BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008289
(571 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O5R|A Chain A, Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec
6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (Tm1351)
From Thermotoga Maritima At 2.5 A Resolution
Length = 481
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/479 (43%), Positives = 288/479 (60%), Gaps = 33/479 (6%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
VRVRFAPSPTG LHVGGARTALFN+LFAR + GKF+LRIEDTDLERS +E EE + + L
Sbjct: 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLXESLR 73
Query: 116 WLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKL 175
WLGL WDEGP VGGD+GPYRQSER +Y+++A++L++ G Y + EE+E+ +E
Sbjct: 74 WLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEXREKLLS 133
Query: 176 KQLPPVYTGKWATATDA-EVQKELE-RGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTL 233
+ P Y+ + D E ++E E +G F+ P+ + ++D+++GEV + +
Sbjct: 134 EGKAPHYSQEXFEKFDTPERRREYEEKGLRPAVFFKXPRKDYV-LNDVVKGEVVFKTGAI 192
Query: 234 GDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHV 293
GDFVI RSNG P YNF VDD I+HVIR ++HL NTLRQ +Y+A + P FAHV
Sbjct: 193 GDFVIXRSNGLPTYNFACVVDDXLXEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAHV 252
Query: 294 SLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKF 353
S IL PD KLSKRHGATSV FR+ GYLP+A+VNYLALLGW E TL++L+ F
Sbjct: 253 STILGPDGKKLSKRHGATSVEAFRDXGYLPEALVNYLALLGWSHPEGKELLTLEELISSF 312
Query: 354 TIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQ 413
+++R++ + AIFD KL+W NG +LR P +L +L ++ GI +DE +
Sbjct: 313 SLDRLSPNPAIFDPQKLKWXNGYYLRNXPIEKLAELAKPFFEKAGI------KIIDE--E 364
Query: 414 LLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDNLSEVAAHLLAAYDGGELLAA 473
K +++ + + LS E + ED A + + E+ +
Sbjct: 365 YFKKVLEITKERVEVLSEF----------PEESRFFFED-----PAPVEIPEEXKEVFSQ 409
Query: 474 LEE--GHAGW--QKWVKGFGKTLKRKG---KSLFMPLRVLLTGKLHGPDMGASILLIHK 525
L+E + W ++ F K LK+ G K + LR +LTG+ GP++ I L+ K
Sbjct: 410 LKEELQNVRWTXEEITPVFKKVLKQHGVKPKEFYXTLRRVLTGREEGPELVNIIPLLGK 468
>pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 592
Score = 345 bits (884), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 203/482 (42%), Positives = 281/482 (58%), Gaps = 42/482 (8%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
VRVRFAPSPTG+LHVGGARTALFN++FAR +GGKF+LRIEDTD ERS++E E+ +L+ L
Sbjct: 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 189
Query: 116 WLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKL 175
W GLDWDEGP +GGD+GPYRQSER +Y++YA+KL+E Y E + KE+
Sbjct: 190 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKE--DPSKELFTT 247
Query: 176 KQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGD 235
+ P Y E+G P T +F+V G + DL++G + ++ TL D
Sbjct: 248 YEYPHEYK---------------EKGHPVTIKFKVLPGKT-SFEDLLKGYMEFDNSTLED 291
Query: 236 FVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSL 295
F+IM+SNG P YNF V VDD M ISHV R E+HL NT +Q +IY+A G+ P F H+ L
Sbjct: 292 FIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPL 351
Query: 296 ILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGW---GDGTENEFFTLKQLVEK 352
IL DR+ LSKRHGATSV FR G L +A++NYLALLGW GD E FT+++ ++
Sbjct: 352 ILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGD----EIFTIEEKLQS 407
Query: 353 FTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAI 412
F + ++ G IFD KL W+NG+H+R I +L + E K G + P VDE
Sbjct: 408 FDPKDISNKGVIFDYQKLEWVNGKHMRRIDLEDLKREFIEWAKYAG----KEIPSVDE-- 461
Query: 413 QLLKDGIDLVPDSDKALSNL--LSYPLRDTLTSSEGKSIVEDNLSEVAAHLLAAYDGGEL 470
+ + + + + LS L + YP + E K VE L A + E
Sbjct: 462 RYFSETLRICREKVNTLSQLYDIMYPFMNDDYEYE-KDYVEKFLKREEAERVLE----EA 516
Query: 471 LAALEEGHAGWQKWVKGFGKTLKRKG----KSLFMPLRVLLTGKLHGPDMGASILLIHKA 526
A ++ ++ + ++ + L KG K +F +R +TGKL P + +I ++ K
Sbjct: 517 KKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKE 576
Query: 527 GT 528
T
Sbjct: 577 RT 578
>pdb|3AFH|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With A Glutamyl-Amp
Analog
Length = 488
Score = 344 bits (883), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 203/482 (42%), Positives = 281/482 (58%), Gaps = 42/482 (8%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
VRVRFAPSPTG+LHVGGARTALFN++FAR +GGKF+LRIEDTD ERS++E E+ +L+ L
Sbjct: 26 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 85
Query: 116 WLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKL 175
W GLDWDEGP +GGD+GPYRQSER +Y++YA+KL+E Y E + KE+
Sbjct: 86 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKE--DPSKELFTT 143
Query: 176 KQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGD 235
+ P Y E+G P T +F+V G + DL++G + ++ TL D
Sbjct: 144 YEYPHEYK---------------EKGHPVTIKFKVLPGKT-SFEDLLKGYMEFDNSTLED 187
Query: 236 FVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSL 295
F+IM+SNG P YNF V VDD M ISHV R E+HL NT +Q +IY+A G+ P F H+ L
Sbjct: 188 FIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPL 247
Query: 296 ILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGW---GDGTENEFFTLKQLVEK 352
IL DR+ LSKRHGATSV FR G L +A++NYLALLGW GD E FT+++ ++
