Query 008289
Match_columns 571
No_of_seqs 281 out of 2141
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 22:40:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gri_A Glutamate--tRNA ligase; 100.0 1E-132 3E-137 1097.6 48.9 483 53-540 22-509 (512)
2 2ja2_A Glutamyl-tRNA synthetas 100.0 9E-129 3E-133 1057.9 48.1 477 53-539 4-487 (498)
3 1j09_A Glutamyl-tRNA synthetas 100.0 2E-126 5E-131 1035.5 48.7 466 55-536 1-467 (468)
4 4g6z_A Glutamate-tRNA ligase; 100.0 5E-128 2E-132 1047.0 33.6 472 46-536 16-489 (490)
5 2cfo_A Glutamyl-tRNA synthetas 100.0 3E-122 1E-126 1007.3 51.5 467 55-537 1-478 (492)
6 3afh_A Glutamyl-tRNA synthetas 100.0 9E-123 3E-127 1009.9 42.3 457 54-537 24-483 (488)
7 2o5r_A Glutamyl-tRNA synthetas 100.0 2E-118 6E-123 976.4 47.8 465 55-536 13-479 (481)
8 3al0_C Glutamyl-tRNA(Gln) amid 100.0 9E-118 3E-122 990.1 34.7 459 54-539 128-589 (592)
9 1nzj_A Hypothetical protein YA 100.0 6.1E-85 2.1E-89 673.1 21.0 280 54-363 4-288 (298)
10 1qtq_A GLNRS, protein (glutami 100.0 1.8E-80 6.3E-85 679.7 21.4 316 46-389 17-377 (553)
11 2hz7_A Glutaminyl-tRNA synthet 100.0 1.4E-76 4.7E-81 673.1 21.0 302 46-375 57-396 (851)
12 3aii_A Glutamyl-tRNA synthetas 100.0 2.6E-75 9E-80 639.0 26.5 259 46-337 88-379 (553)
13 1irx_A Lysyl-tRNA synthetase; 100.0 3.7E-61 1.3E-65 531.4 4.8 437 55-535 21-522 (523)
14 1iq0_A Arginyl-tRNA synthetase 99.9 4.2E-23 1.4E-27 230.9 15.0 254 55-375 104-467 (592)
15 1li5_A Cysrs, cysteinyl-tRNA s 99.9 1.1E-22 3.8E-27 221.2 16.2 237 60-351 26-311 (461)
16 2csx_A Methionyl-tRNA syntheta 99.9 7.3E-23 2.5E-27 224.2 12.6 270 56-352 8-342 (497)
17 2dlc_X Tyrosyl-tRNA synthetase 99.9 4.2E-22 1.4E-26 212.5 15.5 198 55-333 41-253 (394)
18 2d5b_A Methionyl-tRNA syntheta 99.8 1.4E-21 4.9E-26 213.9 11.4 260 58-351 8-343 (500)
19 3tqo_A Cysteinyl-tRNA syntheta 99.8 2.7E-20 9.1E-25 201.8 16.9 236 61-349 32-312 (462)
20 3c8z_A Cysteinyl-tRNA syntheta 99.8 3.5E-19 1.2E-23 191.3 15.9 244 59-351 44-337 (414)
21 3fnr_A Arginyl-tRNA synthetase 99.8 4.1E-19 1.4E-23 193.0 16.1 116 234-374 206-332 (464)
22 1n3l_A Tyrosyl-tRNA synthetase 99.8 4.4E-18 1.5E-22 180.2 19.1 244 54-379 36-301 (372)
23 1f7u_A Arginyl-tRNA synthetase 99.7 1.9E-17 6.3E-22 185.4 13.7 246 53-375 142-483 (607)
24 3sp1_A Cysteinyl-tRNA syntheta 99.7 3.7E-17 1.3E-21 178.3 14.8 237 62-350 50-344 (501)
25 2cyb_A Tyrosyl-tRNA synthetase 99.7 3.7E-17 1.3E-21 170.2 13.8 217 55-353 34-258 (323)
26 3h99_A Methionyl-tRNA syntheta 99.7 2.3E-16 7.9E-21 175.2 13.0 275 56-352 21-393 (560)
27 4dlp_A Aminoacyl-tRNA syntheta 99.7 8.3E-17 2.8E-21 177.9 8.6 269 56-353 28-369 (536)
28 2x1l_A Methionyl-tRNA syntheta 99.6 4.2E-15 1.5E-19 163.6 11.5 259 58-352 17-357 (524)
29 2zue_A Arginyl-tRNA synthetase 99.6 1E-14 3.6E-19 164.0 12.9 258 53-375 118-501 (629)
30 3kfl_A Methionyl-tRNA syntheta 99.5 8.9E-15 3E-19 162.8 6.1 267 55-353 28-387 (564)
31 2g36_A Tryptophanyl-tRNA synth 99.3 9.6E-11 3.3E-15 122.6 17.7 202 55-333 12-230 (340)
32 2cya_A Tyrosyl-tRNA synthetase 99.2 5.8E-11 2E-15 125.4 13.2 222 55-356 37-286 (364)
33 2zp1_A Tyrosyl-tRNA synthetase 99.2 8E-10 2.7E-14 114.5 17.7 211 55-354 30-249 (314)
34 1rqg_A Methionyl-tRNA syntheta 99.1 7E-11 2.4E-15 135.0 10.6 275 58-351 7-390 (722)
35 2el7_A Tryptophanyl-tRNA synth 99.1 1.1E-09 3.7E-14 114.5 16.8 190 64-332 10-219 (337)
36 3u1f_A Methionyl-tRNA syntheta 99.1 9.9E-11 3.4E-15 129.2 8.5 93 57-158 13-125 (542)
37 1yi8_B Tryptophanyl-tRNA synth 99.0 1.3E-09 4.6E-14 114.4 14.1 200 54-332 23-239 (351)
38 2yy5_A Tryptophanyl-tRNA synth 99.0 2.1E-10 7.3E-15 120.4 6.1 201 56-332 7-229 (348)
39 1i6k_A TRPRS, tryptophanyl-tRN 99.0 1.7E-09 5.9E-14 112.6 12.4 189 64-332 10-219 (328)
40 3tzl_A Tryptophanyl-tRNA synth 98.5 7.8E-07 2.7E-11 92.3 14.9 190 63-332 11-216 (322)
41 1h3f_A Tyrosyl-tRNA synthetase 98.2 9.7E-06 3.3E-10 87.3 12.6 84 243-332 171-256 (432)
42 2ip1_A Tryptophanyl-tRNA synth 98.0 5E-05 1.7E-09 81.7 15.1 72 258-335 248-323 (432)
43 1r6t_A Tryptophanyl-tRNA synth 97.9 9.2E-05 3.2E-09 80.6 13.8 72 259-336 303-378 (477)
44 2cyc_A Tyrosyl-tRNA synthetase 97.9 7.5E-05 2.6E-09 79.0 12.5 221 55-355 35-298 (375)
45 3jxe_A Tryptophanyl-tRNA synth 97.9 2.7E-05 9.1E-10 82.8 8.8 189 56-332 76-278 (392)
46 3hzr_A Tryptophanyl-tRNA synth 97.8 0.00011 3.9E-09 77.8 13.2 78 255-338 218-300 (386)
47 3hv0_A Tryptophanyl-tRNA synth 97.8 0.00017 5.8E-09 76.7 14.3 72 259-336 219-295 (393)
48 2v0c_A Aminoacyl-tRNA syntheta 97.8 2.7E-05 9.3E-10 90.7 8.1 94 56-158 36-151 (878)
49 1wkb_A Leucyl-tRNA synthetase; 97.8 2.9E-05 1E-09 89.7 8.2 97 55-158 36-178 (810)
50 4arc_A Leucine--tRNA ligase; l 97.7 9.1E-05 3.1E-09 86.2 9.8 93 57-158 57-171 (880)
51 2jan_A Tyrosyl-tRNA synthetase 97.6 0.00019 6.5E-09 77.2 10.9 86 244-332 168-259 (432)
52 2j5b_A Tyrosyl-tRNA synthetase 97.6 0.00066 2.3E-08 71.1 14.1 200 56-333 43-258 (348)
53 3tze_A Tryptophanyl-tRNA synth 97.6 0.00043 1.5E-08 73.8 12.8 73 259-337 243-319 (406)
54 1ile_A Ilers, isoleucyl-tRNA s 97.6 2.5E-05 8.5E-10 90.5 3.1 100 59-167 44-194 (821)
55 1r6u_A Tryptophanyl-tRNA synth 97.5 0.00041 1.4E-08 74.7 11.8 67 260-332 257-327 (437)
56 3vgj_A Tyrosyl-tRNA synthetase 97.5 0.0021 7.1E-08 67.9 16.6 85 243-333 184-273 (373)
57 3a04_A Tryptophanyl-tRNA synth 97.5 0.0027 9.1E-08 67.1 17.0 195 56-332 73-281 (372)
58 2yxn_A Tyrosyl-tRNA synthetase 97.4 0.0002 6.8E-09 74.2 7.7 86 243-331 171-261 (322)
59 1ffy_A Isoleucyl-tRNA syntheta 97.4 0.00015 5.2E-09 84.9 7.3 94 56-158 51-178 (917)
60 1gax_A Valrs, valyl-tRNA synth 97.4 0.00026 8.7E-09 82.4 8.4 96 56-158 37-168 (862)
61 3foc_A Tryptophanyl-tRNA synth 97.4 0.0015 5E-08 70.6 13.5 69 262-336 290-362 (451)
62 3i05_A Tryptophanyl-tRNA synth 97.3 0.00011 3.7E-09 78.3 4.1 67 260-332 225-294 (395)
63 3prh_A Tryptophanyl-tRNA synth 97.3 0.00034 1.2E-08 74.2 7.7 190 63-332 43-253 (388)
64 2ts1_A Tyrosyl-tRNA synthetase 97.2 0.00055 1.9E-08 73.4 8.1 86 244-332 166-257 (419)
65 1wz2_A Leucyl-tRNA synthetase; 97.2 0.00022 7.4E-09 84.0 5.1 88 258-349 602-694 (967)
66 1jil_A Tyrrs, tyrosyl-tRNA syn 97.1 0.001 3.4E-08 71.4 9.1 86 244-332 167-258 (420)
67 2pid_A Tyrosyl-tRNA synthetase 96.9 0.00056 1.9E-08 71.8 4.6 86 243-331 190-280 (356)
68 3p0j_A Tyrosyl-tRNA synthetase 96.9 0.0051 1.7E-07 69.8 12.5 85 243-333 167-256 (690)
69 1y42_X Tyrosyl-tRNA synthetase 96.9 0.002 6.9E-08 68.4 8.7 87 243-332 212-320 (392)
70 3n9i_A Tryptophanyl-tRNA synth 96.8 0.0022 7.4E-08 67.1 7.8 195 56-332 18-234 (346)
71 3sz3_A Tryptophanyl-tRNA synth 96.8 0.0012 4E-08 69.0 5.8 191 63-332 14-228 (341)
72 1ffy_A Isoleucyl-tRNA syntheta 94.0 0.085 2.9E-06 61.8 8.0 88 258-350 547-639 (917)
73 1ile_A Ilers, isoleucyl-tRNA s 93.9 0.11 3.7E-06 60.1 8.7 91 258-351 543-637 (821)
74 1wkb_A Leucyl-tRNA synthetase; 90.0 0.62 2.1E-05 53.7 8.5 75 258-334 602-681 (810)
75 1wz2_A Leucyl-tRNA synthetase; 89.8 0.88 3E-05 53.5 9.8 94 56-158 37-178 (967)
76 1gax_A Valrs, valyl-tRNA synth 89.7 0.86 3E-05 53.0 9.5 90 258-350 480-573 (862)
77 4arc_A Leucine--tRNA ligase; l 82.0 2 6.7E-05 50.1 7.2 91 255-349 539-683 (880)
78 3p0j_A Tyrosyl-tRNA synthetase 79.8 5.2 0.00018 45.3 9.4 81 50-139 377-468 (690)
79 2v0c_A Aminoacyl-tRNA syntheta 76.6 5 0.00017 46.6 8.3 46 302-350 636-682 (878)
No 1
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=100.00 E-value=1e-132 Score=1097.64 Aligned_cols=483 Identities=36% Similarity=0.627 Sum_probs=439.4
Q ss_pred CCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCcc
Q 008289 53 DGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYG 132 (571)
Q Consensus 53 ~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~g 132 (571)
.++|||||||||||+||||||||||+||+|||++||+|||||||||++|++++|+++|+++|+||||+|||||.+||+||
T Consensus 22 ~~~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~ 101 (512)
T 4gri_A 22 MLSTRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGISFDEGPVVGGDYA 101 (512)
T ss_dssp --CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTC
T ss_pred CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCCHHHHHHHHHHHHHcCCCCCcCCccCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCC
Q 008289 133 PYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPK 212 (571)
Q Consensus 133 py~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~ 212 (571)
||+||+|+++|++++++|+++|+||+||||++|+++.|+.+...+.++.|++.|++++.++..+...+|.++++|||+|.
T Consensus 102 py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~ 181 (512)
T 4gri_A 102 PYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKIPL 181 (512)
T ss_dssp CCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCS
T ss_pred CccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999998
Q ss_pred CCceEEEeeccceeeccCC-CCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEE
Q 008289 213 GGSLKISDLIRGEVSWNLD-TLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFA 291 (571)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~-~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~ 291 (571)
++.+.|.|.++|++.+.+. ..+||||+|+||+||||||||||||+|||||||||+||++|||+|++||++|||++|.|+
T Consensus 182 ~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg~~~P~y~ 261 (512)
T 4gri_A 182 EGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFKWKPPIYC 261 (512)
T ss_dssp SCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEE
T ss_pred cCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcCCCCCeEE
Confidence 8999999999999998876 457999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHH
Q 008289 292 HVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLR 371 (571)
Q Consensus 292 H~pli~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~ 371 (571)
|+|+|++.+|+|||||+|+.+|.+||++||+||||+|||++||||+++++|+||++||++.|++++++++|++||++||.
T Consensus 262 H~pli~~~~g~kLSKR~~~~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eifs~~eli~~Fdl~~v~ks~a~fD~~KL~ 341 (512)
T 4gri_A 262 HLPMVMGNDGQKLSKRHGSTALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKNDLEQFFSIEKINKSPAIFDYHKLD 341 (512)
T ss_dssp EECCCBCTTSSBCCTTTSCCBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCCCHHHHHHHCCGGGBCSSCCBCCHHHHH
T ss_pred ecchhccccccccCcccccccHHHHHHcCCChHHHHHHHHHhCCCCcccchhhhHHHHHHHHHhcCCCCCCccccHHHHH
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred HhhHHHHhcCChhHHHHHHHHHHHHcCCCCC----CCchhHHHHHHHHhccccchhhHHHHHHhhhcCCcccCCCchhch
Q 008289 372 WMNGQHLRAIPSNELTKLIGERWKSTGILTE----SKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGK 447 (571)
Q Consensus 372 wlN~~~ir~l~~~~l~~~~~~~~~~~~~~~~----~~~~~l~~~~~l~k~r~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 447 (571)
|||++||++++.+++.+++.+++.+.|+... .+.+++.+++.++++|++++.|+.+++.+||..+...+.+....+
T Consensus 342 ~~N~~~i~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~l~k~r~~~l~di~~~~~~ff~~~~~~~~de~~~~ 421 (512)
T 4gri_A 342 FFNSYYIREKKDEDLFNLLLPFFQKKGYVSKPSTLEENQKLKLLIPLIKSRIKKLSDALNMTKFFYEDIKSWNLDEFLSR 421 (512)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHHHHHTTCSSTTHHHHHTHHHHSCCCCCCGGGC---
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHcCCcccccchhhHHHHHHHHHHHHhhcccHHHHHHHHHHHhcCCCccCccHHHHH
Confidence 9999999999999999999999998887532 134688999999999999999999999988875432221221223
Q ss_pred hhccccHHHHHHHHHHHHcCCchhhhhhhchHhHHHHHHHHHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHhHHh
Q 008289 448 SIVEDNLSEVAAHLLAAYDGGELLAALEEGHAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAG 527 (571)
Q Consensus 448 ~~~~~~~~evl~~lL~~L~~~~~~~~~~~~~e~i~~~ik~i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLGke~ 527 (571)
+...+...+++..+.+.++..+ +++.++++++++++++++|+|+|++|||||+||||+.+||+|+++|++||||+
T Consensus 422 k~~~~~~~~~L~~~~~~L~~~~-----~~~~e~i~~~i~~~~~~~g~K~k~l~~pLR~ALTG~~~GP~L~~i~~lLGkee 496 (512)
T 4gri_A 422 KKTAKEVCSILELIKPILEGFE-----KRSSEENDKIFYDFAESNGFKLGEILLPIRIAALGSKVSPPLFDSLKLIGKSK 496 (512)
T ss_dssp ----CHHHHHHHHHHHHHTTGG-----GSCHHHHHHHHHHHHHHC---CHHHHHHHHHHHSSSSSCSCHHHHHHHHCHHH
T ss_pred HhhHHHHHHHHHHHHHHHHcCC-----cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcCcCHHHHHHHhCHHH
Confidence 3333444556666666665432 35788999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhcccCC
Q 008289 528 THGIVSPRAEFVT 540 (571)
Q Consensus 528 ~l~Rl~~~~~fv~ 540 (571)
|++||+.|++++.
T Consensus 497 vl~RL~~Al~~lk 509 (512)
T 4gri_A 497 VFERIKLAQEFLR 509 (512)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987754
No 2
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=100.00 E-value=8.7e-129 Score=1057.86 Aligned_cols=477 Identities=34% Similarity=0.554 Sum_probs=441.5
Q ss_pred CCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCcc
Q 008289 53 DGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYG 132 (571)
Q Consensus 53 ~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~g 132 (571)
.++|||||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|+++|+||||+|||||++||+||
T Consensus 4 ~~~vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~ 83 (498)
T 2ja2_A 4 TETVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYG 83 (498)
T ss_dssp CCCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTC
T ss_pred CCCeeEEECcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCCC
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCC
Q 008289 133 PYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPK 212 (571)
Q Consensus 133 py~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~ 212 (571)
||+||+|+++|++++++|+++|+||+||||++||+++| .+...+.++.|+|+||+++.+|+.++..+|.+++||||+|
T Consensus 84 ~~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r-~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~- 161 (498)
T 2ja2_A 84 PYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARH-VAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMP- 161 (498)
T ss_dssp CCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHH-HHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCC-
T ss_pred CeeeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHH-HHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECC-
Confidence 99999999999999999999999999999999999999 7767777889999999999999988889999999999999
Q ss_pred CCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHh-----CCCC
Q 008289 213 GGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKAL-----GFSM 287 (571)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~al-----g~~~ 287 (571)
++.+.|+|+|+|++.+++..++||||+|+||+||||||||||||+|||||||||+||++|||+|++||++| ||+.
T Consensus 162 ~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~~g~g~~~ 241 (498)
T 2ja2_A 162 DDDLAWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERI 241 (498)
T ss_dssp SSCEEEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHHTTSCCCC
T ss_pred CCceEEEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHhhcCCCCC
Confidence 68999999999999999989999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcEEEeeeeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccH
Q 008289 288 PYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDS 367 (571)
Q Consensus 288 P~f~H~pli~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~ 367 (571)
|.|+|+|+|+|.+|+|||||+|+.+|.+||++||+|+||+|||++|||+++++.|+||++|++++|+++++++++++||+
T Consensus 242 P~~~h~plil~~~g~KLSKR~g~~~l~~~r~~G~~peAl~~~l~~lG~s~~~~~e~~s~~eli~~f~~~~~~~~~a~fd~ 321 (498)
T 2ja2_A 242 PKFAHLPTVLGEGTKKLSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDEMVAAFDVADVNSSPARFDQ 321 (498)
T ss_dssp CEEEEECCEECSSSSBCCTTSGGGBHHHHHHHTCCHHHHHHHHHTSSCCSCSSCCCCCHHHHHHHCCGGGCCCSCEECCH
T ss_pred CeEEEeeeeECCCCCcccccCCcccHHHHHhCCCCHHHHHHHHHHhCCCCCcccccCCHHHHHhhCChhhcCccccccCH
Confidence 99999999999999999999999999999999999999999999999998877899999999999999999999999999
Q ss_pred HHHHHhhHHHHhcCChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHhccccchhhHHHHHHhhhcCCcccCC-Cchhc
Q 008289 368 TKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTL-TSSEG 446 (571)
Q Consensus 368 ~kL~wlN~~~ir~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~l~k~r~~~l~d~~~~~~~~~~~~~~~~~-~~~~~ 446 (571)
+||.|||++||++++.+++.+++.+++.+.|+....+.+++.+++.++++|++++.|+.+++.+|| .+. .+ +.+..
