Query 008289
Match_columns 571
No_of_seqs 281 out of 2141
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 21:55:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02627 glutamyl-tRNA synthet 100.0 5E-144 1E-148 1171.7 53.9 533 3-545 3-535 (535)
2 KOG1149 Glutamyl-tRNA syntheta 100.0 1E-139 3E-144 1083.2 41.2 516 3-560 1-524 (524)
3 PRK01406 gltX glutamyl-tRNA sy 100.0 2E-127 5E-132 1044.6 53.4 473 54-536 3-476 (476)
4 PRK12558 glutamyl-tRNA synthet 100.0 1E-125 3E-130 1016.4 46.6 445 54-533 1-445 (445)
5 PRK14895 gltX glutamyl-tRNA sy 100.0 5E-124 1E-128 1014.4 49.8 460 54-533 3-511 (513)
6 PRK12410 glutamylglutaminyl-tR 100.0 1E-121 3E-126 981.0 45.5 423 57-524 1-424 (433)
7 TIGR00464 gltX_bact glutamyl-t 100.0 1E-120 2E-125 991.9 52.5 464 55-534 1-465 (470)
8 COG0008 GlnS Glutamyl- and glu 100.0 2E-112 5E-117 918.8 40.4 456 56-536 10-470 (472)
9 PF00749 tRNA-synt_1c: tRNA sy 100.0 3E-97 7E-102 771.6 23.4 310 55-372 1-314 (314)
10 PRK05710 glutamyl-Q tRNA(Asp) 100.0 1.3E-93 2.8E-98 734.9 30.3 293 53-367 3-298 (299)
11 TIGR03838 queuosine_YadB gluta 100.0 2.5E-91 5.3E-96 710.5 26.7 271 56-350 1-272 (272)
12 TIGR00440 glnS glutaminyl-tRNA 100.0 1.1E-80 2.3E-85 676.8 25.9 308 56-381 1-339 (522)
13 cd00418 GlxRS_core catalytic c 100.0 8.9E-80 1.9E-84 611.2 25.0 230 55-380 1-230 (230)
14 PLN03233 putative glutamate-tR 100.0 2.1E-78 4.6E-83 658.0 29.8 260 47-338 3-297 (523)
15 PTZ00402 glutamyl-tRNA synthet 100.0 5.5E-78 1.2E-82 660.7 30.0 281 46-382 43-360 (601)
16 cd00808 GluRS_core catalytic c 100.0 5.4E-77 1.2E-81 595.3 26.8 239 55-380 1-239 (239)
17 PLN02859 glutamine-tRNA ligase 100.0 2.1E-77 4.5E-82 669.6 26.6 298 51-374 260-588 (788)
18 PRK05347 glutaminyl-tRNA synth 100.0 8.6E-77 1.9E-81 647.3 30.6 273 38-338 12-321 (554)
19 PRK04156 gltX glutamyl-tRNA sy 100.0 5.8E-75 1.2E-79 637.9 30.2 281 46-381 92-409 (567)
20 PLN02907 glutamate-tRNA ligase 100.0 1.4E-74 3.1E-79 654.0 29.7 282 46-382 204-520 (722)
21 TIGR00463 gltX_arch glutamyl-t 100.0 4.2E-74 9E-79 630.3 29.1 262 46-338 84-380 (560)
22 PRK14703 glutaminyl-tRNA synth 100.0 8.3E-73 1.8E-77 638.5 29.6 293 46-371 22-358 (771)
23 PTZ00437 glutaminyl-tRNA synth 100.0 1.5E-70 3.2E-75 597.7 27.3 296 51-371 47-371 (574)
24 cd00807 GlnRS_core catalytic c 100.0 1.9E-70 4.2E-75 545.0 23.4 220 55-382 1-236 (238)
25 cd09287 GluRS_non_core catalyt 100.0 5.8E-67 1.2E-71 521.7 22.4 220 55-382 1-238 (240)
26 KOG1147 Glutamyl-tRNA syntheta 100.0 2.4E-45 5.3E-50 388.1 19.2 284 46-382 191-507 (712)
27 KOG1148 Glutaminyl-tRNA synthe 100.0 1E-45 2.2E-50 394.2 12.9 307 51-385 244-577 (764)
28 PRK00750 lysK lysyl-tRNA synth 99.9 1.2E-25 2.5E-30 248.4 32.0 426 55-536 24-509 (510)
29 cd00671 ArgRS_core catalytic c 99.9 1E-23 2.2E-28 208.5 13.5 180 61-309 8-212 (212)
30 TIGR00467 lysS_arch lysyl-tRNA 99.9 3.3E-20 7.2E-25 204.5 33.7 417 55-535 19-514 (515)
31 PRK01611 argS arginyl-tRNA syn 99.8 1.1E-20 2.4E-25 209.3 16.4 242 53-375 110-387 (507)
32 PRK00260 cysS cysteinyl-tRNA s 99.8 5.9E-20 1.3E-24 201.4 21.8 227 54-332 22-295 (463)
33 TIGR00435 cysS cysteinyl-tRNA 99.8 9.9E-20 2.1E-24 199.5 18.6 225 60-335 27-297 (465)
34 PRK14534 cysS cysteinyl-tRNA s 99.8 2.1E-18 4.5E-23 188.2 17.8 240 57-350 22-324 (481)
35 PRK14536 cysS cysteinyl-tRNA s 99.8 2.6E-18 5.7E-23 188.2 18.1 235 62-352 31-326 (490)
36 COG0215 CysS Cysteinyl-tRNA sy 99.8 1.1E-18 2.4E-23 187.3 12.7 232 57-337 23-302 (464)
37 PLN02946 cysteine-tRNA ligase 99.8 2.4E-18 5.3E-23 190.4 13.7 221 61-335 87-355 (557)
38 PRK12418 cysteinyl-tRNA synthe 99.8 7E-18 1.5E-22 180.0 16.0 233 61-335 16-294 (384)
39 PRK14535 cysS cysteinyl-tRNA s 99.7 9E-17 1.9E-21 179.6 18.4 222 60-335 252-540 (699)
40 PF01406 tRNA-synt_1e: tRNA sy 99.7 5.4E-18 1.2E-22 174.1 7.9 240 62-349 16-295 (300)
41 TIGR03447 mycothiol_MshC cyste 99.7 3.8E-17 8.3E-22 175.3 14.0 226 61-335 43-321 (411)
42 cd00802 class_I_aaRS_core cata 99.6 3.9E-16 8.6E-21 144.8 7.8 133 58-308 2-143 (143)
43 PTZ00399 cysteinyl-tRNA-synthe 99.6 2.3E-14 4.9E-19 162.7 16.9 246 57-350 61-359 (651)
44 PRK11893 methionyl-tRNA synthe 99.5 2.1E-13 4.6E-18 151.1 16.3 259 59-353 7-347 (511)
45 COG0018 ArgS Arginyl-tRNA synt 99.5 1.5E-13 3.2E-18 153.6 14.1 139 232-375 303-453 (577)
46 TIGR00456 argS arginyl-tRNA sy 99.5 1.2E-13 2.7E-18 155.2 11.5 136 234-375 298-443 (566)
47 PLN02286 arginine-tRNA ligase 99.5 1.9E-13 4.1E-18 153.8 11.9 136 234-374 297-454 (576)
48 PRK12451 arginyl-tRNA syntheta 99.5 2.5E-13 5.5E-18 152.5 12.2 135 234-374 294-443 (562)
49 COG1384 LysS Lysyl-tRNA synthe 99.4 1.2E-11 2.7E-16 133.8 23.6 75 456-535 445-520 (521)
50 cd00668 Ile_Leu_Val_MetRS_core 99.4 1.7E-12 3.6E-17 135.7 13.1 233 61-334 8-304 (312)
51 cd00814 MetRS_core catalytic c 99.4 1.8E-11 3.9E-16 128.4 17.5 246 61-335 8-312 (319)
52 KOG2007 Cysteinyl-tRNA synthet 99.4 5.3E-12 1.2E-16 135.2 12.8 230 55-338 54-340 (586)
53 cd00806 TrpRS_core catalytic c 99.3 5.6E-11 1.2E-15 122.8 19.0 193 63-334 7-218 (280)
54 cd00674 LysRS_core_class_I cat 99.3 1.4E-10 3.1E-15 123.0 21.2 240 55-334 20-306 (353)
55 PLN02224 methionine-tRNA ligas 99.3 3.6E-11 7.8E-16 136.0 17.2 262 56-353 72-414 (616)
56 TIGR00398 metG methionyl-tRNA 99.3 2.4E-11 5.2E-16 135.7 14.9 280 57-351 3-373 (530)
57 COG0143 MetG Methionyl-tRNA sy 99.3 7.2E-12 1.6E-16 139.3 9.2 277 56-354 8-382 (558)
58 PRK00133 metG methionyl-tRNA s 99.3 2.5E-11 5.4E-16 139.3 13.9 272 61-351 10-376 (673)
59 PRK12267 methionyl-tRNA synthe 99.2 7.2E-11 1.6E-15 135.0 14.0 260 60-353 11-347 (648)
60 cd00817 ValRS_core catalytic c 99.2 1.4E-10 3.1E-15 124.6 14.5 89 61-158 9-135 (382)
61 PF00750 tRNA-synt_1d: tRNA sy 99.2 1.3E-10 2.9E-15 123.7 11.6 130 233-367 207-354 (354)
62 cd00672 CysRS_core catalytic c 99.2 2.3E-10 5E-15 113.7 11.7 51 283-335 154-206 (213)
63 PRK12268 methionyl-tRNA synthe 99.1 2.7E-10 5.9E-15 128.0 13.0 89 61-158 11-120 (556)
64 cd00818 IleRS_core catalytic c 99.1 5.3E-10 1.2E-14 118.4 14.3 91 61-158 9-136 (338)
65 PLN02610 probable methionyl-tR 99.1 2.4E-10 5.2E-15 132.9 12.5 278 56-355 20-399 (801)
66 cd00812 LeuRS_core catalytic c 99.1 9.4E-10 2E-14 115.3 12.7 92 61-161 8-126 (314)
67 PF09334 tRNA-synt_1g: tRNA sy 99.0 1E-10 2.2E-15 126.1 0.9 274 61-354 7-376 (391)
68 TIGR00422 valS valyl-tRNA synt 98.9 5.1E-08 1.1E-12 115.1 19.6 89 61-158 41-167 (861)
69 PRK13208 valS valyl-tRNA synth 98.8 7.1E-08 1.5E-12 113.1 17.8 95 55-158 39-169 (800)
70 PRK05729 valS valyl-tRNA synth 98.8 4.9E-07 1.1E-11 107.0 21.2 94 56-158 38-170 (874)
71 PF01921 tRNA-synt_1f: tRNA sy 98.7 5.7E-08 1.2E-12 102.8 10.1 236 53-330 22-309 (360)
72 TIGR00233 trpS tryptophanyl-tR 98.4 2E-05 4.3E-10 83.5 18.6 190 63-333 10-218 (328)
73 PRK12556 tryptophanyl-tRNA syn 98.4 2.6E-05 5.6E-10 82.7 19.3 199 63-332 11-226 (332)
74 PRK12285 tryptophanyl-tRNA syn 98.3 3.2E-05 7E-10 83.0 19.6 185 62-332 73-276 (368)
75 PRK08560 tyrosyl-tRNA syntheta 98.3 3.4E-05 7.4E-10 81.7 17.8 219 56-354 31-260 (329)
76 PRK12282 tryptophanyl-tRNA syn 98.2 2.7E-05 5.8E-10 82.6 15.8 194 63-332 10-220 (333)
77 COG0180 TrpS Tryptophanyl-tRNA 98.1 0.00013 2.9E-09 76.3 16.9 197 63-335 13-226 (314)
78 KOG0436 Methionyl-tRNA synthet 98.1 3.6E-05 7.8E-10 82.1 12.6 87 63-158 49-155 (578)
79 cd00805 TyrRS_core catalytic c 98.1 0.00012 2.6E-09 75.5 16.2 195 63-332 8-221 (269)
80 TIGR00392 ileS isoleucyl-tRNA 97.9 6.6E-05 1.4E-09 89.1 12.4 130 56-211 39-212 (861)
81 cd00395 Tyr_Trp_RS_core cataly 97.9 0.00061 1.3E-08 70.5 17.8 194 63-332 7-225 (273)
82 PRK12283 tryptophanyl-tRNA syn 97.9 0.00018 3.9E-09 77.7 14.2 90 63-168 10-106 (398)
83 PRK06039 ileS isoleucyl-tRNA s 97.9 0.00013 2.8E-09 87.7 13.9 168 56-250 44-259 (975)
84 PRK12284 tryptophanyl-tRNA syn 97.8 0.0011 2.3E-08 72.4 18.9 220 62-353 9-252 (431)
85 PRK00390 leuS leucyl-tRNA synt 97.8 5.7E-05 1.2E-09 88.9 9.9 114 56-195 35-171 (805)
86 PLN02943 aminoacyl-tRNA ligase 97.8 0.00012 2.6E-09 87.6 11.3 130 56-211 91-259 (958)
87 PRK05743 ileS isoleucyl-tRNA s 97.8 6.4E-05 1.4E-09 89.6 8.9 94 56-158 52-180 (912)
88 PRK14900 valS valyl-tRNA synth 97.7 7.5E-05 1.6E-09 90.1 9.2 129 56-210 51-220 (1052)
89 PTZ00419 valyl-tRNA synthetase 97.7 0.0001 2.2E-09 88.8 9.4 94 56-158 63-195 (995)
90 PRK00927 tryptophanyl-tRNA syn 97.7 0.00097 2.1E-08 70.9 15.9 192 63-333 9-221 (333)
91 PRK13354 tyrosyl-tRNA syntheta 97.6 0.0015 3.3E-08 71.3 16.6 85 245-332 168-257 (410)
92 PLN02843 isoleucyl-tRNA synthe 97.6 0.00015 3.3E-09 86.9 9.0 94 56-158 35-164 (974)
93 PTZ00126 tyrosyl-tRNA syntheta 97.6 0.0052 1.1E-07 66.5 19.5 84 243-332 194-282 (383)
94 TIGR00396 leuS_bact leucyl-tRN 97.6 0.00015 3.3E-09 85.7 8.2 94 56-158 32-147 (842)
95 PLN02563 aminoacyl-tRNA ligase 97.6 0.00023 5E-09 85.0 9.6 94 56-158 113-229 (963)
96 PTZ00427 isoleucine-tRNA ligas 97.6 0.00019 4.1E-09 87.3 8.8 127 58-210 107-275 (1205)
97 PRK05912 tyrosyl-tRNA syntheta 97.5 0.0023 5E-08 69.8 16.3 85 245-332 170-259 (408)
98 PRK13804 ileS isoleucyl-tRNA s 97.4 0.00042 9.2E-09 83.1 9.6 129 56-210 57-224 (961)
99 PF00579 tRNA-synt_1b: tRNA sy 97.3 0.00032 7E-09 72.9 6.3 193 63-332 13-223 (292)
100 PLN02381 valyl-tRNA synthetase 97.3 0.00082 1.8E-08 81.3 10.3 95 56-159 131-264 (1066)
101 PLN02882 aminoacyl-tRNA ligase 97.3 0.0008 1.7E-08 82.0 9.7 92 58-158 43-173 (1159)
102 COG0525 ValS Valyl-tRNA synthe 97.2 0.0014 3.1E-08 76.5 10.6 126 61-212 41-205 (877)
103 PLN02486 aminoacyl-tRNA ligase 97.2 0.029 6.4E-07 60.8 19.5 72 261-338 221-296 (383)
104 TIGR00395 leuS_arch leucyl-tRN 97.1 0.0011 2.3E-08 79.5 7.6 59 287-349 604-664 (938)
105 PLN02886 aminoacyl-tRNA ligase 97.0 0.014 3.1E-07 63.2 14.7 90 63-168 54-149 (389)
106 COG0495 LeuS Leucyl-tRNA synth 96.9 0.0011 2.3E-08 77.5 5.5 95 55-158 36-152 (814)
107 PF00133 tRNA-synt_1: tRNA syn 96.8 0.0034 7.3E-08 71.9 8.2 127 60-212 30-196 (601)
108 PTZ00348 tyrosyl-tRNA syntheta 96.8 0.08 1.7E-06 61.3 19.1 84 243-332 159-247 (682)
109 PLN02959 aminoacyl-tRNA ligase 95.4 0.06 1.3E-06 65.7 10.0 43 290-334 706-749 (1084)
110 KOG0432 Valyl-tRNA synthetase 95.0 0.046 9.9E-07 63.6 6.8 89 61-158 83-210 (995)
111 KOG0435 Leucyl-tRNA synthetase 94.9 0.037 8.1E-07 62.7 5.4 99 53-158 57-175 (876)
112 TIGR00234 tyrS tyrosyl-tRNA sy 94.8 0.12 2.6E-06 56.0 9.1 65 245-309 163-227 (377)
113 TIGR00395 leuS_arch leucyl-tRN 94.0 0.22 4.7E-06 60.2 9.7 94 56-158 28-167 (938)
114 PRK06039 ileS isoleucyl-tRNA s 93.5 0.26 5.6E-06 59.8 9.3 88 258-349 544-636 (975)
115 TIGR00392 ileS isoleucyl-tRNA 93.4 0.25 5.5E-06 59.0 8.9 87 259-350 564-655 (861)
116 PRK12300 leuS leucyl-tRNA synt 93.3 0.51 1.1E-05 56.8 11.1 102 68-195 1-149 (897)
117 COG0060 IleS Isoleucyl-tRNA sy 92.8 0.28 6E-06 58.6 7.8 127 59-211 55-220 (933)
118 PRK12300 leuS leucyl-tRNA synt 92.6 0.48 1E-05 57.0 9.5 87 258-349 529-621 (897)
119 COG0162 TyrS Tyrosyl-tRNA synt 92.3 0.28 6.1E-06 53.5 6.5 64 247-310 168-231 (401)
120 KOG4426 Arginyl-tRNA synthetas 91.8 5.6 0.00012 43.7 15.3 50 48-98 182-235 (656)
121 PF00133 tRNA-synt_1: tRNA syn 91.7 0.52 1.1E-05 54.2 8.1 76 258-334 513-592 (601)
122 PRK05743 ileS isoleucyl-tRNA s 90.9 0.96 2.1E-05 54.6 9.6 87 258-349 544-635 (912)
123 PLN02943 aminoacyl-tRNA ligase 89.9 0.8 1.7E-05 55.5 7.9 57 289-349 569-626 (958)
124 PLN02882 aminoacyl-tRNA ligase 89.7 1.2 2.5E-05 55.1 9.1 74 260-334 568-645 (1159)
125 COG0525 ValS Valyl-tRNA synthe 88.7 1.3 2.9E-05 52.5 8.1 89 259-350 478-570 (877)
126 PRK13804 ileS isoleucyl-tRNA s 88.2 2.1 4.5E-05 52.1 9.6 84 261-349 585-673 (961)
127 PLN02843 isoleucyl-tRNA synthe 88.0 2 4.3E-05 52.3 9.3 73 262-335 567-652 (974)
128 PRK14900 valS valyl-tRNA synth 87.5 1.4 3.1E-05 53.9 7.8 61 286-349 519-582 (1052)
129 cd02156 nt_trans nucleotidyl t 84.5 2.5 5.5E-05 36.9 5.9 60 58-122 2-67 (105)
130 PTZ00419 valyl-tRNA synthetase 82.2 3 6.5E-05 50.9 7.2 76 259-334 538-653 (995)
131 PLN02959 aminoacyl-tRNA ligase 80.7 3.1 6.7E-05 51.2 6.6 40 54-93 45-87 (1084)
132 TIGR00396 leuS_bact leucyl-tRN 80.3 2.8 6.1E-05 50.2 6.0 77 257-334 518-635 (842)
133 PTZ00427 isoleucine-tRNA ligas 79.0 5.6 0.00012 49.5 8.0 74 260-334 674-751 (1205)
134 PLN02381 valyl-tRNA synthetase 77.9 8.7 0.00019 47.3 9.2 78 258-335 607-724 (1066)
135 COG0495 LeuS Leucyl-tRNA synth 75.9 2.4 5.2E-05 50.3 3.6 76 255-334 522-610 (814)
136 PRK00390 leuS leucyl-tRNA synt 71.2 7.6 0.00017 46.3 6.3 70 258-334 522-601 (805)
137 KOG2713 Mitochondrial tryptoph 66.6 11 0.00024 39.5 5.4 72 61-139 19-99 (347)
138 COG0060 IleS Isoleucyl-tRNA sy 61.4 9.7 0.00021 45.9 4.6 46 286-332 583-631 (933)
139 PLN02563 aminoacyl-tRNA ligase 60.4 8.7 0.00019 46.7 4.0 31 303-334 723-754 (963)
140 KOG0433 Isoleucyl-tRNA synthet 52.6 65 0.0014 38.0 8.9 89 63-160 65-189 (937)
141 KOG0437 Leucyl-tRNA synthetase 52.4 21 0.00045 41.9 5.0 69 54-124 44-118 (1080)
142 KOG0432 Valyl-tRNA synthetase 50.1 15 0.00032 43.8 3.5 38 273-310 561-600 (995)
143 TIGR00440 glnS glutaminyl-tRNA 37.2 73 0.0016 36.3 6.3 222 138-380 47-311 (522)
144 COG5477 Predicted small integr 32.9 51 0.0011 28.3 3.2 42 79-120 32-75 (97)
145 cd02156 nt_trans nucleotidyl t 31.9 18 0.0004 31.4 0.5 45 262-308 59-105 (105)
146 KOG3349 Predicted glycosyltran 29.1 34 0.00073 32.8 1.7 21 143-163 116-136 (170)
147 cd06350 PBP1_GPCR_family_C_lik 27.0 5.5E+02 0.012 26.3 10.7 106 55-178 135-242 (348)
148 PF12085 DUF3562: Protein of u 25.4 1.7E+02 0.0036 24.2 4.8 55 479-533 4-58 (66)
149 cd06385 PBP1_NPR_A Ligand-bind 23.5 3.9E+02 0.0085 28.5 9.0 106 55-177 118-226 (405)
150 KOG0433 Isoleucyl-tRNA synthet 23.4 1.7E+02 0.0037 34.8 6.2 106 286-396 594-722 (937)
151 KOG0434 Isoleucyl-tRNA synthet 22.6 24 0.00053 41.1 -0.5 20 291-310 589-608 (1070)
152 cd00498 Hsp33 Heat shock prote 22.5 94 0.002 32.3 3.8 34 152-201 225-258 (275)
153 PF06971 Put_DNA-bind_N: Putat 21.6 1E+02 0.0022 23.9 2.8 30 137-169 8-37 (50)
154 PF08671 SinI: Anti-repressor 21.2 1.2E+02 0.0026 21.1 2.8 20 313-332 9-28 (30)
155 COG4720 Predicted membrane pro 21.1 52 0.0011 32.1 1.4 26 62-87 31-56 (177)
156 PRK00114 hslO Hsp33-like chape 20.8 1.1E+02 0.0023 32.2 3.8 33 152-200 231-263 (293)
157 KOG2361 Predicted methyltransf 20.6 24 0.00053 36.2 -1.0 41 213-253 176-220 (264)
158 PF03206 NifW: Nitrogen fixati 20.6 1.9E+02 0.004 26.0 4.7 50 112-171 16-65 (105)
159 PRK00050 16S rRNA m(4)C1402 me 20.5 99 0.0021 32.6 3.5 48 497-550 198-251 (296)
160 TIGR00006 S-adenosyl-methyltra 20.1 95 0.0021 32.9 3.3 48 496-550 201-255 (305)
No 1
>PLN02627 glutamyl-tRNA synthetase
Probab=100.00 E-value=5.4e-144 Score=1171.69 Aligned_cols=533 Identities=78% Similarity=1.264 Sum_probs=486.0
Q ss_pred ccccCCCcceeeeccccccCCCceecccccccccccccceecccCCCCCCCCceEEEeCCCCCCcCchhhHHHHHHHHHH
Q 008289 3 SIVAATPWSRIRTITKLELAPPIFLQSSVYYCKRRRFSVAASLSTNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLF 82 (571)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~ 82 (571)
++++||| +|++|+ ++|+.++-+.+ ++++|++.....+.. ..++|||||||||||+|||||||||||||+|
T Consensus 3 ~~~~~~~---~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~vr~RFAPSPTG~LHiG~aRtAL~n~l~ 72 (535)
T PLN02627 3 SLVGGTP---IRLLPE--LAPPFLRRSRS---SRRRFSVRAAAAGES--KGGPVRVRFAPSPTGNLHVGGARTALFNYLF 72 (535)
T ss_pred hhhcCCc---ceeecc--ccccccccccc---cccceeeeecccccC--CCCceEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 5678888 899999 88888887766 378888888865421 2667999999999999999999999999999
Q ss_pred HHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCcccccCC
Q 008289 83 ARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCS 162 (571)
Q Consensus 83 Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs 162 (571)
||++||+|||||||||++|++++++++|+++|+||||+|||||++||+||||+||+|+++|+++|++|+++|+||+||||
T Consensus 73 Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDegp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs 152 (535)
T PLN02627 73 ARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCT 152 (535)
T ss_pred HHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCeeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEecC
Q 008289 163 NEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSN 242 (571)
Q Consensus 163 ~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rsd 242 (571)
++|++++|+.+...+.++.|+|+||+++.+++.+++.+|.+++||||+|.++.++|+|+|+|++.+++..++||||+|+|
T Consensus 153 ~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~D 232 (535)
T PLN02627 153 DEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSN 232 (535)
T ss_pred hHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEeeeeeeeeeccccCCCeEEEecC
Confidence 99999999988888889999999999999999999999999999999998899999999999999999999999999999
Q ss_pred CccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCCcccccCCCCchHHHHHCCCC
Q 008289 243 GQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYL 322 (571)
Q Consensus 243 G~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g~~~v~~~r~~G~~ 322 (571)
|+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|+|++.+|+|||||+|+++|.+||++||+
T Consensus 233 G~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~ly~aLg~~~P~f~Hlpli~~~~g~KLSKR~~~~~v~~~r~~G~~ 312 (535)
T PLN02627 233 GQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSLILAPDRSKLSKRHGATSVGQFREMGYL 312 (535)
T ss_pred CCccccccceecccccCCcEEEechhhhcChHHHHHHHHHcCCCCCeEEEccceeCCCCCccccccCCccHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHhhHHHHhcCChhHHHHHHHHHHHHcCCCCC
Q 008289 323 PQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTE 402 (571)
Q Consensus 323 Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wlN~~~ir~l~~~~l~~~~~~~~~~~~~~~~ 402 (571)
|+||+|||++|||++++++|+||++||+++|++++++++|++||.+||.|||++||++++.+++.+++.+++.+.|+...
T Consensus 313 PeAi~nyla~LGws~~~~~e~~~~~eli~~F~l~~v~~s~~~fD~~KL~wlN~~yir~l~~~el~~~~~p~l~~~~~~~~ 392 (535)
T PLN02627 313 PDAMVNYLALLGWNDGTENEIFTLEELVEKFSIDRINKSGAVFDSTKLKWMNGQHLRLLPEEELVKLVGERWKSAGILKE 392 (535)
T ss_pred HHHHHHHHHHhCCCCCCCCCcCCHHHHHHhCCHhhCCCcccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999887789999999999999999999999999999999999999999999999999999998877533
Q ss_pred CCchhHHHHHHHHhccccchhhHHHHHHhhhcCCcccCCCchhchhhccccHHHHHHHHHHHHcCCchhhhhhhchHhHH
Q 008289 403 SKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDNLSEVAAHLLAAYDGGELLAALEEGHAGWQ 482 (571)
Q Consensus 403 ~~~~~l~~~~~l~k~r~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evl~~lL~~L~~~~~~~~~~~~~e~i~ 482 (571)
.+.+|+.+++.++++|++++.|+.+++.+||.++....++.++.++.+.+...+++..+...+++..+.....|+.++++
T Consensus 393 ~~~~~l~~~~~l~~~ri~~L~d~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~l~~~~~~~~~~~~ 472 (535)
T PLN02627 393 SDGSFVKEAVELLKDGIELVTDADKELLNLLSYPLAATLSSPEAKTVVEDNFSEVADALIAAYDSGELAAALEEGHDGWQ 472 (535)
T ss_pred ccHHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCCccccChHHHHHhhhHHHHHHHHHHHHHHhcccccccccCCHHHHH
Confidence 34578999999999999999999999998886442223333333444333444566666655654332111235689999
Q ss_pred HHHHHHHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHhHHhHHhhhhhhcccCChHHHH
Q 008289 483 KWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVSPRAEFVTLDERF 545 (571)
Q Consensus 483 ~~ik~i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLGke~~l~Rl~~~~~fv~~~~~~ 545 (571)
.+++++++++|+|+|++|||||+||||+.+||+|+++|++||||++++||.+..+||+|++||
T Consensus 473 ~~~~~~~e~~g~k~k~l~~PlR~AlTG~~~gP~l~~~~~lLGke~~~~Rl~~~~~~~~~~~~~ 535 (535)
T PLN02627 473 KWVKAFGKALKRKGKRLFMPLRVALTGKMHGPDVGESLVLLHKAGTPDSVTEQAGFVPLEDRF 535 (535)
T ss_pred HHHHHHHHHhCCCHHHhHHHHHHHHcCCCCCCCHHHHHHHhCHHHHHHHhhccCCccchHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999996
No 2
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-139 Score=1083.22 Aligned_cols=516 Identities=50% Similarity=0.814 Sum_probs=450.9
Q ss_pred ccccCCCcceeeeccccccCCCceecccccccccccccceecccCCCCCCCCceEEEeCCCCCCcCchhhHHHHHHHHHH
Q 008289 3 SIVAATPWSRIRTITKLELAPPIFLQSSVYYCKRRRFSVAASLSTNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLF 82 (571)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~ 82 (571)
|+..||||.|+++.|.. +.+ .-+. |.|+++. ..|||||||||||+||||++|||||||||
T Consensus 1 mL~~~t~~~~~~s~~i~---~k~-~l~~---~~r~~~~-------------~~VRvRFAPSPTGfLHlGgLRTALfNYLf 60 (524)
T KOG1149|consen 1 MLVYGTPWLRVRSLPIL---RKS-SLFY---CLRRNFA-------------ACVRVRFAPSPTGFLHLGGLRTALFNYLF 60 (524)
T ss_pred Ccccccchhhccchhhh---hhH-hHHH---HhcCCcc-------------ceeEEeecCCCCcceehhhHHHHHHHHHH
Confidence 46789999999999983 111 1112 2345543 23999999999999999999999999999
Q ss_pred HHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCcccccCC
Q 008289 83 ARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCS 162 (571)
Q Consensus 83 Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs 162 (571)
||++||+|||||||||++|.+++++++|.++|+|+||+|||||++||+||||.||+|+++|++||++|+++|+||+||||
T Consensus 61 Ark~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs 140 (524)
T KOG1149|consen 61 ARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCS 140 (524)
T ss_pred HHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeeccceeeccCC-CCCCeEEEec
Q 008289 163 NEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLD-TLGDFVIMRS 241 (571)
Q Consensus 163 ~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~-~~~D~Vl~Rs 241 (571)
+++++.+|+.+.+.+..|+||++|++++.+|+..++++|.||+||||+|+ ....|+|+|+|+|.++.+ ..+||||+||
T Consensus 141 ~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~~lakg~pf~iRFrl~~-~~~~f~DLvyG~v~~~~d~~~gD~VvmKS 219 (524)
T KOG1149|consen 141 EERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQKLAKGTPFTIRFRLPK-ESPPFTDLVYGKVNHNVDSNEGDPVVMKS 219 (524)
T ss_pred HHHHHHHHHhhhccCCCCcccchhcccCHHHHHHHHhcCCCeeEEEecCC-CCCChhhhhhhhhhccccccCCCcEEEec
Confidence 99999999999988999999999999999999999999999999999997 488999999999999887 4899999999
Q ss_pred CCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCCcccccCCCCchHHHHHCCC
Q 008289 242 NGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGY 321 (571)
Q Consensus 242 dG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g~~~v~~~r~~G~ 321 (571)
||+||||||||||||+|+|||||||+||++||++|++||+||||++|.|+|+|||++++|+|||||+|+++|.+|+++||
T Consensus 220 DgfPTYHfAnVVDDh~M~IsHViRGeEWlpST~KH~lLYkAfgW~pPkFaHlpLl~n~d~sKLSKRqgD~~vs~~~e~G~ 299 (524)
T KOG1149|consen 220 DGFPTYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKAFGWQPPKFAHLPLLLNPDGSKLSKRQGDASVSHYREQGY 299 (524)
T ss_pred CCCcceeeeeeecchhcchhheeecchhccccHHHHHHHHHhCCCCCceeeeeeeecCCcchhhhhcCcchHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHhhHHHHhcCChh-----HHHHHHHHHHHH
Q 008289 322 LPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSN-----ELTKLIGERWKS 396 (571)
Q Consensus 322 ~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wlN~~~ir~l~~~-----~l~~~~~~~~~~ 396 (571)
+||||+||++++||+..++++.+|++||++.|+|++++++++++|.+||.|||++||++...+ ++++.+.+.+++
T Consensus 300 LPeallN~ial~Gwg~~~~~~f~sl~eLieqF~i~~ltk~~a~ld~ekL~~~Nr~~lqr~~~n~s~l~~lv~~~q~~l~e 379 (524)
T KOG1149|consen 300 LPEALLNYIALLGWGFRTENEFFSLEELIEQFSIERLTKSNAILDSEKLRFLNRLHLQRLISNESKLRELVDKLQPLLKE 379 (524)
T ss_pred ChHHHHHHHHHcCCCcccccccccHHHHHHHhchhhhcccccccCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876543 456666666655
Q ss_pred c-CC-CCCCCchhHHHHHHHHhccccchhhHHHHHHhhhcCCcccCCCchhchhhccccHHHHHHHHHHHHcCCchhhhh
Q 008289 397 T-GI-LTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDNLSEVAAHLLAAYDGGELLAAL 474 (571)
Q Consensus 397 ~-~~-~~~~~~~~l~~~~~l~k~r~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evl~~lL~~L~~~~~~~~~ 474 (571)
+ |- ....+..++++++.+.++++.++.|+...+.+||..|. ..+.+.+..++.+..+++.+.+..-....
T Consensus 380 ~y~~s~~~~~~~~~k~iL~l~~~~~~~l~dl~s~~~~~f~~P~--------d~qa~~d~~se~~~~~ia~l~~~l~~~~~ 451 (524)
T KOG1149|consen 380 AYGTSSDNEAKEVLKDILLLVTGSLKRLQDLLSELSFFFTRPS--------DKQAVEDLLSENVASLIAHLLKILNPSAL 451 (524)
T ss_pred hcCCchhhhhHHHHHHHHHHhccchhHHHHhhhhhheeeeccc--------hhhHHHHHhhHhHHHHHHHHHhhhhhhhh
Confidence 3 21 11124567888999999999999999986666665441 12222223334443333333332111223
Q ss_pred hhchHhHHHHHHHHHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHhHHhHHhhhhhhcccCChHHHHHHHHHhcHH
Q 008289 475 EEGHAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVSPRAEFVTLDERFKMLRQVDWE 554 (571)
Q Consensus 475 ~~~~e~i~~~ik~i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLGke~~l~Rl~~~~~fv~~~~~~~~~~~~~~~ 554 (571)
..+.++|+.+++.++++.+.|.+.+|++||+||+|+.+||+++++|++||++++. ||++.+.+.+|+
T Consensus 452 ~~~~~e~n~~lk~~a~~~~~k~k~~~~~lR~aL~G~~~Gp~iaemi~~lGk~e~~-------------eRl~~~l~~~~~ 518 (524)
T KOG1149|consen 452 ELEQDEWNSSLKAFAKEHQRKLKKLMKLLRVALSGKLPGPPIAEMIELLGKKEVE-------------ERLKELLESLWL 518 (524)
T ss_pred hhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhHHHH-------------HHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999665 556778888899
Q ss_pred hhccCC
Q 008289 555 ALKKDQ 560 (571)
Q Consensus 555 ~~~~~~ 560 (571)
+++|++
T Consensus 519 ~l~k~~ 524 (524)
T KOG1149|consen 519 ELNKDE 524 (524)
T ss_pred hhhcCC
Confidence 999985
No 3
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.5e-127 Score=1044.57 Aligned_cols=473 Identities=48% Similarity=0.830 Sum_probs=437.8
Q ss_pred CceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccc
Q 008289 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133 (571)
Q Consensus 54 ~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gp 133 (571)
++|||||||||||+|||||+|||||||+|||++||+|||||||||++|++++++++|+++|+||||+|||||++| +|||
T Consensus 3 ~~v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~-~~gp 81 (476)
T PRK01406 3 MKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGG-PYGP 81 (476)
T ss_pred CceeEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccC-CCCc
Confidence 569999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred eeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCC
Q 008289 134 YRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKG 213 (571)
Q Consensus 134 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~ 213 (571)
|+||+|+++|+++|++|+++|+||+||||+|||++.|+.+.+.|.+|.|+|+||+++.+|+.+++.+|.+++||||+|.+
T Consensus 82 y~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~ 161 (476)
T PRK01406 82 YRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDE 161 (476)
T ss_pred eehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCC
Confidence 99999999999999999999999999999999999999988888899999999999999999999999999999999988
Q ss_pred CceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEe
Q 008289 214 GSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHV 293 (571)
Q Consensus 214 ~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~ 293 (571)
+.+.|+|+|+|++.+++..++|+||+|+||+||||||+|||||+|+|||||||+||++|||+|+++|++|||+.|.|+|+
T Consensus 162 ~~~~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~ 241 (476)
T PRK01406 162 GEVVFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGWEVPVFAHL 241 (476)
T ss_pred CceEEEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhCCCCCeEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHh
Q 008289 294 SLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWM 373 (571)
Q Consensus 294 pli~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wl 373 (571)
|+|++.+|+|||||+|.++|.+|+++||+|+|+.||+++|||+++ ..|++++++++++|+++++++++++||++||.||
T Consensus 242 pli~~~~g~klSKR~g~~~l~~l~~~G~~p~Ai~n~l~~lG~s~~-~~e~~~~~~~i~~f~l~~~~~s~~~fd~~kL~~~ 320 (476)
T PRK01406 242 PLILGPDGKKLSKRHGATSVEQYRDMGYLPEALLNYLALLGWSHG-DQEIFSLEELIELFDLERVSKSPARFDIKKLDWL 320 (476)
T ss_pred eeeeCCCCCcccCcCCccCHHHHHHCCCCHHHHHHHHHHhCCCCC-ccccCCHHHHHHhcChhhCCCCCccccHHHHHHH
Confidence 999999999999999999999999999999999999999999965 6799999999999999999999999999999999
Q ss_pred hHHHHhcCChhHHHHHHHH-HHHHcCCCCCCCchhHHHHHHHHhccccchhhHHHHHHhhhcCCcccCCCchhchhhccc
Q 008289 374 NGQHLRAIPSNELTKLIGE-RWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVED 452 (571)
Q Consensus 374 N~~~ir~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~l~k~r~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (571)
|++||++++.+++++++.+ ++...++.. .+.+++.+++.++++|++++.|+.+++.+||..+.. +++++.++.+.+
T Consensus 321 N~~~i~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~d~~~~~~~ff~~~~~--~~~~~~~~~l~~ 397 (476)
T PRK01406 321 NGHYIRELDPEELAELLLPWHLEQEGLDT-EDGPYLEKVVPLLKERAKTLKELAELARFFFEDFPE--YDEDAAKKHLKE 397 (476)
T ss_pred HHHHHHhCCHHHHHHHHhHHHhhhccccc-ccHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcc--cChHHHHHhcch
Confidence 9999999999999999998 665555432 345789999999999999999999999988864422 222333344444
Q ss_pred cHHHHHHHHHHHHcCCchhhhhhhchHhHHHHHHHHHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHhHHhHHhhh
Q 008289 453 NLSEVAAHLLAAYDGGELLAALEEGHAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIV 532 (571)
Q Consensus 453 ~~~evl~~lL~~L~~~~~~~~~~~~~e~i~~~ik~i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLGke~~l~Rl 532 (571)
...+++..+.+.|+..+ +|+.++|+.+++++++++|+|+|++|||||+||||+.+||+|+++|++|||++|++||
T Consensus 398 ~~~~~L~~l~~~L~~l~-----~~~~e~i~~~i~~iak~~gik~k~lf~pLR~ALtG~~~GP~L~~il~lLGke~vl~RL 472 (476)
T PRK01406 398 VAREVLEALLEKLEALE-----EWTAEAIEAAIKAVAEELGLKGGKLFMPLRVALTGRTVGPPLFESMELLGKEEVLARL 472 (476)
T ss_pred HHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHH
Confidence 44566777777775421 3678999999999999999999999999999999999999999999999999999999
Q ss_pred hhhc
Q 008289 533 SPRA 536 (571)
Q Consensus 533 ~~~~ 536 (571)
+.++
T Consensus 473 ~~al 476 (476)
T PRK01406 473 RKAL 476 (476)
T ss_pred HHhC
Confidence 8764
No 4
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-125 Score=1016.39 Aligned_cols=445 Identities=35% Similarity=0.581 Sum_probs=410.6
Q ss_pred CceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccc
Q 008289 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133 (571)
Q Consensus 54 ~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gp 133 (571)
++|||||||||||+|||||||||||||+|||++||+|||||||||++|+++++++.|+++|+||||+||+ +
T Consensus 1 ~~vr~RFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De---------~ 71 (445)
T PRK12558 1 MTVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDR---------T 71 (445)
T ss_pred CceeEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCc---------c
Confidence 3699999999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred eeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCC
Q 008289 134 YRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKG 213 (571)
Q Consensus 134 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~ 213 (571)
|+||+|.+.|++++++|+++|+||+||||++||+++|+.+...|.++.|+|+||+++.+++.++..+|.+++|||+++ +
T Consensus 72 y~QSer~~~y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~-~ 150 (445)
T PRK12558 72 FRQSDRFDRYDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKLD-D 150 (445)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCceEEEecC-C
Confidence 899999999999999999999999999999999999998888888899999999999999998899999999999995 5
Q ss_pred CceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEe
Q 008289 214 GSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHV 293 (571)
Q Consensus 214 ~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~ 293 (571)
+.+.|+|+|+|++.+++..++||||+|+||+||||||||||||+|+|||||||+||++|||+|++||+||||+.|.|+|+
T Consensus 151 ~~~~~~D~i~G~~~~~~~~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg~~~P~f~H~ 230 (445)
T PRK12558 151 EPISWDDLIRGEQSIDAASLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPPVFAHL 230 (445)
T ss_pred CceEEEEEeeeEeecccccCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhCCCCCeEEEc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHh
Q 008289 294 SLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWM 373 (571)
Q Consensus 294 pli~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wl 373 (571)
|+|++++|+|||||+|+++|.+||++||+||||+|||++|||++++ +|+||++||+++|++++++++|++||.+||.||
T Consensus 231 pli~~~~g~KLSKR~g~~sv~~~r~~G~~Peai~n~la~lG~s~~~-~e~~~~~eli~~F~l~~~~~~~~~fd~~KL~w~ 309 (445)
T PRK12558 231 SLLTGADGKGLSKRLGGLSIRSLREDGIEPMAIASLLARLGTSDPV-EPYTSMEELAESFDLSSFSRAPAKFDPEDLERL 309 (445)
T ss_pred ccccCCCcccccccCCCcCHHHHHHCCCCHHHHHHHHHHHcCCCCC-cccCCHHHHHHhCCHhhCCCccccCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999874 599999999999999999999999999999999
Q ss_pred hHHHHhcCChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHhccccchhhHHHHHHhhhcCCcccCCCchhchhhcccc
Q 008289 374 NGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDN 453 (571)
Q Consensus 374 N~~~ir~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~l~k~r~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (571)
|++||++++.+++++++.+++...+. ...++.++++|++++.|+.+++.+||..+.. ... +.
T Consensus 310 N~~~i~~~~~~~l~~~~~~~~~~~~~--------~~~~~~l~~~r~~~l~e~~~~~~~ff~~~~~--~~~--------~~ 371 (445)
T PRK12558 310 NARLLHALPFEAVKDRLAALGIPGEA--------AEAFWLAVRGNLDKLSDAADWWQIVHGPITP--VIL--------EE 371 (445)
T ss_pred HHHHHHhCCHHHHHHHHHHhhccccc--------cHHHHHHHHHhcCcHHHHHHHHHHHcCCCcc--ccc--------hh
Confidence 99999999999999999877543322 2346689999999999999999888753211 111 11
Q ss_pred HHHHHHHHHHHHcCCchhhhhhhchHhHHHHHHHHHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHhHHhHHhhhh
Q 008289 454 LSEVAAHLLAAYDGGELLAALEEGHAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVS 533 (571)
Q Consensus 454 ~~evl~~lL~~L~~~~~~~~~~~~~e~i~~~ik~i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLGke~~l~Rl~ 533 (571)
..+++..+++.+.. .+|+.++++.++++++++.|+|+|++|||||+||||+.+||+|+++|++|||+++++||.
T Consensus 372 ~~~~l~~~~~~l~~------~~~~~~~~~~~~~~~~~~~g~k~~~~~~plR~altG~~~gP~l~~~~~~lGk~~~l~Rl~ 445 (445)
T PRK12558 372 DRAFLKQAAALLPE------GPWDEDTWKAWTAAVKEATGRKGKALFMPLRLALTGREHGPELAKLLPLIGRERAIARLT 445 (445)
T ss_pred HHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHhChHHHHhhcC
Confidence 23455556666543 246789999999999999999999999999999999999999999999999999999984
No 5
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.6e-124 Score=1014.42 Aligned_cols=460 Identities=34% Similarity=0.575 Sum_probs=418.5
Q ss_pred CceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccc
Q 008289 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133 (571)
Q Consensus 54 ~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gp 133 (571)
++|||||||||||+|||||||||||||+|||++||+|||||||||++|++++++++|+++|+||||+|||| |
T Consensus 3 ~~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe~--------p 74 (513)
T PRK14895 3 NNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNGE--------V 74 (513)
T ss_pred CCeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCC--------c
Confidence 47999999999999999999999999999999999999999999999999999999999999999999986 7
Q ss_pred eeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCC
Q 008289 134 YRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKG 213 (571)
Q Consensus 134 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~ 213 (571)
|+||+|+++|+++|++|+++|+||+||||++||+++|+.+...+.++.|+|+||+++.++. .+|.+++||||+|.+
T Consensus 75 y~QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~----~~~~~~~iR~k~p~~ 150 (513)
T PRK14895 75 IFQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIY----PTDIKPVIRLKTPRE 150 (513)
T ss_pred eeEeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhh----hcCCCeeEEEEcCCC
Confidence 9999999999999999999999999999999999999988888888999999999987753 368899999999988
Q ss_pred CceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEe
Q 008289 214 GSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHV 293 (571)
Q Consensus 214 ~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~ 293 (571)
+.+.|+|+|+|++.+++..++|+||+|+||.||||||+|||||+|+|||||||+||++|||+|+++|++|||+.|.|+|+
T Consensus 151 ~~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~ 230 (513)
T PRK14895 151 GSITIHDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVPSMTHI 230 (513)
T ss_pred CceEEEeecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcCCCCCeEEEE
Confidence 89999999999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHh
Q 008289 294 SLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWM 373 (571)
Q Consensus 294 pli~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wl 373 (571)
|+|+|.+|+|||||+|+++|.+||++||+|+||+|||++|||+.+ ++|+||++||++.|++++++++|++||++||.||
T Consensus 231 plv~~~~g~KLSKR~g~~~i~~~r~~G~~Peai~n~la~LG~s~~-~~e~~~~~el~~~F~~~~v~~s~~~FD~~KL~wl 309 (513)
T PRK14895 231 PLIHGADGAKLSKRHGALGIEAYKDMGYLPESLCNYLLRLGWSHG-DDEIISMTQAIDWFNLDSLGKSPSKLDFAKMNSL 309 (513)
T ss_pred EeEEcCCCCccccccCchhHHHHHHCCCCHHHHHHHHHHhCCCCC-CcCCCCHHHHHhhCCHHhCcCCcCcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999975 5799999999999999999999999999999999
Q ss_pred hHHHHhcCChhHHHHHHHHHHHHcCC----------------------------------C---------------CCCC
Q 008289 374 NGQHLRAIPSNELTKLIGERWKSTGI----------------------------------L---------------TESK 404 (571)
Q Consensus 374 N~~~ir~l~~~~l~~~~~~~~~~~~~----------------------------------~---------------~~~~ 404 (571)
|++||+.++.+++.+.+.+++.+.+. . ....
T Consensus 310 N~~yi~~l~~~el~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (513)
T PRK14895 310 NAHYLRMLDNDSLTSKTVEILEQNYNKLLRKLAYREEFGGNTERSTAAYIDIREDASTGLTYKLPLAVELPKKFKVSEQE 389 (513)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999875321 0 0011
Q ss_pred chhHHHHHHHHhccccchhhHHHHHHhhhcCCcccCCCchhchhhccccHHHHHHHHHHHHcCCchhhhhhhchHhHHHH
Q 008289 405 GPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDNLSEVAAHLLAAYDGGELLAALEEGHAGWQKW 484 (571)
Q Consensus 405 ~~~l~~~~~l~k~r~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evl~~lL~~L~~~~~~~~~~~~~e~i~~~ 484 (571)
.+|+.+++.++++|++++.|+.+++.+||..+. ... +++.++...+...+++..+.+.|.+.+ +|+.+.++++
T Consensus 390 ~~~l~~~~~l~~~r~~~l~d~~~~~~~~f~~~~-~~~-~~~~~~~~~~~~~~~l~~~~~~L~~~~-----~~~~e~~~~~ 462 (513)
T PRK14895 390 IGYIKQAMPSLLVRSETLLELTRLAQIYLVDSP-IIY-SQDSKEIIENCDKNLIKQIIENLSELE-----QFDKESVQNK 462 (513)
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHhCCCC-ccc-hHHHHHhhhhhHHHHHHHHHHHHhccC-----CCCHHHHHHH
Confidence 367899999999999999999999988875321 112 222333443444455666666665421 4678999999
Q ss_pred HHHHHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHhHHhHHhhhh
Q 008289 485 VKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVS 533 (571)
Q Consensus 485 ik~i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLGke~~l~Rl~ 533 (571)
++++++++|+|+|++|||||+||||+.+||+|+++|++|||++|++||+
T Consensus 463 ~~~~~~~~g~k~~~l~~plR~AltG~~~gP~l~~~~~lLGke~~l~Rl~ 511 (513)
T PRK14895 463 FKEIAAANDLKLNDIMKPVRALITGMTASPSVFEIAEILGKENILKRLK 511 (513)
T ss_pred HHHHHHHhCCCHHHhHHHHHHHHcCCCCCCCHHHHHHHhCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999996
No 6
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-121 Score=980.97 Aligned_cols=423 Identities=38% Similarity=0.629 Sum_probs=387.3
Q ss_pred EEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccceec
Q 008289 57 RVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQ 136 (571)
Q Consensus 57 r~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~Q 136 (571)
+|||||||||+|||||||||||||+|||++||+|||||||||++|++++++++|+++|+||||+||| ||+|
T Consensus 1 ~~RFAPSPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe---------~y~Q 71 (433)
T PRK12410 1 MLRFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDK---------LVYQ 71 (433)
T ss_pred CCccCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCC---------Ceeh
Confidence 4899999999999999999999999999999999999999999999999999999999999999997 6999
Q ss_pred cccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCce
Q 008289 137 SERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSL 216 (571)
Q Consensus 137 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~ 216 (571)
|+|+++|+++|++|+++|+||+||||++|++++|+.+...|.++.|+|+||+++.+|+ +++|.++++|||+|. +.+
T Consensus 72 SeR~~~Y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~---~~~g~~~~iR~k~p~-~~~ 147 (433)
T PRK12410 72 SENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEV---LNCNKPFVVRLKKPN-HTM 147 (433)
T ss_pred hccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHH---HhcCCCeEEEEEcCC-Cce
Confidence 9999999999999999999999999999999999988888889999999999999886 568999999999995 899
Q ss_pred EEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCC-CcEEEeee
Q 008289 217 KISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSM-PYFAHVSL 295 (571)
Q Consensus 217 ~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~-P~f~H~pl 295 (571)
.|+|+|+|++.+++.+++||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++ |.|+|+|+
T Consensus 148 ~f~D~v~G~i~~~~~~~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlpl 227 (433)
T PRK12410 148 SFTDAIKGEVSFEPDEIDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPI 227 (433)
T ss_pred eeeeccceeEEeccccCCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEeee
Confidence 99999999999999899999999999999999999999999999999999999999999999999999986 59999999
Q ss_pred eecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHhhH
Q 008289 296 ILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNG 375 (571)
Q Consensus 296 i~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wlN~ 375 (571)
|+|.+|+|||||+|+++|.+||++||+|+||+|||++|||+.+ +|+||+++++++|+++++++++++||++||.|||+
T Consensus 228 i~~~~g~KLSKR~~~~~v~~~r~~G~~PeAi~n~l~~lG~~~~--~e~~~~~eli~~F~~~~i~~~~~~~d~~kL~~~N~ 305 (433)
T PRK12410 228 ILNEEGKKMSKRDNASSVKWLLEQGFLPSAIANYLILLGNKTP--KEIFTLEEAIEWFDIEKISKSPAKFDLKKLRFINR 305 (433)
T ss_pred eeCCCCCeeecccChhhHHHHHHCCCCHHHHHHHHHHhCCCCc--ccccCHHHHHHhCCHhhCCCccccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999865 69999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHhccccchhhHHHHHHhhhcCCcccCCCchhchhhccccHH
Q 008289 376 QHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDNLS 455 (571)
Q Consensus 376 ~~ir~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~l~k~r~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (571)
+||++++.+++.+++.. . .+++.+++.++++|++++.|+.+++.+||..+ .++ +.. .
