Consensus 148 ~l~~L~~L~L~~N~--i~~~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 148 FLSKLEVLDLHGNE--ITNT-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp GCTTCCEEECTTSC--CCBC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred cCCCCCEEECCCCc--Ccch-HHhccCCCCCEEeCCCCcccCCcc
Confidence 44444444444442 1222 356677888888888888876653
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=3e-17 Score=159.47 Aligned_cols=152 Identities=26% Similarity=0.402 Sum_probs=94.0
Q ss_pred EEeccCCCCCCCccccCCCCCCcEEEccCCCCCCC-ccccccCCccceeecccccCCcCcc-ccCCCCCccEEEecCCCC
Q 008287 362 KLIVETNDLEELPHTIGQCSSLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNEL 439 (571)
Q Consensus 362 ~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~Ls~n~l 439 (571)
.++++++.+..+|..+. ++|+.|++++|.++.+ +..+..+++|++|+|++|.+..++. .+..+++|++|+|++|.|
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 34444444444443322 4455555555555443 3344445555555555555555442 335555555555555555
Q ss_pred CCCchh-hhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccch-hhcCCCCCcEEEcccCCCCCCChHH
Q 008287 440 ESVPES-LCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRNI 517 (571)
Q Consensus 440 ~~i~~~-l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~ 517 (571)
+.++.. +..+++|+.|++++| .+..+|..+..+++|+.|+|++|+|+.++. .+..+++|+.|+|.+|++.|.|..+
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N--~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 178 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCN--KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI 178 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS--CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred CccChhHhCcchhhCeEeccCC--cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence 554433 344555555555555 234566677888999999999999998874 6899999999999999999998754
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=3e-17 Score=158.51 Aligned_cols=153 Identities=20% Similarity=0.401 Sum_probs=101.1
Q ss_pred CEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCcc-ccCCCCCCcEEEccCCCCCCC-ccccccCCccceeeccccc
Q 008287 338 EELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNN 415 (571)
Q Consensus 338 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~ 415 (571)
+.++++++.++.+|..+. ++|+.|++++|.+..++. .+..+++|+.|++++|+++.+ |..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 345555555555554332 345555555555554433 455556666666666666544 4455566666666666666
Q ss_pred CCcCccc-cCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccch-h
Q 008287 416 IKQLPTT-MSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-S 493 (571)
Q Consensus 416 i~~lp~~-l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~ 493 (571)
+..+|.. +..+++|++|+|++|.++.++ |..+..+++|+.|+|++|+|+.++. .
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~ 147 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLR------------------------VDAFQDLHNLNLLSLYDNKLQTIAKGT 147 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCC------------------------TTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeC------------------------HHHcCCCCCCCEEECCCCcCCEECHHH
Confidence 6665543 456666666666666665542 3467788999999999999998875 6
Q ss_pred hcCCCCCcEEEcccCCCCCCChH
Q 008287 494 FRMLSRLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 494 l~~l~~L~~L~L~~N~l~~~~~~ 516 (571)
|..+++|+.|+|++|+|.|.|..
T Consensus 148 ~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp TTTCTTCCEEECCSSCEECSGGG
T ss_pred HhCCCCCCEEEeCCCCcCCCCcc
Confidence 89999999999999999999863
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.4e-17 Score=157.78 Aligned_cols=149 Identities=16% Similarity=0.267 Sum_probs=81.1
Q ss_pred CCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCC-CchhhcCCCCCCEEE
Q 008287 263 GKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISA-LPVALSRLVRLEELD 341 (571)
Q Consensus 263 ~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~-lp~~l~~l~~L~~L~ 341 (571)
..+++|+.|++++|.+..++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.++. .+..+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 45566777777777777666 4666667777777776655553 45666666666666666664 344555666666666
Q ss_pred ccCCCCCC-CchhhcCCcCCcEEeccCCC-CCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeeccccc
Q 008287 342 LGSNNLSS-LPDSIGSLISLKKLIVETND-LEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNN 415 (571)
Q Consensus 342 Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~ 415 (571)
+++|.++. .+..+..+++|++|++++|. +..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 66665553 33444555555555555554 44443 3444444444444444444333 33333444444444443
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.7e-17 Score=172.52 Aligned_cols=179 Identities=28% Similarity=0.384 Sum_probs=134.7
Q ss_pred cEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchh-hc-CCcCCcEEeccCCCCCCCcc-ccCCCCCCcEEEccCC
Q 008287 315 VYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDS-IG-SLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYN 391 (571)
Q Consensus 315 ~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~-~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n 391 (571)
+.++++++.++.+|..+. ..++.|+|++|.++.++.. +. .+++|+.|++++|.+..++. .+..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 578888888888886554 4578888888888877654 44 77888888888888877653 5777888888888888
Q ss_pred CCCCCcc-ccccCCccceeecccccCCcC-ccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccch
Q 008287 392 RLKALPE-AVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPR 469 (571)
Q Consensus 392 ~l~~l~~-~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~ 469 (571)
+++.++. .+..+++|++|+|++|.+..+ +..+..+++|++|+|++|.|+.+|..+. .
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~---------------------~ 157 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI---------------------K 157 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT---------------------C
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh---------------------c
Confidence 8876653 567777888888888877775 4567777788888888887776654321 0
Q ss_pred hccCCCCccEEecccCCCCccc-hhhcCCCC--CcEEEcccCCCCCCChH
Q 008287 470 SIGNLEMLEELDISNNQIRVLP-DSFRMLSR--LRVLRVQENPLEVPPRN 516 (571)
Q Consensus 470 ~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~--L~~L~L~~N~l~~~~~~ 516 (571)
.+..+++|+.|+|++|+|+.+| ..+..++. |+.|+|.+|||.|+|..
T Consensus 158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp ----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 1256889999999999999987 46788887 48999999999999864
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=1.8e-20 Score=206.23 Aligned_cols=120 Identities=21% Similarity=0.259 Sum_probs=85.8
Q ss_pred CCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCc
Q 008287 382 SLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNF 461 (571)
Q Consensus 382 ~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~ 461 (571)
.|+.|++++|+++.+|. +..+++|+.|+|++|.+..+|..++.+++|+.|+|++|.|+.+| .+..+++|+.|+|++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 46777777777777765 67777777777777777777777777777777777777777766 66667777777777763
Q ss_pred cCCCcc--chhccCCCCccEEecccCCCCccchh----hcCCCCCcEEEc
Q 008287 462 ADLRAL--PRSIGNLEMLEELDISNNQIRVLPDS----FRMLSRLRVLRV 505 (571)
Q Consensus 462 ~~l~~l--p~~l~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L~~L~L 505 (571)
+..+ |..++.+++|+.|+|++|+|+.+|+. +..+++|+.|++
T Consensus 520 --l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 --LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp --CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred --CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 3344 67778888888888888888876542 344788888764
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.6e-17 Score=157.44 Aligned_cols=147 Identities=18% Similarity=0.287 Sum_probs=90.8
Q ss_pred CCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCC-cchhhcCCCCccEEEc
Q 008287 241 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIE-LPDSIGDLLSLVYLDL 319 (571)
Q Consensus 241 ~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L 319 (571)
+++.|++++|.+..+ | .+..+++|++|++++|.+..++ .+.++++|++|++++|.++. .+..+..+++|++|++
T Consensus 45 ~L~~L~l~~n~i~~l---~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 45 SLTYITLANINVTDL---T-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp TCCEEEEESSCCSCC---T-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CccEEeccCCCccCh---H-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 566666666655533 3 3556666666666666655543 35666666666666666664 3455666666666666
Q ss_pred cCCCCCC-CchhhcCCCCCCEEEccCCC-CCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCC
Q 008287 320 RGNQISA-LPVALSRLVRLEELDLGSNN-LSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK 394 (571)
Q Consensus 320 s~n~i~~-lp~~l~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~ 394 (571)
++|.++. .+..+..+++|++|++++|. +..++ .+..+++|+.|++++|.+..++ .+..+++|++|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 6666664 44556666666666666665 66664 4666666666666666666654 5666666666666666654
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=5.7e-20 Score=202.16 Aligned_cols=179 Identities=18% Similarity=0.247 Sum_probs=106.7
Q ss_pred CCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCC-------------CC-CcchhhcCCCCccEEE-ccCCCCCCC
Q 008287 263 GKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANR-------------II-ELPDSIGDLLSLVYLD-LRGNQISAL 327 (571)
Q Consensus 263 ~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~-------------l~-~lp~~l~~l~~L~~L~-Ls~n~i~~l 327 (571)
..+++|+.|+|++|.+..+|..++++++|+.|++++|. +. .+|..++.+++|+.|+ ++.|.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 56778888888888888888888888888888876553 22 3345566666666666 454433322
Q ss_pred ch------hhcC--CCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccc
Q 008287 328 PV------ALSR--LVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA 399 (571)
Q Consensus 328 p~------~l~~--l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~ 399 (571)
+. .+.. ...|+.|++++|.++.+|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|+++.+| .
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~ 503 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G 503 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-G
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-c
Confidence 21 0100 1235566666666665554 55566666666666666655555556666666666666665555 4
Q ss_pred cccCCccceeecccccCCcC--ccccCCCCCccEEEecCCCCCCCc
Q 008287 400 VGKIHTLEVLSVRYNNIKQL--PTTMSSLSSLRELDVSFNELESVP 443 (571)
Q Consensus 400 l~~l~~L~~L~L~~n~i~~l--p~~l~~l~~L~~L~Ls~n~l~~i~ 443 (571)
+..+++|++|+|++|.+.++ |..+..+++|+.|+|++|.++.+|
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 55555666666666655554 555555566666666665555443
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=5.5e-17 Score=154.85 Aligned_cols=176 Identities=28% Similarity=0.409 Sum_probs=93.5
Q ss_pred cEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCch-hhcCCCCCCEEEccCCCCCCCchh-hcCCcCCcEEeccCCC
Q 008287 292 KKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSLPDS-IGSLISLKKLIVETND 369 (571)
Q Consensus 292 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~ 369 (571)
+.++.+++.++.+|..+ .++|++|++++|+++.++. .+..+++|++|++++|.+..++.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45556666666665443 3466666666666665554 345666666666666666655443 3455555555555555
Q ss_pred CCCCccc-cCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchh-hh
Q 008287 370 LEELPHT-IGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPES-LC 447 (571)
Q Consensus 370 l~~l~~~-l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~-l~ 447 (571)
++.++.. +..+++|++|++++|+++.++.. .+..+++|++|+|++|.++.++.. +.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDG----------------------VFDKLTQLKDLRLYQNQLKSVPDGVFD 145 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------------------TTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHh----------------------HhccCCcCCEEECCCCccceeCHHHhc
Confidence 5544432 34455555555555555444322 234444555555555554444332 33
Q ss_pred cCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCC-ccchhhcCCCC
Q 008287 448 FATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR-VLPDSFRMLSR 499 (571)
Q Consensus 448 ~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~ 499 (571)
.+++|+.|++++|. +.+.+++|+.|+++.|+++ .+|..++.++.
T Consensus 146 ~l~~L~~L~l~~N~--------~~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 146 RLTSLQYIWLHDNP--------WDCTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TCTTCCEEECCSCC--------BCCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cCCCccEEEecCCC--------eecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 44455555555441 2234566777777777666 56666655543
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=9.2e-17 Score=155.06 Aligned_cols=153 Identities=21% Similarity=0.321 Sum_probs=98.5
Q ss_pred CEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCcc--ccCCCCCCcEEEccCCCCCCCcc-ccccCCccceeecccc
Q 008287 338 EELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPH--TIGQCSSLRELRVDYNRLKALPE-AVGKIHTLEVLSVRYN 414 (571)
Q Consensus 338 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n 414 (571)
+.+++++|.++.+|..+. ..++.|++++|.+..++. .+..+++|++|++++|+++.++. .+..+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 466666666666665432 234556666665555422 24555555555555555554432 4455555555555555
Q ss_pred cCCcCcc-ccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCcc-ch
Q 008287 415 NIKQLPT-TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVL-PD 492 (571)
Q Consensus 415 ~i~~lp~-~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~ 492 (571)
.+..++. .+..+++|++|+|++|.++.+ .|..+..+++|+.|+|++|+|+.+ |.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCV------------------------GNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCB------------------------CTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeE------------------------CHhHcCCCccCCEEECCCCcCCEECHH
Confidence 5555432 345555555555555555433 245678899999999999999988 67
Q ss_pred hhcCCCCCcEEEcccCCCCCCChH
Q 008287 493 SFRMLSRLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 493 ~l~~l~~L~~L~L~~N~l~~~~~~ 516 (571)
.|..+++|+.|+|++|+|.|.|..