Sbjct: 248 ILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGD----EIFTIEEKLQS 303
Query: 353 FTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAI 412
F + ++ G IFD KL W+NG+H+R I +L + E K G + P VDE
Sbjct: 304 FDPKDISNKGVIFDYQKLEWVNGKHMRRIDLEDLKREFIEWAKYAG----KEIPSVDE-- 357
Query: 413 QLLKDGIDLVPDSDKALSNL--LSYPLRDTLTSSEGKSIVEDNLSEVAAHLLAAYDGGEL 470
+ + + + + LS L + YP + E K VE L A + E
Sbjct: 358 RYFSETLRICREKVNTLSQLYDIMYPFMNDDYEYE-KDYVEKFLKREEAERVLE----EA 412
Query: 471 LAALEEGHAGWQKWVKGFGKTLKRKG----KSLFMPLRVLLTGKLHGPDMGASILLIHKA 526
A ++ ++ + ++ + L KG K +F +R +TGKL P + +I ++ K
Sbjct: 413 KKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKE 472
Query: 527 GT 528
T
Sbjct: 473 RT 474
>pdb|3AKZ|B Chain B, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|D Chain D, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|C Chain C, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
Length = 487
Score = 344 bits (882), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 203/482 (42%), Positives = 281/482 (58%), Gaps = 42/482 (8%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
VRVRFAPSPTG+LHVGGARTALFN++FAR +GGKF+LRIEDTD ERS++E E+ +L+ L
Sbjct: 25 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 84
Query: 116 WLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKL 175
W GLDWDEGP +GGD+GPYRQSER +Y++YA+KL+E Y E + KE+
Sbjct: 85 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKE--DPSKELFTT 142
Query: 176 KQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGD 235
+ P Y E+G P T +F+V G + DL++G + ++ TL D
Sbjct: 143 YEYPHEYK---------------EKGHPVTIKFKVLPGKT-SFEDLLKGYMEFDNSTLED 186
Query: 236 FVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSL 295
F+IM+SNG P YNF V VDD M ISHV R E+HL NT +Q +IY+A G+ P F H+ L
Sbjct: 187 FIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPL 246
Query: 296 ILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGW---GDGTENEFFTLKQLVEK 352
IL DR+ LSKRHGATSV FR G L +A++NYLALLGW GD E FT+++ ++
Sbjct: 247 ILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGD----EIFTIEEKLQS 302
Query: 353 FTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAI 412
F + ++ G IFD KL W+NG+H+R I +L + E K G + P VDE
Sbjct: 303 FDPKDISNKGVIFDYQKLEWVNGKHMRRIDLEDLKREFIEWAKYAG----KEIPSVDE-- 356
Query: 413 QLLKDGIDLVPDSDKALSNL--LSYPLRDTLTSSEGKSIVEDNLSEVAAHLLAAYDGGEL 470
+ + + + + LS L + YP + E K VE L A + E
Sbjct: 357 RYFSETLRICREKVNTLSQLYDIMYPFMNDDYEYE-KDYVEKFLKREEAERVLE----EA 411
Query: 471 LAALEEGHAGWQKWVKGFGKTLKRKG----KSLFMPLRVLLTGKLHGPDMGASILLIHKA 526
A ++ ++ + ++ + L KG K +F +R +TGKL P + +I ++ K
Sbjct: 412 KKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKE 471
Query: 527 GT 528
T
Sbjct: 472 RT 473
>pdb|4GRI|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Borrelia Burgdorferi Bound To Glutamic Acid And Zinc
pdb|4GRI|B Chain B, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Borrelia Burgdorferi Bound To Glutamic Acid And Zinc
Length = 512
Score = 339 bits (869), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 188/496 (37%), Positives = 283/496 (57%), Gaps = 18/496 (3%)
Query: 57 RVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSW 116
RVR+APSPTG H+GG RTALFNY FA+S GGKF+LRIEDTD R + E+E + L W
Sbjct: 26 RVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKW 85
Query: 117 LGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLK 176
LG+ +DEGP VGGDY PY QS+R+++YKQYA L+ESGH Y C+CS E LE++K+I +
Sbjct: 86 LGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNIN 145
Query: 177 QLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSW-NLDTLGD 235
++PP Y ++ EV+ L + RF++P G D++ G ++W N D D
Sbjct: 146 KMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKIPLEGDTSFDDILLGRITWANKDISPD 205
Query: 236 FVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSL 295
VI++S+G P Y+ VDD M I+HV+RA+E + + L+YKA + P + H+ +
Sbjct: 206 PVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFKWKPPIYCHLPM 265
Query: 296 ILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTI 355
++ D KLSKRHG+T++ QF E GYLP+A++NY+ LLGW + EFF+ L + F+I
Sbjct: 266 VMGNDGQKLSKRHGSTALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKNDLEQFFSI 325
Query: 356 ERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLL 415
E++NKS AIFD KL + N ++R +L L+ ++ G +++ P E Q L
Sbjct: 326 EKINKSPAIFDYHKLDFFNSYYIREKKDEDLFNLLLPFFQKKGYVSK---PSTLEENQKL 382
Query: 416 KDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDNLSEVAAHLLAAYDGGELLAALE 475
K I L+ K LS+ L+ +T + I NL E + A + +L ++
Sbjct: 383 KLLIPLIKSRIKKLSDALN------MTKFFYEDIKSWNLDEFLSRKKTAKEVCSILELIK 436
Query: 476 EGHAGWQ--------KWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAG 527
G++ K F ++ K + +P+R+ G P + S+ LI K+
Sbjct: 437 PILEGFEKRSSEENDKIFYDFAESNGFKLGEILLPIRIAALGSKVSPPLFDSLKLIGKSK 496
Query: 528 THGIVSPRAEFVTLDE 543
+ EF+ ++E
Sbjct: 497 VFERIKLAQEFLRINE 512
>pdb|2CFO|A Chain A, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
pdb|2CFO|B Chain B, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
Length = 492
Score = 318 bits (816), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 192/482 (39%), Positives = 262/482 (54%), Gaps = 26/482 (5%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