T Consensus 306 ~~i~~~~~~~l~~~~~~-------~----~~~~~~~~~l~~~r~~~l~d~~~~~~~~f~~~---~~~-~~~--------~ 362 (433)
T PRK12410 306 EHLKMLDDERLSKLLGF-------K----DKDLGGLAKLYLQEASTLNELKEKIDLIFSPK---DIN-EEF--------K 362 (433)
T ss_pred HHHHhCCHHHHHHHHhh-------h----hHHHHHHHHHHHHhcCcHHHHHHHHHHHcCCC---ccc-hhh--------H
Confidence 99999999999988731 1 24689999999999999999999998887532 111 111 1
Q ss_pred HHHHHHHHHHcCCchhhhhhhchHhHHHHHHHHHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHh
Q 008289 456 EVAAHLLAAYDGGELLAALEEGHAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIH 524 (571)
Q Consensus 456 evl~~lL~~L~~~~~~~~~~~~~e~i~~~ik~i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLG 524 (571)
+.+..+.+.+...+ + .++++++++++++++|+|+|++|||||+||||+.+||+|+++|++|-
T Consensus 363 ~~~~~l~~~l~~~~------~-~~~~~~~~~~~~~~~g~k~~~~~~plR~AltG~~~gP~l~~~l~ll~ 424 (433)
T PRK12410 363 EECKILKEALKSMD------F-FEDFEEFKKELMQKSGLKGKKFFKPLRILLTGNEHGPELSDIYPYIK 424 (433)
T ss_pred HHHHHHHHHHHcCC------c-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 22223333343322 1 27899999999999999999999999999999999999999999984
No 7
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=100.00 E-value=1e-120 Score=991.85 Aligned_cols=464 Identities=45% Similarity=0.787 Sum_probs=430.3
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccce
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy 134 (571)
+|||||||||||+||||||||||+||+|||++||+|||||||||++|++++++++|+++|+||||+|||| ||
T Consensus 1 ~v~~RfAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de~--------~~ 72 (470)
T TIGR00464 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDEG--------PY 72 (470)
T ss_pred CceEeeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCCC--------ee
Confidence 4899999999999999999999999999999999999999999999999999999999999999999986 79
Q ss_pred eccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCC
Q 008289 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGG 214 (571)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~ 214 (571)
+||+|+++|+++|++|+++|+||+||||+++++++|+.+...+.+|.|+|+||+++.+|+.++..+|.++++|||+|..+
T Consensus 73 ~QS~r~~~y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~ 152 (470)
T TIGR00464 73 YQSQRLDIYKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEA 152 (470)
T ss_pred ehhCCHHHHHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCC
Confidence 99999999999999999999999999999999999998888888899999999999999988889999999999999878
Q ss_pred ceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEee
Q 008289 215 SLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVS 294 (571)
Q Consensus 215 ~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~p 294 (571)
.+.|+|+|+|++.+++..++|+||+|+||+||||||+|||||+|||||||||+||+++||+|+++|++|||+.|.|.|+|
T Consensus 153 ~~~~~D~~~G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p 232 (470)
T TIGR00464 153 VVSFNDQVRGEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIPVFAHLP 232 (470)
T ss_pred ceeEEecccceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcCCCCCeEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHhh
Q 008289 295 LILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMN 374 (571)
Q Consensus 295 li~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wlN 374 (571)
++++.+|+|||||+|.++|++|+++||.|+|+.||++.+||+++...++++.++++++|+++++++++++||++||.|||
T Consensus 233 ~l~~~~g~kLSKR~g~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~~e~~~~~~~i~~f~l~~~~~~~~~fd~~kL~~~N 312 (470)
T TIGR00464 233 MILDEDGKKLSKRDGATSIMQFKEQGYLPEALINYLALLGWSPPDDQEFFSLEELIEIFSLNRVSKSPAKFDWKKLQWLN 312 (470)
T ss_pred eeecCCCccccccCCCccHHHHHHCCCCHHHHHHHHHHcCCCCCCccccCCHHHHHHhcCcccCCCCCCeecHHHHHHHH
Confidence 99999999999999999999999999999999999999999988788999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHc-CCCCCCCchhHHHHHHHHhccccchhhHHHHHHhhhcCCcccCCCchhchhhcccc
Q 008289 375 GQHLRAIPSNELTKLIGERWKST-GILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDN 453 (571)
Q Consensus 375 ~~~ir~l~~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~l~k~r~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (571)
++||++++.+++.+++.+++.+. ++. ..+.+++.+++.++++|++++.|+.+++.+||..+. .++..+.++...+.
T Consensus 313 ~~~l~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~l~d~~~~~~~~f~~~~--~~~~~~~~~~~~e~ 389 (470)
T TIGR00464 313 AHYIKELPDEELFELLDPHLKSLVNTD-TLNREQLAELLLLFKERLKTLKEIAELIRLFFEDKK--EVDEDAFKKHLKKN 389 (470)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhcccc-cccHHHHHHHHHHHHHhhccHHHHHHHHHHHhCCCC--ccCHHHHHHhcchh
Confidence 99999999999999999998776 432 233478999999999999999999999988886432 23333333444445
Q ss_pred HHHHHHHHHHHHcCCchhhhhhhchHhHHHHHHHHHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHhHHhHHhhhh
Q 008289 454 LSEVAAHLLAAYDGGELLAALEEGHAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVS 533 (571)
Q Consensus 454 ~~evl~~lL~~L~~~~~~~~~~~~~e~i~~~ik~i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLGke~~l~Rl~ 533 (571)
..+++..+++.|...+ +++.++|+++++++++++|+|+|++|||||+||||+.+||+|+++|++|||+++++||+
T Consensus 390 ~~~~L~~l~~~L~~~~-----~~~~e~i~~~l~~iak~~g~k~k~lf~pLR~ALtG~~~GP~L~~~i~lLGke~~l~RL~ 464 (470)
T TIGR00464 390 VKEVLEALKKKLQALE-----EWTADEVKSAIKQIAEELGLKGKKVFMPLRLALTGKGHGPDLAQILELIGKTESIKRLK 464 (470)
T ss_pred HHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHH
Confidence 5667777777776421 35689999999999999999999999999999999999999999999999999999998
Q ss_pred h
Q 008289 534 P 534 (571)
Q Consensus 534 ~ 534 (571)
+
T Consensus 465 ~ 465 (470)
T TIGR00464 465 A 465 (470)
T ss_pred H
Confidence 5
No 8
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-112 Score=918.82 Aligned_cols=456 Identities=40% Similarity=0.654 Sum_probs=409.6
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCcccee
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYR 135 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~ 135 (571)
|||||||||||+|||||||||||||+|||++||+|||||||||++|++++|+++|+++|+||||+|||+ ||+
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde~--------~~~ 81 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDEG--------PYY 81 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCCc--------eee
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 799
Q ss_pred ccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCC-CCCCcCCCCCHHHHHHHHhcCCCceEEEecC--C
Q 008289 136 QSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPP-VYTGKWATATDAEVQKELERGTPYTYRFRVP--K 212 (571)
Q Consensus 136 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~-~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~--~ 212 (571)
||+|+++|+++|++|+++|+||+||||+|||+++|+.+...+.+| .|+|.|++++.++.......|.+++||||+| .
T Consensus 82 QS~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~ 161 (472)
T COG0008 82 QSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAH 161 (472)
T ss_pred hhhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCC
Confidence 999999999999999999999999999999999999999888777 9999999999988776655689999999999 4
Q ss_pred CCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEE
Q 008289 213 GGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAH 292 (571)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H 292 (571)
.+. .|.|+|+|+|.+.++..+| |+.|+||+||||||||||||+|||||||||+||++|||+|++||++|||++|.|+|
T Consensus 162 ~~~-~~~D~v~g~i~~~~~~~~d-v~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H 239 (472)
T COG0008 162 PGP-VFRDLVRGRIVFAPKHPDF-VILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAH 239 (472)
T ss_pred CCC-ccccceeeeEecCccCCcc-eeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEE
Confidence 445 8999999999999877789 99999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCC-CCcccCCHHHHHHhcCccccccCCCcccHHHHH
Q 008289 293 VSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDG-TENEFFTLKQLVEKFTIERVNKSGAIFDSTKLR 371 (571)
Q Consensus 293 ~pli~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~-~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~ 371 (571)
+|+|++.+|+|||||++.+++.+|+.+||+|+||.||++++||+.. ...++|++++++++|+++.++++++.||.+||.
T Consensus 240 ~~li~~~~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~ 319 (472)
T COG0008 240 LPLLLNEDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLD 319 (472)
T ss_pred eeeeecCCCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhH
Confidence 9999999999999999999999999999999999999999999874 678999999999999999999999999999999
Q ss_pred HhhHHHHhcCChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHhccccchhhHHHHHHhhhcCCcccCCCchhchhhcc
Q 008289 372 WMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVE 451 (571)
Q Consensus 372 wlN~~~ir~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~l~k~r~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (571)
|+|++||+..+.+.+.+.+.+++...+.....+.++..+++.++++ ++.++.+...+++... .+...+.+.
T Consensus 320 ~~n~ry~~~~p~e~~~~~l~~~~~~~~~~~~~~~e~~~~~~~l~~~---~~~~i~~~~~~~~~~~------~~~~~~~l~ 390 (472)
T COG0008 320 WLNPRYMRVDPVEVVIENLKPHLEEEGATLPLNPEMGERVVPLTKE---TLIEIERLDFFFFEDK------EEVRLKRLA 390 (472)
T ss_pred hhhHHHHHhCCHHHHHHhhhhhhhhhcccCCCCHHHHhhhhhhccc---hHHHHhHHHHHHhcch------HHHHHHhhc
Confidence 9999999999999999999888776554322256889999999999 8888888766655422 111111222
Q ss_pred c-cHHHHHHHHHHHHcCCchhhhhhhchHhHHHHHHHHHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHhHHhHHh
Q 008289 452 D-NLSEVAAHLLAAYDGGELLAALEEGHAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHG 530 (571)
Q Consensus 452 ~-~~~evl~~lL~~L~~~~~~~~~~~~~e~i~~~ik~i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLGke~~l~ 530 (571)
. ...+++....+.+... .++.+.+..|+++..+..++|+++++||||+|+||..+||+|+++++++|++.+++
T Consensus 391 ~~~~~~~l~~~~~~l~~~------~~~~~~i~~wv~~~~~~~~vk~~~~~~plr~a~tG~~~~p~l~~~~~~~g~~~q~~ 464 (472)
T COG0008 391 NVIVAEVLEKDAEGLITS------DWTKENIIHWVKAVARLFGVKGPKLFPPLRVALTGGYVEPELADTIELLGKEVQFE 464 (472)
T ss_pred chHHHHHHHHHHHhhhhc------cccHHHHHHHHHHHHHHhCCCCcccchhhHHHhcCCccCCCHHHHHHhhchHHHHH
Confidence 1 2334444444444331 35678899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhc
Q 008289 531 IVSPRA 536 (571)
Q Consensus 531 Rl~~~~ 536 (571)
|+..++
T Consensus 465 Rl~~~~ 470 (472)
T COG0008 465 RLGYAL 470 (472)
T ss_pred HHHHHh
Confidence 998754
No 9
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=100.00 E-value=3e-97 Score=771.61 Aligned_cols=310 Identities=51% Similarity=0.903 Sum_probs=284.9
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccce
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy 134 (571)
+|||||||||||+||||||||||+||++||++||+|||||||||++|+.++++++|+++|+||||+||++ ||
T Consensus 1 kv~tRFAPsPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D~~--------~~ 72 (314)
T PF00749_consen 1 KVRTRFAPSPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWDYG--------PY 72 (314)
T ss_dssp --EEEE---SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---STC--------EE
T ss_pred CeeEeeCCCCCCCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecCCe--------EE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999964 89
Q ss_pred eccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCC--CCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCC
Q 008289 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQ--LPPVYTGKWATATDAEVQKELERGTPYTYRFRVPK 212 (571)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~--~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~ 212 (571)
+||+|+++|++++++|+++|+||+||||++|+++.|+.+...+ .++.|+|+|++++++|+.+.+.+|.+++||||+|.
T Consensus 73 ~QS~r~~~Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~ 152 (314)
T PF00749_consen 73 YQSDRLEIYQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPM 152 (314)
T ss_dssp EGGGGHHHHHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSS
T ss_pred eHHHHHHHHHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeeccc
Confidence 9999999999999999999999999999999999998876665 67899999999999999988999999999999998
Q ss_pred CCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEE
Q 008289 213 GGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAH 292 (571)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H 292 (571)
+..+.|.|.++|++.++...++||||.|+||+||||||||||||+|||||||||+||++|||+|++||++|||++|.|+|
T Consensus 153 ~~~~~~~D~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H 232 (314)
T PF00749_consen 153 ESPIAFRDLVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPPPYAH 232 (314)
T ss_dssp TCCEEEEETTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEE
T ss_pred ccccccccCcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCcceEe
Confidence 86799999999999998878999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCcccccCCCCc--hHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHH
Q 008289 293 VSLILAPDRSKLSKRHGATS--VGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKL 370 (571)
Q Consensus 293 ~pli~~~~g~KLSKR~g~~~--v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL 370 (571)
+|+++|.+|+|||||+++.+ +..|++.|++|++++|||+++||++....|+++.+++++.|+++.++++++.||.+||
T Consensus 233 ~pl~l~~~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~~~f~~~~~~~~~~~fd~~kL 312 (314)
T PF00749_consen 233 LPLILNEDGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARLGWSPEAIREFFSLDELIKQFDLSKISKSPAVFDRKKL 312 (314)
T ss_dssp EEEEEETTSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHHHHC-GGGBHSSHEEHHHHHH
T ss_pred eeeeecCCCcEechhhccccccccccccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHHHHhhHhhccCchHHhCHHHh
Confidence 99999999999999999988 8999999999999999999999998888999999999999999999999999999999
Q ss_pred HH
Q 008289 371 RW 372 (571)
Q Consensus 371 ~w 372 (571)
+|
T Consensus 313 ~w 314 (314)
T PF00749_consen 313 DW 314 (314)
T ss_dssp HH
T ss_pred CC
Confidence 98
No 10
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=100.00 E-value=1.3e-93 Score=734.86 Aligned_cols=293 Identities=34% Similarity=0.586 Sum_probs=275.3
Q ss_pred CCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCcc
Q 008289 53 DGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYG 132 (571)
Q Consensus 53 ~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~g 132 (571)
.++|||||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|++||+||||+|||+
T Consensus 3 ~~~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~-------- 74 (299)
T PRK05710 3 MTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGP-------- 74 (299)
T ss_pred CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCC--------
Confidence 357999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCC
Q 008289 133 PYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPK 212 (571)
Q Consensus 133 py~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~ 212 (571)
||+||+|+++|++++++|+++|+||+||||++||++.| +...+.++.|+|+||+++.++. .++++|||+|
T Consensus 75 ~~~QS~r~~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~--~~~~~~~~~y~g~cr~~~~~~~-------~~~~iRlk~~- 144 (299)
T PRK05710 75 VLYQSQRHDAYRAALDRLRAQGLVYPCFCSRKEIAAAA--PAPPDGGGIYPGTCRDLLHGPR-------NPPAWRLRVP- 144 (299)
T ss_pred ceEeeccHHHHHHHHHHHHHCCCceecCCCHHHHHHHh--hhccCCCCcCCCccccCCcccc-------CCceEEEEcC-
Confidence 79999999999999999999999999999999999887 3344567799999999987652 3799999999
Q ss_pred CCceEEEeeccceeeccCC-CCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEE
Q 008289 213 GGSLKISDLIRGEVSWNLD-TLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFA 291 (571)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~-~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~ 291 (571)
++.+.|+|+++|++.++.+ .++||||+|+||+||||||||||||+|||||||||+||++|||+|++||++|||+.|.|+
T Consensus 145 ~~~~~~~D~~~G~~~~~~~~~~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~y~ 224 (299)
T PRK05710 145 DAVIAFDDRLQGRQHQDLALAVGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLPTPRYL 224 (299)
T ss_pred CCceEEEEecceeEeeCCCCCCCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcCCCCCeEE
Confidence 5899999999999988877 899999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCH--HHHHHhcCccccccCCCcccH
Q 008289 292 HVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTL--KQLVEKFTIERVNKSGAIFDS 367 (571)
Q Consensus 292 H~pli~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~--~eli~~F~~~~~~~s~~~fd~ 367 (571)
|+|+|++.+|+|||||+++.+|++ +|++|+ |.||+++|||+++.+.+++++ ++++++|+++++++++++|..
T Consensus 225 H~pll~~~~g~kLSKr~~~~~i~~---~g~~p~-l~~~l~~lG~~~~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 298 (299)
T PRK05710 225 HLPLVLNADGQKLSKQNGAPALDA---AGPLPV-LAAALRFLGQPPPAADASVEELLAQAVAHWDLTRLPRQAEINPA 298 (299)
T ss_pred EeecccCCCCCcccccCCccchhh---cCcCHH-HHHHHHHcCCCCCccccccccCHHHHHHhCCHhhCCcCCccCCC
Confidence 999999999999999999999987 899999 999999999998766777777 799999999999999998863
No 11
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=100.00 E-value=2.5e-91 Score=710.53 Aligned_cols=271 Identities=34% Similarity=0.564 Sum_probs=254.4
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCcccee
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYR 135 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~ 135 (571)
+||||||||||+||||||||||+||++||++||+|||||||||++|++++++++|+++|+||||+|||+ ||+
T Consensus 1 ~~~RFAPSPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~--------~~~ 72 (272)
T TIGR03838 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGE--------VVY 72 (272)
T ss_pred CeeeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCC--------eee
Confidence 479999999999999999999999999999999999999999999999999999999999999999996 799
Q ss_pred ccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCc
Q 008289 136 QSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGS 215 (571)
Q Consensus 136 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~ 215 (571)
||+|+++|++++++|+++|+||+||||++||++.| ++.++.|+|+||+ +. ...+|.++++|||+|. +.
T Consensus 73 QS~r~~~Y~~~~~~L~~~G~aY~C~Ct~eel~~~~-----~~~~~~y~~~cr~-~~-----~~~~~~~~~~Rlk~~~-~~ 140 (272)
T TIGR03838 73 QSQRHALYQAALDRLLAAGLAYPCQCTRKEIAAAA-----GDGGGIYPGTCRN-GL-----LGRPARPAAWRLRVPD-GV 140 (272)
T ss_pred eeCCHHHHHHHHHHHHHcCCEEecCCCHHHHHHHh-----cCCCCCCCchhhc-cc-----ccccCCCceEEEecCC-CC
Confidence 99999999999999999999999999999998876 3456789999998 43 1246889999999995 78
Q ss_pred eEEEeeccceeecc-CCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEee
Q 008289 216 LKISDLIRGEVSWN-LDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVS 294 (571)
Q Consensus 216 ~~~~D~v~G~i~~~-~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~p 294 (571)
+.|+|+++|++.++ +..++||||+|+||+||||||||||||+|||||||||+||++|||+|++||++|||+.|.|+|+|
T Consensus 141 ~~~~D~~~g~~~~~~~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~p 220 (272)
T TIGR03838 141 IAFDDRLQGPQQQDLAAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLP 220 (272)
T ss_pred ceEEEeeeeEEEecCcccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCCCCeEEech
Confidence 99999999999887 66899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHH
Q 008289 295 LILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLV 350 (571)
Q Consensus 295 li~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli 350 (571)
+|++.+|+|||||+++.+|.++ -.++++.|||+++||+++.+.|++|++||+
T Consensus 221 ll~~~~g~kLSKR~~~~~i~~~----~~~~~~~~~l~~lG~~~~~~~~~~~~~~~~ 272 (272)
T TIGR03838 221 LVVNADGEKLSKQNGAPALDLS----HPLPALLAALRFLGLPPPPELAAASPAELL 272 (272)
T ss_pred hhhCCCCCeeeccCCccchhcC----CcHHHHHHHHHHcCCCCCcccccCCHHHhC
Confidence 9999999999999999999886 368899999999999988788999999984
No 12
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=100.00 E-value=1.1e-80 Score=676.77 Aligned_cols=308 Identities=22% Similarity=0.349 Sum_probs=276.2
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCcccee
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYR 135 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~ 135 (571)
||||||||||||||||||||||+||++||++||+|||||||||++|+.++|+++|++||+||||+||++ ||+
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~~--------~~~ 72 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGK--------IRY 72 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCCC--------ceE
Confidence 689999999999999999999999999999999999999999999999999999999999999999986 799
Q ss_pred ccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHH---HHHhcCC----CceEEE
Q 008289 136 QSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQ---KELERGT----PYTYRF 208 (571)
Q Consensus 136 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~---~~~~~g~----~~~iR~ 208 (571)
||+|+++|+++|++|+++|+||+||||+||+++.|+.+ ..++|++.||+++.+|.. ++|.+|. ++++||
T Consensus 73 qS~~~~~~~~~a~~Li~~G~AY~c~cs~eel~~~R~~~----~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~vlR~ 148 (522)
T TIGR00440 73 SSDYFDELYRYAEELIKKGLAYVDELTPEEIREYRGTL----TDPGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRA 148 (522)
T ss_pred ccccHHHHHHHHHHHHHcCCEEeecCCHHHHHHhhhhc----ccCCCCCcccCCCHHHHHHHHHHHhcCcccCCCeEEEE
Confidence 99999999999999999999999999999999988533 246799999999998864 3676665 799999
Q ss_pred ecCCC-CceEEEeeccceeeccCCCC--CCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCC
Q 008289 209 RVPKG-GSLKISDLIRGEVSWNLDTL--GDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGF 285 (571)
Q Consensus 209 k~~~~-~~~~~~D~v~G~i~~~~~~~--~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~ 285 (571)
|++.. ....+.|.|.|++.+.+... +++++ +||||||||||||+|||||||||+||++||+.|.++++.+++
T Consensus 149 Kid~~~~n~~~rD~V~~Ri~~~~h~~~gdk~~i-----yPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~ 223 (522)
T TIGR00440 149 KIDMASPFPVMRDPVAYRIKFAPHHQTGTKWCI-----YPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHI 223 (522)
T ss_pred eCcCCCCCceEeeeeEEEEecCCCCCCCCCeeE-----EeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCc
Confidence 99865 47889999999998876543 34554 899999999999999999999999999999999999999999
Q ss_pred C-CCcEEEeeeeecCCCCcccccCCCC----------------chHHHHHCCCCHHHHHHHHHHhCCCCCCC-cccCCHH
Q 008289 286 S-MPYFAHVSLILAPDRSKLSKRHGAT----------------SVGQFREMGYLPQAMVNYLALLGWGDGTE-NEFFTLK 347 (571)
Q Consensus 286 ~-~P~f~H~pli~~~~g~KLSKR~g~~----------------~v~~~r~~G~~Peai~n~l~~lG~~~~~~-~e~~s~~ 347 (571)
. .|...|+.. +|.+|+|||||++.. ||.+||++||+||||+|||+++||+..+. .++++++
T Consensus 224 ~~~P~~~~F~r-ln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~ 302 (522)
T TIGR00440 224 FPRPAQYEFSR-LNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLE 302 (522)
T ss_pred cCCCceEEEEE-ECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHH
Confidence 7 784334333 567999999999864 89999999999999999999999997654 4899999
Q ss_pred HHHHhcCccccccCCCcccHHHH--HHhhHHH-HhcC
Q 008289 348 QLVEKFTIERVNKSGAIFDSTKL--RWMNGQH-LRAI 381 (571)
Q Consensus 348 eli~~F~~~~~~~s~~~fd~~kL--~wlN~~~-ir~l 381 (571)
++++.|...++++++++||+.|| .|+|..| +..+
T Consensus 303 ~~~r~f~~~~~~r~~av~d~~kl~i~~~~~~~~~~~~ 339 (522)
T TIGR00440 303 SCIREDLNENAPRAMAVIDPVEVVIENLSDEYELATI 339 (522)
T ss_pred HHHHHhhhhcCcccccccccceEEEecCCCCceEEec
Confidence 99999999999999999999999 8888777 6544
No 13
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=100.00 E-value=8.9e-80 Score=611.18 Aligned_cols=230 Identities=55% Similarity=0.963 Sum_probs=225.3
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccce
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy 134 (571)
+|+|||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|++||+||||+||++ ||
T Consensus 1 ~v~~RFAPsPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~--------~~ 72 (230)
T cd00418 1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEG--------PY 72 (230)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCC--------ee
Confidence 4899999999999999999999999999999999999999999999999999999999999999999986 79
Q ss_pred eccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCC
Q 008289 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGG 214 (571)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~ 214 (571)
+||+|+++|++++++|+++|
T Consensus 73 ~QS~r~~~y~~~~~~L~~~g------------------------------------------------------------ 92 (230)
T cd00418 73 RQSDRFDLYRAYAEELIKKG------------------------------------------------------------ 92 (230)
T ss_pred ehhcCHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 99999999999999999999
Q ss_pred ceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEee
Q 008289 215 SLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVS 294 (571)
Q Consensus 215 ~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~p 294 (571)
|+||||||||||||+|||||||||+||++|||+|++||++||++.|.|+|+|
T Consensus 93 ----------------------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~p 144 (230)
T cd00418 93 ----------------------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFP 144 (230)
T ss_pred ----------------------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCCCeEEEee
Confidence 8999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHhh
Q 008289 295 LILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMN 374 (571)
Q Consensus 295 li~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wlN 374 (571)
+|++.+|+|||||+++.+|++||++|++|+||+|||+.|||+++.+.+++++++++++|+++++++++++||++||.|+|
T Consensus 145 ll~~~~g~KLSKr~~~~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~li~~f~~~~~~~~~~~~d~~kL~~~N 224 (230)
T cd00418 145 RLLLEDGTKLSKRKLNTTLRALRRRGYLPEALRNYLALIGWSKPDGHELFTLEEMIAAFSVERVNSADATFDWAKLEWLN 224 (230)
T ss_pred eeeCCCCCCccCcCCCcCHHHHHHCCCcHHHHHHHHHHcCCCCCCCccccCHHHHHHhcCHhhCCCCCcccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999987778999999999999999999999999999999999
Q ss_pred HHHHhc
Q 008289 375 GQHLRA 380 (571)
Q Consensus 375 ~~~ir~ 380 (571)
++||+.
T Consensus 225 ~~~l~~ 230 (230)
T cd00418 225 REYIRE 230 (230)
T ss_pred HHHhcC
Confidence 999974
No 14
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=100.00 E-value=2.1e-78 Score=658.04 Aligned_cols=260 Identities=26% Similarity=0.371 Sum_probs=235.6
Q ss_pred CCCCCCCCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCC
Q 008289 47 TNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPG 126 (571)
Q Consensus 47 ~~~~~~~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~ 126 (571)
.+|++.+++|+||||||||||||||||||||+||++||++||+|||||||||++|+.++|+++|++||+||||+||+
T Consensus 3 ~L~~a~~g~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~--- 79 (523)
T PLN03233 3 ALEGAIAGQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDS--- 79 (523)
T ss_pred cCCCCCCCeEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCC---
Confidence 36788888999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHH---HHh----
Q 008289 127 VGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQK---ELE---- 199 (571)
Q Consensus 127 ~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~---~~~---- 199 (571)
+|+||+|+++|+++|++|+++|+||+||||+||+++.|+. .|.+.||+++.+|..+ +|.
T Consensus 80 ------~~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~--------~~~~~~R~~s~ee~l~~~~~m~~G~~ 145 (523)
T PLN03233 80 ------VSFTSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERAD--------RAESKHRNQSPEEALEMFKEMCSGKE 145 (523)
T ss_pred ------CccccccHHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhh--------hccCccccCCHHHHHHHHHHHhcccc
Confidence 5899999999999999999999999999999999988743 3567899999988543 343
Q ss_pred cCCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEecCC------------ccccchhhhHhhhcCCCcEEEeCC
Q 008289 200 RGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNG------------QPVYNFCVTVDDATMAISHVIRAE 267 (571)
Q Consensus 200 ~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG------------~PtY~fA~vVDD~~m~ItHVIRG~ 267 (571)
.+.++++|+|++. .+.+.+++||||+|+|| +||||||||||||+|||||||||+
T Consensus 146 ~~~~~~lR~K~d~--------------~~~n~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~ 211 (523)
T PLN03233 146 EGGAWCLRAKIDM--------------QSDNGTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTT 211 (523)
T ss_pred cCCCeEEEEeCcc--------------cCCCCCCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEech
Confidence 3457888888642 34566899999999995 799999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCCcccccC-------CCC---------chHHHHHCCCCHHHHHHHHH
Q 008289 268 EHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRH-------GAT---------SVGQFREMGYLPQAMVNYLA 331 (571)
Q Consensus 268 Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~-------g~~---------~v~~~r~~G~~Peai~n~l~ 331 (571)
||++|||+|.+||++|||+.|.|.| +..++.+|+|||||+ |.+ ||.+||++||+||||+||++
T Consensus 212 E~~~~t~~q~~l~~aLg~~~P~~~~-f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~ 290 (523)
T PLN03233 212 EYDDRDAQFFWIQKALGLRRPRIHA-FARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMC 290 (523)
T ss_pred hhhcCCHHHHHHHHHhCCCCCeeee-eEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHH
Confidence 9999999999999999999999944 777899999999997 544 69999999999999999999
Q ss_pred HhCCCCC
Q 008289 332 LLGWGDG 338 (571)
Q Consensus 332 ~lG~~~~ 338 (571)
.+||+..
T Consensus 291 ~~G~s~~ 297 (523)
T PLN03233 291 SQGASRR 297 (523)
T ss_pred HhCCCCC
Confidence 9999764
No 15
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.5e-78 Score=660.73 Aligned_cols=281 Identities=29% Similarity=0.445 Sum_probs=247.3
Q ss_pred cCCCCCCCCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCC
Q 008289 46 STNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGP 125 (571)
Q Consensus 46 ~~~~~~~~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp 125 (571)
-++|++.+++|+||||||||||||||||||||+||++||++||+|||||||||++|+.++|+++|++||+||||+||++
T Consensus 43 ~~L~~a~~~~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~wDe~- 121 (601)
T PTZ00402 43 LQLTNAEEGKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWDVG- 121 (601)
T ss_pred ccCCCCCCCeeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCCCCCc-
Confidence 6788998999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHH---HHhcC-
Q 008289 126 GVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQK---ELERG- 201 (571)
Q Consensus 126 ~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~---~~~~g- 201 (571)
||+||+|+++|+++|++|+++|+||+|+||+||+++.|. ..|++.||+++.+|..+ +|.+|
T Consensus 122 -------~~~QSdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~--------~g~p~~~R~~s~ee~l~~~~~m~~g~ 186 (601)
T PTZ00402 122 -------PTYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRF--------DGVPTKYRDISVEETKRLWNEMKKGS 186 (601)
T ss_pred -------eeeccccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHh--------CCCCCCCCCCCHHHHHHHHHhccccc
Confidence 799999999999999999999999999999999977652 24788899999887543 33333
Q ss_pred ---CCceEEEecCCCCceEEEeeccceeecc--CCCCCCeEEEecC------------CccccchhhhHhhhcCCCcEEE
Q 008289 202 ---TPYTYRFRVPKGGSLKISDLIRGEVSWN--LDTLGDFVIMRSN------------GQPVYNFCVTVDDATMAISHVI 264 (571)
Q Consensus 202 ---~~~~iR~k~~~~~~~~~~D~v~G~i~~~--~~~~~D~Vl~Rsd------------G~PtY~fA~vVDD~~m~ItHVI 264 (571)
..+++| +++.+. +.+++||||+|.+ |+||||||||||||+|||||||
T Consensus 187 ~~~~~~~lR----------------~kid~~~~n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvl 250 (601)
T PTZ00402 187 AEGQETCLR----------------AKISVDNENKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHAL 250 (601)
T ss_pred cCCCceEEE----------------EecccCCCCCCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEe
Confidence 234444 444433 3478999999975 9999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCCcccccCCC----------------CchHHHHHCCCCHHHHHH
Q 008289 265 RAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPQAMVN 328 (571)
Q Consensus 265 RG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g~----------------~~v~~~r~~G~~Peai~n 328 (571)
||+||++|||+|.+||++|||+.|.|+|+|+ +|.+|+|||||++. .+|..||++||+|+||++
T Consensus 251 Rg~E~l~~tp~q~~L~~aLg~~~P~~~h~~r-Ln~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~ 329 (601)
T PTZ00402 251 RTNEYHDRNDQYYWFCDALGIRKPIVEDFSR-LNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQ 329 (601)
T ss_pred echhhhhCcHHHHHHHHHhCCCCceEEEEee-EcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHH
Confidence 9999999999999999999999999999996 79999999999975 356777778888888877
Q ss_pred HHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHhhHHHHhcCC
Q 008289 329 YLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIP 382 (571)
Q Consensus 329 ~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wlN~~~ir~l~ 382 (571)
|+..+|+ +++++.||++||.|+|++||+...
T Consensus 330 f~~~~Gv-----------------------sk~~~~~d~~~L~~~nr~~l~~~a 360 (601)
T PTZ00402 330 FVQEQGM-----------------------SKTVNFMEWSKLWYFNTQILDPSV 360 (601)
T ss_pred HHHHhCC-----------------------CCCCcccCHHHHHHHHHHHHhhcC
Confidence 7777775 667889999999999999998653
No 16
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=5.4e-77 Score=595.26 Aligned_cols=239 Identities=65% Similarity=1.123 Sum_probs=234.0
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccce
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy 134 (571)
+|+|||||||||+|||||+|+||+||++||++||+|||||||||++|+.++++++|+++|+||||+||+||..+|+|+||
T Consensus 1 ~v~~RfAPsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~ 80 (239)
T cd00808 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPY 80 (239)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCC
Q 008289 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGG 214 (571)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~ 214 (571)
+||+|+++|++++++|+++|
T Consensus 81 ~QS~r~~~y~~~~~~L~~~g------------------------------------------------------------ 100 (239)
T cd00808 81 RQSERLEIYRKYAEKLLEKG------------------------------------------------------------ 100 (239)
T ss_pred eeeCCHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 99999999999999999988
Q ss_pred ceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEee
Q 008289 215 SLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVS 294 (571)
Q Consensus 215 ~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~p 294 (571)
||+||||||+||||++|||||||||+||+++|++|++++++||++.|.|.|+|
T Consensus 101 ---------------------------dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~p 153 (239)
T cd00808 101 ---------------------------DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLP 153 (239)
T ss_pred ---------------------------CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCCCCCceEeec
Confidence 89999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHhh
Q 008289 295 LILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMN 374 (571)
Q Consensus 295 li~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wlN 374 (571)
++++.+|.|||||+|+.+|+.||++|+.|+||++|++.+||++....+++++++++++|+++++++++++||.+||.|+|
T Consensus 154 ll~~~~g~KLSKR~~~~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~d~~kL~~~n 233 (239)
T cd00808 154 LILNPDGKKLSKRKGDTSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEELIELFDLERVSKSPAIFDPEKLDWLN 233 (239)
T ss_pred cccCCCCCcccCCCCCccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHHHhcCCHhhCCcCcCcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999987767999999999999999999999999999999999
Q ss_pred HHHHhc
Q 008289 375 GQHLRA 380 (571)
Q Consensus 375 ~~~ir~ 380 (571)
++||+.
T Consensus 234 ~~~l~~ 239 (239)
T cd00808 234 GQYIRE 239 (239)
T ss_pred HHHhhC
Confidence 999973
No 17
>PLN02859 glutamine-tRNA ligase
Probab=100.00 E-value=2.1e-77 Score=669.62 Aligned_cols=298 Identities=23% Similarity=0.388 Sum_probs=268.1
Q ss_pred CCCCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q 008289 51 KVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGD 130 (571)
Q Consensus 51 ~~~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~ 130 (571)
+.+++||||||||||||||||||||||+||+|||++||+|+|||||||++|+.++|+++|+++|+|||++||+
T Consensus 260 ~t~g~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~~~~I~edL~WLG~~~d~------- 332 (788)
T PLN02859 260 ATGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYIDHIEEIVEWMGWEPFK------- 332 (788)
T ss_pred hcCCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHHHHHHHHHHHHcCCCCCC-------
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHH---HHH-----hcCC
Q 008289 131 YGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQ---KEL-----ERGT 202 (571)
Q Consensus 131 ~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~---~~~-----~~g~ 202 (571)
+|+||+|++.++++|.+|+++|+||+||||++|+++.|+.+. ...||+.+.+|.. +.| ..|
T Consensus 333 --~~~qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~--------~sp~Rd~s~eenl~lfe~m~~g~~~~G- 401 (788)
T PLN02859 333 --ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKM--------NSPWRDRPIEESLKLFEDMRRGLIEEG- 401 (788)
T ss_pred --cccccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhc--------cCCCCCCChHHhhhhhHHHHhchhccC-
Confidence 799999996555799999999999999999999999886432 3457888876642 333 345
Q ss_pred CceEEEecCC-CCceEEEeeccceeeccCC--CCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHH
Q 008289 203 PYTYRFRVPK-GGSLKISDLIRGEVSWNLD--TLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALI 279 (571)
Q Consensus 203 ~~~iR~k~~~-~~~~~~~D~v~G~i~~~~~--~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l 279 (571)
++++|+|++. .+.+.+.|.|.|+|.+.+. .-+|++| +||||||||||||+|||||||||+||++|||+|.+|
T Consensus 402 ~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~i-----yPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl 476 (788)
T PLN02859 402 KATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI-----YPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWL 476 (788)
T ss_pred CeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCeEE-----EecccccccccccccCCceEeechhhhcCCHHHHHH
Confidence 5899999986 5789999999999998766 4478888 899999999999999999999999999999999999
Q ss_pred HHHhCCCCCcEEEeeeeecCCCCcccccCCC----------------CchHHHHHCCCCHHHHHHHHHHhCCCCCCCccc
Q 008289 280 YKALGFSMPYFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPQAMVNYLALLGWGDGTENEF 343 (571)
Q Consensus 280 ~~alg~~~P~f~H~pli~~~~g~KLSKR~g~----------------~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~ 343 (571)
|++|||..|.|+|+| ++|.+|+|||||++. .||.+||++||+|+||+||++++||+.. +.|+
T Consensus 477 ~~aLg~~~P~~~~f~-rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~-~~e~ 554 (788)
T PLN02859 477 LDSLGLYQPYVWEYS-RLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRS-DNSL 554 (788)
T ss_pred HHHcCCCCCcEEeee-eECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCC-CCce
Confidence 999999999999999 579999999999965 4899999999999999999999999975 4579
Q ss_pred CCHHHHHHhcCccccccCC----CcccHHHHHHhh
Q 008289 344 FTLKQLVEKFTIERVNKSG----AIFDSTKLRWMN 374 (571)
Q Consensus 344 ~s~~eli~~F~~~~~~~s~----~~fd~~kL~wlN 374 (571)
+++++| +.|+++.+++++ +++|+.|+.+.|
T Consensus 555 i~~~~L-e~~~r~~l~~~a~R~maV~dp~kv~i~n 588 (788)
T PLN02859 555 IRMDRL-EHHIREELNKTAPRTMVVLHPLKVVITN 588 (788)
T ss_pred ecHHHH-HhhCHHhhCCcCcchheecCCeEEEEec
Confidence 999999 999999999987 699999998655
No 18
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.6e-77 Score=647.27 Aligned_cols=273 Identities=24% Similarity=0.405 Sum_probs=236.4
Q ss_pred cccceecccCCCCCCCCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHc
Q 008289 38 RFSVAASLSTNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWL 117 (571)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wl 117 (571)
.|.-.--.+++++...++|+||||||||||||||||||||+||++||++||+|+|||||||++|+.++|+++|++||+||
T Consensus 12 ~f~~~~~~~dl~~~~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wL 91 (554)
T PRK05347 12 NFIRQIIDEDLASGKHTRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVRWL 91 (554)
T ss_pred cHHHHHHHhHHhcCCcCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHHHc
Confidence 33333334555555566899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHH-
Q 008289 118 GLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQK- 196 (571)
Q Consensus 118 Gl~~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~- 196 (571)
||+||++ ||+||+|+++|+++|++|+++|+||+||||+||+++.|+.+...| +++.||+++.+|..+
T Consensus 92 Gi~~d~~--------~~~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~~g----~~~~~R~~s~eenl~~ 159 (554)
T PRK05347 92 GFDWSGE--------LRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPG----KNSPYRDRSVEENLDL 159 (554)
T ss_pred CCCCCCC--------ceeeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhhcC----CCCCccCCCHHHHHHH
Confidence 9999986 799999999999999999999999999999999999998766544 567899999988654
Q ss_pred --HHhcCCCceEEEecCCCCceEEEeeccceeeccC--CCCCCeEEEec-------CC-----ccccchhhhHhhhcCCC
Q 008289 197 --ELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNL--DTLGDFVIMRS-------NG-----QPVYNFCVTVDDATMAI 260 (571)
Q Consensus 197 --~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~--~~~~D~Vl~Rs-------dG-----~PtY~fA~vVDD~~m~I 260 (571)
+|.+|.. + +++. .|||++.+.. ..++|+||+|+ +| +||||||||||||+|||
T Consensus 160 ~~~m~~G~~-------~-~g~~----vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gI 227 (554)
T PRK05347 160 FERMRAGEF-------P-EGSA----VLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGI 227 (554)
T ss_pred HHHHHCCCC-------C-CCcE----EEEEEeeccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCC
Confidence 4778862 1 2333 2566665543 47899999999 58 99999999999999999
Q ss_pred cEEEeCCCCCCCHHHHHHHHHHhCC-CCC---cEEEeeeeecCCCCcccccCCC----------------CchHHHHHCC
Q 008289 261 SHVIRAEEHLPNTLRQALIYKALGF-SMP---YFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMG 320 (571)
Q Consensus 261 tHVIRG~Dhl~ntp~q~~l~~alg~-~~P---~f~H~pli~~~~g~KLSKR~g~----------------~~v~~~r~~G 320 (571)
||||||+||++|||+|.+||++||+ ..| .|+|+ +.+|+|||||++. .||.+||++|
T Consensus 228 THvlRg~E~~~~t~~~~~i~~alg~~~~P~~~~F~rl----n~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG 303 (554)
T PRK05347 228 THSLCTLEFEDHRPLYDWVLDNLPIPPHPRQYEFSRL----NLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRG 303 (554)
T ss_pred ceEEeccccccChHHHHHHHHHcCCCCCCceEEEEEE----CCCCCccccccchhccccCcccCccCCcchhHHHHHHCC
Confidence 9999999999999999999999996 479 56665 6699999999954 3799999999
Q ss_pred CCHHHHHHHHHHhCCCCC
Q 008289 321 YLPQAMVNYLALLGWGDG 338 (571)
Q Consensus 321 ~~Peai~n~l~~lG~~~~ 338 (571)
|+||||+||++++||+..
T Consensus 304 ~~PeAi~nf~~~lG~s~~ 321 (554)
T PRK05347 304 YTPESIREFCERIGVTKQ 321 (554)
T ss_pred CCHHHHHHHHHHhCCCCC
Confidence 999999999999999753
No 19
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.8e-75 Score=637.88 Aligned_cols=281 Identities=32% Similarity=0.555 Sum_probs=249.9
Q ss_pred cCCCCCCCCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCc--ccCcHHHHHHHHHHHHHcCCCCCC
Q 008289 46 STNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDL--ERSTKESEEAVLQDLSWLGLDWDE 123 (571)
Q Consensus 46 ~~~~~~~~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~--~R~~~~~~~~i~~~L~wlGl~~De 123 (571)
.++|++.+++|+|||||||||+|||||||||++||++||++||+|||||||||+ +|+.++|+++|++||+||||+||+
T Consensus 92 p~L~~ae~g~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~ 171 (567)
T PRK04156 92 PPLPNAEKGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDE 171 (567)
T ss_pred CCCCCCCCCeEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCC
Confidence 577888888999999999999999999999999999999999999999999999 999999999999999999999997
Q ss_pred CCCCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHH---HHHhc
Q 008289 124 GPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQ---KELER 200 (571)
Q Consensus 124 gp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~---~~~~~ 200 (571)
+|+||+|+++|+++|++|+++|+||+||||++++++.|. ..|++.||+++.++.. ++|.+
T Consensus 172 ---------~~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~--------~g~~~~~R~~~~ee~l~~~e~m~~ 234 (567)
T PRK04156 172 ---------VVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRD--------AGKPCPHRDKSPEENLELWEKMLD 234 (567)
T ss_pred ---------ccCcccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHh--------cCCCCCCcCCCHHHHHHHHHHhhc
Confidence 689999999999999999999999999999999977763 2367889999988754 45656
Q ss_pred CC----CceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEecC---------C---ccccchhhhHhhhcCCCcEEE
Q 008289 201 GT----PYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSN---------G---QPVYNFCVTVDDATMAISHVI 264 (571)
Q Consensus 201 g~----~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rsd---------G---~PtY~fA~vVDD~~m~ItHVI 264 (571)
|. ++++|+|++. ...+.+++|||++|.+ | +||||||++||||+|||||||
T Consensus 235 G~~~~g~~vlR~k~d~--------------~~~n~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHVi 300 (567)
T PRK04156 235 GEYKEGEAVVRVKTDL--------------EHPNPSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVL 300 (567)
T ss_pred CccccCCeEEEEECcc--------------cCCCCCccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEE
Confidence 65 6899999863 2344578999999973 3 899999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCCcccccCCC----------------CchHHHHHCCCCHHHHHH
Q 008289 265 RAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPQAMVN 328 (571)
Q Consensus 265 RG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g~----------------~~v~~~r~~G~~Peai~n 328 (571)
||+||++|||+|.+||++|||+.|.|+|+|+|. .+|+|||||++. .+|..||++||+|+||+|
T Consensus 301 Rg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~-~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~ 379 (567)
T PRK04156 301 RGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLK-IEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRE 379 (567)
T ss_pred cccccccChHHHHHHHHHcCCCCceEEEcceec-CCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999999999999999974 689999999932 689999999999999999
Q ss_pred HHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHhhHHHHhcC
Q 008289 329 YLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAI 381 (571)
Q Consensus 329 ~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wlN~~~ir~l 381 (571)
||+.+||+. +++.|++++|..+|+++|...
T Consensus 380 fl~~lG~s~-----------------------~~~~~~~~~L~~~nr~~ld~~ 409 (567)
T PRK04156 380 LIIEVGVKE-----------------------TDATISWENLYAINRKLIDPI 409 (567)
T ss_pred HHHHhCCCC-----------------------CCcccCHHHHHHHHHHHHhcc
Confidence 999999953 455677777777777777654
No 20
>PLN02907 glutamate-tRNA ligase
Probab=100.00 E-value=1.4e-74 Score=653.97 Aligned_cols=282 Identities=26% Similarity=0.344 Sum_probs=253.3
Q ss_pred cCCCCCCCCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCC
Q 008289 46 STNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGP 125 (571)
Q Consensus 46 ~~~~~~~~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp 125 (571)
.+++++..++||||||||||||||||||||||+||+|||++||+|||||||||++|+.++|+++|++||+||||+||+
T Consensus 204 ~~L~~~~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~-- 281 (722)
T PLN02907 204 VDLPGAEEGKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDA-- 281 (722)
T ss_pred ccCccCCCCceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCC--
Confidence 578888888999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHH---HHHhc--
Q 008289 126 GVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQ---KELER-- 200 (571)
Q Consensus 126 ~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~---~~~~~-- 200 (571)
+|+||+|+++|+++|++|+++|+||+|+|+++++.+.|. ..|+++||+++.+|.. ++|.+
T Consensus 282 -------~~~qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~--------~~~~~~~R~~~~ee~~~~~~~m~~g~ 346 (722)
T PLN02907 282 -------VTYTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERM--------DGIESKCRNNSVEENLRLWKEMIAGS 346 (722)
T ss_pred -------cccccccHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHh--------cCCCCCccCCCHHHHHHHHHHHhccc
Confidence 589999999999999999999999999999999887653 1599999999998854 44544
Q ss_pred --CCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEecCC------------ccccchhhhHhhhcCCCcEEEeC
Q 008289 201 --GTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNG------------QPVYNFCVTVDDATMAISHVIRA 266 (571)
Q Consensus 201 --g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG------------~PtY~fA~vVDD~~m~ItHVIRG 266 (571)
|.++++|+|++. ..++.+++|+|+.|+|| +||||||||||||+|||||||||
T Consensus 347 ~~~~~~~lR~k~d~--------------~~~n~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg 412 (722)
T PLN02907 347 ERGLQCCVRGKLDM--------------QDPNKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRS 412 (722)
T ss_pred ccCCCeEEEEEccc--------------CCCCCCcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeec
Confidence 457899999862 34555789999999987 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCCcccccC-------CC---------CchHHHHHCCCCHHHHHHHH
Q 008289 267 EEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRH-------GA---------TSVGQFREMGYLPQAMVNYL 330 (571)
Q Consensus 267 ~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~-------g~---------~~v~~~r~~G~~Peai~n~l 330 (571)
+||++|||+|++||++|||+.|.+.|++. +|.+|+|||||+ |. .++.++|++||+||||++|+
T Consensus 413 ~e~~~~t~~q~~l~~~lg~~~p~~~~f~~-l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~ 491 (722)
T PLN02907 413 SEYHDRNAQYYRILEDMGLRKVHIWEFSR-LNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFI 491 (722)
T ss_pred HhhhhChHHHHHHHHHcCCCCCeeEEEEE-EcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999987777776 588999999999 43 36899999999999999999
Q ss_pred HHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHhhHHHHhcCC
Q 008289 331 ALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIP 382 (571)
Q Consensus 331 ~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wlN~~~ir~l~ 382 (571)
..+||+ ++++.||++||.|+|+++|....