T Consensus 148 ~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TTTTCTTCCEEECCSCCEECSGGG
T ss_pred HhcCCCCCCEEEecCcCCcCCCch
Confidence 899999999999999999999874
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.4e-16 Score=151.96 Aligned_cols=173 Identities=29% Similarity=0.442 Sum_probs=108.0
Q ss_pred EEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCcch-hhcCCCCccEEEccC
Q 008287 244 DLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRG 321 (571)
Q Consensus 244 ~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~ 321 (571)
.++..++++..+ |..+ .++|++|++++|.+..++. .+.++++|++|+|++|+++.++. .+..+++|++|++++
T Consensus 11 ~v~c~~~~l~~~---p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 11 TVECYSQGRTSV---PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEECCSSCCSSC---CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEecCCCccCC---CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 445555544332 3222 3567777777777776654 45677777777777777776654 346677777777777
Q ss_pred CCCCCCch-hhcCCCCCCEEEccCCCCCCCchh-hcCCcCCcEEeccCCCCCCCccc-cCCCCCCcEEEccCCCCCCCcc
Q 008287 322 NQISALPV-ALSRLVRLEELDLGSNNLSSLPDS-IGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLKALPE 398 (571)
Q Consensus 322 n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~l~~ 398 (571)
|.++.++. .+..+++|++|++++|.++.++.. +..+++|+.|++++|.++.++.. +..+++|++|++++|.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence 77776654 356677777777777777766544 56666777777777766666543 566667777777666443
Q ss_pred ccccCCccceeecccccCCc-CccccCCCC
Q 008287 399 AVGKIHTLEVLSVRYNNIKQ-LPTTMSSLS 427 (571)
Q Consensus 399 ~l~~l~~L~~L~L~~n~i~~-lp~~l~~l~ 427 (571)
..+++|+.|+++.|.+.+ +|..++.++
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred --cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 234556666666666654 555554443
No 113
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=1e-18 Score=193.22 Aligned_cols=130 Identities=12% Similarity=0.122 Sum_probs=78.7
Q ss_pred CCCCcEEEccCCCCCCC--ccccccCCccceeecc--c----ccCCcC------ccccCCCCCccEEEecCCCCCC-Cch
Q 008287 380 CSSLRELRVDYNRLKAL--PEAVGKIHTLEVLSVR--Y----NNIKQL------PTTMSSLSSLRELDVSFNELES-VPE 444 (571)
Q Consensus 380 l~~L~~L~Ls~n~l~~l--~~~l~~l~~L~~L~L~--~----n~i~~l------p~~l~~l~~L~~L~Ls~n~l~~-i~~ 444 (571)
+++|++|.+..|.++.. ......+++|+.|+++ + +.++.. +..+..+++|++|+|++ .++. ...
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 55666666655555421 1112246677777777 3 344432 22355667777777766 4442 222
Q ss_pred hhh-cCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCcc--chhhcCCCCCcEEEcccCCC
Q 008287 445 SLC-FATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVL--PDSFRMLSRLRVLRVQENPL 510 (571)
Q Consensus 445 ~l~-~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~L~~N~l 510 (571)
.+. .+++|+.|++++|......++.....+++|+.|+|++|.++.. ......+++|+.|+|++|++
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 333 3778888888887533223332235688888899988888632 23455678889999998887
No 114
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=1.8e-18 Score=191.10 Aligned_cols=267 Identities=21% Similarity=0.177 Sum_probs=158.1
Q ss_pred CCCCcEEEecCC-CCCCccccccccCCCCCCCEEEeeCCCCCc-----ccchhcCCCCccEEEcccCC--CC--Ccchhh
Q 008287 239 KKGTRDLNLQNK-LMDNIEWLPDSIGKLSSLVSLDLSENRIVA-----VPATIGGLSSLKKLDLHANR--II--ELPDSI 308 (571)
Q Consensus 239 ~~~l~~L~L~~~-~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~-----l~~~l~~l~~L~~L~L~~n~--l~--~lp~~l 308 (571)
+++|+.|+|.+| .+.. ..++..+..+++|++|+|++|.+.. ++.....+++|++|++++|. +. .++..+
T Consensus 129 ~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFST-DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp CTTCCEEEEESCEEEEH-HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCH-HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 456666666666 2222 1233444456666677666666443 22223355666666666665 22 122222
Q ss_pred cCCCCccEEEccCC-CCCCCchhhcCCCCCCEEEccCCC-------CCCCchhhcCCcCCcEE-eccCCCCCCCccccCC
Q 008287 309 GDLLSLVYLDLRGN-QISALPVALSRLVRLEELDLGSNN-------LSSLPDSIGSLISLKKL-IVETNDLEELPHTIGQ 379 (571)
Q Consensus 309 ~~l~~L~~L~Ls~n-~i~~lp~~l~~l~~L~~L~Ls~n~-------l~~lp~~l~~l~~L~~L-~L~~n~l~~l~~~l~~ 379 (571)
..+++|++|++++| .+..++..+..+++|++|+++.+. +..++..+..+++|+.| .+.+.....++..+..
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~ 287 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence 34566677776666 333455556666666766655442 12334456666677766 3443333345555556
Q ss_pred CCCCcEEEccCCCCCC--CccccccCCccceeecccccCCc--CccccCCCCCccEEEecC---------CCCCC--Cch
Q 008287 380 CSSLRELRVDYNRLKA--LPEAVGKIHTLEVLSVRYNNIKQ--LPTTMSSLSSLRELDVSF---------NELES--VPE 444 (571)
Q Consensus 380 l~~L~~L~Ls~n~l~~--l~~~l~~l~~L~~L~L~~n~i~~--lp~~l~~l~~L~~L~Ls~---------n~l~~--i~~ 444 (571)
+++|++|++++|.++. +...+..+++|++|++++| +.. ++.....+++|++|+|.+ +.++. +..
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 7889999998888662 3344567888999999888 432 333344678899998833 44542 222
Q ss_pred hhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecc--c----CCCCccc------hhhcCCCCCcEEEccc
Q 008287 445 SLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDIS--N----NQIRVLP------DSFRMLSRLRVLRVQE 507 (571)
Q Consensus 445 ~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls--~----n~l~~lp------~~l~~l~~L~~L~L~~ 507 (571)
....+++|+.|.+..+......+......+++|+.|+|+ + ++++..| ..+..+++|+.|+|++
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 233578899997766643322222222358899999998 4 5777443 2367788999999976
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=1.2e-16 Score=166.15 Aligned_cols=150 Identities=28% Similarity=0.383 Sum_probs=76.9
Q ss_pred cEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccc-hhc-CCCCccEEEcccCCCCCcc-hhhcCCCCccEEEc
Q 008287 243 RDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIG-GLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDL 319 (571)
Q Consensus 243 ~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~-~l~-~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L 319 (571)
+.++++++.+.. +|..+. +.++.|+|++|.|+.++. .+. ++++|++|+|++|.|+.++ ..|..+++|++|+|
T Consensus 21 ~~l~c~~~~l~~---iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPN---VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSS---CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCc---cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 345555554433 233222 345566666666655543 233 5556666666666665553 24555566666666
Q ss_pred cCCCCCCCch-hhcCCCCCCEEEccCCCCCCC-chhhcCCcCCcEEeccCCCCCCCcccc----CCCCCCcEEEccCCCC
Q 008287 320 RGNQISALPV-ALSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETNDLEELPHTI----GQCSSLRELRVDYNRL 393 (571)
Q Consensus 320 s~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~l~~~l----~~l~~L~~L~Ls~n~l 393 (571)
++|+|+.++. .+..+++|++|+|++|.+..+ +..+..+++|+.|++++|.+..+|..+ ..+++|+.|+|++|++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 6666555443 345555555555555555544 233555555555555555555554432 3345555555555555
Q ss_pred CCCc
Q 008287 394 KALP 397 (571)
Q Consensus 394 ~~l~ 397 (571)
+.++
T Consensus 176 ~~l~ 179 (361)
T 2xot_A 176 KKLP 179 (361)
T ss_dssp CCCC
T ss_pred CccC
Confidence 5443
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=5.1e-16 Score=150.72 Aligned_cols=149 Identities=34% Similarity=0.500 Sum_probs=81.2
Q ss_pred CCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCc-chhhcCCCCccEEEccCCCCCCCch-hhcCCCCCCEEEccCC
Q 008287 268 LVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSN 345 (571)
Q Consensus 268 L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n 345 (571)
.+.++++++.+..+|..+. ++|++|+|++|.++.+ |..+..+++|++|+|++|+|+.+|. .+..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3455666666665554332 5556666666655544 3345555555555555555555543 2345555555555555
Q ss_pred CCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCc-cccC
Q 008287 346 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLP-TTMS 424 (571)
Q Consensus 346 ~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~ 424 (571)
.++.++.. .+..+++|++|++++|+++.+|..+..+++|++|+|++|.+..++ ..+.
T Consensus 99 ~l~~l~~~----------------------~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 156 (229)
T 3e6j_A 99 QLTVLPSA----------------------VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156 (229)
T ss_dssp CCCCCCTT----------------------TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTT
T ss_pred cCCccChh----------------------HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHh
Confidence 55544332 234455555555555555555555555556666666666665554 2455
Q ss_pred CCCCccEEEecCCCCC
Q 008287 425 SLSSLRELDVSFNELE 440 (571)
Q Consensus 425 ~l~~L~~L~Ls~n~l~ 440 (571)
.+++|++|+|++|.+.
T Consensus 157 ~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 157 RLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TCTTCCEEECTTSCBC
T ss_pred CCCCCCEEEeeCCCcc
Confidence 5666666666666654
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=5.7e-16 Score=149.46 Aligned_cols=148 Identities=26% Similarity=0.413 Sum_probs=78.1
Q ss_pred CEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcch-hhcCCCCccEEEccCCCCCCC-chhhcCCCCCCEEEccCCC
Q 008287 269 VSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISAL-PVALSRLVRLEELDLGSNN 346 (571)
Q Consensus 269 ~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~i~~l-p~~l~~l~~L~~L~Ls~n~ 346 (571)
+.++++++.++.+|..+. ++|+.|+|++|.|+.++. .+..+++|++|+|++|.|+.+ |..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 455666666666654332 456666666666655533 455555666666666655544 3345555555555555555
Q ss_pred CCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCC-ccccccCCccceeecccccCCcCcc-ccC
Q 008287 347 LSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNNIKQLPT-TMS 424 (571)
Q Consensus 347 l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~lp~-~l~ 424 (571)
++.+|.. .+..+++|+.|++++|+++.+ +..+..+++|++|+|++|.+..++. .+.
T Consensus 92 l~~l~~~----------------------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 149 (220)
T 2v9t_B 92 ITELPKS----------------------LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149 (220)
T ss_dssp CCCCCTT----------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCccCHh----------------------HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh
Confidence 5554433 123444444444444444433 2344455555555555555555433 355
Q ss_pred CCCCccEEEecCCCCC
Q 008287 425 SLSSLRELDVSFNELE 440 (571)
Q Consensus 425 ~l~~L~~L~Ls~n~l~ 440 (571)
.+++|++|+|++|.+.
T Consensus 150 ~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 150 PLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred CCCCCCEEEeCCCCcC
Confidence 5566666666666553
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.66 E-value=6.8e-16 Score=148.94 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=31.4
Q ss_pred EEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcc--hhhcCCCCccEEEccCCCCCCCch-hhcCCCCCCEEEccCCC
Q 008287 270 SLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELP--DSIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNN 346 (571)
Q Consensus 270 ~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~ 346 (571)
.+++++|.++.+|..+. ..+++|+|++|.++.++ ..+..+++|++|+|++|.|+.++. .+..+++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 34444444444443221 22344444444444331 123444444444444444443332 33444444444444444
Q ss_pred CCC
Q 008287 347 LSS 349 (571)
Q Consensus 347 l~~ 349 (571)
++.