VRVR APSPTGNLH+G ARTA+FN+L+AR +GGKF+LRIEDTD ERS E E +L+ L
Sbjct: 2 VRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQ 61
Query: 116 WLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKL 175
WLGL WDE GPY QS+R LY+Q LL+ G Y C+C+ EELE ++ K
Sbjct: 62 WLGLTWDE--------GPYFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKA 113
Query: 176 KQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWN-LDTLG 234
K P Y + T E G RF++ ++ DL+RG VSW D G
Sbjct: 114 KGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGG 173
Query: 235 DFVIMRSN-----GQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPY 289
D VI R+ G P+YN V VDD M I+ VIR E+H+ NT +Q L+Y+ALG + P
Sbjct: 174 DMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPN 233
Query: 290 FAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWG--DGTENEFFTLK 347
FAH LIL KLSKR G TS+ FR MGYL A+ NY+ LLGW +G E FTL
Sbjct: 234 FAHTPLILNSTGQKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWSPPEGV-GELFTLD 292
Query: 348 QLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGIL--TESKG 405
+ F+ ER+NK+GA FD KL W+N Q+++ + E + W+ G E
Sbjct: 293 LAAKHFSFERINKAGARFDWDKLNWLNRQYIQQLEPEEFLAELIPLWQGAGYAFDEERDR 352
Query: 406 PFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDNLSEVAAHLLAAY 465
P++ + QLL+ G++ + +A+ + + SE + L + + + AY
Sbjct: 353 PWLFDLAQLLQPGLNTL---REAIDQGAVFFIPSVTFDSEAMA----QLGQPQSATILAY 405
Query: 466 DGGELLAALEEGHAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHK 525
L A A Q+ ++ K K + LR LTG +HGPD+ A+ ++H+
Sbjct: 406 LLEHLPAEPALTVAMGQQLIQQAAKAAGVKKGATMRTLRAALTGAVHGPDLMAAWQILHQ 465
Query: 526 AG 527
G
Sbjct: 466 RG 467
>pdb|1J09|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp And Glu
pdb|1N75|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp.
pdb|1N77|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N77|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N78|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|1N78|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|2CUZ|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With L-Glutamate
pdb|2CV0|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV0|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV1|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV1|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV2|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2CV2|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2DXI|A Chain A, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
pdb|2DXI|B Chain B, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
Length = 468
Score = 307 bits (787), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 177/474 (37%), Positives = 271/474 (57%), Gaps = 23/474 (4%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
V R APSPTG+ HVG A ALFNY +AR GG+F++RIEDTD R +EE +L L
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 116 WLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKL 175
WLGL +DEGP VGG +GPYRQSER LY++YA++LL+ G YR F + EELE++++
Sbjct: 62 WLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG- 120
Query: 176 KQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGD 235
Y G+ E ++ RG P+ R +VP+ G+ ++ D +RG V ++ + D
Sbjct: 121 -----GYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPD 175
Query: 236 FVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSL 295
V+++S+G P Y+ VDD M ++ VIRAEE L +T L+Y+A G+ P F H+ L
Sbjct: 176 VVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL 235
Query: 296 ILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTI 355
+ PD++K+SKR TS+ ++ G+LP+A+ NYL L+G+ E FTL++ ++ FT
Sbjct: 236 LRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTW 295
Query: 356 ERVNKSGAIFDSTKLRWMNGQHLRAIPS-NELTKLIGERWKSTGILTESKGPFVDEAIQL 414
ERV+ G +FD KLRWMNG+++R + S E+ + + + G+ ES+ ++ A++L
Sbjct: 296 ERVSLGGPVFDLEKLRWMNGKYIREVLSLEEVAERVKPFLREAGLSWESEA-YLRRAVEL 354
Query: 415 LKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDN---LSEVAAHLLAAYDGGELL 471
++ D + + + L + D S + + +E+ L E+ L A + E
Sbjct: 355 MRPRFDTLKEFPEKARYLFT---EDYPVSEKAQRKLEEGLPLLKELYPRLRAQEEWTE-- 409
Query: 472 AALEEGHAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHK 525
AALE ++GF K + PLR LTG L P + + L+ K
Sbjct: 410 AALE-------ALLRGFAAEKGVKLGQVAQPLRAALTGSLETPGLFEILALLGK 456
>pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1G59|C Chain C, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1GLN|A Chain A, Architectures Of Class-Defining And Specific Domains Of
Glutamyl-Trna Synthetase
Length = 468
Score = 302 bits (774), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 175/474 (36%), Positives = 268/474 (56%), Gaps = 23/474 (4%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
V R APSPTG+ HVG A ALFNY +AR GG+F++RIEDTD R +EE +L L
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 116 WLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKL 175
WLGL +DEGP V GPYRQSER LY++YA++LL+ G YR F + EELE++++
Sbjct: 62 WLGLSYDEGPDVAAPTGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG- 120
Query: 176 KQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGD 235