T Consensus 492 ~~~g~s-----------------------~~~~~~~~~~l~~~nr~~id~~a 520 (722)
T PLN02907 492 LSQGAS-----------------------KNLNLMEWDKLWTINKKIIDPVC 520 (722)
T ss_pred HHhCCC-----------------------cCCccccHHHHHHHHHHHhccCC
Confidence 999984 44778999999999999997653
No 21
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=100.00 E-value=4.2e-74 Score=630.33 Aligned_cols=262 Identities=31% Similarity=0.541 Sum_probs=237.9
Q ss_pred cCCCCCCCCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCC
Q 008289 46 STNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGP 125 (571)
Q Consensus 46 ~~~~~~~~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp 125 (571)
.++|++..++|+|||||||||||||||||+||+||++||++||+|||||||||++|+.++|+++|++||+|||+.||+
T Consensus 84 ~~L~~a~~~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLGi~~d~-- 161 (560)
T TIGR00463 84 IELPGAKMGEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLGVKGDE-- 161 (560)
T ss_pred CCCCCCcCCeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcCCCCCc--
Confidence 367777778899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHH---HHHHhc--
Q 008289 126 GVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEV---QKELER-- 200 (571)
Q Consensus 126 ~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~---~~~~~~-- 200 (571)
+|+||+|++.|.++|++|+++|+||+|+||++++++.|. ..|+++||+++.+|. +++|.+
T Consensus 162 -------~~~qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~~~r~--------~g~~~~cR~~s~eenl~~fe~m~~g~ 226 (560)
T TIGR00463 162 -------VVYQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFRELRN--------DGVACACRDRSVEENLEIWEEMLNGT 226 (560)
T ss_pred -------cccccccHHHHHHHHHHHHHcCCceeecCCHHHHHHHHh--------CCCCCCccCCCHHHHHHHHHHHhccc
Confidence 589999999999999999999999999999999988773 248899999998764 345654
Q ss_pred --CCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEecCC------------ccccchhhhHhhhcCCCcEEEeC
Q 008289 201 --GTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNG------------QPVYNFCVTVDDATMAISHVIRA 266 (571)
Q Consensus 201 --g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG------------~PtY~fA~vVDD~~m~ItHVIRG 266 (571)
|.++++|+|++. ...+..++|+|++|.++ +||||||||||||+|||||||||
T Consensus 227 ~~~~~~~lR~K~d~--------------~~~n~~~rD~V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg 292 (560)
T TIGR00463 227 EEGGKVVVRAKTDY--------------KHKNPAIRDWVIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRG 292 (560)
T ss_pred ccCCCeEEEEECCC--------------cCCCccccCcEEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEec
Confidence 467899999862 33455889999999964 89999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCCcccccCC----------------CCchHHHHHCCCCHHHHHHHH
Q 008289 267 EEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHG----------------ATSVGQFREMGYLPQAMVNYL 330 (571)
Q Consensus 267 ~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g----------------~~~v~~~r~~G~~Peai~n~l 330 (571)
.||++||++|+++|++|||..|.|.|+|++++.+|.|||||+. ..+|..||++||+|+||+||+
T Consensus 293 ~E~~~nT~rq~yl~~~lg~~~P~~~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~ 372 (560)
T TIGR00463 293 KDHIDNERKQQYIYMYFGWELPEFIHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFM 372 (560)
T ss_pred hhhhcCCHHHHHHHHHcCCCCCeEEEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999989998762 257999999999999999999
Q ss_pred HHhCCCCC
Q 008289 331 ALLGWGDG 338 (571)
Q Consensus 331 ~~lG~~~~ 338 (571)
..+||+..
T Consensus 373 ~~~G~s~~ 380 (560)
T TIGR00463 373 LSIGVKRN 380 (560)
T ss_pred HHhCCCCC
Confidence 99999753
No 22
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=100.00 E-value=8.3e-73 Score=638.47 Aligned_cols=293 Identities=27% Similarity=0.403 Sum_probs=247.7
Q ss_pred cCCCCCCCCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCC
Q 008289 46 STNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGP 125 (571)
Q Consensus 46 ~~~~~~~~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp 125 (571)
.+++....++|+|||||||||||||||||+||+||+|||++||+|+|||||||++|+.++|+++|++||+||||+||++
T Consensus 22 ~~l~~g~~~~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl~wLG~~wd~~- 100 (771)
T PRK14703 22 EDLEAGRYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFDWGEH- 100 (771)
T ss_pred HHHhcCCCCceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHHHHcCCCCCCC-
Confidence 4454445678999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHH---HHHhcCC
Q 008289 126 GVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQ---KELERGT 202 (571)
Q Consensus 126 ~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~---~~~~~g~ 202 (571)
||+||+|+++|+++|++|+++|+||+||||++|+++.|..+... .|...||+++.+|.. ++|.+|.
T Consensus 101 -------~~~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~~----g~~~~~R~~s~ee~l~~~~~m~~G~ 169 (771)
T PRK14703 101 -------LYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTEP----GTPSPYRDRSVEENLDLFRRMRAGE 169 (771)
T ss_pred -------ceEeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhhc----CCCCCCCCCCHHHHHHHHHHHhCCC
Confidence 79999999999999999999999999999999999999765543 456677999998864 4677887
Q ss_pred ----CceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEecC------------CccccchhhhHhhhcCCCcEEEeC
Q 008289 203 ----PYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSN------------GQPVYNFCVTVDDATMAISHVIRA 266 (571)
Q Consensus 203 ----~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rsd------------G~PtY~fA~vVDD~~m~ItHVIRG 266 (571)
++++|+|++ +..++..++|+|++|++ ++||||||||||||+|||||||||
T Consensus 170 ~~~g~~vlR~Kid--------------~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg 235 (771)
T PRK14703 170 FPDGAHVLRAKID--------------MSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICT 235 (771)
T ss_pred CcCCCeEEEEEee--------------ccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccccCCcEEEec
Confidence 678888863 24455688999999984 489999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhCCC-C-C---cEEEeeeeecCCCCcccccC-------CCC---------chHHHHHCCCCHHH
Q 008289 267 EEHLPNTLRQALIYKALGFS-M-P---YFAHVSLILAPDRSKLSKRH-------GAT---------SVGQFREMGYLPQA 325 (571)
Q Consensus 267 ~Dhl~ntp~q~~l~~alg~~-~-P---~f~H~pli~~~~g~KLSKR~-------g~~---------~v~~~r~~G~~Pea 325 (571)
+||++||++|.+||++||+. + | .|+|+++ .|+|||||+ |.+ ||..||++||+|||
T Consensus 236 ~E~~~~~~~~~~l~~~l~~~~~~P~~~~f~rl~l----~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peA 311 (771)
T PRK14703 236 LEFENNRAIYDWVLDHLGPWPPRPRQYEFARLAL----GYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEA 311 (771)
T ss_pred HhhhhccHHHHHHHHHhCCCCCCcceeEEEEecc----CCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHH
Confidence 99999999999999999654 3 5 6777777 588999999 443 79999999999999
Q ss_pred HHHHHHHhCCCCCCCcccCCHHHHHHhc---Cccccc-cCCCcccHHHHH
Q 008289 326 MVNYLALLGWGDGTENEFFTLKQLVEKF---TIERVN-KSGAIFDSTKLR 371 (571)
Q Consensus 326 i~n~l~~lG~~~~~~~e~~s~~eli~~F---~~~~~~-~s~~~fd~~kL~ 371 (571)
|+||+..+||+..+ ..++++.| +.+ .++... +-.++.|+.|+.
T Consensus 312 i~~f~~~lG~s~~~--~~i~~~~L-~~~~R~~ld~~a~R~~~V~~p~~v~ 358 (771)
T PRK14703 312 IRDFADQIGVAKTN--STVDIGVL-EFAIRDDLNRRAPRVMAVLDPLKVV 358 (771)
T ss_pred HHHHHHHhCCCccC--ceecHHHH-HHHHHHHhccCCCceEEEcCCeEEE
Confidence 99999999998753 23444333 233 333322 245777887765
No 23
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-70 Score=597.73 Aligned_cols=296 Identities=23% Similarity=0.322 Sum_probs=252.0
Q ss_pred CCCCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q 008289 51 KVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGD 130 (571)
Q Consensus 51 ~~~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~ 130 (571)
.++++|||||||||||||||||||+||+||++||++||+|+|||||||++|+.++|+++|+++|+||||+||+
T Consensus 47 ~~~gkv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDTDp~r~~~e~~~~I~~dL~wLGi~~D~------- 119 (574)
T PTZ00437 47 VTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPETEEQVYIDAIMEMVKWMGWKPDW------- 119 (574)
T ss_pred ccCCcEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCC-------
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHH---HHHHhcC----CC
Q 008289 131 YGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEV---QKELERG----TP 203 (571)
Q Consensus 131 ~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~---~~~~~~g----~~ 203 (571)
+++||+|++.|+++|++|+++|+||+||||++|+++.|..+ .++.||+++.+|. +++|.+| ..
T Consensus 120 --~~~qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~~R~~~--------~~~~~R~~~~eenL~lfe~M~~g~~~~g~ 189 (574)
T PTZ00437 120 --VTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQREQR--------EDSPWRNRSVEENLLLFEHMRQGRYAEGE 189 (574)
T ss_pred --CCcCchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHHHhhcc--------cCCccccCCHHHHHHHHHHHhhcccccCC
Confidence 46899999988899999999999999999999999988632 2577999998884 4556555 35
Q ss_pred ceEEEecCCCC-ceEEEeeccceeeccCC-CCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHH
Q 008289 204 YTYRFRVPKGG-SLKISDLIRGEVSWNLD-TLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYK 281 (571)
Q Consensus 204 ~~iR~k~~~~~-~~~~~D~v~G~i~~~~~-~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~ 281 (571)
+|+|+|++... ...+.|.|.++|.+.+. ..+|.+ +|+|||||||+||||+||||||||+.||..+.+.|.+|++
T Consensus 190 ~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~----~iyPtYdFa~~vdD~l~gITHvlct~Ef~~r~~~y~wl~~ 265 (574)
T PTZ00437 190 ATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKW----CIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLE 265 (574)
T ss_pred eEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCce----EEEccCcccceeechhcCCCEEeeechhhcccHHHHHHHH
Confidence 69999998653 67788888888876654 445666 6799999999999999999999999999999999999999
Q ss_pred HhCCCCCcEEEeeeeecCCCCcccccCCC----------------CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCC
Q 008289 282 ALGFSMPYFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFT 345 (571)
Q Consensus 282 alg~~~P~f~H~pli~~~~g~KLSKR~g~----------------~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s 345 (571)
+|+|..|..+|.|. +|.+|+|||||+.. .+|..||++||+||||+||+..+||+..+ ..++
T Consensus 266 ~l~l~~p~~~ef~r-ln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~--~~i~ 342 (574)
T PTZ00437 266 ELNLWRPHVWEFSR-LNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSM--NVIQ 342 (574)
T ss_pred HhCCcccceEeeee-ecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccc--eEee
Confidence 99999999999999 69999999999976 58999999999999999999999997642 2334
Q ss_pred HHHHHHhcCcccc----ccCCCcccHHHHH
Q 008289 346 LKQLVEKFTIERV----NKSGAIFDSTKLR 371 (571)
Q Consensus 346 ~~eli~~F~~~~~----~~s~~~fd~~kL~ 371 (571)
++.+ +.++.+.+ ++-.++.|+.|+.
T Consensus 343 ~~~L-e~~nR~~ld~~a~R~~~V~dPv~v~ 371 (574)
T PTZ00437 343 ISML-ENTLREDLDERCERRLMVIDPIKVV 371 (574)
T ss_pred HHHH-HHHHHHHhcccCccceEEccceEEE
Confidence 4322 22222222 2234666666654
No 24
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=1.9e-70 Score=545.01 Aligned_cols=220 Identities=26% Similarity=0.424 Sum_probs=199.3
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccce
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy 134 (571)
+|+|||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|++||+||||+||+ ||
T Consensus 1 ~v~~RFAPsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~---------~~ 71 (238)
T cd00807 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYK---------VT 71 (238)
T ss_pred CceEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCC---------ce
Confidence 489999999999999999999999999999999999999999999999999999999999999999995 79
Q ss_pred eccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCC
Q 008289 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGG 214 (571)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~ 214 (571)
+||+|+++|++++++|+++|+||+ +|+ .|
T Consensus 72 ~QS~r~~~Y~~~~~~L~~~g~aY~--------------------------~~~------------~~------------- 100 (238)
T cd00807 72 YASDYFDQLYEYAEQLIKKGKAYV--------------------------HHR------------TG------------- 100 (238)
T ss_pred ecccCHHHHHHHHHHHHHcCCeec--------------------------CCC------------CC-------------
Confidence 999999999999999999999997 011 01
Q ss_pred ceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEee
Q 008289 215 SLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVS 294 (571)
Q Consensus 215 ~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~p 294 (571)
+++++ +|||||||||||++|||||||||+||++|||+|++||++|||+.|.+.|+.
T Consensus 101 -------------------~~~~i-----~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~ 156 (238)
T cd00807 101 -------------------DKWCI-----YPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFS 156 (238)
T ss_pred -------------------CCEEE-----EeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCCCCCceeEEE
Confidence 13333 499999999999999999999999999999999999999999999755554
Q ss_pred eeecCCCCcccccCCCC----------------chHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCcccc
Q 008289 295 LILAPDRSKLSKRHGAT----------------SVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERV 358 (571)
Q Consensus 295 li~~~~g~KLSKR~g~~----------------~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~ 358 (571)
.+ |.+|+|||||+++. ++..|+++|++||||+||+++|||
T Consensus 157 hl-n~~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~----------------------- 212 (238)
T cd00807 157 RL-NLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGV----------------------- 212 (238)
T ss_pred EE-CCCCCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCC-----------------------
Confidence 43 88999999999642 578999999999999999999997
Q ss_pred ccCCCcccHHHHHHhhHHHHhcCC
Q 008289 359 NKSGAIFDSTKLRWMNGQHLRAIP 382 (571)
Q Consensus 359 ~~s~~~fd~~kL~wlN~~~ir~l~ 382 (571)
++++++||++||.|+|++||....
T Consensus 213 s~~~~~~~~~~l~~~nr~~id~~~ 236 (238)
T cd00807 213 SKADSTIDWDKLEACVRKDLNPTA 236 (238)
T ss_pred CCCCcccCHHHHHHHHHHHhccCC
Confidence 567889999999999999998654
No 25
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=5.8e-67 Score=521.68 Aligned_cols=220 Identities=35% Similarity=0.609 Sum_probs=200.0
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCccc--CcHHHHHHHHHHHHHcCCCCCCCCCCCCCcc
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLER--STKESEEAVLQDLSWLGLDWDEGPGVGGDYG 132 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R--~~~~~~~~i~~~L~wlGl~~Degp~~~g~~g 132 (571)
+|||||||||||+|||||+||||+||++||++||+|+|||||||++| +.+++++.|++||+||||+||+
T Consensus 1 ~v~~RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~--------- 71 (240)
T cd09287 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDE--------- 71 (240)
T ss_pred CceEeCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCC---------
Confidence 48999999999999999999999999999999999999999999999 9999999999999999999996
Q ss_pred ceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCC
Q 008289 133 PYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPK 212 (571)
Q Consensus 133 py~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~ 212 (571)
+|+||+|+++|++++++|+++|+||+ .+.
T Consensus 72 ~~~qS~r~~~y~~~~~~Li~~G~aY~---------------------------------------------------~~~ 100 (240)
T cd09287 72 VVIASDRIELYYEYARKLIEMGGAYV---------------------------------------------------HPR 100 (240)
T ss_pred ccchhccHHHHHHHHHHHHHcCCccc---------------------------------------------------Ccc
Confidence 68999999999999999999999997 000
Q ss_pred CCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEE
Q 008289 213 GGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAH 292 (571)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H 292 (571)
.-+|||+ +||||||+||||++|||||||||+||++|||+|++||++||++.|.|+|
T Consensus 101 -------------------~~~~~~i-----~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H 156 (240)
T cd09287 101 -------------------TGSKYRV-----WPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIH 156 (240)
T ss_pred -------------------cCCcEEE-----EEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCCCCCcEEe
Confidence 0145666 3999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCcccccCCC----------------CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCcc
Q 008289 293 VSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIE 356 (571)
Q Consensus 293 ~pli~~~~g~KLSKR~g~----------------~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~ 356 (571)
+|+|++ +|+|||||++. .++..||++||+|+||+||+..|||+.
T Consensus 157 ~pll~~-~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~------------------- 216 (240)
T cd09287 157 WGRLKI-EGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQ------------------- 216 (240)
T ss_pred eeeecC-CCCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCC-------------------
Confidence 999876 57999999942 579999999999999999999999953
Q ss_pred ccccCCCcccHHHHHHhhHHHHhcCC
Q 008289 357 RVNKSGAIFDSTKLRWMNGQHLRAIP 382 (571)
Q Consensus 357 ~~~~s~~~fd~~kL~wlN~~~ir~l~ 382 (571)
++..+++++|..+|+++|....
T Consensus 217 ----~~~~~~~~~l~~~~r~~l~~~~ 238 (240)
T cd09287 217 ----TDATISWENLYAINRKLIDPRA 238 (240)
T ss_pred ----CCCccCHHHHHHHHHHHhccCC
Confidence 4556788888999998887543
No 26
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-45 Score=388.15 Aligned_cols=284 Identities=26% Similarity=0.392 Sum_probs=244.1
Q ss_pred cCCCCCCCCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCC
Q 008289 46 STNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGP 125 (571)
Q Consensus 46 ~~~~~~~~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp 125 (571)
-++|++..|+|+|||+|+|+||||||||++||+|+.||..++|+.|+|+|||+|+.+.+++++.|++||..|||++|.
T Consensus 191 v~lP~ae~GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~-- 268 (712)
T KOG1147|consen 191 VDLPGAEMGKVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDR-- 268 (712)
T ss_pred ccCCccccCceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCcce--
Confidence 357888889999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHH---HHHHHhcCC
Q 008289 126 GVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAE---VQKELERGT 202 (571)
Q Consensus 126 ~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e---~~~~~~~g~ 202 (571)
.-+.|++++...+|+.+||++|+||....+.|.+...|+ .| -+.+||+.+.|| ++++|.+|.
T Consensus 269 -------~TyTSDyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~----~g----v~Sk~R~~~vEenl~iw~EM~kGs 333 (712)
T KOG1147|consen 269 -------VTYTSDYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDERE----QG----VESKCRSNSVEENLRIWEEMKKGS 333 (712)
T ss_pred -------eeechhhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHh----cc----ccccccCCCHHHHHHHHHHHhccc
Confidence 468999999999999999999999988877777665553 22 345799999887 456777775
Q ss_pred CceEEEecCCCCceEEEeeccceeecc--CCCCCCeEEEecC-------C-----ccccchhhhHhhhcCCCcEEEeCCC
Q 008289 203 PYTYRFRVPKGGSLKISDLIRGEVSWN--LDTLGDFVIMRSN-------G-----QPVYNFCVTVDDATMAISHVIRAEE 268 (571)
Q Consensus 203 ~~~iR~k~~~~~~~~~~D~v~G~i~~~--~~~~~D~Vl~Rsd-------G-----~PtY~fA~vVDD~~m~ItHVIRG~D 268 (571)
+. .....||++|.+. +..+.|+||.|++ | ||||+|||.|-|.++||||.+|..|
T Consensus 334 ~~------------Gl~~CvRaKIdm~s~NkaMRDPviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttE 401 (712)
T KOG1147|consen 334 EK------------GLKCCVRAKIDMSSPNKAMRDPVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTE 401 (712)
T ss_pred hh------------hhhhheeeeecccCCCccccCCeeEecCCCCCCcCCCceeeecccccccccchhhhhhhhhhhhhh
Confidence 42 1223456666554 3489999999996 3 7999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCCcccccCC----------------CCchHHHHHCCCCHHHHHHHHHH
Q 008289 269 HLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHG----------------ATSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 269 hl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g----------------~~~v~~~r~~G~~Peai~n~l~~ 332 (571)
++..-+...++.+|||+..|..+.++. +|-..+.||||+- .++|+..+++|.+-|++.+|+..
T Consensus 402 YhDRn~Qyyw~i~al~LRkp~iwefsR-lN~~nTvLSKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~ 480 (712)
T KOG1147|consen 402 YHDRNAQYYWFIDALGLRKPHIWEFSR-LNFVNTVLSKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILA 480 (712)
T ss_pred ccccchHHHHHHHHhcCCccceeehhh-hhhHhhhhhhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHH
Confidence 999999999999999999999999998 4777889999983 26899999999999999999988
Q ss_pred hCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHhhHHHHhcCC
Q 008289 333 LGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIP 382 (571)
Q Consensus 333 lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wlN~~~ir~l~ 382 (571)
-|-| ++-..++++|++.+|++-|.-..
T Consensus 481 QG~S-----------------------k~v~~meWdkiWAfNKKvIDPVa 507 (712)
T KOG1147|consen 481 QGPS-----------------------KNVVTMEWDKIWAFNKKVIDPVA 507 (712)
T ss_pred hCCc-----------------------cceeeeehHhhhhhcccccCCCC
Confidence 7753 34455788999999998886543
No 27
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-45 Score=394.16 Aligned_cols=307 Identities=22% Similarity=0.364 Sum_probs=244.7
Q ss_pred CCCCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q 008289 51 KVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGD 130 (571)
Q Consensus 51 ~~~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~ 130 (571)
..+|+|+|||+|.|+|+||||||.+..+||.|||.+||.+.||+|||+|+.+.++|.++|.++.+|||+++
T Consensus 244 ~TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P--------- 314 (764)
T KOG1148|consen 244 RTGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEP--------- 314 (764)
T ss_pred hhCCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCc---------
Confidence 35789999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred ccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHH---HHHHhcCC----C
Q 008289 131 YGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEV---QKELERGT----P 203 (571)
Q Consensus 131 ~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~---~~~~~~g~----~ 203 (571)
|...+.|+.++...++|.+||++|+||.|+|+.|||++.| |.... ...||+.+.||. .+.|.+|. .
T Consensus 315 ~kvTysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~r------g~~~~-~spwRdRPieEsL~lF~~Mr~Gk~~eGe 387 (764)
T KOG1148|consen 315 YKVTYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERR------GFNER-LSPWRDRPIEESLRLFEDMRDGKYEEGE 387 (764)
T ss_pred eeeecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhc------CCCCC-CCccccCcHHHHHHHHHHHhcCCcCcCh
Confidence 3356889999988899999999999999999999998876 22221 345788888874 45566663 3
Q ss_pred ceEEEecCCC-CceEEEeeccceeeccCC--CCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHH
Q 008289 204 YTYRFRVPKG-GSLKISDLIRGEVSWNLD--TLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIY 280 (571)
Q Consensus 204 ~~iR~k~~~~-~~~~~~D~v~G~i~~~~~--~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~ 280 (571)
.++|+|+..+ +....-|+|.-+|.+.+. .=+++.| ||||+|++|+.|.++.|||.+|..|+.++..-.-||.
T Consensus 388 AtLRmK~dl~~~~p~m~DlvayRik~~pHpRtg~kwcI-----YPTYDythCl~DSlEnITHSlCT~EF~~rR~SY~WLc 462 (764)
T KOG1148|consen 388 ATLRMKQDLESGNPQMWDLVAYRIKNVPHPRTGDKWCI-----YPTYDYTHCLVDSLENITHSLCTKEFQTRRSSYYWLC 462 (764)
T ss_pred hheeeeeeccCCCccccccceeeeecCCCCCCCCceEE-----ecccchhhhehhhhhhhhhHHHHHHHHHhhhhHHHHH
Confidence 5788887543 333334444444433221 1122333 6999999999999999999999999999999999999
Q ss_pred HHhCCCCCcEEEeeeeecCCCCcccccCCC----------------CchHHHHHCCCCHHHHHHHHHHhCCCCCCCc-cc
Q 008289 281 KALGFSMPYFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPQAMVNYLALLGWGDGTEN-EF 343 (571)
Q Consensus 281 ~alg~~~P~f~H~pli~~~~g~KLSKR~g~----------------~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~-e~ 343 (571)
.+|+...|..+.++. +|..++.||||+-. .++..+|++|++|+||.||++.||.+..+.. +.
T Consensus 463 naL~iY~P~qwEYgR-LNv~~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a~~~i~v 541 (764)
T KOG1148|consen 463 NALEIYCPVQWEYGR-LNVTYTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTAQTTIDV 541 (764)
T ss_pred hhhhcccchhhhhce-eeeeeeeeehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCcceeeceecH
Confidence 999999999999999 58899999999832 5789999999999999999999999754321 22
Q ss_pred CCHHHHHHhcCccccccCCCcccHHHHHHhhHHHHhcCChhH
Q 008289 344 FTLKQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRAIPSNE 385 (571)
Q Consensus 344 ~s~~eli~~F~~~~~~~s~~~fd~~kL~wlN~~~ir~l~~~~ 385 (571)
--++..++.+--......+++.|+-|+. |.+++++.
T Consensus 542 ~~lE~~VRd~Ln~tapR~M~VleplkVt------i~N~~~~~ 577 (764)
T KOG1148|consen 542 ARLEAAVRDYLNDTAPRLMFVLEPLKVT------IENLSDDY 577 (764)
T ss_pred HHHHHHHHHHHhccCcceEEeecceEEE------EecCCcch
Confidence 2233444444333445567899999987 67777663
No 28
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=1.2e-25 Score=248.37 Aligned_cols=426 Identities=16% Similarity=0.148 Sum_probs=250.7
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcccCc--------------------------
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLERST-------------------------- 103 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDTD~~R~~-------------------------- 103 (571)
.+++-=+++|+|.+||||++..+..+.++|. +.-.||.=-||.|+-|.+
T Consensus 24 ~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G 103 (510)
T PRK00750 24 PVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFG 103 (510)
T ss_pred cEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCC
Confidence 3777778899999999999999888777775 446688888999874443
Q ss_pred ------HHHHHHHHHHHHHcCCCCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHh
Q 008289 104 ------KESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKL 175 (571)
Q Consensus 104 ------~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~ 175 (571)
+.+.+.+.+.|+.+||++|- |++++ +...|.+.+...+++-..- .+-|...+.....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~gi~~d~----------~~~t~~y~~g~~~~~i~~~l~~~~~i-----~~il~~~~~~~~~ 168 (510)
T PRK00750 104 CHESYAEHFNAPLREFLDRFGIEYEF----------ISATECYKSGRYDEAILTALENRDEI-----MEILLPYLGEERQ 168 (510)
T ss_pred CchHHHHHHHHHHHHHHHHcCCceEE----------EehhhhhccCchHHHHHHHHHhHHHH-----HHHHHHhcCCccC
Confidence 34567778899999999883 67776 5556777776666542211 1222222211001
Q ss_pred CCCCC--CCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeec--cceeeccCCCCCCeEEEecCCccccchhh
Q 008289 176 KQLPP--VYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLI--RGEVSWNLDTLGDFVIMRSNGQPVYNFCV 251 (571)
Q Consensus 176 ~~~~~--~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v--~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~ 251 (571)
..-.| +++..|..... ..++-+.. +.++|+|.|-- .|++.+.... --.-||-|- |
T Consensus 169 ~~~~P~~pic~~cg~~~~-----------~~~~~~d~-~~~~v~y~~~cG~~~~~~~~~g~--~KL~Wr~dW-~------ 227 (510)
T PRK00750 169 ATYSPFLPICPKCGKVLT-----------TPVISYDA-EAGTVTYDCECGHEGEVPVTGGH--GKLQWKVDW-P------ 227 (510)
T ss_pred CCeeeeeeeCCCCCccce-----------EEEEEEeC-CCCEEEEEcCCCCEEEEecCCCC--cccCCCCCc-H------
Confidence 11001 23344533211 01111111 11334443310 1111111000 011122221 1
Q ss_pred hHhhhcCCCcEEEeCCCCCC-CHHHHHHHHH-HhCCCCCcEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHH
Q 008289 252 TVDDATMAISHVIRAEEHLP-NTLRQALIYK-ALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVN 328 (571)
Q Consensus 252 vVDD~~m~ItHVIRG~Dhl~-ntp~q~~l~~-alg~~~P~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n 328 (571)
--=...||+..+.|.||.. +......+.+ .||+++|...|++++++.+|+||||++|+ +++.++.+. +.|++++-
T Consensus 228 -~rW~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~-~~pd~lR~ 305 (510)
T PRK00750 228 -MRWAALGVDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGNVITIEDWLEY-APPESLRL 305 (510)
T ss_pred -HHHHHcCCCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCCccCHHHHHHH-CCHHHHHH
Confidence 1123468999999999999 9999999998 99999999999999998889999999998 788888776 89999998
Q ss_pred HHHHhCCCCCCCcccCC-HHHHHHhcC-ccccccCCCcccHHHHHHhhH-HHHh-----cCChhHHHHHHHHHHHHcCCC
Q 008289 329 YLALLGWGDGTENEFFT-LKQLVEKFT-IERVNKSGAIFDSTKLRWMNG-QHLR-----AIPSNELTKLIGERWKSTGIL 400 (571)
Q Consensus 329 ~l~~lG~~~~~~~e~~s-~~eli~~F~-~~~~~~s~~~fd~~kL~wlN~-~~ir-----~l~~~~l~~~~~~~~~~~~~~ 400 (571)
|+..-.- + ..+-.|+ +..+.+.|+ +.+.-...-.-+.++ .-.|. .+|. .++...|+.++. +.
T Consensus 306 ~l~~~~~-~-~~~~~f~~l~~~~dey~rl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~l~~l~~-------i~ 375 (510)
T PRK00750 306 FMFARPK-P-AKRLDFDVIPKLVDEYDRFERKYFGQEEKKEEE-ELANPVYHIHNGNPLPVPFRLLLNLAQ-------IA 375 (510)
T ss_pred HHHhCCC-C-CCCCcccHHHHHHHHHHHHHHHHhccccccchh-hhhCceEEccCCCCCCCCHHHHHHHHH-------hc
Confidence 8764221 1 1112233 233333221 000000000000000 00000 0111 122222332211 11
Q ss_pred CCCCchhHHHHHHHHhccc-----cchhhHHHHHHhhhcCCcccCCCchhchhhccccHHHHHHHHHHHHcCCchhhhhh
Q 008289 401 TESKGPFVDEAIQLLKDGI-----DLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDNLSEVAAHLLAAYDGGELLAALE 475 (571)
Q Consensus 401 ~~~~~~~l~~~~~l~k~r~-----~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evl~~lL~~L~~~~~~~~~~ 475 (571)
...+.+-+.+++.-+.+.. +++.++.+.+.++|..+. ..+..++.+.+...+++..+.+.|+... ..
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~el~~~A~~~~~d~~----~~~~~~k~~~~~~~~~L~~l~~~L~~l~----~~ 447 (510)
T PRK00750 376 NAEDKEVLWGFLKRYAPGATPETHPRLDRLVEYAINWYRDFV----APEKKYRAPTEKERAALEDLDDALRELA----DG 447 (510)
T ss_pred CCCCHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHhcC----CHHHHhhcCCHhHHHHHHHHHHHHHhCc----cc
Confidence 1112222333322221122 568888888888776421 1222344444445566666766665421 02
Q ss_pred hchHhHHHHHHHHH-HHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHhHHhHHhhhhhhc
Q 008289 476 EGHAGWQKWVKGFG-KTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVSPRA 536 (571)
Q Consensus 476 ~~~e~i~~~ik~i~-k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLGke~~l~Rl~~~~ 536 (571)
++.+++++.+++++ +++|+|+|++|+|||+||||+.+||+|+++|++||++++++||+.++
T Consensus 448 ~~~e~i~~~i~~va~~~~gik~k~~f~pLR~aLtG~~~GP~L~~~i~lLGke~vl~RL~~al 509 (510)
T PRK00750 448 ADAEEIQNEIYEVAKKELGVNPRDWFKALYEVLLGQSQGPRLGSFIALLGIDFVIALIREAL 509 (510)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHh
Confidence 57899999999999 99999999999999999999999999999999999999999999865
No 29
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.90 E-value=1e-23 Score=208.53 Aligned_cols=180 Identities=24% Similarity=0.328 Sum_probs=144.1
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc------------cCcHHHHHHHHHHHHHcCCCCCC
Q 008289 61 APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLE------------RSTKESEEAVLQDLSWLGLDWDE 123 (571)
Q Consensus 61 APSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDTD~~------------R~~~~~~~~i~~~L~wlGl~~De 123 (571)
.|.|||.+||||+|++++-..+||- +...++--++|.+.+ .....+.+.+.+++++||+.+|.
T Consensus 8 spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~d~ 87 (212)
T cd00671 8 SANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRFDV 87 (212)
T ss_pred CCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCce
Confidence 5899999999999999876666653 445555566677663 23567778999999999999997
Q ss_pred CCCCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCC
Q 008289 124 GPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTP 203 (571)
Q Consensus 124 gp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~ 203 (571)
- ++-|+......++++.|+++|.+|. ++ |.
T Consensus 88 ~---------~~es~~~~~~~~~i~~L~~~g~~~~-----------------------~~-----------------g~- 117 (212)
T cd00671 88 W---------FGESSYLGLMGKVVELLEELGLLYE-----------------------ED-----------------GA- 117 (212)
T ss_pred e---------cchhhhhhHHHHHHHHHHHCCCEEE-----------------------eC-----------------Cc-
Confidence 4 3566668888999999999999983 11 10
Q ss_pred ceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccc---hhhhHhhhcCCCcEE--EeCCCCCCCHHHHHH
Q 008289 204 YTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYN---FCVTVDDATMAISHV--IRAEEHLPNTLRQAL 278 (571)
Q Consensus 204 ~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~---fA~vVDD~~m~ItHV--IRG~Dhl~ntp~q~~ 278 (571)
.. +.+.. | ....|+||+||||.|||+ +|+++|++.+++||| |+|+||..++++|..
T Consensus 118 ~~--~~~~~-----~------------~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~ 178 (212)
T cd00671 118 LW--LDLTE-----F------------GDDKDRVLVRSDGTYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFA 178 (212)
T ss_pred EE--Eechh-----h------------CCCCCeEEEECCCCccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHH
Confidence 00 11110 0 134799999999999999 799999999999999 899999999999999
Q ss_pred HHHHhCCC-CCcEEEe--eeeecCCCCcccccCC
Q 008289 279 IYKALGFS-MPYFAHV--SLILAPDRSKLSKRHG 309 (571)
Q Consensus 279 l~~alg~~-~P~f~H~--pli~~~~g~KLSKR~g 309 (571)
++++||+. .|.+.|+ ++|.+++|+|||||+|
T Consensus 179 ~~~~lg~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 179 ALELLGYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred HHHHcCCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 99999997 7889998 7999888999999986
No 30
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.88 E-value=3.3e-20 Score=204.45 Aligned_cols=417 Identities=18% Similarity=0.241 Sum_probs=222.1
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcccCcHH------------------------
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLERSTKE------------------------ 105 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDTD~~R~~~~------------------------ 105 (571)
++++-=+-+|+|.+||||++..+..+.++|. +.-+||.=-||-|+-|.++.
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~ 98 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK 98 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence 5666667789999999999998887777765 55778888899988776543
Q ss_pred ------HHHHHHHHHHHcCCCCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCC
Q 008289 106 ------SEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQ 177 (571)
Q Consensus 106 ------~~~~i~~~L~wlGl~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~ 177 (571)
+...+.++|+-||++++ .++||| +...|.+.+...+++ ++++.+.=..-..+.
T Consensus 99 ~s~~~h~~~~~~~~l~~~gi~~e----------~~s~te~Y~sG~~~~~i~~~L~~---------~~~I~~il~~~~~~~ 159 (515)
T TIGR00467 99 TSYAEHFLIPFLESLPVLGINPE----------FIRASKQYTSGLYASQIKIALDH---------RKEISEILNEYRTSK 159 (515)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEE----------EEEHHHhhhcCChHHHHHHHHHh---------HHHHHHHHHHhcCCc
Confidence 44556677777888654 467776 333566666666653 233332211111111
Q ss_pred CCC------CCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeeccc--eeeccCCCCCCeEEEecCCccccch
Q 008289 178 LPP------VYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRG--EVSWNLDTLGDFVIMRSNGQPVYNF 249 (571)
Q Consensus 178 ~~~------~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G--~i~~~~~~~~D~Vl~RsdG~PtY~f 249 (571)
.+. +++..|..... .+.+ . +... +|+++. +.|.-...|+-.| +..|. -|- |.
T Consensus 160 ~~~~~~P~~pic~~cGrv~~-~~~~-~-~~~~-~v~Y~c-~cG~~g~~~~~~g~~KL~Wk-----------vdW-~~--- 219 (515)
T TIGR00467 160 LEENWYPISVFCENCGRDTT-TVNN-Y-DNEY-SIEYSC-ECGNQESVDIYTGAIKLPWR-----------VDW-PA--- 219 (515)
T ss_pred cCCCceeeeeecCCcCccCc-eEEE-e-cCCc-eEEEEc-CCCCEEEEeecCCCcccCCC-----------CCc-Hh---
Confidence 111 23445544321 1100 0 1111 344432 1233222333222 22222 221 11
Q ss_pred hhhHhhhcCCCcEEEeCCCCCCCH---HHHHHHH-HHhCCCCCcEEEeeee-ecCCCCcccccCCC-CchHHHHHCCCCH
Q 008289 250 CVTVDDATMAISHVIRAEEHLPNT---LRQALIY-KALGFSMPYFAHVSLI-LAPDRSKLSKRHGA-TSVGQFREMGYLP 323 (571)
Q Consensus 250 A~vVDD~~m~ItHVIRG~Dhl~nt---p~q~~l~-~alg~~~P~f~H~pli-~~~~g~KLSKR~g~-~~v~~~r~~G~~P 323 (571)
-=...||+-=--|.||..+. .....+. ++||..+|...-+.++ ++.+|.|||||.|+ ++++++.+. +.|
T Consensus 220 ----RW~~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~L~~~g~KMSKS~Gn~itl~dll~~-~~p 294 (515)
T TIGR00467 220 ----RWKIEKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWISLKGKGGKMSSSKGDVISVKDVLEV-YTP 294 (515)
T ss_pred ----hHhhhCcccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEEEcCCCccccCCCCCCccHHHHHHH-cCH
Confidence 00123455445688998733 2223333 6999888864444444 56678899999998 799998887 899
Q ss_pred HHHHHHHHHhCCCCCCCcccCCHHHH--HHhcC-ccc-cccCCCcccHHHHHHhhH-HHHhc----------CChhHHHH
Q 008289 324 QAMVNYLALLGWGDGTENEFFTLKQL--VEKFT-IER-VNKSGAIFDSTKLRWMNG-QHLRA----------IPSNELTK 388 (571)
Q Consensus 324 eai~n~l~~lG~~~~~~~e~~s~~el--i~~F~-~~~-~~~s~~~fd~~kL~wlN~-~~ir~----------l~~~~l~~ 388 (571)
++++-|+..-.. ...-.|+.+.+ .+.|+ +.+ ....-..-+.++-. .|. .+|.. ++...|+.
T Consensus 295 dalR~~~l~~~~---~~~ldFd~~~l~~~dey~r~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~f~~l~~ 370 (515)
T TIGR00467 295 EITRFLFARTKP---EFHISFDLDVIKLYEDYDKFERFYYGVKDKDEEKKRA-FKRIYELSQPMPSERIPYQVPFRHLSV 370 (515)
T ss_pred HHHHHHHhccCC---CCCCcCCHHHHHHHHHHHHHHHHHHhhhcccchhhhh-cCceEEeecCCCCCCCCCCCCHHHHHH
Confidence 999887543222 22344554422 11111 000 00000000000000 000 00110 11111111
Q ss_pred HHHHHHHHcCCCCCCCchhHHHHHHHHhc---cc-----cchhhHHHHHHhhhcCCccc----CCCc-hhchhhccccHH
Q 008289 389 LIGERWKSTGILTESKGPFVDEAIQLLKD---GI-----DLVPDSDKALSNLLSYPLRD----TLTS-SEGKSIVEDNLS 455 (571)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~l~~~~~l~k~---r~-----~~l~d~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~ 455 (571)
++. +....+ .+.++..++. .+ ..+.+..+.+...+....++ .+.+ .+..+.+.+...
T Consensus 371 l~~-------i~~~~d---~~~~~~~l~~~~~~~~~~~~~~l~~~~~~A~~w~~~~~~~~~~~~~~~~~~~~k~l~~~~~ 440 (515)
T TIGR00467 371 ISQ-------IFENND---IEKILEILKRVQYTVDDQKDKLINKRLNCARNWIRKYAPEDFKFSLRSKFDNMEILEENSK 440 (515)
T ss_pred HHH-------hcCCCC---HHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHhCChhhhhhhhcchhhhhcCCHHHH
Confidence 110 000001 1222222222 11 01222222222222111100 1111 111233444556
Q ss_pred HHHHHHHHHHcCCchhhhhhhchHhHHHHHHHHHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHhHHhHHhhhhhh
Q 008289 456 EVAAHLLAAYDGGELLAALEEGHAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVSPR 535 (571)
Q Consensus 456 evl~~lL~~L~~~~~~~~~~~~~e~i~~~ik~i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLGke~~l~Rl~~~ 535 (571)
+.+..+.+.|++. .++.+++++.++++++++|+|+|++|||||+||||+.+||+|+++|++||+|++++||+.+
T Consensus 441 ~~L~~L~~~L~~~------~~~~e~Iq~~i~~vak~~gik~k~~F~~LR~aLtG~~~GP~L~~~i~lLGke~tl~RI~~a 514 (515)
T TIGR00467 441 KAINELAEFLKKN------FEVATEIHNLIYKISKENGIEPALAFQAIYKILLGKEYGPKLGGFIKILGIDRVEKRTSKY 514 (515)
T ss_pred HHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHhh
Confidence 6777777777652 2467899999999999999999999999999999999999999999999999999999876
No 31
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.85 E-value=1.1e-20 Score=209.34 Aligned_cols=242 Identities=24% Similarity=0.343 Sum_probs=178.1
Q ss_pred CCceEEEe-CCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEE---EecCCCc-------------ccCcHHHHHHHHHH
Q 008289 53 DGQVRVRF-APSPTGNLHVGGARTALFNYLFARS--KGGKFVL---RIEDTDL-------------ERSTKESEEAVLQD 113 (571)
Q Consensus 53 ~~~vr~RF-APSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiL---RieDTD~-------------~R~~~~~~~~i~~~ 113 (571)
+.+|.+-| .|+|||++||||+|++++...+||- ..|.-+. -++|.+. ++..+.+.+.+.++
T Consensus 110 ~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (507)
T PRK01611 110 GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKED 189 (507)
T ss_pred CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999 8899999999999999999888885 4555555 4588874 34567888999999
Q ss_pred HHHcCCCCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCH
Q 008289 114 LSWLGLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATD 191 (571)
Q Consensus 114 L~wlGl~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~ 191 (571)
|++||+.+|.- ++.|+ +.+.+.++.++|.++|.+|.= ++
T Consensus 190 l~~LgI~~D~~---------~~es~~~~~~~~~~~~~~L~~~G~~y~~----------------------~~-------- 230 (507)
T PRK01611 190 LDRLGVHFDVW---------FSESELYYNGKVDEVVEDLKEKGLLYVE----------------------SD-------- 230 (507)
T ss_pred HHHcCCeeeEE---------eecCcchhcchHHHHHHHHHHCCCEEEe----------------------eC--------
Confidence 99999999863 23343 345789999999999999920 01
Q ss_pred HHHHHHHhcCCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccc---hhhhHhhhcCCCcEE--EeC
Q 008289 192 AEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYN---FCVTVDDATMAISHV--IRA 266 (571)
Q Consensus 192 ~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~---fA~vVDD~~m~ItHV--IRG 266 (571)
|. .. |++.. | | .-.|+||+||||.|||. +|...+-+.. .+++ |.|
T Consensus 231 ---------Ga-~~--~~~~~-----~-----~-------~~~~~vl~ksdG~~~Y~t~Dia~~~~k~~~-~d~~i~V~g 280 (507)
T PRK01611 231 ---------GA-LW--VRLTE-----F-----G-------DDKDRVLIKSDGTYTYFTRDIAYHLYKFER-FDRVIYVVG 280 (507)
T ss_pred ---------Cc-EE--EEchh-----h-----C-------CCCCeEEEECCCCccchHHHHHHHHHHHhh-cCEEEEEEC
Confidence 11 01 11111 1 1 01489999999999997 7777766655 6788 579
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCc---EEE--eeeeecCCCCcccccCCC-CchHHHHHCCC--CHHHHHHH--HHHhCCC
Q 008289 267 EEHLPNTLRQALIYKALGFSMPY---FAH--VSLILAPDRSKLSKRHGA-TSVGQFREMGY--LPQAMVNY--LALLGWG 336 (571)
Q Consensus 267 ~Dhl~ntp~q~~l~~alg~~~P~---f~H--~pli~~~~g~KLSKR~g~-~~v~~~r~~G~--~Peai~n~--l~~lG~~ 336 (571)
.||....+++..+.++||+.++. +.| ++++++.+|+|||||+|+ +++.++.++++ ..+.+.+- -..+|.
T Consensus 281 ~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgi- 359 (507)
T PRK01611 281 ADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGI- 359 (507)
T ss_pred CChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhcc-
Confidence 99999999999999999987553 788 568889999999999997 78888877632 22222111 001222
Q ss_pred CCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHhhH
Q 008289 337 DGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMNG 375 (571)
Q Consensus 337 ~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wlN~ 375 (571)
+.+++|.++.-..++..||++++..+++
T Consensus 360 -----------dAiR~~~L~~~~~~~~~Fd~~~~~~~~~ 387 (507)
T PRK01611 360 -----------DAVRYFDLSRSRDKDLDFDLDLALSFEG 387 (507)
T ss_pred -----------ceeEehhhhcCCCCCCccCHHHHHhhcC
Confidence 4467888888778899999999887765
No 32
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.85 E-value=5.9e-20 Score=201.39 Aligned_cols=227 Identities=23% Similarity=0.346 Sum_probs=165.1
Q ss_pred CceEEE-eCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCccc---C----------cHHHHHHHHHHH
Q 008289 54 GQVRVR-FAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLER---S----------TKESEEAVLQDL 114 (571)
Q Consensus 54 ~~vr~R-FAPSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDTD~~R---~----------~~~~~~~i~~~L 114 (571)
+.|++. ..|+|+|++||||+|++++..+++|. ++..|+..|+|+|.+- . ...+++.+.+++
T Consensus 22 ~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~ 101 (463)
T PRK00260 22 GKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDM 101 (463)
T ss_pred CcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 455555 68999999999999999999999987 7789999999999852 1 578999999999
Q ss_pred HHcCC-CCCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhCCCCCCCCCcCCC
Q 008289 115 SWLGL-DWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPPVYTGKWAT 188 (571)
Q Consensus 115 ~wlGl-~~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ 188 (571)
++||+ .+|.. .+.|++.+.+.+++++|+++|+||. .||... -+.| |...+
T Consensus 102 ~~Lgi~~~d~~---------~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~--------------~~~y-g~ls~ 157 (463)
T PRK00260 102 DALNVLPPDIE---------PRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRK--------------FPDY-GKLSG 157 (463)
T ss_pred HHcCCCCCCcc---------ccccccHHHHHHHHHHHHHCCCEEEecCeEEEeccc--------------cccc-ccCCC
Confidence 99999 56653 3678999999999999999999995 455332 1234 33333
Q ss_pred CCHHHHHHHHhcCCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEec-------------CCccccchhh-hHh
Q 008289 189 ATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCV-TVD 254 (571)
Q Consensus 189 l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rs-------------dG~PtY~fA~-vVD 254 (571)
.+.++. ..|. | ++ ..-...+..||+|||. .|.|.||..| +.-
T Consensus 158 ~~~~~~----~~~~----~--~~--------------~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~ 213 (463)
T PRK00260 158 RNLDEL----QAGA----R--VE--------------VAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMS 213 (463)
T ss_pred CCHHHH----hccC----c--CC--------------cccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHH
Confidence 333332 2332 1 11 0111235689999996 3789999998 555
Q ss_pred hhcCCCcEEEe--CCC----CCCCHHHHHHHHHHhCCCCC-cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHH
Q 008289 255 DATMAISHVIR--AEE----HLPNTLRQALIYKALGFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAM 326 (571)
Q Consensus 255 D~~m~ItHVIR--G~D----hl~ntp~q~~l~~alg~~~P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai 326 (571)
....|.+--|+ |.| |+.|.-.|.. .++|.+.+ .+.|..++ +.+|+||||+.|+ +++.++.+. |.|+++
T Consensus 214 ~~~lg~~~Dih~gG~DlifpHh~neiaqs~--a~~g~p~~~~w~H~g~v-~~~G~KMSKS~GN~i~~~dll~~-~~~d~l 289 (463)
T PRK00260 214 TKYLGETFDIHGGGADLIFPHHENEIAQSE--AATGKPFANYWMHNGFV-TVNGEKMSKSLGNFFTIRDLLKK-YDPEVL 289 (463)
T ss_pred HHhcCCCcceecCccccCCCchHhHHHHHH--HhcCCCcceEEEEccEE-ccCCCcccCcCCCCCCHHHHHHH-cCchHh
Confidence 55666666665 888 7776655542 23563333 45677774 6899999999998 789998885 999999
Q ss_pred HHHHHH
Q 008289 327 VNYLAL 332 (571)
Q Consensus 327 ~n~l~~ 332 (571)
+-|+..
T Consensus 290 R~~ll~ 295 (463)
T PRK00260 290 RFFLLS 295 (463)
T ss_pred HHHHHh
Confidence 998875
No 33
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.83 E-value=9.9e-20 Score=199.53 Aligned_cols=225 Identities=24% Similarity=0.296 Sum_probs=157.3
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHH-----HcCCeEEEEecCCCccc---C----------cHHHHHHHHHHHHHcCCCC
Q 008289 60 FAPSPTGNLHVGGARTALFNYLFAR-----SKGGKFVLRIEDTDLER---S----------TKESEEAVLQDLSWLGLDW 121 (571)
Q Consensus 60 FAPSPtG~LHiG~~rtAl~n~l~Ar-----~~~G~fiLRieDTD~~R---~----------~~~~~~~i~~~L~wlGl~~ 121 (571)
-.|+|+|++||||+|+++....++| .++..|+..++|+|.+- . .+.+.+.+.+++++||+.+
T Consensus 27 cgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~LgI~~ 106 (465)
T TIGR00435 27 CGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVLP 106 (465)
T ss_pred ecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3578889999999999999999998 67899999999999852 1 3688999999999999998
Q ss_pred CCCCCCCCCccceeccccHHHHHHHHHHHHHcCCcccc------cCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHH
Q 008289 122 DEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRC------FCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQ 195 (571)
Q Consensus 122 Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~C------fcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~ 195 (571)
|.- ..+.|++.+.+.+++++|+++|+||.+ ||..+ -+.| |++.+...++
T Consensus 107 d~~--------~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~--------------~~~y-G~ls~~~~~~-- 161 (465)
T TIGR00435 107 PDL--------EPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSK--------------FKDY-GKLSKQDLDQ-- 161 (465)
T ss_pred CcC--------CccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccc--------------cchh-ccCCCCCHHH--
Confidence 862 127889999999999999999999963 33221 1223 4444333333
Q ss_pred HHHhcCCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEec-------------CCccccchhhhHh-hhcCCCc
Q 008289 196 KELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTVD-DATMAIS 261 (571)
Q Consensus 196 ~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rs-------------dG~PtY~fA~vVD-D~~m~It 261 (571)
+..|.. ..+ .-...+..||+|||+ .|.|.||+.|++- -...|.+
T Consensus 162 --~~~~~~----~~~----------------~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~ 219 (465)
T TIGR00435 162 --LEAGAR----VDV----------------DEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQ 219 (465)
T ss_pred --Hhcccc----cCc----------------ccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCC
Confidence 223321 000 001235689999985 3789999988732 2223322
Q ss_pred EEE--eCCCC----CCCHHHHHHHHHHhCCCCCcE-EEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHh
Q 008289 262 HVI--RAEEH----LPNTLRQALIYKALGFSMPYF-AHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALL 333 (571)
Q Consensus 262 HVI--RG~Dh----l~ntp~q~~l~~alg~~~P~f-~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~l 333 (571)
--| =|.|| +.|...|... +.|.+.+.+ .|..+ ++.+|+|||||.|+ +++.++.+. |.|++++-|+..-
T Consensus 220 ~Dih~gG~Dl~fpHhene~aqs~a--~~g~~~~~~~~h~g~-v~~~g~KMSKS~GN~i~~~dll~~-~~~dalR~~ll~~ 295 (465)
T TIGR00435 220 IDIHGGGVDLIFPHHENEIAQSEA--AFGKQLAKYWMHNGF-LMIDNEKMSKSLGNFFTVRDVLKN-YDPEILRYFLLSV 295 (465)
T ss_pred ceeeccccccccchHHHHHHHHHH--hcCCCCCcEEEEeeE-EEecCccccccCCCcCCHHHHHHH-CCHHHHHHHHHhC
Confidence 222 26665 4444444421 357555554 68777 46899999999998 789999886 9999999998754
Q ss_pred CC
Q 008289 334 GW 335 (571)
Q Consensus 334 G~ 335 (571)
.+
T Consensus 296 ~~ 297 (465)
T TIGR00435 296 HY 297 (465)
T ss_pred CC
Confidence 43
No 34
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.79 E-value=2.1e-18 Score=188.21 Aligned_cols=240 Identities=20% Similarity=0.238 Sum_probs=167.8
Q ss_pred EEEeCCCCC--CcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCC----------Ccc-------------cCcHHH
Q 008289 57 RVRFAPSPT--GNLHVGGARTALFNYLFARS-----KGGKFVLRIEDT----------DLE-------------RSTKES 106 (571)
Q Consensus 57 r~RFAPSPt--G~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDT----------D~~-------------R~~~~~ 106 (571)
+.=|.+.|| .++||||+||+++..+++|. +...|+..|.|+ |++ --...+
T Consensus 22 v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~~ 101 (481)
T PRK14534 22 VKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFF 101 (481)
T ss_pred eEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHHH
Confidence 344665555 99999999999987777764 557899999999 663 114688
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhCCCCCC
Q 008289 107 EEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPPV 181 (571)
Q Consensus 107 ~~~i~~~L~wlGl~~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~~ 181 (571)
.+.++++++.||+.++. |.| +.|++++...+++++|+++|+||. +||..+ -+.