T Consensus 93 l~~ 95 (220)
T 2v70_A 93 LEN 95 (220)
T ss_dssp CCC
T ss_pred cCc
Confidence 443
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=7.2e-16 Score=141.88 Aligned_cols=109 Identities=28% Similarity=0.382 Sum_probs=43.9
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCC-cchhhcCCCCccEEE
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIE-LPDSIGDLLSLVYLD 318 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~ 318 (571)
++++.|++++|.+.. ..+|..+..+++|++|++++|.+..+ ..+.++++|++|+|++|.++. +|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~-~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBT-TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCCh-hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 344444444443321 02233334444444444444444433 333444444444444444443 333333344444444
Q ss_pred ccCCCCCCCc--hhhcCCCCCCEEEccCCCCCCC
Q 008287 319 LRGNQISALP--VALSRLVRLEELDLGSNNLSSL 350 (571)
Q Consensus 319 Ls~n~i~~lp--~~l~~l~~L~~L~Ls~n~l~~l 350 (571)
+++|.++.++ ..+..+++|++|++++|.++.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence 4444444333 2333344444444444443333
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=9.3e-17 Score=181.78 Aligned_cols=153 Identities=25% Similarity=0.284 Sum_probs=67.9
Q ss_pred CCCCEEEeeCCCCCcccchhcCCCCccEEE-----cccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCEE
Q 008287 266 SSLVSLDLSENRIVAVPATIGGLSSLKKLD-----LHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEEL 340 (571)
Q Consensus 266 ~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~-----L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~L 340 (571)
+.++.|+|.+|.+...+..+.....|..+. +..|.+...+..+..+++|+.|+|++|.+..+|..+..+++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 567888888888877654332222232222 222333333445556666666666666666666555566666666
Q ss_pred EccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCc
Q 008287 341 DLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQ 418 (571)
Q Consensus 341 ~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~ 418 (571)
+|++|.++.+|..|+.+++|+.|+|++|.++.+|..++.+++|++|+|++|.++.+|..+..+++|++|+|++|.+.+
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 666666666666566666666666666666666666666666666666666666665555566666666666666554
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=9.5e-17 Score=181.72 Aligned_cols=189 Identities=26% Similarity=0.296 Sum_probs=120.9
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEE-----EeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCc
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSL-----DLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSL 314 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L-----~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L 314 (571)
+.++.|+|.++.+... +..+.....|..+ ++..|.+...+..+..+..|+.|+|++|.+..+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~---~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA---NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc---hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 4578889988866553 3333333333333 3344445545667899999999999999999999988899999
Q ss_pred cEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCC
Q 008287 315 VYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK 394 (571)
Q Consensus 315 ~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~ 394 (571)
++|+|++|.|+.+|..+..+++|++|+|++|.++.+|..++.+++|++|+|++|.+..+|..|+.+++|+.|+|++|.++
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-ccccccCC-ccceeecccccCCc-CccccCCCCCccEEEecCC
Q 008287 395 AL-PEAVGKIH-TLEVLSVRYNNIKQ-LPTTMSSLSSLRELDVSFN 437 (571)
Q Consensus 395 ~l-~~~l~~l~-~L~~L~L~~n~i~~-lp~~l~~l~~L~~L~Ls~n 437 (571)
.. |..+..+. .+..|+|++|.+.. +| ..|..|++++|
T Consensus 330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 330 KQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred CCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 54 45444332 22347889998876 33 34566777766
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.1e-15 Score=140.54 Aligned_cols=131 Identities=20% Similarity=0.221 Sum_probs=73.3
Q ss_pred CCCCCEEEeeCCCCC--cccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCC-CchhhcCCCCCCEEE
Q 008287 265 LSSLVSLDLSENRIV--AVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISA-LPVALSRLVRLEELD 341 (571)
Q Consensus 265 l~~L~~L~Ls~n~i~--~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~-lp~~l~~l~~L~~L~ 341 (571)
.++|+.|++++|.+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 356666666666665 5555556666666666666666655 455566666666666666665 444455556666666
Q ss_pred ccCCCCCCCc--hhhcCCcCCcEEeccCCCCCCCcc----ccCCCCCCcEEEccCCCCCCC
Q 008287 342 LGSNNLSSLP--DSIGSLISLKKLIVETNDLEELPH----TIGQCSSLRELRVDYNRLKAL 396 (571)
Q Consensus 342 Ls~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~l~~----~l~~l~~L~~L~Ls~n~l~~l 396 (571)
+++|.++.++ ..+..+++|+.|++++|.+..++. .+..+++|++|++++|.+..+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 6666655554 344455555555555555444443 344444444444444444433
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=8.5e-15 Score=138.24 Aligned_cols=129 Identities=29% Similarity=0.482 Sum_probs=91.6
Q ss_pred EEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCc-cccCCCCCccEEEecCCCCC
Q 008287 362 KLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELE 440 (571)
Q Consensus 362 ~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~Ls~n~l~ 440 (571)
.+++++|.++.+|..+. ++|++|++++|.++.+|..+..+++|++|+|++|.+..++ ..|.++++|++|+|++|.|+
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 44555555555554332 3566666666666666666666666666666666666654 34666677777777777666
Q ss_pred CCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccch-hhcCCCCCcEEEcccCCCCCCChH
Q 008287 441 SVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 441 ~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~ 516 (571)
.++ |..+..+++|+.|+|++|+|+.+|. .|..+++|+.|+|++|+|.|+|..
T Consensus 92 ~i~------------------------~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 92 CIP------------------------PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp BCC------------------------TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred EeC------------------------HHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 553 2357788999999999999999886 688999999999999999999863
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=4.7e-15 Score=133.50 Aligned_cols=108 Identities=28% Similarity=0.353 Sum_probs=45.1
Q ss_pred CCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCC-cchhhcCCCCccEEEc
Q 008287 241 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIE-LPDSIGDLLSLVYLDL 319 (571)
Q Consensus 241 ~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L 319 (571)
+++.|++++|.+.. +.+|..+..+++|++|++++|.+..+ ..+.++++|++|++++|.++. +|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBT-TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCCh-hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 44444444443331 12233344444444444444444443 334444444444444444443 3333333444444444
Q ss_pred cCCCCCCCc--hhhcCCCCCCEEEccCCCCCCC
Q 008287 320 RGNQISALP--VALSRLVRLEELDLGSNNLSSL 350 (571)
Q Consensus 320 s~n~i~~lp--~~l~~l~~L~~L~Ls~n~l~~l 350 (571)
++|.++.++ ..+..+++|++|++++|.++.+
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 444444432 3344444444444444444433
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=2.3e-14 Score=135.03 Aligned_cols=130 Identities=24% Similarity=0.409 Sum_probs=94.1
Q ss_pred cEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCcc--ccccCCccceeecccccCCcC-ccccCCCCCccEEEecCC
Q 008287 361 KKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPE--AVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFN 437 (571)
Q Consensus 361 ~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~--~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~Ls~n 437 (571)
+.|++++|.++.+|..+.. +|++|++++|+++.++. .+..+++|++|+|++|.+.++ |..+.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5666667766666665433 66677777776666553 256666666666666666664 455666666666666666
Q ss_pred CCCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCcc-chhhcCCCCCcEEEcccCCCCCCChH
Q 008287 438 ELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVL-PDSFRMLSRLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 438 ~l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~ 516 (571)
.|+.++ +..+..+++|+.|+|++|+|+.+ |..+..+++|+.|+|++|+|.|.|..
T Consensus 89 ~l~~~~------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 89 KIKEIS------------------------NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCCEEC------------------------SSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred cCCccC------------------------HHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 665443 23477889999999999999976 67899999999999999999998863
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=5.6e-15 Score=137.13 Aligned_cols=86 Identities=28% Similarity=0.276 Sum_probs=34.2
Q ss_pred CCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhh-cCCCCCCEEEcc
Q 008287 265 LSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVAL-SRLVRLEELDLG 343 (571)
Q Consensus 265 l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l-~~l~~L~~L~Ls 343 (571)
+.+|+.|++++|.+..++......++|++|+|++|.++.+ ..+..+++|++|++++|.|+.+|..+ ..+++|++|+++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 3444444444444443332111112444444444444433 23344444444444444444433222 334444444444
Q ss_pred CCCCCCCc
Q 008287 344 SNNLSSLP 351 (571)
Q Consensus 344 ~n~l~~lp 351 (571)
+|.+..+|
T Consensus 97 ~N~i~~~~ 104 (176)
T 1a9n_A 97 NNSLVELG 104 (176)
T ss_dssp SCCCCCGG
T ss_pred CCcCCcch
Confidence 44444333
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=8.8e-15 Score=131.71 Aligned_cols=122 Identities=21% Similarity=0.256 Sum_probs=71.4
Q ss_pred CCCCEEEeeCCCCC--cccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCC-CchhhcCCCCCCEEEc
Q 008287 266 SSLVSLDLSENRIV--AVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISA-LPVALSRLVRLEELDL 342 (571)
Q Consensus 266 ~~L~~L~Ls~n~i~--~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~-lp~~l~~l~~L~~L~L 342 (571)
++|+.|++++|.+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 56666666666666 5555556666666666666666655 555666666666666666665 5555555666666666
Q ss_pred cCCCCCCCc--hhhcCCcCCcEEeccCCCCCCCcc----ccCCCCCCcEEEc
Q 008287 343 GSNNLSSLP--DSIGSLISLKKLIVETNDLEELPH----TIGQCSSLRELRV 388 (571)
Q Consensus 343 s~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~l~~----~l~~l~~L~~L~L 388 (571)
++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|+.|++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 666666543 445555555555555555554433 3444455555444
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=2e-14 Score=133.37 Aligned_cols=132 Identities=21% Similarity=0.261 Sum_probs=94.5
Q ss_pred cCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhh-hcCCCCcEE
Q 008287 377 IGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESL-CFATTLVKM 455 (571)
Q Consensus 377 l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l-~~~~~L~~L 455 (571)
+..+.+|++|++++|+++.++......++|++|++++|.+.++ ..+..+++|++|+|++|.++.+|..+ ..+++|+.|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4456666777777776666644333333677777777777666 56666777777777777777666444 667777777
Q ss_pred EccCCccCCCccch--hccCCCCccEEecccCCCCccchh----hcCCCCCcEEEcccCCCC
Q 008287 456 NIGNNFADLRALPR--SIGNLEMLEELDISNNQIRVLPDS----FRMLSRLRVLRVQENPLE 511 (571)
Q Consensus 456 ~L~~n~~~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L~~L~L~~N~l~ 511 (571)
++++| .+..+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|...
T Consensus 94 ~L~~N--~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNN--SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSC--CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCC--cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777 3455565 678889999999999999988874 889999999999998754
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=2.2e-14 Score=146.86 Aligned_cols=100 Identities=15% Similarity=0.212 Sum_probs=83.4
Q ss_pred cCCccceeecccccCCcCcc-ccCCCCCccEEEecCCCCCCCch-hhhcCCCCc-EEEccCCccCCCcc-chhccCCCCc
Q 008287 402 KIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVPE-SLCFATTLV-KMNIGNNFADLRAL-PRSIGNLEML 477 (571)
Q Consensus 402 ~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~i~~-~l~~~~~L~-~L~L~~n~~~l~~l-p~~l~~l~~L 477 (571)
.+++|+.|+|.+|.+..++. .|.++++|++|+|.+| ++.++. .+..+.+|+ .+++.++ +..+ +..|.+|++|
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~---l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPAS---VTAIEFGAFMGCDNL 299 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTT---CCEECTTTTTTCTTE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEccc---ceEEchhhhhCCccC
Confidence 37899999999999998864 6889999999999987 777765 456788898 9999875 3334 3578999999
Q ss_pred cEEecccCCCCccch-hhcCCCCCcEEEc
Q 008287 478 EELDISNNQIRVLPD-SFRMLSRLRVLRV 505 (571)
Q Consensus 478 ~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L 505 (571)
+.|++++|+++.++. +|..+++|+.|+.