Y G+ E ++ RG P+ R +VP+ G+ ++ D +RG V ++ + D
Sbjct: 121 -----GYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPD 175
Query: 236 FVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSL 295
V+++S+G P Y+ VDD M ++ VIRAEE L +T L+Y+A G+ P F H+ L
Sbjct: 176 VVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL 235
Query: 296 ILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTI 355
+ PD++K+SKR TS+ ++ G+LP+A+ NYL L+G+ E FTL++ ++ FT
Sbjct: 236 LRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTW 295
Query: 356 ERVNKSGAIFDSTKLRWMNGQHLRAIPS-NELTKLIGERWKSTGILTESKGPFVDEAIQL 414
ERV+ G +FD KLRWMNG+++R + S E+ + + + G+ ES+ ++ A++L
Sbjct: 296 ERVSLGGPVFDLEKLRWMNGKYIREVLSLEEVAERVKPFLREAGLSWESEA-YLRRAVEL 354
Query: 415 LKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDN---LSEVAAHLLAAYDGGELL 471
++ D + + + L + D S + + +E+ L E+ L A + E
Sbjct: 355 MRPRFDTLKEFPEKARYLFT---EDYPVSEKAQRKLEEGLPLLKELYPRLRAQEEWTE-- 409
Query: 472 AALEEGHAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHK 525
AALE ++GF K + PLR LTG L P + + L+ K
Sbjct: 410 AALE-------ALLRGFAAEKGVKLGQVAQPLRAALTGSLETPGLFEILALLGK 456
>pdb|4G6Z|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Burkholderia Thailandensis Bound To L-Glutamate
Length = 490
Score = 300 bits (768), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 180/474 (37%), Positives = 258/474 (54%), Gaps = 25/474 (5%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
VR RFAPSPTG +H+G R+AL+ + FAR G FVLRIEDTD+ERS++E+ +A+L+ ++
Sbjct: 26 VRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMA 85
Query: 116 WLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKL 175
WLGLD+DEGP Y Q +R Y++ ++ E G VY + S EEL+ ++E +
Sbjct: 86 WLGLDYDEGP--------YYQMQRMDRYREVLAQMQEKGLVYPXYMSTEELDALRERQRA 137
Query: 176 KQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGD 235
P Y G W +V E G RFR P G++ D ++G V + + L D
Sbjct: 138 AGEKPRYDGTW-RPEPGKVLPEPPAGVAPVLRFRNPLTGTVAWDDAVKGRVEISNEELDD 196
Query: 236 FVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSL 295
V+ R +G P+YNFCV VDD M I+HVIR ++H+ NT RQ I +ALG +P +AH+
Sbjct: 197 LVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGGEVPVYAHLPT 256
Query: 296 ILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTI 355
+L K+SKRHGA SV +R+ GYLP+A++NYLA LGW G + E FT +Q VE F +
Sbjct: 257 VLNEQGEKMSKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSHG-DAEIFTREQFVEWFDL 315
Query: 356 ERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTES--KGPFVDEAIQ 413
E + KS A +D KL W+N +++ L L + + GI + +GP + +
Sbjct: 316 EHLGKSPAQYDHNKLNWLNNHYIKEADDARLAGLAKPFFAALGIDAGAIEQGPDLVSVMG 375
Query: 414 LLKDGIDLVPD--SDKALSNLLSYPLRDTLTSSEGKSIVEDNLSEVAAHLLAAYDGGELL 471
L+KD V + + A+ P D L + V L E AA L E +
Sbjct: 376 LMKDRASTVKEIAENSAMFYRAPAPGADAL-AQHVTDAVRPALVEFAAALKTVEWTKEAI 434
Query: 472 AALEEGHAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHK 525
AA +K K K L MP+R+L+ G H P + A +LL +
Sbjct: 435 AAA----------LKAVLGAHKLKMPQLAMPVRLLVAGTTHTPSIDAVLLLFGR 478
>pdb|3PNY|A Chain A, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
pdb|3PNY|B Chain B, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
Length = 505
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 202/348 (58%), Gaps = 7/348 (2%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
VRVRF PSPTG HVG RTALFN+ +AR GG FV RIEDTD +R ++ES A+L L
Sbjct: 22 VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 81
Query: 116 WLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKL 175
WLGLDWDEGP VGG YGPYRQS+R +Y+ +LL +G Y F + EE+E + +A
Sbjct: 82 WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEA-RHVAAG 140
Query: 176 KQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGD 235
+ Y TDA+ L G R R+P L +DL+RG V++ ++ D
Sbjct: 141 RNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPD-DDLAWNDLVRGPVTFAAGSVPD 199
Query: 236 FVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNT-----LRQALIYKALGFSMPYF 290
F + R++G P+Y DDA M I+HV+R E+ LP+T L QALI + +P F
Sbjct: 200 FALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERIPKF 259
Query: 291 AHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLV 350
AH+ +L KLSKR +++ R+ G++P+ ++NYLALLGW +++ F L ++V
Sbjct: 260 AHLPTVLGEGTKKLSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDEMV 319
Query: 351 EKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTG 398
F + VN S A FD K +N +H+R + + T + + + G
Sbjct: 320 AAFDVADVNSSPARFDQKKADALNAEHIRMLDVGDFTVRLRDHLDTHG 367
>pdb|2JA2|A Chain A, Mycobacterium Tuberculosis Glutamyl-Trna Synthetase
Length = 498
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 202/348 (58%), Gaps = 7/348 (2%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
VRVRF PSPTG HVG RTALFN+ +AR GG FV RIEDTD +R ++ES A+L L
Sbjct: 7 VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 66
Query: 116 WLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKL 175
WLGLDWDEGP VGG YGPYRQS+R +Y+ +LL +G Y F + EE+E + +A
Sbjct: 67 WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEA-RHVAAG 125
Query: 176 KQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGD 235