T Consensus 322 ~kL~~~N~~~i~~~~~~~l~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~r~~~l~e~~~~~~~~f-~~~--~~~~~~~~ 398 (498)
T 2ja2_A 322 KKADALNAEHIRMLDVGDFTVRLRDHLDTHGHHIALDEAAFAAAAELVQTRIVVLGDAWELLKFFN-DDQ--YVIDPKAA 398 (498)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHTTSCSSTTHHHHHHGGGS-TTT--CCCCHHHH
T ss_pred HHHHHhhHHHHHhcCHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHhc-CCc--ccccHHHH
Confidence 999999999999999999999999999887753223457899999999999999999999998877 322 23 22334
Q ss_pred hhhccccHHHHHHHHHHHHcCCchhhhhhhchHhHHHHHHH-HHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHhH
Q 008289 447 KSIVEDNLSEVAAHLLAAYDGGELLAALEEGHAGWQKWVKG-FGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHK 525 (571)
Q Consensus 447 ~~~~~~~~~evl~~lL~~L~~~~~~~~~~~~~e~i~~~ik~-i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLGk 525 (571)
++.+++...+++..+++.|+..+ +|+.++|++++++ +++++|+|+|++|||||+||||+.+||+|+++|++|||
T Consensus 399 ~k~l~~~~~~~L~~~~~~L~~~~-----~~~~e~i~~~i~~~v~~~~g~k~k~lf~pLR~ALtG~~~GP~L~~~~~lLGk 473 (498)
T 2ja2_A 399 AKELGPDGAAVLDAALAALTSVT-----DWTAPLIEAALKDALIEGLALKPRKAFSPIRVAATGTTVSPPLFESLELLGR 473 (498)
T ss_dssp HHHSSHHHHHHHHHHHHHHHTCS-----SCCHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHSSSSCSCHHHHHHHHCH
T ss_pred HHhccHHHHHHHHHHHHHHhccc-----cCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhCH
Confidence 44555445567777777776532 3678999999999 99999999999999999999999999999999999999
Q ss_pred HhHHhhhhhhcccC
Q 008289 526 AGTHGIVSPRAEFV 539 (571)
Q Consensus 526 e~~l~Rl~~~~~fv 539 (571)
+++++||+.+++.+
T Consensus 474 e~~l~RL~~al~~~ 487 (498)
T 2ja2_A 474 DRSMQRLRAARQLV 487 (498)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987743
No 3
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=100.00 E-value=1.6e-126 Score=1035.45 Aligned_cols=466 Identities=36% Similarity=0.632 Sum_probs=432.4
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccce
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy 134 (571)
+|||||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|+++|+||||+|||+|++||+||||
T Consensus 1 ~v~~RFaPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~ 80 (468)
T 1j09_A 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPY 80 (468)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCe
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCC
Q 008289 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGG 214 (571)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~ 214 (571)
+||+|+++|++++++|+++|+||+||||++||+++|+.+. .|+|+||+++.+|+.+++.+|.++++|||+|.++
T Consensus 81 ~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~------~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~ 154 (468)
T 1j09_A 81 RQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG------GYDGRARNIPPEEAEERARRGEPHVIRLKVPRPG 154 (468)
T ss_dssp BGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHS------SCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSC
T ss_pred eccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcC------CCCCcccCCCHHHHHHHHhcCCCceEEEecCCCC
Confidence 9999999999999999999999999999999999987642 7999999999999999999999999999999888
Q ss_pred ceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEee
Q 008289 215 SLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVS 294 (571)
Q Consensus 215 ~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~p 294 (571)
.+.|+|+++|++.+++..++||||+|+||+||||||||||||+|||||||||+||++|||+|+++|++|||+.|.|+|+|
T Consensus 155 ~~~~~D~~~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~~h~~ 234 (468)
T 1j09_A 155 TTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMP 234 (468)
T ss_dssp EEEEEETTTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEEC
T ss_pred ceEEEeccceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeEEEee
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHhh
Q 008289 295 LILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMN 374 (571)
Q Consensus 295 li~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wlN 374 (571)
+|+|.+|+|||||+|+.+|.+|+++||+|+||+|||++|||+++++.+++|+++++++|+++++++++++||++||.|+|
T Consensus 235 li~~~~g~klSKR~g~~~l~~~~~~G~~peal~~~l~~lG~~~~~~~~~~~~~el~~~f~~~~~~~~~~~~d~~kl~~~N 314 (468)
T 1j09_A 235 LLRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTWERVSLGGPVFDLEKLRWMN 314 (468)
T ss_dssp CCBCTTSCBCCTTTSCCBHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHHHHHCCGGGCCCSCCBCCHHHHHHHH
T ss_pred eeeCCCCCccccccchhhHHHHHHCCCCHHHHHHHHHHhccCCcccccCCCHHHHHhhCChhhcCccccccChHHhhhhc
Confidence 99999999999999999999999999999999999999999987777999999999999999999999999999999999
Q ss_pred HHHHhc-CChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHhccccchhhHHHHHHhhhcCCcccCCCchhchhhcccc
Q 008289 375 GQHLRA-IPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVEDN 453 (571)
Q Consensus 375 ~~~ir~-l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~l~k~r~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (571)
++||+. ++.+++.+++.+++.+.|+. ..+.+++.+++.++++|++++.|+.+++.+||..+. .++....++.+ +.
T Consensus 315 ~~~i~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~l~e~~~~~~~~f~~~~--~~~~~~~~k~~-~~ 390 (468)
T 1j09_A 315 GKYIREVLSLEEVAERVKPFLREAGLS-WESEAYLRRAVELMRPRFDTLKEFPEKARYLFTEDY--PVSEKAQRKLE-EG 390 (468)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTTCC-CSCHHHHHHHHHHHGGGCSSTTHHHHHSGGGTCSCC--CCCHHHHHHHH-HH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCC-cccHHHHHHHHHHHhccCCcHHHHHHHHHHHhcCCC--ccCHHHHHhcc-cH
Confidence 999999 99999999999999988752 224578999999999999999999999988876432 23323333444 33
Q ss_pred HHHHHHHHHHHHcCCchhhhhhhchHhHHHHHHHHHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHhHHhHHhhhh
Q 008289 454 LSEVAAHLLAAYDGGELLAALEEGHAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVS 533 (571)
Q Consensus 454 ~~evl~~lL~~L~~~~~~~~~~~~~e~i~~~ik~i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLGke~~l~Rl~ 533 (571)
.+++..+++.|+..+ +|+.++|+++++++++++|+|+|++|||||+||||+.+||+|+++|++|||+++++||+
T Consensus 391 -~~~L~~~~~~L~~~~-----~w~~e~i~~~ik~v~~~~g~K~k~lf~PLR~ALTG~~~GP~L~~im~lLGkeetl~RL~ 464 (468)
T 1j09_A 391 -LPLLKELYPRLRAQE-----EWTEAALEALLRGFAAEKGVKLGQVAQPLRAALTGSLETPGLFEILALLGKERALRRLE 464 (468)
T ss_dssp -HHHHHHHHHHHHHCC-----CCSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSCSCCSCHHHHHHHTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHhccc-----cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHhCHHHHHHHHH
Confidence 566666766665421 36789999999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q 008289 534 PRA 536 (571)
Q Consensus 534 ~~~ 536 (571)
.++
T Consensus 465 ~al 467 (468)
T 1j09_A 465 RAL 467 (468)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 4
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=100.00 E-value=5.3e-128 Score=1047.04 Aligned_cols=472 Identities=37% Similarity=0.622 Sum_probs=359.2
Q ss_pred cCCCCCCCCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCC
Q 008289 46 STNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGP 125 (571)
Q Consensus 46 ~~~~~~~~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp 125 (571)
-..|++..++|||||||||||+|||||+||||+||++||++||+|||||||||++|++++|+++|+++|+||||+||++
T Consensus 16 ~~~p~~~~~~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~~d~~- 94 (490)
T 4g6z_A 16 TQGPGSMTRPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDEG- 94 (490)
T ss_dssp --------CCCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSEE-
T ss_pred cccccccCCCceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCcccccHHHHHHHHHHHHHcCCCCCCC-
Confidence 3455666678999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCce
Q 008289 126 GVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYT 205 (571)
Q Consensus 126 ~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~ 205 (571)
||+||+|+++|++++++|+++|+||+||||++||+++|+.+...|.++.|+|+||++++++. +...+|.+++
T Consensus 95 -------~~~qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~-~~~~~g~~~~ 166 (490)
T 4g6z_A 95 -------PYYQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVL-PEPPAGVAPV 166 (490)
T ss_dssp -------EEEGGGCHHHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCC-CCCCTTCCCE
T ss_pred -------CcccccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhh-hhhhcCCCce
Confidence 79999999999999999999999999999999999999888777888999999999985432 2345689999
Q ss_pred EEEecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCC
Q 008289 206 YRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGF 285 (571)
Q Consensus 206 iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~ 285 (571)
+|||+|.++.++|+|+|+|++.+++..++||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||
T Consensus 167 ~R~k~~~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG~ 246 (490)
T 4g6z_A 167 LRFRNPLTGTVAWDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGG 246 (490)
T ss_dssp EEECCCCSSEEEEEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTTC
T ss_pred EEEecCCCCcEEEEEeeeeeeeeccccCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcCC
Confidence 99999988999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEeeeeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcc
Q 008289 286 SMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIF 365 (571)
Q Consensus 286 ~~P~f~H~pli~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~f 365 (571)
++|.|+|+|+|++.+|+|||||+|+++|.+||++||+|+||+|||++|||+++ +.|+||++||+++|++++++++|++|
T Consensus 247 ~~P~f~HlpLi~~~~g~KLSKR~g~~sl~~~r~~G~~peal~n~l~~lG~s~~-~~e~~s~~eli~~F~~~~~~~~~~~f 325 (490)
T 4g6z_A 247 EVPVYAHLPTVLNEQGEKMSKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSHG-DAEIFTREQFVEWFDLEHLGKSPAQY 325 (490)
T ss_dssp CCCEEEEECCEECTTSSBCCTTTTCCBHHHHHHTTCCHHHHHHHHHTSSBCCT-TCCCCCHHHHHHHCCGGGBCSSCEEC
T ss_pred CCCeEEEecceeCCCCCcccCCCCCcCHHHHHHCCCCHHHHHHHHHHhCCCCC-CccccCHHHHHhhCCHhhCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999975 56999999999999999999999999
Q ss_pred cHHHHHHhhHHHHhcCChhHHHHHHHHHHHHcCCCCC--CCchhHHHHHHHHhccccchhhHHHHHHhhhcCCcccCCCc
Q 008289 366 DSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTE--SKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTS 443 (571)
Q Consensus 366 d~~kL~wlN~~~ir~l~~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~k~r~~~l~d~~~~~~~~~~~~~~~~~~~ 443 (571)
|++||.|||++||++++.+++.+++.+++++.|+... .+.+++.+++.++++|++++.|+.+++.+||..+.. +.
T Consensus 326 d~~KL~~~N~~~i~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~e~~~~~~~~f~~~~~---~~ 402 (490)
T 4g6z_A 326 DHNKLNWLNNHYIKEADDARLAGLAKPFFAALGIDAGAIEQGPDLVSVMGLMKDRASTVKEIAENSAMFYRAPAP---GA 402 (490)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTCCHHHHHHSSCHHHHHHHHCTTCSSHHHHHHHHGGGTSCCC------
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCccccccHHHHHHHHHHHHHhcCcHHHHHHHHHHHcCCCCC---CH
Confidence 9999999999999999999999999999998876321 223689999999999999999999999988865432 22
Q ss_pred hhchhhccccHHHHHHHHHHHHcCCchhhhhhhchHhHHHHHHHHHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHH
Q 008289 444 SEGKSIVEDNLSEVAAHLLAAYDGGELLAALEEGHAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLI 523 (571)
Q Consensus 444 ~~~~~~~~~~~~evl~~lL~~L~~~~~~~~~~~~~e~i~~~ik~i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLL 523 (571)
+..++.+.+...+++..+++.|+.. +|+.++|+++++++++++|+|+|++|||||+||||+.+||+|+++|++|
T Consensus 403 ~~~~~~~~~~~~~iL~~~~~~L~~~------~~~~e~i~~~ik~~~~~~glK~k~lf~PLRvALTG~~~GP~L~eil~LL 476 (490)
T 4g6z_A 403 DALAQHVTDAVRPALVEFAAALKTV------EWTKEAIAAALKAVLGAHKLKMPQLAMPVRLLVAGTTHTPSIDAVLLLF 476 (490)
T ss_dssp --------------------------------------------------------------------CCSCHHHHHHHS
T ss_pred HHHHhhcCHHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHh
Confidence 2233334434445556565555432 2677899999999999999999999999999999999999999999999
Q ss_pred hHHhHHhhhhhhc
Q 008289 524 HKAGTHGIVSPRA 536 (571)
Q Consensus 524 Gke~~l~Rl~~~~ 536 (571)
|||+|++||+.++
T Consensus 477 GKeetL~RL~~al 489 (490)
T 4g6z_A 477 GRDVVVSRIEAAL 489 (490)
T ss_dssp CHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999875
No 5
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=100.00 E-value=3e-122 Score=1007.31 Aligned_cols=467 Identities=40% Similarity=0.677 Sum_probs=432.6
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccce
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy 134 (571)
+|||||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|+++|+||||+|||+ ||
T Consensus 1 ~v~~RFAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dL~wLGl~wde~--------~~ 72 (492)
T 2cfo_A 1 TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDEG--------PY 72 (492)
T ss_dssp CCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSEE--------EE
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCccccchHHHHHHHHHHHHcCCCCCCC--------Cc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999995 79
Q ss_pred eccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCC
Q 008289 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGG 214 (571)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~ 214 (571)
+||+|+++|++++++|+++|+||+||||++||+++|+.+...|.++.|+|+||+++.+|..+++.+|.++++|||+|.++
T Consensus 73 ~QS~r~~~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 152 (492)
T 2cfo_A 73 FQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDR 152 (492)
T ss_dssp EGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTC
T ss_pred cccCCHHHHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCC
Confidence 99999999999999999999999999999999999998888888889999999999999988899999999999999878
Q ss_pred ceEEEeeccceeeccCCCC-CCeEEEecC-----CccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCC
Q 008289 215 SLKISDLIRGEVSWNLDTL-GDFVIMRSN-----GQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMP 288 (571)
Q Consensus 215 ~~~~~D~v~G~i~~~~~~~-~D~Vl~Rsd-----G~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P 288 (571)
.+.|+|+|+|++.+++..+ +||||+|+| |+||||||||||||+|||||||||+||++|||+|++||++|||+.|
T Consensus 153 ~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg~~~P 232 (492)
T 2cfo_A 153 QIEWQDLVRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPP 232 (492)
T ss_dssp EEEEEETTTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCCCC
T ss_pred ceEEEecceeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCCCCc
Confidence 9999999999999998888 999999999 9999999999999999999999999999999999999999999999
Q ss_pred cEEEeeeeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCC-CCCcccCCHHHHHHhcCccccccCCCcccH
Q 008289 289 YFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGD-GTENEFFTLKQLVEKFTIERVNKSGAIFDS 367 (571)
Q Consensus 289 ~f~H~pli~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~-~~~~e~~s~~eli~~F~~~~~~~s~~~fd~ 367 (571)
.|+|+|+|+|.+|+|||||+|+.+|.+|+++||+|+||+|||++|||++ ++..|+||++++++.|+++++++++++||+
T Consensus 233 ~~~H~plil~~~g~KLSKr~g~~~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e~~~~~e~i~~f~~~~i~~~~~~~d~ 312 (492)
T 2cfo_A 233 NFAHTPLILNSTGQKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFTLDLAAKHFSFERINKAGARFDW 312 (492)
T ss_dssp EEEEECCEECSSSSBCCTTSSCCBHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCCHHHHHHHCCSTTBCSSCEECCH
T ss_pred eEEEeeeEECCCCCEecccCCcccHHHHHHCCCCHHHHHHHHHHhCCCCCCccccccCHHHHHhhcChhhcCccccccCH
Confidence 9999999999999999999999999999999999999999999999997 566799999999999999999999999999
Q ss_pred HHHHHhhHHHHhcCChhHHHHHHHHHHHHcCCC-CC-CCchhHHHHHHHHhccccchhhHHHHHHhhhcCCcccCCCchh
Q 008289 368 TKLRWMNGQHLRAIPSNELTKLIGERWKSTGIL-TE-SKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSE 445 (571)
Q Consensus 368 ~kL~wlN~~~ir~l~~~~l~~~~~~~~~~~~~~-~~-~~~~~l~~~~~l~k~r~~~l~d~~~~~~~~~~~~~~~~~~~~~ 445 (571)
+||.|||++||++++.+++++++.+++.+.|.+ .. .+.+++.+++.++++|++++.|+.+++.+||..+. .++ +.