T Consensus 102 ~~~f~~d~~~Lni~~~~-------~~p-~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~--------------~~~ 159 (481)
T PRK14534 102 TEAFFDDCKKLNIVYPD-------KVL-VASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC--------------FKS 159 (481)
T ss_pred HHHHHHHHHHcCCCCCc-------eec-CccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc--------------ccc
Confidence 89999999999999875 346 678999999999999999999995 444332 123
Q ss_pred CCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEec----------------CCcc
Q 008289 182 YTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS----------------NGQP 245 (571)
Q Consensus 182 Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rs----------------dG~P 245 (571)
| |...+.+.++... ..|. |+.+. -...+..||+|||. .|+|
T Consensus 160 Y-G~ls~~~l~~l~~--~~~~----~v~~~----------------~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrP 216 (481)
T PRK14534 160 Y-GQMAGINLNDFKD--MSVS----RVEID----------------KSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYP 216 (481)
T ss_pred h-hhhcCCCHHHHhh--hccC----cCCcc----------------cCCCCcccchhcCcCCcCCCCCCeecCCCCCcCC
Confidence 4 2223333333211 0222 11110 01235688999873 2789
Q ss_pred ccchhhh----------HhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcE-EEeeeeecCCCCcccccCCC-Cch
Q 008289 246 VYNFCVT----------VDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYF-AHVSLILAPDRSKLSKRHGA-TSV 313 (571)
Q Consensus 246 tY~fA~v----------VDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f-~H~pli~~~~g~KLSKR~g~-~~v 313 (571)
.||..|+ +|-|..|+.|+.- |+.|.+.|.. .+.|.+.+.| .|..++ ..+|+|||||.|+ +++
T Consensus 217 gWHiECsam~~~~lg~~~DIH~GG~DliFP---HHene~Aqs~--a~~g~~~~~~W~H~g~l-~~~g~KMSKSlGN~i~l 290 (481)
T PRK14534 217 SWHLECAAMNLEYFKSTLDIHLGGVDHIGV---HHINEIAIAE--CYLNKKWCDMFVHGEFL-IMEYEKMSKSNNNFITI 290 (481)
T ss_pred cHHHHHHHHHHHHcCCcceEEecccccCCC---cchhHHHHHh--hhcCCCcceEEEEecEE-EecCceecccCCCcccH
Confidence 9999997 5677777777764 7788888873 2247766654 577775 5689999999998 899
Q ss_pred HHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHH
Q 008289 314 GQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLV 350 (571)
Q Consensus 314 ~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli 350 (571)
+++.++|+.|++++-|+..-.+.. .-.||.+.|.
T Consensus 291 ~dll~~~~~~~alR~~lls~~yr~---~l~Fs~e~l~ 324 (481)
T PRK14534 291 KDLEDQGFSPLDFRYFCLTAHYRT---QLKFTFNNLK 324 (481)
T ss_pred HHHHhcCCChhHHHHHHHhCCCCC---CCCCCHHHHH
Confidence 999999999999999876544432 2345555443
No 35
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.79 E-value=2.6e-18 Score=188.19 Aligned_cols=235 Identities=21% Similarity=0.290 Sum_probs=165.4
Q ss_pred CCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCC----------Cccc-------------CcHHHHHHHHHH
Q 008289 62 PSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDT----------DLER-------------STKESEEAVLQD 113 (571)
Q Consensus 62 PSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDT----------D~~R-------------~~~~~~~~i~~~ 113 (571)
|++++++||||+|+++...+++|. +...|+..|.|+ |++- -...+.+.++++
T Consensus 31 pTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~~~~~f~~d 110 (490)
T PRK14536 31 PTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFRD 110 (490)
T ss_pred CccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 556699999999999987777763 557899999999 6641 146788999999
Q ss_pred HHHcCCCCCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhCCCCCCCCCcCCC
Q 008289 114 LSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPPVYTGKWAT 188 (571)
Q Consensus 114 L~wlGl~~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ 188 (571)
++.||+.++. |.| +.+++++...+++++|+++|+||. +||... -+.| |...+
T Consensus 111 ~~~Lni~~~~-------~~~-rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~--------------~~~Y-G~Ls~ 167 (490)
T PRK14536 111 TARLNIERPS-------IVC-NATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT--------------FPSY-GSLAS 167 (490)
T ss_pred HHHcCCCCCc-------eec-CcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc--------------ccch-hhhcC
Confidence 9999998764 234 679999999999999999999996 555421 1223 33444
Q ss_pred CCHHHHHHHHhcCCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEec----------------CCccccchhhh
Q 008289 189 ATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS----------------NGQPVYNFCVT 252 (571)
Q Consensus 189 l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rs----------------dG~PtY~fA~v 252 (571)
.+.++. ..|.. ++. .-...+..||+|||. .|.|.||..|+
T Consensus 168 ~~~~~l----~~g~~------v~~--------------~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECs 223 (490)
T PRK14536 168 AAVEDL----QAGAR------IEH--------------DTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECS 223 (490)
T ss_pred CCHHHh----hcCCc------CCC--------------CCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHH
Confidence 444442 23321 110 001235678999863 27899999887
Q ss_pred H----------hhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcE-EEeeeeecCCCCcccccCCC-CchHHHHHCC
Q 008289 253 V----------DDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYF-AHVSLILAPDRSKLSKRHGA-TSVGQFREMG 320 (571)
Q Consensus 253 V----------DD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f-~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G 320 (571)
+ |-|..|+.+++- |+.|.+.|..- +.|.+.+.| .|..+ +..+|+|||||.|+ ++++++.+.|
T Consensus 224 aMs~~~lg~~~DIH~GG~DliFP---HHeneiAqs~a--~~g~~~~~~w~h~g~-l~~~g~KMSKSlGN~itl~dll~~g 297 (490)
T PRK14536 224 AMSMKYLGEQCDIHIGGVDHIRV---HHTNEIAQCEA--ATGKPWVRYWLHHEF-LLMNKGKMSKSAGQFLTLSSLQEKG 297 (490)
T ss_pred HHHHHHcCCceeEEeccccCCCc---chhhHHHHHHH--hcCCCcceEEEEcCE-EeecCccccccCCCcccHHHHHhcC
Confidence 4 556666666653 67778777632 246665655 56666 56789999999998 8999999999
Q ss_pred CCHHHHHHHHHHhCCCCCCCcccCCHHHHHHh
Q 008289 321 YLPQAMVNYLALLGWGDGTENEFFTLKQLVEK 352 (571)
Q Consensus 321 ~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~ 352 (571)
|.|++++-|+..-.+.. .-.||.+.+.+.
T Consensus 298 ~~~~alR~~lls~~yr~---~l~Fs~e~l~~a 326 (490)
T PRK14536 298 FQPLDYRFFLLGGHYRS---QLAFSWEALKTA 326 (490)
T ss_pred CCHHHHHHHHHhCCCCC---CCCCCHHHHHHH
Confidence 99999999887655532 345666665543
No 36
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.1e-18 Score=187.34 Aligned_cols=232 Identities=25% Similarity=0.311 Sum_probs=160.5
Q ss_pred EEEeCCCCC--CcCchhhHHHHHHHHHHHHH---cC--CeEEEEecCCCcc---cC----------cHHHHHHHHHHHHH
Q 008289 57 RVRFAPSPT--GNLHVGGARTALFNYLFARS---KG--GKFVLRIEDTDLE---RS----------TKESEEAVLQDLSW 116 (571)
Q Consensus 57 r~RFAPSPt--G~LHiG~~rtAl~n~l~Ar~---~~--G~fiLRieDTD~~---R~----------~~~~~~~i~~~L~w 116 (571)
+.-|...|| .+.||||+||+++-.++.|- .| .+|+..|.|+|.+ |. .+.|+++.++|++.
T Consensus 23 V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~a 102 (464)
T COG0215 23 VKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDA 102 (464)
T ss_pred EEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 455665555 99999999999976665552 33 5799999999986 22 46789999999999
Q ss_pred cCCC-CCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCC-CHHHH
Q 008289 117 LGLD-WDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATA-TDAEV 194 (571)
Q Consensus 117 lGl~-~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l-~~~e~ 194 (571)
||+. +|..| +.|++++...+++++|+++|+||.--- ....- .-...+.| |.+.+. +.++
T Consensus 103 L~v~~p~~~P---------raTe~I~~iI~~I~~LiekG~AY~~~~--G~VYF------dv~~f~~Y-G~LS~~~~le~- 163 (464)
T COG0215 103 LNVLPPDIEP---------RATEHIDEIIEFIEKLIEKGYAYVADD--GDVYF------DVSKFKDY-GKLSGRDSLEE- 163 (464)
T ss_pred hCCCCCcccC---------cHhhCHHHHHHHHHHHHHCCceEEecC--CcEEE------ecccchhh-HhhcCCCChhH-
Confidence 9995 67654 899999999999999999999996310 00000 00001122 223222 2222
Q ss_pred HHHHhcCCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEec-------------CCccccchhhhH--------
Q 008289 195 QKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTV-------- 253 (571)
Q Consensus 195 ~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rs-------------dG~PtY~fA~vV-------- 253 (571)
+..|. |. .+.-...+..||||||+ -|.|.||..|++
T Consensus 164 ---l~~ga----r~----------------~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~ 220 (464)
T COG0215 164 ---LQAGA----RV----------------EVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGE 220 (464)
T ss_pred ---Hhhcc----cc----------------ccccccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCC
Confidence 22332 11 11111336689999996 379999998864
Q ss_pred --hhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCC-C-cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHH
Q 008289 254 --DDATMAISHVIRAEEHLPNTLRQALIYKALGFSM-P-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVN 328 (571)
Q Consensus 254 --DD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~-P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n 328 (571)
|-|--|+.+++- |+.|.-.|.. .+.|-++ - .|.|..+ ++.+|+||||+.|+ ++|+++.+. |.|++|+.
T Consensus 221 ~~DIHgGG~DLiFP---HHENEiAQse--a~~g~~~~a~yWmH~G~-l~i~geKMSKSLGNfiti~d~l~~-~~p~~lR~ 293 (464)
T COG0215 221 TFDIHGGGSDLIFP---HHENEIAQSE--AATGVKPFAKYWMHNGF-LNIDGEKMSKSLGNFITVRDLLKK-YDPEVLRL 293 (464)
T ss_pred CcceecCcccccCC---CcccHHHHHH--hhhCCCcceeEeEEcce-eeecCcCcccccCCeeEHHHHHhh-cCHHHHHH
Confidence 556666666653 7778876652 2445232 3 4678888 47899999999998 899999888 99999999
Q ss_pred HHHHhCCCC
Q 008289 329 YLALLGWGD 337 (571)
Q Consensus 329 ~l~~lG~~~ 337 (571)
||..-.+..
T Consensus 294 ~lls~HYR~ 302 (464)
T COG0215 294 FLLSSHYRS 302 (464)
T ss_pred HHHHHHhCC
Confidence 998877754
No 37
>PLN02946 cysteine-tRNA ligase
Probab=99.77 E-value=2.4e-18 Score=190.43 Aligned_cols=221 Identities=22% Similarity=0.277 Sum_probs=158.0
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCccc-------------CcHHHHHHHHHHHHHcCCCCC
Q 008289 61 APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLER-------------STKESEEAVLQDLSWLGLDWD 122 (571)
Q Consensus 61 APSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDTD~~R-------------~~~~~~~~i~~~L~wlGl~~D 122 (571)
-|++.|++||||+|+++...+++|. +...|+..|+|+|.+= -...|.+.+.++++.||+...
T Consensus 87 GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p 166 (557)
T PLN02946 87 GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPP 166 (557)
T ss_pred CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 4666699999999999988777773 5678999999999751 146889999999999999733
Q ss_pred CCCCCCCCccceeccccHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHH
Q 008289 123 EGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKE 197 (571)
Q Consensus 123 egp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~ 197 (571)
.. --+.|++++...+++++|+++|+||. +||... -+.| |+..+.+.++
T Consensus 167 ~~--------~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~--------------f~~Y-G~Ls~~~l~~---- 219 (557)
T PLN02946 167 SV--------EPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK--------------FPEY-GKLSGRKLED---- 219 (557)
T ss_pred Ce--------ecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc--------------chhh-hhcCCCChhH----
Confidence 21 23788999999999999999999995 444321 1123 3333333332
Q ss_pred HhcCCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEec-------------CCccccchhhh----------Hh
Q 008289 198 LERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVT----------VD 254 (571)
Q Consensus 198 ~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rs-------------dG~PtY~fA~v----------VD 254 (571)
+..|.. +. +.-...+..||+|||. .|.|.||..|+ +|
T Consensus 220 l~~g~r------v~--------------~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~D 279 (557)
T PLN02946 220 NRAGER------VA--------------VDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFD 279 (557)
T ss_pred hhcCCC------CC--------------cccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCee
Confidence 223331 10 0111236689999995 48899999997 56
Q ss_pred hhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCC-cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHH
Q 008289 255 DATMAISHVIRAEEHLPNTLRQALIYKALGFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 255 D~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~ 332 (571)
-|--|+.|++- |+.|.-.|..- +.|...- .|.|..+|. .+|+|||||.|+ ++++++.+. |.|++++-|+..
T Consensus 280 IH~GG~DL~FP---HHENEiAQsea--~~g~~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~dll~~-y~~dalR~~lLs 352 (557)
T PLN02946 280 IHGGGMDLVFP---HHENEIAQSCA--ACCDSNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQVIDL-YHPLALRLFLLG 352 (557)
T ss_pred EeccccccCCC---cccchHHHHHH--HhCCCCCceeeEeeEEE-eCCCCcCCcCCCcCCHHHHHHh-cCccceeeeeec
Confidence 66677777764 77787777632 2454322 568999875 799999999998 789998886 889888888865
Q ss_pred hCC
Q 008289 333 LGW 335 (571)
Q Consensus 333 lG~ 335 (571)
-++
T Consensus 353 ~hy 355 (557)
T PLN02946 353 THY 355 (557)
T ss_pred cCC
Confidence 444
No 38
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.76 E-value=7e-18 Score=179.96 Aligned_cols=233 Identities=19% Similarity=0.159 Sum_probs=155.1
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCccc-------------CcHHHHHHHHHHHHHcCC-CC
Q 008289 61 APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLER-------------STKESEEAVLQDLSWLGL-DW 121 (571)
Q Consensus 61 APSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDTD~~R-------------~~~~~~~~i~~~L~wlGl-~~ 121 (571)
.|+|.|++||||+|+++...+++|. +...|+..|+|.|.+= -.+.+.+.+.++++.||+ .+
T Consensus 16 GpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~~ 95 (384)
T PRK12418 16 GITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALRVLPP 95 (384)
T ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4667799999999999988777774 4578999999999851 146788999999999997 66
Q ss_pred CCCCCCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCH-HHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhc
Q 008289 122 DEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSN-EELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELER 200 (571)
Q Consensus 122 Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~-eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~ 200 (571)
|-- ++.|+.++..++++++|+++|+||.---.. ..+-- .-...+.| |...+.+.++....+
T Consensus 96 ~~~---------~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYF------dv~~~~~Y-G~ls~~~~~~~~~~~-- 157 (384)
T PRK12418 96 RDY---------VGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYF------SVDATPQF-GYESGYDRATMLELF-- 157 (384)
T ss_pred Ccc---------ccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEE------ecCchhhc-ccccCCCHHHHHhhh--
Confidence 653 488999999999999999999999511000 00000 00001223 333444444432100
Q ss_pred CCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEec-------------CCccccchhhh----------Hhhhc
Q 008289 201 GTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVT----------VDDAT 257 (571)
Q Consensus 201 g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rs-------------dG~PtY~fA~v----------VDD~~ 257 (571)
+. | . +... .-...+..||+|||+ .|.|.||..|+ +|-|.
T Consensus 158 ~~----~--~-----~~~~-------~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~ 219 (384)
T PRK12418 158 AE----R--G-----GDPD-------RPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQG 219 (384)
T ss_pred cc----c--c-----cCcc-------cccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCccccc
Confidence 11 0 0 0000 001236689999996 48899999886 45566
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHhCC-CCCcE-EEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhC
Q 008289 258 MAISHVIRAEEHLPNTLRQALIYKALGF-SMPYF-AHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLG 334 (571)
Q Consensus 258 m~ItHVIRG~Dhl~ntp~q~~l~~alg~-~~P~f-~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG 334 (571)
-|+.++.. |+.|.-.|.. .++|- +.+.+ .|..+ ++.+|+||||+.|+ +++.++.+.|+.|++++-|+..-.
T Consensus 220 GG~DL~FP---HHeneiaq~~--a~~g~~~~~~~w~H~g~-l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~ 293 (384)
T PRK12418 220 GGSDLIFP---HHEFSAAHAE--AATGERRFARHYVHAGM-IGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGH 293 (384)
T ss_pred Cccccccc---hhHhHHHHHH--HhcCCCCcceEEEECCE-ECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccC
Confidence 66666653 6666666652 22454 34444 56555 68899999999998 889999888999999998885333
Q ss_pred C
Q 008289 335 W 335 (571)
Q Consensus 335 ~ 335 (571)
+
T Consensus 294 y 294 (384)
T PRK12418 294 Y 294 (384)
T ss_pred C
Confidence 3
No 39
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.73 E-value=9e-17 Score=179.56 Aligned_cols=222 Identities=22% Similarity=0.297 Sum_probs=160.6
Q ss_pred eCCCCC--CcCchhhHHHHHHHHHHHH-----HcCCeEEEEecCCCcccC-------------cHHHHHHHHHHHHHcCC
Q 008289 60 FAPSPT--GNLHVGGARTALFNYLFAR-----SKGGKFVLRIEDTDLERS-------------TKESEEAVLQDLSWLGL 119 (571)
Q Consensus 60 FAPSPt--G~LHiG~~rtAl~n~l~Ar-----~~~G~fiLRieDTD~~R~-------------~~~~~~~i~~~L~wlGl 119 (571)
|.+.|| +++||||+|++++..+++| .+...|+..|+|.|.+=. ...+.+.+.++++.||+
T Consensus 252 YvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI 331 (699)
T PRK14535 252 YVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGV 331 (699)
T ss_pred EecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 665555 9999999999998877777 355789999999998511 36888999999999999
Q ss_pred CCCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCccc------ccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHH
Q 008289 120 DWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR------CFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAE 193 (571)
Q Consensus 120 ~~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~------Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e 193 (571)
..+. +.| +.|++++...+++++|+++|+||. +||..+ -+.| |...+.+.++
T Consensus 332 ~~p~-------~~p-raTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~--------------f~~Y-G~LS~~~~~~ 388 (699)
T PRK14535 332 LRPD-------IEP-KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE--------------FAAY-GQLSGKSLDD 388 (699)
T ss_pred CCCc-------Eee-CccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc--------------cccc-ccccCCChHH
Confidence 8775 223 678999999999999999999994 355331 1234 3333334333
Q ss_pred HHHHHhcCCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEec-------------CCccccchhhh--------
Q 008289 194 VQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVT-------- 252 (571)
Q Consensus 194 ~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rs-------------dG~PtY~fA~v-------- 252 (571)
+..|.. ..+ .-...+..||+|||+ .|.|.||..|+
T Consensus 389 ----l~~g~r----ve~----------------d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG 444 (699)
T PRK14535 389 ----LRAGER----VEV----------------DGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFG 444 (699)
T ss_pred ----hcCCCc----ccc----------------ccccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcC
Confidence 223321 000 001235689999995 38899999886
Q ss_pred --HhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCC------------C-----CcEEEeeeeecCCCCcccccCCC-Cc
Q 008289 253 --VDDATMAISHVIRAEEHLPNTLRQALIYKALGFS------------M-----PYFAHVSLILAPDRSKLSKRHGA-TS 312 (571)
Q Consensus 253 --VDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~------------~-----P~f~H~pli~~~~g~KLSKR~g~-~~ 312 (571)
+|-|.-|+.|++- |+.|.-.|..- +.|.. . ..|.|..++. .+|+||||+.|+ ++
T Consensus 445 ~~~DIHgGG~DLiFP---HHENEiAQseA--~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~-vdGeKMSKSLGN~it 518 (699)
T PRK14535 445 DTFDIHGGGADLQFP---HHENEIAQSVG--ATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIR-VDGEKMSKSLGNFFT 518 (699)
T ss_pred CcceeECCccccCCC---CCccHHHHHHH--hhCCCcccccccccccccccccccEEEECCeEe-eCCCccCCCCCCcCC
Confidence 4677777777774 78888777632 23431 1 1578999875 799999999998 78
Q ss_pred hHHHHHCCCCHHHHHHHHHHhCC
Q 008289 313 VGQFREMGYLPQAMVNYLALLGW 335 (571)
Q Consensus 313 v~~~r~~G~~Peai~n~l~~lG~ 335 (571)
+.++.+. |.|++++-|+..-.+
T Consensus 519 ~~dlLe~-ygpdalRl~lLsshY 540 (699)
T PRK14535 519 IREVLKQ-YDPEVVRFFILRAHY 540 (699)
T ss_pred HHHHHHh-CCHHHHHHHHHcCCC
Confidence 9998885 999999999976444
No 40
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.73 E-value=5.4e-18 Score=174.10 Aligned_cols=240 Identities=22% Similarity=0.296 Sum_probs=142.8
Q ss_pred CCCCCcCchhhHHHHHHHHHHHH-----HcCCeEEEEecCCCcc---cC----------cHHHHHHHHHHHHHcCCCCCC
Q 008289 62 PSPTGNLHVGGARTALFNYLFAR-----SKGGKFVLRIEDTDLE---RS----------TKESEEAVLQDLSWLGLDWDE 123 (571)
Q Consensus 62 PSPtG~LHiG~~rtAl~n~l~Ar-----~~~G~fiLRieDTD~~---R~----------~~~~~~~i~~~L~wlGl~~De 123 (571)
|++..+.||||+||+++-.++.| .+..+++..|.|+|.+ |. ...|++.+++||+.||+....
T Consensus 16 PTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p~ 95 (300)
T PF01406_consen 16 PTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPPD 95 (300)
T ss_dssp EBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----S
T ss_pred CCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 56669999999999997655554 4667899999999975 11 468899999999999998643
Q ss_pred CCCCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCC
Q 008289 124 GPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTP 203 (571)
Q Consensus 124 gp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~ 203 (571)
- .-+.||.++...+++++|+++|+||.--- ..+- -.-...+.| |...+.+.+++ ..|..
T Consensus 96 ~--------~prate~i~~ii~~i~~Li~~G~AY~~~~--g~VY------Fdv~~~~~Y-G~Ls~~~~~~l----~~~~~ 154 (300)
T PF01406_consen 96 H--------YPRATEHIPEIIELIEKLIDKGHAYESED--GSVY------FDVSKFPDY-GKLSNQDLEDL----EAGAR 154 (300)
T ss_dssp E--------EEEGGGGHHHHHHHHHHHHHTTSEEEETT--SEEE------E-CCGSTTT-TTTTT-SHHHH----HHCHH
T ss_pred c--------ccchhccHHHHHHHHHHHHHCCCeEEcCC--CcEE------Eeecccccc-ccccccchhhH----Hhhhh
Confidence 2 24899999999999999999999996310 0000 000001223 23333344332 22210
Q ss_pred ceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEec-------------CCccccchhhhH-hhhcCCCcEEE--eCC
Q 008289 204 YTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTV-DDATMAISHVI--RAE 267 (571)
Q Consensus 204 ~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rs-------------dG~PtY~fA~vV-DD~~m~ItHVI--RG~ 267 (571)
..+.-...+..||+|||. .|.|.||..|++ -....|-+--| -|.
T Consensus 155 --------------------~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~ 214 (300)
T PF01406_consen 155 --------------------VEVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGI 214 (300)
T ss_dssp --------------------HTT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEG
T ss_pred --------------------cccccccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEcccc
Confidence 011112236689999996 378999998864 23333444444 388
Q ss_pred CCCCCHHHH---HHHHHHh-CCCCC-cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCc
Q 008289 268 EHLPNTLRQ---ALIYKAL-GFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTEN 341 (571)
Q Consensus 268 Dhl~ntp~q---~~l~~al-g~~~P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~ 341 (571)
|++- |.| ++..+|+ |-+.. .|.|..+| +.+|+||||+.|+ ++|+++.+. |.|++++-||..-.+..+
T Consensus 215 DL~F--PHHENEiAqs~a~~g~~~a~~W~H~g~l-~~~g~KMSKSlgN~~~i~dll~~-~~~~~lR~~~l~~hYr~~--- 287 (300)
T PF01406_consen 215 DLIF--PHHENEIAQSEAATGKPFANYWMHNGHL-NVDGEKMSKSLGNFITIRDLLKK-YSPDALRLFLLSTHYRKP--- 287 (300)
T ss_dssp GGTT--THHHHHHHHHHHHHSS-SEEEEEEE--E-EETTCE--TTTT---BHHHHHTT-S-HHHHHHHHHTS-TTS----
T ss_pred ccCC--CCccchHHHHHHhhCchHHHHHHHHHHH-hhcCccccccCCCEEEHHHHhhc-CCHHHHHHHHhcCCCCCc---
Confidence 8774 555 3344544 63333 46788885 5699999999998 899999876 999999999977666532
Q ss_pred ccCCHHHH
Q 008289 342 EFFTLKQL 349 (571)
Q Consensus 342 e~~s~~el 349 (571)
-.||.+.|
T Consensus 288 l~~s~~~l 295 (300)
T PF01406_consen 288 LNFSEENL 295 (300)
T ss_dssp EEE-HHHH
T ss_pred cccCHHHH
Confidence 34554443
No 41
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.72 E-value=3.8e-17 Score=175.28 Aligned_cols=226 Identities=20% Similarity=0.195 Sum_probs=153.1
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHH-----HcCCeEEEEecCCCccc-------------CcHHHHHHHHHHHHHcCCC-C
Q 008289 61 APSPTGNLHVGGARTALFNYLFAR-----SKGGKFVLRIEDTDLER-------------STKESEEAVLQDLSWLGLD-W 121 (571)
Q Consensus 61 APSPtG~LHiG~~rtAl~n~l~Ar-----~~~G~fiLRieDTD~~R-------------~~~~~~~~i~~~L~wlGl~-~ 121 (571)
-|+|.+++||||+|+++...+++| .+...|+..|+|.|.+= -...+.+.+.++++.||+. +
T Consensus 43 GpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~ 122 (411)
T TIGR03447 43 GITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPP 122 (411)
T ss_pred CCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 456669999999999998888877 35677999999999851 1367889999999999976 6
Q ss_pred CCCCCCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCC--CCCCC--------CcCCCCCH
Q 008289 122 DEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQL--PPVYT--------GKWATATD 191 (571)
Q Consensus 122 Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~--~~~Y~--------g~cr~l~~ 191 (571)
|.- ++.|+..+...+++++|+++|+||.-- |. ...|. |...+.+.
T Consensus 123 d~~---------~RaTe~i~~ii~~i~~L~~kG~aY~~~----------------~~~~~~VYFdv~~~~~YG~Ls~~~~ 177 (411)
T TIGR03447 123 RDY---------IGAVESIDEVIEMVEKLLAAGAAYEVE----------------GPEYPDVYFSIEATEQFGYESGYDR 177 (411)
T ss_pred Ccc---------cCCCCCHHHHHHHHHHHHHCCCEEecC----------------CCCcCcEEEeccchhccccccCCCH
Confidence 653 488999999999999999999999411 10 01222 22233333
Q ss_pred HHHHHHHhcCCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEec-------------CCccccchhhhH-hhhc
Q 008289 192 AEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTV-DDAT 257 (571)
Q Consensus 192 ~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rs-------------dG~PtY~fA~vV-DD~~ 257 (571)
++...- .+. | .+... .....+..||+|||. .|.|.||..|++ -...
T Consensus 178 ~~~~~~--~~~----~-------~~~~~-------~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~ 237 (411)
T TIGR03447 178 ATMLEL--FAE----R-------GGDPD-------RPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNR 237 (411)
T ss_pred HHHHhh--hcc----c-------ccCcc-------cccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHH
Confidence 332210 011 0 00000 001235689999996 488999998864 3444
Q ss_pred CCCcEEEe--CCCCC----CCHHHHHHHHHH-hCC-CCCcE-EEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHH
Q 008289 258 MAISHVIR--AEEHL----PNTLRQALIYKA-LGF-SMPYF-AHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMV 327 (571)
Q Consensus 258 m~ItHVIR--G~Dhl----~ntp~q~~l~~a-lg~-~~P~f-~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~ 327 (571)
.|-+--|+ |.|++ .|.-.|. +| +|- +.+.+ .|..+ ++.+|+||||+.|+ +++.++.+.|+.|++++
T Consensus 238 lg~~~Dih~GG~DLifpHheneiaq~---~A~~g~~~~~~~w~H~g~-l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lR 313 (411)
T TIGR03447 238 LGAGFDIQGGGSDLIFPHHEFSAAHA---EAATGVRRMARHYVHAGM-IGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIR 313 (411)
T ss_pred cCCceecccCcccccccchHhHHHHH---HHhcCCCCcceEEEECCE-ECcCCCCccCcCCCCCCHHHHHhcCCCcccEE
Confidence 44455555 66655 3443333 33 455 44544 56665 68899999999998 78999988899999999
Q ss_pred HHHHHhCC
Q 008289 328 NYLALLGW 335 (571)
Q Consensus 328 n~l~~lG~ 335 (571)
-|++.-.+
T Consensus 314 l~lls~~Y 321 (411)
T TIGR03447 314 LGLLAGHY 321 (411)
T ss_pred EEEecCCC
Confidence 88854333
No 42
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.63 E-value=3.9e-16 Score=144.79 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=105.6
Q ss_pred EEeCCCCCCcCchhhHHHHHHHHHHHHHc-----CCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCcc
Q 008289 58 VRFAPSPTGNLHVGGARTALFNYLFARSK-----GGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYG 132 (571)
Q Consensus 58 ~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~-----~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~g 132 (571)
+...|+|||.+||||+|+++..+.++|.. +..++..++|.|..+..+.... |..|.+-
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~---------~~~~~~~-------- 64 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK---------GENAKAF-------- 64 (143)
T ss_pred EecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc---------CCCHHHH--------
Confidence 67889999999999999999999999886 8999999999997766555333 2332220
Q ss_pred ceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCC
Q 008289 133 PYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPK 212 (571)
Q Consensus 133 py~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~ 212 (571)
.+.+.+..++.++
T Consensus 65 -------~~~~~~~~~~~~~------------------------------------------------------------ 77 (143)
T cd00802 65 -------VERWIERIKEDVE------------------------------------------------------------ 77 (143)
T ss_pred -------HHHHHHHHHHHHH------------------------------------------------------------
Confidence 0111111111100
Q ss_pred CCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCC---cEEEeCCCCCCCHHHHHHHHHHhCCC-CC
Q 008289 213 GGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAI---SHVIRAEEHLPNTLRQALIYKALGFS-MP 288 (571)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~I---tHVIRG~Dhl~ntp~q~~l~~alg~~-~P 288 (571)
|++.+++|+...++ ||+++|.|+..+...+..+.+++|+. .|
T Consensus 78 ----------------------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p 123 (143)
T cd00802 78 ----------------------------------YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARP 123 (143)
T ss_pred ----------------------------------HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999 99999999999999999999999875 68
Q ss_pred cEEEeeeeecCCCCcccccC
Q 008289 289 YFAHVSLILAPDRSKLSKRH 308 (571)
Q Consensus 289 ~f~H~pli~~~~g~KLSKR~ 308 (571)
.+.|.++|...+|+|||||+
T Consensus 124 ~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 124 FGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred eEEEeCCeECCCCCcCCCCC
Confidence 99999999998889999985
No 43
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.58 E-value=2.3e-14 Score=162.72 Aligned_cols=246 Identities=21% Similarity=0.270 Sum_probs=157.0
Q ss_pred EEEeCCCCC--CcCchhhHHHHHHHHHHHHH------cCCeEEEEecCCCcc---c-----C------cHHHHHHHHHHH
Q 008289 57 RVRFAPSPT--GNLHVGGARTALFNYLFARS------KGGKFVLRIEDTDLE---R-----S------TKESEEAVLQDL 114 (571)
Q Consensus 57 r~RFAPSPt--G~LHiG~~rtAl~n~l~Ar~------~~G~fiLRieDTD~~---R-----~------~~~~~~~i~~~L 114 (571)
+.=|.+.|| ++.|||||||+++..+++|. +...|+..|+|+|.+ | . ...+++.+++|+
T Consensus 61 v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~d~ 140 (651)
T PTZ00399 61 VRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDM 140 (651)
T ss_pred eEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 344776666 99999999999987777762 447899999999986 1 1 257889999999
Q ss_pred HHcCCCCCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhCCCCCCCCCcCCCC
Q 008289 115 SWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPPVYTGKWATA 189 (571)
Q Consensus 115 ~wlGl~~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l 189 (571)
+.||+.++.- -| +.|++++...+++++|+++|+||. .|+...--+. ...| ..+
T Consensus 141 ~~Lni~~p~~-------~~-r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~----------~~~Y----g~L 198 (651)
T PTZ00399 141 KALNVRPPDV-------IT-RVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKA----------GHVY----PKL 198 (651)
T ss_pred HHcCCCCCcc-------cc-CcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccc----------hhhH----Hhh
Confidence 9999986642 13 569999999999999999999995 2322210000 0112 112
Q ss_pred CHHHH--HHHHhcCCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEec-------------CCccccchhhhH-
Q 008289 190 TDAEV--QKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTV- 253 (571)
Q Consensus 190 ~~~e~--~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rs-------------dG~PtY~fA~vV- 253 (571)
+++.. ...+..|. +.+ .| +.-...+..||+|||. .|.|.||..|.+
T Consensus 199 ~p~~~~~~~~~~~g~-----------~~l--~~-----~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam 260 (651)
T PTZ00399 199 EPESVADEDRIAEGE-----------GAL--GK-----VSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAM 260 (651)
T ss_pred ChhhcCCHHHHhccc-----------CCc--cc-----cCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHH
Confidence 22110 01111221 000 00 0001124468888875 388999996653
Q ss_pred h-hhcCCCcEEEe--CCC----CCCCHHHHHHHHHHhCC-CCC-cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCH
Q 008289 254 D-DATMAISHVIR--AEE----HLPNTLRQALIYKALGF-SMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLP 323 (571)
Q Consensus 254 D-D~~m~ItHVIR--G~D----hl~ntp~q~~l~~alg~-~~P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~P 323 (571)
- |++ |-+--|. |.| |+.|.-.|..- ++|- +.+ .|.|.++ ++.+|.||||+.|+ +++.++.+. |.|
T Consensus 261 ~~~~l-g~~~DIh~gG~DL~FPHHeNEiAQseA--~~~~~~~v~y~~H~G~-L~i~G~KMSKSLGNfItp~dlLek-yga 335 (651)
T PTZ00399 261 ASNIL-GDPIDIHSGGIDLKFPHHDNELAQSEA--YFDKHQWVNYFLHSGH-LHIKGLKMSKSLKNFITIRQALSK-YTA 335 (651)
T ss_pred HHHHc-CCcceeeccCCCCCCCcchhHHHHHHH--hhCCCCCCcEEEEEEE-EEeccchhhhcCCCcccHHHHHHH-cCh
Confidence 2 333 2233333 444 46666666532 2343 233 4678888 56799999999998 899999887 999
Q ss_pred HHHHHHHHHhCCCCCCCcccCCHHHHH
Q 008289 324 QAMVNYLALLGWGDGTENEFFTLKQLV 350 (571)
Q Consensus 324 eai~n~l~~lG~~~~~~~e~~s~~eli 350 (571)
++|+-|+..-.|.. .-.||.+.+.
T Consensus 336 DaLR~~lLs~~~~~---dldFS~e~l~ 359 (651)
T PTZ00399 336 RQIRLLFLLHKWDK---PMNYSDESMD 359 (651)
T ss_pred HHHHHHHHhcCCCC---CCccCHHHHH
Confidence 99999997655543 3456766654
No 44
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.51 E-value=2.1e-13 Score=151.13 Aligned_cols=259 Identities=18% Similarity=0.201 Sum_probs=153.2
Q ss_pred EeCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc-------------cCcHHHHHHHHHHHHHcCCC
Q 008289 59 RFAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLE-------------RSTKESEEAVLQDLSWLGLD 120 (571)
Q Consensus 59 RFAPSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDTD~~-------------R~~~~~~~~i~~~L~wlGl~ 120 (571)
==.|+|||.+||||+|+.+...+++|. +...|+.-+||.|.+ .....+.+.|.++|+.|||+
T Consensus 7 ~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~ 86 (511)
T PRK11893 7 TPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNIS 86 (511)
T ss_pred cCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 336899999999999999988888875 345577788887653 22467889999999999999
Q ss_pred CCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCccc----------c--cCCHHHHHHHHHHHHhCCCCCCCCCcC
Q 008289 121 WDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR----------C--FCSNEELEKMKEIAKLKQLPPVYTGKW 186 (571)
Q Consensus 121 ~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~----------C--fcs~eel~~~r~~~~~~~~~~~Y~g~c 186 (571)
+|.. ++.++ +.+..+++.++|.++|++|. | |++..+|.. + ..++-.|
T Consensus 87 ~D~~---------~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~--------~--~p~~~~~ 147 (511)
T PRK11893 87 YDDF---------IRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIE--------D--GYRCPPT 147 (511)
T ss_pred cCCc---------eeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcC--------C--CCCCCCC
Confidence 9963 34444 78899999999999999997 3 444444321 0 0122333
Q ss_pred CC-------------CCH--HHHHHHHhcCCCceEEEecCCCCceEEEeecccee-eccCCCCCCeEEEecCCc-----c
Q 008289 187 AT-------------ATD--AEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEV-SWNLDTLGDFVIMRSNGQ-----P 245 (571)
Q Consensus 187 r~-------------l~~--~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i-~~~~~~~~D~Vl~RsdG~-----P 245 (571)
.+ ++. +.+.+....+.. +. .| +..+.++ .+-...+.|+.|.|++.. |
T Consensus 148 ~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~---~~-~p--------~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP 215 (511)
T PRK11893 148 GAPVEWVEEESYFFRLSKYQDKLLELYEANPD---FI-QP--------ASRRNEVISFVKSGLKDLSISRTNFDWGIPVP 215 (511)
T ss_pred CCcceEEecCeEEEEcHHHHHHHHHHHHhCCC---cc-CC--------HHHHHHHHHHHHCCCCCcccCCCCCCCCccCC
Confidence 21 111 111111111100 00 01 0011110 111224678888883321 2
Q ss_pred cc------ch--------hhh------------HhhhcCCCcEEEeCCCCCCC-HHHHHHHHHHhCCCCCc-EEEeeeee
Q 008289 246 VY------NF--------CVT------------VDDATMAISHVIRAEEHLPN-TLRQALIYKALGFSMPY-FAHVSLIL 297 (571)
Q Consensus 246 tY------~f--------A~v------------VDD~~m~ItHVIRG~Dhl~n-tp~q~~l~~alg~~~P~-f~H~pli~ 297 (571)
.+ -+ +.. ...+. ..+-.+-|.|.+.. +--...+..++|.+.|. +.|+.+++
T Consensus 216 ~~~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~-~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~ 294 (511)
T PRK11893 216 GDPKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYW-PADVHLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLT 294 (511)
T ss_pred CCCCceEEEEecCcHHHHhHhccccccccchhHHHhcC-CCcceEecccccccchhHHHHHHHhCCCCCCCEEEeeccEE
Confidence 22 11 110 01111 11222347777642 11222333556777774 56778876
Q ss_pred cCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhc
Q 008289 298 APDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKF 353 (571)
Q Consensus 298 ~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F 353 (571)
. +|+|||||.|+ +++.++.+. |.+++++-||+..+- ...+-.|+.+.+.+.+
T Consensus 295 ~-~G~KMSKS~GN~i~~~dll~~-~g~DalR~~ll~~~~--~~~d~~Fs~~~~~~~~ 347 (511)
T PRK11893 295 L-DGEKMSKSLGNVIDPFDLVDE-YGVDAVRYFLLREIP--FGQDGDFSREAFINRI 347 (511)
T ss_pred E-CCeeecccCCcEEcHHHHHHH-cCcHHHHHHHHhcCC--CCcCCCCCHHHHHHHH
Confidence 5 89999999998 788888877 889999999987642 1233457777765433
No 45
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.5e-13 Score=153.59 Aligned_cols=139 Identities=16% Similarity=0.194 Sum_probs=99.6
Q ss_pred CCCCeEEEecCCcccc---chhhhHhhhcCCCcEEEe--CCCCCCCHHHHHHHHHHhCCCCCc--EEEe--eeeecCCCC
Q 008289 232 TLGDFVIMRSNGQPVY---NFCVTVDDATMAISHVIR--AEEHLPNTLRQALIYKALGFSMPY--FAHV--SLILAPDRS 302 (571)
Q Consensus 232 ~~~D~Vl~RsdG~PtY---~fA~vVDD~~m~ItHVIR--G~Dhl~ntp~q~~l~~alg~~~P~--f~H~--pli~~~~g~ 302 (571)
...|.||+||||.++| ++|+..+=+..+-+.+|- |.||...-++-..+.+++|+..+. ..|. .++.+.+|.
T Consensus 303 d~~~~vl~KSDGt~lY~t~DIAy~~~K~~~~~d~~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~ 382 (577)
T COG0018 303 DDKDRVLQKSDGTYLYFTRDIAYHLYKFERGFDKLIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGV 382 (577)
T ss_pred CCCCeEEEEcCCCeeeehhHHHHHHHHHhcCCCEEEEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCc
Confidence 4469999999999999 689998888889998885 999998776667777899998774 6675 577778899
Q ss_pred cccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCccc--CCHHHHHHhcCccccccCCCcccHHHHHHhhH
Q 008289 303 KLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEF--FTLKQLVEKFTIERVNKSGAIFDSTKLRWMNG 375 (571)
Q Consensus 303 KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~--~s~~eli~~F~~~~~~~s~~~fd~~kL~wlN~ 375 (571)
|||||.|. ++++++.+. +.-.-...+.-......++ .---+.+++|++++-..++.+||+++...+++
T Consensus 383 kmStR~G~~vtl~dllde-----~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfeg 453 (577)
T COG0018 383 KMSTRAGNVVTLDDLLDE-----AGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEG 453 (577)
T ss_pred cccccCCceEEHHHHHHH-----HHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccC
Confidence 99999997 788877543 1100000000000000000 00125678999999999999999999998887
No 46
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.48 E-value=1.2e-13 Score=155.16 Aligned_cols=136 Identities=17% Similarity=0.250 Sum_probs=92.3
Q ss_pred CCeEEEecCCccccc---hhhhHhhhcCCCcEEEe--CCCCCCCHHHHHHHHHHhCCCCC-cEEEeeeeecCCCCccccc
Q 008289 234 GDFVIMRSNGQPVYN---FCVTVDDATMAISHVIR--AEEHLPNTLRQALIYKALGFSMP-YFAHVSLILAPDRSKLSKR 307 (571)
Q Consensus 234 ~D~Vl~RsdG~PtY~---fA~vVDD~~m~ItHVIR--G~Dhl~ntp~q~~l~~alg~~~P-~f~H~pli~~~~g~KLSKR 307 (571)
.|.||+||||.+||- +|...+=...+.+++|- |.||....++-..+.++||++.| .+.|++..+- ++.|||||
T Consensus 298 ~~~vl~ksDGt~~Y~t~DiA~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V-~~~kmSkr 376 (566)
T TIGR00456 298 KDRVLQKSDGTYLYLTRDIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMV-PLGSMKTR 376 (566)
T ss_pred CCeEEEECCCCceechhhHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEE-ECCCCCcc
Confidence 489999999999994 66666655558899884 99999888888888899999877 5778776443 46799999
Q ss_pred CCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCccc---CCHHHHHHhcCccccccCCCcccHHHHHHhhH
Q 008289 308 HGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEF---FTLKQLVEKFTIERVNKSGAIFDSTKLRWMNG 375 (571)
Q Consensus 308 ~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~---~s~~eli~~F~~~~~~~s~~~fd~~kL~wlN~ 375 (571)
.|+ +++.++.++. -+...+.+..-+-. ...++ +. .+.+++|.+++...+...||++++..+|+
T Consensus 377 ~Gn~V~~~dll~~~--~~ra~~~i~~~~~~--~~~~~~~~vg-~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~ 443 (566)
T TIGR00456 377 RGNVISLDNLLDEA--SKRAGNVITIKNDL--EEEDVADAVG-IGAVRYFDLSQNRETHYVFDWDAMLSFEG 443 (566)
T ss_pred CCceeeHHHHHHHH--HHHHHHHHHhcCCc--cHHHHHHHhc-ccceeeHHhhcCCCCCceecHHHHhccCC
Confidence 997 6666654331 11222222211110 00000 00 03467888888888999999998766554
No 47
>PLN02286 arginine-tRNA ligase
Probab=99.47 E-value=1.9e-13 Score=153.79 Aligned_cols=136 Identities=14% Similarity=0.094 Sum_probs=95.4
Q ss_pred CCeEEEecCCcccc---chhhhHhhhcC-CCcEEEe--CCCCCCCHHHHHHHHHHhCCCCC----cEEEe--eeeecCCC
Q 008289 234 GDFVIMRSNGQPVY---NFCVTVDDATM-AISHVIR--AEEHLPNTLRQALIYKALGFSMP----YFAHV--SLILAPDR 301 (571)
Q Consensus 234 ~D~Vl~RsdG~PtY---~fA~vVDD~~m-~ItHVIR--G~Dhl~ntp~q~~l~~alg~~~P----~f~H~--pli~~~~g 301 (571)
.|.||+||||.+|| ++|...+-+.. +.+++|- |.||...-.+-..+.++||+..+ ...|+ .+++..+|
T Consensus 297 ~~~vl~ksDGt~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g 376 (576)
T PLN02286 297 IPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDG 376 (576)
T ss_pred CceEEEECCCchhhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCC
Confidence 48999999999999 57888777766 6888885 99999877777788899998633 46775 56766889
Q ss_pred CcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCC----CcccCCH-----HHHHHhcCccccccCCCcccHHHHH
Q 008289 302 SKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGT----ENEFFTL-----KQLVEKFTIERVNKSGAIFDSTKLR 371 (571)
Q Consensus 302 ~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~----~~e~~s~-----~eli~~F~~~~~~~s~~~fd~~kL~ 371 (571)
+|||||.|. ++++++.+. ++-.....+.-.... ..+.-.. ...+++|++++-..++..||++++.
T Consensus 377 ~kmStR~G~~v~L~dllde-----a~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l 451 (576)
T PLN02286 377 KRFRTRSGEVVRLVDLLDE-----AKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQML 451 (576)
T ss_pred CcccCCCCCeeEHHHHHHH-----HHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHH
Confidence 999999997 788888664 222111111110000 0000000 1457899999999999999999977
Q ss_pred Hhh
Q 008289 372 WMN 374 (571)
Q Consensus 372 wlN 374 (571)
.++
T Consensus 452 ~~~ 454 (576)
T PLN02286 452 DLK 454 (576)
T ss_pred hhc
Confidence 663
No 48
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.46 E-value=2.5e-13 Score=152.46 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=94.3
Q ss_pred CCeEEEecCCcccc---chhhhHhhhcC-CCcEEEe--CCCCCCCHHHHHHHHHHhCCCCC-cEEEee--eeecCCCCcc
Q 008289 234 GDFVIMRSNGQPVY---NFCVTVDDATM-AISHVIR--AEEHLPNTLRQALIYKALGFSMP-YFAHVS--LILAPDRSKL 304 (571)
Q Consensus 234 ~D~Vl~RsdG~PtY---~fA~vVDD~~m-~ItHVIR--G~Dhl~ntp~q~~l~~alg~~~P-~f~H~p--li~~~~g~KL 304 (571)
.|.||+||||.+|| ++|...+=+.. +.+++|- |.||....++-..+.++|||..+ .+.|+. ++. .+|+||
T Consensus 294 ~~~vl~ksDGt~~Y~t~DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~g~km 372 (562)
T PRK12451 294 PPCLIRKSDGATIYATRDLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KDGKKM 372 (562)
T ss_pred CceEEEeCCCccccchhHHHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cCCCCC
Confidence 58999999999999 57777777765 8888885 99999877777788899998744 477764 454 478899
Q ss_pred cccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHH-----HHHHhcCccccccCCCcccHHHHHHhh
Q 008289 305 SKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLK-----QLVEKFTIERVNKSGAIFDSTKLRWMN 374 (571)
Q Consensus 305 SKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~-----eli~~F~~~~~~~s~~~fd~~kL~wlN 374 (571)
|||.|. ++++++.+. |+-.....+.-..++-.+.-... ..+++|++++-..++..||++++..++
T Consensus 373 StR~G~~v~l~dLlde-----a~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~ 443 (562)
T PRK12451 373 STRKGRVVLLEEVLEE-----AIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFE 443 (562)
T ss_pred cCCCCCeeEHHHHHHH-----HHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcC
Confidence 999996 889988664 22222222211000000000011 336788999989999999999977664
No 49
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.2e-11 Score=133.83 Aligned_cols=75 Identities=17% Similarity=0.171 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCchhhhhhhc-hHhHHHHHHHHHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHhHHhHHhhhhh
Q 008289 456 EVAAHLLAAYDGGELLAALEEG-HAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVSP 534 (571)
Q Consensus 456 evl~~lL~~L~~~~~~~~~~~~-~e~i~~~ik~i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLGke~~l~Rl~~ 534 (571)
+.+..+.+.+++.. .++ +.+++..+++++++.++.++.+|+.++-+|.|+..||.++.+|.+||++++.+||+.
T Consensus 445 ~~L~~~a~~les~~-----~~~~e~~~~~~vy~~a~~~~~~~~~~F~~~Y~vliGk~~GPRlg~Fla~lg~dfv~~rir~ 519 (521)
T COG1384 445 EALEDLAEFLESIQ-----KASLEVELHNEVYEVAKKKGILPRAFFQALYRVLIGKERGPRLGSFLALLGVDFVIRRIRL 519 (521)
T ss_pred HHHHHHHHHHhhcc-----cchhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCccHHHHHHHhChHHHHHHHHh
Confidence 44555555554421 122 348999999999999999999999999999999999999999999999999999986
Q ss_pred h
Q 008289 535 R 535 (571)
Q Consensus 535 ~ 535 (571)
+
T Consensus 520 ~ 520 (521)
T COG1384 520 A 520 (521)
T ss_pred c
Confidence 5
No 50
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.41 E-value=1.7e-12 Score=135.65 Aligned_cols=233 Identities=23% Similarity=0.322 Sum_probs=137.4
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc------c--------------------CcHHHHHH
Q 008289 61 APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLE------R--------------------STKESEEA 109 (571)
Q Consensus 61 APSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDTD~~------R--------------------~~~~~~~~ 109 (571)
+|+|||.+||||+++.++-..++|. +...|+.-+||.+.+ + -.+++.+.