+ Y TDA+ L G R R+P L +DL+RG V++ ++ D
Sbjct: 126 RNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPD-DDLAWNDLVRGPVTFAAGSVPD 184
Query: 236 FVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNT-----LRQALIYKALGFSMPYF 290
F + R++G P+Y DDA M I+HV+R E+ LP+T L QALI + +P F
Sbjct: 185 FALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERIPKF 244
Query: 291 AHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLV 350
AH+ +L KLSKR +++ R+ G++P+ ++NYLALLGW +++ F L ++V
Sbjct: 245 AHLPTVLGEGTKKLSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDEMV 304
Query: 351 EKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTG 398
F + VN S A FD K +N +H+R + + T + + + G
Sbjct: 305 AAFDVADVNSSPARFDQKKADALNAEHIRMLDVGDFTVRLRDHLDTHG 352
>pdb|3PNV|A Chain A, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
pdb|3PNV|B Chain B, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
Length = 505
Score = 270 bits (690), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 202/348 (58%), Gaps = 7/348 (2%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
VRVRF PSPTG HVG RTALFN+ +AR GG FV RIEDTD +R ++ES A+L L
Sbjct: 22 VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 81
Query: 116 WLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKL 175
WLGLDWDEGP VGG YGPYRQS+R +Y+ +LL +G Y F + EE+E + +A
Sbjct: 82 WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEA-RHVAAG 140
Query: 176 KQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGD 235
+ Y TDA+ L G R R+P L +DL+RG V++ ++ D
Sbjct: 141 RNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPD-DDLAWNDLVRGPVTFAAGSVPD 199
Query: 236 FVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNT-----LRQALIYKALGFSMPYF 290
F + R++G P+Y DDA M I+HV+R E+ LP+T L QALI + +P F
Sbjct: 200 FALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERIPKF 259
Query: 291 AHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLV 350
AH+ +L KLSKR +++ R+ G++P+ ++NYLALLGW +++ F L ++V
Sbjct: 260 AHLPTVLGEGTKKLSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDEMV 319
Query: 351 EKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTG 398
F + VN S A FD K +N +H+R + + T + + + G
Sbjct: 320 AAFDVADVNSSPARFDQKKADALNAEHIRMLDVGDFTVRLRDHLDTHG 367
>pdb|3AII|A Chain A, Archaeal Non-Discriminating Glutamyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
Length = 553
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 128/253 (50%), Gaps = 38/253 (15%)
Query: 52 VDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVL 111
V G+V +RFAP+P+G LH+G AR A+ N+ +AR G+ +LRIEDTD R E+ + +
Sbjct: 93 VKGEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIP 152
Query: 112 QDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKE 171
DL WLG++WDE QS+R Y +Y +KL+E G Y C C EE ++K
Sbjct: 153 ADLEWLGVEWDET---------VIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKN 203
Query: 172 IAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLD 231
G+ ++ L+R + F + +G ++ ++ +++
Sbjct: 204 -----------RGEACHCRSLGFRENLQR---WREMFEMKEGSAVV---RVKTDLNHPNP 246
Query: 232 TLGDFVIM------------RSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALI 279
+ D+V M R P+ NF V VDD + ++HV+R ++HL N +Q +
Sbjct: 247 AIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYL 306
Query: 280 YKALGFSMPYFAH 292
Y+ LG+ P F H
Sbjct: 307 YRHLGWEPPEFIH 319
>pdb|1NZJ|A Chain A, Crystal Structure And Activity Studies Of Escherichia Coli
Yadb Orf
pdb|4A91|A Chain A, Crystal Structure Of The Glutamyl-Queuosine Trnaasp
Synthetase From E.Coli Complexed With L-Glutamate
Length = 298
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 159/323 (49%), Gaps = 40/323 (12%)
Query: 53 DGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQ 112
D Q RFAPSP+G LH G AL +YL AR++ G++++RIED D R + E +L+
Sbjct: 3 DTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILR 62
Query: 113 DLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEI 172
L GL WD GD QS+R+ Y++ L E G Y C C+
Sbjct: 63 QLEHYGLHWD------GDV--LWQSQRHDAYREALAWLHEQGLSYYCTCTR--------- 105
Query: 173 AKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSL-KISDLIRGEVSWNLD 231
A+++ + +Y G + L G P R+ + + + +D +RG + + +
Sbjct: 106 ARIQSIGGIYDGHC---------RVLHHG-PDNAAVRIRQQHPVTQFTDQLRGIIHAD-E 154
Query: 232 TLG--DFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPY 289
L DF+I R +G YN V VDD ++ ++R + + T+RQ +Y+ G+ +P
Sbjct: 155 KLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPD 214
Query: 290 FAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQL 349
+ H+ L L P +KLSK++ A ++ + G ++ L LG + F+++Q+
Sbjct: 215 YIHLPLALNPQGAKLSKQNHAPALPK----GDPRPVLIAALQFLGQQAEAHWQDFSVEQI 270
Query: 350 ----VEKFTIERVNKSGAIFDST 368
V+ + + V +S AI +ST
Sbjct: 271 LQSAVKNWRLTAVPES-AIVNST 292
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
Deinococcus Radiodurans
Length = 851
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 8/128 (6%)
Query: 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDL 114
+V RF P P+G H+G +L ++ AR GG+F LR++DT+ E + +E +++ DL
Sbjct: 66 RVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDL 125
Query: 115 SWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAK 174