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999999999975 8999999999874
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=3.2e-13 Score=125.22 Aligned_cols=131 Identities=30% Similarity=0.499 Sum_probs=82.1
Q ss_pred cEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCCcc-ccccCCccceeecccccCCcCcc-ccCCCCCccEEEecCCC
Q 008287 361 KKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPE-AVGKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNE 438 (571)
Q Consensus 361 ~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~Ls~n~ 438 (571)
+.++++++.+..+|..+ .++|++|++++|+++.++. .+..+++|++|++++|.+..++. .+..+++|++|+|++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 34444444444444322 2345555555555554432 23445555555555555555443 24555556666666555
Q ss_pred CCCCchhhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccchh-hcCCCCCcEEEcccCCCCCCChHH
Q 008287 439 LESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVPPRNI 517 (571)
Q Consensus 439 l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~~~~ 517 (571)
++.++ +..+..+++|+.|+|++|+|+.+|.. +..+++|+.|+|++|++.+.+..+
T Consensus 88 l~~~~------------------------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l 143 (177)
T 2o6r_A 88 LQSLP------------------------NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143 (177)
T ss_dssp CCCCC------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred ccccC------------------------HHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccH
Confidence 55443 22467789999999999999988864 688999999999999999987643
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.48 E-value=2e-13 Score=128.78 Aligned_cols=123 Identities=27% Similarity=0.421 Sum_probs=67.4
Q ss_pred CEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCch-hhcCCCCCCEEEccCCCC
Q 008287 269 VSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNNL 347 (571)
Q Consensus 269 ~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~l 347 (571)
+.++++++.++.+|..+. ++|++|+|++|.++.+|..+..+++|++|+|++|.|+.++. .|..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 345555555555554332 35566666666665555555556666666666666655543 355555666666666655
Q ss_pred CCCch-hhcCCcCCcEEeccCCCCCCCcc-ccCCCCCCcEEEccCCCC
Q 008287 348 SSLPD-SIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRL 393 (571)
Q Consensus 348 ~~lp~-~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l 393 (571)
+.++. .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55443 35555555555555555555443 244555555555555544
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=1.7e-13 Score=129.01 Aligned_cols=124 Identities=26% Similarity=0.448 Sum_probs=75.3
Q ss_pred cEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchh--hcCCcCCcEEeccCCCCCCC-ccccCCCCCCcEEEccCC
Q 008287 315 VYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDS--IGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYN 391 (571)
Q Consensus 315 ~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~--l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n 391 (571)
++|++++|.++.+|..+. .+|++|++++|.+..++.. +..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 445555555555554333 2555555555555554432 55555666666666655554 445666666666666666
Q ss_pred CCCCCc-cccccCCccceeecccccCCcC-ccccCCCCCccEEEecCCCCC
Q 008287 392 RLKALP-EAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELE 440 (571)
Q Consensus 392 ~l~~l~-~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~Ls~n~l~ 440 (571)
+++.++ ..+..+++|++|+|++|.+.++ |..+..+++|++|+|++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 666544 3356667777777777777764 556677777777777777776
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.44 E-value=3.7e-12 Score=133.89 Aligned_cols=255 Identities=15% Similarity=0.217 Sum_probs=177.3
Q ss_pred CCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCcc-hhhcCCCCccEE
Q 008287 240 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYL 317 (571)
Q Consensus 240 ~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L 317 (571)
..++.+.+.++ +..++ ...|..+ +|+.+++..+ ++.++. .|.+ .+|+.+.|.. .+..++ ..|..|++|+.+
T Consensus 113 ~~l~~i~ip~~-i~~I~--~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIP--KDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCTT-CCEEC--TTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred CCccEEEECCc-cCEeh--HhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 45666666653 33332 3455564 7888888766 666644 5666 4688888875 666664 467888889999
Q ss_pred EccCCCCCCCchhhcCCCCCCEEEccCCCCCCCch-hhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCCCCCC
Q 008287 318 DLRGNQISALPVALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKAL 396 (571)
Q Consensus 318 ~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l 396 (571)
++..|+++.++...-.+.+|+.+.+..+ +..++. .|..+++|+.+.+..+ +..++.......+|+.+.+ .+.++.+
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I 262 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNI 262 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEE
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEE
Confidence 9988888888775444688888888744 666654 4778888888888764 5555443333378888888 4456655
Q ss_pred c-cccccCCccceeecccccCC-----cC-ccccCCCCCccEEEecCCCCCCCch-hhhcCCCCcEEEccCCccCCCcc-
Q 008287 397 P-EAVGKIHTLEVLSVRYNNIK-----QL-PTTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIGNNFADLRAL- 467 (571)
Q Consensus 397 ~-~~l~~l~~L~~L~L~~n~i~-----~l-p~~l~~l~~L~~L~Ls~n~l~~i~~-~l~~~~~L~~L~L~~n~~~l~~l- 467 (571)
+ ..+..+.+|+.+.+.+|.+. .+ ...|.+|++|+.++|. +.++.++. .+..+.+|+.+.|..+. ..+
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~l---~~I~ 338 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPANV---TQIN 338 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTTC---CEEC
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECccc---cEEc
Confidence 3 56778888888888887665 33 3577888889999888 45777654 44567888888887663 233
Q ss_pred chhccCCCCccEEecccCCCCccch-hhcCCC-CCcEEEcccCC
Q 008287 468 PRSIGNLEMLEELDISNNQIRVLPD-SFRMLS-RLRVLRVQENP 509 (571)
Q Consensus 468 p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~-~L~~L~L~~N~ 509 (571)
...|.+| +|+.|++.+|.+..++. .|..++ ++..|++..+.
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 2457777 88888888888877753 566664 67778776554
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.8e-15 Score=143.33 Aligned_cols=88 Identities=26% Similarity=0.359 Sum_probs=37.9
Q ss_pred cccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcchhhcCCCCccEEEccCCCCCCCchhhcCCCCCCE
Q 008287 260 DSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEE 339 (571)
Q Consensus 260 ~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~~L~~ 339 (571)
..+..+++|++|++++|.+..+| .+.++++|++|++++|.++.+|..+..+++|++|++++|+++.+| .+..+++|++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence 34444444444444444444443 344444444444444444444433333344444444444444433 3333344444
Q ss_pred EEccCCCCCC
Q 008287 340 LDLGSNNLSS 349 (571)
Q Consensus 340 L~Ls~n~l~~ 349 (571)
|++++|.+..
T Consensus 120 L~l~~N~i~~ 129 (198)
T 1ds9_A 120 LYMSNNKITN 129 (198)
T ss_dssp EEESEEECCC
T ss_pred EECCCCcCCc
Confidence 4444444433
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=1.1e-12 Score=121.48 Aligned_cols=109 Identities=25% Similarity=0.449 Sum_probs=84.7
Q ss_pred cEEEccCCCCCCCccccccCCccceeecccccCCcC-ccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCcc
Q 008287 384 RELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFA 462 (571)
Q Consensus 384 ~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~~ 462 (571)
+.+++++|+++.+|..+. ++|++|+|++|.+.++ |..+..+++|++|+|++|.|+.+|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~------------------ 74 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT------------------ 74 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh------------------
Confidence 567777777777766543 6777777777777776 4566777777777777777766543
Q ss_pred CCCccchhccCCCCccEEecccCCCCccchh-hcCCCCCcEEEcccCCCCCCChHHH
Q 008287 463 DLRALPRSIGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVPPRNIV 518 (571)
Q Consensus 463 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~~~~~ 518 (571)
..+..+++|+.|+|++|+|+.+|.. |..+++|+.|+|++|+|.|.|..+.
T Consensus 75 ------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~ 125 (174)
T 2r9u_A 75 ------GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125 (174)
T ss_dssp ------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGH
T ss_pred ------hHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHH
Confidence 2357789999999999999999874 8999999999999999999997653
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=1.2e-12 Score=120.78 Aligned_cols=110 Identities=25% Similarity=0.441 Sum_probs=85.1
Q ss_pred CcEEEccCCCCCCCccccccCCccceeecccccCCcC-ccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCc
Q 008287 383 LRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNF 461 (571)
Q Consensus 383 L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~ 461 (571)
.+.+++++|+++.+|..+. ++|++|+|++|.+.++ |..+..+++|++|+|++|.|+.++.
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~----------------- 71 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA----------------- 71 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-----------------
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh-----------------
Confidence 4567777777777765543 6677777777777776 4556777777777777777766543
Q ss_pred cCCCccchhccCCCCccEEecccCCCCccch-hhcCCCCCcEEEcccCCCCCCChHHH
Q 008287 462 ADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRNIV 518 (571)
Q Consensus 462 ~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~~ 518 (571)
..+..+++|+.|+|++|+|+.+|. .|..+++|+.|+|++|+|+|.|..+.
T Consensus 72 -------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~ 122 (170)
T 3g39_A 72 -------GVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDIL 122 (170)
T ss_dssp -------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGH
T ss_pred -------hhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHH
Confidence 246788999999999999999876 58999999999999999999987543
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=2.7e-15 Score=142.12 Aligned_cols=133 Identities=21% Similarity=0.320 Sum_probs=76.9
Q ss_pred ccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhcCCCCcEE
Q 008287 376 TIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKM 455 (571)
Q Consensus 376 ~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L 455 (571)
.+..+++|++|++++|.++.+| .+..+++|++|++++|.+..+|..+..+++|++|+|++|.++.++ .+..+++|+.|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 4444555555555555555444 444555555555555555555544444455555555555555544 34455555555
Q ss_pred EccCCccCCCccc--hhccCCCCccEEecccCCCCccch-----------hhcCCCCCcEEEcccCCCCCCC
Q 008287 456 NIGNNFADLRALP--RSIGNLEMLEELDISNNQIRVLPD-----------SFRMLSRLRVLRVQENPLEVPP 514 (571)
Q Consensus 456 ~L~~n~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~-----------~l~~l~~L~~L~L~~N~l~~~~ 514 (571)
++++|. +..++ ..+..+++|+.|++++|.+...+. .+..+++|+.|+ +|+++...
T Consensus 121 ~l~~N~--i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~e 188 (198)
T 1ds9_A 121 YMSNNK--ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVDE 188 (198)
T ss_dssp EESEEE--CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTTT
T ss_pred ECCCCc--CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHHH
Confidence 555552 23333 256778888888888888765422 378889999886 77776543
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.40 E-value=2.5e-12 Score=119.12 Aligned_cols=124 Identities=31% Similarity=0.510 Sum_probs=65.2
Q ss_pred CEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCcch-hhcCCCCccEEEccCCCCCCCch-hhcCCCCCCEEEccCCC
Q 008287 269 VSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNN 346 (571)
Q Consensus 269 ~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~ 346 (571)
+.++++++.+..+|..+ .++|++|++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 44555555555555322 2455555665555555433 34555556666666665555543 24555555555555555
Q ss_pred CCCCchh-hcCCcCCcEEeccCCCCCCCccc-cCCCCCCcEEEccCCCCC
Q 008287 347 LSSLPDS-IGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLK 394 (571)
Q Consensus 347 l~~lp~~-l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~ 394 (571)
++.++.. +..+++|+.|++++|.++.+|.. +..+++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 5554433 34455555555555555554443 244555555555555544
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=1.3e-12 Score=133.74 Aligned_cols=216 Identities=14% Similarity=0.169 Sum_probs=141.3
Q ss_pred CCCCcEEEecCCCCCCcc-----------------cc-ccccCC--------CCCCCEEEeeCCCCCcccc-hhcCCCCc
Q 008287 239 KKGTRDLNLQNKLMDNIE-----------------WL-PDSIGK--------LSSLVSLDLSENRIVAVPA-TIGGLSSL 291 (571)
Q Consensus 239 ~~~l~~L~L~~~~~~~~~-----------------~l-~~~~~~--------l~~L~~L~Ls~n~i~~l~~-~l~~l~~L 291 (571)
+++|+.|+|++|.+..+. .+ ...|.. |++|+.|+|.+ .++.++. .|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 678999999998776111 11 123445 67777777766 6666643 56677777
Q ss_pred cEEEcccCCCCCcch-hhcCCCCccEEEccCCC----CCCCch-hhcCCCCCC--------------------------E
Q 008287 292 KKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQ----ISALPV-ALSRLVRLE--------------------------E 339 (571)
Q Consensus 292 ~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~----i~~lp~-~l~~l~~L~--------------------------~ 339 (571)
+.|++.+|.+..++. .|..+.++.++.+..+. ...+.. .+..+..|+ .
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 777777776665533 45555555555544421 111110 122222232 2
Q ss_pred EEccCCCCCCCchhh-cCCcCCcEEeccCCCCCCCcc-ccCCCCCCcEEEccCCCCCCCc-cccccCCccc-eeeccccc
Q 008287 340 LDLGSNNLSSLPDSI-GSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRLKALP-EAVGKIHTLE-VLSVRYNN 415 (571)
Q Consensus 340 L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~-~L~L~~n~ 415 (571)
+.+.++-...-...+ ..+++|+.|++.+|.++.++. .|..|++|+.|++..| ++.++ ..+..+.+|+ .|++.+ .
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 222221000000011 137899999999999998876 6888999999999987 77665 5678899999 999988 7
Q ss_pred CCcCc-cccCCCCCccEEEecCCCCCCCch-hhhcCCCCcEEEc
Q 008287 416 IKQLP-TTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNI 457 (571)
Q Consensus 416 i~~lp-~~l~~l~~L~~L~Ls~n~l~~i~~-~l~~~~~L~~L~L 457 (571)
+..++ ..|.+|++|+.|++.+|.++.++. .+..+++|+.++.
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 77764 688999999999999999998876 5667889988864
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.33 E-value=2.7e-11 Score=127.38 Aligned_cols=238 Identities=14% Similarity=0.235 Sum_probs=184.8
Q ss_pred cCCCCCCCEEEeeCCCCCcccc-hhcCCCCccEEEcccCCCCCcch-hhcCCCCccEEEccCCCCCCCch-hhcCCCCCC
Q 008287 262 IGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALPV-ALSRLVRLE 338 (571)
Q Consensus 262 ~~~l~~L~~L~Ls~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~i~~lp~-~l~~l~~L~ 338 (571)
+..+..++.+.+.++ ++.++. .|.++ +|+.+.|..+ ++.++. .|.+ .+|+.+.+.. .++.++. .|.++.+|+
T Consensus 109 ~~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 109 TEILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EEECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EEecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCC
Confidence 345578888888764 666644 67765 7999999876 777754 5656 4799999986 6777764 788999999
Q ss_pred EEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCc-cccCCCCCCcEEEccCCCCCCCcc-ccccCCccceeecccccC
Q 008287 339 ELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELP-HTIGQCSSLRELRVDYNRLKALPE-AVGKIHTLEVLSVRYNNI 416 (571)
Q Consensus 339 ~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~i 416 (571)
.+++..|.+..++.......+|+.+.+..+ +..++ ..|.+|++|+.+++..+ ++.++. .+.. .+|+.+.+ .+.+
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i 259 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGV 259 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTC
T ss_pred eeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCc
Confidence 999999999999887666799999999854 66664 46889999999999874 665553 4444 78999999 4566
Q ss_pred CcC-ccccCCCCCccEEEecCCCCC-----CCc-hhhhcCCCCcEEEccCCccCCCccc-hhccCCCCccEEecccCCCC
Q 008287 417 KQL-PTTMSSLSSLRELDVSFNELE-----SVP-ESLCFATTLVKMNIGNNFADLRALP-RSIGNLEMLEELDISNNQIR 488 (571)
Q Consensus 417 ~~l-p~~l~~l~~L~~L~Ls~n~l~-----~i~-~~l~~~~~L~~L~L~~n~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~ 488 (571)
..+ ...|.+|++|+.+++.+|.+. .++ ..+..+++|+.+.+.++ +..++ ..|.+|.+|+.|+|.++ ++
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~---i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES---IRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc---eEEEhhhhhcCCCCccEEEECcc-cc
Confidence 666 468899999999999998775 454 45678899999999865 33332 46888999999999655 88
Q ss_pred ccc-hhhcCCCCCcEEEcccCCCCCC
Q 008287 489 VLP-DSFRMLSRLRVLRVQENPLEVP 513 (571)
Q Consensus 489 ~lp-~~l~~l~~L~~L~L~~N~l~~~ 513 (571)
.+. .+|..+ +|+.|++.+|.+...