T Consensus 313 ~kl~~~N~~~i~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~l~~~~~~~~~r~~~l~e~~~~~~~~f~~~~--~~~-~~ 389 (492)
T 2cfo_A 313 DKLNWLNRQYIQQLEPEEFLAELIPLWQGAGYAFDEERDRPWLFDLAQLLQPGLNTLREAIDQGAVFFIPSV--TFD-SE 389 (492)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTCCCCTTTTHHHHHHHHHHHGGGCSSGGGHHHHHHHHHSSSC--CCC-HH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcCcccccHHHHHHHHHHHhccCCcHHHHHHHHHHHhcCCC--Chh-HH
Confidence 999999999999999999999999999888743 21 23468999999999999999999999998886432 233 33
Q ss_pred chhhccc-cHHHHHHHHHHHHcCCchhhhhhhchHhHHHHHHHHHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHh
Q 008289 446 GKSIVED-NLSEVAAHLLAAYDGGELLAALEEGHAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIH 524 (571)
Q Consensus 446 ~~~~~~~-~~~evl~~lL~~L~~~~~~~~~~~~~e~i~~~ik~i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLG 524 (571)
..+.+.. ...+++..+++.|+..+ +|+.++|+++++++++++|+|+|++|||||+||||+.+||+|+++|++||
T Consensus 390 ~~k~l~~~~~~~~L~~~~~~L~~~~-----~~~~e~i~~~i~~~~~~~g~k~~~lf~pLR~aLtG~~~GP~l~~~~~lLG 464 (492)
T 2cfo_A 390 AMAQLGQPQSATILAYLLEHLPAEP-----ALTVAMGQQLIQQAAKAAGVKKGATMRTLRAALTGAVHGPDLMAAWQILH 464 (492)
T ss_dssp HHHHHTSTTHHHHHHHHHHHCCSSS-----CCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHSSSSCSCHHHHHHHHH
T ss_pred HHHhcCchhHHHHHHHHHHHHhccc-----cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhC
Confidence 3444443 45667777777776531 36789999999999999999999999999999999999999999999999
Q ss_pred HHh-HHhhhhhhcc
Q 008289 525 KAG-THGIVSPRAE 537 (571)
Q Consensus 525 ke~-~l~Rl~~~~~ 537 (571)
|++ +++||+.+++
T Consensus 465 ke~~~l~Rl~~al~ 478 (492)
T 2cfo_A 465 QRGWDEPRLAAALK 478 (492)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 999 9999998754
No 6
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=100.00 E-value=8.9e-123 Score=1009.89 Aligned_cols=457 Identities=40% Similarity=0.692 Sum_probs=420.0
Q ss_pred CceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccc
Q 008289 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133 (571)
Q Consensus 54 ~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gp 133 (571)
++|||||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|+++|+||||+|||+|++||+|||
T Consensus 24 ~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~~gp 103 (488)
T 3afh_A 24 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP 103 (488)
T ss_dssp -CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CCceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCcccccHHHHHHHHHHHHHcCCCCCcCCCCCCCCCC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCC
Q 008289 134 YRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKG 213 (571)
Q Consensus 134 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~ 213 (571)
|+||+|.++|++++++|+++|+||+||||++||+++ .++.|+|+| +++++|.++++|||+| +
T Consensus 104 ~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~--------~~~~Y~~~~---------~~~~~G~~~~iR~k~~-~ 165 (488)
T 3afh_A 104 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKE--------LFTTYEYPH---------EYKEKGHPVTIKFKVL-P 165 (488)
T ss_dssp CBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSE--------EEEESSCCH---------HHHHTTCCEEEEECCC-S
T ss_pred eeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhh--------cCCCCCchh---------hHHhcCCCceEEEECC-C
Confidence 999999999999999999999999999999999764 246899872 3456899999999999 7
Q ss_pred CceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEe
Q 008289 214 GSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHV 293 (571)
Q Consensus 214 ~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~ 293 (571)
+.+.|+|+++|.+.+++..++||||+|+||+||||||||||||+|||||||||+||++|||+|++||++|||++|.|+|+
T Consensus 166 ~~~~~~D~v~G~~~~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~ 245 (488)
T 3afh_A 166 GKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHI 245 (488)
T ss_dssp SEEEEEETTTEEEEEEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEE
T ss_pred CceeEEeccceeEeecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEE
Confidence 89999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHh
Q 008289 294 SLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWM 373 (571)
Q Consensus 294 pli~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wl 373 (571)
|+|+|.+|+|||||+|+.+|.+||++||+||||+|||++|||+++++ +++|++++++.|+++++++++++||++||.||
T Consensus 246 pli~~~~g~KLSKR~g~~~l~~~r~~G~~peal~n~l~~lG~s~~~~-e~~s~~e~i~~f~~~~i~~~~~~fd~~kl~~~ 324 (488)
T 3afh_A 246 PLILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGD-EIFTIEEKLQSFDPKDISNKGVIFDYQKLEWV 324 (488)
T ss_dssp CCEECTTSSBCCTTTSCCBHHHHHHHTCCHHHHHHHHHHTTCCCSSC-SCCCHHHHGGGCCGGGSCSSCEECCHHHHHHH
T ss_pred eeeeCCCCCcccCcCCcccHHHHHHCCCCHHHHHHHHHHhCCCCccc-ccCCHHHHHhhCChhhcCccccccChHHhhhc
Confidence 99999999999999999999999999999999999999999998766 99999999999999999999999999999999
Q ss_pred hHHHHhcCChhHHHHHHHHHHHHcCC-CCCCCchhHHHHHHHHhccccchhhHHHHHHhhhcCCcccCCCchhchhhccc
Q 008289 374 NGQHLRAIPSNELTKLIGERWKSTGI-LTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVED 452 (571)
Q Consensus 374 N~~~ir~l~~~~l~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~k~r~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (571)
|++||++++.+++.+++.+++.+.|. +...+.+++.+++.++++|++++.|+.+++.+||..+. .++....++.+.+
T Consensus 325 N~~~i~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~l~~~~~~~~~r~~~l~el~~~~~~~f~~~~--~~~~~~~~k~l~~ 402 (488)
T 3afh_A 325 NGKHMRRIDLEDLKREFIEWAKYAGKEIPSVDERYFSETLRICREKVNTLSQLYDIMYPFMNDDY--EYEKDYVEKFLKR 402 (488)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHTTSCSSHHHHHHHHHHHHCSCC--CCCHHHHHHTTTS
T ss_pred cHHHHhcCCHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCC--CcCHHHHHhhcCc
Confidence 99999999999999999999988873 22234578999999999999999999999998886432 2333334445544
Q ss_pred c-HHHHHHHHHHHHcCCchhhhhhhchHhHHHHHHHHHHHhCCCchh-hhhHHHHHHhCCCCCCChHHHHHHHhHHhHHh
Q 008289 453 N-LSEVAAHLLAAYDGGELLAALEEGHAGWQKWVKGFGKTLKRKGKS-LFMPLRVLLTGKLHGPDMGASILLIHKAGTHG 530 (571)
Q Consensus 453 ~-~~evl~~lL~~L~~~~~~~~~~~~~e~i~~~ik~i~k~~giK~k~-lf~pLRvALTG~~~GP~L~~imeLLGke~~l~ 530 (571)
. ..+++..+++.|+..+ +|+.++|+++++++++ +|+|+|+ +|||||+||||+.+||+|+++|++|||+++++
T Consensus 403 ~~~~~~L~~~~~~L~~~~-----~~~~e~i~~~i~~~~~-~g~k~k~~lf~pLR~ALtG~~~GP~l~~~~~lLGke~~l~ 476 (488)
T 3afh_A 403 EEAERVLEEAKKAFKDLN-----SWNMEEIEKTLRDLSE-KGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLK 476 (488)
T ss_dssp TTHHHHHHHHHHHHHTCS-----CCSHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHSCSSCSCHHHHHHHHCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccc-----cCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHH
Confidence 4 5677788887776531 3678999999999999 9999999 99999999999999999999999999999999
Q ss_pred hhhhhcc
Q 008289 531 IVSPRAE 537 (571)
Q Consensus 531 Rl~~~~~ 537 (571)
||+.+++
T Consensus 477 RL~~al~ 483 (488)
T 3afh_A 477 RLERTLQ 483 (488)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 7
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-118 Score=976.37 Aligned_cols=465 Identities=43% Similarity=0.722 Sum_probs=435.3
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccce
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy 134 (571)
-||+||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|+++|+|||++|||+|+.||+||||
T Consensus 13 vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y 92 (481)
T 2o5r_A 13 MVRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPY 92 (481)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCC
T ss_pred EEEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCCCCCce
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCc--CCCCCHHHHHHHHhcCCCceEEEecCC
Q 008289 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGK--WATATDAEVQKELERGTPYTYRFRVPK 212 (571)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~--cr~l~~~e~~~~~~~g~~~~iR~k~~~ 212 (571)
+||+|+++|++++++|+++|+||+||||+++|+++|+.+...|.++.|+|. ||+++.+|+.+++.+|.++++|||+|.
T Consensus 93 ~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR~k~~~ 172 (481)
T 2o5r_A 93 RQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVFFKMPR 172 (481)
T ss_dssp BGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEEECCCS
T ss_pred eeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceEEEEcCC
Confidence 999999999999999999999999999999999999988888888899999 999999999999999999999999997
Q ss_pred CCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEE
Q 008289 213 GGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAH 292 (571)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H 292 (571)
+.++|+|+++|.+.+++..++||||+|+||+||||||||||||+|||||||||+||++|||+|+++|++|||+.|.|+|
T Consensus 173 -~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG~~~p~~~H 251 (481)
T 2o5r_A 173 -KDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAH 251 (481)
T ss_dssp -SCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred -CceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcCCCCCeEEE
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHH
Q 008289 293 VSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRW 372 (571)
Q Consensus 293 ~pli~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~w 372 (571)
+|++++.+|+|||||+|+.+|.+|+++||+|+||+|||++|||+++.+.++++++++++.|+++++++++++||++||.|
T Consensus 252 ~plil~~~G~KLSKR~g~~~l~~~~~~G~~peal~~~l~~lG~s~~~~~e~~~~~e~i~~f~l~~~~~~~~~fd~~kl~~ 331 (481)
T 2o5r_A 252 VSTILGPDGKKLSKRHGATSVEAFRDMGYLPEALVNYLALLGWSHPEGKELLTLEELISSFSLDRLSPNPAIFDPQKLKW 331 (481)
T ss_dssp ECCEECTTSSBCCGGGSCCBHHHHHHHTCCHHHHHHHHHTSSBCCTTCCCCCCHHHHHHHCCGGGBCSSCEECCHHHHHH
T ss_pred EeeEECCCCCcccCcCCcccHHHHHHCCCCHHHHHHHHHHhCCCCCcccccCCHHHHHHhCChhhCCccCcccChHHhhh
Confidence 99999999999999999999999999999999999999999999866679999999999999999999999999999999
Q ss_pred hhHHHHhcCChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHhccccchhhHHHHHHhhhcCCcccCCCchhchhhccc
Q 008289 373 MNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVED 452 (571)
Q Consensus 373 lN~~~ir~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~l~k~r~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (571)
+|++||++++.+++.+++.+++.+.|+.. .+.+++.+++.++++|++++.|+.+++.+||..+. .++ +.+
T Consensus 332 ~n~~~i~~~~~~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~f~~~~--~~~-------~~~ 401 (481)
T 2o5r_A 332 MNGYYLRNMPIEKLAELAKPFFEKAGIKI-IDEEYFKKVLEITKERVEVLSEFPEESRFFFEDPA--PVE-------IPE 401 (481)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHTTCCC-CCHHHHHHHHHHHTTTCSSGGGHHHHSGGGTSCCC--CCC-------CCG
T ss_pred hCHHHHHhcCHHHHHHHHHHHHHHCCCCc-ccHHHHHHHHHHHhccCCcHHHHHHHHHHHcCCCC--cCC-------Cch
Confidence 99999999999999999999999887522 34578999999999999999999999888876432 221 112
Q ss_pred cHHHHHHHHHHHHcCCchhhhhhhchHhHHHHHHHHHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHhHHhHHhhh
Q 008289 453 NLSEVAAHLLAAYDGGELLAALEEGHAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIV 532 (571)
Q Consensus 453 ~~~evl~~lL~~L~~~~~~~~~~~~~e~i~~~ik~i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLGke~~l~Rl 532 (571)
...+++..+++.|+.. +|+.++|+++++++++++|+|+|++|||||+||||+.+||+|+++|++|||++|++||
T Consensus 402 ~~~~~L~~~~~~L~~~------~~~~e~i~~~i~~v~~~~g~k~k~lf~plR~aLtG~~~GP~l~~~~~llGke~~l~RL 475 (481)
T 2o5r_A 402 EMKEVFSQLKEELQNV------RWTMEEITPVFKKVLKQHGVKPKEFYMTLRRVLTGREEGPELVNIIPLLGKEIFLRRI 475 (481)
T ss_dssp GGHHHHHHHHHHTTTS------CSSHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSSSCCSCHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHH
Confidence 2345677777777543 3678999999999999999999999999999999999999999999999999999999
Q ss_pred hhhc
Q 008289 533 SPRA 536 (571)
Q Consensus 533 ~~~~ 536 (571)
+.++
T Consensus 476 ~~al 479 (481)
T 2o5r_A 476 ERSL 479 (481)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 9875
No 8
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=8.7e-118 Score=990.13 Aligned_cols=459 Identities=40% Similarity=0.696 Sum_probs=421.5
Q ss_pred CceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccc
Q 008289 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133 (571)
Q Consensus 54 ~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gp 133 (571)
.+|||||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|+++|+||||+||++|++||+|||
T Consensus 128 ~~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~gp 207 (592)
T 3al0_C 128 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP 207 (592)
T ss_dssp CCCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCcChhhccHHHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCC
Q 008289 134 YRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKG 213 (571)
Q Consensus 134 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~ 213 (571)
|+||+|.++|++++++|+++|+||+||||++||+++ .++.|+|+| +++.+|.++++|||+| +
T Consensus 208 ~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~--------~~~~Y~~~~---------~~~~~g~~~~iR~k~~-~ 269 (592)
T 3al0_C 208 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKE--------LFTTYEYPH---------EYKEKGHPVTIKFKVL-P 269 (592)
T ss_dssp CBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEE--------CCCCSSCCH---------HHHHTTCCEEEEECCC-S
T ss_pred eeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhh--------cCCCCCcHH---------HHhhcCCCceEEEECC-C
Confidence 999999999999999999999999999999999764 356899872 3467899999999999 6
Q ss_pred CceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEe
Q 008289 214 GSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHV 293 (571)
Q Consensus 214 ~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~ 293 (571)
+.+.|+|+++|.+.+++..++||||+|+||+||||||||||||+|||||||||+||++|||+|++||++|||+.|.|+|+
T Consensus 270 ~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~hl 349 (592)
T 3al0_C 270 GKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHI 349 (592)
T ss_dssp SCCEECCTTTCSEECCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEE
T ss_pred CCceeeecccceeeeccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEe
Confidence 89999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHh
Q 008289 294 SLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWM 373 (571)
Q Consensus 294 pli~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wl 373 (571)
|+|+|.+|+|||||+|+.+|.+||++||+|+||+|||++|||+++++ +++|+++++++|+++++++++++||++||.||
T Consensus 350 pli~~~~g~KLSKR~g~~~l~~~~~~G~~peal~~~l~~lG~s~~~~-e~~s~~e~i~~f~~~~i~~~~~~fd~~kl~~~ 428 (592)
T 3al0_C 350 PLILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGD-EIFTIEEKLQSFDPKDISNKGVIFDYQKLEWV 428 (592)
T ss_dssp CCCBCTTSSBCCTTTCSSBHHHHHHTTCCHHHHHHHHTTTTBCCCSC-SCCCTTTTGGGCCTTSBCSSCCBCCHHHHHHH
T ss_pred eeeeCCCCCcccccCCcccHHHHHHCCCCHHHHHHHHHHhCCCCccc-ccCCHHHHHhhCChhhcCcccceeCHHHHhhh
Confidence 99999999999999999999999999999999999999999998766 99999999999999999999999999999999
Q ss_pred hHHHHhcCChhHHHHHHHHHHHHcCC-CCCCCchhHHHHHHHHhccccchhhHHHHHHhhhcCCcccCCCchhchhhccc
Q 008289 374 NGQHLRAIPSNELTKLIGERWKSTGI-LTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLTSSEGKSIVED 452 (571)
Q Consensus 374 N~~~ir~l~~~~l~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~k~r~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (571)
|++||++++.+++++++.+++.+.|. +...+.+++.+++.++++|++++.|+.+++.+||..+. .++.....+.+.+
T Consensus 429 N~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~l~el~~~~~~~f~~~~--~~~~~~~~k~l~~ 506 (592)
T 3al0_C 429 NGKHMRRIDLEDLKREFIEWAKYAGKEIPSVDERYFSETLRICREKVNTLSQLYDIMYPFMNDDY--EYEKDYVEKFLKR 506 (592)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHTCCCCCCCTTTHHHHHHHHHTTCSSSSHHHHTTGGGTCSCC--CCCTTHHHHHTSS
T ss_pred hHHHhhcCCHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCC--CcCHHHHHhhcCc
Confidence 99999999999999999999998873 22233478999999999999999999999888776432 2332333444544
Q ss_pred c-HHHHHHHHHHHHcCCchhhhhhhchHhHHHHHHHHHHHhCCCchh-hhhHHHHHHhCCCCCCChHHHHHHHhHHhHHh
Q 008289 453 N-LSEVAAHLLAAYDGGELLAALEEGHAGWQKWVKGFGKTLKRKGKS-LFMPLRVLLTGKLHGPDMGASILLIHKAGTHG 530 (571)
Q Consensus 453 ~-~~evl~~lL~~L~~~~~~~~~~~~~e~i~~~ik~i~k~~giK~k~-lf~pLRvALTG~~~GP~L~~imeLLGke~~l~ 530 (571)
. ..+++..+++.|+..+ +|+.++|+++++++++ +|+|+|+ +|||||+||||+.+||+|+++|++|||+++++
T Consensus 507 ~~~~~~L~~~~~~L~~~~-----~~~~e~i~~~i~~~~~-~g~k~k~~lf~pLR~ALtG~~~GP~l~~~~~lLGke~~l~ 580 (592)
T 3al0_C 507 EEAERVLEEAKKAFKDLN-----SWNMEEIEKTLRDLSE-KGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLK 580 (592)
T ss_dssp SSHHHHHHHHHHHHHSCS-----CCSSHHHHHHHHHHTT-TTSSCHHHHHHHHHHHHTSSSCCSCHHHHTTSSHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccc-----cCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHH
Confidence 4 5677888888776531 3678999999999999 9999999 99999999999999999999999999999999
Q ss_pred hhhhhcccC
Q 008289 531 IVSPRAEFV 539 (571)
Q Consensus 531 Rl~~~~~fv 539 (571)
||+.++.++
T Consensus 581 RL~~al~~~ 589 (592)
T 3al0_C 581 RLERTLQFL 589 (592)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHh
Confidence 999887654
No 9
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=100.00 E-value=6.1e-85 Score=673.10 Aligned_cols=280 Identities=29% Similarity=0.512 Sum_probs=249.1
Q ss_pred CceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccc
Q 008289 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGP 133 (571)
Q Consensus 54 ~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gp 133 (571)
++|||||||||||+|||||+||||+||++||++||+|+|||||||++|++++++++|++||+||||+||++ |
T Consensus 4 ~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~~D~~--------~ 75 (298)
T 1nzj_A 4 TQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGD--------V 75 (298)
T ss_dssp CCCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSC--------C
T ss_pred CCeEEEECcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCCCCCC--------C
Confidence 46999999999999999999999999999999999999999999999999999999999999999999996 7
Q ss_pred eeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCC
Q 008289 134 YRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKG 213 (571)
Q Consensus 134 y~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~ 213 (571)
|+||+|++.|++++++|+++|+||+||||++||++. | ..|+|+||+++.+ |.++++|||+|.
T Consensus 76 ~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~-------~--~~Y~g~cr~~~~~--------g~~~~~R~r~~~- 137 (298)
T 1nzj_A 76 LWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSI-------G--GIYDGHCRVLHHG--------PDNAAVRIRQQH- 137 (298)
T ss_dssp EEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHT-------T--SSCCCTTTTTCCC--------STTCEEEECCSS-
T ss_pred eeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHc-------C--CCCCCccccCCcC--------CCCCcEEEecCC-
Confidence 999999999999999999999999999999999653 2 2799999998743 678899999995
Q ss_pred CceEEEeeccceeeccCC-CCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEE
Q 008289 214 GSLKISDLIRGEVSWNLD-TLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAH 292 (571)
Q Consensus 214 ~~~~~~D~v~G~i~~~~~-~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H 292 (571)
+.+.|+|+++|.+.++.+ +++||||+|+||+|||||||||||++|||||||||+||++|||+|++||++|||+.|.|+|
T Consensus 138 ~~~~f~D~~~G~~~~~~~~~~~D~VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~~~H 217 (298)
T 1nzj_A 138 PVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIH 217 (298)
T ss_dssp CCCEEEETTTEEEECCHHHHHSCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred cccceehhhCcccccCcccCCCCEEEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCeEEE
Confidence 689999999999988764 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCcccccCCCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHH----HHHHhcCccccccCCC
Q 008289 293 VSLILAPDRSKLSKRHGATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLK----QLVEKFTIERVNKSGA 363 (571)
Q Consensus 293 ~pli~~~~g~KLSKR~g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~----eli~~F~~~~~~~s~~ 363 (571)
+|+|+|.+|+|||||+|+.+|.+++.+ .++.|||++|||+++.+.|++|++ +++++|+++++++++.
T Consensus 218 ~pll~~~~g~KLSKR~g~~~v~~~~~~----~~~~~~l~~lG~~~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~~ 288 (298)
T 1nzj_A 218 LPLALNPQGAKLSKQNHAPALPKGDPR----PVLIAALQFLGQQAEAHWQDFSVEQILQSAVKNWRLTAVPESAI 288 (298)
T ss_dssp ECBCCC-------------CCCSSCCH----HHHHHHHHHTTCCCCSCGGGSCHHHHHHHHHHTCCGGGSCCCSB
T ss_pred eeeeECCCCCcccccCCccChhcCCcc----HHHHHHHHHcCCCCCcccccCCHHHHHHHHHHhCCHhhCCCCCC
Confidence 999999999999999999999887554 569999999999988777999987 5799999999999985
No 10
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=1.8e-80 Score=679.74 Aligned_cols=316 Identities=21% Similarity=0.319 Sum_probs=276.1
Q ss_pred cCCCCCCCCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCC
Q 008289 46 STNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGP 125 (571)
Q Consensus 46 ~~~~~~~~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp 125 (571)
.++++...++||||||||||||||||||||||+||++||++||+|||||||||++|++++|+++|++||+||||+||++
T Consensus 17 ~dl~~~~~~~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~R~~~e~~~~I~edL~wLGl~wde~- 95 (553)
T 1qtq_A 17 EDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGN- 95 (553)
T ss_dssp HHHHHTSCSSCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSSS-
T ss_pred hHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCchhcCHHHHHHHHHHHHHcCCCCCCC-
Confidence 3444444567999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHH---HHHhcCC
Q 008289 126 GVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQ---KELERGT 202 (571)
Q Consensus 126 ~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~---~~~~~g~ 202 (571)
||+||+|++.|+++|++|+++|+||+||||++|+++.|.. ...+.|++.||+++.+|.. ++|.+|.