T Consensus 8 pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (312)
T cd00668 8 PPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGE 87 (312)
T ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998877777764 334455556554431 1 13567889
Q ss_pred HHHHHHHcCCCCC--CCCCCCCCcccee--ccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCc
Q 008289 110 VLQDLSWLGLDWD--EGPGVGGDYGPYR--QSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGK 185 (571)
Q Consensus 110 i~~~L~wlGl~~D--egp~~~g~~gpy~--QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~ 185 (571)
|.++|+.||+..| .. |+ ..++.+..+++.++|.++|++|.-.-. . + ....|
T Consensus 88 ~~~~l~~lgI~~Dw~~~---------~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~---v---~-------~~~~~--- 142 (312)
T cd00668 88 HKEDFRRLGISYDWSDE---------YITTEPEYSKAVELIFSRLYEKGLIYRGTHP---V---R-------ITEQW--- 142 (312)
T ss_pred HHHHHHHhCccccCCCC---------eECCCHHHHHHHHHHHHHHHHCCCEEeecce---e---E-------eeeeE---
Confidence 9999999999665 41 22 225678889999999999999972100 0 0 00001
Q ss_pred CCCCCH--HHHHHHHhcCCCceEEEecCCCCceEEEeecccee-eccCCCCCCeEEEecC----CccccchhhhHh----
Q 008289 186 WATATD--AEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEV-SWNLDTLGDFVIMRSN----GQPVYNFCVTVD---- 254 (571)
Q Consensus 186 cr~l~~--~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i-~~~~~~~~D~Vl~Rsd----G~PtY~fA~vVD---- 254 (571)
+.+++. ++..+.+.++. + .|+. .+..+ .+- .+..|+.|-|.- |.|..++-|=.|
T Consensus 143 f~~~~~l~~~~~~~~~~~~---~---~p~~--------~~~~~~~~l-~~~~d~~isR~~~WG~~~P~~~i~~Wfds~~~ 207 (312)
T cd00668 143 FFDMPKFKEKLLKALRRGK---I---VPEH--------VKNRMEAWL-ESLLDWAISRQRYWGTPLPEDVFDVWFDSGIG 207 (312)
T ss_pred EEEcHHHHHHHHHHHhcCC---c---CChH--------HHHHHHHHH-hCCCCeEEeccCCCCCcCCcccccchhhccHH
Confidence 111110 11222222221 0 1210 11111 010 122388888853 456677655111
Q ss_pred -----hhcC---------CCcEEEeCCCCC-CCHHHHHHHHHHhCCC-CC-cEEEeeeeecCCCCcccccCCC-CchHHH
Q 008289 255 -----DATM---------AISHVIRAEEHL-PNTLRQALIYKALGFS-MP-YFAHVSLILAPDRSKLSKRHGA-TSVGQF 316 (571)
Q Consensus 255 -----D~~m---------~ItHVIRG~Dhl-~ntp~q~~l~~alg~~-~P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~ 316 (571)
.+.. ..+--+=|.|++ ........+..+++.. +| .+..+.+++..+|+||||+.|+ +++.++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~ 287 (312)
T cd00668 208 PLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDV 287 (312)
T ss_pred HHHHcCCCccchhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCcCCHHHH
Confidence 1111 233333488887 3333444455667654 44 3333388888777999999998 788888
Q ss_pred HHCCCCHHHHHHHHHHhC
Q 008289 317 REMGYLPQAMVNYLALLG 334 (571)
Q Consensus 317 r~~G~~Peai~n~l~~lG 334 (571)
.+. |.|+|++-||+..+
T Consensus 288 ~~~-~~~da~R~~l~~~~ 304 (312)
T cd00668 288 VEK-YGADALRYYLTSLA 304 (312)
T ss_pred HHH-cCcHHHHHHHHhcC
Confidence 887 99999999998655
No 51
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.36 E-value=1.8e-11 Score=128.42 Aligned_cols=246 Identities=20% Similarity=0.278 Sum_probs=137.7
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH--cCC---eEEEEecCCCcc-------------cCcHHHHHHHHHHHHHcCCCCC
Q 008289 61 APSPTGNLHVGGARTALFNYLFARS--KGG---KFVLRIEDTDLE-------------RSTKESEEAVLQDLSWLGLDWD 122 (571)
Q Consensus 61 APSPtG~LHiG~~rtAl~n~l~Ar~--~~G---~fiLRieDTD~~-------------R~~~~~~~~i~~~L~wlGl~~D 122 (571)
.|.|||.+||||+|+.++..+++|. ..| .|+.-+||.+.+ .-.+.+.+.|.++++.||+.+|
T Consensus 8 ~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 87 (319)
T cd00814 8 LPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFD 87 (319)
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 5889999999999999998888884 334 455566666543 2356888999999999999999
Q ss_pred CCCCCCCCccceecc--ccHHHHHHHHHHHHHcCCccc-----ccCCHHH---------------HHHHHHHHH---hCC
Q 008289 123 EGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR-----CFCSNEE---------------LEKMKEIAK---LKQ 177 (571)
Q Consensus 123 egp~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~-----Cfcs~ee---------------l~~~r~~~~---~~~ 177 (571)
-- ++.+ .+.+.-+++.++|.++|.+|. .+|..++ +.+.++... ..+
T Consensus 88 ~~---------~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~ 158 (319)
T cd00814 88 YF---------IRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKN 158 (319)
T ss_pred CC---------eeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhC
Confidence 52 2333 366778899999999999996 2333222 223222111 111
Q ss_pred CCCCCCCcCCCCCHHHHHHHHhcCCC-------c-eEEEecCCCC-c--eEEEeeccceeeccCCCCCCeEEEecCCccc
Q 008289 178 LPPVYTGKWATATDAEVQKELERGTP-------Y-TYRFRVPKGG-S--LKISDLIRGEVSWNLDTLGDFVIMRSNGQPV 246 (571)
Q Consensus 178 ~~~~Y~g~cr~l~~~e~~~~~~~g~~-------~-~iR~k~~~~~-~--~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~Pt 246 (571)
..... +..-..++.+.+++|.+ . .+-+.+|... . .+|-|..-|-++. .|.+.
T Consensus 159 ~~~~~----p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~~y~~~-------------~~~~~ 221 (319)
T cd00814 159 PDFIW----PENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIGYISA-------------TGYYN 221 (319)
T ss_pred CccCC----CHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCCCCcEEEEehhhHHHHHHH-------------ccccc
Confidence 00011 00001223333444322 0 1111222111 0 1122222221110 01111
Q ss_pred cchhh--hHhhhcCCCcEEEeCCCCCCC-HHHHHHHHHHhCCCCCc-EEEeeeeecCCCCcccccCCC-CchHHHHHCCC
Q 008289 247 YNFCV--TVDDATMAISHVIRAEEHLPN-TLRQALIYKALGFSMPY-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGY 321 (571)
Q Consensus 247 Y~fA~--vVDD~~m~ItHVIRG~Dhl~n-tp~q~~l~~alg~~~P~-f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~ 321 (571)
-+-.+ --.+..-.+.|++ |.|.+.. +-....+..++|+++|. +.++..++. +|+||||+.|+ +++.++.+. |
T Consensus 222 ~~~~~~~~~~~~~~~~v~~~-G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~~~-~g~kmSkS~gn~i~~~~~l~~-~ 298 (319)
T cd00814 222 EEWGNSWWWKDGWPELVHFI-GKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYLTV-EGKKMSKSRGNVVDPDDLLER-Y 298 (319)
T ss_pred ccccchhhhhcCCCceEEEE-eechhhhhHHHHHHHHHhCCCCCCcEeeeeeeEEE-CCeeecccCCcccCHHHHHHH-c
Confidence 11000 0001222344554 7887642 11122345677887664 456666544 59999999997 788888887 7
Q ss_pred CHHHHHHHHHHhCC
Q 008289 322 LPQAMVNYLALLGW 335 (571)
Q Consensus 322 ~Peai~n~l~~lG~ 335 (571)
.|++++-||+..+-
T Consensus 299 ~~d~~R~~l~~~~~ 312 (319)
T cd00814 299 GADALRYYLLRERP 312 (319)
T ss_pred CchHHHHHHHhcCC
Confidence 99999999987664
No 52
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=5.3e-12 Score=135.22 Aligned_cols=230 Identities=23% Similarity=0.310 Sum_probs=157.7
Q ss_pred ceEEEeCCCCC--CcCchhhHHHHHHHHHHHH------HcCCeEEEEecCCCcc---cCc---------------HHHHH
Q 008289 55 QVRVRFAPSPT--GNLHVGGARTALFNYLFAR------SKGGKFVLRIEDTDLE---RST---------------KESEE 108 (571)
Q Consensus 55 ~vr~RFAPSPt--G~LHiG~~rtAl~n~l~Ar------~~~G~fiLRieDTD~~---R~~---------------~~~~~ 108 (571)
.-++=|...|| ..-||||||+++--.++-| .++..|+..|.|+|.+ |.. .-|++
T Consensus 54 ~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~ 133 (586)
T KOG2007|consen 54 NKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYEE 133 (586)
T ss_pred CeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHHH
Confidence 44688887777 7799999999985444333 4778999999999986 332 23679
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCc---
Q 008289 109 AVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGK--- 185 (571)
Q Consensus 109 ~i~~~L~wlGl~~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~--- 185 (571)
....|+..|.+-+..- ..+-||++....++++++|++|.||.-. .++|...
T Consensus 134 eF~~DM~~LnvLpPtv--------~tRVSeyvp~II~fIqkIIdnG~aY~~d------------------GsVYFdv~kf 187 (586)
T KOG2007|consen 134 EFLQDMAALNVLPPTV--------QTRVSEYVPQIIKFIQKIIDNGYAYAVD------------------GSVYFDVDKF 187 (586)
T ss_pred HHHHHHHHhCCCCCcc--------cchhhhchHHHHHHHHHHHhCCceeeeC------------------CcEEEecccc
Confidence 9999999999764331 3488999999999999999999999631 1233211
Q ss_pred ---CCCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEec-------------CCccccch
Q 008289 186 ---WATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNF 249 (571)
Q Consensus 186 ---cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rs-------------dG~PtY~f 249 (571)
+..|. .+. +.+.+|+ |... | -......||.|||+ .|.|.||.
T Consensus 188 ~~~YgKL~-G~~-~~~~~gE-----------g~l~--d-------s~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHI 245 (586)
T KOG2007|consen 188 PHSYGKLV-GQR-KNLQEGE-----------GVLS--D-------SRKRSPADFALWKASKPGEPSWESPWGKGRPGWHI 245 (586)
T ss_pred cchhhhhc-Cch-hhcccCc-----------Cccc--c-------ccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCcee
Confidence 11111 000 1111121 2111 0 11125689999996 48899999
Q ss_pred hhhH----------hhhcCCCcEEEeCCCCCCCHHHHHHHH-HHhCCCCCcEEEeeeeecCCCCcccccCCC-CchHHHH
Q 008289 250 CVTV----------DDATMAISHVIRAEEHLPNTLRQALIY-KALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFR 317 (571)
Q Consensus 250 A~vV----------DD~~m~ItHVIRG~Dhl~ntp~q~~l~-~alg~~~P~f~H~pli~~~~g~KLSKR~g~-~~v~~~r 317 (571)
.|.+ |-|-.||...+- |+.|.-.|..-+ +.=.| .-.|.|.+.+ ..+|.||||+.++ +||++..
T Consensus 246 ECSaMas~~lG~~lDIH~GG~DL~FP---HHeNEiAQ~eA~~~~~~w-VnYflHtGhL-~i~g~KMSKSLkNFiTIke~L 320 (586)
T KOG2007|consen 246 ECSAMASAILGSQLDIHGGGIDLAFP---HHENEIAQSEAAFDDSQW-VNYFLHTGHL-TINGEKMSKSLKNFITIKEAL 320 (586)
T ss_pred eeHHHHHHhhccccceecCcccccCC---CcccHHHHHHHHhcCCcc-ceeEEEcCee-eeccchhhhhhccceeHHHHH
Confidence 8763 566666665553 788888887432 21112 1257899885 5688999999877 8998887
Q ss_pred HCCCCHHHHHHHHHHhCCCCC
Q 008289 318 EMGYLPQAMVNYLALLGWGDG 338 (571)
Q Consensus 318 ~~G~~Peai~n~l~~lG~~~~ 338 (571)
+. |.|.+++-++.+--|...
T Consensus 321 k~-~sp~qLRl~fl~~~wr~~ 340 (586)
T KOG2007|consen 321 KK-YSPRQLRLAFLLHQWRSP 340 (586)
T ss_pred Hh-cCHHHHHHHHHHHHhcCc
Confidence 75 999999999998888754
No 53
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=99.34 E-value=5.6e-11 Score=122.75 Aligned_cols=193 Identities=19% Similarity=0.225 Sum_probs=142.6
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCC-------CcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCcccee
Q 008289 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDT-------DLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYR 135 (571)
Q Consensus 63 SPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDT-------D~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~ 135 (571)
-|||.|||||...|+.+|...+..|.+.++.|.|. +..+...++...+..++..+|++|+.. ..|.
T Consensus 7 ~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~-------~i~~ 79 (280)
T cd00806 7 QPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKS-------TIFF 79 (280)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccC-------EEEE
Confidence 48999999999999999999999999999999998 556777888899999999999999764 2688
Q ss_pred ccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCc
Q 008289 136 QSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGS 215 (571)
Q Consensus 136 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~ 215 (571)
||+..+.|.-. ..+.|.||..+++.+ ..|..+ ...+. .
T Consensus 80 qS~~~~~~~l~--------~~l~~~~~~~~l~r~----------~~fk~~------------~~~~~------------~ 117 (280)
T cd00806 80 QSDVPEHYELA--------WLLSCVVTFGELERM----------TGFKDK------------SAQGE------------S 117 (280)
T ss_pred cCCcHHHHHHH--------HHHhCcCCHHHHHhc----------cchhhh------------hccCC------------C
Confidence 99998665432 136799999888532 122100 00000 0
Q ss_pred eEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhC------CCCCc
Q 008289 216 LKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG------FSMPY 289 (571)
Q Consensus 216 ~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg------~~~P~ 289 (571)
+ +-|..+|-.--+.|=...+.++|..|.|-..+.-.-.-+.+.+| +..|.
T Consensus 118 ~------------------------~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~ 173 (280)
T cd00806 118 V------------------------NIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPA 173 (280)
T ss_pred C------------------------cchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCe
Confidence 0 11344555444555555666999999999877777777888898 78899
Q ss_pred EEEe--eeeecCCC--CcccccCC--CCchHHHHHCCCCHHHHHHHHHHhC
Q 008289 290 FAHV--SLILAPDR--SKLSKRHG--ATSVGQFREMGYLPQAMVNYLALLG 334 (571)
Q Consensus 290 f~H~--pli~~~~g--~KLSKR~g--~~~v~~~r~~G~~Peai~n~l~~lG 334 (571)
..|. ++|.+.+| +||||+.+ .+.+.+ .|+.|..-+...=
T Consensus 174 ~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d------~~~~i~~KI~~a~ 218 (280)
T cd00806 174 ALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD------SPKEIKKKIMKAA 218 (280)
T ss_pred eeccCCCccccCCCCCCcccCCCCCCeEEeeC------CHHHHHHHHHhcc
Confidence 9888 99988776 49999987 355554 7888888886543
No 54
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.32 E-value=1.4e-10 Score=122.97 Aligned_cols=240 Identities=20% Similarity=0.234 Sum_probs=147.3
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcccC---------------------------
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLERS--------------------------- 102 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDTD~~R~--------------------------- 102 (571)
++.+-=+++|+|.+||||+|+.+....++|. +...|+.=.||-|+-|.
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~ 99 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC 99 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence 4666668899999999999999887777774 55678888899987554
Q ss_pred ---cHHHHHHHHHHHHHcCCCCCCCCCCCCCccceeccc--cHHHHHHHHHHHHH-cCCcccccCCHHHHHHHHHHHHhC
Q 008289 103 ---TKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLE-SGHVYRCFCSNEELEKMKEIAKLK 176 (571)
Q Consensus 103 ---~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~-~G~AY~Cfcs~eel~~~r~~~~~~ 176 (571)
.+.+.+.+.+.|+.||+++|- |++++ +...|.+.+...++ .+.+. +-|.+.+......
T Consensus 100 ~~~~d~~~~~f~~~l~~lgi~~d~----------~~~T~~y~~g~~~~~i~~~L~~~~~I~------~i~~~~~~~~~~~ 163 (353)
T cd00674 100 ESYAEHFERPFEESLEKLGIEVEF----------ISQSQMYKSGLYDENILIALEKRDEIM------AILNEYRGRELQE 163 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeee----------eecCCchhhchHHHHHHHHHHHCChHH------HHHHHhcCCccCC
Confidence 346677889999999999884 67775 34356665555544 34333 3333333211111
Q ss_pred CCCC--CCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeeccc--eeeccCCCCCCeEEEecCCccccchhhh
Q 008289 177 QLPP--VYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRG--EVSWNLDTLGDFVIMRSNGQPVYNFCVT 252 (571)
Q Consensus 177 ~~~~--~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G--~i~~~~~~~~D~Vl~RsdG~PtY~fA~v 252 (571)
.-.| +++..|..++ ..+.+ -++...+++++.. .|.-...|+..| +.. ||-|- |
T Consensus 164 ~~~P~~p~c~~cg~~~-~~v~~--~d~~~~~v~y~c~-cG~~g~~~~~~g~~KL~-----------Wr~dW-~------- 220 (353)
T cd00674 164 TWYPFMPYCEKCGKDT-TTVEA--YDAKAGTVTYKCE-CGHEETVDIRTGRGKLT-----------WRVDW-P------- 220 (353)
T ss_pred CceeeeeecCCcCcce-eEEEE--EeCCCCeEEEEcC-CCCEEEEeecCCCcccC-----------CCCCc-h-------
Confidence 1111 2334454222 11000 0111122333221 122111222121 222 22221 1
Q ss_pred HhhhcCCCcEEEeCCCCCCC---HHHHHHHHH-HhCCCCCcEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHH
Q 008289 253 VDDATMAISHVIRAEEHLPN---TLRQALIYK-ALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMV 327 (571)
Q Consensus 253 VDD~~m~ItHVIRG~Dhl~n---tp~q~~l~~-alg~~~P~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~ 327 (571)
-.=...||+-=+-|.||..+ ...-..+.+ +||+++|....+.+++..+|.|||||+|+ +++.++.+. +.|++++
T Consensus 221 ~rW~~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~l~gg~KMSKSkGnvI~~~dll~~-~~~dalR 299 (353)
T cd00674 221 MRWAILGVDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIGLKGGGKMSSSKGNVITPSDWLEV-APPEVLR 299 (353)
T ss_pred hhhhhcCCCEEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEEeCCCCccCCCCCCcCCHHHHHHH-hChHHHH
Confidence 11223567777789999987 777777887 99999997777788887777799999998 788888887 8888888
Q ss_pred HHHHHhC
Q 008289 328 NYLALLG 334 (571)
Q Consensus 328 n~l~~lG 334 (571)
-|+..-.
T Consensus 300 ~~~l~~~ 306 (353)
T cd00674 300 YLYARRK 306 (353)
T ss_pred HHHHhCC
Confidence 8876544
No 55
>PLN02224 methionine-tRNA ligase
Probab=99.31 E-value=3.6e-11 Score=136.00 Aligned_cols=262 Identities=19% Similarity=0.256 Sum_probs=149.0
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHHc--CCe---EEEEecCCCcc-------------cCcHHHHHHHHHHHHHc
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSK--GGK---FVLRIEDTDLE-------------RSTKESEEAVLQDLSWL 117 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~--~G~---fiLRieDTD~~-------------R~~~~~~~~i~~~L~wl 117 (571)
+.|==.|.|||.+|||||++.+....+||.. .|. |+-=+||.+.+ ....++.+.+.+.+++|
T Consensus 72 ~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 151 (616)
T PLN02224 72 VLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDL 151 (616)
T ss_pred EEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Confidence 5555566999999999999999999998863 344 55555555421 22356678888999999
Q ss_pred CCCCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCC-CCHHHH
Q 008289 118 GLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWAT-ATDAEV 194 (571)
Q Consensus 118 Gl~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~-l~~~e~ 194 (571)
||+||. .|+.++ +.+.-++...+|.++|.+|.-. .+.-|+-.|.. +++.++
T Consensus 152 ~I~~D~---------f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~-----------------~~~~yc~~ce~f~~~~~l 205 (616)
T PLN02224 152 DIAYDK---------FIRTTDPKHEAIVKEFYARVFANGDIYRAD-----------------YEGLYCVNCEEYKDEKEL 205 (616)
T ss_pred CCCCCc---------CeeCCCHHHHHHHHHHHHHHHHCCCEEEee-----------------eeeeecCCCCCCCCHHHH
Confidence 999996 345554 6778888999999999999710 01112222211 222221
Q ss_pred HH---HHhcCCCceEE------EecCCCCceEEEeeccc----------------ee-eccCCCCCCeEEEecC---Ccc
Q 008289 195 QK---ELERGTPYTYR------FRVPKGGSLKISDLIRG----------------EV-SWNLDTLGDFVIMRSN---GQP 245 (571)
Q Consensus 195 ~~---~~~~g~~~~iR------~k~~~~~~~~~~D~v~G----------------~i-~~~~~~~~D~Vl~Rsd---G~P 245 (571)
.+ ....|.|..+| |+++. |.|.++. .+ .+-...+.|.-|-|.. |.|
T Consensus 206 ~~~~~~~~~~~~~~~~~e~~~ff~Ls~-----~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIp 280 (616)
T PLN02224 206 LENNCCPVHQMPCVARKEDNYFFALSK-----YQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIP 280 (616)
T ss_pred cCCCCCCCCCCcceEEecceEEEEhHH-----HHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceE
Confidence 10 00012222221 22221 1010000 00 1111246677777742 332
Q ss_pred c--------cch-------hhhHh----hh---------cCCCcEEEeCCCCCCC-HHHHHHHHHHhCCCCCc-EEEeee
Q 008289 246 V--------YNF-------CVTVD----DA---------TMAISHVIRAEEHLPN-TLRQALIYKALGFSMPY-FAHVSL 295 (571)
Q Consensus 246 t--------Y~f-------A~vVD----D~---------~m~ItHVIRG~Dhl~n-tp~q~~l~~alg~~~P~-f~H~pl 295 (571)
. |-+ -.++. +. --..-|+| |.|.+.. +-..-.+..++|++.|. +..+..
T Consensus 281 vP~~~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~i-GKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~ 359 (616)
T PLN02224 281 VPDDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLI-GKDILRFHAVYWPAMLMSAGLELPKMVFGHGF 359 (616)
T ss_pred CCCCCCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEE-eecccccHHHHHHHHHHHCCCCCCcEEEeccc
Confidence 2 210 00010 00 01123544 7777642 11222233456888884 334455
Q ss_pred eecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhc
Q 008289 296 ILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKF 353 (571)
Q Consensus 296 i~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F 353 (571)
++.+|+||||+.|+ +...++.+. |.|++++-||+..+ +..++..||.+++++..
T Consensus 360 -l~~eG~KMSKS~GN~i~p~e~l~~-ygaD~~R~yLl~~~--p~~~d~~fs~~~~~~~~ 414 (616)
T PLN02224 360 -LTKDGMKMGKSLGNTLEPFELVQK-FGPDAVRYFFLREV--EFGNDGDYSEDRFIKIV 414 (616)
T ss_pred -EecCCccccccCCccCCHHHHHHH-cCcHHHHHHHHhcC--CCcCCCCCCHHHHHHHH
Confidence 57799999999998 788888777 99999999998764 23345578887765443
No 56
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.30 E-value=2.4e-11 Score=135.69 Aligned_cols=280 Identities=19% Similarity=0.270 Sum_probs=151.3
Q ss_pred EEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCe---EEEEecCCCc-------------ccCcHHHHHHHHHHHHHcC
Q 008289 57 RVRFAPSPTGNLHVGGARTALFNYLFARS--KGGK---FVLRIEDTDL-------------ERSTKESEEAVLQDLSWLG 118 (571)
Q Consensus 57 r~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~---fiLRieDTD~-------------~R~~~~~~~~i~~~L~wlG 118 (571)
+|--.|+|||.+||||+|+.+....+||. ..|. |+.-+||.|. ....+.+.+.+.++++.||
T Consensus 3 it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~Lg 82 (530)
T TIGR00398 3 ITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLN 82 (530)
T ss_pred EecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 45568999999999999999999999874 3454 4445555433 2235688899999999999
Q ss_pred CCCCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhCCCCCCCCC---------
Q 008289 119 LDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPPVYTG--------- 184 (571)
Q Consensus 119 l~~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~~Y~g--------- 184 (571)
+.+|..+ .-..+.+.+..+++.++|.++|.+|. =||..++---- + ....|.- .+.+
T Consensus 83 I~~D~~~-------~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~-~-~~v~g~c-p~c~~~~~~g~~c 152 (530)
T TIGR00398 83 ISFDRFI-------RTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLP-D-RYVEGTC-PKCGSEDARGDHC 152 (530)
T ss_pred CCCCCCc-------cCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCc-h-hhhcCCC-CCCCCcccccchh
Confidence 9998631 11233477788999999999999994 34444331110 0 0111211 1111
Q ss_pred -cCCC-CCHHHHHH--HHhcCCCceEE------EecCCC------------CceEEEeecccee-eccCCCCCCeEEEec
Q 008289 185 -KWAT-ATDAEVQK--ELERGTPYTYR------FRVPKG------------GSLKISDLIRGEV-SWNLDTLGDFVIMRS 241 (571)
Q Consensus 185 -~cr~-l~~~e~~~--~~~~g~~~~iR------~k~~~~------------~~~~~~D~v~G~i-~~~~~~~~D~Vl~Rs 241 (571)
.|.. ..+.+... ....|.+..+| |+++.- ..+.+...++..+ .+-.+.+.|+-|-|.
T Consensus 153 e~cg~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~ 232 (530)
T TIGR00398 153 EVCGRHLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRD 232 (530)
T ss_pred hhccccCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCc
Confidence 1221 11111100 00123433332 222210 0000111111111 111123667777774
Q ss_pred C---Cccc--c------c--------hhhh-H-----h--------hhcCCCcEEEeCCCCCC-CHHHHHHHHHHhCCCC
Q 008289 242 N---GQPV--Y------N--------FCVT-V-----D--------DATMAISHVIRAEEHLP-NTLRQALIYKALGFSM 287 (571)
Q Consensus 242 d---G~Pt--Y------~--------fA~v-V-----D--------D~~m~ItHVIRG~Dhl~-ntp~q~~l~~alg~~~ 287 (571)
. |.|. + - ++.. . + |.+-.+.|+ -|.|.+- .+-..-.++.++|+++
T Consensus 233 ~~~WGipvP~~~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~-~G~Di~~~h~~~~~a~l~~~~~~~ 311 (530)
T TIGR00398 233 LVYWGIPVPNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHF-IGKDIVRFHTIYWPAMLMGLGLPL 311 (530)
T ss_pred CCCCCeeCCCCCCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEE-EecccchhHHHHHHHHHHhCCCCC
Confidence 2 2211 1 1 1110 0 0 001112233 3777662 1122234557789877
Q ss_pred Cc-EEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHH
Q 008289 288 PY-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVE 351 (571)
Q Consensus 288 P~-f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~ 351 (571)
|. +..+++++.. |+|||||.|+ +++.++.++ |-+++++-|++..+- ...+-.|+.+.+.+
T Consensus 312 ~~~~~~~g~v~~~-g~KmSKS~Gn~i~~~d~i~~-~g~D~lR~~l~~~~~--~~~d~~f~~~~l~~ 373 (530)
T TIGR00398 312 PTQVFSHGYLTVE-GGKMSKSLGNVVDPSDLLAR-FGADILRYYLLKERP--LGKDGDFSWEDFVE 373 (530)
T ss_pred CCEEEeeccEEEC-CceecccCCceecHHHHHHH-cCchHHHHHHhhCCC--CCCCCCCCHHHHHH
Confidence 74 5566777665 9999999998 788888776 889999999987652 12234466666543
No 57
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=7.2e-12 Score=139.35 Aligned_cols=277 Identities=21% Similarity=0.259 Sum_probs=170.5
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------------ccCcHHHHHHHHHHHHHc
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL----------------ERSTKESEEAVLQDLSWL 117 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~----------------~R~~~~~~~~i~~~L~wl 117 (571)
++|-=-|.|||.+||||++|.|-...+||. ..|.=++=+.-||. +--.+.+.+.+.++++||
T Consensus 8 ~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l 87 (558)
T COG0143 8 LVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKAL 87 (558)
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 344446899999999999999999999996 44766666666665 223567788899999999
Q ss_pred CCCCCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhCCCCCCCCC--------
Q 008289 118 GLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPPVYTG-------- 184 (571)
Q Consensus 118 Gl~~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~~Y~g-------- 184 (571)
+|++|. |+..-.+++.+.-+++.++|.++|..|. -||.+++.--- .....|. +.|.|
T Consensus 88 ~IsfD~-------F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~--dr~v~g~-cp~cg~~~arGD~ 157 (558)
T COG0143 88 NISFDN-------FIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLP--DRYVEGT-CPKCGGEDARGDQ 157 (558)
T ss_pred CCcccc-------cccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEccccccccc--chheecc-CCCcCccccCcch
Confidence 999996 3444455688899999999999999986 45555542210 0111121 12222
Q ss_pred --cC-CCCCHHHHH--HHHhcCCCceE------EEecCCCCceEEEeeccceee-----------------ccCCCCCCe
Q 008289 185 --KW-ATATDAEVQ--KELERGTPYTY------RFRVPKGGSLKISDLIRGEVS-----------------WNLDTLGDF 236 (571)
Q Consensus 185 --~c-r~l~~~e~~--~~~~~g~~~~i------R~k~~~~~~~~~~D~v~G~i~-----------------~~~~~~~D~ 236 (571)
.| +.+++.+.. ...-+|...++ =|+++. |+|.+..-+. |-...+.|+
T Consensus 158 Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~-----~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~ 232 (558)
T COG0143 158 CENCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSK-----FQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDL 232 (558)
T ss_pred hhhccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHH-----hHHHHHHHHHhCccccCChHHHHHHHHHHHccCccc
Confidence 12 134444421 11122322222 233331 2333222221 111358899
Q ss_pred EEEecC-----------Cccccch-------hh------------hHhhh----cCCCcEEEeCCCCCCCHHHHHHHH--
Q 008289 237 VIMRSN-----------GQPVYNF-------CV------------TVDDA----TMAISHVIRAEEHLPNTLRQALIY-- 280 (571)
Q Consensus 237 Vl~Rsd-----------G~PtY~f-------A~------------vVDD~----~m~ItHVIRG~Dhl~ntp~q~~l~-- 280 (571)
-|-|.+ +...|-+ -+ .-+.+ +-.+-|+| |.| +++.|..++
T Consensus 233 ~IsR~~~~WGipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfI-GKD---ii~FHav~wPa 308 (558)
T COG0143 233 SITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFI-GKD---IIRFHAVYWPA 308 (558)
T ss_pred ceecCCCCCCccCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEe-ccc---cCcchhhHHHH
Confidence 999954 1222321 01 11111 33455777 666 447776555
Q ss_pred --HHhCCCCCcEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcC
Q 008289 281 --KALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFT 354 (571)
Q Consensus 281 --~alg~~~P~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~ 354 (571)
.+.|.+.|.-.+..-.+..+|.||||+.|+ +...++.+. |.|++++.||+.-.- .+.+-.||.+++++.-+
T Consensus 309 mL~~~~~~lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~-~~~D~lRYyL~~~~p--~~~D~dFs~~~f~~rvN 382 (558)
T COG0143 309 MLMAAGLPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQ-YGVDALRYYLARELP--EGSDGDFSWEDFVERVN 382 (558)
T ss_pred HHHhCCCCCCCEEEeeeeEEECCccccccCCcEEeHHHHHHH-cCchHhHHHHHHhCC--CCCCCCCCHHHHHHHHH
Confidence 445777886444333334578899999998 888888887 999999999986432 33456789999887554
No 58
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.28 E-value=2.5e-11 Score=139.30 Aligned_cols=272 Identities=18% Similarity=0.256 Sum_probs=154.5
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------------ccCcHHHHHHHHHHHHHcCCCCC
Q 008289 61 APSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL----------------ERSTKESEEAVLQDLSWLGLDWD 122 (571)
Q Consensus 61 APSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~----------------~R~~~~~~~~i~~~L~wlGl~~D 122 (571)
.|+|||.+||||+++.+....+||. ..|.=++-+-.||. .-..+.+.+.+.+++++||+.+|
T Consensus 10 ~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~i~~d 89 (673)
T PRK00133 10 LPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGFGISFD 89 (673)
T ss_pred CCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 5799999999999999999999985 34655555555653 22357889999999999999998
Q ss_pred CCCCCCCCccceecc--ccHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhCCCCC------CCCCc---C
Q 008289 123 EGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPP------VYTGK---W 186 (571)
Q Consensus 123 egp~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~------~Y~g~---c 186 (571)
.- ++.+ ++.+.-+++.++|.++|.+|. .||..++---- + ....|.-| .|-.. |
T Consensus 90 ~f---------~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~-~-~~v~g~cp~C~~~d~~g~~ce~c 158 (673)
T PRK00133 90 NY---------GSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLP-D-RFVKGTCPKCGAEDQYGDNCEVC 158 (673)
T ss_pred CC---------ccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCcc-c-hheecccCCCCCcccCCchhhhc
Confidence 52 2333 588899999999999999997 66665542110 0 00111100 01111 2
Q ss_pred CC-CCHHHHHHH--HhcCCCceEE------EecCCC---------CceEEEeecccee-eccCCCCCCeEEEecC---Cc
Q 008289 187 AT-ATDAEVQKE--LERGTPYTYR------FRVPKG---------GSLKISDLIRGEV-SWNLDTLGDFVIMRSN---GQ 244 (571)
Q Consensus 187 r~-l~~~e~~~~--~~~g~~~~iR------~k~~~~---------~~~~~~D~v~G~i-~~~~~~~~D~Vl~Rsd---G~ 244 (571)
.. +.++++... ...|.+..+| |+++.- ....|..-++..+ .+-...+.|+.|-|.- |.
T Consensus 159 g~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~Gi 238 (673)
T PRK00133 159 GATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGELQPNVANKMKEWLEEGLQDWDISRDAPYFGF 238 (673)
T ss_pred cccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCcccceeeeCCccce
Confidence 11 223332110 0123333332 332210 0000000011110 0101245666666643 22
Q ss_pred -----------------cccchhhh--Hhh--------hc-----CCCcEEEeCCCCCCCHHHHH----HHHHHhCCCCC
Q 008289 245 -----------------PVYNFCVT--VDD--------AT-----MAISHVIRAEEHLPNTLRQA----LIYKALGFSMP 288 (571)
Q Consensus 245 -----------------PtY~fA~v--VDD--------~~-----m~ItHVIRG~Dhl~ntp~q~----~l~~alg~~~P 288 (571)
+.|-.+.. .++ +- -.+.|+| |.|-+ ..|. .++.+.|++.|
T Consensus 239 pvP~~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~i-GkDi~---~fH~i~wpa~l~a~g~~lP 314 (673)
T PRK00133 239 EIPGAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFI-GKDII---YFHTLFWPAMLEGAGYRLP 314 (673)
T ss_pred ECCCCCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEE-eecch---hHHHHHHHHHHHhCCCCCC
Confidence 22211110 111 11 1123544 66644 5553 34466899888
Q ss_pred c-EEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCC-CcccCCHHHHHH
Q 008289 289 Y-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGT-ENEFFTLKQLVE 351 (571)
Q Consensus 289 ~-f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~-~~e~~s~~eli~ 351 (571)
. +.-+++++. +|+|||||.|+ ++..++.+. |-++|++-||+..+. .. .+..|+.+++..
T Consensus 315 ~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie~-ygaDalR~~ll~~~~--~~~~D~~Fs~~~~~~ 376 (673)
T PRK00133 315 TNVFAHGFLTV-EGAKMSKSRGTFIWARTYLDH-LDPDYLRYYLAAKLP--ETIDDLDFNWEDFQQ 376 (673)
T ss_pred CEEeeeccEEe-cCCcccccCCcccCHHHHHHH-cCchHHHHHHHhcCC--CCCCCCCCCHHHHHH
Confidence 4 344567666 99999999998 788888887 889999999986653 22 345678777643
No 59
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.23 E-value=7.2e-11 Score=134.98 Aligned_cols=260 Identities=22% Similarity=0.276 Sum_probs=144.8
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHH--cCCe---EEEEecCCCcc-------------cCcHHHHHHHHHHHHHcCCCC
Q 008289 60 FAPSPTGNLHVGGARTALFNYLFARS--KGGK---FVLRIEDTDLE-------------RSTKESEEAVLQDLSWLGLDW 121 (571)
Q Consensus 60 FAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~---fiLRieDTD~~-------------R~~~~~~~~i~~~L~wlGl~~ 121 (571)
=-|.|||.+||||+++.+....++|. ..|. |+.-.||.+.+ ...+.+.+.|.+++++||+.+
T Consensus 11 ~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~ 90 (648)
T PRK12267 11 PIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISY 90 (648)
T ss_pred CCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35799999999999999999998885 3344 44444544432 235788899999999999999
Q ss_pred CCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccc-----cCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHH
Q 008289 122 DEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRC-----FCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEV 194 (571)
Q Consensus 122 Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C-----fcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~ 194 (571)
|.- ++.|+ +.+.-+++.++|.++|++|.- ||..++--- .+.....+ ++|-
T Consensus 91 D~f---------~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l-~~~~l~~~------~~c~------- 147 (648)
T PRK12267 91 DKF---------IRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFF-TESQLVDG------GKCP------- 147 (648)
T ss_pred CCC---------eeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccC-ChHHhccC------CcCC-------
Confidence 963 34443 667778999999999999961 332221100 00000000 1121
Q ss_pred HHHHhcCCCceEE------EecCCC----------Cc-eEEEeecccee--eccCCCCCCeEEEecC---Ccc-------
Q 008289 195 QKELERGTPYTYR------FRVPKG----------GS-LKISDLIRGEV--SWNLDTLGDFVIMRSN---GQP------- 245 (571)
Q Consensus 195 ~~~~~~g~~~~iR------~k~~~~----------~~-~~~~D~v~G~i--~~~~~~~~D~Vl~Rsd---G~P------- 245 (571)
.+|.|..+| |+++.- .. ..+..-.+.++ .+-.+.+.|..|-|.. |.|
T Consensus 148 ----~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~ 223 (648)
T PRK12267 148 ----DCGREVELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKH 223 (648)
T ss_pred ----CCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCC
Confidence 112222222 222210 00 00000111111 1112236677777742 222
Q ss_pred -ccch-------hhhHh-------hhc--CCCcEEEeCCCCCCCHHHHHHH----HHHhCCCCCcEEE-eeeeecCCCCc
Q 008289 246 -VYNF-------CVTVD-------DAT--MAISHVIRAEEHLPNTLRQALI----YKALGFSMPYFAH-VSLILAPDRSK 303 (571)
Q Consensus 246 -tY~f-------A~vVD-------D~~--m~ItHVIRG~Dhl~ntp~q~~l----~~alg~~~P~f~H-~pli~~~~g~K 303 (571)
.|-+ -.++. +.. -.-+..+-|.|.+ +-|..+ ..++|+++|.-.. ++.++ .+|+|
T Consensus 224 v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii---~fH~i~wpa~l~~~~~~~p~~v~~hg~l~-~eg~K 299 (648)
T PRK12267 224 VVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDIL---RFHAIYWPIMLMALGLPLPKKVFAHGWWL-MKDGK 299 (648)
T ss_pred EEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeec---chhHHHHHHHHHhCCCCCCcEEEecceEE-ECCce
Confidence 1210 00110 000 0112223377665 345433 4577888886443 34443 47899
Q ss_pred ccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhc
Q 008289 304 LSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKF 353 (571)
Q Consensus 304 LSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F 353 (571)
|||+.|+ ++..++.+. |.|++++-||+.-+- ...+-.||.+++.+.+
T Consensus 300 MSKS~GN~i~p~d~l~~-ygaD~lR~~L~~~~~--~~~D~~fs~~~~~~~~ 347 (648)
T PRK12267 300 MSKSKGNVVDPEELVDR-YGLDALRYYLLREVP--FGSDGDFSPEALVERI 347 (648)
T ss_pred ecccCCcccCHHHHHHH-cCCcHHHHHHHhcCC--CCCCCCCCHHHHHHHH
Confidence 9999998 778888775 899999999986531 2234568888876533
No 60
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.21 E-value=1.4e-10 Score=124.62 Aligned_cols=89 Identities=29% Similarity=0.405 Sum_probs=67.7
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------c-----------------------CcHHH
Q 008289 61 APSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE---------R-----------------------STKES 106 (571)
Q Consensus 61 APSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~---------R-----------------------~~~~~ 106 (571)
.|+|||.|||||+++.+....+||. ..|.-++.+-.+|.. + ...++
T Consensus 9 pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (382)
T cd00817 9 PPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEES 88 (382)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999986 447777766666652 0 12457
Q ss_pred HHHHHHHHHHcCCC--CCCCCCCCCCccceecc--ccHHHHHHHHHHHHHcCCccc
Q 008289 107 EEAVLQDLSWLGLD--WDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 107 ~~~i~~~L~wlGl~--~Degp~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 158 (571)
.+.+.++++.||+. ||. .|+.+ ++.+.-+....+|.++|.+|.
T Consensus 89 ~~~~~~~~~~lgi~~Dw~~---------~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 135 (382)
T cd00817 89 GGKIREQLKRLGASVDWSR---------EYFTMDPGLSRAVQEAFVRLYEKGLIYR 135 (382)
T ss_pred HHHHHHHHHHhCceeecCC---------CcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 78899999999985 555 23333 345566677799999999997
No 61
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.17 E-value=1.3e-10 Score=123.71 Aligned_cols=130 Identities=17% Similarity=0.266 Sum_probs=77.5
Q ss_pred CCCeEEEecCCccccc---hhhhHhhh-cCCCcEEEe--CCCCCCCHHHHHHHHHHhCCC--CCcEEEe--eeeecCCCC
Q 008289 233 LGDFVIMRSNGQPVYN---FCVTVDDA-TMAISHVIR--AEEHLPNTLRQALIYKALGFS--MPYFAHV--SLILAPDRS 302 (571)
Q Consensus 233 ~~D~Vl~RsdG~PtY~---fA~vVDD~-~m~ItHVIR--G~Dhl~ntp~q~~l~~alg~~--~P~f~H~--pli~~~~g~ 302 (571)
..|.||+||||.+||. +|...+=+ ..+.+-+|- |.||...-.+-..+.++||+. .....|+ .+++.++|+
T Consensus 207 ~k~~Vl~ksDGt~~Y~trDiA~~~~r~~~~~~d~~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk 286 (354)
T PF00750_consen 207 DKDRVLRKSDGTSTYLTRDIAYHLYRFEEYGFDKIIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGK 286 (354)
T ss_dssp SS-EEEEETTSEB-HHHHHHHHHHHHHCCSS-SEEEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBE
T ss_pred CCcceEEcCCCceEEEcchHHHHHHHHhhhccccEEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCC
Confidence 3578999999999995 67777655 577777774 888886555555777899983 3466776 466678997
Q ss_pred -cccccCCC-CchHHHHHCCCCHHHHHHHHHHh-CCCCCCCcccCCHH-----HHHHhcCccccccCCCcccH
Q 008289 303 -KLSKRHGA-TSVGQFREMGYLPQAMVNYLALL-GWGDGTENEFFTLK-----QLVEKFTIERVNKSGAIFDS 367 (571)
Q Consensus 303 -KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~l-G~~~~~~~e~~s~~-----eli~~F~~~~~~~s~~~fd~ 367 (571)
|||||+|. ++++++.+... +........- .++.. +.-... ..+..|+++.-..++..||+
T Consensus 287 ~~mstR~G~~i~l~dllde~~--~~a~~~~~~~~~~~~~---~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 287 VKMSTRKGNVITLDDLLDEAV--ERALEIMEKNPDLSEE---EREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp ESS-TTTTSSTBHHHHHHHHH--HHHHHHHHHHTTCTHC---HHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred ccccCCCCCceEHHHHHHHHH--HHHHHHHhcccCCChh---hHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 99999997 78888866421 1111111111 11110 000011 23567888877778888874
No 62
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.15 E-value=2.3e-10 Score=113.73 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=39.2
Q ss_pred hCCCCCc-EEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCC
Q 008289 283 LGFSMPY-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGW 335 (571)
Q Consensus 283 lg~~~P~-f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~ 335 (571)
.|-+.+. +.|..+ ++.+|+|||||+|+ +++.++.+. |.|++++-|+..-.+
T Consensus 154 ~g~~~~~~~~h~~~-v~~~g~KMSKs~Gn~v~~~dll~~-~~~da~R~~~l~~~~ 206 (213)
T cd00672 154 TGKPFARYWLHTGH-LTIDGEKMSKSLGNFITVRDALKK-YDPEVLRLALLSSHY 206 (213)
T ss_pred hCCCCCcEEEEEEE-EeccCcchhhcCCCccCHHHHHHH-cCHHHHHHHHHhCCc
Confidence 3544444 556654 67899999999998 788998885 999999999876554
No 63
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.14 E-value=2.7e-10 Score=128.00 Aligned_cols=89 Identities=26% Similarity=0.398 Sum_probs=69.1
Q ss_pred CCCCCCcCchhhHHHH-HHHHHHHHH--cCCe---EEEEecCCCcc-------------cCcHHHHHHHHHHHHHcCCCC
Q 008289 61 APSPTGNLHVGGARTA-LFNYLFARS--KGGK---FVLRIEDTDLE-------------RSTKESEEAVLQDLSWLGLDW 121 (571)
Q Consensus 61 APSPtG~LHiG~~rtA-l~n~l~Ar~--~~G~---fiLRieDTD~~-------------R~~~~~~~~i~~~L~wlGl~~ 121 (571)
.|.|||.|||||+++. +....++|. ..|. |+.-+||.+.+ -....+.+.+.++++.||++|
T Consensus 11 ~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~ 90 (556)
T PRK12268 11 WPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKKLGISY 90 (556)
T ss_pred CCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcC
Confidence 5788899999999998 887777774 3344 44455555432 113678899999999999999
Q ss_pred CCCCCCCCCccceecc--ccHHHHHHHHHHHHHcCCccc
Q 008289 122 DEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 122 Degp~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 158 (571)
|.. ++.+ ++.+.-+++.++|.++|.+|.
T Consensus 91 d~~---------~~t~~~~~~~~~~~~~~~L~~~G~~y~ 120 (556)
T PRK12268 91 DLF---------TRTTSPNHHEVVQEFFLKLYENGYIYK 120 (556)
T ss_pred CCC---------cCCCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 963 4555 688899999999999999996
No 64
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.14 E-value=5.3e-10 Score=118.39 Aligned_cols=91 Identities=21% Similarity=0.278 Sum_probs=68.0
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH--cCC---eEEEEecC----CCcc--------------------------cCcHH
Q 008289 61 APSPTGNLHVGGARTALFNYLFARS--KGG---KFVLRIED----TDLE--------------------------RSTKE 105 (571)
Q Consensus 61 APSPtG~LHiG~~rtAl~n~l~Ar~--~~G---~fiLRieD----TD~~--------------------------R~~~~ 105 (571)
+|+|||.+||||+|+.++...++|. ..| .|+.-+|| ++.+ .-.++
T Consensus 9 pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T cd00818 9 PPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALR 88 (338)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHH
Confidence 6899999999999999988888885 234 45555555 3221 11346
Q ss_pred HHHHHHHHHHHcCC--CCCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCccc
Q 008289 106 SEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 106 ~~~~i~~~L~wlGl--~~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 158 (571)
+.+.+.++|+.||+ +||.. |.+ ...++.+.-++..++|.++|++|.
T Consensus 89 ~~~~~~~~~~~lgi~~~~~~~------~~T-~~~~~~~~v~~~f~~L~~~G~iY~ 136 (338)
T cd00818 89 YVDEQEEQFQRLGVWVDWENP------YKT-MDPEYMESVWWVFKQLHEKGLLYR 136 (338)
T ss_pred HHHHHHHHHHHhCceecCCCC------eEC-CCHHHHHHHHHHHHHHHHCCCEec
Confidence 77999999999999 88862 111 233788889999999999999996
No 65
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.13 E-value=2.4e-10 Score=132.85 Aligned_cols=278 Identities=17% Similarity=0.208 Sum_probs=163.3
Q ss_pred eEEEeCCCCCCcCchhhHHH-HHHHHHHHHHc--CCeEEEEecCCCcc----------------cCcHHHHHHHHHHHHH
Q 008289 56 VRVRFAPSPTGNLHVGGART-ALFNYLFARSK--GGKFVLRIEDTDLE----------------RSTKESEEAVLQDLSW 116 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rt-Al~n~l~Ar~~--~G~fiLRieDTD~~----------------R~~~~~~~~i~~~L~w 116 (571)
++|==.|.|||.+||||+++ .|....+||.+ .|.=++-+-.||.- -....+.+.+.+.++|
T Consensus 20 ~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~ 99 (801)
T PLN02610 20 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDW 99 (801)
T ss_pred EEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 44444689999999999995 57789999864 47777777777742 2245666778889999
Q ss_pred cCCCCCCCCCCCCCccceecc--ccHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhCCCCC----C----
Q 008289 117 LGLDWDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPP----V---- 181 (571)
Q Consensus 117 lGl~~Degp~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~----~---- 181 (571)
|||.||.- ++.+ ++.+.-+++..+|.++|..|. -||..++.--- + ....|.-| .
T Consensus 100 l~i~~D~f---------~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~-d-~~v~G~CP~~~C~~~~a 168 (801)
T PLN02610 100 FDISFDKF---------GRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLA-D-RLVEGTCPTEGCNYDSA 168 (801)
T ss_pred cCCccccC---------ccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcc-h-HHhcCcCCccccCcccc
Confidence 99999962 2333 366778888999999999987 44555432110 0 11123211 1
Q ss_pred CCC---cCC-CCCHHHHHHH--HhcCCCceEE------EecCCCCceEEEeec---------ccee---------eccCC
Q 008289 182 YTG---KWA-TATDAEVQKE--LERGTPYTYR------FRVPKGGSLKISDLI---------RGEV---------SWNLD 231 (571)
Q Consensus 182 Y~g---~cr-~l~~~e~~~~--~~~g~~~~iR------~k~~~~~~~~~~D~v---------~G~i---------~~~~~ 231 (571)
|-. .|. .+.+.+.... ...|.+..+| |+++. |.|.+ ++.. .|-..