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCccc
Confidence 775 478889 999999999876543
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=2.6e-11 Score=112.20 Aligned_cols=38 Identities=29% Similarity=0.480 Sum_probs=14.7
Q ss_pred CccEEEcccCCCCCc-chhhcCCCCccEEEccCCCCCCC
Q 008287 290 SLKKLDLHANRIIEL-PDSIGDLLSLVYLDLRGNQISAL 327 (571)
Q Consensus 290 ~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~i~~l 327 (571)
+|++|+|++|.|+.+ |..+..+++|++|+|++|+|+.+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i 72 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI 72 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc
Confidence 344444444444333 22333334444444444443333
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.23 E-value=4.5e-11 Score=110.12 Aligned_cols=59 Identities=36% Similarity=0.562 Sum_probs=22.3
Q ss_pred CccEEEcccCCCCCc-chhhcCCCCccEEEccCCCCCCCchh-hcCCCCCCEEEccCCCCC
Q 008287 290 SLKKLDLHANRIIEL-PDSIGDLLSLVYLDLRGNQISALPVA-LSRLVRLEELDLGSNNLS 348 (571)
Q Consensus 290 ~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~i~~lp~~-l~~l~~L~~L~Ls~n~l~ 348 (571)
+|++|+|++|.|+.+ |..+..+++|++|+|++|+|+.+|.. +..+++|++|+|++|.++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC
Confidence 344444444444333 22333334444444444444333321 233333333333333333
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=3.4e-12 Score=132.89 Aligned_cols=90 Identities=24% Similarity=0.309 Sum_probs=49.0
Q ss_pred CCCCcEEEccCCCCCC-----CccccccCCccceeecccccCCc-----CccccCCCCCccEEEecCCCCCCCchhhhcC
Q 008287 380 CSSLRELRVDYNRLKA-----LPEAVGKIHTLEVLSVRYNNIKQ-----LPTTMSSLSSLRELDVSFNELESVPESLCFA 449 (571)
Q Consensus 380 l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~ 449 (571)
.++|++|++++|.++. ++..+..+++|++|+|++|.+.+ ++..+..+++|++|+|++|.|+....
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~----- 228 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA----- 228 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH-----
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH-----
Confidence 4556666666665542 23334455566666666666553 23445555666666666666653211
Q ss_pred CCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCc
Q 008287 450 TTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRV 489 (571)
Q Consensus 450 ~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 489 (571)
..+...+..+++|++|+|++|.|+.
T Consensus 229 ---------------~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 229 ---------------LALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp ---------------HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred ---------------HHHHHHHHhCCCCCEEeccCCCCCH
Confidence 1233344455666777777776663
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=1.3e-10 Score=119.51 Aligned_cols=105 Identities=25% Similarity=0.322 Sum_probs=78.4
Q ss_pred EEEccCC-CCCCCccccccCCccceeeccc-ccCCcCc-cccCCCCCccEEEecCCCCCCCchhhhcCCCCcEEEccCCc
Q 008287 385 ELRVDYN-RLKALPEAVGKIHTLEVLSVRY-NNIKQLP-TTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNF 461 (571)
Q Consensus 385 ~L~Ls~n-~l~~l~~~l~~l~~L~~L~L~~-n~i~~lp-~~l~~l~~L~~L~Ls~n~l~~i~~~l~~~~~L~~L~L~~n~ 461 (571)
.++++++ +++.+|. +..+.+|+.|+|++ |.+..++ ..|.++++|++|+|++|.|+.++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~------------------ 72 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA------------------ 72 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC------------------
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC------------------
Confidence 4566666 6777777 77777777777775 7777765 45777777777777777776553
Q ss_pred cCCCccchhccCCCCccEEecccCCCCccchh-hcCCCCCcEEEcccCCCCCCCh
Q 008287 462 ADLRALPRSIGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVPPR 515 (571)
Q Consensus 462 ~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~~ 515 (571)
|..|.++++|+.|+|++|+|+.+|.. +..++ |+.|+|.+|+|.|.|.
T Consensus 73 ------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 73 ------PDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp ------TTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred ------HHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 23567888899999999999988764 44444 9999999999999886
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=1.2e-11 Score=128.76 Aligned_cols=160 Identities=20% Similarity=0.250 Sum_probs=87.1
Q ss_pred CCCCEEEccCCCCCCCc-----hhhcC-CcCCcEEeccCCCCCC--CccccCCCCCCcEEEccCCCCCCCc-cccccCCc
Q 008287 335 VRLEELDLGSNNLSSLP-----DSIGS-LISLKKLIVETNDLEE--LPHTIGQCSSLRELRVDYNRLKALP-EAVGKIHT 405 (571)
Q Consensus 335 ~~L~~L~Ls~n~l~~lp-----~~l~~-l~~L~~L~L~~n~l~~--l~~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~ 405 (571)
+.|+.|++++|.++... ..+.. .++|+.|++++|.++. +......+++|++|++++|.++... ..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~------ 145 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD------ 145 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH------
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH------
Confidence 56777777777776321 11221 1455555555555542 1111122334455555555443211 00
Q ss_pred cceeecccccCCcCcccc-CCCCCccEEEecCCCCCC-----CchhhhcCCCCcEEEccCCccC---CCccchhccCCCC
Q 008287 406 LEVLSVRYNNIKQLPTTM-SSLSSLRELDVSFNELES-----VPESLCFATTLVKMNIGNNFAD---LRALPRSIGNLEM 476 (571)
Q Consensus 406 L~~L~L~~n~i~~lp~~l-~~l~~L~~L~Ls~n~l~~-----i~~~l~~~~~L~~L~L~~n~~~---l~~lp~~l~~l~~ 476 (571)
+...+ ...++|++|+|++|.|+. +...+...++|++|+|++|... ...++..+..+++
T Consensus 146 -------------L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~ 212 (372)
T 3un9_A 146 -------------LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ 212 (372)
T ss_dssp -------------HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred -------------HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence 11111 233445555555555432 2223334455555555555221 1234556777889
Q ss_pred ccEEecccCCCCc-----cchhhcCCCCCcEEEcccCCCCCC
Q 008287 477 LEELDISNNQIRV-----LPDSFRMLSRLRVLRVQENPLEVP 513 (571)
Q Consensus 477 L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~N~l~~~ 513 (571)
|+.|+|++|.|+. ++..+..+++|++|+|++|+++..
T Consensus 213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 9999999999984 456677889999999999998743
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.98 E-value=1.1e-09 Score=112.39 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=73.7
Q ss_pred EEEecCC-CCCCccccccccCCCCCCCEEEeeC-CCCCccc-chhcCCCCccEEEcccCCCCCcch-hhcCCCCccEEEc
Q 008287 244 DLNLQNK-LMDNIEWLPDSIGKLSSLVSLDLSE-NRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDL 319 (571)
Q Consensus 244 ~L~L~~~-~~~~~~~l~~~~~~l~~L~~L~Ls~-n~i~~l~-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L 319 (571)
.++++++ ++.. +|. +..+++|+.|+|++ |.|..++ ..|.++++|++|+|++|+|+.++. .|..+++|++|+|
T Consensus 12 ~v~~~~~n~l~~---ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALDS---LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCTT---TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCCc---cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 3566655 4443 566 77788888888885 7888775 467788888888888888886643 6678888888888
Q ss_pred cCCCCCCCchhhcCCCCCCEEEccCCCCCC
Q 008287 320 RGNQISALPVALSRLVRLEELDLGSNNLSS 349 (571)
Q Consensus 320 s~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~ 349 (571)
++|+|+.+|..+.....|+.|+|.+|.+..
T Consensus 88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 888888777644333348888888887763
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.95 E-value=1.1e-08 Score=107.19 Aligned_cols=193 Identities=18% Similarity=0.243 Sum_probs=107.2
Q ss_pred hhcCCCCccEEEccCCCCCCCch-hhcCCCCCCEEEccCCCCCCCch-hhcCCcCCcEEeccCCCC--------------
Q 008287 307 SIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDL-------------- 370 (571)
Q Consensus 307 ~l~~l~~L~~L~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l-------------- 370 (571)
.|..+.+|+.+.+.++ +..++. .|..+.+|+.+++..+ +..++. .+..+..|+.+.+..+..
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN 234 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence 4566677777777544 333333 4556666766666554 333322 244555555554433211
Q ss_pred -------CCC-ccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCC
Q 008287 371 -------EEL-PHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESV 442 (571)
Q Consensus 371 -------~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i 442 (571)
..+ ...+..+..|+.+.+..+...--...+..+..++.+....+.+.. ..+..+.+|+.+.+..+ ++.+
T Consensus 235 i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 235 IIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFI 311 (394)
T ss_dssp EEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEE
T ss_pred EEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc--ccccccccccccccccc-ccee
Confidence 111 113344555555555444322222334445555555544433221 34567777888877644 5555
Q ss_pred ch-hhhcCCCCcEEEccCCccCCCcc-chhccCCCCccEEecccCCCCccch-hhcCCCCCcEEEcccC
Q 008287 443 PE-SLCFATTLVKMNIGNNFADLRAL-PRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQEN 508 (571)
Q Consensus 443 ~~-~l~~~~~L~~L~L~~n~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N 508 (571)
.. .+..+.+|+.+++..+ +..+ ...|.+|.+|+.++|..+ ++.+.+ +|..+.+|+.+++..+
T Consensus 312 ~~~aF~~c~~L~~i~lp~~---v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPYL---VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT---CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred chhhhcCCCCCCEEEeCCc---ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 44 3456778888888655 2333 235777888888888766 777753 7888888888887543
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.94 E-value=6e-08 Score=101.42 Aligned_cols=258 Identities=12% Similarity=0.223 Sum_probs=137.9
Q ss_pred CcEEEecCCCCCCccccccccCCCCCCCEEEeeCCC---CCccc-chhcCCCCccEEEcccCCCCCcc-hhhcCCCCccE
Q 008287 242 TRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENR---IVAVP-ATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVY 316 (571)
Q Consensus 242 l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~---i~~l~-~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~ 316 (571)
|+.+.+... +..++ ..+|..|.+|+.+.+..+. ++.+. ..|.++.+|+.+.+..+ ++.++ ..+..+.+|+.
T Consensus 66 L~sI~iP~s-vt~Ig--~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIG--SNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCEEEECTT-CCEEC--TTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred CEEEEECCC-eeEEh--HHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 566666543 33333 3456667777777666542 44443 25666666666655432 44442 24556666666
Q ss_pred EEccCCCCCCCch-hhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCCCccccCCCCCCcEEEccCCC---
Q 008287 317 LDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNR--- 392 (571)
Q Consensus 317 L~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~--- 392 (571)
+.+..+ +..++. .+..+..|+.+.+..+ +..+........+|+.+.+..+...--...+..+.++.......+.
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceeccccccccc
Confidence 666533 333322 4455566666665443 3333332222344555544332111111222333333333222111
Q ss_pred ---------------------------------CCCC-ccccccCCccceeecccccCCcCccccCCCCCccEEEecCCC
Q 008287 393 ---------------------------------LKAL-PEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNE 438 (571)
Q Consensus 393 ---------------------------------l~~l-~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~ 438 (571)
++.+ ...+..+..|+.+.+..+...--...+.+++.|+.+.+. +.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~ 298 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SR 298 (394)
T ss_dssp SSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TT
T ss_pred ccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccceecCcccccccccccccCC-Cc
Confidence 1111 123455667777777654332223466777888888875 45
Q ss_pred CCCCch-hhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccc-hhhcCCCCCcEEEcccCC
Q 008287 439 LESVPE-SLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLP-DSFRMLSRLRVLRVQENP 509 (571)
Q Consensus 439 l~~i~~-~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~N~ 509 (571)
++.++. .+..+.+|+.+++..+...++ ...|.+|.+|+.+.|..+ ++.+. .+|..+.+|+.+++.++.