T Consensus 96 -------~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~----~~~~g~~~~~R~~s~ee~~~~fe~m~~G~ 164 (553)
T 1qtq_A 96 -------VRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGT----LTQPGKNSPYRDRSVEENLALFEKMRAGG 164 (553)
T ss_dssp -------CEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCC----SSSCCCCCTTTTCCHHHHHHHHHHHHTTC
T ss_pred -------CeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcc----cccCCCCCccccCchhhhHhHHHHHhCCC
Confidence 7999999999999999999999999999999999987732 2245788889999998754 5788887
Q ss_pred ----CceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEe---------cC---CccccchhhhHhhhcCCCcEEEeC
Q 008289 203 ----PYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMR---------SN---GQPVYNFCVTVDDATMAISHVIRA 266 (571)
Q Consensus 203 ----~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~R---------sd---G~PtY~fA~vVDD~~m~ItHVIRG 266 (571)
++++|+|++. ...+..++||||+| +| |+||||||||||||+|||||||||
T Consensus 165 ~~~g~~~lR~kid~--------------~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg 230 (553)
T 1qtq_A 165 FEEGKACLRAKIDM--------------ASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCT 230 (553)
T ss_dssp SCTTSCEEEECSCT--------------TCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEE
T ss_pred ccCCceEEEEeccc--------------ccCCCCCCCcEEEEecCCCCCccCCCCccccccccccEEEeccCCcceEeec
Confidence 7888988753 22344779999999 67 599999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhCCC-CCcEEEeeeeecCCCCcccccCC----------------CCchHHHHHCCCCHHHHHHH
Q 008289 267 EEHLPNTLRQALIYKALGFS-MPYFAHVSLILAPDRSKLSKRHG----------------ATSVGQFREMGYLPQAMVNY 329 (571)
Q Consensus 267 ~Dhl~ntp~q~~l~~alg~~-~P~f~H~pli~~~~g~KLSKR~g----------------~~~v~~~r~~G~~Peai~n~ 329 (571)
+||++|||+|.+||++|||+ .|.++|+..+ +.+|+|||||+| ..+|.+||++||+|+||+||
T Consensus 231 ~e~~~n~~~q~~l~~alg~~~~P~~~~f~hL-n~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnf 309 (553)
T 1qtq_A 231 LEFQDNRRLYDWVLDNITIPVHPRQYEFSRL-NLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 309 (553)
T ss_dssp GGGTTTHHHHHHHHHTSCCSCCCEEEEECCC-CBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHcCCCCCCCeEEEEee-cCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHH
Confidence 99999999999999999998 7977777774 779999999996 46799999999999999999
Q ss_pred HHHhCCCCCCC-cccCCHHHHHHhcCcccc-ccCCCcccHHHHHHhh--H--HHH---hcCChhHHHHH
Q 008289 330 LALLGWGDGTE-NEFFTLKQLVEKFTIERV-NKSGAIFDSTKLRWMN--G--QHL---RAIPSNELTKL 389 (571)
Q Consensus 330 l~~lG~~~~~~-~e~~s~~eli~~F~~~~~-~~s~~~fd~~kL~wlN--~--~~i---r~l~~~~l~~~ 389 (571)
|+++||+..+. .++++++++++ |+++++ ++++++||+.||.|+| + +|+ +..+.+++..+
T Consensus 310 l~~lG~s~~~~~~e~~~le~~~~-~~l~~~~~r~~av~d~~Kl~~~N~~~~~~~~~~p~~p~~~~~g~r 377 (553)
T 1qtq_A 310 CKRIGVTKQDNTIEMASLESCIR-EDLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMGSR 377 (553)
T ss_dssp HHHHCCCSSCCCBCHHHHHHHHH-HHHHHHSCEECEESSEEEEEBTTCCSSCEEEEEESCSSCGGGCEE
T ss_pred HHHcCCCCCccccchhhHHHHHH-hCcccccccccceeccceEEEEcCCCceEEEEecCCCCChHHhhh
Confidence 99999998765 48999999888 999994 5899999999999999 4 566 44444544333
No 11
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=1.4e-76 Score=673.06 Aligned_cols=302 Identities=25% Similarity=0.364 Sum_probs=264.5
Q ss_pred cCCCCCCCCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCC
Q 008289 46 STNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGP 125 (571)
Q Consensus 46 ~~~~~~~~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp 125 (571)
.+++....++||||||||||||||||||||||+||++||++||+|||||||||++|++++|+++|++||+||||+||++
T Consensus 57 ~dl~~g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~IledL~wLGl~wde~- 135 (851)
T 2hz7_A 57 RDLEAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLDWGEH- 135 (851)
T ss_dssp HHHHTTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHHHHHTCCCTTC-
T ss_pred HHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCCC-
Confidence 4444444557999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHH---HHHhcCC
Q 008289 126 GVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQ---KELERGT 202 (571)
Q Consensus 126 ~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~---~~~~~g~ 202 (571)
||+||+|++.|++++++|+++|+||+||||++|+++.|... ..+.|++.||+++.+|.. ++|.+|.
T Consensus 136 -------~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~----~~~G~~s~~R~ls~ee~l~~fe~m~~G~ 204 (851)
T 2hz7_A 136 -------FYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNA----TTPGTPSPYRDRSVEENLDLLRRMKAGE 204 (851)
T ss_dssp -------EEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBT----TBCCCCCTTTTCCHHHHHHHHHHHHTTC
T ss_pred -------cccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcch----hccCCCcccccCCHHHHhhHHHHHhcCC
Confidence 79999999999999999999999999999999999876321 224677789999998753 6788887
Q ss_pred ----CceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEecC------------CccccchhhhHhhhcCCCcEEEeC
Q 008289 203 ----PYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSN------------GQPVYNFCVTVDDATMAISHVIRA 266 (571)
Q Consensus 203 ----~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rsd------------G~PtY~fA~vVDD~~m~ItHVIRG 266 (571)
++++|+|++. ...+.+++||||+|++ |+||||||||||||+|||||||||
T Consensus 205 ~~~g~~vlR~Kid~--------------~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG 270 (851)
T 2hz7_A 205 FADGEHVLRAKIDL--------------TAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCS 270 (851)
T ss_dssp SCTTSCEEEECCCT--------------TCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEE
T ss_pred cccCCeeEEEeccc--------------cccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeeccCCcceeecc
Confidence 8999999863 1233467899999987 799999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhCCCC-CcEEEeeeeecCCCCcccccCC----------------CCchHHHHHCCCCHHHHHHH
Q 008289 267 EEHLPNTLRQALIYKALGFSM-PYFAHVSLILAPDRSKLSKRHG----------------ATSVGQFREMGYLPQAMVNY 329 (571)
Q Consensus 267 ~Dhl~ntp~q~~l~~alg~~~-P~f~H~pli~~~~g~KLSKR~g----------------~~~v~~~r~~G~~Peai~n~ 329 (571)
+||++|||+|.+||++|||+. |.++|+..| +.+|+|||||++ ..+|.+||++||+|+||+||
T Consensus 271 ~D~~~n~~~q~~l~~alG~~~~P~~~~fahL-n~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~f 349 (851)
T 2hz7_A 271 LEFVDNRAIYDWLMEKLNFDPRPHQYEFGRR-GLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAF 349 (851)
T ss_dssp GGGTTTHHHHHHHHHHTTCSSCCEEEEECCE-EETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHH
T ss_pred hhhhhChHHHHHHHHHcCCCCCCCceEEEEe-cCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHH
Confidence 999999999999999999986 965555553 458999999995 36799999999999999999
Q ss_pred HHHhCCCCCCC-cccCCHHHHHHhcCcccc-ccCCCcccHHHHHHhhH
Q 008289 330 LALLGWGDGTE-NEFFTLKQLVEKFTIERV-NKSGAIFDSTKLRWMNG 375 (571)
Q Consensus 330 l~~lG~~~~~~-~e~~s~~eli~~F~~~~~-~~s~~~fd~~kL~wlN~ 375 (571)
|+++||+..+. .++++++.++ .|+++++ ++++++||+.||.|+|-
T Consensus 350 l~~lG~s~~~~~~e~~~le~~~-r~~l~~~~~r~~av~d~~Kl~~~N~ 396 (851)
T 2hz7_A 350 AAQIGVSRTNRTVDIAVYENAV-RDDLNHRAPRVMAVLDPVKVTLTNL 396 (851)
T ss_dssp HHHSCCCSSCEEECHHHHHHHH-HHHHHTTCCEECEESSEEEEEETTC
T ss_pred HHhcCCCCCcccccHHHHHHHH-HhcccccccccceEecceeEEEecC
Confidence 99999997654 3677777555 5899994 68999999999999995
No 12
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=2.6e-75 Score=639.03 Aligned_cols=259 Identities=32% Similarity=0.547 Sum_probs=223.9
Q ss_pred cCCCCCCCCceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccCcHHHHHHHHHHHHHcCCCCCCCC
Q 008289 46 STNTNKVDGQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEEAVLQDLSWLGLDWDEGP 125 (571)
Q Consensus 46 ~~~~~~~~~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R~~~~~~~~i~~~L~wlGl~~Degp 125 (571)
.++|++ +++||||||||||||||||||||||+||++||++||+|+|||||||++|+.++|+++|++||+||||+||+
T Consensus 88 ~~L~~~-~g~v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~R~~~e~~~~I~edL~wLGl~wd~-- 164 (553)
T 3aii_A 88 RELAGV-KGEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDE-- 164 (553)
T ss_dssp CCCSSC-CSCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCSE--
T ss_pred CCCCCC-CCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCC--
Confidence 456666 67899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHH---HHHhcCC
Q 008289 126 GVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQ---KELERGT 202 (571)
Q Consensus 126 ~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~---~~~~~g~ 202 (571)
+|+||+|++.|++++++|+++|+||+||||++++++.|.. .+.++||+++.+|.. +.|.+|.
T Consensus 165 -------~~~qSdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~--------g~~~~cR~~s~ee~l~~f~~m~~G~ 229 (553)
T 3aii_A 165 -------TVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNR--------GEACHCRSLGFRENLQRWREMFEMK 229 (553)
T ss_dssp -------EEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHT--------TCCCGGGGCCHHHHHHHHHHGGGSC
T ss_pred -------CcccccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhc--------CCCCccccCCHHHHHHHHHHHhcCC
Confidence 5899999999999999999999999999999999887742 356889999998754 3577886
Q ss_pred C--ceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEec---------C---CccccchhhhHhhhcCCCcEEEeCCC
Q 008289 203 P--YTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS---------N---GQPVYNFCVTVDDATMAISHVIRAEE 268 (571)
Q Consensus 203 ~--~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rs---------d---G~PtY~fA~vVDD~~m~ItHVIRG~D 268 (571)
+ +++|+|++. ...+.+++||||+|+ | |+||||||||||||+|||||||||+|
T Consensus 230 ~g~~~lR~k~d~--------------~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D 295 (553)
T 3aii_A 230 EGSAVVRVKTDL--------------NHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKD 295 (553)
T ss_dssp TTSCEEEECCCT--------------TCSSGGGTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC---
T ss_pred cCceEEEEEccc--------------ccCCCCCCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHh
Confidence 5 899998753 123346799999997 4 69999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCCcccccCC----------------CCchHHHHHCCCCHHHHHHHHHH
Q 008289 269 HLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHG----------------ATSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 269 hl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g----------------~~~v~~~r~~G~~Peai~n~l~~ 332 (571)
|++|||+|.+||++|||+.|.|+|+|+| +.+|+|||||+| ..+|.+||++||+|+||+|||+.
T Consensus 296 ~~~nt~~Q~~l~~alG~~~P~y~H~~~L-~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~ 374 (553)
T 3aii_A 296 HLANREKQEYLYRHLGWEPPEFIHYGRL-KMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVE 374 (553)
T ss_dssp --CHHHHHHHHHHHHTCCCCEEECCCCB-C-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHH
T ss_pred hhhCHHHHHHHHHHcCCCCCeEEEeeEE-ecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHh
Confidence 9999999999999999999999999997 679999999997 46799999999999999999999
Q ss_pred hCCCC
Q 008289 333 LGWGD 337 (571)
Q Consensus 333 lG~~~ 337 (571)
+||+.
T Consensus 375 ~G~s~ 379 (553)
T 3aii_A 375 IGVKI 379 (553)
T ss_dssp HTTCS
T ss_pred cCCCC
Confidence 99964
No 13
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=100.00 E-value=3.7e-61 Score=531.44 Aligned_cols=437 Identities=15% Similarity=0.170 Sum_probs=311.9
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHH-----HHcCCeEEEEecCCCcccCc--------H-----------------
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFA-----RSKGGKFVLRIEDTDLERST--------K----------------- 104 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~A-----r~~~G~fiLRieDTD~~R~~--------~----------------- 104 (571)
.++..-||||||++||||+|||++|+++| +.++|+|++||||||+.|.+ +
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 34444499999999999999999997774 66899999999999976655 3
Q ss_pred -----HHHHHHHHHHHHcCCCCCCCCCCCCCccceeccc-cHH-HHHHHHHHHHHcC-CcccccCCHHHHHHHHHHHHhC
Q 008289 105 -----ESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSE-RNS-LYKQYADKLLESG-HVYRCFCSNEELEKMKEIAKLK 176 (571)
Q Consensus 105 -----~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~QSe-r~~-~Y~~~a~~Li~~G-~AY~Cfcs~eel~~~r~~~~~~ 176 (571)
.+++.|+++|+||||+||. |+||+ |.+ .|++++++|+++| ++|.|++....+. +..+...
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D~----------~~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~--~~~~y~~ 168 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVDL----------LYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIA--KQPPLPE 168 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCEE----------EEHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHT--TCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHcCCCceE----------EechhhccchHHHHHHHHHHHchHHHHHHHHhhcccc--ccccccC
Confidence 4999999999999999995 79999 999 9999999999999 8998873211100 0001111
Q ss_pred CCCC--CCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeeccc--eeeccCCCCCCeEEEecCCccccchhhh
Q 008289 177 QLPP--VYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRG--EVSWNLDTLGDFVIMRSNGQPVYNFCVT 252 (571)
Q Consensus 177 ~~~~--~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G--~i~~~~~~~~D~Vl~RsdG~PtY~fA~v 252 (571)
+..+ .|+..|+.++.+ + .. .+. .++||++. .+.+.|.|.++| +..+.. |+ |+|+|+|+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~-~--~~-~~~-~~~~f~~~-~g~~~~~d~~~G~g~~~w~~----d~------~~~~~~l~~~ 232 (523)
T 1irx_A 169 NWWPAMVYCPEHRREAEI-I--EW-DGG-WKVKYKCP-EGHEGWVDIRSGNVKLRWRV----DW------PMRWSHFGVD 232 (523)
T ss_dssp TCCSEEEECTTTCCEECE-E--EE-CSS-SCEEECCS-SSCCCEECTTSSCEEECHHH----HH------HHHHHHSCCC
T ss_pred CceeccccchhhCCcccc-c--cc-CCC-Cceeeeec-CCCccccCCcCCCCCCCCCc----ch------HhhHHHcCCC
Confidence 1112 466778765422 1 01 122 46899984 588899999854 444433 22 7899999999
Q ss_pred HhhhcCCCcEEEeCCCCCCCHHHHHHHH-HHhCCCCCcEEEeeeeecC-CCCcccccCCCC-chHHHHHCCCCHHHHHHH
Q 008289 253 VDDATMAISHVIRAEEHLPNTLRQALIY-KALGFSMPYFAHVSLILAP-DRSKLSKRHGAT-SVGQFREMGYLPQAMVNY 329 (571)
Q Consensus 253 VDD~~m~ItHVIRG~Dhl~ntp~q~~l~-~alg~~~P~f~H~pli~~~-~g~KLSKR~g~~-~v~~~r~~G~~Peai~n~ 329 (571)
|| .||++|+.+|- |++.+..++ ++||+++|.|.|+++|++. +|+|||||+|+. ++.+++++ |.|+||+||
T Consensus 233 vd--~~G~Dh~~~h~----s~~~~~~i~~~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~-~~pdalR~~ 305 (523)
T 1irx_A 233 FE--PAGKDHLVAGS----SYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEV-LEPGLVRFI 305 (523)
T ss_dssp BC--CEEHHHHSTTS----HHHHHHHHHHHHHCCCCCBCCEECCEEESCC---------CCCCHHHHHTT-SCHHHHHHH
T ss_pred Cc--CCCcCccCCCc----chhhHHHHHHHHhCCCCCeEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHH-cCHHHHHHH
Confidence 88 78888877651 233333344 7999999999999999987 799999999985 99999999 999999999
Q ss_pred HHHhCCCCCCCcccCCHH-HHHHhc-CccccccCCCcccHH--HHHHhhHHH-HhcC-ChhHHHHHHHHHH--HHcCCCC
Q 008289 330 LALLGWGDGTENEFFTLK-QLVEKF-TIERVNKSGAIFDST--KLRWMNGQH-LRAI-PSNELTKLIGERW--KSTGILT 401 (571)
Q Consensus 330 l~~lG~~~~~~~e~~s~~-eli~~F-~~~~~~~s~~~fd~~--kL~wlN~~~-ir~l-~~~~l~~~~~~~~--~~~~~~~ 401 (571)
|++.||.. ...||.+ ++.+.+ .++++.++...+|.. ||.|+|++| |+++ +++++. ...++. ...+-+.
T Consensus 306 l~~~~~~~---~~~fs~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~n~~~~i~~~~~~~~~~-~~~p~~~~~~~~~~~ 381 (523)
T 1irx_A 306 YARHRPNK---EIKIDLGLGILNLYDEFEKVERIYFGVEGGKGDDEELRRTYELSMPKKPERLV-AQAPFRFLAVLVQLP 381 (523)
T ss_dssp HHSSCTTS---CEEECCSTTHHHHHHHHHHHHHHHTTSCC-----CHHHHHHHHHCSSCCCCCC-CCCCHHHHHHHTTCT
T ss_pred HHhcCCCC---CceeCcchhHHHHHHHHHHHHHHHhcccccchhhhhhcceeEeeccCCCCCCC-CCCCHHHHHHHHhhc
Confidence 99888853 3455555 444433 335777766667766 699999999 9997 665533 444552 2222112
Q ss_pred CCCchhHHHHHHH--------HhccccchhhHHHHHHhhhcCCccc--CC--CchhchhhccccHHHHHHHHHHHHcCCc
Q 008289 402 ESKGPFVDEAIQL--------LKDGIDLVPDSDKALSNLLSYPLRD--TL--TSSEGKSIVEDNLSEVAAHLLAAYDGGE 469 (571)
Q Consensus 402 ~~~~~~l~~~~~l--------~k~r~~~l~d~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~evl~~lL~~L~~~~ 469 (571)
..+.+++.+++.+ ++++++++.++.+.+.++|..+.+. .+ ......+.+.+...+++..+++.|+..+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~~L~~~~ 461 (523)
T 1irx_A 382 HLTEEDIINVLIKQGHIPRDLSKEDVERVKLRINLARNWVKKYAPEDVKFSILEKPPEVEVSEDVREAMNEVAEWLENHE 461 (523)
T ss_dssp TCCHHHHHHHHHHTTSSCSSCCHHHHHHHHHHHHHHHHHHHHTSCGGGCCCCCSSCCCCCCCHHHHHHHHHHHHHHHSCS
T ss_pred CCCHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHhCchhheecccccccccCCCHHHHHHHHHHHHHHhcCC
Confidence 2334678889999 9999999999999988877543211 12 1112222333344566777777776532
Q ss_pred hhhhhhhchHhHHHHHHHHHHHhCCCchhhhhHHHHHHhCCCCCCChHHHHHHHhHHhHHhhhhhh
Q 008289 470 LLAALEEGHAGWQKWVKGFGKTLKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVSPR 535 (571)
Q Consensus 470 ~~~~~~~~~e~i~~~ik~i~k~~giK~k~lf~pLRvALTG~~~GP~L~~imeLLGke~~l~Rl~~~ 535 (571)
+|+.++++++++++++++|+|+|++|||||+||||+.+||+|+++|++|||+++++||+.+
T Consensus 462 -----~~~~e~i~~~i~~~~~~~g~k~~~lf~plR~altG~~~gP~l~~~l~lLGke~~l~Rl~~~ 522 (523)
T 1irx_A 462 -----EFSVEEFNNILFEVAKRRGISSREWFSTLYRLFIGKERGPRLASFLASLDRSFVIKRLRLE 522 (523)
T ss_dssp -----SCCHHHHHHHHHHHHHHHTCBHHHHHHHHHHHHHSSSSCSCHHHHHHTSCHHHHHHHHTTC
T ss_pred -----CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHhCHHHHHHHHHhc
Confidence 2678999999999999999999999999999999999999999999999999999999863
No 14
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.89 E-value=4.2e-23 Score=230.92 Aligned_cols=254 Identities=18% Similarity=0.132 Sum_probs=186.4
Q ss_pred ceEEEe-CCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCc-----------------------------
Q 008289 55 QVRVRF-APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDL----------------------------- 99 (571)
Q Consensus 55 ~vr~RF-APSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDTD~----------------------------- 99 (571)
+|.+=| .|.|||++||||+|++++-..+||- +...++--|.|.+.