WLGLDW E DY Y YA++L+ G Y S EEL +++ A
Sbjct: 126 KWLGLDWGEHFYYASDY--------FDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNAT 177
Query: 175 LKQLPPVY 182
P Y
Sbjct: 178 TPGTPSPY 185
>pdb|2RD2|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L- Glutaminyl)-Sulfamoyl]adenosine
pdb|2RE8|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L-Glutamyl)-Sulfamoyl]adenosine
Length = 556
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 93/235 (39%), Gaps = 43/235 (18%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
V RF P P G LH+G A++ N+ A+ G+ LR +DT+ + E E++ D+
Sbjct: 28 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 87
Query: 116 WLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKL 175
WLG W DY + YA +L+ G Y + E++ + + L
Sbjct: 88 WLGFHWSGNVRYSSDYFDQLHA--------YAIELINKGLAYVDELTPEQIREYR--GTL 137
Query: 176 KQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGD 235
Q GK + D V++ L ++ GG + +R ++ D
Sbjct: 138 TQ-----PGKNSPYRDRSVEENLALFE------KMRAGGFEEGKACLRAKI----DMASP 182
Query: 236 FVIMR-------------SNGQ-----PVYNFCVTVDDATMAISHVIRAEEHLPN 272
F++MR G P+Y+F + DA I+H +R E N
Sbjct: 183 FIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLRTLEFQDN 237
>pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed
With A Trna- Gln Mutant And An Active-Site Inhibitor
pdb|1EUY|A Chain A, Glutaminyl-Trna Synthetase Complexed With A Trna Mutant
And An Active Site Inhibitor
pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Glutamine Trna Bound
To Glutamine Aminoacyl Trna Synthetase
Length = 548
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
V RF P P G LH+G A++ N+ A+ G+ LR +DT+ + E E++ D+
Sbjct: 28 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 87
Query: 116 WLGLDWDEGPGVGGDY 131
WLG W DY
Sbjct: 88 WLGFHWSGNVRYSSDY 103
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With
Glutamine Transfer Rna
Length = 553
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
V RF P P G LH+G A++ N+ A+ G+ LR +DT+ + E E++ D+
Sbjct: 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 86
Query: 116 WLGLDWDEGPGVGGDY 131
WLG W DY
Sbjct: 87 WLGFHWSGNVRYSSDY 102
>pdb|1NYL|A Chain A, Unliganded Glutaminyl-Trna Synthetase
Length = 539
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
V RF P P G LH+G A++ N+ A+ G+ LR +DT+ + E E++ D+
Sbjct: 20 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 79
Query: 116 WLGLDWDEGPGVGGDY 131
WLG W DY
Sbjct: 80 WLGFHWSGNVRYSSDY 95
>pdb|1O0B|A Chain A, Crystal Structure Of L-Glutamine And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
pdb|1O0C|A Chain A, Crystal Structure Of L-glutamate And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
Length = 554
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
V RF P P G LH+G A++ N+ A+ G+ LR +DT+ + E E++ D+
Sbjct: 28 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 87
Query: 116 WLGLDWDEGPGVGGDY 131
WLG W DY
Sbjct: 88 WLGFHWSGNVRYSSDY 103
>pdb|1GSG|P Chain P, Structure Of E.Coli Glutaminyl-Trna Synthetase Complexed
With Trnagln And Atp At 2.8 Angstroms Resolution
pdb|1GTR|A Chain A, Structural Basis Of Anticodon Loop Recognition By
Glutaminyl-Trna Synthetase
pdb|1GTS|A Chain A, Structural Basis For Transfer Rna Aminoaceylation By
Escherichia Coli Glutaminyl-Trna Synthetase
pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed With Trna And An
Amino Acid Analog
pdb|1ZJW|A Chain A, Glutaminyl-trna Synthetase Complexed To Glutamine And
2'deoxy A76 Glutamine Trna
Length = 553
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
V RF P P G LH+G A++ N+ A+ G+ LR +DT+ + E E++ D+
Sbjct: 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 86
Query: 116 WLGLDWDEGPGVGGDY 131
WLG W DY
Sbjct: 87 WLGFHWSGNVRYSSDY 102
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With
Glutamine Transfer Rna
Length = 553
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
V RF P P G LH+G A++ N+ A+ G+ LR +DT+ + E E++ D+
Sbjct: 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 86
Query: 116 WLGLDWDEGPGVGGDY 131
WLG W DY
Sbjct: 87 WLGFHWSGNVRYSSDY 102
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With
Glutamine Transfer Rna
Length = 553
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLS 115
V RF P P G LH+G A++ N+ A+ G+ LR +DT+ + E E++ D+
Sbjct: 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 86
Query: 116 WLGLDWDEGPGVGGDY 131
WLG W DY
Sbjct: 87 WLGFHWSGNVRYSSDY 102
>pdb|2QCX|A Chain A, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
pdb|2QCX|B Chain B, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
Length = 263
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 396 STGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDNLS 455
+TG + + + L ++ +L+ S++ P + TS +S++ N +
Sbjct: 94 TTGRMASHAQGTYEAEMALHREFAELLEISEEERKAFKPSPTAYSFTSHMYRSVLSGNFA 153
Query: 456 EVAAHLLAAY----DGGELLAALEEGHAGWQKWVKGFGKTLKRK 495
E+ A LL Y + GE L + GH +QKW+ +G R+
Sbjct: 154 EILAALLPCYWLYYEVGEKLLHCDPGHPIYQKWIGTYGGDWFRQ 197
>pdb|1YAF|A Chain A, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|B Chain B, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|C Chain C, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|D Chain D, Structure Of Tena From Bacillus Subtilis