T Consensus 169 ~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~-----~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~ 243 (801)
T PLN02610 169 RGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPL-----LKDKLVEYINETSVAGGWSQNAIQTTNAWLRD 243 (801)
T ss_pred ccchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHH-----HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhC
Confidence 111 132 1333332210 1134444433 33332 11111 1110 11123
Q ss_pred CCCCeEEEec---------CC---ccccc--------hhhh------Hhhhc-----CCCcEEEeCCCCCCCHHHHHHHH
Q 008289 232 TLGDFVIMRS---------NG---QPVYN--------FCVT------VDDAT-----MAISHVIRAEEHLPNTLRQALIY 280 (571)
Q Consensus 232 ~~~D~Vl~Rs---------dG---~PtY~--------fA~v------VDD~~-----m~ItHVIRG~Dhl~ntp~q~~l~ 280 (571)
.+.|.-|-|. || ...|- ++.. -.++- -.+.|+| |.| +++.|..++
T Consensus 244 gL~d~~IsR~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfi-GKD---i~~fH~i~w 319 (801)
T PLN02610 244 GLKPRCITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFM-GKD---NVPFHTVMF 319 (801)
T ss_pred CCCCcceeeecCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEE-eee---cchhHHHHH
Confidence 5778877774 22 22222 1111 01111 1234666 666 446775444
Q ss_pred ----HHhC--CCCCcEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhc
Q 008289 281 ----KALG--FSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKF 353 (571)
Q Consensus 281 ----~alg--~~~P~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F 353 (571)
-+.| |+.|.-.+..-.++.+|+||||+.|+ +...++.+.+|-+++++.||+.-+ +..++..||.+++++.+
T Consensus 320 Pa~L~a~g~~~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~--p~~~D~dFs~~~f~~~~ 397 (801)
T PLN02610 320 PSTLLGTGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNR--PEVSDTLFTWADLQAKL 397 (801)
T ss_pred HHHHHhCCCCcCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcC--CCCCCCcCCHHHHHHHH
Confidence 4567 45775444333346799999999998 788899888999999999998765 23355778999888766
Q ss_pred Cc
Q 008289 354 TI 355 (571)
Q Consensus 354 ~~ 355 (571)
+-
T Consensus 398 Ns 399 (801)
T PLN02610 398 NS 399 (801)
T ss_pred HH
Confidence 54
No 66
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.07 E-value=9.4e-10 Score=115.32 Aligned_cols=92 Identities=26% Similarity=0.441 Sum_probs=68.3
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCccc-------------CcHHHHHHHHHHHHHcCCCCC
Q 008289 61 APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLER-------------STKESEEAVLQDLSWLGLDWD 122 (571)
Q Consensus 61 APSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDTD~~R-------------~~~~~~~~i~~~L~wlGl~~D 122 (571)
.|.|||.+||||+|+.+...++||. +...|+.-+||.+.+- -.+.+.+.+.++|+.||+..|
T Consensus 8 ~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d 87 (314)
T cd00812 8 FPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD 87 (314)
T ss_pred CCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee
Confidence 5899999999999999988888774 3455777888886532 247888999999999999877
Q ss_pred CCCCCCCCccceeccccHHHHHHHH----HHHHHcCCccc-----ccC
Q 008289 123 EGPGVGGDYGPYRQSERNSLYKQYA----DKLLESGHVYR-----CFC 161 (571)
Q Consensus 123 egp~~~g~~gpy~QSer~~~Y~~~a----~~Li~~G~AY~-----Cfc 161 (571)
-.+ .++.+ .+.|.+.+ .+|.++|.+|. +||
T Consensus 88 ~~~-------~~~t~--~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~ 126 (314)
T cd00812 88 WRR-------EFTTC--DPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC 126 (314)
T ss_pred ccc-------ccccC--CHHHHHHHHHHHHHHHHCCCEEecCceeeee
Confidence 321 22332 33444544 59999999997 666
No 67
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=98.98 E-value=1e-10 Score=126.11 Aligned_cols=274 Identities=23% Similarity=0.335 Sum_probs=140.8
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCc----------------ccCcHHHHHHHHHHHHHcCCCCC
Q 008289 61 APSPTGNLHVGGARTALFNYLFARSK--GGKFVLRIEDTDL----------------ERSTKESEEAVLQDLSWLGLDWD 122 (571)
Q Consensus 61 APSPtG~LHiG~~rtAl~n~l~Ar~~--~G~fiLRieDTD~----------------~R~~~~~~~~i~~~L~wlGl~~D 122 (571)
-|.|+|.|||||+.+.|....+||.+ .|.=++-+.-||. +....++.+.|.+.++.+||++|
T Consensus 7 ~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D 86 (391)
T PF09334_consen 7 IPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYD 86 (391)
T ss_dssp EEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---S
T ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 47899999999999999999999863 3555555555543 33456788999999999999999
Q ss_pred CCCCCCCCccceecc---ccHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhCCCCC------CCCCcC--
Q 008289 123 EGPGVGGDYGPYRQS---ERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPP------VYTGKW-- 186 (571)
Q Consensus 123 egp~~~g~~gpy~QS---er~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~------~Y~g~c-- 186 (571)
. |.++ ++.+.-+++.++|.++|.+|. -||..+|--. .+....|.-| .+...|
T Consensus 87 ~----------F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl--~e~~v~g~CP~C~~~~a~g~~Ce~ 154 (391)
T PF09334_consen 87 R----------FIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFL--PESFVEGTCPYCGSDKARGDQCEN 154 (391)
T ss_dssp E----------EEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE---GGGETCEETTT--SSCTTTEETT
T ss_pred c----------eeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCccc--ccceeeccccCcCccccCCCcccC
Confidence 5 4433 456677888999999999987 3333332110 0011112111 011112
Q ss_pred -CC-CCHHHHHH--HHhcCCCceEE------EecCCCCceEEEeeccce-----------e-eccCCCCCCeEEEecC--
Q 008289 187 -AT-ATDAEVQK--ELERGTPYTYR------FRVPKGGSLKISDLIRGE-----------V-SWNLDTLGDFVIMRSN-- 242 (571)
Q Consensus 187 -r~-l~~~e~~~--~~~~g~~~~iR------~k~~~~~~~~~~D~v~G~-----------i-~~~~~~~~D~Vl~Rsd-- 242 (571)
.. +.++++.+ ....|.+..+| |+++.-. -.+.+.+... + .+-...+.|.-|-+.-
T Consensus 155 cG~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~-~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~W 233 (391)
T PF09334_consen 155 CGRPLEPEELINPVCKICGSPPEVREEENYFFKLSKFR-DQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDW 233 (391)
T ss_dssp TSSBEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGH-HHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSS
T ss_pred CCCCcccccccCCccccccccCccccceEEEEehHHhH-HHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCC
Confidence 11 00000000 00123333333 4443200 0000111111 1 1112246777777531
Q ss_pred Cc--------cccch---------hh--hH--------------hhhcCCCcEEEeCCCCCCCHHHHHHHH----HHhCC
Q 008289 243 GQ--------PVYNF---------CV--TV--------------DDATMAISHVIRAEEHLPNTLRQALIY----KALGF 285 (571)
Q Consensus 243 G~--------PtY~f---------A~--vV--------------DD~~m~ItHVIRG~Dhl~ntp~q~~l~----~alg~ 285 (571)
|. ..|-+ +. .. +|-...+.|+| |.|. ++-|..++ .|+|+
T Consensus 234 GI~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~i-GkDi---~~fH~i~~pa~l~a~~~ 309 (391)
T PF09334_consen 234 GIPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFI-GKDI---IRFHAIYWPAMLLAAGL 309 (391)
T ss_dssp SEEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEE-EGGG---HHHHHTHHHHHHHHCTB
T ss_pred cceeeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEE-ccch---hHHHHHHhHHHHhcccC
Confidence 21 12211 10 01 23334567877 7765 56665444 56788
Q ss_pred CCCcEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcC
Q 008289 286 SMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFT 354 (571)
Q Consensus 286 ~~P~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~ 354 (571)
+.|.-..+.-.+..+|+||||+.|+ +...++.+. |.+++++-||+..+- ...+-.||.+++++.++
T Consensus 310 ~lP~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~~-~~~D~~R~~L~~~~~--~~~d~~F~~~~~~~~~n 376 (391)
T PF09334_consen 310 PLPRRIVVHGFLTLDGEKMSKSRGNVIWPDDLLEE-YGADALRYYLAREGP--EGQDSDFSWEDFIERVN 376 (391)
T ss_dssp ---SEEEEE--EEETTCCEETTTTESSBHHHHHHH-H-HHHHHHHHHHHSS--TTS-EEE-HHHHHHHHH
T ss_pred CCCCEEEeeeeEEECCeeccccCCcccCHHHHHHh-CChHHHHHHHHHhcC--CCCCCCCCHHHHHHHHH
Confidence 8886433222233489999999986 888888888 899999999998774 23456789988887554
No 68
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=98.90 E-value=5.1e-08 Score=115.10 Aligned_cols=89 Identities=28% Similarity=0.408 Sum_probs=70.5
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc------------------cC--------------cHHH
Q 008289 61 APSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE------------------RS--------------TKES 106 (571)
Q Consensus 61 APSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~------------------R~--------------~~~~ 106 (571)
+|.+||.|||||+++.++-..+||. ..|.-++.+-.+|.. +. +.++
T Consensus 41 pPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~ 120 (861)
T TIGR00422 41 PPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEES 120 (861)
T ss_pred CCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHH
Confidence 6799999999999999999999986 568888888888752 10 4567
Q ss_pred HHHHHHHHHHcCCC--CCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCccc
Q 008289 107 EEAVLQDLSWLGLD--WDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 107 ~~~i~~~L~wlGl~--~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (571)
.+.|.+.++.||+. |+. +|+..+ +.+.-+....+|.++|.+|+
T Consensus 121 ~~~~~~~~~~lG~s~Dw~r---------~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 167 (861)
T TIGR00422 121 GGTIKNQIKRLGASLDWSR---------ERFTMDEGLSKAVKEAFVRLYEKGLIYR 167 (861)
T ss_pred HHHHHHHHHHhCeeeecCC---------CcCcCCHHHHHHHHHHHHHHHHCCCeee
Confidence 88999999999965 543 455543 55566777888999999997
No 69
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=98.84 E-value=7.1e-08 Score=113.05 Aligned_cols=95 Identities=23% Similarity=0.320 Sum_probs=71.2
Q ss_pred ceEEEe-CCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCc-----------------c------------cC
Q 008289 55 QVRVRF-APSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL-----------------E------------RS 102 (571)
Q Consensus 55 ~vr~RF-APSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~-----------------~------------R~ 102 (571)
+..+=. .|.|||.|||||+++.+....+||. ..|.-++.+-.+|. + .-
T Consensus 39 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~ 118 (800)
T PRK13208 39 VYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCREL 118 (800)
T ss_pred cEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 344555 7899999999999999999999996 46877777555542 2 13
Q ss_pred cHHHHHHHHHHHHHcCCC--CCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCccc
Q 008289 103 TKESEEAVLQDLSWLGLD--WDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 103 ~~~~~~~i~~~L~wlGl~--~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (571)
..++.+.|.++++.||+. |+. +|+.++ +.+.-+....+|.++|.+|+
T Consensus 119 ~~~~~~~~~~~~~~lg~s~Dw~~---------~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 169 (800)
T PRK13208 119 TDEDEKKFRELWRRLGLSVDWSL---------EYQTISPEYRRISQKSFLDLYKKGLIYR 169 (800)
T ss_pred HHHHHHHHHHHHHHhCeeeccCC---------CcccCCHHHHHHHHHHHHHHHHCCCeee
Confidence 456889999999999985 544 344443 45556677788999999997
No 70
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=98.75 E-value=4.9e-07 Score=107.00 Aligned_cols=94 Identities=26% Similarity=0.402 Sum_probs=72.5
Q ss_pred eEEEe-CCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc------------------cC------------
Q 008289 56 VRVRF-APSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE------------------RS------------ 102 (571)
Q Consensus 56 vr~RF-APSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~------------------R~------------ 102 (571)
..+=. +|.+||.|||||+++.++-..++|. ..|.-+|.+-.||.. +.
T Consensus 38 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~ 117 (874)
T PRK05729 38 FSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVW 117 (874)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHH
Confidence 44444 6799999999999999999999986 458888888777752 10
Q ss_pred --cHHHHHHHHHHHHHcCCC--CCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCccc
Q 008289 103 --TKESEEAVLQDLSWLGLD--WDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 103 --~~~~~~~i~~~L~wlGl~--~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (571)
..++.+.|.+.++.||+. |+. +|+..+ +...-+....+|.++|.+|+
T Consensus 118 ~w~~~~~~~~~~~~~~lG~s~Dw~r---------~~~T~d~~~~~~v~~~F~~L~~~GlIyr 170 (874)
T PRK05729 118 EWKEESGGTITNQLRRLGASCDWSR---------ERFTMDEGLSKAVREVFVRLYEKGLIYR 170 (874)
T ss_pred HHHHHHHHHHHHHHHHhCcceecCC---------CcccCCHHHHHHHHHHHHHHHHCCCEee
Confidence 356779999999999965 654 455543 55566777888999999997
No 71
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.70 E-value=5.7e-08 Score=102.83 Aligned_cols=236 Identities=18% Similarity=0.232 Sum_probs=114.3
Q ss_pred CCceEEEeCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcccCc------------------------
Q 008289 53 DGQVRVRFAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLERST------------------------ 103 (571)
Q Consensus 53 ~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDTD~~R~~------------------------ 103 (571)
+..+++-=.-||+|..||||+|-.+..++.+|. ..-+||+=-||-|+=|.+
T Consensus 22 ~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~ 101 (360)
T PF01921_consen 22 KEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPF 101 (360)
T ss_dssp -SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TT
T ss_pred CccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCC
Confidence 345666666799999999999999988888875 335699999999987653
Q ss_pred -------HHHHHHHHHHHHHcCCCCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHH
Q 008289 104 -------KESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAK 174 (571)
Q Consensus 104 -------~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~ 174 (571)
+-+...+.+.|+.||++++ .++|++ |...|.+.+...+++ ++++.+.=..-.
T Consensus 102 G~~~SyaeH~~~~~~~~L~~~gie~e----------~~s~te~Y~sG~y~~~i~~aL~~---------~~~I~~Il~~~~ 162 (360)
T PF01921_consen 102 GCHESYAEHFNAPFEEFLDEFGIEYE----------FISQTEMYRSGRYDEQIRTALEN---------RDEIREILNEYR 162 (360)
T ss_dssp SSSSCHHHHHHHHHHHHHHTTT---E----------EEECCCCCCTTTTHHHHCHHHHT---------HHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHcCCceE----------EEeHHHhhhCCchHHHHHHHHHh---------HHHHHHHHHHhc
Confidence 3566778888999999765 578887 555788888777765 233333222111
Q ss_pred hCCCCC------CCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeeccce---eeccCCCCCCeEEEecCCcc
Q 008289 175 LKQLPP------VYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGE---VSWNLDTLGDFVIMRSNGQP 245 (571)
Q Consensus 175 ~~~~~~------~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~---i~~~~~~~~D~Vl~RsdG~P 245 (571)
.+..+. .++..|.... ...++.+.. +.+++.|.+--.|. +.+.. .+|--
T Consensus 163 ~~~~~~~y~Pf~piC~~cGri~-----------tt~v~~~d~-~~~~v~Y~c~~cG~~g~~~i~~----------g~gKL 220 (360)
T PF01921_consen 163 GRERPETYSPFLPICEKCGRID-----------TTEVTEYDP-EGGTVTYRCEECGHEGEVDITG----------GNGKL 220 (360)
T ss_dssp HHT--TT--SEEEEETTTEE-------------EEEEEEE---SSSEEEEE--TTS---EEETTT----------T-EEE
T ss_pred CcCCCCCeeeeeeeccccCCcc-----------cceeeEeec-CCCEEEEEecCCCCEEEEecCC----------Ccccc
Confidence 111111 2333443210 011122221 13455555422221 11111 11222
Q ss_pred ccchhhhHhhhcCCCcEEEeCCCCCC---CHHHHHHHH-HHhCCCCCcEEEeeeeecCCCCcccccCCC-CchHHHHHCC
Q 008289 246 VYNFCVTVDDATMAISHVIRAEEHLP---NTLRQALIY-KALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMG 320 (571)
Q Consensus 246 tY~fA~vVDD~~m~ItHVIRG~Dhl~---ntp~q~~l~-~alg~~~P~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G 320 (571)
.|-.-=+--=...||+-=--|.||.+ |...-..|. +.||+++|...-+.+++...|.||||++|+ +|+++..+-
T Consensus 221 ~WkvDW~mRW~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~- 299 (360)
T PF01921_consen 221 QWKVDWPMRWAALGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGNGITPEEWLEY- 299 (360)
T ss_dssp -HHHHHHHHHHHTT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES--------------HHHHHTT-
T ss_pred cCCCcChhhhhhcCceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCCccCHHHHHHh-
Confidence 22111111123356776667999998 877777888 799999999999999999888899999998 688877654
Q ss_pred CCHHHHHHHH
Q 008289 321 YLPQAMVNYL 330 (571)
Q Consensus 321 ~~Peai~n~l 330 (571)
+.||.|+-|+
T Consensus 300 ~~PE~lr~l~ 309 (360)
T PF01921_consen 300 APPESLRYLM 309 (360)
T ss_dssp S-HHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 3556555544
No 72
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=98.38 E-value=2e-05 Score=83.50 Aligned_cols=190 Identities=17% Similarity=0.174 Sum_probs=121.1
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCC----Ccc----cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccce
Q 008289 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDT----DLE----RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (571)
Q Consensus 63 SPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDT----D~~----R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy 134 (571)
.|||.+||||.-+++.+|..- +.|.+.++=|-|- +.. .......+.+..++--+||+++.. -.|
T Consensus 10 ~PTG~~HlG~~l~~~~~~~~~-q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~-------~if 81 (328)
T TIGR00233 10 QPSGKMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKT-------FIF 81 (328)
T ss_pred CCCcHhHHHHHHHHHHHHHHH-hCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhhe-------EEE
Confidence 588999999999999999887 6676665555552 221 123445566677788899999864 268
Q ss_pred eccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCC
Q 008289 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGG 214 (571)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~ 214 (571)
.||+-.+.+ +.+-. .-|.+|-.++..+ +.|.++
T Consensus 82 ~qS~~~e~~-el~~~-------l~~~~t~~~l~r~----------~~~k~k----------------------------- 114 (328)
T TIGR00233 82 LQSDYPEHY-ELAWL-------LSCQVTFGELKRM----------TQFKDK----------------------------- 114 (328)
T ss_pred EcCCcHHHH-HHHHH-------HHccCCHHHHHhc----------cCcchh-----------------------------
Confidence 999987533 33322 3577777766421 122110
Q ss_pred ceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhC------CCCC
Q 008289 215 SLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG------FSMP 288 (571)
Q Consensus 215 ~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg------~~~P 288 (571)
..+ +.. +-|.-+|-.=-+.|-...+.++|.-|.|-...--.=.-+.+.|| +..|
T Consensus 115 -------~~~----~~~---------~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P 174 (328)
T TIGR00233 115 -------SQA----ENV---------PIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKP 174 (328)
T ss_pred -------ccC----CCC---------CchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCC
Confidence 000 000 11445555555556667788899999997533222234446677 6778
Q ss_pred cEEE---eeeeecCCCCcccccCCC--CchHHHHHCCCCHHHHHHHHHHh
Q 008289 289 YFAH---VSLILAPDRSKLSKRHGA--TSVGQFREMGYLPQAMVNYLALL 333 (571)
Q Consensus 289 ~f~H---~pli~~~~g~KLSKR~g~--~~v~~~r~~G~~Peai~n~l~~l 333 (571)
...| +|.|.+.+|+||||+.++ +.|.+ .|+.|..-+...
T Consensus 175 ~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D------~~e~I~~KI~~a 218 (328)
T TIGR00233 175 ESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD------TPKQIKKKIRKA 218 (328)
T ss_pred hhhhccccCCCCCCCCCcCCCCCCCCeEeecC------CHHHHHHHHHhc
Confidence 7766 366788788999999875 44544 788888887654
No 73
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=98.37 E-value=2.6e-05 Score=82.71 Aligned_cols=199 Identities=20% Similarity=0.266 Sum_probs=115.8
Q ss_pred CCCCcCchhhHHHHHHHHHHHHH-cCCeEEEEecCC---CcccC---cHHHHHHHHHHHHHcCCCCCCCCCCCCCcccee
Q 008289 63 SPTGNLHVGGARTALFNYLFARS-KGGKFVLRIEDT---DLERS---TKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYR 135 (571)
Q Consensus 63 SPtG~LHiG~~rtAl~n~l~Ar~-~~G~fiLRieDT---D~~R~---~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~ 135 (571)
-|||.+||||.-.|+-||..-.+ +|.+.+.=|-|. ..... ..+....+..++--+||+++.- ..|.
T Consensus 11 qPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~-------~if~ 83 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDV-------IFYR 83 (332)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccce-------EEEE
Confidence 47899999999999999976644 454443334442 10112 2344445666777899999864 2789
Q ss_pred ccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCc
Q 008289 136 QSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGS 215 (571)
Q Consensus 136 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~ 215 (571)
||+-.+.+ +.+- ...|.++-.+|+.+.. |-.+ .+..+ ..|.
T Consensus 84 qS~v~~~~-eL~~-------il~~~t~~g~L~R~~~----------~K~k---~~~~~-----~~~~------------- 124 (332)
T PRK12556 84 QSDVPEIF-ELAW-------ILSCLTPKGLMNRAHA----------YKAK---VDQNK-----EAGL------------- 124 (332)
T ss_pred CCCchHHH-HHHH-------HHHccchHHHHHhccH----------HHHH---Hhhhh-----hhcc-------------
Confidence 99976543 2222 2468888777765421 1000 00000 0000
Q ss_pred eEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhC------CCCCc
Q 008289 216 LKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG------FSMPY 289 (571)
Q Consensus 216 ~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg------~~~P~ 289 (571)
.+ +.. + +-|.-+|-.--+.|-.+.+.+||.-|+|-...--.-.-+.+.|| +..|.
T Consensus 125 -~~----------~~~-----~---~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~ 185 (332)
T PRK12556 125 -DL----------DAG-----V---NMGLYTYPILMAADILLFQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLPE 185 (332)
T ss_pred -cc----------CCC-----C---cchhhhchHHHhhhhhhccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCce
Confidence 00 000 0 11445555555556667788999999996532222223334565 55675
Q ss_pred EE---EeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHH
Q 008289 290 FA---HVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 290 f~---H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~ 332 (571)
.. |.+++.+-+|+||||+.++ +.+.+ .|+.|..-+..
T Consensus 186 ~~~~~~~~~l~gLdg~KMSKS~~n~I~L~D------~p~~I~kKI~k 226 (332)
T PRK12556 186 YVIQEEGAILPGLDGRKMSKSYGNVIPLFA------EQEKLRKLIFK 226 (332)
T ss_pred eccccccccccCCCCCCCCCCCCCcccccC------CHHHHHHHHHH
Confidence 54 7888888899999999875 33432 68887776654
No 74
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.35 E-value=3.2e-05 Score=83.00 Aligned_cols=185 Identities=21% Similarity=0.205 Sum_probs=114.8
Q ss_pred CCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCC----Ccc---cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccce
Q 008289 62 PSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDT----DLE---RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (571)
Q Consensus 62 PSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDT----D~~---R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy 134 (571)
=.|||.+||||.- ++.++..-...|...++-|-|- +.. .........++.++-.+|++++.. ..|
T Consensus 73 ~~PSG~lHLGh~~-~~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~-------~i~ 144 (368)
T PRK12285 73 FMPSGPMHIGHKM-VFDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKT-------EIY 144 (368)
T ss_pred cCCCCCccHHHHH-HHHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccce-------EEE
Confidence 3456999999985 5666666666777877777774 211 123344455777888999999864 268
Q ss_pred eccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCC
Q 008289 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGG 214 (571)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~ 214 (571)
.||+..+.| +.+-.| .|.+|-.+++.+ ..|..
T Consensus 145 ~qS~~~~~~-~l~~~l-------~~~~t~~~l~r~----------~~f~~------------------------------ 176 (368)
T PRK12285 145 FQSENIKVY-DLAFEL-------AKKVNFSELKAI----------YGFTG------------------------------ 176 (368)
T ss_pred ECCchHHHH-HHHHHH-------HhhCcHHHHHHh----------hCCCC------------------------------
Confidence 999988744 444444 455565555321 01100
Q ss_pred ceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhc------CCCcEEEeCCCCCCCHHHHHHHHHHh----C
Q 008289 215 SLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDAT------MAISHVIRAEEHLPNTLRQALIYKAL----G 284 (571)
Q Consensus 215 ~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~------m~ItHVIRG~Dhl~ntp~q~~l~~al----g 284 (571)
.+ +-|..+|-.--+.|-.+ .+-++|.-|.|-..+--.-.-+.+.| |
T Consensus 177 ~~------------------------~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~g 232 (368)
T PRK12285 177 ET------------------------NIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHGGYG 232 (368)
T ss_pred CC------------------------chhhhhhhHHHHHHHHhhcccccCCceEEEeccchHHHHHHHHHHHHHHhhhcC
Confidence 00 01223333222222222 35578889998653222223344566 9
Q ss_pred CCCCcEEEeeeeecCCCCcccccCCC--CchHHHHHCCCCHHHHHHHHHH
Q 008289 285 FSMPYFAHVSLILAPDRSKLSKRHGA--TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 285 ~~~P~f~H~pli~~~~g~KLSKR~g~--~~v~~~r~~G~~Peai~n~l~~ 332 (571)
+..|.-.|.++|.+.+|+||||+... +.+.+ .|+.|.+-+..
T Consensus 233 f~~P~~l~~~~lpgL~G~KMSkS~~~s~I~L~D------~p~~I~kKI~k 276 (368)
T PRK12285 233 FIKPSSTYHKFMPGLTGGKMSSSKPESAIYLTD------DPETVKKKIMK 276 (368)
T ss_pred CCCchhHhhhcccCCCCCcCCCCCCCCeeeccC------CHHHHHHHHHh
Confidence 99999888899889999999999853 55554 78888888876
No 75
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=98.28 E-value=3.4e-05 Score=81.72 Aligned_cols=219 Identities=16% Similarity=0.149 Sum_probs=133.0
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCC----Cc---ccCcHHHHHHHHHHHHHcCCCCCCCCCCC
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDT----DL---ERSTKESEEAVLQDLSWLGLDWDEGPGVG 128 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDT----D~---~R~~~~~~~~i~~~L~wlGl~~Degp~~~ 128 (571)
.++=..=.|||.+||||+- ++.+|..-...|.+.++=|-|. +. ..........+..++.-+|++++.-
T Consensus 31 ~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~---- 105 (329)
T PRK08560 31 PKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKT---- 105 (329)
T ss_pred CEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhhe----
Confidence 3343444688999999966 7777777766677766666663 21 1234455667788888899998753
Q ss_pred CCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEE
Q 008289 129 GDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRF 208 (571)
Q Consensus 129 g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~ 208 (571)
..+.||+-.... ++...++. ..|.+|-.++...... + |.
T Consensus 106 ---~i~~qS~~~~~~-~~~~~~~~----l~~~~~~~~l~r~~~~---------~------------------~~------ 144 (329)
T PRK08560 106 ---EFVLGSEFQLDK-EYWLLVLK----LAKNTTLARARRSMTI---------M------------------GR------ 144 (329)
T ss_pred ---EEEecchhhccc-hHHHHHHH----HHhhccHHHHHHhhhh---------h------------------cc------
Confidence 258899754322 12222222 2466666665432100 0 00
Q ss_pred ecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCC
Q 008289 209 RVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMP 288 (571)
Q Consensus 209 k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P 288 (571)
. + ++ + +-|.-+|-.--+.|=...+.++|+-|.|-..+--.=.-+.+.+|...|
T Consensus 145 ---~-----------~---------~~-~---~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~~l~Rdia~~~n~~~p 197 (329)
T PRK08560 145 ---R-----------M---------EE-P---DVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHMLAREVLPKLGYKKP 197 (329)
T ss_pred ---c-----------C---------CC-C---CHHHHHHHHHHHHHHHHhCCCEEEechhHHHHHHHHHHhhHhcCCCCc
Confidence 0 0 00 0 224456666666677778899999999866433222345567888889
Q ss_pred cEEEeeeeecCCCC--cccccC-CC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcC
Q 008289 289 YFAHVSLILAPDRS--KLSKRH-GA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFT 354 (571)
Q Consensus 289 ~f~H~pli~~~~g~--KLSKR~-g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~ 354 (571)
.-.+.|+|.+.+|. ||||+. ++ +.+.+ .|+.|..-+... ++++...+.-.+=++.+.|.
T Consensus 198 ~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D------~~~~I~~KI~kA-~t~~~~~~~n~v~~~~~~~~ 260 (329)
T PRK08560 198 VCIHTPLLTGLDGGGIKMSKSKPGSAIFVHD------SPEEIRRKIKKA-YCPPGEVEGNPVLEIAKYHI 260 (329)
T ss_pred eEEEcCccCCCCCCCCCCcCCCCCCeecccC------CHHHHHHHHHhc-cCCCCCcCCCcHHHHHHHHh
Confidence 88899999998887 999998 43 55544 688887777652 23332223334445555554
No 76
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=98.24 E-value=2.7e-05 Score=82.64 Aligned_cols=194 Identities=19% Similarity=0.238 Sum_probs=116.2
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcc------cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccceec
Q 008289 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLE------RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQ 136 (571)
Q Consensus 63 SPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~------R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~Q 136 (571)
.|||.+||||.-.++.+|..-...+..+++--|+.-.. ....++...+..++.-+|++++.- -.|.|
T Consensus 10 ~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~-------~i~~q 82 (333)
T PRK12282 10 RPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKS-------TIFIQ 82 (333)
T ss_pred CCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHe-------EEEEC
Confidence 36799999999999999977766666666643332111 123345555666777899998743 26889
Q ss_pred cccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCce
Q 008289 137 SERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSL 216 (571)
Q Consensus 137 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~ 216 (571)
|+-.+.++ .. ..+.|.++-.++..+-. ++++. +. +... ..+
T Consensus 83 S~~~e~~~-l~-------~~l~~~~~~~~l~r~~~----------------------~k~~~--~~-----~~~~--~~~ 123 (333)
T PRK12282 83 SQIPELAE-LT-------MYYMNLVTVARLERNPT----------------------VKTEI--AQ-----KGFG--RSI 123 (333)
T ss_pred CcchHHHH-HH-------HHHHhhchHHHHhhchH----------------------HHHHH--hc-----cCCC--CCC
Confidence 99866442 22 12667777776642211 00000 00 0000 000
Q ss_pred EEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhC--CCCCcEE---
Q 008289 217 KISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG--FSMPYFA--- 291 (571)
Q Consensus 217 ~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg--~~~P~f~--- 291 (571)
+-|..+|-.--+.|-...+.++|.-|.|-..+--.-.-+.+.|| +..|.|.
T Consensus 124 ------------------------~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~ 179 (333)
T PRK12282 124 ------------------------PAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPE 179 (333)
T ss_pred ------------------------cchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCch
Confidence 11456666666667677889999999996532222233445566 3334333
Q ss_pred ----EeeeeecCCC-CcccccCCC-CchHHHHHCCCCHHHHHHHHHH
Q 008289 292 ----HVSLILAPDR-SKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 292 ----H~pli~~~~g-~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~ 332 (571)
|.|+|.+-+| +||||+.++ +.+.+ .|+.|..-+..
T Consensus 180 ~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D------~pe~I~kKI~~ 220 (333)
T PRK12282 180 ALLPEAGRLPGLDGKAKMSKSLGNAIYLSD------DADTIKKKVMS 220 (333)
T ss_pred hcccCCCcccCCCCCCcCCCCCCCeeeeeC------CHHHHHHHHHh
Confidence 5678888777 799999875 44443 78888888765
No 77
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=0.00013 Score=76.33 Aligned_cols=197 Identities=20% Similarity=0.230 Sum_probs=125.3
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCC----Ccc----cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccce
Q 008289 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDT----DLE----RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (571)
Q Consensus 63 SPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDT----D~~----R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy 134 (571)
-|||.|||||--.|+.||......++..+.=|-|- .+. .....+...+..++=-+||+++.. -.|
T Consensus 13 ~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~-------~if 85 (314)
T COG0180 13 QPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKS-------TIF 85 (314)
T ss_pred CCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCcccc-------EEE
Confidence 59999999999999999999888766666666662 222 335677777777888899999974 279
Q ss_pred eccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCC
Q 008289 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGG 214 (571)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~ 214 (571)
.||+..+.+ +.+-. +-|.-+-.+++++ +.|..+-. ..+. .++
T Consensus 86 ~QS~v~e~~-eLa~~-------l~~~~~~gel~r~----------~~fKdk~~-----------~~~~------~~~--- 127 (314)
T COG0180 86 LQSEVPEHA-ELAWL-------LSCVTNFGELERM----------TQFKDKSA-----------KKGE------SIP--- 127 (314)
T ss_pred EccCchHHH-HHHHH-------HHccCcHHHHHhh----------cCcchhhh-----------cccc------ccc---
Confidence 999998855 44433 3577777777653 22311100 0000 011
Q ss_pred ceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhC------CCCC
Q 008289 215 SLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG------FSMP 288 (571)
Q Consensus 215 ~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg------~~~P 288 (571)
-|.-+|----+-|-.+-+-++|=-|+|-...--...-|.+.|+ +..|
T Consensus 128 ---------------------------~Gl~~YPvlqAADILl~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P 180 (314)
T COG0180 128 ---------------------------IGLLTYPVLQAADILLYQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLP 180 (314)
T ss_pred ---------------------------ccchhccHHHHHHhhhccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCc
Confidence 1222332222223233355666679997755555556667787 7778
Q ss_pred cEEEee--eeecCCC-CcccccCCCCchHHHHHCCCCHHHHHHHHHHhCC
Q 008289 289 YFAHVS--LILAPDR-SKLSKRHGATSVGQFREMGYLPQAMVNYLALLGW 335 (571)
Q Consensus 289 ~f~H~p--li~~~~g-~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~ 335 (571)
...+.. .|.+-+| +||||+.++..| .|- =.|+.+..-+...-.
T Consensus 181 ~~~~~~~~~i~gL~g~~KMSkS~~ns~I-~L~---D~~~~i~kKI~~~~t 226 (314)
T COG0180 181 EALISKVARLPGLDGPGKMSKSDPNSAI-FLL---DDPKTIRKKIKKAAT 226 (314)
T ss_pred cccccCCCcccCCCCCCcccccCCCCee-ecc---CCHHHHHHHHHHhcc
Confidence 766555 8888888 899999988332 121 268888887766444
No 78
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=3.6e-05 Score=82.06 Aligned_cols=87 Identities=21% Similarity=0.330 Sum_probs=67.4
Q ss_pred CCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc------------cCcHHHHHHHHHHHH----HcCCCCCCC
Q 008289 63 SPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE------------RSTKESEEAVLQDLS----WLGLDWDEG 124 (571)
Q Consensus 63 SPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~------------R~~~~~~~~i~~~L~----wlGl~~Deg 124 (571)
.|+-.+||||++++|....+||. ..|+-+.=+..||.- |+-++..+.|-..+. -+||.++.-
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~F 128 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTKF 128 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhhe
Confidence 67899999999999999999996 458877788889862 445566665555444 458888762
Q ss_pred CCCCCCccceeccc--cHHHHHHHHHHHHHcCCccc
Q 008289 125 PGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 125 p~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (571)
.|.++ +...-+++-..+.++|..|.
T Consensus 129 ---------IRTTdpkH~a~Vqefw~~~~knG~iy~ 155 (578)
T KOG0436|consen 129 ---------IRTTDPKHEAIVQEFWARVFKNGDIYR 155 (578)
T ss_pred ---------eecCCchHHHHHHHHHHHHHhCCceee
Confidence 45554 67788889999999999997
No 79
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.07 E-value=0.00012 Score=75.52 Aligned_cols=195 Identities=16% Similarity=0.131 Sum_probs=120.4
Q ss_pred CCCC-cCchhhHHHHHHHHHHHHHcCCeEEEEecC-----CCcc-----c------CcHHHHHHHHHHHHHcCCC--CCC
Q 008289 63 SPTG-NLHVGGARTALFNYLFARSKGGKFVLRIED-----TDLE-----R------STKESEEAVLQDLSWLGLD--WDE 123 (571)
Q Consensus 63 SPtG-~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD-----TD~~-----R------~~~~~~~~i~~~L~wlGl~--~De 123 (571)
.||| .+||||.-.++ ++..-...|...+.=|-| .|+. | ......+.+..++.-+|++ ++.
T Consensus 8 ~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k 86 (269)
T cd00805 8 DPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEK 86 (269)
T ss_pred CCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 4889 99999988755 444444456666665655 2332 2 1345566788889999986 332
Q ss_pred CCCCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCC
Q 008289 124 GPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTP 203 (571)
Q Consensus 124 gp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~ 203 (571)
...+.||+-.+. .+...+++ +-|+|+-.++...-. +..+...+.
T Consensus 87 -------~~i~~~s~~~~~--l~~~~~l~----l~~~~~~~~l~~~~~----------------------~k~r~~~~~- 130 (269)
T cd00805 87 -------AKFVNNSDWLLS--LYTLDFLR----LGKHFTVNRMLRRDA----------------------VKVRLEEEE- 130 (269)
T ss_pred -------eEEEEchHhhcc--CCHHHHHH----HHhhCcHHHHHHHHH----------------------HHHHHhcCC-
Confidence 247889976553 12222222 567888777754321 000000000
Q ss_pred ceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHh
Q 008289 204 YTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKAL 283 (571)
Q Consensus 204 ~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~al 283 (571)
.+ +=|..+|-.--+.|=...+.++|+-|.|-..+--.-.-+.+.+
T Consensus 131 -----------~~------------------------~~~~~~YP~lQaaDi~~l~~~l~~~G~DQ~~~i~~~rd~a~r~ 175 (269)
T cd00805 131 -----------GI------------------------SFSEFIYPLLQAYDFVYLDVDLQLGGSDQRGNITLGRDLIRKL 175 (269)
T ss_pred -----------CC------------------------cHHHHHHHHHHHhhHHHHhCCeeEecHHHHHHHHHHHHHHHHh
Confidence 00 1122344444444555566799999999887766667777888
Q ss_pred CCCCCcEEEeeeeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHH
Q 008289 284 GFSMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 284 g~~~P~f~H~pli~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~ 332 (571)
++..|.-.|.|+|.+.+|.||||+.++..-..+ =-.|+.|.+++..
T Consensus 176 ~~~~~~~l~~~ll~~l~G~KMSKS~~~~~~i~l---~dsp~~i~~Ki~~ 221 (269)
T cd00805 176 GYKKVVGLTTPLLTGLDGGKMSKSEGNAIWDPV---LDSPYDVYQKIRN 221 (269)
T ss_pred CCCCcEEEeeccccCCCCCcccCCCCCcccccC---CCCHHHHHHHHHc
Confidence 998888889999999999999999876430111 1267777777754
No 80
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=97.92 E-value=6.6e-05 Score=89.05 Aligned_cols=130 Identities=22% Similarity=0.317 Sum_probs=90.6
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------------------------------
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE--------------------------------- 100 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~--------------------------------- 100 (571)
+.+=-+|.|||.|||||+++.++-..+||. ..|.-++.+-..|..
T Consensus 39 ~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~ 118 (861)
T TIGR00392 39 IFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCR 118 (861)
T ss_pred EEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHH
Confidence 555567899999999999999999999986 457777766555431
Q ss_pred cCcHHHHHHHHHHHHHcCC--CCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhC
Q 008289 101 RSTKESEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLK 176 (571)
Q Consensus 101 R~~~~~~~~i~~~L~wlGl--~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~ 176 (571)
..+.++++.+.+.++.||+ +||. +|...+ ..+.-+....+|.++|.+|+..
T Consensus 119 ~~~~~~~~~~~~~~~~lG~~~dw~~---------~y~T~~p~y~~~~~~~f~~l~~~gliyr~~---------------- 173 (861)
T TIGR00392 119 EFALKQIEEQREQFQRLGVWGDWEN---------PYKTMDPSYEESQWWLFKEAHEKGLLYRGL---------------- 173 (861)
T ss_pred HHHHHHHHHHHHHHHHhCceecCCC---------CcCcCCHHHHHHHHHHHHHHHHCCCEeecc----------------
Confidence 1133568889999999998 7886 455554 3344455677899999999632
Q ss_pred CCCCCCCCcCCC-CCHHHHHHHH----hcCCCceEEEecC
Q 008289 177 QLPPVYTGKWAT-ATDAEVQKEL----ERGTPYTYRFRVP 211 (571)
Q Consensus 177 ~~~~~Y~g~cr~-l~~~e~~~~~----~~g~~~~iR~k~~ 211 (571)
.+-.|+-.|.. ++..|+...- ..+....++|++.
T Consensus 174 -~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~ 212 (861)
T TIGR00392 174 -KPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPVK 212 (861)
T ss_pred -eeeecCCCcCCcccHHHHhcccccccccCceEEEEEEec
Confidence 24457767754 7888875431 1233455777763
No 81
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.91 E-value=0.00061 Score=70.47 Aligned_cols=194 Identities=15% Similarity=0.151 Sum_probs=111.6
Q ss_pred CCCC-cCchhhHHHHHHHHHHHHHcCCeEEEEecC-----CCc-----------ccCcHHHHHHHHHHHHHcCCCCCCCC
Q 008289 63 SPTG-NLHVGGARTALFNYLFARSKGGKFVLRIED-----TDL-----------ERSTKESEEAVLQDLSWLGLDWDEGP 125 (571)
Q Consensus 63 SPtG-~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD-----TD~-----------~R~~~~~~~~i~~~L~wlGl~~Degp 125 (571)
-||| .|||||.-. +.++..-...|.+.++=|-| .|+ .....+..+.|..++..+|++++ |
T Consensus 7 ~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d~~--p 83 (273)
T cd00395 7 DPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIFED--P 83 (273)
T ss_pred cCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCcCC--C
Confidence 4889 799999888 77777766656554443322 133 12234455677788999999833 1
Q ss_pred CCCCCccceeccccHHH--HHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCC
Q 008289 126 GVGGDYGPYRQSERNSL--YKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTP 203 (571)
Q Consensus 126 ~~~g~~gpy~QSer~~~--Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~ 203 (571)
. ....|.||+-... |.+.+..| -|.++-.++..+- .+..++..|.
T Consensus 84 ~---k~~i~~ns~~~~~~~~~~l~~~l-------~~~~~~~~l~~~~----------------------~~k~r~~~~~- 130 (273)
T cd00395 84 T---QATLFNNSDWPGPLAHIQFLRDL-------GKHVYVNYMERKT----------------------SFQSRSEEGI- 130 (273)
T ss_pred c---ceEEEEccccCCcccHHHHHHHH-------HccCcHHHHHhCh----------------------HHHHHhcCCC-
Confidence 1 1236889987631 32333332 3555555543211 0111110110
Q ss_pred ceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhc----CCCcEEEeCCCCCCCHHHHHHH
Q 008289 204 YTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDAT----MAISHVIRAEEHLPNTLRQALI 279 (571)
Q Consensus 204 ~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~----m~ItHVIRG~Dhl~ntp~q~~l 279 (571)
+=|..+|-.=-+.|=.. .+.++|+-|.|-..+--.=+-+
T Consensus 131 -------------------------------------~~~~~~Yp~lQaaD~l~l~~~~~~~~vp~G~DQ~~~i~l~rdl 173 (273)
T cd00395 131 -------------------------------------SATEFTYPPLQAADFLLLNTTEGCDIQPGGSDQWGNITLGREL 173 (273)
T ss_pred -------------------------------------CchhhhhHHHHHHHHHHHhcccCCcEEEecHHHHHHHHHHHHH
Confidence 11223333333333222 4559999999977655444555
Q ss_pred HHHhC-CCCCcEEEeeeeecCCCCcccccCCCCc-hHHHHHCCCCHHHHHHHHHH
Q 008289 280 YKALG-FSMPYFAHVSLILAPDRSKLSKRHGATS-VGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 280 ~~alg-~~~P~f~H~pli~~~~g~KLSKR~g~~~-v~~~r~~G~~Peai~n~l~~ 332 (571)
.+.++ ++.|.-.+.|+|.+.+|.||||+.++.. +..+ --.|+.+..++..
T Consensus 174 a~r~n~~~~p~~l~~p~l~~l~G~KMSKS~~~~i~l~~~---~dsp~~i~~ki~~ 225 (273)
T cd00395 174 ARRFNGFTIAEGLTIPLVTKLDGPKFGKSESGPKWLDTE---KTSPYEFYQFWIN 225 (273)
T ss_pred HHHhCCCCCCeEEeeccccCCCCCcCCCCCCCCcccccc---CCCHHHHHHHHHc
Confidence 66775 6788888889999999999999987642 2211 1257777777643
No 82
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.90 E-value=0.00018 Score=77.66 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=59.8
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc---cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCcccee
Q 008289 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE---RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYR 135 (571)
Q Consensus 63 SPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD----TD~~---R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~ 135 (571)
-|||.+||||.-.++-||.- .+.+++.+.=|-| |++. ....+....+..++--+||+++.. ..|.
T Consensus 10 qPSG~~HLGnylG~ik~wv~-lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~-------~if~ 81 (398)
T PRK12283 10 RPTGRLHLGHYHGVLKNWVK-LQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQA-------TLFI 81 (398)
T ss_pred CCCCcchHHHHHHHHHHHHH-HhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccce-------EEEE
Confidence 47899999999999988884 4567775555555 2322 233455556778888999998864 3789
Q ss_pred ccccHHHHHHHHHHHHHcCCcccccCCHHHHHH
Q 008289 136 QSERNSLYKQYADKLLESGHVYRCFCSNEELEK 168 (571)
Q Consensus 136 QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~ 168 (571)
||+-.+. .+. .-.|.|.++-.+++.
T Consensus 82 QS~v~eh-~eL-------~wil~~~t~~~~L~R 106 (398)
T PRK12283 82 QSKVPEH-AEL-------HLLLSMITPLGWLER 106 (398)
T ss_pred CCCchHH-HHH-------HHHHHhhccHHHHHh
Confidence 9987432 111 123678877766554
No 83
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.87 E-value=0.00013 Score=87.68 Aligned_cols=168 Identities=19% Similarity=0.216 Sum_probs=109.2
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------------------------------
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE--------------------------------- 100 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~--------------------------------- 100 (571)
+.+==+|.|||.||+||+++..+-..++|. ..|.-+++.=..|..
T Consensus 44 ~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~ 123 (975)
T PRK06039 44 VFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCR 123 (975)
T ss_pred EEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHH
Confidence 444456899999999999999999999986 457777776655431
Q ss_pred cCcHHHHHHHHHHHHHcC--CCCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhC
Q 008289 101 RSTKESEEAVLQDLSWLG--LDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLK 176 (571)
Q Consensus 101 R~~~~~~~~i~~~L~wlG--l~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~ 176 (571)
..+.++.+.+.+.++.|| ++||. +|...+ ..+.-+....+|.++|.+|+-.
T Consensus 124 ~~~~~~~~~~~~~~~rlG~~~Dw~~---------~y~T~d~~y~~~v~~~F~~l~~kGliyr~~---------------- 178 (975)
T PRK06039 124 ESVLRYTDEWEEYTERLGRWVDFDN---------PYKTLDNEYMESVWWALKQLYDKGLLYKGY---------------- 178 (975)
T ss_pred HHHHHHHHHHHHHHHHhCceeecCC---------CcCcCCHHHHHHHHHHHHHHHHCCCEEecc----------------
Confidence 124567788999999999 67886 466554 3344455667999999999643
Q ss_pred CCCCCCCCcCCC-CCHHHHH--HHHhcCCCceEEEecCC-CC--ceEEE---eeccceeeccCCCCCCeEEEecCCcccc
Q 008289 177 QLPPVYTGKWAT-ATDAEVQ--KELERGTPYTYRFRVPK-GG--SLKIS---DLIRGEVSWNLDTLGDFVIMRSNGQPVY 247 (571)
Q Consensus 177 ~~~~~Y~g~cr~-l~~~e~~--~~~~~g~~~~iR~k~~~-~~--~~~~~---D~v~G~i~~~~~~~~D~Vl~RsdG~PtY 247 (571)
.+-.|+-.|.. ++..|+. -+...+....++|++.. .+ -+.|+ ..+.|.+....+--.|.|+.+.+| ..|
T Consensus 179 -~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~-~~y 256 (975)
T PRK06039 179 -RVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGG-EVY 256 (975)
T ss_pred -eeeeecCCCCCCccHHHHhhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCC-eEE
Confidence 24457777764 7888886 23344566778888742 11 11221 134444333222225677777666 455
Q ss_pred chh
Q 008289 248 NFC 250 (571)
Q Consensus 248 ~fA 250 (571)
-+|
T Consensus 257 i~a 259 (975)
T PRK06039 257 ILA 259 (975)
T ss_pred EEh
Confidence 333
No 84
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.84 E-value=0.0011 Score=72.35 Aligned_cols=220 Identities=20% Similarity=0.223 Sum_probs=125.9
Q ss_pred CCCCCcCchhhHHHHHHHHHHHHH-cCCeEEEEecC-------CCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccc
Q 008289 62 PSPTGNLHVGGARTALFNYLFARS-KGGKFVLRIED-------TDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133 (571)
Q Consensus 62 PSPtG~LHiG~~rtAl~n~l~Ar~-~~G~fiLRieD-------TD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gp 133 (571)
--|||.+||||.-.|+-||+...+ .+.+.+.=|-| -|+++- ......+..++--+||+++.. .-
T Consensus 9 iqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~l-r~~~~e~aa~~LA~GlDPek~-------~i 80 (431)
T PRK12284 9 ITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARI-QRSTLEIAATWLAAGLDPERV-------TF 80 (431)
T ss_pred ecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHH-HHHHHHHHHHHHHhCCCccce-------EE
Confidence 358999999999999999998864 34454443444 233332 233444667777899999864 26
Q ss_pred eeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCC
Q 008289 134 YRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKG 213 (571)
Q Consensus 134 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~ 213 (571)
|+||+-.+. .++.-. .-|.++.-+|+.+.. |- +........|.. +
T Consensus 81 f~QSdvpeh-~EL~wi-------L~~it~~g~L~Rm~q----------~K--------~k~~~~~~~g~~-------~-- 125 (431)
T PRK12284 81 YRQSDIPEI-PELTWL-------LTCVAGKGLLNRAHA----------YK--------AAVDKNVAAGED-------P-- 125 (431)
T ss_pred EECCcchhH-HHHHHH-------HHhhhhHHHHHhhhH----------HH--------HHHHhhhccccC-------c--
Confidence 899986553 344333 358888888876532 10 000000000100 0
Q ss_pred CceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhC-------CC
Q 008289 214 GSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG-------FS 286 (571)
Q Consensus 214 ~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg-------~~ 286 (571)
.+-+ +-|..+|-.=-+.|-.+.+.+||-=|+|-..+--.=.-|.+.|| +.
T Consensus 126 --------------------~~~i---~~Gll~YPvLqAADILly~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~ 182 (431)
T PRK12284 126 --------------------DAGV---TAGLFMYPVLMAADILMFNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFV 182 (431)
T ss_pred --------------------ccCc---chHHhhchHHHHhhhhhcCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccC
Confidence 0000 12556666666667778889999999986522111122333444 22
Q ss_pred CCc--E-EEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCC-----CCCCCcccCCHHHHHHhc
Q 008289 287 MPY--F-AHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGW-----GDGTENEFFTLKQLVEKF 353 (571)
Q Consensus 287 ~P~--f-~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~-----~~~~~~e~~s~~eli~~F 353 (571)
.|. + .|.+.|++-+|+||||+.++ +.|.+ .|+.|..-+...=. ..+.+.+...+=++...|
T Consensus 183 ~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L~D------s~~~I~kKI~~A~TDs~~~~~~~~pe~snLl~i~~~~ 252 (431)
T PRK12284 183 LPEAVIEESVATLPGLDGRKMSKSYDNTIPLFA------PREELKKAIFSIVTDSRAPGEPKDTEGSALFQLYQAF 252 (431)
T ss_pred CCccccccccccccCCCCccccCCCCCEeeecC------CHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHHHHHh
Confidence 343 2 35788889899999999875 44433 67777776654321 112233444555555555
No 85
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=97.84 E-value=5.7e-05 Score=88.91 Aligned_cols=114 Identities=25% Similarity=0.256 Sum_probs=83.5
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc----------------cCcHHHHHHHHHHHHHc
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE----------------RSTKESEEAVLQDLSWL 117 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~----------------R~~~~~~~~i~~~L~wl 117 (571)
+.+==.|.|||.|||||+++.+....+||. ..|.-++.+-.+|.- ....++.+.|.+.|+.|
T Consensus 35 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~l 114 (805)
T PRK00390 35 YVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSL 114 (805)
T ss_pred EEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 444446899999999999999999999986 458777777666651 12467889999999999
Q ss_pred CCC--CCCCCCCCCCccceecc--ccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCC-CCHH
Q 008289 118 GLD--WDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWAT-ATDA 192 (571)
Q Consensus 118 Gl~--~Degp~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~-l~~~ 192 (571)
|+. ||. +|+.+ ++.+.-+....+|.++|.+|+-. .+--|+-.|.. |+++
T Consensus 115 Gi~~Dw~~---------~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~-----------------~~v~wcp~~~t~La~~ 168 (805)
T PRK00390 115 GFSYDWSR---------EIATCDPEYYKWTQWIFLKLYEKGLAYRKE-----------------SPVNWCPVDGTVLANE 168 (805)
T ss_pred CCcccCCC---------CeecCCHHHHHHHHHHHHHHHHCCCEEEec-----------------CEEEecCCcCCCCCHH
Confidence 995 554 34444 46667778889999999999621 13346666653 6777
Q ss_pred HHH
Q 008289 193 EVQ 195 (571)
Q Consensus 193 e~~ 195 (571)
|+.