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~ 183 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRA 183 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHH
Confidence 444444 4788899999999999987777774 44445555666531
Q ss_pred -----------------------------ccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccceecccc--HHHHHHHHH
Q 008289 100 -----------------------------ERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSER--NSLYKQYAD 148 (571)
Q Consensus 100 -----------------------------~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~QSer--~~~Y~~~a~ 148 (571)
++..+.+.+.+.++++|||+.+|.- ++.|+. .+.++++++
T Consensus 184 y~~~~~~~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~~D~~---------~~es~~~~~~~v~~~~~ 254 (592)
T 1iq0_A 184 YVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLL---------VWESDIVRAGLLQKALA 254 (592)
T ss_dssp HHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEE---------EEHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCEeEEe---------ccCCcccccchHHHHHH
Confidence 2334556788999999999999962 366665 778999999
Q ss_pred HHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeeccceeec
Q 008289 149 KLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSW 228 (571)
Q Consensus 149 ~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~ 228 (571)
+|.++|++|+|. .| .|+| . +-++++.. |
T Consensus 255 ~L~~kG~~y~~~---------------~g---~~~G-----------------~---~~~~~~~~----------g---- 282 (592)
T 1iq0_A 255 LLEQSPHVFRPR---------------EG---KYAG-----------------A---LVMDASPV----------I---- 282 (592)
T ss_dssp HHTTSTTEECCS---------------SS---TTTT-----------------C---EEEECTTT----------S----
T ss_pred HHHHCCCcccCc---------------cc---CcCC-----------------C---EEEechhc----------C----
Confidence 999999999972 11 2332 1 22233321 1
Q ss_pred cCCCCCCeEEEecCCccccch---hhhHh------hh-cC----------------------CCcEE--EeCCCCCCCHH
Q 008289 229 NLDTLGDFVIMRSNGQPVYNF---CVTVD------DA-TM----------------------AISHV--IRAEEHLPNTL 274 (571)
Q Consensus 229 ~~~~~~D~Vl~RsdG~PtY~f---A~vVD------D~-~m----------------------~ItHV--IRG~Dhl~ntp 274 (571)
+...+++.|+.|+||.|||.+ |.+++ |+ .. +.+|+ |+|.||..+++
T Consensus 283 ~~~~l~~~vi~ksdG~~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~ 362 (592)
T 1iq0_A 283 PGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQA 362 (592)
T ss_dssp CSCSCCEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHH
T ss_pred CCCCCCceEEEecCCceEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhcccccCcccCCCCCCEEEEEEeccHHHHHH
Confidence 112346799999999999987 66666 22 21 78899 58999999999
Q ss_pred HHHHHHHHhCCCCC--cEEEee--eeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHH--
Q 008289 275 RQALIYKALGFSMP--YFAHVS--LILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLK-- 347 (571)
Q Consensus 275 ~q~~l~~alg~~~P--~f~H~p--li~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~-- 347 (571)
++..+++++|++.| .+.|++ +|+. +|+|||||.|+ +++.++.+.|+ +++.+++...++..+ +.| .+.
T Consensus 363 ~~~~~~~alG~~~~~~~~~H~~~g~v~~-~g~KMSKr~Gn~v~l~dll~~~~--~~~~~~~~~~~~~~~-~~e--~~a~~ 436 (592)
T 1iq0_A 363 LVRAALALAGYPALAEKAHHLAYETVLL-EGRQMSGRKGLAVSVDEVLEEAT--RRARAIVEEKNPDHP-DKE--EAARM 436 (592)
T ss_dssp HHHHHHHHTTCHHHHTTEEEEEECCEEE-TTBCSCC----CCBHHHHHHHHH--HHHHHHHHHHCTTCS-CHH--HHHHH
T ss_pred HHHHHHHHcCCCCCCCcEEEEEeeEEEc-CCCcccCCCCCccCHHHHHHHHH--HHHHHHHHhhCCCCC-cHH--HHHHh
Confidence 99999999999653 688984 4754 78899999998 58999999988 888999998876433 223 333
Q ss_pred ---HHHHhcCccccccCCCcccHHHHHHhhH
Q 008289 348 ---QLVEKFTIERVNKSGAIFDSTKLRWMNG 375 (571)
Q Consensus 348 ---eli~~F~~~~~~~s~~~fd~~kL~wlN~ 375 (571)
+.+++|.+++...++..||++++.++|+
T Consensus 437 vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~~~ 467 (592)
T 1iq0_A 437 VALGAIRFSMVKTEPKKQIDFRYQEALSFEG 467 (592)
T ss_dssp HHHHHHHHHHHHSCTTSCEEECHHHHHCSSS
T ss_pred hcHHHHHHHHHhcCCCCCCeecHHHHHHHhc
Confidence 3688999999999999999999999887
No 15
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.89 E-value=1.1e-22 Score=221.21 Aligned_cols=237 Identities=20% Similarity=0.255 Sum_probs=169.5
Q ss_pred eCCCCC--CcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc---cC----------cHHHHHHHHHHHHHcCC
Q 008289 60 FAPSPT--GNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLE---RS----------TKESEEAVLQDLSWLGL 119 (571)
Q Consensus 60 FAPSPt--G~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDTD~~---R~----------~~~~~~~i~~~L~wlGl 119 (571)
|..+|| |++||||+|++++.+.+||. ++..|+.+|+|+|.+ |. .+.+.+.+.++++|||+
T Consensus 26 yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~LgI 105 (461)
T 1li5_A 26 YVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNI 105 (461)
T ss_dssp EECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 444555 99999999999999999985 567899999999975 32 56889999999999999
Q ss_pred CC-CCCCCCCCCccceeccccHHHHHHHHHHHHHcCCcccc------cCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHH
Q 008289 120 DW-DEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRC------FCSNEELEKMKEIAKLKQLPPVYTGKWATATDA 192 (571)
Q Consensus 120 ~~-Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~C------fcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~ 192 (571)
.+ |. -+++|++.+.+++++++|+++|+||.+ ||+.+. +.|...|.. +.+
T Consensus 106 ~~~d~---------~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~--------------~~yg~lsg~-~~~ 161 (461)
T 1li5_A 106 LRPDM---------EPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD--------------PTYGVLSRQ-DLD 161 (461)
T ss_dssp CCCSB---------CCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC--------------TTTTTTTTC----
T ss_pred CCCcc---------cccccchHHHHHHHHHHHHHCCCEEEecCCCEEEecccc--------------cccccccCC-CHH
Confidence 97 54 248999999999999999999999996 886641 235444432 222
Q ss_pred HHHHHHhcCCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEec--CC-----------ccccchhhhH-hhhcC
Q 008289 193 EVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS--NG-----------QPVYNFCVTV-DDATM 258 (571)
Q Consensus 193 e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rs--dG-----------~PtY~fA~vV-DD~~m 258 (571)
+ +.+|. |+. +. ....+..||+++|+ +| .|.||.+|++ .....
T Consensus 162 ~----l~~g~----rv~--------~~--------~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~l 217 (461)
T 1li5_A 162 Q----LQAGA----RVD--------VV--------DDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQL 217 (461)
T ss_dssp -------------------------------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHH
T ss_pred H----hhcCC----ccc--------ch--------hcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHh
Confidence 2 22332 111 10 01124579999986 44 4677888765 45556
Q ss_pred CCcEEEe--CCC----CCCCHHHHHHHHHHhCCCCCc-EEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHH
Q 008289 259 AISHVIR--AEE----HLPNTLRQALIYKALGFSMPY-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYL 330 (571)
Q Consensus 259 ~ItHVIR--G~D----hl~ntp~q~~l~~alg~~~P~-f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l 330 (571)
|.++.|+ |.| |+.+.+.|... ++|++.|. +.|.++++. +|+|||||.|+ +++.++.+. |.|++|+.|+
T Consensus 218 g~~~dih~gG~Dl~fpH~~~~~aq~~a--~~g~~~~~~~~h~g~v~~-~G~KMSKS~GN~v~~~dll~~-~g~dalR~~l 293 (461)
T 1li5_A 218 GNHFDIHGGGSDLMFPHHENEIAQSTC--AHDGQYVNYWMHSGMVMV-DREKMSKSLGNFFTVRDVLKY-YDAETVRYFL 293 (461)
T ss_dssp CSSEEEEECBGGGTTTHHHHHHHHHHH--HSSSCCEEEECCBCCEEE-TTBCCCGGGTCCCBHHHHHTT-SCHHHHHHHH
T ss_pred CCCceEEeccCccCchHHHHHHHHHHH--hcCCCCCcEEEEeeEEEE-CCeEccccCCCccChhHHhhh-CCHHHHHHHH
Confidence 7899999 999 55566666543 26887665 568888755 89999999998 899999886 9999999999
Q ss_pred HHhCCCCCCCcccCCHHHHHH
Q 008289 331 ALLGWGDGTENEFFTLKQLVE 351 (571)
Q Consensus 331 ~~lG~~~~~~~e~~s~~eli~ 351 (571)
+.. +....-.||.+.+.+
T Consensus 294 l~~---~~~~~~~fs~~~l~~ 311 (461)
T 1li5_A 294 MSG---HYRSQLNYSEENLKQ 311 (461)
T ss_dssp HSS---CTTSCEEECHHHHHH
T ss_pred HcC---CcCCCCCCCHHHHHH
Confidence 862 223446677776654
No 16
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.88 E-value=7.3e-23 Score=224.17 Aligned_cols=270 Identities=17% Similarity=0.186 Sum_probs=178.4
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCC----------------cccCcHHHHHHHHHHHHHc
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTD----------------LERSTKESEEAVLQDLSWL 117 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD----------------~~R~~~~~~~~i~~~L~wl 117 (571)
+++.-.|+|||.+||||+|++++...+||. ..|..++++.+|| ++...+++.+.+.++++||
T Consensus 8 ~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 87 (497)
T 2csx_A 8 YVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEFL 87 (497)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 667777999999999999999999999995 4999999999999 5667789999999999999
Q ss_pred CCCCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccc-----cCCHHHHHHHHHHHHhCCCCCCCCCcCCCCC
Q 008289 118 GLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRC-----FCSNEELEKMKEIAKLKQLPPVYTGKWATAT 190 (571)
Q Consensus 118 Gl~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C-----fcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~ 190 (571)
|+.||. +|++|+ +.+.++++.++|.++|++|.| +|+..+.... .... ...|.|.. +
T Consensus 88 gi~~d~---------~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~-~~~~------~~~~~c~~-~ 150 (497)
T 2csx_A 88 KIEYTK---------FIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKS-EAEL------AEDHTCPI-H 150 (497)
T ss_dssp TCCCSE---------EEETTSHHHHHHHHHHHHHHHHTTCEEEEEC----------------------------------
T ss_pred CCcCCC---------CccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEcc-HHHh------ccCCCCCC-C
Confidence 999996 578998 999999999999999999998 7877653211 0000 00134421 1
Q ss_pred HHHHHHHHhcCCCceEEEecCCCCce----------EE-Eeecccee-eccCCCCCCeEEEe--cC---Cc--c---ccc
Q 008289 191 DAEVQKELERGTPYTYRFRVPKGGSL----------KI-SDLIRGEV-SWNLDTLGDFVIMR--SN---GQ--P---VYN 248 (571)
Q Consensus 191 ~~e~~~~~~~g~~~~iR~k~~~~~~~----------~~-~D~v~G~i-~~~~~~~~D~Vl~R--sd---G~--P---tY~ 248 (571)
...+.. -....+.|++++-..- .+ .+..+..+ .+-...+.|++|.| .+ |. | .++
T Consensus 151 ~~~~~~----~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~ 226 (497)
T 2csx_A 151 QKKCEY----IKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHT 226 (497)
T ss_dssp -----------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEE
T ss_pred CCCCeE----EecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCce
Confidence 111111 1123566666531000 00 00000000 01112468999999 54 64 4 444
Q ss_pred ----------hhhhHhh---hcCCCcEEEeCCCCCCCHHHHH---HHHHHhCCCCCc-EEEeeeeecCCCCcccccCCC-
Q 008289 249 ----------FCVTVDD---ATMAISHVIRAEEHLPNTLRQA---LIYKALGFSMPY-FAHVSLILAPDRSKLSKRHGA- 310 (571)
Q Consensus 249 ----------fA~vVDD---~~m~ItHVIRG~Dhl~ntp~q~---~l~~alg~~~P~-f~H~pli~~~~g~KLSKR~g~- 310 (571)
++++++| ....+++.+.|.|++. +.+. ....++|+++|. +.|+++++. +|+|||||.|+
T Consensus 227 i~vW~ds~~~~~s~~~~~~~~~~p~di~~~G~D~~~--~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~G~KMSKS~GN~ 303 (497)
T 2csx_A 227 IYVWFDALFNYISALEDKVEIYWPADLHLVGKDILR--FHTVYWPAFLMSLGYELPKKVFAHGWWTV-EGKKMSKTLGNV 303 (497)
T ss_dssp ECSHHHHHTHHHHTTTTTHHHHCSCSCEEEEGGGHH--HHHTHHHHHHHHHTCCCCSCEEEECCEES-SSSBCCTTTTCC
T ss_pred EEEecccchhhcccCCCcchhhCCceEEEeecchhH--hHHHHHHHHHHHcCCCCCcEEEECcEEEe-CCceeCCcCCCC
Confidence 3555554 3347888889999985 3222 233577998886 788899876 99999999998
Q ss_pred CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHh
Q 008289 311 TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEK 352 (571)
Q Consensus 311 ~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~ 352 (571)
+++.++.+ +|-++|++.|++..+ +...+-.||.+.+.+.
T Consensus 304 i~~~dli~-~~g~DalR~~ll~~~--~~~~d~~fs~~~l~~~ 342 (497)
T 2csx_A 304 VDPYEVVQ-EYGLDEVRYFLLREV--PFGQDGDFSKKAILNR 342 (497)
T ss_dssp CCHHHHHH-HHCHHHHHHHHHHSS--CTTSCEECCHHHHHHH
T ss_pred CCHHHHHH-HCCcHHHHHHHHhcC--CcccCCCCChHHHHHH
Confidence 77888877 488999999998764 2334567888887653
No 17
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.2e-22 Score=212.53 Aligned_cols=198 Identities=12% Similarity=0.080 Sum_probs=150.6
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCcccCcHH--------HHHHHHHHHHHcCCCCC
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLERSTKE--------SEEAVLQDLSWLGLDWD 122 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD----TD~~R~~~~--------~~~~i~~~L~wlGl~~D 122 (571)
.|.++|+| ||.|||||+++|+.||.+++ .|++++++|.| |+..|...+ +.+.|..+|.|+|++||
T Consensus 41 ~vy~G~~P--TG~LHlG~~~~al~~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~ 117 (394)
T 2dlc_X 41 KLYWGTAP--TGRPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIE 117 (394)
T ss_dssp EEEEEECC--CSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred EEEEEeCC--CCCccHHHHHHHHHHHHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 58899998 79999999999999999998 89999999999 875544332 55778889999999999
Q ss_pred CCCCCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCC
Q 008289 123 EGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGT 202 (571)
Q Consensus 123 egp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~ 202 (571)
.. .+|+||++.. +.+++..++ .|.|+||..++.... . +
T Consensus 118 k~-------~i~~qS~~~~-~~~~~~~~~----~l~~~~t~~~l~r~~---------~------------~--------- 155 (394)
T 2dlc_X 118 KL-------KFVVGSSYQL-TPDYTMDIF----RLSNIVSQNDAKRAG---------A------------D--------- 155 (394)
T ss_dssp TC-------EEEETHHHHT-SHHHHHHHH----HHHTTSCHHHHHHHT---------T------------T---------
T ss_pred Hc-------EEEeCchhcc-hHHHHHHHH----HHhCcCcHHHHhccc---------H------------h---------
Confidence 74 3899999864 345555555 699999999876321 0 0
Q ss_pred CceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHH
Q 008289 203 PYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKA 282 (571)
Q Consensus 203 ~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~a 282 (571)
.+|+. ..+ +-|..+|..--+.|...++++||++|+|+..|+..++.+++.
T Consensus 156 --~~r~~---------------------~~~-------~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~rdl~~r 205 (394)
T 2dlc_X 156 --VVKQV---------------------ANP-------LLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPS 205 (394)
T ss_dssp --TSCCC---------------------SSC-------CTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGG
T ss_pred --hhccc---------------------CCc-------cceeeechhHhhccHhhhCCCEEecCccHHHHHHHHHHHHHH
Confidence 00100 000 345678888888899999999999999999999999999999
Q ss_pred hCCCCCcEEEeeeeecCC-CCcccccCCC--CchHHHHHCCCCHHHHHHHHHHh
Q 008289 283 LGFSMPYFAHVSLILAPD-RSKLSKRHGA--TSVGQFREMGYLPQAMVNYLALL 333 (571)
Q Consensus 283 lg~~~P~f~H~pli~~~~-g~KLSKR~g~--~~v~~~r~~G~~Peai~n~l~~l 333 (571)
||+..|.+.|.|+|.+.+ |+||||+.++ +.+.+ .|+.|...+...
T Consensus 206 ~~~~~p~~l~~pll~gl~~G~KMSKS~~ns~I~L~D------~p~~i~kKI~ka 253 (394)
T 2dlc_X 206 LGYKKRAHLMNPMVPGLAQGGKMSASDPNSKIDLLE------EPKQVKKKINSA 253 (394)
T ss_dssp GTCCCCEEEEECCCCCCC----------CCSCBTTC------CHHHHHHHHHHS
T ss_pred cCCCCCEEEecccccCCCCCCcCCCCCCCCEEeccC------CHHHHHHHHHHh
Confidence 999999999999999999 9999999876 45544 689999988764
No 18
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.85 E-value=1.4e-21 Score=213.89 Aligned_cols=260 Identities=22% Similarity=0.219 Sum_probs=176.6
Q ss_pred EEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCC----------------cccCcHHHHHHHHHHHHHcCC
Q 008289 58 VRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTD----------------LERSTKESEEAVLQDLSWLGL 119 (571)
Q Consensus 58 ~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD----------------~~R~~~~~~~~i~~~L~wlGl 119 (571)
+--.|+|||.+||||+|++++...+||. ..|..++++.+|| +....+.+.+.+.+++++||+
T Consensus 8 ~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi 87 (500)
T 2d5b_A 8 TTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGI 87 (500)
T ss_dssp ECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3344788999999999999999999995 5999999999999 555678899999999999999
Q ss_pred CCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccc-----cCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHH
Q 008289 120 DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRC-----FCSNEELEKMKEIAKLKQLPPVYTGKWATATDA 192 (571)
Q Consensus 120 ~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C-----fcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~ 192 (571)
.||. .|++|+ +.+.++++.++|.++|++|.+ +|...+-.- .....-+|.|..