pdb|1YAK|A Chain A, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|B Chain B, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|C Chain C, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|D Chain D, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
Length = 263
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 396 STGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDNLS 455
+TG + + + L ++ +L+ S++ P + TS +S++ N +
Sbjct: 94 TTGRMASHAQGTYEAEMALHREFAELLEISEEERKAFKPSPTAYSYTSHMYRSVLSGNFA 153
Query: 456 EVAAHLLAAY----DGGELLAALEEGHAGWQKWVKGFGKTLKRK 495
E+ A LL Y + GE L + GH +QKW+ +G R+
Sbjct: 154 EILAALLPCYWLYYEVGEKLLHCDPGHPIYQKWIGTYGGDWFRQ 197
>pdb|1TYH|A Chain A, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|B Chain B, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|D Chain D, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|E Chain E, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
Length = 248
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 414 LLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDNLSEVAAHLLAAY----DGGE 469
L ++ +L+ S++ P + TS +S++ N +E+ A LL Y + GE
Sbjct: 87 LHREFAELLEISEEERKAFKPSPTAYSYTSHXYRSVLSGNFAEILAALLPCYWLYYEVGE 146
Query: 470 LLAALEEGHAGWQKWVKGFGKTLKRK 495
L + GH +QKW+ +G R+
Sbjct: 147 KLLHCDPGHPIYQKWIGTYGGDWFRQ 172
>pdb|1TO9|A Chain A, Crystal Structure Of Thi-4 Protein From Bacillus Subtilis
Length = 260
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 414 LLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDNLSEVAAHLLAAY----DGGE 469
L ++ +L+ S++ P + TS +S++ N +E+ A LL Y + GE
Sbjct: 109 LHREFAELLEISEEERKAFKPSPTAYSYTSHXYRSVLSGNFAEILAALLPCYWLYYEVGE 168
Query: 470 LLAALEEGHAGWQKWVKGFGKTLKRK 495
L + GH +QKW+ +G R+
Sbjct: 169 KLLHCDPGHPIYQKWIGTYGGDWFRQ 194
>pdb|1TO9|B Chain B, Crystal Structure Of Thi-4 Protein From Bacillus Subtilis
Length = 260
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 414 LLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDNLSEVAAHLLAAY----DGGE 469
L ++ +L+ S++ P + TS +S++ N +E+ A LL Y + GE
Sbjct: 109 LHREFAELLEISEEERKAFKPSPTAYSYTSHXYRSVLSGNFAEILAALLPCYWLYYEVGE 168
Query: 470 LLAALEEGHAGWQKWVKGFGKTLKRK 495
L + GH +QKW+ +G R+
Sbjct: 169 KLLHXDPGHPIYQKWIGTYGGDWFRQ 194
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 356 ERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGER 393
ERV SG DS + R+M ++ A P N +IGE
Sbjct: 141 ERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH 178
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|B Chain B, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|C Chain C, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|D Chain D, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|E Chain E, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|F Chain F, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|G Chain G, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|H Chain H, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
Length = 316
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 356 ERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGER-------WKSTGI-------LT 401
ERV SG I D+ + R++ G++ P N +IGE W I L
Sbjct: 142 ERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLV 201
Query: 402 ESKG 405
ESKG
Sbjct: 202 ESKG 205
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
Length = 317
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 356 ERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGER-------WKSTGI-------LT 401
ERV SG I D+ + R++ G++ P N +IGE W I L
Sbjct: 142 ERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLV 201
Query: 402 ESKG 405
ESKG
Sbjct: 202 ESKG 205
>pdb|3SFV|B Chain B, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 344
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 441 LTSSEGKSIVEDNLSEVAAHLLAAYDGGELLAALEEGHAGWQKWVKGFGKTLKRKGKSLF 500
LT SE E +LSE+ + A E L L E H G +K V+ +L+R+ +
Sbjct: 31 LTDSE-----ELSLSEINEKMKAFSKDSEKLTQLMEKHKGDEKTVQ----SLQREHHDIK 81
Query: 501 MPLRVLLTGKLHGPDMGASILLIHKAG-------THGIVSPRAEFVTLDERFKMLRQVDW 553
L L LH G + K H ++ E V +F +L++ W
Sbjct: 82 AKLANLQV--LHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHKGQFYLLQKGQW 139
Query: 554 EALKKDQPALESA 566
+A+K D ALE A
Sbjct: 140 DAIKNDPAALEKA 152
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 356 ERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGER 393
ERV SG DS + R+M ++ A P N +IGE
Sbjct: 141 ERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEH 178
>pdb|3TKL|B Chain B, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 267
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 441 LTSSEGKSIVEDNLSEVAAHLLAAYDGGELLAALEEGHAGWQKWVKGFGKTLKRKGKSLF 500
LT SE E +LSE+ + A E L L E H G +K V+ +L+R+ +
Sbjct: 72 LTDSE-----ELSLSEINEKMKAFSKDSEKLTQLMEKHKGDEKTVQ----SLQREHHDIK 122
Query: 501 MPLRVLLTGKLHGPDMGASILLIHKAG-------THGIVSPRAEFVTLDERFKMLRQVDW 553
L L LH G + K H ++ E V +F +L++ W
Sbjct: 123 AKLANLQV--LHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHKGQFYLLQKGQW 180
Query: 554 EALKKDQPALESA 566
+A+K D ALE A
Sbjct: 181 DAIKNDPAALEKA 193
>pdb|3PMM|A Chain A, The Crystal Structure Of A Possible Member Of Gh105 Family
From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 382
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 74 RTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133
R N + + + G+F+LR++D V+ W G +W G G+ G Y
Sbjct: 32 RNVTQNLVNIKDESGQFLLRLDDG-----------RVIDTKGWAGWEWTHGVGLYGIYQY 80
Query: 134 YRQS----ERNSLYKQYADKLLE 152
Y+Q+ R+ + + +AD+ E
Sbjct: 81 YQQTGDIEXRDIIDRWFADRFAE 103
>pdb|3TNF|B Chain B, Lida From Legionella In Complex With Active Rab8a
Length = 384
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 18/133 (13%)
Query: 441 LTSSEGKSIVEDNLSEVAAHLLAAYDGGELLAALEEGHAGWQKWVKGFGKTLKRKGKSLF 500
LT SE E +LSE+ + A E L L E H G +K V+ +L+R+ +
Sbjct: 55 LTDSE-----ELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQ----SLQREHHDIK 105
Query: 501 MPLRVLLTGKLHGPDMGASILLIHKAG-------THGIVSPRAEFVTLDERFKMLRQVDW 553
L L LH G + K H ++ E V + +F +L++ W
Sbjct: 106 AKLANLQV--LHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQW 163
Query: 554 EALKKDQPALESA 566
+A+K + ALE A
Sbjct: 164 DAIKNNPAALEKA 176
>pdb|1I11|A Chain A, Solution Structure Of The Dna Binding Domain, Sox-5 Hmg
Box From Mouse
Length = 81
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 378 LRAIP---SNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPD 424
L+A P ++ ++K++G RWK+ L K P+ +E +L K ++ PD
Sbjct: 24 LQAFPDMHNSNISKILGSRWKAMTNL--EKQPYYEEQARLSKQHLEKYPD 71
>pdb|2R79|A Chain A, Crystal Structure Of A Periplasmic Heme Binding Protein
From Pseudomonas Aeruginosa
Length = 283
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 514 PDMGASILLIHKAGTHGIVSPRAEFVTLDERFKMLRQVDW-EALKKDQPA 562
PD+ A + K G V RAE LD R ++ RQ DW A +K QPA
Sbjct: 92 PDLEALESNLKKLGDWLGVPQRAEAAELDYRQRLRRQADWIAAAQKSQPA 141
>pdb|3QWT|A Chain A, The Crystal Structure Of A Possible Member Of Gh105 Family
From Salmonella Enterica Subsp. Enterica Serovar
Paratyphi A Str. Atcc 9150
pdb|3QWT|B Chain B, The Crystal Structure Of A Possible Member Of Gh105 Family
From Salmonella Enterica Subsp. Enterica Serovar
Paratyphi A Str. Atcc 9150
pdb|3QWT|C Chain C, The Crystal Structure Of A Possible Member Of Gh105 Family
From Salmonella Enterica Subsp. Enterica Serovar
Paratyphi A Str. Atcc 9150
pdb|3QWT|D Chain D, The Crystal Structure Of A Possible Member Of Gh105 Family
From Salmonella Enterica Subsp. Enterica Serovar
Paratyphi A Str. Atcc 9150
Length = 381
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 79 NYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYR--- 135
N + + + G+F+LR++D V+ W G +W G G+ G Y Y+
Sbjct: 36 NLVNIKDETGEFLLRLDDG-----------RVIDTKGWAGWEWTHGVGLYGXYHYYQQTG 84
Query: 136 -QSERNSLYKQYADKLLE 152
Q+ R + +AD+ E
Sbjct: 85 DQTXRKIIDDWFADRFAE 102
>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen
Length = 529
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 436 PLRDTLTSSEGKSIVEDNLSEVAAHLLAAYDGGELLAALEEGHAGWQKWVKGFGKTLK-R 494
P D + + G + D VA H L +DG ++ AL + + + F +T + R
Sbjct: 72 PFIDGVYARNGANPCFD---PVAGHHL--FDGDGMVHALRIRNGAAESYACRFTETARLR 126
Query: 495 KGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVSPRA 536
+ +++ P+ G+LHG A + L + G+V P A
Sbjct: 127 QERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSA 168
>pdb|3Q66|C Chain C, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P6122)
pdb|3Q68|C Chain C, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P212121)
Length = 442
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 207 RFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRA 266
+ R+P ++ +RG + + L +GD + N VYN + DD H +
Sbjct: 247 KLRIPGEDPARVRSYLRG-MKYPLWQVGDIFTSKENSLAVYNIPLFPDDPXARFIHQLAE 305
Query: 267 EEHL 270
E+ L
Sbjct: 306 EDRL 309
>pdb|3Q33|A Chain A, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
pdb|3Q35|A Chain A, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
Length = 438
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 207 RFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRA 266
+ R+P ++ +RG + + L +GD + N VYN + DD H +
Sbjct: 243 KLRIPGEDPARVRSYLRG-MKYPLWQVGDIFTSKENSLAVYNIPLFPDDPXARFIHQLAE 301
Query: 267 EEHL 270
E+ L
Sbjct: 302 EDRL 305
>pdb|3QM0|A Chain A, Crystal Structure Of Rtt109-Ac-Coa Complex
Length = 388
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 207 RFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRA 266
+ R+P ++ +RG + + L +GD + N VYN + DD H +
Sbjct: 193 KLRIPGEDPARVRSYLRG-MKYPLWQVGDIFTSKENSLAVYNIPLFPDDPXARFIHQLAE 251
Query: 267 EEHL 270
E+ L
Sbjct: 252 EDRL 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,494,533
Number of Sequences: 62578
Number of extensions: 761758
Number of successful extensions: 1958
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1886
Number of HSP's gapped (non-prelim): 64
length of query: 571
length of database: 14,973,337
effective HSP length: 104
effective length of query: 467
effective length of database: 8,465,225
effective search space: 3953260075
effective search space used: 3953260075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)