T Consensus 299 i~~I~~~aF~~c~~L~~i~lp~~v~~I~--~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 299 ITELPESVFAGCISLKSIDIPEGITQIL--DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECCTTCCEEC--TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred ccccCceeecCCCCcCEEEeCCcccEeh--HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 666654 345678888888876532222 236778888888888654 77775 478888888888887764
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.91 E-value=2.1e-08 Score=104.85 Aligned_cols=261 Identities=13% Similarity=0.166 Sum_probs=160.0
Q ss_pred ccCCCCCcEEEecCCCCCCccccccccCCCCCCCEEEeeCCCCCccc-chhcCCCCccEEEcccCCCCCcc-hhhcCCCC
Q 008287 236 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELP-DSIGDLLS 313 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~ 313 (571)
+..+.+|+.+.|..+ +..++ ..+|..|++|+.++|..+ ++.++ ..|.++..|+.+.+..+ +..+. ..+..+..
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~--~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIG--EFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEEC--TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred hhCCCCceEEEeCCC-ccCcc--hhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 445667888888643 44444 456888999999999755 66664 36788888888776543 44442 34555543
Q ss_pred ccEEEccCCCCCCCc-hhhcCCCCCCEEEccCCCCCCCch-hhcCCcCCcEEeccCCCCCCCc-cccCCCCCCcEEEccC
Q 008287 314 LVYLDLRGNQISALP-VALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDLEELP-HTIGQCSSLRELRVDY 390 (571)
Q Consensus 314 L~~L~Ls~n~i~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~Ls~ 390 (571)
+...... .+..+. ..|.++.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..++ ..+..+..|+.+.+..
T Consensus 142 ~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 142 KEITIPE--GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp SEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccCc--cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 3333222 223332 36788999999999765 444544 4778899999988765 33332 3556666677666544
Q ss_pred CCCC---------------------CCc-cccccCCccceeecccccCCcCccccCCCCCccEEEecCCCCCCCchhhhc
Q 008287 391 NRLK---------------------ALP-EAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCF 448 (571)
Q Consensus 391 n~l~---------------------~l~-~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~i~~~l~~ 448 (571)
+... .+. ..+..+..|+.+.+..+...--...+..+..++.+.+..+.+.. ..+..
T Consensus 218 ~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~ 295 (394)
T 4fs7_A 218 SLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYG 295 (394)
T ss_dssp TCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTT
T ss_pred CceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc--ccccc
Confidence 3211 111 12233444555555443322223344555556555554433221 23456
Q ss_pred CCCCcEEEccCCccCCCccc-hhccCCCCccEEecccCCCCccc-hhhcCCCCCcEEEcccCCCCC
Q 008287 449 ATTLVKMNIGNNFADLRALP-RSIGNLEMLEELDISNNQIRVLP-DSFRMLSRLRVLRVQENPLEV 512 (571)
Q Consensus 449 ~~~L~~L~L~~n~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~ 512 (571)
+.+|+.+.+..+. ..++ ..|.+|.+|+.++|.++ ++.+. .+|..+.+|+.+.+..+ ++.
T Consensus 296 ~~~L~~i~l~~~i---~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~ 356 (394)
T 4fs7_A 296 CSSLTEVKLLDSV---KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK 356 (394)
T ss_dssp CTTCCEEEECTTC---CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred ccccccccccccc---ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE
Confidence 7888888887663 3332 35788999999999754 78786 47899999999999766 443
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.83 E-value=1.1e-07 Score=99.49 Aligned_cols=267 Identities=11% Similarity=0.207 Sum_probs=157.0
Q ss_pred ccCCCCCcEEEecCCCCCCcccc-ccccCCCCCCCEEEeeCCCCCccc-chhcCCCCccEEEcccCCCCCcc-hhhcCCC
Q 008287 236 VSSKKGTRDLNLQNKLMDNIEWL-PDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELP-DSIGDLL 312 (571)
Q Consensus 236 ~~~~~~l~~L~L~~~~~~~~~~l-~~~~~~l~~L~~L~Ls~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~ 312 (571)
+..+.+|+.+.+..+.-..+..+ ...|..|.+|+.+.+..+ ++.++ ..|.++.+|+.+.+..+ +..++ ..+..+.
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~ 160 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCY 160 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceeccc
Confidence 44567788888876542222222 346777888887776654 45553 35677788888887543 34442 3566677
Q ss_pred CccEEEccCCCCCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCC------------------------
Q 008287 313 SLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETN------------------------ 368 (571)
Q Consensus 313 ~L~~L~Ls~n~i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n------------------------ 368 (571)
.|+.+.+..+ +..+....-....|+.+.+..+-...-...+..+.++.......+
T Consensus 161 ~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (394)
T 4gt6_A 161 SLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYP 239 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECC
T ss_pred ccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceecccccccccccceeecccccccccccccc
Confidence 7777777654 444433222234566666544321111122333333333221111
Q ss_pred ------------CCCCC-ccccCCCCCCcEEEccCCCCCCCccccccCCccceeecccccCCcCc-cccCCCCCccEEEe
Q 008287 369 ------------DLEEL-PHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDV 434 (571)
Q Consensus 369 ------------~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L 434 (571)
.+..+ ...|..+..|+.+.+..+...--...+.++.+|+.+.+. +.+..++ ..|.+|.+|+.++|
T Consensus 240 ~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~l 318 (394)
T 4gt6_A 240 SQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDI 318 (394)
T ss_dssp TTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEEC
T ss_pred cccccceEEcCCcceEcccceeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEe
Confidence 11111 135677889999998765433223567788999999996 4566654 47889999999999
Q ss_pred cCCCCCCCch-hhhcCCCCcEEEccCCccCCCccchhccCCCCccEEecccCCCCccchhhcCCCCCcEEEcccCCCC
Q 008287 435 SFNELESVPE-SLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLE 511 (571)
Q Consensus 435 s~n~l~~i~~-~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~N~l~ 511 (571)
..+ ++.+.. .+..+.+|+.+.+..+...++ ...|.+|.+|+.+++.++... ...+.....|+.+.+..|.+.
T Consensus 319 p~~-v~~I~~~aF~~C~~L~~i~ip~sv~~I~--~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 319 PEG-ITQILDDAFAGCEQLERIAIPSSVTKIP--ESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEECTTCCBCC--GGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC-----------
T ss_pred CCc-ccEehHhHhhCCCCCCEEEECcccCEEh--HhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEeCCCCEE
Confidence 754 777754 456789999999977633332 347899999999999987432 245677888999888776553
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=3.9e-09 Score=109.09 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=33.8
Q ss_pred CCCCcEEEccCCCCCC-Ccccc---ccCCccceeecccccCCc-----CccccCCCCCccEEEecCCCCC
Q 008287 380 CSSLRELRVDYNRLKA-LPEAV---GKIHTLEVLSVRYNNIKQ-----LPTTMSSLSSLRELDVSFNELE 440 (571)
Q Consensus 380 l~~L~~L~Ls~n~l~~-l~~~l---~~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~Ls~n~l~ 440 (571)
+++|++|++.+|.+.. .+..+ ..+++|++|+|+.|.+.+ ++..+..+++|+.|+|++|.|+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 5566666666655541 11111 235666667776666654 2333445667777777777665
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=3.1e-08 Score=102.36 Aligned_cols=158 Identities=17% Similarity=0.196 Sum_probs=75.5
Q ss_pred CCCCCcEEEecCCCCCC--c-----cccccccCCCCCCCEEEeeCCCCCcccchhcCCCCccEEEcccCCCCCc-chhh-
Q 008287 238 SKKGTRDLNLQNKLMDN--I-----EWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIEL-PDSI- 308 (571)
Q Consensus 238 ~~~~l~~L~L~~~~~~~--~-----~~l~~~~~~l~~L~~L~Ls~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l-p~~l- 308 (571)
.+++|+.|.+.+..... + ..+...+..+++|+.|+|++|.-..++. +. +++|++|+|..|.+..- ...+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHH
Confidence 44577888776543221 1 1233445566667777766663122332 22 55666666666555411 1122
Q ss_pred -cCCCCccEEEccCC--C------CCCCchhhcCCCCCCEEEccCCCCCCCchhhcCCcCCcEEeccCCCCCC-Cccc--
Q 008287 309 -GDLLSLVYLDLRGN--Q------ISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEE-LPHT-- 376 (571)
Q Consensus 309 -~~l~~L~~L~Ls~n--~------i~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~-l~~~-- 376 (571)
..+++|++|+|+.+ . +..+...+. ...+++|+.|.+.+|.+.. .+..
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~---------------------~~~~p~Lr~L~L~~~~i~~~~~~~la 273 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS---------------------KDRFPNLKWLGIVDAEEQNVVVEMFL 273 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC---------------------TTTCTTCCEEEEESCTTHHHHHHHHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHh---------------------cCCCCCcCEEeCCCCCCchHHHHHHH
Confidence 24566666665421 1 111111111 0123445555554444431 0111
Q ss_pred -cCCCCCCcEEEccCCCCCC-----CccccccCCccceeecccccCCc
Q 008287 377 -IGQCSSLRELRVDYNRLKA-----LPEAVGKIHTLEVLSVRYNNIKQ 418 (571)
Q Consensus 377 -l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~i~~ 418 (571)
...+++|++|+|+.|.++. ++..+..+++|+.|+|++|.+++
T Consensus 274 ~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 1235566666666666653 33334456677777777776654
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=2.8e-08 Score=92.66 Aligned_cols=88 Identities=23% Similarity=0.218 Sum_probs=37.8
Q ss_pred ccCCCCCCCEEEeeCC-CCCc-----ccchhcCCCCccEEEcccCCCCC-----cchhhcCCCCccEEEccCCCCCC---
Q 008287 261 SIGKLSSLVSLDLSEN-RIVA-----VPATIGGLSSLKKLDLHANRIIE-----LPDSIGDLLSLVYLDLRGNQISA--- 326 (571)
Q Consensus 261 ~~~~l~~L~~L~Ls~n-~i~~-----l~~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~--- 326 (571)
.+..++.|++|+|++| .+.. +...+...++|++|+|++|.|.. +...+...++|++|+|++|.|+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3344444555555444 4431 22233444445555555554441 22233334445555555554442
Q ss_pred --CchhhcCCCCCCEEEc--cCCCCC
Q 008287 327 --LPVALSRLVRLEELDL--GSNNLS 348 (571)
Q Consensus 327 --lp~~l~~l~~L~~L~L--s~n~l~ 348 (571)
+...+...+.|++|++ ++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2233344444444444 444444
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=3.7e-08 Score=91.83 Aligned_cols=111 Identities=16% Similarity=0.224 Sum_probs=66.5
Q ss_pred chhcCCCCccEEEcccC-CCCC-----cchhhcCCCCccEEEccCCCCCC-----CchhhcCCCCCCEEEccCCCCCC--
Q 008287 283 ATIGGLSSLKKLDLHAN-RIIE-----LPDSIGDLLSLVYLDLRGNQISA-----LPVALSRLVRLEELDLGSNNLSS-- 349 (571)
Q Consensus 283 ~~l~~l~~L~~L~L~~n-~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~-----lp~~l~~l~~L~~L~Ls~n~l~~-- 349 (571)
..+...+.|++|+|++| .+.. +...+...++|++|+|++|.|.. +...+...+.|++|+|++|.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 35667778888888887 7762 34556667778888888887763 34455556677777777777763
Q ss_pred ---CchhhcCCcCCcEEec--cCCCCCC-----CccccCCCCCCcEEEccCCCC
Q 008287 350 ---LPDSIGSLISLKKLIV--ETNDLEE-----LPHTIGQCSSLRELRVDYNRL 393 (571)
Q Consensus 350 ---lp~~l~~l~~L~~L~L--~~n~l~~-----l~~~l~~l~~L~~L~Ls~n~l 393 (571)
+...+...++|++|++ ++|.+.. +...+...++|++|++++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3344455555555555 4455541 223333444455555554443
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.43 E-value=1.6e-05 Score=82.25 Aligned_cols=124 Identities=14% Similarity=0.265 Sum_probs=62.8
Q ss_pred CCCCCCcEEEccCCCCCCC-ccccccCCccceeecccccCCcCc-cccCCCCCccEEEecCCCCCCCch-hhhcCCCCcE
Q 008287 378 GQCSSLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELESVPE-SLCFATTLVK 454 (571)
Q Consensus 378 ~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~Ls~n~l~~i~~-~l~~~~~L~~ 454 (571)
..+.+|+.+.+..+ +..+ ...+..+..|+.+.+..+ +..+. ..+.++.+|+.+.+..+ +..++. .+..+.+|+.