T Consensus 169 ev~ 171 (805)
T PRK00390 169 QVI 171 (805)
T ss_pred Hhh
Confidence 664
No 86
>PLN02943 aminoacyl-tRNA ligase
Probab=97.77 E-value=0.00012 Score=87.62 Aligned_cols=130 Identities=25% Similarity=0.335 Sum_probs=94.5
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc------------------c-----C--------
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE------------------R-----S-------- 102 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~------------------R-----~-------- 102 (571)
+.+=-+|.|||.|||||+++..+-..+||. ..|.-++.+-.+|.. + .
T Consensus 91 ~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~ 170 (958)
T PLN02943 91 VIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWE 170 (958)
T ss_pred EEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence 444447999999999999999999999986 568888877777753 0 0
Q ss_pred -cHHHHHHHHHHHHHcCC--CCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCC
Q 008289 103 -TKESEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQ 177 (571)
Q Consensus 103 -~~~~~~~i~~~L~wlGl--~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~ 177 (571)
..++.+.|.+.++.||+ +|+. +|+..+ ....-+....+|.++|.+|+..
T Consensus 171 ~~~~~~~~~~~~~~~lG~s~Dw~~---------~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~----------------- 224 (958)
T PLN02943 171 WKEKYGGTITNQIKRLGASCDWSR---------ERFTLDEQLSRAVVEAFVRLHEKGLIYQGS----------------- 224 (958)
T ss_pred HHHHHHHHHHHHHHHhCcceecCC---------CcccCCHHHHHHHHHHHHHHHHCCCEEecC-----------------
Confidence 14567899999999998 5764 455553 4555667778899999999632
Q ss_pred CCCCCCCcCCC-CCHHHHHHHHhcCCCceEEEecC
Q 008289 178 LPPVYTGKWAT-ATDAEVQKELERGTPYTYRFRVP 211 (571)
Q Consensus 178 ~~~~Y~g~cr~-l~~~e~~~~~~~g~~~~iR~k~~ 211 (571)
.+--|+-.|.. ++..|++-....|.-+.+||++.
T Consensus 225 ~~V~wcp~~~Tals~~Evey~e~~~~~~~i~f~l~ 259 (958)
T PLN02943 225 YMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVA 259 (958)
T ss_pred ceeccCCCCCCCcCHHHhhcccccccEEEEEEEEc
Confidence 23346667764 78888765445566667888763
No 87
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.77 E-value=6.4e-05 Score=89.58 Aligned_cols=94 Identities=21% Similarity=0.374 Sum_probs=70.2
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------------------cc-------CcH
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL----------------------ER-------STK 104 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~----------------------~R-------~~~ 104 (571)
+.+==+|.+||.||||||++.+.-..++|. ..|.-++.+=.+|. +. ...
T Consensus 52 ~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~ 131 (912)
T PRK05743 52 ILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYAL 131 (912)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHH
Confidence 444456799999999999999999999986 45777765544443 21 234
Q ss_pred HHHHHHHHHHHHcCC--CCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCccc
Q 008289 105 ESEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 105 ~~~~~i~~~L~wlGl--~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (571)
++.+.+.++++.||+ +||. +|...+ +...-+....+|.++|.+|+
T Consensus 132 ~~~~~~~~~~~~lG~~~dw~~---------~~~T~~~~~~~~v~~~f~~l~~~Gliy~ 180 (912)
T PRK05743 132 EQVDIQREDFKRLGVLGDWDN---------PYLTMDFKYEANIIRALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHHHHHHHhCCcccCCC---------CcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 567889999999999 8986 455543 45556677888999999996
No 88
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=97.75 E-value=7.5e-05 Score=90.13 Aligned_cols=129 Identities=23% Similarity=0.285 Sum_probs=90.7
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------c-----------------------
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE---------R----------------------- 101 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~---------R----------------------- 101 (571)
+.+==+|.|||.|||||+++.++-..++|. ..|.-++.+-.+|.. +
T Consensus 51 ~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~ 130 (1052)
T PRK14900 51 SIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVW 130 (1052)
T ss_pred EEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHH
Confidence 444457899999999999999999999996 458888877777752 1
Q ss_pred -CcHHHHHHHHHHHHHcCC--CCCCCCCCCCCccceecc--ccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhC
Q 008289 102 -STKESEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLK 176 (571)
Q Consensus 102 -~~~~~~~~i~~~L~wlGl--~~Degp~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~ 176 (571)
...++.+.|.+.++.||+ +|+. +|+.. ++.+.-+....+|.++|.+|+-.
T Consensus 131 ~~~~~~~~~~~~~~~~lG~s~Dw~~---------~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~---------------- 185 (1052)
T PRK14900 131 AWKEQYGSRIGEQHKALGASLDWQR---------ERFTMDEGLSRAVREVFVRLHEEGLIYREK---------------- 185 (1052)
T ss_pred HHHHHHHHHHHHHHHHhchheecCC---------CcCcCCHHHHHHHHHHHHHHHHCCCEEecc----------------
Confidence 024567889999999995 5664 45443 46667778888999999999632
Q ss_pred CCCCCCCCcCCC-CCHHHHHHHH-hcCCCceEEEec
Q 008289 177 QLPPVYTGKWAT-ATDAEVQKEL-ERGTPYTYRFRV 210 (571)
Q Consensus 177 ~~~~~Y~g~cr~-l~~~e~~~~~-~~g~~~~iR~k~ 210 (571)
.+-.|+-.|.. |+..|+.... ..|.-+.+||.+
T Consensus 186 -~~v~wcp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l 220 (1052)
T PRK14900 186 -KLINWCPDCRTALSDLEVEHEEAHQGELWSFAYPL 220 (1052)
T ss_pred -ceeccCCCCCCCccHHHhcccCCCCCeEEEEEEEe
Confidence 23346666753 6777774321 234444567765
No 89
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=97.71 E-value=0.0001 Score=88.78 Aligned_cols=94 Identities=29% Similarity=0.369 Sum_probs=74.0
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCccc--------------------------------
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLER-------------------------------- 101 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~R-------------------------------- 101 (571)
+.+==+|.|||.|||||+++.++-..+||. ..|.-++.+-.+|..-
T Consensus 63 ~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~ 142 (995)
T PTZ00419 63 VIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVW 142 (995)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHH
Confidence 444446799999999999999999999986 5688888888887630
Q ss_pred -CcHHHHHHHHHHHHHcCC--CCCCCCCCCCCccceecc--ccHHHHHHHHHHHHHcCCccc
Q 008289 102 -STKESEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 102 -~~~~~~~~i~~~L~wlGl--~~Degp~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 158 (571)
-+.++.+.|.+.|+.||+ +|+. +|+.. +.....+....+|.++|.+|+
T Consensus 143 ~w~~~~~~~~~~~~~~lG~~~DW~~---------~~~T~d~~~~~~v~~~F~~l~~~Gliyr 195 (995)
T PTZ00419 143 EWKDKHGNNICNQLRRLGSSLDWSR---------EVFTMDEQRSKAVKEAFVRLYEDGLIYR 195 (995)
T ss_pred HHHHHHHHHHHHHHHHhCceeeCCC---------CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 025778889999999995 5665 34444 356678888999999999997
No 90
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.71 E-value=0.00097 Score=70.88 Aligned_cols=192 Identities=19% Similarity=0.196 Sum_probs=110.4
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc--cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccceec
Q 008289 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE--RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQ 136 (571)
Q Consensus 63 SPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD----TD~~--R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~Q 136 (571)
.|||.+||||.-.++-+|..-... .+.++=|-| |+.. -...+....+..++--+||+++.- ..|.|
T Consensus 9 ~PTG~lHLG~~~g~~~~~~~lQ~~-~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~-------~if~q 80 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKNWVELQDE-YECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKS-------TIFVQ 80 (333)
T ss_pred CCCccchHHhHHHHHHHHHHHHhc-CCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhhe-------EEEEe
Confidence 488999999999888887544432 343343443 2221 123344455667777899998753 36899
Q ss_pred cccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCce
Q 008289 137 SERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSL 216 (571)
Q Consensus 137 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~ 216 (571)
|+-.+.+ +++-. ..|+.+-.+|+.+- .|. .+. + +. +..+
T Consensus 81 S~~~~~~-el~~~-------l~~~~~~~~l~r~~----------~~k------------~~~--~-----~~----~~~~ 119 (333)
T PRK00927 81 SHVPEHA-ELAWI-------LNCITPLGELERMT----------QFK------------DKS--A-----KQ----KENV 119 (333)
T ss_pred CCCchhH-HHHHH-------HHhhhhHHHHHhhh----------hHH------------HHH--h-----cc----CCCC
Confidence 9855433 33332 24555555554321 110 000 0 00 0000
Q ss_pred EEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCC------CCCcE
Q 008289 217 KISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGF------SMPYF 290 (571)
Q Consensus 217 ~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~------~~P~f 290 (571)
+-|..+|-.--+.|-...+.++|.-|.|-..+--.=.-+.+.||. ..|..
T Consensus 120 ------------------------~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~ 175 (333)
T PRK00927 120 ------------------------SAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEP 175 (333)
T ss_pred ------------------------CcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCChh
Confidence 114455555555566667899999999965332222334455552 46665
Q ss_pred EE---eeeeecCCCC--cccccCCC----CchHHHHHCCCCHHHHHHHHHHh
Q 008289 291 AH---VSLILAPDRS--KLSKRHGA----TSVGQFREMGYLPQAMVNYLALL 333 (571)
Q Consensus 291 ~H---~pli~~~~g~--KLSKR~g~----~~v~~~r~~G~~Peai~n~l~~l 333 (571)
.| .|+|.+-+|. ||||+.++ +.+.+ .|+.|.+-+...
T Consensus 176 i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D------~~~~I~~KI~~a 221 (333)
T PRK00927 176 LIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD------DPKTIAKKIKKA 221 (333)
T ss_pred hhccccccccCCCCCCCCCCCCCCCCCCeEEeeC------CHHHHHHHHHhC
Confidence 44 3788888876 99999873 44544 788888888653
No 91
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=97.65 E-value=0.0015 Score=71.29 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=61.3
Q ss_pred cccchhhhHhhhcC----CCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCCcccccCCC-CchHHHHHC
Q 008289 245 PVYNFCVTVDDATM----AISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREM 319 (571)
Q Consensus 245 PtY~fA~vVDD~~m----~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~ 319 (571)
.+|.+--+.|=... +++.++-|.|-..|--.=+-+.+.+|...|.-.+.|+|.+.+|+||||+.++ +.+.+ .
T Consensus 168 f~YpllQa~D~~~l~~~~~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~naI~L~d---~ 244 (410)
T PRK13354 168 FFYPLLQAYDFVHLNRKEDVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAGGAIWLDP---E 244 (410)
T ss_pred hccHHHHhhhHHHHhccCCCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCCCceeccC---C
Confidence 34444444444444 8899999999887766666777888988776678999999999999999874 44443 2
Q ss_pred CCCHHHHHHHHHH
Q 008289 320 GYLPQAMVNYLAL 332 (571)
Q Consensus 320 G~~Peai~n~l~~ 332 (571)
-..|+.+.+|+..
T Consensus 245 ~tsp~~i~qki~~ 257 (410)
T PRK13354 245 KTSPYEFYQFWMN 257 (410)
T ss_pred CCCHHHHHHHHHc
Confidence 3448888888753
No 92
>PLN02843 isoleucyl-tRNA synthetase
Probab=97.61 E-value=0.00015 Score=86.88 Aligned_cols=94 Identities=21% Similarity=0.387 Sum_probs=70.2
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc-----------------------cC-------c
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE-----------------------RS-------T 103 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~-----------------------R~-------~ 103 (571)
+.+==+|.+||.||||||++.++-..++|. ..|.-++.+-.+|.. .. .
T Consensus 35 ~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~ 114 (974)
T PLN02843 35 TLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFA 114 (974)
T ss_pred EEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHH
Confidence 334446799999999999999999999986 457777766665532 00 3
Q ss_pred HHHHHHHHHHHHHcCC--CCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCccc
Q 008289 104 KESEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 104 ~~~~~~i~~~L~wlGl--~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (571)
.++++.+.+.++.||+ +||. +|+..+ ....-.....+|.++|.+|+
T Consensus 115 ~~~~~~~~~~~~~lG~~~Dw~~---------~y~T~d~~~~~~v~~~f~~l~~~GlIyr 164 (974)
T PLN02843 115 KKTVDTQRESFKRYGVWGDWEN---------PYLTLDPEYEAAQIEVFGQMFLNGYIYR 164 (974)
T ss_pred HHHHHHHHHHHHHhCCceecCC---------CCccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 4567778999999999 8986 455543 44555677788999999996
No 93
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.59 E-value=0.0052 Score=66.55 Aligned_cols=84 Identities=8% Similarity=0.006 Sum_probs=56.1
Q ss_pred CccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCC-CCCcEEEeeeeecC-CC-CcccccCCC--CchHHHH
Q 008289 243 GQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGF-SMPYFAHVSLILAP-DR-SKLSKRHGA--TSVGQFR 317 (571)
Q Consensus 243 G~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~-~~P~f~H~pli~~~-~g-~KLSKR~g~--~~v~~~r 317 (571)
|..+|-.--+.|-...+.++|.-|.|-...--.-.-+.+.+|. ..|...|.|+|.+- +| +||||+.++ +.+.+
T Consensus 194 g~l~YP~LQaaDil~l~adivpvG~DQ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D-- 271 (383)
T PTZ00126 194 AQILYPCMQCADIFYLKADICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED-- 271 (383)
T ss_pred hhhhhhHHHhhhhhccCCCEEEeCccHHHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCeecCCC--
Confidence 3455555555566667888999898853110111234467885 46777789999998 45 699999865 44544
Q ss_pred HCCCCHHHHHHHHHH
Q 008289 318 EMGYLPQAMVNYLAL 332 (571)
Q Consensus 318 ~~G~~Peai~n~l~~ 332 (571)
.|+.|..-+..
T Consensus 272 ----spe~I~kKI~k 282 (383)
T PTZ00126 272 ----SEEDVNRKIKK 282 (383)
T ss_pred ----CHHHHHHHHHh
Confidence 78888888865
No 94
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=97.58 E-value=0.00015 Score=85.71 Aligned_cols=94 Identities=24% Similarity=0.309 Sum_probs=70.7
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc----------------cCcHHHHHHHHHHHHHc
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE----------------RSTKESEEAVLQDLSWL 117 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~----------------R~~~~~~~~i~~~L~wl 117 (571)
+.+=-.|.|||.|||||+++.++...+||. ..|.-++.+-.+|.- ....++.+.+.+.|+.|
T Consensus 32 ~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 111 (842)
T TIGR00396 32 YILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL 111 (842)
T ss_pred EEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 555558999999999999999999999996 458888877777652 12467889999999999
Q ss_pred CCC--CCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCccc
Q 008289 118 GLD--WDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 118 Gl~--~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (571)
|+. ||. +|+.++ ..+.-+....+|.++|.+|+
T Consensus 112 G~~~Dw~~---------~~~T~d~~y~~~~~~~F~~L~~kGliy~ 147 (842)
T TIGR00396 112 GFSYDWDR---------EIATCDPEYYKWTQWIFLELFEKGLAYV 147 (842)
T ss_pred CCcccCCC---------CcccCCHHHHHHHHHHHHHHHHCCCeEe
Confidence 975 554 344443 33333444579999999997
No 95
>PLN02563 aminoacyl-tRNA ligase
Probab=97.56 E-value=0.00023 Score=84.96 Aligned_cols=94 Identities=27% Similarity=0.327 Sum_probs=72.6
Q ss_pred eEEEeCCCCCCc-CchhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------------ccCcHHHHHHHHHHHHH
Q 008289 56 VRVRFAPSPTGN-LHVGGARTALFNYLFARS--KGGKFVLRIEDTDL----------------ERSTKESEEAVLQDLSW 116 (571)
Q Consensus 56 vr~RFAPSPtG~-LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~----------------~R~~~~~~~~i~~~L~w 116 (571)
+.+=-.|.|||. |||||+++.+....+||. ..|.-+|.+-.+|. .-.+.++++.+.+.|+.
T Consensus 113 ~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~ 192 (963)
T PLN02563 113 YVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKS 192 (963)
T ss_pred EEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHH
Confidence 444445999997 999999999999999996 45877887777764 12356888999999999
Q ss_pred cCC--CCCCCCCCCCCccceecc--ccHHHHHHHHHHHHHcCCccc
Q 008289 117 LGL--DWDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 117 lGl--~~Degp~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 158 (571)
||+ +||. +|+.+ ++...-+....+|.++|.+|+
T Consensus 193 lG~s~DW~r---------~~~T~dp~y~~~~q~~F~~L~~~GliY~ 229 (963)
T PLN02563 193 LGFSYDWDR---------EISTTEPEYYKWTQWIFLQLLKRGLAYQ 229 (963)
T ss_pred hCcEeeCCC---------CeecCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 995 5665 35554 355555678889999999996
No 96
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=97.55 E-value=0.00019 Score=87.34 Aligned_cols=127 Identities=17% Similarity=0.174 Sum_probs=90.5
Q ss_pred EEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------c------------------------C
Q 008289 58 VRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE---------R------------------------S 102 (571)
Q Consensus 58 ~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~---------R------------------------~ 102 (571)
+==+|.+||.||||||++-.+-..++|. ..|.-++++-.+|.. + .
T Consensus 107 ~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~ 186 (1205)
T PTZ00427 107 YDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGI 186 (1205)
T ss_pred ecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHH
Confidence 3346899999999999999999999996 468889988888741 0 0
Q ss_pred cHHHHHHHHHHHHHcC--CCCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCC
Q 008289 103 TKESEEAVLQDLSWLG--LDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQL 178 (571)
Q Consensus 103 ~~~~~~~i~~~L~wlG--l~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~ 178 (571)
+.++.+.+.+.++.|| ++||. +|+..+ +.+.-.....+|.++|.+|+-+ .
T Consensus 187 ~~~~~~~~~~~~~rlG~~iDw~~---------~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~-----------------k 240 (1205)
T PTZ00427 187 VLKYSNEWVKTVERIGRWIDFKN---------DYKTMDKTFMESVWWVFSELYKNNYVYKSF-----------------K 240 (1205)
T ss_pred HHHHHHHHHHHHHHhCcEEecCC---------CcCcCCHHHHHHHHHHHHHHHHCCCEEecc-----------------e
Confidence 2456788899999999 88996 566554 5666677888999999999632 2
Q ss_pred CCCCCCcCCC-CCHHHHH--HHHhcCCCceEEEec
Q 008289 179 PPVYTGKWAT-ATDAEVQ--KELERGTPYTYRFRV 210 (571)
Q Consensus 179 ~~~Y~g~cr~-l~~~e~~--~~~~~g~~~~iR~k~ 210 (571)
+-.|+-.|.. ++..|+. -+-..+....++|++
T Consensus 241 ~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l 275 (1205)
T PTZ00427 241 VMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVL 275 (1205)
T ss_pred eeccCCCCCCchhHHHhhcccccccCceEEEEeec
Confidence 4457777753 6777763 111222234566655
No 97
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.55 E-value=0.0023 Score=69.84 Aligned_cols=85 Identities=14% Similarity=0.120 Sum_probs=58.2
Q ss_pred cccchhhhHhhhcC----CCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCCcccccCCC-CchHHHHHC
Q 008289 245 PVYNFCVTVDDATM----AISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREM 319 (571)
Q Consensus 245 PtY~fA~vVDD~~m----~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~ 319 (571)
.+|..--+.|=... +.++++=|.|-..|--.=.-+.+.+|...+.-.+.|+|.+.+|+||||+.++ +.+.+ .
T Consensus 170 f~Yp~LQa~D~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~~~~G~KMsKS~~naI~L~d---~ 246 (408)
T PRK05912 170 FLYPLLQGYDFVALNKRYGCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLTGLDGKKMGKSEGNAVWLDE---E 246 (408)
T ss_pred hhhHHHHHhhHHHHhccCCCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcCCCCCCcccCCCCCceeCCC---C
Confidence 44444444444445 7888888988776554445566778866544468999999999999999864 45542 3
Q ss_pred CCCHHHHHHHHHH
Q 008289 320 GYLPQAMVNYLAL 332 (571)
Q Consensus 320 G~~Peai~n~l~~ 332 (571)
-..|+.+..++..
T Consensus 247 ~tsp~~i~qki~~ 259 (408)
T PRK05912 247 KTSPYEMYQKWMN 259 (408)
T ss_pred CCCHHHHHHHHhc
Confidence 4568888888864
No 98
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=97.44 E-value=0.00042 Score=83.07 Aligned_cols=129 Identities=22% Similarity=0.289 Sum_probs=85.7
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCc------------------cc--------------
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSK--GGKFVLRIEDTDL------------------ER-------------- 101 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~--~G~fiLRieDTD~------------------~R-------------- 101 (571)
+.+==+|.|||.||||||++.++-..++|.+ .|.-++.+=..|- .+
T Consensus 57 ~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~ 136 (961)
T PRK13804 57 VLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECRE 136 (961)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHH
Confidence 4455578999999999999999999999863 4666655444432 00
Q ss_pred CcHHHHHHHHHHHHHcCCC--CCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCC
Q 008289 102 STKESEEAVLQDLSWLGLD--WDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQ 177 (571)
Q Consensus 102 ~~~~~~~~i~~~L~wlGl~--~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~ 177 (571)
...++++.+.+.++.||+. ||. +|...+ ....-+....+|.++|.+|+-.
T Consensus 137 ~a~~~i~~~~~~~~rlG~~~Dw~~---------~y~T~d~~y~~~~~~~F~~l~~kGliyr~~----------------- 190 (961)
T PRK13804 137 YALSWIDVQREEFKRLGVLGDWDN---------PYTTMDFHAEARIAREFGKFAAKGQLYRGS----------------- 190 (961)
T ss_pred HHHHHHHHHHHHHHHhCceecCCC---------CcCcCCHHHHHHHHHHHHHHHHCCCEEeCC-----------------
Confidence 1345677889999999985 775 565553 4444556778899999999621
Q ss_pred CCCCCCCcCCC-CCHHHHHHHHhcCCCceEEEec
Q 008289 178 LPPVYTGKWAT-ATDAEVQKELERGTPYTYRFRV 210 (571)
Q Consensus 178 ~~~~Y~g~cr~-l~~~e~~~~~~~g~~~~iR~k~ 210 (571)
.|-.|+-.|+. ++++|++-.-..+....++|++
T Consensus 191 kpV~Wcp~~~TaLa~~Evey~~~~s~~~~v~F~~ 224 (961)
T PRK13804 191 KPVMWSVVERTALAEAEIEYHDIESDTIWVKFPV 224 (961)
T ss_pred cceecCCCCCCCccchhcccccccCceEEEEEEe
Confidence 23345556654 5666664332334445567765
No 99
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=97.34 E-value=0.00032 Score=72.86 Aligned_cols=193 Identities=21% Similarity=0.259 Sum_probs=119.0
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCC-----Ccc----cCcHHHHHHHHHH--HHHcCCCCCCCCCCCCCc
Q 008289 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDT-----DLE----RSTKESEEAVLQD--LSWLGLDWDEGPGVGGDY 131 (571)
Q Consensus 63 SPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDT-----D~~----R~~~~~~~~i~~~--L~wlGl~~Degp~~~g~~ 131 (571)
-|||.|||||+-.. .++..-...|.+.++=|-|- |+. |......+.+.++ +--+|++++.-
T Consensus 13 ~PTg~lHlG~l~~~-~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~------- 84 (292)
T PF00579_consen 13 DPTGDLHLGHLVPI-MKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKT------- 84 (292)
T ss_dssp ESSSS-BHHHHHHH-HHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTE-------
T ss_pred CCCCcccchHHHHH-HHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccce-------
Confidence 47888999977644 55666666888877766552 333 4455566666666 77889988753
Q ss_pred cceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecC
Q 008289 132 GPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVP 211 (571)
Q Consensus 132 gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~ 211 (571)
..|.||+-.... ++...|. |.++--++..+.... ++..++..|.
T Consensus 85 ~i~~~s~~~~~~-~~~~~l~-------~~~~~~~l~~~~~~~-------------------~~~~~~~~~~--------- 128 (292)
T PF00579_consen 85 EIFRQSDWPEHM-ELWWFLS-------DVARLFSLNRMLRFK-------------------DVKKRLKNGE--------- 128 (292)
T ss_dssp EEEEGHHHHCHH-HHHHHHH-------HHHBHHHHHHHHHHH-------------------HHHHHHSSTT---------
T ss_pred EEEeCCCccccc-chhhhhc-------ccccccchhhhhhhc-------------------cccccccccc---------
Confidence 378999865554 5555554 334444555443211 1122222210
Q ss_pred CCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCC----C
Q 008289 212 KGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFS----M 287 (571)
Q Consensus 212 ~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~----~ 287 (571)
.+ +=|..+|-.--+.|=...+.++|+-|.|-..+--.=..+.+.+|.. .
T Consensus 129 ---~~------------------------~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~ 181 (292)
T PF00579_consen 129 ---GI------------------------SLGEFSYPLLQAADILLLKADLVPGGIDQRGHIELARDLARKFNYKEIFPK 181 (292)
T ss_dssp ---TS------------------------BHHHHHHHHHHHHHHHHTTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS
T ss_pred ---Cc------------------------ceeeEEcccccccceeeeccccccccchHHHHHHHHHHHHhhhcccccccC
Confidence 00 0012445555556777777789999999776554445666778877 8
Q ss_pred CcEEEeeeeecCCCC-cccccCCCCc--hHHHHHCCCCHHHHHHHHHH
Q 008289 288 PYFAHVSLILAPDRS-KLSKRHGATS--VGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 288 P~f~H~pli~~~~g~-KLSKR~g~~~--v~~~r~~G~~Peai~n~l~~ 332 (571)
|...|.|++.+.+|. ||||++++.+ +.+ .|+.+.+.+..
T Consensus 182 p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d------~~~~i~~Ki~~ 223 (292)
T PF00579_consen 182 PAGLTSPLLPGLDGQKKMSKSDPNSAIFLDD------SPEEIRKKIKK 223 (292)
T ss_dssp -EEEEETCBBSTTSSSBTTTTTTGGS-BTTT------THHHHHHHHHH
T ss_pred chheeeccccccCCccccCccCCccEEEEec------cchhHHHHHHH
Confidence 999999999999999 9999998733 333 45566555543
No 100
>PLN02381 valyl-tRNA synthetase
Probab=97.32 E-value=0.00082 Score=81.35 Aligned_cols=95 Identities=28% Similarity=0.381 Sum_probs=72.2
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------c------C----------------
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE---------R------S---------------- 102 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~---------R------~---------------- 102 (571)
+.+==+|.+||.|||||+++..+-..++|. ..|.-++.+-.+|.. + .
T Consensus 131 ~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~ 210 (1066)
T PLN02381 131 VIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVW 210 (1066)
T ss_pred EEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHH
Confidence 444456799999999999999999999986 458788877777652 0 0
Q ss_pred --cHHHHHHHHHHHHHcCC--CCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccc
Q 008289 103 --TKESEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRC 159 (571)
Q Consensus 103 --~~~~~~~i~~~L~wlGl--~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C 159 (571)
+.++.+.|.+.++.||+ +|+. +|+..+ +...-+....+|.++|.+|+-
T Consensus 211 ~~~~~~~~~~~~q~~~lG~s~Dw~~---------~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 264 (1066)
T PLN02381 211 KWKDEYGGTILNQLRRLGASLDWSR---------ECFTMDEQRSKAVTEAFVRLYKEGLIYRD 264 (1066)
T ss_pred HHHHHHHHHHHHHHHHhCchhccCC---------ccccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 24667888999999995 5664 466553 556667788899999999974
No 101
>PLN02882 aminoacyl-tRNA ligase
Probab=97.29 E-value=0.0008 Score=82.02 Aligned_cols=92 Identities=21% Similarity=0.234 Sum_probs=72.2
Q ss_pred EEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc----------------c-----------------C
Q 008289 58 VRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE----------------R-----------------S 102 (571)
Q Consensus 58 ~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~----------------R-----------------~ 102 (571)
.==+|.+||.+|+||+++.++-..++|. ..|.-++++-.+|.. + .
T Consensus 43 ~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~ 122 (1159)
T PLN02882 43 YDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSI 122 (1159)
T ss_pred eCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHH
Confidence 3346899999999999999999999996 458888877766641 0 1
Q ss_pred cHHHHHHHHHHHHHcC--CCCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCccc
Q 008289 103 TKESEEAVLQDLSWLG--LDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 103 ~~~~~~~i~~~L~wlG--l~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (571)
+..|.+.+.+.++.|| ++||. +|+..+ +.+.-.....+|.++|.+|+
T Consensus 123 ~~~~~~~~~~~~~rlG~~~D~~~---------~y~T~d~~~~~~v~~~f~~l~~kGliyr 173 (1159)
T PLN02882 123 VTRYSKEWEKTVTRTGRWIDFEN---------DYKTMDPKFMESVWWVFKQLFEKGLVYK 173 (1159)
T ss_pred HHHHHHHHHHHHHHcCcEEECCC---------CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 3467788899999999 88996 566654 55566677889999999996
No 102
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0014 Score=76.52 Aligned_cols=126 Identities=25% Similarity=0.331 Sum_probs=95.2
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc-----------------------cC---------cHHH
Q 008289 61 APSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE-----------------------RS---------TKES 106 (571)
Q Consensus 61 APSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~-----------------------R~---------~~~~ 106 (571)
+|.+||.||||||.+..+-..++|. ..|.=+|=+-.||.. |+ ++++
T Consensus 41 PPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~ 120 (877)
T COG0525 41 PPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEES 120 (877)
T ss_pred CCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHH
Confidence 6799999999999999988888886 458777777777763 11 4688
Q ss_pred HHHHHHHHHHcCCC--CCCCCCCCCCccceecc--ccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCC
Q 008289 107 EEAVLQDLSWLGLD--WDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVY 182 (571)
Q Consensus 107 ~~~i~~~L~wlGl~--~Degp~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y 182 (571)
...|.+-++.||+. |+.. |+.. +....-++...+|.++|.+|+-. .+--.
T Consensus 121 ~~~I~~Q~~rLG~S~DWsrE---------~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~-----------------~lVNW 174 (877)
T COG0525 121 GGTIREQLRRLGVSVDWSRE---------RFTMDPGLSRAVQEAFVRLYEKGLIYRGE-----------------RLVNW 174 (877)
T ss_pred HHHHHHHHHHhCCCcccccc---------cccCCHHHHHHHHHHHHHHHHCCceeecC-----------------CcccC
Confidence 89999999999976 5542 3333 36677889999999999999621 12235
Q ss_pred CCcCC-CCCHHHHHHHHhcCCCceEEEecCC
Q 008289 183 TGKWA-TATDAEVQKELERGTPYTYRFRVPK 212 (571)
Q Consensus 183 ~g~cr-~l~~~e~~~~~~~g~~~~iR~k~~~ 212 (571)
+-+|+ .+|..|++.+..+|.-+.||+.+-+
T Consensus 175 cP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~ 205 (877)
T COG0525 175 CPKCRTAISDIEVEYKEVEGKLYYIKYPLAD 205 (877)
T ss_pred CCccccchhhhhhccceeeeeEEEEEEecCC
Confidence 56677 4788888877778888888887753
No 103
>PLN02486 aminoacyl-tRNA ligase
Probab=97.20 E-value=0.029 Score=60.76 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=47.4
Q ss_pred cEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCC--CcccccCCC--CchHHHHHCCCCHHHHHHHHHHhCCC
Q 008289 261 SHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDR--SKLSKRHGA--TSVGQFREMGYLPQAMVNYLALLGWG 336 (571)
Q Consensus 261 tHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g--~KLSKR~g~--~~v~~~r~~G~~Peai~n~l~~lG~~ 336 (571)
++|=.|.|-...--.-.-+.+.+|...|.+.|.+++...+| +||||+.++ +.+.+ .|+.|.+.+...-.+
T Consensus 221 ~lVPvG~DQd~~~~ltRdia~r~~~~kp~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k~A~t 294 (383)
T PLN02486 221 CLIPCAIDQDPYFRMTRDVAPRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTD------TPKEIKNKINKYAFS 294 (383)
T ss_pred ceeecccchHHHHHHHHHHHHHhCCCCcceeccccccCCCCCCCcCcCcCCCCeeeccC------CHHHHHHHHhcCCCC
Confidence 45556777321111224455788988898888666665555 699999975 45544 899999998775555
Q ss_pred CC
Q 008289 337 DG 338 (571)
Q Consensus 337 ~~ 338 (571)
++
T Consensus 295 ~~ 296 (383)
T PLN02486 295 GG 296 (383)
T ss_pred CC
Confidence 43
No 104
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=97.06 E-value=0.0011 Score=79.51 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=44.7
Q ss_pred CC-cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHH
Q 008289 287 MP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQL 349 (571)
Q Consensus 287 ~P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~el 349 (571)
.| .+.|+++++. +|+||||+.|+ +++.++.+. |-+++++-||+..|- ..++-.|+.+.+
T Consensus 604 ~Pk~i~~~G~vl~-~G~KMSKSlGNvI~p~d~i~~-yGaDalRl~Ll~~~~--~~~D~~fs~~~~ 664 (938)
T TIGR00395 604 WPRGIVVNGYVML-EGKKMSKSKGNVLTLEQAVEK-FGADVARLYIADAAE--TVQDADWKESEV 664 (938)
T ss_pred cCcEEEEeceEEe-CCccccCcCCCCCCHHHHHHH-cChHHHHHHHHhcCC--CCCCCCcCHHHH
Confidence 35 5678888876 89999999998 788887776 899999999987652 123345666555
No 105
>PLN02886 aminoacyl-tRNA ligase
Probab=97.00 E-value=0.014 Score=63.17 Aligned_cols=90 Identities=19% Similarity=0.171 Sum_probs=57.8
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc--cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccceec
Q 008289 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE--RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQ 136 (571)
Q Consensus 63 SPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD----TD~~--R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~Q 136 (571)
-|||.+||||.--++-||..-.. +.+.+.=|-| |... ....+....+..++--+||+++.. ..|.|
T Consensus 54 qPSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~~lr~~~~~~~a~~lA~GlDP~ks-------~if~Q 125 (389)
T PLN02886 54 QPTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACGIDPSKA-------SVFVQ 125 (389)
T ss_pred CCCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHHHHHHHHHHHHHHHHHcCcCccce-------EEEEe
Confidence 57799999998889999977654 5554444555 2211 123344455667888899998854 26899
Q ss_pred cccHHHHHHHHHHHHHcCCcccccCCHHHHHH
Q 008289 137 SERNSLYKQYADKLLESGHVYRCFCSNEELEK 168 (571)
Q Consensus 137 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~ 168 (571)
|+-.+. .+.+-. +.|.++-.+|+.
T Consensus 126 S~v~e~-~eL~wi-------l~~~t~~g~L~R 149 (389)
T PLN02886 126 SHVPAH-AELMWL-------LSCSTPIGWLNK 149 (389)
T ss_pred CCCchh-HHHHHH-------HHhhCcHHHHHh
Confidence 985443 333322 567777777754
No 106
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0011 Score=77.54 Aligned_cols=95 Identities=27% Similarity=0.347 Sum_probs=68.6
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEE---ec-------------CCCcccCcHHHHHHHHHHHHH
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLR---IE-------------DTDLERSTKESEEAVLQDLSW 116 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLR---ie-------------DTD~~R~~~~~~~~i~~~L~w 116 (571)
-..+=-=|.|+|.||+||+|+......+||. .+|.=+|- ++ .+||.--+..+++.+.+.|+-
T Consensus 36 fyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~ 115 (814)
T COG0495 36 FYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKS 115 (814)
T ss_pred eEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 3555566999999999999999999999996 34555541 11 347777789999999999999
Q ss_pred cCCC--CCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCccc
Q 008289 117 LGLD--WDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 117 lGl~--~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (571)
||+. |+.. +..++ .-.--+-...+|.++|+||.
T Consensus 116 lG~siDW~Re---------f~T~Dp~Yyk~~QW~F~kL~ekGL~y~ 152 (814)
T COG0495 116 LGFSIDWRRE---------FATCDPEYYKWIQWQFLKLYEKGLAYR 152 (814)
T ss_pred hCCccccccc---------eecCCccHHHHHHHHHHHHHHCCCEEe
Confidence 9975 6653 22222 22222334568999999997
No 107
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=96.78 E-value=0.0034 Score=71.86 Aligned_cols=127 Identities=25% Similarity=0.312 Sum_probs=79.5
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------------------------------cCcH
Q 008289 60 FAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE---------------------------------RSTK 104 (571)
Q Consensus 60 FAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~---------------------------------R~~~ 104 (571)
=+|.+||.||+||+++..+-..+||. ..|.-++.+=..|.. ....
T Consensus 30 ~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (601)
T PF00133_consen 30 PPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECREWAE 109 (601)
T ss_dssp ---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHHHHHH
T ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhcchhh
Confidence 46799999999999999999999986 457766654333321 1135
Q ss_pred HHHHHHHHHHHHcCC--CCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCC
Q 008289 105 ESEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPP 180 (571)
Q Consensus 105 ~~~~~i~~~L~wlGl--~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~ 180 (571)
++.+.+.++++.||+ +|+. +|...+ ..+.-.....+|.++|.+|+-. .+-
T Consensus 110 ~~~~~~~~~~~~lG~~~Dw~~---------~y~T~d~~y~~~v~~~F~~l~~kglIyr~~-----------------~pv 163 (601)
T PF00133_consen 110 EFIEEQKEQFKRLGVSIDWDR---------EYFTMDPEYEKFVWWQFKKLYEKGLIYRGK-----------------KPV 163 (601)
T ss_dssp HHHHHHHHHHHHTT--SECTC---------EEETTSHHHHHHHHHHHHHHHHTTSEEEEE-----------------EEE
T ss_pred hhhhhhhhhhhheeeecccCC---------ceEECCccHhHHHHHHHHHHHhcCcEEeeC-----------------CCC
Confidence 677889999999996 6775 566553 4445556778999999999722 133
Q ss_pred CCCCcCCC-CCHHHHHHHHhcCCCceEEEecCC
Q 008289 181 VYTGKWAT-ATDAEVQKELERGTPYTYRFRVPK 212 (571)
Q Consensus 181 ~Y~g~cr~-l~~~e~~~~~~~g~~~~iR~k~~~ 212 (571)
.|+-.|.. ++..|+..+...+..+.++|++.+
T Consensus 164 ~w~p~~~t~lsd~Ev~~~~~~~~~~~v~f~~~~ 196 (601)
T PF00133_consen 164 NWCPSCQTALSDHEVEYKEVKSPSIYVKFPLKD 196 (601)
T ss_dssp EEETTTTEEE-GGGEEEEEEEEEEEEEEEEESS
T ss_pred CcCcccccchhhhhcccccccCceEEEEEEecC
Confidence 45555653 455555322223334557777654
No 108
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=96.77 E-value=0.08 Score=61.30 Aligned_cols=84 Identities=11% Similarity=0.068 Sum_probs=53.0
Q ss_pred CccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCC-CCcEEEeeeeecCC-C-CcccccCC--CCchHHHH
Q 008289 243 GQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFS-MPYFAHVSLILAPD-R-SKLSKRHG--ATSVGQFR 317 (571)
Q Consensus 243 G~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~-~P~f~H~pli~~~~-g-~KLSKR~g--~~~v~~~r 317 (571)
|..+|-.--+.|-...+.++|.-|.|-...--.-..+.+.+|.. .|...|.++|.+-+ | +||||+.+ .+.+.+
T Consensus 159 gll~YPvLQAADIl~l~adivpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D-- 236 (682)
T PTZ00348 159 AQVLYPLMQCADIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED-- 236 (682)
T ss_pred HHHhhhHHHhhcccccCCCEEEeCccHHHHHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCeecccC--
Confidence 34455544555555667889999998431111112334567853 57767779988875 3 69999984 355554
Q ss_pred HCCCCHHHHHHHHHH
Q 008289 318 EMGYLPQAMVNYLAL 332 (571)
Q Consensus 318 ~~G~~Peai~n~l~~ 332 (571)
.|+.|..-+..
T Consensus 237 ----spe~I~kKI~k 247 (682)
T PTZ00348 237 ----TEEDVARKIRQ 247 (682)
T ss_pred ----CHHHHHHHHHh
Confidence 78888777764
No 109
>PLN02959 aminoacyl-tRNA ligase
Probab=95.42 E-value=0.06 Score=65.69 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=34.8
Q ss_pred EEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhC
Q 008289 290 FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLG 334 (571)
Q Consensus 290 f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG 334 (571)
+...++|+ .+|+||||+.|+ ++..++.+. |-+++++-||+..|
T Consensus 706 v~v~G~V~-~~G~KMSKSkGNvI~p~diI~k-yGADalRl~la~~~ 749 (1084)
T PLN02959 706 FRCNGHLM-LNSEKMSKSTGNFLTLRQAIEE-FSADATRFALADAG 749 (1084)
T ss_pred EEEccEEe-cCCcCccccCCCcCCHHHHHHH-hCchHHHHHHhhcC
Confidence 55667765 799999999998 777777765 88999999998653
No 110
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.03 E-value=0.046 Score=63.61 Aligned_cols=89 Identities=31% Similarity=0.419 Sum_probs=69.7
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcccC---------------------------------cHH
Q 008289 61 APSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLERS---------------------------------TKE 105 (571)
Q Consensus 61 APSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~R~---------------------------------~~~ 105 (571)
+|..||.||||||-|..+-...||. ..|.-+|=+-.||.+-- .++
T Consensus 83 PPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e 162 (995)
T KOG0432|consen 83 PPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEE 162 (995)
T ss_pred CCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHH
Confidence 4467899999999999999999986 45888888888887311 256
Q ss_pred HHHHHHHHHHHcC--CCCCCCCCCCCCccceecc--ccHHHHHHHHHHHHHcCCccc
Q 008289 106 SEEAVLQDLSWLG--LDWDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 106 ~~~~i~~~L~wlG--l~~Degp~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 158 (571)
+-..|.+.|+.|| ++||.. ++.- ++-..-.++..+|-++|..|+
T Consensus 163 ~g~~I~~Qlk~lGas~DW~re---------~fTmD~~~s~AV~eAFvrL~eeglIyR 210 (995)
T KOG0432|consen 163 YGGRIYNQLKRLGASLDWDRE---------AFTMDPKLSRAVTEAFVRLHEEGLIYR 210 (995)
T ss_pred hCccHHHHHHHhcCcccccHh---------hcccCHHHHHHHHHHHHHHHhcCceEe
Confidence 6678999999999 468764 2322 355567789999999999998
No 111
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.86 E-value=0.037 Score=62.71 Aligned_cols=99 Identities=25% Similarity=0.350 Sum_probs=69.3
Q ss_pred CCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcC--CeEEEE----------ec------CCCcccCcHHHHHHHHHHH
Q 008289 53 DGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKG--GKFVLR----------IE------DTDLERSTKESEEAVLQDL 114 (571)
Q Consensus 53 ~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~--G~fiLR----------ie------DTD~~R~~~~~~~~i~~~L 114 (571)
+.+.+.--=|.|+|.|||||.|...+....||.+. |.=++. -| .++|+--+...++.+.+-|
T Consensus 57 k~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql 136 (876)
T KOG0435|consen 57 KKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQL 136 (876)
T ss_pred CCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHH
Confidence 34577888899999999999999999999999643 444432 22 3455555788899999999
Q ss_pred HHcCCC--CCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCccc
Q 008289 115 SWLGLD--WDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 115 ~wlGl~--~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~ 158 (571)
.-||+. ||.+-..- .| +...--+-..-+|.++|.||.
T Consensus 137 ~~lg~~FDWdrEiSTC---~P----dYYKWTQwiFlkLfe~GLAYq 175 (876)
T KOG0435|consen 137 KSLGISFDWDREISTC---EP----DYYKWTQWIFLKLFEKGLAYQ 175 (876)
T ss_pred HHcCcccccccccccC---Cc----chhHHHHHHHHHHHHhhhhhc
Confidence 999974 77642110 11 122222335568999999997
No 112
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=94.83 E-value=0.12 Score=56.04 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=47.0
Q ss_pred cccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCCcccccCC
Q 008289 245 PVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHG 309 (571)
Q Consensus 245 PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g 309 (571)
.+|.+--+.|=...+.+.++-|.|-..|.-.=..|.+-++-..+.-...|++.+.+|.||||+.|
T Consensus 163 f~YpllQa~D~~~l~~di~~gG~DQ~~ni~~g~dLar~~~~~~~~~~t~pLl~~~dg~KmgKS~~ 227 (377)
T TIGR00234 163 FIYPLLQAYDFVYLNVDLQIGGSDQWGNIRKGRDLIRRNLPSLGFGLTVPLLTPADGEKMGKSGG 227 (377)
T ss_pred hhhHHHHHHHHHHHcCCeeEecchhHHHHHHHHHHHHHhcCCCceeeceeeecCCCCCCccCCCC
Confidence 55655556666666677888899987766555566666665545556789998999999999965
No 113
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=94.00 E-value=0.22 Score=60.16 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=63.2
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEec-------------------------------CCC----
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIE-------------------------------DTD---- 98 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRie-------------------------------DTD---- 98 (571)
+.+==.|.|||.|||||++|.+.-..+||. ..|.=+|..= |++
T Consensus 28 ~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i 107 (938)
T TIGR00395 28 FLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREEL 107 (938)
T ss_pred EEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHH
Confidence 334445799999999999999999998886 3455554311 111
Q ss_pred -----cccCcHHHHHHHHHHHHHcCCC--CCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCccc
Q 008289 99 -----LERSTKESEEAVLQDLSWLGLD--WDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 99 -----~~R~~~~~~~~i~~~L~wlGl~--~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (571)
+.--...+.+.+.++++.||+. |+. +|...+ +...-+....+|.++|++|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r---------~~~T~dp~y~~~v~~~f~~L~e~G~iy~ 167 (938)
T TIGR00395 108 LKFTDPEYIVEYFSREAESACKSMGYSIDWRR---------SFKTTDPYYDRFIEWQMNKLKELGLIVK 167 (938)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHhCceEECCC---------CccCCChhHHHHHHHHHHHHHHCCCEec
Confidence 1111245567899999999975 665 344443 34445566778999999987
No 114
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=93.54 E-value=0.26 Score=59.78 Aligned_cols=88 Identities=15% Similarity=0.061 Sum_probs=58.1
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHHH---HhCCCCC-cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHH
Q 008289 258 MAISHVIRAEEHLPNTLRQALIYK---ALGFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 258 m~ItHVIRG~Dhl~ntp~q~~l~~---alg~~~P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~ 332 (571)
.-.+.++=|.|++..= .+.++.- .+|-.++ ....++++++.+|+||||+.|+ ++..++.++ |-++|++-||+.
T Consensus 544 ~Pad~~~~G~Di~r~W-f~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR~~lls 621 (975)
T PRK06039 544 FPADFIVEGIDQTRGW-FYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDK-YGADALRWYLLS 621 (975)
T ss_pred CCceEEEechhhHhhH-HHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHH-hChHHHHHHHHh
Confidence 4455566688887432 2222221 2344333 4556788889999999999998 777777776 889999999988
Q ss_pred hCCCCCCCcccCCHHHH
Q 008289 333 LGWGDGTENEFFTLKQL 349 (571)
Q Consensus 333 lG~~~~~~~e~~s~~el 349 (571)
.+. ...+-.|+.+.+
T Consensus 622 ~~~--~~~D~~fs~~~~ 636 (975)
T PRK06039 622 SSA--PWEDLRFSEDGV 636 (975)
T ss_pred CCC--CCCCceechhHH
Confidence 764 123345666663
No 115
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=93.43 E-value=0.25 Score=59.04 Aligned_cols=87 Identities=14% Similarity=0.086 Sum_probs=57.3
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHH---hCCCCC-cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHh
Q 008289 259 AISHVIRAEEHLPNTLRQALIYKA---LGFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALL 333 (571)
Q Consensus 259 ~ItHVIRG~Dhl~ntp~q~~l~~a---lg~~~P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~l 333 (571)
..+..+-|.|++.+ =.|..++-+ +|..+| .+.-++++++.+|+||||++|+ ++..++.+. |-+++++-|++..
T Consensus 564 P~d~~i~G~Di~r~-Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~-yGaDalR~~ll~~ 641 (861)
T TIGR00392 564 PADFILEGSDQTRG-WFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINK-YGADILRLYVASS 641 (861)
T ss_pred CceEEEEecchhcc-HHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHH-cCHHHHHHHHHhC
Confidence 45566668888643 133333332 355554 3444677788899999999998 777777765 8899999999866
Q ss_pred CCCCCCCcccCCHHHHH
Q 008289 334 GWGDGTENEFFTLKQLV 350 (571)
Q Consensus 334 G~~~~~~~e~~s~~eli 350 (571)
. ..++-.|+.+.+.
T Consensus 642 ~---~~~D~~fs~~~l~ 655 (861)
T TIGR00392 642 D---PWEDLRFSDEILK 655 (861)
T ss_pred C---CCCCceECHHHHH
Confidence 2 2234456666553
No 116
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=93.27 E-value=0.51 Score=56.77 Aligned_cols=102 Identities=23% Similarity=0.266 Sum_probs=68.7
Q ss_pred CchhhHHHHHHHHHHHHH--cCCeEEEEecCCCc-----c-----------------------------------cCcHH
Q 008289 68 LHVGGARTALFNYLFARS--KGGKFVLRIEDTDL-----E-----------------------------------RSTKE 105 (571)
Q Consensus 68 LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~-----~-----------------------------------R~~~~ 105 (571)
|||||+++.+.-..+||. ..|.-+|+.=..|- + .....
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 799999999999999996 46887777533331 0 01123
Q ss_pred HHHHHHHHHHHcCC--CCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCC
Q 008289 106 SEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPV 181 (571)
Q Consensus 106 ~~~~i~~~L~wlGl--~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~ 181 (571)
+.+.+.++++.||+ +|+. +|...+ ..+.-+....+|.++|++|+-. .+-.
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r---------~y~T~dp~y~~~v~w~F~~L~ekGliyrg~-----------------~~v~ 134 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRR---------EFTTTDPEYSKFIEWQFRKLKEKGLIVKGS-----------------HPVR 134 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCC---------CeECCChhHHHHHHHHHHHHHHCCCEecCC-----------------Eeee
Confidence 44778999999996 5775 466554 3334445677899999999621 2445
Q ss_pred CCCcCCC-CCHHHHH
Q 008289 182 YTGKWAT-ATDAEVQ 195 (571)
Q Consensus 182 Y~g~cr~-l~~~e~~ 195 (571)
|+-.|.. ++..|+.
T Consensus 135 wcp~~~t~lad~e~~ 149 (897)
T PRK12300 135 YCPNDNNPVGDHDLL 149 (897)
T ss_pred eCCCCCCCchHHHHh
Confidence 7666754 5666654
No 117
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.81 E-value=0.28 Score=58.57 Aligned_cols=127 Identities=25% Similarity=0.391 Sum_probs=83.0
Q ss_pred EeCCCCCCcCchhhHHHHHHHHHHHHHcC--CeEEEE-------------------------ecCCCcc-------cCcH
Q 008289 59 RFAPSPTGNLHVGGARTALFNYLFARSKG--GKFVLR-------------------------IEDTDLE-------RSTK 104 (571)
Q Consensus 59 RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~--G~fiLR-------------------------ieDTD~~-------R~~~ 104 (571)
==+|..||.+|||||.+=++-....|.+. |.-+-| |++...+ ....
T Consensus 55 DGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~ 134 (933)
T COG0060 55 DGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFAL 134 (933)
T ss_pred CCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHH
Confidence 34799999999999999999888877633 322222 2332221 1135
Q ss_pred HHHHHHHHHHHHcCC--CCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCC
Q 008289 105 ESEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPP 180 (571)
Q Consensus 105 ~~~~~i~~~L~wlGl--~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~ 180 (571)
++++...++++.||+ +||. ||..-+ ..+.--....++.++|+.|+-+ +|-
T Consensus 135 ~~v~~q~~~f~RLGv~~Dw~n---------pY~Tmd~~ye~~~~~~f~~~~~kGllyrg~-----------------Kpv 188 (933)
T COG0060 135 EQVDEQKEQFKRLGVWGDWEN---------PYKTMDPSYEESVWWAFKELYEKGLLYRGY-----------------KPV 188 (933)
T ss_pred HHHHHHHHHHHhheEeeccCC---------CeecCCHHHHHHHHHHHHHHHHCCCeecCC-----------------eee
Confidence 778888999999996 5775 676653 4444456789999999999632 233
Q ss_pred CCCCcCCC-CCHHHHHHHHhcCCCceEEEecC
Q 008289 181 VYTGKWAT-ATDAEVQKELERGTPYTYRFRVP 211 (571)
Q Consensus 181 ~Y~g~cr~-l~~~e~~~~~~~g~~~~iR~k~~ 211 (571)
.|+-.|+. |++.|++..-...-.-.++|++.