T Consensus 88 ~~d~---------~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~--------~~~~l~~g~c~~---- 146 (500)
T 2d5b_A 88 AYDD---------FIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFY--------TEKELVEGLCPI---- 146 (500)
T ss_dssp CCSE---------EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEC--------CTTTSBTTBCTT----
T ss_pred cCCC---------CcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCccc--------CchhccCCcCCC----
Confidence 9996 578888 899999999999999999987 343322000 000001234531
Q ss_pred HHHHHHhcCCCceE------EEecCCCC----------c-eEEEeecccee-eccCCCCCCeEEEe--cC---Cc--c--
Q 008289 193 EVQKELERGTPYTY------RFRVPKGG----------S-LKISDLIRGEV-SWNLDTLGDFVIMR--SN---GQ--P-- 245 (571)
Q Consensus 193 e~~~~~~~g~~~~i------R~k~~~~~----------~-~~~~D~v~G~i-~~~~~~~~D~Vl~R--sd---G~--P-- 245 (571)
.|.|..+ .|+++.-. . ....+..+.++ .+-...+.|++|.| .+ |. |
T Consensus 147 -------~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~ 219 (500)
T 2d5b_A 147 -------HGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWD 219 (500)
T ss_dssp -------TCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTE
T ss_pred -------CCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCC
Confidence 2333222 23322100 0 00000000000 01113468999999 55 64 4
Q ss_pred -------------------ccchhhhHhhhcCCCcEEEeCCCCCCCHHHHH---HHHHHhCCCCCc-EEEeeeeecCCCC
Q 008289 246 -------------------VYNFCVTVDDATMAISHVIRAEEHLPNTLRQA---LIYKALGFSMPY-FAHVSLILAPDRS 302 (571)
Q Consensus 246 -------------------tY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~---~l~~alg~~~P~-f~H~pli~~~~g~ 302 (571)
.|+..+..+++. +.+..+.|.||+. +.+. .+..++|+++|. +.|++++++.+|+
T Consensus 220 ~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~-p~di~~~G~D~~~--fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~ 296 (500)
T 2d5b_A 220 ENHVTFVWFDALLNYVSALDYPEGEAYRTFW-PHAWHLIGKDILK--PHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGR 296 (500)
T ss_dssp EEEEECHHHHHHTHHHHTTTTTTCHHHHHHG-GGEEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSEEEEECCEECTTSS
T ss_pred CCCeeEEccccchhhHHHcCCCCCchHHHcC-CCeEEEEeechhh--hHHHHHHHHHHHcCCCCCcEEEECceEEeCCCC
Confidence 255443344443 5678888999986 4442 344678998886 6888999888999
Q ss_pred cccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHH
Q 008289 303 KLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVE 351 (571)
Q Consensus 303 KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~ 351 (571)
|||||.|+ +++.++.+. |-++|++.|++..+- ...+-.||.+.+.+
T Consensus 297 KMSKS~GN~i~p~d~i~~-~g~DalR~~ll~~~~--~~~d~~fs~~~~~~ 343 (500)
T 2d5b_A 297 KMSKTLGNVVDPFALLEK-YGRDALRYYLLREIP--YGQDTPVSEEALRT 343 (500)
T ss_dssp CCCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHSC--TTSCEECCHHHHHH
T ss_pred cccccCCCCCCHHHHHHh-cCcHHHHHHHHhcCC--cccCCCCCHHHHHH
Confidence 99999998 778888774 889999999987542 23456788877765
No 19
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.83 E-value=2.7e-20 Score=201.83 Aligned_cols=236 Identities=17% Similarity=0.129 Sum_probs=162.2
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc-------------cCcHHHHHHHHHHHHHcCCCCC
Q 008289 61 APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLE-------------RSTKESEEAVLQDLSWLGLDWD 122 (571)
Q Consensus 61 APSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDTD~~-------------R~~~~~~~~i~~~L~wlGl~~D 122 (571)
.|+|+|++||||+|++++...++|. ++..|+..++|+|.+ ...+.+++.+.+++++||+.+|
T Consensus 32 GPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI~~d 111 (462)
T 3tqo_A 32 GMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSP 111 (462)
T ss_dssp CCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 5678899999999999988777774 556899999999984 2246889999999999999987
Q ss_pred CCCCCCCCccceeccccHHHHHHHHHHHHHcCCccc------ccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHH
Q 008289 123 EGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR------CFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQK 196 (571)
Q Consensus 123 egp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~------Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~ 196 (571)
.- -| +.|++.+...+++++|+++|+||. +||.+.. +.|..-+ +.+.++
T Consensus 112 ~~-------~p-raTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~--------------~~yg~Ls-~~~~~~--- 165 (462)
T 3tqo_A 112 DQ-------EP-RATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF--------------KDYGKLS-HRHLDE--- 165 (462)
T ss_dssp SB-------CC-BGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC--------------TTTTTTT-TCSCC----
T ss_pred cc-------cc-ChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc--------------ccccccc-CCChHH---
Confidence 52 13 789999999999999999999993 6775531 2343222 222222
Q ss_pred HHhcCCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEec-------------CCccccchhhhHhh-hcCCCcE
Q 008289 197 ELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTVDD-ATMAISH 262 (571)
Q Consensus 197 ~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rs-------------dG~PtY~fA~vVDD-~~m~ItH 262 (571)
+..|. |..+ .....+..||+|||. .|.|.||+.|++-. ...|-+.
T Consensus 166 -~~~g~----r~~~----------------~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~ 224 (462)
T 3tqo_A 166 -LQAGA----RVEV----------------SDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPF 224 (462)
T ss_dssp --------------------------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSE
T ss_pred -hhccC----cccc----------------ccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCe
Confidence 12232 1110 111235579999996 57899999997653 3444454
Q ss_pred EE--eCCCCCCCHHHHH---HHHH-HhCCCCCcEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCC
Q 008289 263 VI--RAEEHLPNTLRQA---LIYK-ALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGW 335 (571)
Q Consensus 263 VI--RG~Dhl~ntp~q~---~l~~-alg~~~P~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~ 335 (571)
.| -|.|++- |.|. +..+ +.|.+.+.|+.+..+++.+|+||||+.|+ +++.++.+. |.|++++-|+..-.+
T Consensus 225 dih~gG~Dl~F--pHheneiaqs~a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~-~g~dalR~~lls~~y 301 (462)
T 3tqo_A 225 DIHGGGLDLKF--PHHENEIAQSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKE-SDVEVLRYFLLSGHY 301 (462)
T ss_dssp EEEEEEGGGTT--THHHHHHHHHHHHHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHHSCT
T ss_pred EEEcccccccc--HHHHhHHHHHHHHcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhh-cChHHhhhhhccCCC
Confidence 45 5888775 3332 2223 34765566665555567899999999998 899998875 999999999987544
Q ss_pred CCCCCcccCCHHHH
Q 008289 336 GDGTENEFFTLKQL 349 (571)
Q Consensus 336 ~~~~~~e~~s~~el 349 (571)
. ..-.||.+.+
T Consensus 302 r---~~l~fs~~~l 312 (462)
T 3tqo_A 302 R---NPLSYSKENL 312 (462)
T ss_dssp T---SCEEECHHHH
T ss_pred C---CCcCcCHHHH
Confidence 2 2234555544
No 20
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.80 E-value=3.5e-19 Score=191.27 Aligned_cols=244 Identities=20% Similarity=0.158 Sum_probs=148.9
Q ss_pred EeCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc-------------cCcHHHHHHHHHHHHHcCCC
Q 008289 59 RFAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLE-------------RSTKESEEAVLQDLSWLGLD 120 (571)
Q Consensus 59 RFAPSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDTD~~-------------R~~~~~~~~i~~~L~wlGl~ 120 (571)
--.|+|+|++||||+|++++...+||. ++..|+..++|.|.+ ...+.+.+.+.+++++||+.
T Consensus 44 ~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~ 123 (414)
T 3c8z_A 44 VCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVL 123 (414)
T ss_dssp ECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 335777799999999999999888887 778899999999964 12467889999999999998
Q ss_pred -CCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCC----CCCCC--CcCCCCCHHH
Q 008289 121 -WDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQL----PPVYT--GKWATATDAE 193 (571)
Q Consensus 121 -~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~----~~~Y~--g~cr~l~~~e 193 (571)
+|.- ++.|++.+.++++.++|+++|++|.+.|+ ..+. -..|. |...+...++
T Consensus 124 ~~d~~---------~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~------------~e~~~~f~~~~~~~~g~l~~~~~~~ 182 (414)
T 3c8z_A 124 PPHDY---------VAATDAIAEVVEMVEKLLASGAAYIVEDA------------EYPDVYFRADATAQFGYESGYDRDT 182 (414)
T ss_dssp CCSEE---------EEGGGCHHHHHHHHHHHHHHTSEEECSCS------------SCCCEEECTTSSTTTTTTTCCCHHH
T ss_pred CCcce---------ecccchHHHHHHHHHHHHHCCCEEeccCC------------cCCCEEEEchhhhhhHhhcCCCHHH
Confidence 8852 46788999999999999999999987654 0110 11121 1111223444
Q ss_pred HHHHHhc--CCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEec-------------CCccccchhhhH--hhh
Q 008289 194 VQKELER--GTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS-------------NGQPVYNFCVTV--DDA 256 (571)
Q Consensus 194 ~~~~~~~--g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rs-------------dG~PtY~fA~vV--DD~ 256 (571)
+...+.. +..- ........||++||. .|.|.||..|.. ..+
T Consensus 183 ~~~~~~~~~~~~~----------------------~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~ 240 (414)
T 3c8z_A 183 MLTLFAERGGDPD----------------------RPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTR 240 (414)
T ss_dssp HHHHHHHTTCCTT----------------------CTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHH
T ss_pred HHHHHhhcccccc----------------------ccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHh
Confidence 4433211 1100 000112345566652 256888887642 232
Q ss_pred c-CCCcEEEeCCC----CCCCHHHHHHHHHHhCCCCC--cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHH
Q 008289 257 T-MAISHVIRAEE----HLPNTLRQALIYKALGFSMP--YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVN 328 (571)
Q Consensus 257 ~-m~ItHVIRG~D----hl~ntp~q~~l~~alg~~~P--~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n 328 (571)
+ ..++-.+-|.| |+.+.+.|... +.|.++| .+.|..++. .+|+||||+.|+ +++.++.++||.|++++-
T Consensus 241 ~g~~~di~~~G~D~~~~H~~~~~a~~~a--~~g~~~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~ 317 (414)
T 3c8z_A 241 IGTGLDIQGGGSDLIFPHHEYSAAHAES--VTGERRFARHYVHTGMIG-WDGHKMSKSRGNLVLVSQLRAQGVDPSAIRL 317 (414)
T ss_dssp TCSCEEEEEEEGGGTTTHHHHHHHHHHH--HHCCSCSEEEEEEECCBC--------------CBHHHHHHTTCCHHHHHH
T ss_pred cCCCceEEEeccccccHHHHHHHHHHHH--hcCCCCcCeEEEEcCEEe-cCCeEcccccCCcCCHHHHhhccCCcchhee
Confidence 3 12332233677 44455444322 2487444 356777764 489999999998 899999999999999999
Q ss_pred HHHHhCCCCCCCcccCCHHHHHH
Q 008289 329 YLALLGWGDGTENEFFTLKQLVE 351 (571)
Q Consensus 329 ~l~~lG~~~~~~~e~~s~~eli~ 351 (571)
||+. + +....-.||.+.+.+
T Consensus 318 ~ll~-~--~~~~d~~fs~~~l~~ 337 (414)
T 3c8z_A 318 GLFS-G--HYREDRFWSNEVLDE 337 (414)
T ss_dssp HHHT-S--CTTSCBCCCHHHHHH
T ss_pred EEEe-c--CcCCCCCcCHHHHHH
Confidence 9986 2 223344566665543
No 21
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.80 E-value=4.1e-19 Score=193.03 Aligned_cols=116 Identities=21% Similarity=0.302 Sum_probs=94.6
Q ss_pred CCeEEEecCCccccc---hhhhHhhhcCCCcEEE--eCCCCCCCHHHHHHHHHHhCCCCCcEEEee--ee-ecCCCC--c
Q 008289 234 GDFVIMRSNGQPVYN---FCVTVDDATMAISHVI--RAEEHLPNTLRQALIYKALGFSMPYFAHVS--LI-LAPDRS--K 303 (571)
Q Consensus 234 ~D~Vl~RsdG~PtY~---fA~vVDD~~m~ItHVI--RG~Dhl~ntp~q~~l~~alg~~~P~f~H~p--li-~~~~g~--K 303 (571)
.|.||+||||.|||. +|.++|+..++++++| +|.||..+.+++..+.+++|+++|.+.|++ ++ ++.+|+ |
T Consensus 206 ~~~vl~ksDG~~~Y~t~DiA~~~~r~~~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~K 285 (464)
T 3fnr_A 206 KDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYK 285 (464)
T ss_dssp SCEEEECTTSCBCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECC
T ss_pred CceEEEeCCCceehhhHHHHHHHHHHHcCCCeEEEEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccC
Confidence 479999999999998 8899999999999995 899999999999999999999988887765 76 556775 9
Q ss_pred ccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcCccccccCCCcccHHHHHHhh
Q 008289 304 LSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFTIERVNKSGAIFDSTKLRWMN 374 (571)
Q Consensus 304 LSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~~~~~~~s~~~fd~~kL~wlN 374 (571)
||||.|+ +++.++.++ +| .+++++|.++....++..||++++.+.+
T Consensus 286 MSKr~Gn~v~l~dll~~-------------~g------------~dalRy~~l~~~~~~d~~Fd~~~~~~~~ 332 (464)
T 3fnr_A 286 MSKRAGNFILMSDVVDE-------------IG------------SDALRYIFLSKKCDTHLEFDISDLQKED 332 (464)
T ss_dssp C---CCSSCBHHHHHHH-------------HC------------HHHHHHHTTSSCTTSCEEEEGGGGGCCS
T ss_pred CcCcCCCCCCHHHHHhh-------------cc------------HHHHHHHHHhcCCCCCCccCHHHHHHHh
Confidence 9999997 588877553 33 2677888888777888899999987753
No 22
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=99.78 E-value=4.4e-18 Score=180.25 Aligned_cols=244 Identities=14% Similarity=0.064 Sum_probs=165.8
Q ss_pred CceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc-------cCcHHHHHH-HHHHHHHcCCCC
Q 008289 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE-------RSTKESEEA-VLQDLSWLGLDW 121 (571)
Q Consensus 54 ~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD----TD~~-------R~~~~~~~~-i~~~L~wlGl~~ 121 (571)
..|.++|. |||.|||||..+|+.+|.+.+ .|+++++.|.| |+.. |+...+.+. |...|.|+|++|
T Consensus 36 ~~vy~G~~--PTG~lHlG~~~~~l~~~~~~q-~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp 112 (372)
T 1n3l_A 36 LKIYWGTA--TTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPL 112 (372)
T ss_dssp CEEEEEEC--CSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CEEEeCcC--CCCcccHHHHHHHHHHHHHHH-CCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 36889999 679999999999999999997 79999999999 8532 334555665 555679999999
Q ss_pred CCCCCCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcC
Q 008289 122 DEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERG 201 (571)
Q Consensus 122 Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g 201 (571)
+.. .+|.||+.. .+.+++..++. |.|+||..+++.. + .
T Consensus 113 ~k~-------~i~~qS~~~-~~~~~~~~~~~----l~~~~t~~~~~~~-------~--~--------------------- 150 (372)
T 1n3l_A 113 EKL-------KFIKGTDYQ-LSKEYTLDVYR----LSSVVTQHDSKKA-------G--A--------------------- 150 (372)
T ss_dssp TTE-------EEEEGGGTT-TSHHHHHHHHH----HHTTSCHHHHHHH-------T--T---------------------
T ss_pred hhc-------EEEECCeec-ccHHHHHHHHH----HHhhCcHHHHHhc-------h--h---------------------
Confidence 864 489999985 45566666665 8899998876531 0 0
Q ss_pred CCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHH
Q 008289 202 TPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYK 281 (571)
Q Consensus 202 ~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~ 281 (571)
+ +.|+. . ++ +-|..+|..--+.|-...+.+||++|+|+..|+..++.|++
T Consensus 151 -~-v~~~~----~-----~~-------------------~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~~~~~l~rdl~~ 200 (372)
T 1n3l_A 151 -E-VVKQV----E-----HP-------------------LLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLP 200 (372)
T ss_dssp -T-TSCCC----S-----SC-------------------CHHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGG
T ss_pred -h-hhccc----C-----CC-------------------cceeeecchHhhccHHHhcCCEEEcChhHHHHHHHHHHHHH
Confidence 0 00000 0 00 12456777777778888999999999999999999999999
Q ss_pred HhCCCCCcEEEeeeeecCCCCcccccCCC--CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHh-------
Q 008289 282 ALGFSMPYFAHVSLILAPDRSKLSKRHGA--TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEK------- 352 (571)
Q Consensus 282 alg~~~P~f~H~pli~~~~g~KLSKR~g~--~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~------- 352 (571)
.+|+..|...|.|+|.+.+|+||||+.++ +.+.+ .|+.|..++.. -.+++...+.-..-++++.
T Consensus 201 r~~~~~p~~l~~pll~gldG~KMSKS~~ns~I~L~d------~p~~i~kKi~~-A~td~~~~~d~~v~~~lk~~l~~~~~ 273 (372)
T 1n3l_A 201 ALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLD------RKEDVKKKLKK-AFCEPGNVENNGVLSFIKHVLFPLKS 273 (372)
T ss_dssp GGTCCCCEEEEECCCCCSSCC-------CCSCBTTC------CHHHHHHHHHT-CCCCTTCCSSCHHHHHHHHTTGGGTT
T ss_pred HcCCCCCEEEecCccCCCCcccccCCCCCCeEeccC------CHHHHHHHHHH-ccCCCCCCCcccHHHHHHHhhhhhhc
Confidence 99999999999999999999999999876 45544 59999999975 3333322222234444544
Q ss_pred -cCccccccCCCcccHHHHHHhhHHHHh
Q 008289 353 -FTIERVNKSGAIFDSTKLRWMNGQHLR 379 (571)
Q Consensus 353 -F~~~~~~~s~~~fd~~kL~wlN~~~ir 379 (571)
|++++-.++....+.+.+..+-.+|-.
T Consensus 274 ~f~~er~~~~g~~~~~~~i~el~~~~~~ 301 (372)
T 1n3l_A 274 EFVILRDEKWGGNKTYTAYVDLEKDFAA 301 (372)
T ss_dssp CEEECCCGGGTCCEEESSHHHHHHHHHT
T ss_pred ceeecccccccCCCCHHHHHHHHHHHhc
Confidence 655433333333333444444445543
No 23
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.72 E-value=1.9e-17 Score=185.44 Aligned_cols=246 Identities=17% Similarity=0.217 Sum_probs=178.5
Q ss_pred CCceEEEe-CCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEE---EecC-------------------------CC---
Q 008289 53 DGQVRVRF-APSPTGNLHVGGARTALFNYLFARS--KGGKFVL---RIED-------------------------TD--- 98 (571)
Q Consensus 53 ~~~vr~RF-APSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiL---RieD-------------------------TD--- 98 (571)
+++|++=| .|.|||+|||||+|++++-..+||- ..|.=+. -|.| +|
T Consensus 142 ~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~ 221 (607)
T 1f7u_A 142 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLF 221 (607)
T ss_dssp CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHH
T ss_pred CCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHH
Confidence 45677777 6899999999999999987777774 3344444 4455 11
Q ss_pred --------------------------------------c------ccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccce
Q 008289 99 --------------------------------------L------ERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (571)
Q Consensus 99 --------------------------------------~------~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy 134 (571)
+ +...+.+.+.+.++++.||+.+|.- +
T Consensus 222 ~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~---------~ 292 (607)
T 1f7u_A 222 DVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVY---------S 292 (607)
T ss_dssp HHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEE---------E
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceee---------c
Confidence 1 1124567788999999999999863 3
Q ss_pred eccccH-HHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCC
Q 008289 135 RQSERN-SLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKG 213 (571)
Q Consensus 135 ~QSer~-~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~ 213 (571)
.-|+.. +...++++.|.++|.+|.- +|. +=|++.+
T Consensus 293 ~ES~~~~~~~~~vi~~L~~kG~~ye~----------------------------------------dGa---~~~~~~~- 328 (607)
T 1f7u_A 293 GESQVSKESMLKAIDLFKEKGLTHED----------------------------------------KGA---VLIDLTK- 328 (607)
T ss_dssp EGGGCCHHHHHHHHHHHHHTTCEEEE----------------------------------------TTE---EEEEGGG-
T ss_pred CcchhhhhHHHHHHHHHHhCCCEEEE----------------------------------------CCc---EEEEecc-
Confidence 556655 6678999999999999941 121 1122221
Q ss_pred CceEEEeeccceeeccCCCCCCeEEEecCCccccch---hhhHhhh-cCCCcEEE--eCCCCCCCHHHHHHHHHHhCCCC
Q 008289 214 GSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNF---CVTVDDA-TMAISHVI--RAEEHLPNTLRQALIYKALGFSM 287 (571)
Q Consensus 214 ~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~f---A~vVDD~-~m~ItHVI--RG~Dhl~ntp~q~~l~~alg~~~ 287 (571)
.|+ .+++.|+.|+||.|||.. |.+++.+ .++.+++| .|.||....++...+.+++|++.