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 34445555555332 2222 133445556666666543 33332 34556666666666432 444433 3345566666
Q ss_pred EEccCCccCCCccc-hhccCCCCccEEecccCCCCccch-hhcCCCCCcEEEccc
Q 008287 455 MNIGNNFADLRALP-RSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQE 507 (571)
Q Consensus 455 L~L~~n~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~ 507 (571)
+.+.++ .+..++ ..|.+|.+|+.+.|.++ ++.|.. +|..+.+|+.+.+..
T Consensus 291 i~l~~~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 291 VVMDNS--AIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccc--ccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 666554 222222 34566666666666543 555543 566666666666643
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.38 E-value=2.2e-05 Score=81.20 Aligned_cols=109 Identities=14% Similarity=0.235 Sum_probs=52.6
Q ss_pred ccCCCCCCcEEEccCCCCCCCc-cccccCCccceeecccccCCcCc-cccCCCCCccEEEecCCCCCCCch-hhhcCCCC
Q 008287 376 TIGQCSSLRELRVDYNRLKALP-EAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELESVPE-SLCFATTL 452 (571)
Q Consensus 376 ~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~Ls~n~l~~i~~-~l~~~~~L 452 (571)
.+..+..|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ +..++ ..+.++.+|+.+.+.++.++.++. .+..+.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3445555666555443 33332 23444555555555432 33332 345555666666665555555543 23345566
Q ss_pred cEEEccCCccCCCccc-hhccCCCCccEEecccCCCCcc
Q 008287 453 VKMNIGNNFADLRALP-RSIGNLEMLEELDISNNQIRVL 490 (571)
Q Consensus 453 ~~L~L~~n~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~l 490 (571)
+.+.|..+. ..+. ..|.+|.+|+.+.|..+ ++.+
T Consensus 313 ~~i~lp~~l---~~I~~~aF~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 313 SSVTLPTAL---KTIQVYAFKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp CEEECCTTC---CEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred CEEEcCccc---cEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence 666654432 2221 24555566665555433 4444
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.93 E-value=1.6e-06 Score=85.27 Aligned_cols=78 Identities=27% Similarity=0.375 Sum_probs=46.3
Q ss_pred cCCCCccEEEcccCCCCCcc---hhhcCCCCccEEEccCCCCCCCchhhcCCC--CCCEEEccCCCCC-CCc-------h
Q 008287 286 GGLSSLKKLDLHANRIIELP---DSIGDLLSLVYLDLRGNQISALPVALSRLV--RLEELDLGSNNLS-SLP-------D 352 (571)
Q Consensus 286 ~~l~~L~~L~L~~n~l~~lp---~~l~~l~~L~~L~Ls~n~i~~lp~~l~~l~--~L~~L~Ls~n~l~-~lp-------~ 352 (571)
.++++|+.|+|++|+|+.++ ..+..+++|++|+|++|.|+.+. .+..+. +|++|+|++|.+. .+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45667777777777776542 34456777777777777777652 233333 6777777777665 232 1
Q ss_pred hhcCCcCCcEEe
Q 008287 353 SIGSLISLKKLI 364 (571)
Q Consensus 353 ~l~~l~~L~~L~ 364 (571)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244555665553
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.77 E-value=1.8e-05 Score=77.67 Aligned_cols=79 Identities=27% Similarity=0.364 Sum_probs=57.8
Q ss_pred CCCCCCCEEEeeCCCCCccc---chhcCCCCccEEEcccCCCCCcchhhcCCC--CccEEEccCCCCCC-Cc-------h
Q 008287 263 GKLSSLVSLDLSENRIVAVP---ATIGGLSSLKKLDLHANRIIELPDSIGDLL--SLVYLDLRGNQISA-LP-------V 329 (571)
Q Consensus 263 ~~l~~L~~L~Ls~n~i~~l~---~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~--~L~~L~Ls~n~i~~-lp-------~ 329 (571)
..+++|+.|+|++|.|..++ ..+..+++|+.|+|++|.|..+ ..+..+. +|++|+|++|.+.. +| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 46788888888888887654 4566788888888888888866 3333333 88899999888873 33 2
Q ss_pred hhcCCCCCCEEEc
Q 008287 330 ALSRLVRLEELDL 342 (571)
Q Consensus 330 ~l~~l~~L~~L~L 342 (571)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4677888888763
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.65 E-value=0.0001 Score=64.05 Aligned_cols=42 Identities=26% Similarity=0.333 Sum_probs=38.3
Q ss_pred CCccEEecccCCCCccch-hhcCCCCCcEEEcccCCCCCCChH
Q 008287 475 EMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRN 516 (571)
Q Consensus 475 ~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~ 516 (571)
++|+.|+|++|+|+.||. .|..+++|+.|+|.+|||.|+|..
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 469999999999999975 688999999999999999999974
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.57 E-value=5.7e-05 Score=70.44 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=40.7
Q ss_pred ccCCCCCCCEEEeeCC-CCCc-----ccchhcCCCCccEEEcccCCCC-----CcchhhcCCCCccEEEccCCCCCC---
Q 008287 261 SIGKLSSLVSLDLSEN-RIVA-----VPATIGGLSSLKKLDLHANRII-----ELPDSIGDLLSLVYLDLRGNQISA--- 326 (571)
Q Consensus 261 ~~~~l~~L~~L~Ls~n-~i~~-----l~~~l~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~--- 326 (571)
.+..-+.|+.|+|+++ .|.. +...+...+.|+.|+|++|.|. .+...+..-+.|++|+|++|.|+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3344455666666653 4442 2234445555666666655555 223334444555555555555552
Q ss_pred --CchhhcCCCCCCEEEccC
Q 008287 327 --LPVALSRLVRLEELDLGS 344 (571)
Q Consensus 327 --lp~~l~~l~~L~~L~Ls~ 344 (571)
+...+..-+.|++|+|++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHhhCCceeEEECCC
Confidence 223334444455555543
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.56 E-value=7.3e-05 Score=68.37 Aligned_cols=81 Identities=14% Similarity=0.227 Sum_probs=44.2
Q ss_pred ccceeecccccCCcC-ccccCCCCCccEEEecCCC-CCCCchhhhcCCCCcEEEccCCccCCCccchhccCC----CCcc
Q 008287 405 TLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNE-LESVPESLCFATTLVKMNIGNNFADLRALPRSIGNL----EMLE 478 (571)
Q Consensus 405 ~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~Ls~n~-l~~i~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l----~~L~ 478 (571)
.|+.|++++|.+++. -..+.++++|++|+|++|. |++- .+ ..+..+ ++|+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-----------------------gL-~~L~~~~~~~~~L~ 117 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-----------------------CL-ERLSQLENLQKSML 117 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH-----------------------HH-HHHHTCHHHHHHCC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH-----------------------HH-HHHHhcccccCCCC
Confidence 566666666665541 1334566666666666663 4421 11 122222 3577
Q ss_pred EEecccC-CCCcc-chhhcCCCCCcEEEcccCC
Q 008287 479 ELDISNN-QIRVL-PDSFRMLSRLRVLRVQENP 509 (571)
Q Consensus 479 ~L~Ls~n-~l~~l-p~~l~~l~~L~~L~L~~N~ 509 (571)
+|+|++| +|++- -..+..+++|+.|+|++|+
T Consensus 118 ~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 118 EMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp EEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred EEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 7777776 46632 1235566777777777776
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.55 E-value=7.4e-05 Score=69.63 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=70.4
Q ss_pred CCCCCcEEEecCC-CCCC--ccccccccCCCCCCCEEEeeCCCCCc-----ccchhcCCCCccEEEcccCCCC-----Cc
Q 008287 238 SKKGTRDLNLQNK-LMDN--IEWLPDSIGKLSSLVSLDLSENRIVA-----VPATIGGLSSLKKLDLHANRII-----EL 304 (571)
Q Consensus 238 ~~~~l~~L~L~~~-~~~~--~~~l~~~~~~l~~L~~L~Ls~n~i~~-----l~~~l~~l~~L~~L~L~~n~l~-----~l 304 (571)
.-+.|+.|+|+++ .+.+ ...+...+..-+.|+.|+|++|.|.+ +...+...+.|++|+|++|.|+ .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4456778888774 5553 23455666777778888888887763 3345566677888888888777 23
Q ss_pred chhhcCCCCccEEEccCC---CCCC-----CchhhcCCCCCCEEEccCCCC
Q 008287 305 PDSIGDLLSLVYLDLRGN---QISA-----LPVALSRLVRLEELDLGSNNL 347 (571)
Q Consensus 305 p~~l~~l~~L~~L~Ls~n---~i~~-----lp~~l~~l~~L~~L~Ls~n~l 347 (571)
...+..-+.|++|+|++| .+.. +...+..-+.|+.|+++.|.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 445566667888888765 3331 334455566777777765543
No 163
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.52 E-value=0.00012 Score=67.02 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=32.0
Q ss_pred CCCEEEeeCCCCCcc-cchhcCCCCccEEEcccCC-CCCc-chhhcCC----CCccEEEccCCC-CCC--CchhhcCCCC
Q 008287 267 SLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANR-IIEL-PDSIGDL----LSLVYLDLRGNQ-ISA--LPVALSRLVR 336 (571)
Q Consensus 267 ~L~~L~Ls~n~i~~l-~~~l~~l~~L~~L~L~~n~-l~~l-p~~l~~l----~~L~~L~Ls~n~-i~~--lp~~l~~l~~ 336 (571)
.|+.||+++|.|++. -..+.++++|++|+|++|. |+.- -..+..+ ++|++|+|++|. |++ + ..+.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCC
Confidence 344444444444421 1123444455555555442 3311 1122222 245555555542 442 2 13334455
Q ss_pred CCEEEccCC
Q 008287 337 LEELDLGSN 345 (571)
Q Consensus 337 L~~L~Ls~n 345 (571)
|++|+++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.93 E-value=0.011 Score=51.17 Aligned_cols=35 Identities=37% Similarity=0.484 Sum_probs=15.2
Q ss_pred CccEEEccCCCCCCCch-hhcCCCCCCEEEccCCCC
Q 008287 313 SLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNNL 347 (571)
Q Consensus 313 ~L~~L~Ls~n~i~~lp~-~l~~l~~L~~L~Ls~n~l 347 (571)
+|++|+|++|+|+.+|. .|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 34444444444444433 233344444444444433
No 165
>1k4u_P Phagocyte NADPH oxidase subunit P47PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=68.23 E-value=2.2 Score=26.27 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=9.5
Q ss_pred CCCCCChhHHH
Q 008287 22 LPERPGIEEIE 32 (571)
Q Consensus 22 ~~~~~~~~~~~ 32 (571)
.|+||+.||+-
T Consensus 7 vPpRPs~~lIl 17 (32)
T 1k4u_P 7 VPPRPSADLIL 17 (32)
T ss_dssp CCCCCCHHHHH
T ss_pred CCCCCCHHHHH
Confidence 69999999874
No 166
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=61.42 E-value=30 Score=32.71 Aligned_cols=90 Identities=13% Similarity=0.218 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhH--HHHHHHHHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhhchhc-cchH
Q 008287 7 SIDEAVEEIMRIHKSLPERPGIEE--IEAAKTLIRNVEKEDQARVESIARQTKSPDVPEELFMVLQEMQKNLVYF-QSKE 83 (571)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 83 (571)
++++++++|...... |+.++.++ .-++...+..+|++-|+...+|-+..+.. .....-|+.+||..+.. +.+
T Consensus 159 ~~~ei~~~I~~~l~~-~~~~~~~~~~~~~~~~~l~~lD~~~~~iv~~~~~~~~~~---~~~~~~L~~~rr~fl~~~~~~- 233 (260)
T 3a4m_A 159 DFNEIAKKLIEKSKE-IPKFYVLEENKNKNNNISDKIDKETRKIVSEYIKSKKLD---KDKIKEVVELRKEFLKKIKKM- 233 (260)
T ss_dssp CHHHHHHHHHHHHTS-CCCC-----------CHHHHHHHHHHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHhcccC-CCCcccccCCCCCCccHHHHHHHHHHHHHHHHHHhhhcc---cccHHHHHHHHHHHHHHHhcC-
Confidence 578899999988776 45554422 33445689999999999999988755433 45678889999998842 211
Q ss_pred HHHHHhhhhhhhhHHHhHHHHHHh
Q 008287 84 QKREALKLLDLENVHALFDEYIQR 107 (571)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~ 107 (571)
--.+.+++-.+|=+++++
T Consensus 234 ------~~~~~~~~~~~f~~~l~~ 251 (260)
T 3a4m_A 234 ------EEVDADRVLKEFKDLLNS 251 (260)
T ss_dssp --------CCHHHHHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHH
Confidence 235778888888888764
No 167
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=42.14 E-value=1.3e+02 Score=25.64 Aligned_cols=67 Identities=16% Similarity=0.301 Sum_probs=40.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhhchhccchHHHHHHhhhhhhhhHHHhHHHHHHhh
Q 008287 34 AKTLIRNVEKEDQARVESIARQTKSPDVPEELFMVLQEMQKNLVYFQSKEQKREALKLLDLENVHALFDEYIQRA 108 (571)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (571)
|.+......+==.+|.+++++..+-|.|-+ ....++|+= -++=..=-.-+.|+++.++++=|+|...