T Consensus 189 ~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~ 220 (933)
T COG0060 189 PWSPRCETALAEAEVEYGDVKDPSIYVKFPVK 220 (933)
T ss_pred eecCCCCcchhhhhhcccccCCceEEEEEEec
Confidence 56667874 67777754222222234677774
No 118
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=92.57 E-value=0.48 Score=56.99 Aligned_cols=87 Identities=16% Similarity=0.158 Sum_probs=56.3
Q ss_pred CCCcEEEeCCCCCCC-HHHHHHHHHHhCC---CCC-cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHH
Q 008289 258 MAISHVIRAEEHLPN-TLRQALIYKALGF---SMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLA 331 (571)
Q Consensus 258 m~ItHVIRG~Dhl~n-tp~q~~l~~alg~---~~P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~ 331 (571)
.-.+..+=|.|++.+ ....+.+ .+..+ +.| .+.+++++++ +|+||||+.|+ ++..++.+. |-+++++-||+
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~~~-~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~~-yGaDalRl~L~ 605 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFIFN-HVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIEE-YGADVVRLYLT 605 (897)
T ss_pred CCceEEEeeeccCccHHHHHHHH-HHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHHH-cChHHHHHHHH
Confidence 345556668998854 1111222 22223 345 5678899887 89999999998 677777765 88999999998
Q ss_pred HhCCCCCCCcccCCHHHH
Q 008289 332 LLGWGDGTENEFFTLKQL 349 (571)
Q Consensus 332 ~lG~~~~~~~e~~s~~el 349 (571)
..|-. .++-.|+.+.+
T Consensus 606 ~~~~~--~~D~~fs~~~v 621 (897)
T PRK12300 606 SSAEL--LQDADWREKEV 621 (897)
T ss_pred hCCCC--CCCCccCHHHH
Confidence 75421 22344565544
No 119
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.25 E-value=0.28 Score=53.50 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=43.0
Q ss_pred cchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCCcccccCCC
Q 008289 247 YNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGA 310 (571)
Q Consensus 247 Y~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g~ 310 (571)
|.+--+-|=...+..--|=|.|-..|--.=+-+.+.+|...|.-.|+|||.+.+|+||||..|.
T Consensus 168 YpLmQayD~~~L~~dlq~GG~DQ~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG~KmgKs~~~ 231 (401)
T COG0162 168 YPLLQAYDFVYLNKDLQLGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGG 231 (401)
T ss_pred hHHHHHHHHHHHccchhcCChHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCcccccCCC
Confidence 3333333333333333355777665554445566778997777789999999999999999876
No 120
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.79 E-value=5.6 Score=43.72 Aligned_cols=50 Identities=28% Similarity=0.338 Sum_probs=37.2
Q ss_pred CCCCCCCceEEEeCCCCC--CcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCC
Q 008289 48 NTNKVDGQVRVRFAPSPT--GNLHVGGARTALFNYLFARS--KGGKFVLRIEDTD 98 (571)
Q Consensus 48 ~~~~~~~~vr~RFAPSPt--G~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD 98 (571)
.|......|.|-|. ||+ --||+||+|+-++-.-++|- +-|-=+||+.-+.
T Consensus 182 ~P~l~~KrvlVDFS-SPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvG 235 (656)
T KOG4426|consen 182 LPTLSVKRVLVDFS-SPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVG 235 (656)
T ss_pred CcccceeeEEEecC-CCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeecccc
Confidence 44444567888885 666 78999999999998888885 4566677766543
No 121
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=91.69 E-value=0.52 Score=54.17 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=52.5
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHH-HHhCCCC--CcEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHh
Q 008289 258 MAISHVIRAEEHLPNTLRQALIY-KALGFSM--PYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALL 333 (571)
Q Consensus 258 m~ItHVIRG~Dhl~ntp~q~~l~-~alg~~~--P~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~l 333 (571)
.-++-.+-|.|++.+=.....+. -++--.. +....++++++.+|+||||++|+ ++..++.++ |-.++++-|++..
T Consensus 513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lRl~~~~~ 591 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIEK-YGADALRLWLASS 591 (601)
T ss_dssp SSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHHH-T-HHHHHHHHHHH
T ss_pred CCcccccCCccchhhHHHHhHhhccccccCCchheeeecccccccceeecccCCCcccCHHHHHHH-hCcHHHHHHHHhc
Confidence 56888888999997643333333 3443333 45777899999999999999998 677777775 8899999999865
Q ss_pred C
Q 008289 334 G 334 (571)
Q Consensus 334 G 334 (571)
+
T Consensus 592 ~ 592 (601)
T PF00133_consen 592 A 592 (601)
T ss_dssp S
T ss_pred C
Confidence 4
No 122
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=90.86 E-value=0.96 Score=54.56 Aligned_cols=87 Identities=10% Similarity=0.046 Sum_probs=55.8
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHHHH---hCCCCC-cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHH
Q 008289 258 MAISHVIRAEEHLPNTLRQALIYKA---LGFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 258 m~ItHVIRG~Dhl~ntp~q~~l~~a---lg~~~P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~ 332 (571)
.-.+-.+=|.|++.. =.|..++.+ .|..+| ....++++++.+|+||||+.|+ ++..++.+. |-+++++-|++.
T Consensus 544 ~P~Dl~~~G~Di~r~-Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~-yGaDalR~~ll~ 621 (912)
T PRK05743 544 YPADLYLEGSDQHRG-WFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKK-YGADILRLWVAS 621 (912)
T ss_pred CCceEEEecccccch-HHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHh-cChHHHHHHHHh
Confidence 345555668888732 223333332 355555 3456789899999999999998 666676654 889999999985
Q ss_pred hCCCCCCCcccCCHHHH
Q 008289 333 LGWGDGTENEFFTLKQL 349 (571)
Q Consensus 333 lG~~~~~~~e~~s~~el 349 (571)
+ .+ .++-.|+.+.+
T Consensus 622 -~-~~-~~D~~~s~~~l 635 (912)
T PRK05743 622 -T-DY-SGDVRISDEIL 635 (912)
T ss_pred -c-CC-CCCeeecHHHH
Confidence 2 22 23344555443
No 123
>PLN02943 aminoacyl-tRNA ligase
Probab=89.91 E-value=0.8 Score=55.48 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=43.5
Q ss_pred cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHH
Q 008289 289 YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQL 349 (571)
Q Consensus 289 ~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~el 349 (571)
.+.-++++++.+|+||||+.|+ ++..++.+. |-|++++-||+..+. ..+-.|+.+.+
T Consensus 569 ~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~-ygaDalR~~l~~~~~---~~d~~fs~~~l 626 (958)
T PLN02943 569 YVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKE-FGTDALRFTLALGTA---GQDLNLSTERL 626 (958)
T ss_pred eEEEeccEECCCCCcccCcCCCCCCHHHHHHh-cCChHHHHHHHhCCC---CCCccccHHHH
Confidence 3555677789999999999998 778888776 899999999986443 23455676655
No 124
>PLN02882 aminoacyl-tRNA ligase
Probab=89.71 E-value=1.2 Score=55.14 Aligned_cols=74 Identities=16% Similarity=0.124 Sum_probs=49.1
Q ss_pred CcEEEeCCCCCCCHHHHHHHHH--HhCCCCCc-EEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhC
Q 008289 260 ISHVIRAEEHLPNTLRQALIYK--ALGFSMPY-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLG 334 (571)
Q Consensus 260 ItHVIRG~Dhl~ntp~q~~l~~--alg~~~P~-f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG 334 (571)
.+.++-|.|-+..=+.-.++.. .+|..+|. ..+++++++.+|+||||+.|+ +...++.++ |-++|++-||+...
T Consensus 568 aD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~-YGADaLR~~Ll~s~ 645 (1159)
T PLN02882 568 ADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDK-YGADALRLYLINSP 645 (1159)
T ss_pred ceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHH-hCcHHHHHHHHhCC
Confidence 4555556666643111111111 23666663 567899999999999999998 566666554 77999999998543
No 125
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.66 E-value=1.3 Score=52.53 Aligned_cols=89 Identities=18% Similarity=0.139 Sum_probs=59.4
Q ss_pred CCcEEEeCCCCCC-CHHHHHHHHHHhCCCCCc--EEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhC
Q 008289 259 AISHVIRAEEHLP-NTLRQALIYKALGFSMPY--FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLG 334 (571)
Q Consensus 259 ~ItHVIRG~Dhl~-ntp~q~~l~~alg~~~P~--f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG 334 (571)
-.+-.+-|-|-+. -..+.+++--.|.-+.|. ..-++|+++.+|+||||++|+ +...++.++ |=.+|++-+|+.++
T Consensus 478 Pt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~-yGaDAlRf~la~~~ 556 (877)
T COG0525 478 PTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDK-YGADALRFTLASLA 556 (877)
T ss_pred CCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHH-hChHHHHHHHHhcc
Confidence 3444555777553 345555555566666773 345689999999999999998 555555553 66899999998876
Q ss_pred CCCCCCcccCCHHHHH
Q 008289 335 WGDGTENEFFTLKQLV 350 (571)
Q Consensus 335 ~~~~~~~e~~s~~eli 350 (571)
. ++ .+-.|+.+.+.
T Consensus 557 ~-~G-~Di~~~~~~~~ 570 (877)
T COG0525 557 S-PG-RDINFDEKRVE 570 (877)
T ss_pred C-CC-cccCcCHHHHH
Confidence 4 22 34556666553
No 126
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=88.15 E-value=2.1 Score=52.06 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=53.3
Q ss_pred cEEEeCCCCCCCHHHHHHHHHHh---CCCCC-cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCC
Q 008289 261 SHVIRAEEHLPNTLRQALIYKAL---GFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGW 335 (571)
Q Consensus 261 tHVIRG~Dhl~ntp~q~~l~~al---g~~~P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~ 335 (571)
+..+=|.|.+. .=.|..+..++ |..+| ...-++++++.+|+||||+.|+ ++..++.+ .|-+++++-|++...
T Consensus 585 D~~~eG~Di~r-gWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~-~yGaD~lRl~lls~~- 661 (961)
T PRK13804 585 DLYLEGSDQHR-GWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIK-QSGADILRLWVASVD- 661 (961)
T ss_pred eEEEEEccccc-HHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHH-hcCHHHHHHHHHhCC-
Confidence 34455777652 12333444443 33343 3444588899999999999998 67777765 488999999998632
Q ss_pred CCCCCcccCCHHHH
Q 008289 336 GDGTENEFFTLKQL 349 (571)
Q Consensus 336 ~~~~~~e~~s~~el 349 (571)
+ .++-.||.+.+
T Consensus 662 -~-~~D~~fs~~~l 673 (961)
T PRK13804 662 -Y-SDDQRIGKEIL 673 (961)
T ss_pred -C-CCCcccCHHHH
Confidence 2 23344665543
No 127
>PLN02843 isoleucyl-tRNA synthetase
Probab=87.97 E-value=2 Score=52.28 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=47.5
Q ss_pred EEEeCCCCCCCHHHHHHHH--H-HhCCCCC-cEEEeeeeecCCCCcccccCCC-CchHHHHHC--------CCCHHHHHH
Q 008289 262 HVIRAEEHLPNTLRQALIY--K-ALGFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREM--------GYLPQAMVN 328 (571)
Q Consensus 262 HVIRG~Dhl~ntp~q~~l~--~-alg~~~P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~--------G~~Peai~n 328 (571)
..+=|.|.+.. =.|..++ - +.|..++ .+.-++++++.+|+||||+.|+ ++..++.+. -|-+++++-
T Consensus 567 l~~eG~Di~rg-Wf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~ 645 (974)
T PLN02843 567 LYLEGSDQHRG-WFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRL 645 (974)
T ss_pred eeeeeccccch-HHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHHH
Confidence 33446666531 1233232 2 3354333 3444489899999999999998 677777773 388999999
Q ss_pred HHHHhCC
Q 008289 329 YLALLGW 335 (571)
Q Consensus 329 ~l~~lG~ 335 (571)
|++...+
T Consensus 646 ~l~~~~~ 652 (974)
T PLN02843 646 WVASVDY 652 (974)
T ss_pred HHHhccc
Confidence 9986443
No 128
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=87.49 E-value=1.4 Score=53.91 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=43.9
Q ss_pred CCC--cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHH
Q 008289 286 SMP--YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQL 349 (571)
Q Consensus 286 ~~P--~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~el 349 (571)
..| ...-++++++.+|+||||+.|+ ++..++.+. |-+++++-||+..+- ..++-.|+.+.+
T Consensus 519 ~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~-yGaDalR~~L~~~~~--~g~D~~fs~~~l 582 (1052)
T PRK14900 519 EVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQ-YGADALRFTLAALTA--QGRDIKLAKERI 582 (1052)
T ss_pred CCccceeEecccEECCCCCCccCCCCCCCCHHHHHHH-hCcHHHHHHHHhcCC--CCCCCcccHHHH
Confidence 445 3566789899999999999998 677777664 789999999987542 122334665543
No 129
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=84.49 E-value=2.5 Score=36.89 Aligned_cols=60 Identities=32% Similarity=0.519 Sum_probs=38.0
Q ss_pred EEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccC------cHHHHHHHHHHHHHcCCCCC
Q 008289 58 VRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERS------TKESEEAVLQDLSWLGLDWD 122 (571)
Q Consensus 58 ~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~------~~~~~~~i~~~L~wlGl~~D 122 (571)
+.|+.+| |++|+||...+-. |+....+.++.|.|..+... .++..+.+....--.|++|-
T Consensus 2 ~~~~G~F-dp~H~GH~~l~~~----a~~~~d~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~~~~~~G~~~~ 67 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKLICR----AKGIADQCVVRIDDNPPVKVWQDPHELEERKESIEEDISVCGEDFQ 67 (105)
T ss_pred EEeCCCC-CCCCHHHHHHHHH----HHHhCCcEEEEEcCCCcccccCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 6789999 9999999986333 22333679999998876653 22333344444444455543
No 130
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=82.16 E-value=3 Score=50.89 Aligned_cols=76 Identities=16% Similarity=0.041 Sum_probs=47.5
Q ss_pred CCcEEEeCCCCCC-CHHHHHHHHHHhCCCCC--cEEEeeeeecCCCCcccccCCC-CchHHHHHC---------------
Q 008289 259 AISHVIRAEEHLP-NTLRQALIYKALGFSMP--YFAHVSLILAPDRSKLSKRHGA-TSVGQFREM--------------- 319 (571)
Q Consensus 259 ~ItHVIRG~Dhl~-ntp~q~~l~~alg~~~P--~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~--------------- 319 (571)
-.+..+-|-|.+. -..+.+++--+|.-..| ....+++|++.+|+||||+.|+ ++-.++.+.
T Consensus 538 P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~ 617 (995)
T PTZ00419 538 PTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNL 617 (995)
T ss_pred CCcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhcccc
Confidence 4555555766542 01111211122222566 4678899999999999999998 444444441
Q ss_pred ---------------------CCCHHHHHHHHHHhC
Q 008289 320 ---------------------GYLPQAMVNYLALLG 334 (571)
Q Consensus 320 ---------------------G~~Peai~n~l~~lG 334 (571)
-|-.+|++-||+..+
T Consensus 618 ~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~ 653 (995)
T PTZ00419 618 PEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYT 653 (995)
T ss_pred chhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcC
Confidence 367899999998754
No 131
>PLN02959 aminoacyl-tRNA ligase
Probab=80.70 E-value=3.1 Score=51.19 Aligned_cols=40 Identities=28% Similarity=0.164 Sum_probs=31.5
Q ss_pred CceEEEeC-CCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEE
Q 008289 54 GQVRVRFA-PSPTGNLHVGGARTALFNYLFARS--KGGKFVLR 93 (571)
Q Consensus 54 ~~vr~RFA-PSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLR 93 (571)
.+..+=++ |.+||.|||||++|...-..+||. ..|.-+|.
T Consensus 45 ~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlf 87 (1084)
T PLN02959 45 EKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLL 87 (1084)
T ss_pred CcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCC
Confidence 44567777 899999999999999999888886 34555543
No 132
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=80.27 E-value=2.8 Score=50.19 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=52.9
Q ss_pred cCCCcEEEeCCCCCCC-----HHHHHHHHHH--hCCCCC--cEEEeeeeec----CCCC---------------------
Q 008289 257 TMAISHVIRAEEHLPN-----TLRQALIYKA--LGFSMP--YFAHVSLILA----PDRS--------------------- 302 (571)
Q Consensus 257 ~m~ItHVIRG~Dhl~n-----tp~q~~l~~a--lg~~~P--~f~H~pli~~----~~g~--------------------- 302 (571)
.|-++..|-|.||... ..-|..|+.. +.-..| ....++++++ .+|+
T Consensus 518 ~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 597 (842)
T TIGR00396 518 WLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGEL 597 (842)
T ss_pred cCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCcc
Confidence 4667777778887422 2233333331 122345 3456788888 8888
Q ss_pred ------cccccCCC-CchHHHHHCCCCHHHHHHHHHHhC
Q 008289 303 ------KLSKRHGA-TSVGQFREMGYLPQAMVNYLALLG 334 (571)
Q Consensus 303 ------KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG 334 (571)
||||+.|+ +++.++.++ |-++|++-|++..+
T Consensus 598 ~~~~~~KMSKS~GN~v~p~~ii~~-ygaDalRl~~l~~~ 635 (842)
T TIGR00396 598 VVVGYEKMSKSKGNGIDPQEIVKK-HGADALRLYIMFMG 635 (842)
T ss_pred cccchhhhhhcCCCcCCHHHHHHH-cCchHHHHHHHhcC
Confidence 99999998 788888776 88999999998654
No 133
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=78.97 E-value=5.6 Score=49.48 Aligned_cols=74 Identities=19% Similarity=0.125 Sum_probs=47.2
Q ss_pred CcEEEeCCCCCCC-HHHHHHHHHHhCCCCC--cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhC
Q 008289 260 ISHVIRAEEHLPN-TLRQALIYKALGFSMP--YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLG 334 (571)
Q Consensus 260 ItHVIRG~Dhl~n-tp~q~~l~~alg~~~P--~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG 334 (571)
.+.++-|-|.+.. -...+.+--++--..| ...-++++++.+|+||||+.|+ +.-.++.+ .|-++|++-||+..+
T Consensus 674 aD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~-kYGADaLR~~Lls~~ 751 (1205)
T PTZ00427 674 ADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILD-KYGADSLRLYLINSV 751 (1205)
T ss_pred ceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHH-hcCCcHHHHHHHhcC
Confidence 4455557666532 2222333333333455 3455689999999999999998 45445544 367899999998653
No 134
>PLN02381 valyl-tRNA synthetase
Probab=77.86 E-value=8.7 Score=47.32 Aligned_cols=78 Identities=17% Similarity=0.031 Sum_probs=49.8
Q ss_pred CCCcEEEeCCCCCCCHH-HHHHHHHHhCCCCC--cEEEeeeeecCCCCcccccCCC-CchHHHHHC--------------
Q 008289 258 MAISHVIRAEEHLPNTL-RQALIYKALGFSMP--YFAHVSLILAPDRSKLSKRHGA-TSVGQFREM-------------- 319 (571)
Q Consensus 258 m~ItHVIRG~Dhl~ntp-~q~~l~~alg~~~P--~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~-------------- 319 (571)
.-.+..+-|-|.+--=. +.+.+--++.-..| ...-+++|++.+|+||||+.|+ +.-.++.+.
T Consensus 607 ~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~ 686 (1066)
T PLN02381 607 YPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGN 686 (1066)
T ss_pred CCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccc
Confidence 44666666777663211 12222123444556 3556799999999999999998 454555442
Q ss_pred ----------------------CCCHHHHHHHHHHhCC
Q 008289 320 ----------------------GYLPQAMVNYLALLGW 335 (571)
Q Consensus 320 ----------------------G~~Peai~n~l~~lG~ 335 (571)
-|=++|++-||+..+.
T Consensus 687 ~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~ 724 (1066)
T PLN02381 687 LDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTA 724 (1066)
T ss_pred cchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCc
Confidence 2678999999987654
No 135
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.88 E-value=2.4 Score=50.29 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=51.2
Q ss_pred hhcCCCcEEEeCCCCCCCHHHHHHHHH----Hh---C-CCC--Cc--EEEeeeeecCCCCcccccCCC-CchHHHHHCCC
Q 008289 255 DATMAISHVIRAEEHLPNTLRQALIYK----AL---G-FSM--PY--FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGY 321 (571)
Q Consensus 255 D~~m~ItHVIRG~Dhl~ntp~q~~l~~----al---g-~~~--P~--f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~ 321 (571)
++-+-|+-=|-|.||. +-|++.+. +| | |+. |. -..-++++..+|+||||++|+ ++.++..++ |
T Consensus 522 ~yW~PVD~yigG~eha---vlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~-y 597 (814)
T COG0495 522 NYWYPVDLYIGGIEHA---VLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEK-Y 597 (814)
T ss_pred hcccChheeecchhHH---HHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHH-h
Confidence 3445666666688877 45554432 32 2 332 31 345577777789999999998 677777665 6
Q ss_pred CHHHHHHHHHHhC
Q 008289 322 LPQAMVNYLALLG 334 (571)
Q Consensus 322 ~Peai~n~l~~lG 334 (571)
=+++++-|++..|
T Consensus 598 GADt~Rl~~m~~a 610 (814)
T COG0495 598 GADTVRLYIMFAA 610 (814)
T ss_pred CchHHHHHHHhhC
Confidence 7899999998876
No 136
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=71.23 E-value=7.6 Score=46.34 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=48.6
Q ss_pred CCCcEEEeCCCCCCC-----HHHHHHHHHH--hCCCCC--cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHH
Q 008289 258 MAISHVIRAEEHLPN-----TLRQALIYKA--LGFSMP--YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMV 327 (571)
Q Consensus 258 m~ItHVIRG~Dhl~n-----tp~q~~l~~a--lg~~~P--~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~ 327 (571)
+-++..+-|.||..+ .--|..|+.. +.-..| ...|.+++ ||||+.|+ ++..++.++ |-+++++
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v------KMSKS~GN~i~p~~~i~~-ygaD~lR 594 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV------KMSKSKGNVVDPDDIIEK-YGADTAR 594 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcE------EeCCCCCCCCCHHHHHHH-cChHHHH
Confidence 567878888888643 2233233221 112345 56788887 99999998 778887775 8999999
Q ss_pred HHHHHhC
Q 008289 328 NYLALLG 334 (571)
Q Consensus 328 n~l~~lG 334 (571)
-|++..|
T Consensus 595 l~l~~~~ 601 (805)
T PRK00390 595 LFEMFAG 601 (805)
T ss_pred HHHHhcC
Confidence 9998764
No 137
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=66.59 E-value=11 Score=39.48 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=48.9
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHHc---CCeEEEEecCCCc------ccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCc
Q 008289 61 APSPTGNLHVGGARTALFNYLFARSK---GGKFVLRIEDTDL------ERSTKESEEAVLQDLSWLGLDWDEGPGVGGDY 131 (571)
Q Consensus 61 APSPtG~LHiG~~rtAl~n~l~Ar~~---~G~fiLRieDTD~------~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~ 131 (571)
---|||-+||||-.-|+-+|.--... |-..++-|-|.-. .+.-.++.-.....|-..||++...-
T Consensus 19 GIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~------ 92 (347)
T KOG2713|consen 19 GIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSS------ 92 (347)
T ss_pred ccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccce------
Confidence 34799999999999999999765543 3336666666421 12334445555556667899988653
Q ss_pred cceecccc
Q 008289 132 GPYRQSER 139 (571)
Q Consensus 132 gpy~QSer 139 (571)
.|+||+=
T Consensus 93 -lF~QS~V 99 (347)
T KOG2713|consen 93 -LFVQSDV 99 (347)
T ss_pred -eeeeccc
Confidence 7889964
No 138
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=61.36 E-value=9.7 Score=45.93 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=31.6
Q ss_pred CCC--cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHH
Q 008289 286 SMP--YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 286 ~~P--~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~ 332 (571)
.+| ...-++++++.+|+||||+.|+ ++-.+..++ |=.++|+-|++.
T Consensus 583 ~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~-yGADiLRLwv~s 631 (933)
T COG0060 583 RAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDK-YGADILRLWVAS 631 (933)
T ss_pred CchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHh-hCchheeeeeee
Confidence 455 2355789999999999999998 444444432 446666666654
No 139
>PLN02563 aminoacyl-tRNA ligase
Probab=60.39 E-value=8.7 Score=46.74 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=26.3
Q ss_pred cccccCCC-CchHHHHHCCCCHHHHHHHHHHhC
Q 008289 303 KLSKRHGA-TSVGQFREMGYLPQAMVNYLALLG 334 (571)
Q Consensus 303 KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG 334 (571)
||||++|+ +...++.+. |=+++++-|++..+
T Consensus 723 KMSKSKGNvVdP~eiI~k-YGADaLRl~ll~~a 754 (963)
T PLN02563 723 KMSKSRGNVVNPDDVVSE-YGADSLRLYEMFMG 754 (963)
T ss_pred ccccccCCcCCHHHHHHH-cCcHHHHHHHHhCC
Confidence 99999998 677777665 78999999998765
No 140
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.59 E-value=65 Score=38.03 Aligned_cols=89 Identities=29% Similarity=0.524 Sum_probs=55.1
Q ss_pred CCCCcCchhhHHHHHHH-----HHHHHHcCCeEEEEecCCCc--------------c--------cC-----cHHHHHHH
Q 008289 63 SPTGNLHVGGARTALFN-----YLFARSKGGKFVLRIEDTDL--------------E--------RS-----TKESEEAV 110 (571)
Q Consensus 63 SPtG~LHiG~~rtAl~n-----~l~Ar~~~G~fiLRieDTD~--------------~--------R~-----~~~~~~~i 110 (571)
+.+|.||+|||+.-+.- |..|...+.-|++=+|.--- + |. -.++++..
T Consensus 65 danG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~AIk~Q 144 (937)
T KOG0433|consen 65 DANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQ 144 (937)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHH
Confidence 38999999999987754 44444444444442222110 0 10 14667777
Q ss_pred HHHHHHcCCC--CCCCCCCCCCccceecc--ccHHHHHHHHHHHHHcCCccccc
Q 008289 111 LQDLSWLGLD--WDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYRCF 160 (571)
Q Consensus 111 ~~~L~wlGl~--~Degp~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~Cf 160 (571)
++.++..|+- |.. ||..- +...---+...+|.++|.+|+-+
T Consensus 145 ~e~F~r~gv~aDW~n---------~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~ 189 (937)
T KOG0433|consen 145 MEAFRRWGVTADWEN---------PYVTKSPSYEAAQLDIFAKLYEKGLVYRSF 189 (937)
T ss_pred HHHHHHheeeccCCC---------ceeecChHHHHHHHHHHHHHHhccceeccC
Confidence 8888999985 653 55433 33333446677899999999844
No 141
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.41 E-value=21 Score=41.93 Aligned_cols=69 Identities=23% Similarity=0.313 Sum_probs=45.9
Q ss_pred CceEEEeC-CCCCCcCchhhHHHHH---HHHHHHHHcCCeEEE--EecCCCcccCcHHHHHHHHHHHHHcCCCCCCC
Q 008289 54 GQVRVRFA-PSPTGNLHVGGARTAL---FNYLFARSKGGKFVL--RIEDTDLERSTKESEEAVLQDLSWLGLDWDEG 124 (571)
Q Consensus 54 ~~vr~RFA-PSPtG~LHiG~~rtAl---~n~l~Ar~~~G~fiL--RieDTD~~R~~~~~~~~i~~~L~wlGl~~Deg 124 (571)
.+.-+-|+ |.-+|.||+||+.|+- |.-.|-|-+|-..++ -+-.|. -......+.+.+-++-+|-.+|-.
T Consensus 44 ~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTG--MPI~A~AdKLkrEie~fG~ppdf~ 118 (1080)
T KOG0437|consen 44 PKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTG--MPIKASADKLKREIELFGCPPDFP 118 (1080)
T ss_pred CceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCC--CccHHhHHHHHHHHHHhCCCCCCc
Confidence 34555554 7889999999999875 444454444433333 455554 345567778888889999888753
No 142
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.06 E-value=15 Score=43.78 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCC--cEEEeeeeecCCCCcccccCCC
Q 008289 273 TLRQALIYKALGFSMP--YFAHVSLILAPDRSKLSKRHGA 310 (571)
Q Consensus 273 tp~q~~l~~alg~~~P--~f~H~pli~~~~g~KLSKR~g~ 310 (571)
.+|+++|-..|.-+.| ...-+||+.|..|+||||+-|+
T Consensus 561 VaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGN 600 (995)
T KOG0432|consen 561 VARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGN 600 (995)
T ss_pred HHHHHHhhhhhcCCCCchheeechhhccccccccchhhcc
Confidence 4666666555554566 3455799999999999999997
No 143
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=37.17 E-value=73 Score=36.32 Aligned_cols=222 Identities=17% Similarity=0.190 Sum_probs=109.9
Q ss_pred ccHHHHHHHHHHHHHcCCcc---cccCCHHHHHHHHHHHH---hCCCCCCCCCcCCCCCHHHHHHHH----hcCCCceEE
Q 008289 138 ERNSLYKQYADKLLESGHVY---RCFCSNEELEKMKEIAK---LKQLPPVYTGKWATATDAEVQKEL----ERGTPYTYR 207 (571)
Q Consensus 138 er~~~Y~~~a~~Li~~G~AY---~Cfcs~eel~~~r~~~~---~~~~~~~Y~g~cr~l~~~e~~~~~----~~g~~~~iR 207 (571)
++-+.+..+.+.|---|.-+ +.+ +.+.++.+.+.+. .+|. -|.-.| +.+++++.- ..|.+-..|
T Consensus 47 ~~~e~~~~I~~dL~wLG~~~d~~~~~-qS~~~~~~~~~a~~Li~~G~--AY~c~c---s~eel~~~R~~~~~~g~~~~~R 120 (522)
T TIGR00440 47 EDPEYVESIKRDVEWLGFKWEGKIRY-SSDYFDELYRYAEELIKKGL--AYVDEL---TPEEIREYRGTLTDPGKNSPYR 120 (522)
T ss_pred CChHHHHHHHHHHHHcCCCCCCCceE-ccccHHHHHHHHHHHHHcCC--EEeecC---CHHHHHHhhhhcccCCCCCccc
Confidence 45566777777777667665 223 3444554444332 3343 465555 566654332 234433344
Q ss_pred EecCCCCceEEEeec-----------cceeecc--CCCCCCeEEEecCCccccchh--hhHhhhcCCCcEEEe----CCC
Q 008289 208 FRVPKGGSLKISDLI-----------RGEVSWN--LDTLGDFVIMRSNGQPVYNFC--VTVDDATMAISHVIR----AEE 268 (571)
Q Consensus 208 ~k~~~~~~~~~~D~v-----------~G~i~~~--~~~~~D~Vl~RsdG~PtY~fA--~vVDD~~m~ItHVIR----G~D 268 (571)
=..+++..-.|..|. |-++... +..+.|+|+.|.+-.|...-. .+| -=.....|+|- |--
T Consensus 121 ~~s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~n~~~rD~V~~Ri~~~~h~~~gdk~~i-yPtYdfa~~vdD~l~gIT 199 (522)
T TIGR00440 121 DRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGTKWCI-YPMYDFTHCISDAMENIT 199 (522)
T ss_pred CCCHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCCCceEeeeeEEEEecCCCCCCCCCeeE-EeCcCCceeehhccCCCc
Confidence 222221112222333 3334332 347899999998744322100 000 12345567773 555
Q ss_pred CCCCHHHH---HHHHHHhCCCCCcEEEeeeeecCCCCcccccCCCCc---hHHHHHCCCCHHHHHHHHHHhCCCCCCC--
Q 008289 269 HLPNTLRQ---ALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGATS---VGQFREMGYLPQAMVNYLALLGWGDGTE-- 340 (571)
Q Consensus 269 hl~ntp~q---~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g~~~---v~~~r~~G~~Peai~n~l~~lG~~~~~~-- 340 (571)
|.-.+--+ ..+|++|+...+.+.+ |.... -..|.--....| +..+.+.|+ .-||.++.-
T Consensus 200 HviRg~E~~~nt~~Y~~~~~~l~~~~~-P~~~~--F~rln~~~~kLSKRk~~~~V~~g~----------v~GWdDPRl~T 266 (522)
T TIGR00440 200 HSLCTLEFQDNRRLYDWVLDNIHIFPR-PAQYE--FSRLNLEGTVLSKRKLAQLVDDKF----------VRGWDDPRMPT 266 (522)
T ss_pred eEeecHhhhhcHHHHHHHHHhcCccCC-CceEE--EEEECCCCCCcccccchhccccCc----------ccCCCCCcccc
Confidence 55445443 3788999877665432 54331 112332111122 444555554 246655321
Q ss_pred -----cccCCHHHHHHhcC-ccccccCCCcccHHHHHHhhHHHHhc
Q 008289 341 -----NEFFTLKQLVEKFT-IERVNKSGAIFDSTKLRWMNGQHLRA 380 (571)
Q Consensus 341 -----~e~~s~~eli~~F~-~~~~~~s~~~fd~~kL~wlN~~~ir~ 380 (571)
+.-++.+ .+..|- .-..+++....++.+|..+|+..+-.
T Consensus 267 i~~lrrrG~~Pe-Ai~nfl~~lG~s~~~~~~e~~~l~~~~r~f~~~ 311 (522)
T TIGR00440 267 ISGLRRRGYTPA-SIREFCNRIGVTKQDNNIEVVRLESCIREDLNE 311 (522)
T ss_pred HHHHHHCCCCHH-HHHHHHHHhCCCCCCCceehhhHHHHHHHhhhh
Confidence 1112232 344443 33455556678999999999998864
No 144
>COG5477 Predicted small integral membrane protein [Function unknown]
Probab=32.91 E-value=51 Score=28.26 Aligned_cols=42 Identities=31% Similarity=0.407 Sum_probs=32.6
Q ss_pred HHHHHHHcCC--eEEEEecCCCcccCcHHHHHHHHHHHHHcCCC
Q 008289 79 NYLFARSKGG--KFVLRIEDTDLERSTKESEEAVLQDLSWLGLD 120 (571)
Q Consensus 79 n~l~Ar~~~G--~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~ 120 (571)
-|-+||-.|- +=+||||-|--.|---.-.-+-+-.|.|+|+-
T Consensus 32 vWE~arPggnpR~G~LrfeTTRGDRLFisLLgsAyIhLAWlGLv 75 (97)
T COG5477 32 VWEYARPGGNPRVGILRFETTRGDRLFISLLGSAYIHLAWLGLV 75 (97)
T ss_pred HHHHhCCCCCCceeeEEeeecccceehHHHHHHHHHHHHHHHhc
Confidence 4777776443 35899999998898777777777789999995
No 145
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=31.90 E-value=18 Score=31.41 Aligned_cols=45 Identities=16% Similarity=0.047 Sum_probs=29.6
Q ss_pred EEEeCCCCCCCHHHHHH--HHHHhCCCCCcEEEeeeeecCCCCcccccC
Q 008289 262 HVIRAEEHLPNTLRQAL--IYKALGFSMPYFAHVSLILAPDRSKLSKRH 308 (571)
Q Consensus 262 HVIRG~Dhl~ntp~q~~--l~~alg~~~P~f~H~pli~~~~g~KLSKR~ 308 (571)
|++||+|+..+-....+ ..+.|+ +.|....+|-.. .++..||||+
T Consensus 59 ~~~~G~~~~~~~~~e~~~~~n~~l~-~~~e~v~~~~~~-~~~~~iSSs~ 105 (105)
T cd02156 59 ISVCGEDFQQNRELYRWVKDNITLP-VDPEQVELPRLN-LETTVMSKRK 105 (105)
T ss_pred HHHHHhhhhhchhHHHHHHHhcCCC-CCCeEEEccccc-cCceeeccCC
Confidence 89999999876554443 112232 346667776632 5788999985
No 146
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=29.06 E-value=34 Score=32.82 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCcccccCCH
Q 008289 143 YKQYADKLLESGHVYRCFCSN 163 (571)
Q Consensus 143 Y~~~a~~Li~~G~AY~Cfcs~ 163 (571)
-.+.|++|.+.|+.|+|.||.
T Consensus 116 Q~ELA~qL~~egyL~~C~ps~ 136 (170)
T KOG3349|consen 116 QLELAKQLAEEGYLYYCTPST 136 (170)
T ss_pred HHHHHHHHHhcCcEEEeeccc
Confidence 358999999999999999886
No 147
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=27.01 E-value=5.5e+02 Score=26.31 Aligned_cols=106 Identities=19% Similarity=0.107 Sum_probs=63.7
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEe-cCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccc
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRI-EDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRi-eDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gp 133 (571)
+...|..|+.+ +.+. ++..++ ++.|.+.+-=+ +|.+ .-....+.+.+.++-.|+..-.. .+
T Consensus 135 ~~~fr~~p~~~---~~~~---a~~~~~--~~~~~~~v~~l~~~~~---~g~~~~~~~~~~~~~~gi~v~~~-------~~ 196 (348)
T cd06350 135 PSFFRTVPSDT---SQAL---AIVALL--KHFGWTWVGLVYSDDD---YGRSGLSDLEEELEKNGICIAFV-------EA 196 (348)
T ss_pred CCeeEecCCcH---HHHH---HHHHHH--HHCCCeEEEEEEecch---hHHHHHHHHHHHHHHCCCcEEEE-------EE
Confidence 45678888765 3333 444443 34565543333 3433 23456677777888888874321 02
Q ss_pred eeccccHHHHHHHHHHHHHcC-CcccccCCHHHHHHHHHHHHhCCC
Q 008289 134 YRQSERNSLYKQYADKLLESG-HVYRCFCSNEELEKMKEIAKLKQL 178 (571)
Q Consensus 134 y~QSer~~~Y~~~a~~Li~~G-~AY~Cfcs~eel~~~r~~~~~~~~ 178 (571)
+.......-|...+++|.+.+ .+..++|...+....-++....|.
T Consensus 197 ~~~~~~~~d~~~~l~~l~~~~~~vvv~~~~~~~~~~~~~~a~~~g~ 242 (348)
T cd06350 197 IPPSSTEEDIKRILKKLKSSTARVIVVFGDEDDALRLFCEAYKLGM 242 (348)
T ss_pred ccCCCcHHHHHHHHHHHHhCCCcEEEEEeCcHHHHHHHHHHHHhCC
Confidence 222212356889999999999 789999888877665555555443
No 148
>PF12085 DUF3562: Protein of unknown function (DUF3562); InterPro: IPR021945 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 62 to 84 amino acids in length. This protein has two completely conserved residues (A and Y) that may be functionally important.
Probab=25.42 E-value=1.7e+02 Score=24.19 Aligned_cols=55 Identities=4% Similarity=-0.000 Sum_probs=45.6
Q ss_pred HhHHHHHHHHHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHhHHhHHhhhh
Q 008289 479 AGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVS 533 (571)
Q Consensus 479 e~i~~~ik~i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLGke~~l~Rl~ 533 (571)
++..+.|+++++++++....+-.-+-=.+.--..|..+.+.+.+|--.++.++|+
T Consensus 4 ~~~~e~i~~iA~~t~~P~e~V~~my~dt~~~l~~~ARV~DYl~lfaaRrVre~lR 58 (66)
T PF12085_consen 4 DNVDEVIRSIAEETGTPAETVRRMYDDTMRELSSGARVHDYLPLFAARRVRERLR 58 (66)
T ss_pred ccHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHh
Confidence 3456778888899998888887777777777788999999999998888888887
No 149
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=23.47 E-value=3.9e+02 Score=28.52 Aligned_cols=106 Identities=11% Similarity=0.126 Sum_probs=61.5
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCe-E--EEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCc
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGK-F--VLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDY 131 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~-f--iLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~ 131 (571)
+...|..|+.+ +.+.+...++ +++|=+ + |+.-+|.+..+.--...+.+.+.++..|+.-...
T Consensus 118 ~~~~R~~p~~~---~~~~a~~~~~-----~~~~w~~va~ii~~~~~~~~~~~~~~~~~l~~~~~~~gi~v~~~------- 182 (405)
T cd06385 118 ATITRTGPTHK---KLGEFVLHIH-----QHFGWRSHAMLIYSDNKVDDRPCYFAMEGLYMELKKNNITVVDL------- 182 (405)
T ss_pred cceEEecCchH---HHHHHHHHHH-----HhCCCeEEEEEEEecCcccccchHHHHHHHHHHHHhCCeEEEEe-------
Confidence 45679988764 4555544433 344543 2 3344444443332223567788888888764321
Q ss_pred cceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCC
Q 008289 132 GPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQ 177 (571)
Q Consensus 132 gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~ 177 (571)
.+... -..-+...+++|.+.+.++.+.|..++....-.++.+.|
T Consensus 183 -~~~~~-~~~d~~~~l~~ik~~~~iii~~~~~~~~~~i~~~a~~~g 226 (405)
T cd06385 183 -VFEED-DLINYTTLLQDIKQKGRVIYVCCSPDIFRRLMLQFWREG 226 (405)
T ss_pred -eccCC-chhhHHHHHHHHhhcceEEEEeCCHHHHHHHHHHHHHcC
Confidence 11111 134577888888888899999999887766544444433
No 150
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.40 E-value=1.7e+02 Score=34.81 Aligned_cols=106 Identities=18% Similarity=0.247 Sum_probs=58.7
Q ss_pred CCC--cEEEeeeeecCCCCcccccCCCCchHHHHHCC------CCHHHHHHHHHHhCCCCCCCcccCCH------HHHHH
Q 008289 286 SMP--YFAHVSLILAPDRSKLSKRHGATSVGQFREMG------YLPQAMVNYLALLGWGDGTENEFFTL------KQLVE 351 (571)
Q Consensus 286 ~~P--~f~H~pli~~~~g~KLSKR~g~~~v~~~r~~G------~~Peai~n~l~~lG~~~~~~~e~~s~------~eli~ 351 (571)
..| ...-++..++++|.||||.-|++.=-...-.| |=.++++-+++ |....++ -.... .|.+.
T Consensus 594 kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA--~~~~t~d-~~iGp~il~qv~e~l~ 670 (937)
T KOG0433|consen 594 KAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVA--GSENTGE-SKIGPKILDQVDEKLI 670 (937)
T ss_pred cCCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeeee--cccccCc-eecCHHHHHHHHHHHH
Confidence 355 34556788899999999999985322233334 55566666665 2221111 11111 12222
Q ss_pred ------hcCcccccc---CCCcccHHHHHHhhHHHHhcCChhHHHHHHHHHHHH
Q 008289 352 ------KFTIERVNK---SGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKS 396 (571)
Q Consensus 352 ------~F~~~~~~~---s~~~fd~~kL~wlN~~~ir~l~~~~l~~~~~~~~~~ 396 (571)
.|-+..+.. .-..|+...|..++++-|.+++ ++.+.+.+..++
T Consensus 671 K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~--~~~~~i~e~Y~~ 722 (937)
T KOG0433|consen 671 KFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLD--AIVKRIIELYND 722 (937)
T ss_pred HHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHHH--HHHHHHHHHHHh
Confidence 344444443 3356788888888888777653 455555554443
No 151
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.65 E-value=24 Score=41.09 Aligned_cols=20 Identities=40% Similarity=0.418 Sum_probs=16.7
Q ss_pred EEeeeeecCCCCcccccCCC
Q 008289 291 AHVSLILAPDRSKLSKRHGA 310 (571)
Q Consensus 291 ~H~pli~~~~g~KLSKR~g~ 310 (571)
.--++++..||+|||||..+
T Consensus 589 IvnGlVLAeDG~KMSKrlkN 608 (1070)
T KOG0434|consen 589 IVNGLVLAEDGKKMSKRLKN 608 (1070)
T ss_pred eEeeeEEecccHHHhhhhhc
Confidence 44588899999999999765
No 152
>cd00498 Hsp33 Heat shock protein 33 (Hsp33): Cytosolic protein that acts as a molecular chaperone under oxidative conditions. In normal (reducing) cytosolic conditions, four conserved Cys residues are coordinated by a Zn ion. Under oxidative stress (such as heat shock), the Cys are reversibly oxidized to disulfide bonds, which causes the chaperone activity to be turned on. Hsp33 is homodimeric in its functional form.
Probab=22.50 E-value=94 Score=32.27 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=24.6
Q ss_pred HcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcC
Q 008289 152 ESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERG 201 (571)
Q Consensus 152 ~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g 201 (571)
.+--.|.|.||+|.+... -..++.+|+.+.++++
T Consensus 225 ~~~v~f~C~CS~er~~~~----------------L~~Lg~~El~~i~~e~ 258 (275)
T cd00498 225 KQPVRFRCDCSRERVAAA----------------LLTLGKEELADMIEED 258 (275)
T ss_pred CCCcCeeCCCCHHHHHHH----------------HHhCCHHHHHHHHHcC
Confidence 445689999999987653 2357788888776653
No 153
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=21.56 E-value=1e+02 Score=23.91 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=23.8
Q ss_pred cccHHHHHHHHHHHHHcCCcccccCCHHHHHHH
Q 008289 137 SERNSLYKQYADKLLESGHVYRCFCSNEELEKM 169 (571)
Q Consensus 137 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~ 169 (571)
-+|+..|..+.++|.++|.-+ +|.++|.++
T Consensus 8 i~RL~~Y~r~L~~l~~~G~~~---vSS~~La~~ 37 (50)
T PF06971_consen 8 IRRLPLYLRYLEQLKEEGVER---VSSQELAEA 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHTT-SE---E-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCee---ECHHHHHHH
Confidence 479999999999999999988 477887654
No 154
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=21.16 E-value=1.2e+02 Score=21.11 Aligned_cols=20 Identities=15% Similarity=0.408 Sum_probs=15.0
Q ss_pred hHHHHHCCCCHHHHHHHHHH
Q 008289 313 VGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 313 v~~~r~~G~~Peai~n~l~~ 332 (571)
+.+-++.|++++-+++||..
T Consensus 9 i~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 9 IKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 45678999999999999964
No 155
>COG4720 Predicted membrane protein [Function unknown]
Probab=21.13 E-value=52 Score=32.11 Aligned_cols=26 Identities=42% Similarity=0.741 Sum_probs=21.1
Q ss_pred CCCCCcCchhhHHHHHHHHHHHHHcC
Q 008289 62 PSPTGNLHVGGARTALFNYLFARSKG 87 (571)
Q Consensus 62 PSPtG~LHiG~~rtAl~n~l~Ar~~~ 87 (571)
|-|+|++|+|.+--++...+|-...|
T Consensus 31 p~~~~~i~L~da~i~las~lfGs~~G 56 (177)
T COG4720 31 PIPNGFLTLGDAGIALASFLFGSRAG 56 (177)
T ss_pred CCCCCeeeHHHHHHHHHHHHHcchHH
Confidence 44559999999999999999876655
No 156
>PRK00114 hslO Hsp33-like chaperonin; Reviewed
Probab=20.82 E-value=1.1e+02 Score=32.24 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=22.7
Q ss_pred HcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhc
Q 008289 152 ESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELER 200 (571)
Q Consensus 152 ~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~ 200 (571)
.+--.|.|.||+|.+...= ..++.+|+++.+++
T Consensus 231 ~~~v~f~C~CS~er~~~~L----------------~~Lg~~El~~i~~e 263 (293)
T PRK00114 231 PQPVEFKCDCSRERSANAL----------------KSLGKEELQEMIAE 263 (293)
T ss_pred CccCceeCCCCHHHHHHHH----------------HhCCHHHHHHHHHc
Confidence 4556899999999876531 34667777666554
No 157
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=20.65 E-value=24 Score=36.24 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=29.1
Q ss_pred CCceEEEeecccee---eccCC-CCCCeEEEecCCccccchhhhH
Q 008289 213 GGSLKISDLIRGEV---SWNLD-TLGDFVIMRSNGQPVYNFCVTV 253 (571)
Q Consensus 213 ~~~~~~~D~v~G~i---~~~~~-~~~D~Vl~RsdG~PtY~fA~vV 253 (571)
+|.+.|.|.=+|.+ .+... -+++---.|.||+++|-|..=.
T Consensus 176 GG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~ee 220 (264)
T KOG2361|consen 176 GGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEE 220 (264)
T ss_pred CcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHH
Confidence 47888888666543 23333 5677778899999999997643
No 158
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=20.58 E-value=1.9e+02 Score=25.99 Aligned_cols=50 Identities=12% Similarity=0.280 Sum_probs=37.9
Q ss_pred HHHHHcCCCCCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHH
Q 008289 112 QDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKE 171 (571)
Q Consensus 112 ~~L~wlGl~~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~ 171 (571)
+-|+.|||++|.. ..+..|+.|.+.+-+.|.+.+.+ .+--..+.+...|.
T Consensus 16 dFf~fF~V~YDp~---------vv~V~RLHILkrF~~yL~~~~~~-~~~~e~~~~~~~R~ 65 (105)
T PF03206_consen 16 DFFDFFGVPYDPK---------VVNVNRLHILKRFGQYLRAADFA-PGLSEEEDWAAYRR 65 (105)
T ss_pred HHHHHhCCCcchh---------HHHHhhHHHHHHHHHHHHhccCC-CCCCHHHHHHHHHH
Confidence 4478899999973 68999999999999999999887 54433344555554
No 159
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=20.54 E-value=99 Score=32.65 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=29.9
Q ss_pred hhhhhHHHHHHhCCCCCCChHHHHHHHhHHhH----HhhhhhhcccCChHHHHHH--HHH
Q 008289 497 KSLFMPLRVLLTGKLHGPDMGASILLIHKAGT----HGIVSPRAEFVTLDERFKM--LRQ 550 (571)
Q Consensus 497 k~lf~pLRvALTG~~~GP~L~~imeLLGke~~----l~Rl~~~~~fv~~~~~~~~--~~~ 550 (571)
..+||.||+++-+. |.++-..|-.... -.|| ..+.|.|||+|+.- +++
T Consensus 198 tr~FQAlRI~VN~E-----l~~L~~~L~~~~~~L~~gGrl-~visfHSlEDriVK~~f~~ 251 (296)
T PRK00050 198 TRTFQALRIEVNDE-----LEELERALEAALDLLKPGGRL-AVISFHSLEDRIVKRFFRE 251 (296)
T ss_pred HHHHHHHHHHHHhh-----HHHHHHHHHHHHHHhcCCCEE-EEEecCcHHHHHHHHHHHH
Confidence 67999999999876 3444333322211 1122 24669999999853 455
No 160
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=20.10 E-value=95 Score=32.93 Aligned_cols=48 Identities=13% Similarity=0.324 Sum_probs=30.1
Q ss_pred chhhhhHHHHHHhCCCCCCChHHHHHHHhHHhHHhhhh-----hhcccCChHHHHHH--HHH
Q 008289 496 GKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVS-----PRAEFVTLDERFKM--LRQ 550 (571)
Q Consensus 496 ~k~lf~pLRvALTG~~~GP~L~~imeLLGke~~l~Rl~-----~~~~fv~~~~~~~~--~~~ 550 (571)
...+||.||+++-+. |..+-..|-. +...|+ ..+.|.|||+||.- +++
T Consensus 201 atr~FQALRI~VN~E-----L~~L~~~L~~--~~~~L~~gGrl~VISfHSLEDRiVK~~f~~ 255 (305)
T TIGR00006 201 ATRVFQAIRIYVNDE-----LEELEEALQF--APNLLAPGGRLSIISFHSLEDRIVKNFFRE 255 (305)
T ss_pred HHHHHHHHHHHHHHh-----HHHHHHHHHH--HHHHhcCCCEEEEEecCcHHHHHHHHHHHH
Confidence 367999999999875 3444333322 122222 24569999999853 555
Done!