T Consensus 329 ---------~g~------~~d~~v~~KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~ 393 (607)
T 1f7u_A 329 ---------FNK------KLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEW 393 (607)
T ss_dssp ---------TCT------TTCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGG
T ss_pred ---------cCC------CCCceeEeccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCCc
Confidence 021 334689999999999964 7788887 57999999 89999998888889999999976
Q ss_pred C-cEEEeee-eecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCC---CCcccCCHHH-----HHHhcCcc
Q 008289 288 P-YFAHVSL-ILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDG---TENEFFTLKQ-----LVEKFTIE 356 (571)
Q Consensus 288 P-~f~H~pl-i~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~---~~~e~~s~~e-----li~~F~~~ 356 (571)
+ .+.|+++ +++ |||||.|+ ++++++.+..+. .| .+ +.. . ++. +..++.+..+ ++++|+++
T Consensus 394 ~~~~~Hv~fg~v~----kMSkR~G~~v~L~dLlde~~~-~a-~~-~~~-~-~~~~~~~~~e~~~~a~~vgi~avry~~Ls 464 (607)
T 1f7u_A 394 AKDLQHVNFGMVQ----GMSTRKGTVVFLDNILEETKE-KM-HE-VMK-K-NENKYAQIEHPEEVADLVGISAVMIQDMQ 464 (607)
T ss_dssp GGGEEEECCCCEE----SCCGGGTCCCBHHHHHHHHHH-HH-HH-HHH-T-CHHHHTTCSCHHHHHHHHHHHHHHHHHHS
T ss_pred CcEEEEecccccc----cccCCCCCcccHHHHHHHHHH-HH-HH-HHH-h-CcccccchhhHHHHHHHHHHHHHHHHHhc
Confidence 6 5889988 443 69999998 689999887544 55 22 333 1 111 1234555555 68899999
Q ss_pred ccccCCCcccHHHHHHhhH
Q 008289 357 RVNKSGAIFDSTKLRWMNG 375 (571)
Q Consensus 357 ~~~~s~~~fd~~kL~wlN~ 375 (571)
....++..||++++.|+|+
T Consensus 465 ~~~~s~~~Fd~d~~~~~~g 483 (607)
T 1f7u_A 465 GKRINNYEFKWERMLSFEG 483 (607)
T ss_dssp SCTTCCEECCHHHHHCCSS
T ss_pred cCCCCCcccCHHHHHHHhc
Confidence 9999999999999999986
No 24
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.71 E-value=3.7e-17 Score=178.30 Aligned_cols=237 Identities=18% Similarity=0.218 Sum_probs=144.2
Q ss_pred CCCCCcCchhhHHHHHHHHHHHH-----HcCCeEEEEecCC----------Ccc---c----------CcHHHHHHHHHH
Q 008289 62 PSPTGNLHVGGARTALFNYLFAR-----SKGGKFVLRIEDT----------DLE---R----------STKESEEAVLQD 113 (571)
Q Consensus 62 PSPtG~LHiG~~rtAl~n~l~Ar-----~~~G~fiLRieDT----------D~~---R----------~~~~~~~~i~~~ 113 (571)
|+|+|++||||||++++-..++| .+...|+..|+|+ |.+ | ..+.+++.+.++
T Consensus 50 PTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~~f~~d 129 (501)
T 3sp1_A 50 PTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFND 129 (501)
T ss_dssp CBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHHHHHHH
T ss_pred CcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44559999999999987766665 4667899999998 443 1 146889999999
Q ss_pred HHHcCCCCCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhCCCCCCCCCcCCC
Q 008289 114 LSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLPPVYTGKWAT 188 (571)
Q Consensus 114 L~wlGl~~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~ 188 (571)
++.||+.+|. +.| +.+++.+..+++.++|+++|+||. .||... .+.| |+
T Consensus 130 ~~~Lgi~~d~-------~~~-~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~--------------f~~y-G~--- 183 (501)
T 3sp1_A 130 CRKLNIVYPD-------KVL-VASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC--------------FKSY-GE--- 183 (501)
T ss_dssp HHHTTCCCCS-------EEE-EGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG--------------CTTT-TT---
T ss_pred HHHcCCCCCC-------ccc-CcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc--------------cCCc-cc---
Confidence 9999999875 234 688999999999999999999995 566443 1234 22
Q ss_pred CCHHHHHHHHhcCCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEec----------------CCccccchhhh
Q 008289 189 ATDAEVQKELERGTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRS----------------NGQPVYNFCVT 252 (571)
Q Consensus 189 l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~Rs----------------dG~PtY~fA~v 252 (571)
++...+.+.+..|. |. . +.....+..||++||. .|.|.||..|.
T Consensus 184 ls~~~~~~~~~~g~----r~--------~--------~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcs 243 (501)
T 3sp1_A 184 MAGIDLIDKDMTLP----RV--------D--------VDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECA 243 (501)
T ss_dssp TTC-------------------------------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHH
T ss_pred cCCCChhhhhccCC----cc--------C--------cccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHH
Confidence 22221101122332 10 0 0111235679999986 25799999886
Q ss_pred H--hhhcC-CCcEEEeCCCCCCCHHHHH---HHHHHh-CCCCC-cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCH
Q 008289 253 V--DDATM-AISHVIRAEEHLPNTLRQA---LIYKAL-GFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLP 323 (571)
Q Consensus 253 V--DD~~m-~ItHVIRG~Dhl~ntp~q~---~l~~al-g~~~P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~P 323 (571)
+ ..++. .++--+=|.|++- |.|. +..+++ |-+.+ .+.|..++. .+|+||||+.|+ +++.++.+.||.|
T Consensus 244 am~~~~lg~~~DIH~gG~DLif--pHheneiAqs~a~~g~~~~~~w~H~g~v~-~~G~KMSKSlGN~it~~dll~~gyg~ 320 (501)
T 3sp1_A 244 AMNLEYFKDALDIHLGGVDHIG--VHHINEIAIAECFLNKKWCDVFVHGEFLI-MDYNKMSKSRGNFITVKDLEDQNFSP 320 (501)
T ss_dssp HHHHHHTTTCCCEEEEEGGGTT--THHHHHHHHHHHHHTSCCCSEEEEECCEE-CC----------CCCHHHHHHTTCCH
T ss_pred HHHHHHcCCCceEEeecccccc--chHHHHHHHHHHccCCCCCeEEEEeeeEe-eCCeEccccCCCcCCHHHHHhcCCCH
Confidence 5 24442 2343334888874 4432 222333 54434 467888864 699999999998 8999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcccCCHHHHH
Q 008289 324 QAMVNYLALLGWGDGTENEFFTLKQLV 350 (571)
Q Consensus 324 eai~n~l~~lG~~~~~~~e~~s~~eli 350 (571)
++++-||+.-.+. ..-.||.+.+.
T Consensus 321 d~lR~~lls~~yr---~~l~fs~~~l~ 344 (501)
T 3sp1_A 321 LDFRYLCLTSHYR---NQLKFSLDNLQ 344 (501)
T ss_dssp HHHHHHHHTSCTT---SCEECCHHHHH
T ss_pred HHHHHHHHhccCC---CCCccCHHHHH
Confidence 9999999765432 23445555443
No 25
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=99.71 E-value=3.7e-17 Score=170.15 Aligned_cols=217 Identities=15% Similarity=0.163 Sum_probs=163.3
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC-------CCcccCcHHHHHHHHHHHHHcCCCCCCCCCC
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED-------TDLERSTKESEEAVLQDLSWLGLDWDEGPGV 127 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD-------TD~~R~~~~~~~~i~~~L~wlGl~~Degp~~ 127 (571)
.+-+-|. |||.|||||+ .++.+|...+..|+++++.|-| ++......++.+.+..++.++|++|+.-
T Consensus 34 ~vy~G~~--PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~--- 107 (323)
T 2cyb_A 34 RAYVGYE--PSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRA--- 107 (323)
T ss_dssp EEEEEEC--CCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTC---
T ss_pred EEEECcC--CCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccce---
Confidence 4667775 6799999997 6899999999999999999966 3233457888899999999999999863
Q ss_pred CCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEE
Q 008289 128 GGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYR 207 (571)
Q Consensus 128 ~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR 207 (571)
..++||+.... .++++.+ ..|.|.||..++.... .|. |.
T Consensus 108 ----~i~~qS~~~~~-~~~~~~~----~~l~~~~t~~~l~~~~----------~~~-----------------~~----- 146 (323)
T 2cyb_A 108 ----KFVLGSEYQLS-RDYVLDV----LKMARITTLNRARRSM----------DEV-----------------SR----- 146 (323)
T ss_dssp ----EEEEGGGTTTS-HHHHHHH----HHHHHHSBHHHHHHHT----------TTT-----------------CS-----
T ss_pred ----EEEEcchhccc-hHHHHHH----HHHhCccCHHHHhccc----------hhh-----------------cc-----
Confidence 26899998632 2333333 3488999999886421 110 00
Q ss_pred EecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCC
Q 008289 208 FRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSM 287 (571)
Q Consensus 208 ~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~ 287 (571)
. .++ + +.|..+|.+..+.|+...+++||++|+|...++..+..|.+.+|...
T Consensus 147 ----~--------------------~~~-~---~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~~~~~ 198 (323)
T 2cyb_A 147 ----R--------------------KED-P---MVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYSS 198 (323)
T ss_dssp ----C--------------------SSS-C---BTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCC
T ss_pred ----c--------------------cCC-C---CchhhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhcCCCC
Confidence 0 001 0 45678999999999999999999999999999999999999999999
Q ss_pred CcEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhc
Q 008289 288 PYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKF 353 (571)
Q Consensus 288 P~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F 353 (571)
|...|.|+|.+.+|+||||+.|+ +.+.+ .|++|...+...- +++...+.-..-++.+.|
T Consensus 199 p~~l~~pll~~l~G~KMSKS~~n~I~l~d------~p~~i~~Ki~~a~-td~~~~~~~~~~~~~~~~ 258 (323)
T 2cyb_A 199 PVCLHTPILVGLDGQKMSSSKGNYISVRD------PPEEVERKIRKAY-CPAGVVEENPILDIAKYH 258 (323)
T ss_dssp CEEEEECCCBCTTSSBCCTTTTCSCBTTC------CHHHHHHHHHTSC-CCTTCCTTCHHHHHHHHT
T ss_pred ceEEecCcccCCCCCcccCCcCceeCCCC------CHHHHHHHHHhcC-CCCCCCCcChHHHHHHHH
Confidence 99999999999999999999765 55554 6999999997643 332222222344455554
No 26
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.66 E-value=2.3e-16 Score=175.25 Aligned_cols=275 Identities=16% Similarity=0.223 Sum_probs=163.9
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHH--HcCCeEEEEecCCC----------------cccCcHHHHHHHHHHHHHc
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTD----------------LERSTKESEEAVLQDLSWL 117 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar--~~~G~fiLRieDTD----------------~~R~~~~~~~~i~~~L~wl 117 (571)
+++--.|+|||.+||||+|++++...+|| ...|.-++.+-.+| ++...+.+.+.+.++|++|
T Consensus 21 ~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 100 (560)
T 3h99_A 21 LVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGF 100 (560)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHc
Confidence 45555699999999999999999999999 45566555544444 4455788899999999999
Q ss_pred CCCCCCCCCCCCCccceecc--ccHHHHHHHHHHHHHcCCccc-------cc-----CCHHHHHHHHHHHHhCCCCCCC-
Q 008289 118 GLDWDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR-------CF-----CSNEELEKMKEIAKLKQLPPVY- 182 (571)
Q Consensus 118 Gl~~Degp~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~-------Cf-----cs~eel~~~r~~~~~~~~~~~Y- 182 (571)
|+.||. .|+.+ ++.+..+++.++|.++|.+|. |. ++..++ .|..|.+
T Consensus 101 gi~~d~---------~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v---------~g~cp~c~ 162 (560)
T 3h99_A 101 NISYDN---------YHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFV---------KGTCPKCK 162 (560)
T ss_dssp TCCCSE---------EEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGE---------EEECTTTC
T ss_pred CCCCCC---------ceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhc---------CCCCCCCC
Confidence 999996 34454 456667788999999999993 22 221111 1111111
Q ss_pred -----CCc---CCC-CCHHHHHH--HHhcCCCceE------EEecCCCCc--------eEEEeecccee-eccCCCCCCe
Q 008289 183 -----TGK---WAT-ATDAEVQK--ELERGTPYTY------RFRVPKGGS--------LKISDLIRGEV-SWNLDTLGDF 236 (571)
Q Consensus 183 -----~g~---cr~-l~~~e~~~--~~~~g~~~~i------R~k~~~~~~--------~~~~D~v~G~i-~~~~~~~~D~ 236 (571)
-.. |.. +.+.+... ....|.+.++ .|+++.-.. ..+.+-+++++ .+-...+.|+
T Consensus 163 ~~~~~gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~ 242 (560)
T 3h99_A 163 SPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQW 242 (560)
T ss_dssp CSSEETTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCE
T ss_pred CcccccchhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCC
Confidence 111 221 11111100 0012333222 233321000 00000011110 0001258899
Q ss_pred EEEecC---Cccc--------c-------chhhhH------------------hhhcCCCcEEEeCCCCCC-CHHHHHHH
Q 008289 237 VIMRSN---GQPV--------Y-------NFCVTV------------------DDATMAISHVIRAEEHLP-NTLRQALI 279 (571)
Q Consensus 237 Vl~Rsd---G~Pt--------Y-------~fA~vV------------------DD~~m~ItHVIRG~Dhl~-ntp~q~~l 279 (571)
.|-|.. |.|. | .+..++ .|....+.||+ |.|++. .+-....+
T Consensus 243 ~IsR~~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~-G~D~~~fh~~~~~a~ 321 (560)
T 3h99_A 243 DISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFI-GKDIVYFLSLFWPAM 321 (560)
T ss_dssp ECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEE-EGGGHHHHHTHHHHH
T ss_pred CccccCCcCCeeCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEe-ccccchhHHHHHHHH
Confidence 999998 6532 1 111111 22334456777 999884 12233456
Q ss_pred HHHhCCCCCc-EEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHh
Q 008289 280 YKALGFSMPY-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEK 352 (571)
Q Consensus 280 ~~alg~~~P~-f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~ 352 (571)
+.++|++.|. ...+++++. +|+|||||.|+ ++..++.+. |-++|++-||+..+-. ...+-.|+.+.+++.
T Consensus 322 l~~~g~~~p~~v~~hg~v~~-~G~KMSKS~GNvv~p~d~i~~-~GaDalR~~ll~~~~~-~~~d~~f~~~~~~~~ 393 (560)
T 3h99_A 322 LEGSNFRKPSNLFVHGYVTV-NGAKMSKSRGTFIKASTWLNH-FDADSLRYYYTAKLSS-RIDDIDLNLEDFVQR 393 (560)
T ss_dssp HHHTTBCCCSEEEEECCEEE-TTEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHHHCCS-SCCCEEECHHHHHHH
T ss_pred HHhCCCCCCcEEEEEeEEEe-CCeeccccCCCcCCHHHHHHH-cCcHHHHHHHHHhCCC-CCCCCCcCHHHHHHH
Confidence 7889998884 333466665 89999999998 789998887 8999999999876532 113456888877653
No 27
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.66 E-value=8.3e-17 Score=177.93 Aligned_cols=269 Identities=17% Similarity=0.191 Sum_probs=150.4
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCc-------------ccCcHHHHHHHHHHHHHc
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDL-------------ERSTKESEEAVLQDLSWL 117 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDTD~-------------~R~~~~~~~~i~~~L~wl 117 (571)
+++.-.|+|||++||||+|++++...+||. ++..|+..++|.+. ....+.+.+.+.++|++|
T Consensus 28 ~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 107 (536)
T 4dlp_A 28 YITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVL 107 (536)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 566677899999999999999999888884 44557778888654 344678899999999999
Q ss_pred CCCCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccc-----cCCHHHHHHHHHHHHhCCCCCCCCC-cCCCC
Q 008289 118 GLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRC-----FCSNEELEKMKEIAKLKQLPPVYTG-KWATA 189 (571)
Q Consensus 118 Gl~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C-----fcs~eel~~~r~~~~~~~~~~~Y~g-~cr~l 189 (571)
|+.+|. -++.++ +.+..+++.++|.++|++|.+ ||+.++-.- .+.....+. +| .|.
T Consensus 108 gi~~d~---------~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l-~~~~~~~~~----~g~~c~-- 171 (536)
T 4dlp_A 108 NSSNDD---------YIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYY-GEEETEVRA----DGVRYG-- 171 (536)
T ss_dssp TCCCSE---------EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEE-CGGGCEECT----TSCEEC--
T ss_pred CCCCCc---------ceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCccc-CHHHhhcCC----CCCccc--
Confidence 999995 245554 889999999999999999986 665543100 000000010 12 121
Q ss_pred CHHHHHHHHhcCCCceEE------EecCCCCc--eE---------EEeecccee-eccCCCCCCeEEEecC---C-----
Q 008289 190 TDAEVQKELERGTPYTYR------FRVPKGGS--LK---------ISDLIRGEV-SWNLDTLGDFVIMRSN---G----- 243 (571)
Q Consensus 190 ~~~e~~~~~~~g~~~~iR------~k~~~~~~--~~---------~~D~v~G~i-~~~~~~~~D~Vl~Rsd---G----- 243 (571)
..|.+..+| |+++.-.. .. ..+..+.++ .+-...+.|++|-|++ |
T Consensus 172 ---------~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~ 242 (536)
T 4dlp_A 172 ---------PQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPG 242 (536)
T ss_dssp ---------TTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTT
T ss_pred ---------CCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCC
Confidence 123333332 22211000 00 000000000 1111367899999974 1
Q ss_pred ccccchhhhHh----------------hhcC--CCcEEEeCCCCCCC-HHHHHHHHHHhCCCCCcE-EEeeeeecCCCCc
Q 008289 244 QPVYNFCVTVD----------------DATM--AISHVIRAEEHLPN-TLRQALIYKALGFSMPYF-AHVSLILAPDRSK 303 (571)
Q Consensus 244 ~PtY~fA~vVD----------------D~~m--~ItHVIRG~Dhl~n-tp~q~~l~~alg~~~P~f-~H~pli~~~~g~K 303 (571)
.|..-+-+-+| +... ..+-.+-|.|++.. +..+..+..++|+++|.- ..+++++. +|+|
T Consensus 243 ~~~~v~yvWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~hg~v~~-~G~K 321 (536)
T 4dlp_A 243 DEKHVMYVWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLFN-RGEK 321 (536)
T ss_dssp CTTSEECHHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCEEC-----
T ss_pred CCCCceEEeeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEEEeeeeEee-CCce
Confidence 11111111111 1110 12233448998741 112334556889887753 34477654 9999
Q ss_pred ccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhc
Q 008289 304 LSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKF 353 (571)
Q Consensus 304 LSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F 353 (571)
||||.|+ ++..++.+. |-++|++.||+..+- ...+-.|+.+.+++..
T Consensus 322 MSKS~GNvi~p~d~i~~-~GaDalR~~ll~~~~--~~~d~~fs~~~~~~~~ 369 (536)
T 4dlp_A 322 MSKSVGNVIDPFELVER-YGLDQLRYFLMREVP--FGQDGSYSHEAIVNRT 369 (536)
T ss_dssp --------CCHHHHHHH-HCHHHHHHHHHHHSC--TTSCEECCHHHHHHHH
T ss_pred ecccCCCCCCHHHHHHH-cCcHHHHHHHHhcCC--CCCCCCCCHHHHHHHH
Confidence 9999998 677777764 779999999987532 2345678888876643
No 28
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.58 E-value=4.2e-15 Score=163.65 Aligned_cols=259 Identities=18% Similarity=0.243 Sum_probs=162.8
Q ss_pred EEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCC----------------cccCcHHHHHHHHHHHHHcCC
Q 008289 58 VRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTD----------------LERSTKESEEAVLQDLSWLGL 119 (571)
Q Consensus 58 ~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD----------------~~R~~~~~~~~i~~~L~wlGl 119 (571)
+=-.|.|||.+||||+|++++...+||. ..|.-++++.++| +....+.+.+.+.+++++||+
T Consensus 17 ~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi 96 (524)
T 2x1l_A 17 TTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNI 96 (524)
T ss_dssp EECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred eeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 4445899999999999999999999995 6899999999998 223356789999999999999
Q ss_pred CCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCcccc-----cCCHHHHH-HHHHHHHhCCCCCCCCC-cCCCCC
Q 008289 120 DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYRC-----FCSNEELE-KMKEIAKLKQLPPVYTG-KWATAT 190 (571)
Q Consensus 120 ~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~C-----fcs~eel~-~~r~~~~~~~~~~~Y~g-~cr~l~ 190 (571)
.+|. .++.|+ +.+..+++.++|.++|.+|.. ||...+-. ..+ ....|. +| .|--
T Consensus 97 ~~d~---------~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~--ev~~g~----~G~~c~~-- 159 (524)
T 2x1l_A 97 SFDR---------FIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTEN--ETTEQP----DGTRIAT-- 159 (524)
T ss_dssp CCSE---------EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGG--GEEECT----TSCEEET--
T ss_pred cCCC---------CeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHH--HhccCC----CCCcccc--
Confidence 9995 467888 899999999999999999963 55443100 000 000000 00 1210
Q ss_pred HHHHHHHHhcCCCceEE------EecCCCCceEEEe----ecc-ce--e----------eccCCCCCCeEEEec---CCc
Q 008289 191 DAEVQKELERGTPYTYR------FRVPKGGSLKISD----LIR-GE--V----------SWNLDTLGDFVIMRS---NGQ 244 (571)
Q Consensus 191 ~~e~~~~~~~g~~~~iR------~k~~~~~~~~~~D----~v~-G~--i----------~~~~~~~~D~Vl~Rs---dG~ 244 (571)
..|.|..+| |+++. |.| .+. |. + .+-...+.|+.|.|. =|.