T Consensus 65 ~~~~~~~i~~Y~~~Ra~~v~K~~k~p~v~D-y~~~v~e~D-------ek~~~~lr~~~~elRn~Y~~l~D~i~KN 131 (140)
T 1avo_B 65 LEGFHTQISKYFSERGDAVTKAAKQPHVGD-YRQLVHELD-------EAEYRDIRLMVMEIRNAYAVLYDIILKN 131 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTBTH-HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555666678888888778888733 333333321 1122222346788888888888887654
No 168
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=38.85 E-value=28 Score=30.95 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=25.3
Q ss_pred HHHHHHHhhc-CCCCChhHHHHHHHHHHhhchhccchHHHHHH
Q 008287 47 ARVESIARQT-KSPDVPEELFMVLQEMQKNLVYFQSKEQKREA 88 (571)
Q Consensus 47 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (571)
.||..|-+.. |-..=|+|++...+++++.+-.+...+.+.++
T Consensus 129 ~RL~~l~~L~RKyg~~~eell~~~~~~~~eL~~l~~~~~~l~~ 171 (175)
T 4abx_A 129 ARLSALSKLKNKYGPTLEDVVEFGAQAAEELAGLEEDERDAGS 171 (175)
T ss_dssp HHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 4455554432 22234678888888888887776666555443
No 169
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=38.36 E-value=44 Score=23.72 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHh-hcCCCCChh-HHHHHHHHHHh
Q 008287 43 KEDQARVESIAR-QTKSPDVPE-ELFMVLQEMQK 74 (571)
Q Consensus 43 ~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~ 74 (571)
+-|-.||++..- ..+..|||+ ||-.++.|+|+
T Consensus 17 kveiQRLE~ml~p~~~~e~v~eeEl~ei~~eARd 50 (67)
T 1wmi_B 17 KVEIQRLEAMLMPEERDEDITEEEIAELLELARD 50 (67)
T ss_dssp HHHHHHHHHHTSCBCCCTTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhc
Confidence 345568887764 445557887 45556667765
No 170
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=34.02 E-value=55 Score=31.80 Aligned_cols=48 Identities=13% Similarity=0.315 Sum_probs=21.7
Q ss_pred CCCCChhHHHHHHHHHHhhhhHHHHHHHHHHhhcCC--CCChhHHHHHHHHHHh
Q 008287 23 PERPGIEEIEAAKTLIRNVEKEDQARVESIARQTKS--PDVPEELFMVLQEMQK 74 (571)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 74 (571)
|.|||+++.+ .|......=...|...-+...+ +.-=++|+..|-++|.
T Consensus 185 pd~~gL~~~~----~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~ 234 (303)
T 1xdk_B 185 GDRQDLEEPT----KVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRS 234 (303)
T ss_dssp SCSSSCSSHH----HHHHHTHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHH
T ss_pred CCCCCCccHH----HHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHH
Confidence 5666666543 3333333333344433332222 1222366666666665
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=32.02 E-value=55 Score=26.02 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=21.0
Q ss_pred cccCCCCCCCEEEeeCCCCCccc-chhcCCCCccEEEccc
Q 008287 260 DSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHA 298 (571)
Q Consensus 260 ~~~~~l~~L~~L~Ls~n~i~~l~-~~l~~l~~L~~L~L~~ 298 (571)
..|..|.+|+.+.|..+ ++.+. ..|.++.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 45566666666666554 33332 2455666666666554
No 172
>1m5i_A APC protein; coiled-coil, antitumor protein; 2.00A {Homo sapiens} SCOP: h.4.13.1
Probab=29.68 E-value=1.3e+02 Score=24.58 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=48.3
Q ss_pred hhHHHHHHH-HHHhhhhHHHHHHHHHHh-------hcCCCCChhHHHHHHHHHHhhchhccchHHHHHHhhhhhhhhHHH
Q 008287 28 IEEIEAAKT-LIRNVEKEDQARVESIAR-------QTKSPDVPEELFMVLQEMQKNLVYFQSKEQKREALKLLDLENVHA 99 (571)
Q Consensus 28 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (571)
.||.+-++. |+.-.||||+.+.=.-+. ...-|.+ |-|+.=-.|=|.=.-|.+.+=| -.+|.+|.
T Consensus 9 leeL~rer~~Ll~EieKEekek~wyysqlq~l~kRi~~lP~~--e~fs~Q~D~iRqQLefEa~~ir------s~mEEr~G 80 (125)
T 1m5i_A 9 LEELEKERSLLLADLDKEEKEKDWYYAQLQNLTKRIDSLPLT--ENFSLQTDMTRRQLEYEARQIR------VAMEEQLG 80 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-------CHHHHHHHHHHHHHHHHHH------HHHHHHHC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcccc--ccchhhhHHHHHHHHHHHHHHH------HHHHHHhc
Confidence 468999998 899999999987654442 2223333 4466554444444444433222 13678899
Q ss_pred hHHHHHHhhhcccc
Q 008287 100 LFDEYIQRASQCLA 113 (571)
Q Consensus 100 ~~~~~~~~~s~~~s 113 (571)
+=|+.+|||-.+++
T Consensus 81 t~deM~qRaQiRv~ 94 (125)
T 1m5i_A 81 TCQDMEKRAQRRIA 94 (125)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999987765
No 173
>2kuq_A Fibroblast growth factor receptor substrate 3, LI residue peptide from ALK tyrosine...; chimera, SNT-2, PTB domain, HALK, structural genomics; NMR {Homo sapiens} PDB: 2yt2_A
Probab=28.41 E-value=55 Score=28.30 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=18.6
Q ss_pred hhhHHHhHHHHHHhhhccccCCC
Q 008287 94 LENVHALFDEYIQRASQCLASSS 116 (571)
Q Consensus 94 ~~~~~~~~~~~~~~~s~~~ss~~ 116 (571)
=|.+|.+|+..||.-+.++..++
T Consensus 94 ~e~If~~l~~~iq~~si~~~~~p 116 (153)
T 2kuq_A 94 AEEIFNLLQDLMQCNSINVMEEP 116 (153)
T ss_dssp HHHHHHHHHHHHHSSCCCCCCCC
T ss_pred HHHHHHHHHHHHhcCcccccCCC
Confidence 46699999999999988776554
No 174
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=28.40 E-value=24 Score=30.18 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=26.5
Q ss_pred hhhhHHHHH--HHHHHhhcCCCCChhHHHHHHHHHHhhchhcc
Q 008287 40 NVEKEDQAR--VESIARQTKSPDVPEELFMVLQEMQKNLVYFQ 80 (571)
Q Consensus 40 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (571)
+....+++| ||-|. .+.+++.+.++.+|||...++|..|
T Consensus 67 ~~T~~dKaRrLLDlV~--sKGe~a~e~Ll~~Lqql~day~dl~ 107 (144)
T 4e9m_A 67 CPTQPDKVRKILDLVQ--SKGEEVSEFFLYLLQQLADAYVDLR 107 (144)
T ss_dssp SSSHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHSGGGH
T ss_pred cCChHHHHHHHHHHHH--HhhHHHHHHHHHHHHHccccccchh
Confidence 333444433 45444 5666777799999999999998665
No 175
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=26.85 E-value=1.2e+02 Score=25.64 Aligned_cols=61 Identities=11% Similarity=0.185 Sum_probs=43.3
Q ss_pred chhhhhHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHH
Q 008287 2 ESCVQSIDEAVEEIMRIHKSLPERPGIEEIEAAKTLIRNVEKEDQARVESIARQTKSPDVPEELFMVL 69 (571)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (571)
+.|.+-.+++|+++-+..+.|-.+ .+.-+++.+-++=-..+.+.+.+.... +++..+...+
T Consensus 73 ~dC~e~y~~a~~~L~~a~~~l~~~----~~~d~~t~lSaAlt~~~tC~dgf~~~~---~~~~~l~~~~ 133 (153)
T 1x91_A 73 RSCVDEYESAIGNLEEAFEHLASG----DGMGMNMKVSAALDGADTCLDDVKRLR---SVDSSVVNNS 133 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHHHHTTCS---SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHccHhHHHHHhccCC---CCcCHHHHHh
Confidence 567888889999888888887644 255667777777788889999987432 4555554433
No 176
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=25.22 E-value=49 Score=19.03 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=9.3
Q ss_pred CChhHHHHHHHHHHhh
Q 008287 60 DVPEELFMVLQEMQKN 75 (571)
Q Consensus 60 ~~~~~~~~~~~~~~~~ 75 (571)
++++|+ -+.||+||-
T Consensus 1 ~m~PE~-~iAqELRRI 15 (26)
T 2wh6_B 1 DMRPEI-WIAQELRRI 15 (26)
T ss_dssp CCHHHH-HHHHHHHHH
T ss_pred CCChHH-HHHHHHHHH
Confidence 345565 367888873
No 177
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=24.09 E-value=1e+02 Score=23.03 Aligned_cols=41 Identities=27% Similarity=0.420 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 008287 28 IEEIEAAKTLIRNVEKEDQARVESIARQTKSPDVPEELFMVLQ 70 (571)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (571)
.+||...+.++..-+.| +.++..++.-+.-+-|.+|+.|+|
T Consensus 18 l~eV~~GE~L~~~g~~~--~~~~hf~nAl~Vc~qP~~LL~i~q 58 (73)
T 3ax2_A 18 LEEIQLGEELLAQGDYE--KGVDHLTNAIAVCGQPQQLLQVLQ 58 (73)
T ss_dssp HHHHHHHHHHHHTTCHH--HHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHH--HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 36888888888877655 445555554445566778877775
No 178
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=22.85 E-value=43 Score=27.93 Aligned_cols=50 Identities=18% Similarity=0.271 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhH---------------HHHHHHHHHhhhhHHHHHHHHHHhhc
Q 008287 7 SIDEAVEEIMRIHKSLPERPGIEE---------------IEAAKTLIRNVEKEDQARVESIARQT 56 (571)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (571)
....-+..++|+|.+|=.|||-.. +-||..+++-...|.++-|++||++.
T Consensus 36 ~~Nr~~~kl~~~~~eLk~r~Gd~R~aLl~Ll~H~n~~VRl~AA~~~L~~~p~~A~~vLe~ia~~~ 100 (123)
T 2i9c_A 36 RFNRLFGVMAEIADELKARDGDQRTALLSLFEYPNMQVRLQAAKLTLAVAPVKAREQLEAIVSSK 100 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCGGGGGGGGGGSSCHHHHHHHHHTTTTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCccHHHHHHHHHHhhChHHHHHHHHHHHhCC
Confidence 556678899999999999988433 45777777766777888888888653
No 179
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.37 E-value=94 Score=24.60 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=26.4
Q ss_pred CCCccc-chhcCCCCccEEEcccCCCCCcc-hhhcCCCCccEEEccCC
Q 008287 277 RIVAVP-ATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGN 322 (571)
Q Consensus 277 ~i~~l~-~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n 322 (571)
.++.+. ..|.++.+|+.+.|-.+ ++.+. ..|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 445553 35677777777777553 44442 35666777777766553
No 180
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=21.36 E-value=1.1e+02 Score=23.70 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=22.0
Q ss_pred HhhhhHHHHHHHHHHhhcCCCCC-hhHHHHHHH
Q 008287 39 RNVEKEDQARVESIARQTKSPDV-PEELFMVLQ 70 (571)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 70 (571)
+...+|-+++++.+..+=...|+ |+||...+-
T Consensus 51 ~~~~~er~~Kl~~~~e~l~~~GI~~eeL~~~~~ 83 (86)
T 3nr7_A 51 AAEVEERTRKLQQYREMLIADGIDPNELLNSMA 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhc
Confidence 45556677788888876666666 667776553
No 181
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=20.44 E-value=1e+02 Score=25.95 Aligned_cols=61 Identities=11% Similarity=0.231 Sum_probs=39.8
Q ss_pred chhhhhHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCChhHHHHHH
Q 008287 2 ESCVQSIDEAVEEIMRIHKSLPERPGIEEIEAAKTLIRNVEKEDQARVESIARQTKSPDVPEELFMVL 69 (571)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (571)
+.|.+-.+++|+++-+....|-.+ ...-+++.+.++=-..+.+.+.+.... +++..+....
T Consensus 73 ~dC~e~y~~a~~~L~~a~~~l~~~----~~~d~~t~lSaAlt~~~tC~dgf~~~~---~~~~~l~~~~ 133 (153)
T 1xg2_B 73 ETCSENYADAIDSLGQAKQFLTSG----DYNSLNIYASAAFDGAGTCEDSFEGPP---NIPTQLHQAD 133 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHHHHHCCSSS---CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHhcccchHHHHhccCC---CCCcHHHHHH
Confidence 457777788888887777776433 245566777777777888888886322 4555554433
Done!