T Consensus 160 --------~~g~~v~~~~~~qwF~~l~~-----~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~ 226 (524)
T 2x1l_A 160 --------ETGAPVTWTEEQTYFFRLSA-----YTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGV 226 (524)
T ss_dssp --------TTCCBEEEEEEEEEEECGGG-----SHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSC
T ss_pred --------ccCCcceEEecCCeEeeHHH-----HHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCc
Confidence 123332222 11110 000 001 00 0 111235789999886 244
Q ss_pred c--------ccch-hhhH-----------h----hhcCCCcEEEeCCCCCCCHHHHH---HHHHHhCCCCC-cEEEeeee
Q 008289 245 P--------VYNF-CVTV-----------D----DATMAISHVIRAEEHLPNTLRQA---LIYKALGFSMP-YFAHVSLI 296 (571)
Q Consensus 245 P--------tY~f-A~vV-----------D----D~~m~ItHVIRG~Dhl~ntp~q~---~l~~alg~~~P-~f~H~pli 296 (571)
| .|-+ ...+ + +....++.-+-|.|++ .+.+. .+..++|+++| .+.+++++
T Consensus 227 ~iP~~~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~di~~~G~D~~--~fh~~~~~a~l~~~g~~~~~~v~~hG~v 304 (524)
T 2x1l_A 227 PVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDII--RFHTVYWPAFLMSAGLPLPKRIFAHGWL 304 (524)
T ss_dssp EETTEEEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGH--HHHHTHHHHHHHHHTCCCCSCEEEECCE
T ss_pred cCCCCCCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCeEEEEeechh--HhHHHHHHHHHHHCCCCCCcEEEECcEE
Confidence 2 1211 1100 0 0112456556688887 24443 23456798877 45555887
Q ss_pred ecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHh
Q 008289 297 LAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEK 352 (571)
Q Consensus 297 ~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~ 352 (571)
+. +|+|||||.|+ +++.++.+. |-+++++-|++..+- ...+-.||.+.+.+.
T Consensus 305 ~~-~G~KMSKS~GN~v~p~d~i~~-~g~DalR~~ll~~~~--~~~d~~fs~~~l~~~ 357 (524)
T 2x1l_A 305 LN-RGEKMSKSIGNVVDPVNLVDT-FGLDQVRYFLLREVP--FGQDGSYNEDAIIGR 357 (524)
T ss_dssp EE-CSCSEETTTEESSCHHHHHHH-HCHHHHHHHHHHHSC--TTSCEEECHHHHHHH
T ss_pred Ee-CCcccCCcCCCCCCHHHHHHH-cChHHHHHHHHhcCC--CCCCCCcCHHHHHHH
Confidence 76 89999999997 788888875 889999999987442 223456787777643
No 29
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.56 E-value=1e-14 Score=164.03 Aligned_cols=258 Identities=19% Similarity=0.165 Sum_probs=164.6
Q ss_pred CCceEEEe-CCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCC-----------------------------
Q 008289 53 DGQVRVRF-APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDT----------------------------- 97 (571)
Q Consensus 53 ~~~vr~RF-APSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDT----------------------------- 97 (571)
+++|++=| .|.|||+|||||+|++++-..+||- +...++--|.|.
T Consensus 118 ~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~ 197 (629)
T 2zue_A 118 GKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERG 197 (629)
T ss_dssp TCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcccc
Confidence 34566655 5788899999999999987777774 334444455664
Q ss_pred --C-c----------------------------------------ccCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccce
Q 008289 98 --D-L----------------------------------------ERSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (571)
Q Consensus 98 --D-~----------------------------------------~R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy 134 (571)
| + +...+.+.+.+.++++.||+.+|.- +
T Consensus 198 ~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~---------~ 268 (629)
T 2zue_A 198 LKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLL---------V 268 (629)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEE---------E
T ss_pred cccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccc---------c
Confidence 1 1 1224566788999999999999862 3
Q ss_pred ecccc--HHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCC
Q 008289 135 RQSER--NSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPK 212 (571)
Q Consensus 135 ~QSer--~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~ 212 (571)
+.|+. .....+++++|.++|.+|.|. .| .|+| . +++ ++..
T Consensus 269 ~es~~~~~~~v~~vi~~L~~kG~~y~~~---------------~g---e~~G-----------------a-~~v--~~~~ 310 (629)
T 2zue_A 269 WESDIVRRKLFEIALELLSKNENFYIPS---------------DG---KYRG-----------------A-FVM--DLRK 310 (629)
T ss_dssp EHHHHHHTTHHHHHHHHHHTSTTEECCS---------------SS---TTTT-----------------C-EEE--ECTT
T ss_pred CcCccccchhHHHHHHHHHHCCCccccc---------------cC---CcCC-----------------c-EEE--ECcc
Confidence 66665 667889999999999999651 11 1222 1 112 2221
Q ss_pred CCceEEEeeccceeeccCCCCCCeEEEecCCccccch---hhhHhh--------hcC---------------------CC
Q 008289 213 GGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNF---CVTVDD--------ATM---------------------AI 260 (571)
Q Consensus 213 ~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~f---A~vVDD--------~~m---------------------~I 260 (571)
. | +...++..|+.|+||.+||.+ |.+.+. ... +.
T Consensus 311 ~----------g----~~~~~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~ 376 (629)
T 2zue_A 311 L----------F----PDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNA 376 (629)
T ss_dssp T----------C----SSSSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCC
T ss_pred c----------C----CccccCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCC
Confidence 0 1 111223489999999999965 445452 111 67
Q ss_pred cEEE--eCCCCCCCHHHHHHHHHHhCCCC-C-cEEEe--eeeecCCCCcccccCC--C-CchHHHHHCCCCHHHHHHHHH
Q 008289 261 SHVI--RAEEHLPNTLRQALIYKALGFSM-P-YFAHV--SLILAPDRSKLSKRHG--A-TSVGQFREMGYLPQAMVNYLA 331 (571)
Q Consensus 261 tHVI--RG~Dhl~ntp~q~~l~~alg~~~-P-~f~H~--pli~~~~g~KLSKR~g--~-~~v~~~r~~G~~Peai~n~l~ 331 (571)
+|+| .|.||....++...+.+++|++. + .+.|+ .++. .+|.|||||.| + ++++++.+.+. +....-+.
T Consensus 377 d~~IyV~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~V~-~~~~KMSkr~G~~n~v~l~dLl~e~~--~~a~~~~~ 453 (629)
T 2zue_A 377 NIVINVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVE-RPEGKFSGRKGTWVGFTVDEVIQEAV--KRARELIE 453 (629)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEE-BTTBCCCTTTTTTTTCBHHHHHHHHH--HHHHHHHH
T ss_pred CcEEEEEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeeeEE-cCCCcccCCCCCCCeeeHHHHHHHHH--HHHHHHHH
Confidence 7877 48888755555556778899975 3 57788 6655 46789999999 6 78888876421 11222222
Q ss_pred HhCCCCCCCcccC-----CHHHHHHhcCccccccCCCcccHHHHHHhhH
Q 008289 332 LLGWGDGTENEFF-----TLKQLVEKFTIERVNKSGAIFDSTKLRWMNG 375 (571)
Q Consensus 332 ~lG~~~~~~~e~~-----s~~eli~~F~~~~~~~s~~~fd~~kL~wlN~ 375 (571)
.-+-... +.+.- ---+.+++|.++.-..++..||++++..+++
T Consensus 454 ~~~~~~~-~~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~ 501 (629)
T 2zue_A 454 EKNPALS-DEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEG 501 (629)
T ss_dssp HHCTTSC-HHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSCCSS
T ss_pred hcCcccc-hhhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHHHHhc
Confidence 2111000 00000 0125578999988888999999999987665
No 30
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.50 E-value=8.9e-15 Score=162.77 Aligned_cols=267 Identities=15% Similarity=0.112 Sum_probs=160.4
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc-------------cCcHHHHHHHHHHHHH
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDLE-------------RSTKESEEAVLQDLSW 116 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~-----~~G~fiLRieDTD~~-------------R~~~~~~~~i~~~L~w 116 (571)
-+++--.|.|||.+||||+|++++...+||. ++..|+.-++|.+.+ ...+.+.+.+.+++++
T Consensus 28 ~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~ 107 (564)
T 3kfl_A 28 FFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQE 107 (564)
T ss_dssp EEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3556667899999999999999998888884 455677777776643 2357888999999999
Q ss_pred cCCCCCCCCCCCCCccceecc--ccHHHHHHHHHHHHHcCCcccc-----cCCHHHHHHHHHHHHhCCCCCCCCCcCCCC
Q 008289 117 LGLDWDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYRC-----FCSNEELEKMKEIAKLKQLPPVYTGKWATA 189 (571)
Q Consensus 117 lGl~~Degp~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~C-----fcs~eel~~~r~~~~~~~~~~~Y~g~cr~l 189 (571)
||+.+|. -++.+ ++.+..+++.++|.++|.+|.. ||..++-.- .+.....+ .+.+.+.|...
T Consensus 108 lgi~~D~---------~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l-~~~~~~~~-~~~~g~~c~~~ 176 (564)
T 3kfl_A 108 MNYDMNY---------FIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFL-TAQNVADG-VDRDGKPCKVS 176 (564)
T ss_dssp TTCCCSE---------EEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEE-CGGGEEEE-ECTTSCEEEEE
T ss_pred cCCCCCc---------cccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCC-CHHHhccC-cCCCCCEeccc
Confidence 9999995 24555 4888999999999999999975 555443100 00000000 01112233100
Q ss_pred CHHHHHHHHhcCCCceEE------EecCCCCceEEEeec----------------ccee-eccCCCCCCeEEEe---cC-
Q 008289 190 TDAEVQKELERGTPYTYR------FRVPKGGSLKISDLI----------------RGEV-SWNLDTLGDFVIMR---SN- 242 (571)
Q Consensus 190 ~~~e~~~~~~~g~~~~iR------~k~~~~~~~~~~D~v----------------~G~i-~~~~~~~~D~Vl~R---sd- 242 (571)
. ..|.+..+| |+++. |.|.+ +.++ ++-...+.|+.|-| ++
T Consensus 177 ~--------~~g~~~~~~~~~~~f~~l~~-----~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~ 243 (564)
T 3kfl_A 177 L--------ESGHVVTWVEEENYMFRLSA-----FRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVM 243 (564)
T ss_dssp T--------TTSCBCEEEEEEEEEECGGG-----GHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGT
T ss_pred c--------CCCCccEEEecceeEEEHHH-----HHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCC
Confidence 0 024433322 23221 11100 0000 11112578999999 33
Q ss_pred --Cc-----------------cccchhhhH---hh---------h--cC--CCcEEEeCCCCCCCHHHHHH----HHHHh
Q 008289 243 --GQ-----------------PVYNFCVTV---DD---------A--TM--AISHVIRAEEHLPNTLRQAL----IYKAL 283 (571)
Q Consensus 243 --G~-----------------PtY~fA~vV---DD---------~--~m--~ItHVIRG~Dhl~ntp~q~~----l~~al 283 (571)
|. .+| ++..- ++ . .. ..+--+-|.|++ .-|.. +..++
T Consensus 244 ~WGipiP~~~~~v~yVWfDa~~~y-~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii---~FH~~~wpa~L~a~ 319 (564)
T 3kfl_A 244 NWSIPVPGDERHCIYVWLDALFNY-YTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDIL---KFHAIYWPAFLMSA 319 (564)
T ss_dssp TCSCEETTEEEEEECHHHHHHTHH-HHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGH---HHHHTHHHHHHHHT
T ss_pred CCCeecCCCCCCEEEEeccCcHHH-HHHhCccccccccccchhcchhhhcCccceEEEeeccc---chHHHHHHHHHHhC
Confidence 21 122 11111 01 1 00 012223388876 34443 34678
Q ss_pred CCCCCcE-EEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhc
Q 008289 284 GFSMPYF-AHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKF 353 (571)
Q Consensus 284 g~~~P~f-~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F 353 (571)
|+++|.- ..++++ +.+|+|||||.|+ ++..++.+. |-+++++.||+..+- ...+-.|+.+.+++.+
T Consensus 320 g~~~~~~v~~hg~v-~~~G~KMSKS~GNvV~p~d~i~~-~G~DalR~~ll~~~~--~~~D~~fs~~~~~~~~ 387 (564)
T 3kfl_A 320 ELPLPERLVSHGWW-TKDHKKISKSLGNAFDPVEKAKE-FGIDALKYFLMRESN--FQDDGDYSDKNMVARL 387 (564)
T ss_dssp TCCCCSCEEEECCE-EETTEECCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHCC--SSCCEECCHHHHHHHH
T ss_pred CCCCCcEEEEcccE-eeCCccccccCCCCCCHHHHHHH-cCcHHHHHHHHHcCC--cccCCCCCHHHHHHHH
Confidence 9988753 445665 7899999999997 777777765 779999999987532 2345678888887644
No 31
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=99.26 E-value=9.6e-11 Score=122.63 Aligned_cols=202 Identities=19% Similarity=0.239 Sum_probs=144.8
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----C----CcccCcHHHHHHHHHHHHHcCCCCCCCCC
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----T----DLERSTKESEEAVLQDLSWLGLDWDEGPG 126 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD----T----D~~R~~~~~~~~i~~~L~wlGl~~Degp~ 126 (571)
..++.....|||.|||||...++.||......|.+.++.|-| | |+++ ..+....+..++.++|++++..
T Consensus 12 ~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~-~~~~~~~~~~~~lA~Gldp~k~-- 88 (340)
T 2g36_A 12 HMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSK-LKEYTRDLVRGFLACGIDPEKS-- 88 (340)
T ss_dssp CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTT-HHHHHHHHHHHHHHTTCCTTTS--
T ss_pred CCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHH-HHHHHHHHHHHHHHhCCChhHe--
Confidence 356777777889999999999999999999999999999999 6 6664 6667777788899999998853
Q ss_pred CCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceE
Q 008289 127 VGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTY 206 (571)
Q Consensus 127 ~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~i 206 (571)
..|.||+..+ |.+.+- .+.|++|-.+++.+- +-+. ++ -
T Consensus 89 -----~if~qS~~~~-~~el~~-------~l~~~~~v~~l~r~~--~~k~----------------~~-----------~ 126 (340)
T 2g36_A 89 -----VIFVQSGVKE-HAELAL-------LFSMIVSVSRLERVP--TYKE----------------IK-----------S 126 (340)
T ss_dssp -----EEEEGGGCTH-HHHHHH-------HHHTTSCHHHHHTCH--HHHT----------------C-------------
T ss_pred -----EEEECCchHH-HHHHHH-------HHHccCCHHHHHHhH--HHHh----------------HH-----------H
Confidence 2689999765 333322 356999888875321 1000 00 0
Q ss_pred EEecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhC--
Q 008289 207 RFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG-- 284 (571)
Q Consensus 207 R~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg-- 284 (571)
|++- .| .+ +-|..+|-.--+.|-...+.++|+.|+|...+.-....|.+.||
T Consensus 127 r~~~--------~~----~~--------------~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~ 180 (340)
T 2g36_A 127 ELNY--------KD----LS--------------TAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYL 180 (340)
T ss_dssp -------------C----CC--------------SHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHHHHHHHHHHHHHH
T ss_pred Hhcc--------CC----CC--------------ChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHHHHHHHHHHhhhh
Confidence 0000 00 00 12346666666667777899999999999988877777777664
Q ss_pred ----CCCCc--EEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHh
Q 008289 285 ----FSMPY--FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALL 333 (571)
Q Consensus 285 ----~~~P~--f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~l 333 (571)
++.|. ..|.|+|.+.+|+||||+.++ +.+.+ .|+.|..++...
T Consensus 181 yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d------sp~~i~~Ki~~a 230 (340)
T 2g36_A 181 YDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI------SEKELEQTILRM 230 (340)
T ss_dssp SCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC------CHHHHHHHHHTC
T ss_pred cccccCCchhhhccccccCCCCccccCCCCCCeEeeeC------CHHHHHHHHHhC
Confidence 34565 446899999999999999876 55554 899999999764
No 32
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=99.22 E-value=5.8e-11 Score=125.37 Aligned_cols=222 Identities=13% Similarity=0.104 Sum_probs=156.3
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCc--cc---CcHHHHHHHHHHHHHcCCCCCCCC
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDL--ER---STKESEEAVLQDLSWLGLDWDEGP 125 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD----TD~--~R---~~~~~~~~i~~~L~wlGl~~Degp 125 (571)
.+-+-|.| ||.||||| ..++.||..-...|.++++.|-| |+. .+ ...+....+..++.++|++++.-
T Consensus 37 ~iy~G~~P--Tg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~- 112 (364)
T 2cya_A 37 KGYIGYEP--SGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERV- 112 (364)
T ss_dssp EEEEEECC--CSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGC-
T ss_pred EEEeccCC--CCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccce-
Confidence 57788876 59999999 99999999999999999999999 433 13 34456677889999999998753
Q ss_pred CCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCce
Q 008289 126 GVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYT 205 (571)
Q Consensus 126 ~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~ 205 (571)
..+.||+.... ..+...++. +-|.+|-.++... ..|-++.
T Consensus 113 ------~i~~qS~~~~~-~~~~~~~~~----l~~~~t~~~l~r~----------~~~k~r~------------------- 152 (364)
T 2cya_A 113 ------RFVDAEELASD-KDYWGLVIR----VAKRASLARVRRA----------LTIMGRR------------------- 152 (364)
T ss_dssp ------EEEEHHHHHTC-HHHHHHHHH----HHHTSCHHHHHTT----------C-------------------------
T ss_pred ------EEEecchhhcc-hHHHHHHHH----HHCcCcHHHHHcC----------chhhhhh-------------------
Confidence 26889987543 344555543 6788888777532 1111100
Q ss_pred EEEecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCC
Q 008289 206 YRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGF 285 (571)
Q Consensus 206 iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~ 285 (571)
. .+.. + +-|..+|-.--+.|-...+.+||+.|.|...+.-....+.+.||.
T Consensus 153 ---~--~~~~----------i--------------~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l~rdla~r~~~ 203 (364)
T 2cya_A 153 ---A--EEAE----------V--------------DASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGR 203 (364)
T ss_dssp ---C--CGGG----------S--------------CTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHTTTTC
T ss_pred ---c--CCCC----------c--------------cchhhhhHHHHHhhHHhcCCCEEeccchHHHHHHHHHHHHHHcCC
Confidence 0 0000 0 224577777777888889999999999999888888888899999
Q ss_pred CCCcEEEeeeeecCC-----------------CCcccccC--CCCchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCH
Q 008289 286 SMPYFAHVSLILAPD-----------------RSKLSKRH--GATSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTL 346 (571)
Q Consensus 286 ~~P~f~H~pli~~~~-----------------g~KLSKR~--g~~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~ 346 (571)
..|...|.|+|.+.+ |+||||+. +++.+.+ .|+.|..++... .+++.+.+.-..
T Consensus 204 ~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d------~p~~i~~Ki~~a-~td~~~~~~~~v 276 (364)
T 2cya_A 204 KKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVD------SDDDIRRKIRKA-YCPAKQVQGNPV 276 (364)
T ss_dssp CCCEEEEECCCBCSSCC----------------CBCCSSSGGGSCBTTC------CHHHHHHHHHTS-CCCTTCCTTCHH
T ss_pred CCceeeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccC------CHHHHHHHHHhC-cCCCCCCCCCcH
Confidence 999999999999988 78999994 3466655 599999999763 333322232334
Q ss_pred HHHHHhcCcc
Q 008289 347 KQLVEKFTIE 356 (571)
Q Consensus 347 ~eli~~F~~~ 356 (571)
-++++.|...
T Consensus 277 ~~~~~~~~f~ 286 (364)
T 2cya_A 277 LEIARYILFA 286 (364)
T ss_dssp HHHHHHTTTT
T ss_pred HHHHHHHhcc
Confidence 5566666543
No 33
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=99.15 E-value=8e-10 Score=114.45 Aligned_cols=211 Identities=12% Similarity=0.139 Sum_probs=145.4
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC-CC------cccCcHHHHHHHHHHHHHcCCCCCCCCCC
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED-TD------LERSTKESEEAVLQDLSWLGLDWDEGPGV 127 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD-TD------~~R~~~~~~~~i~~~L~wlGl~~Degp~~ 127 (571)
.+-+.|.| ||.||||| ..++.||......|.++++.|-| |. ......+....+..++.++|++ .+
T Consensus 30 ~vy~G~~P--Tg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d-~~---- 101 (314)
T 2zp1_A 30 SAYIGFEP--SGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK-AK---- 101 (314)
T ss_dssp EEEEEECC--CSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC-CE----
T ss_pred EEEEccCC--CCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC-eE----
Confidence 57899998 58999999 99999999999999999999954 32 2245567778899999999998 32
Q ss_pred CCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEE
Q 008289 128 GGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYR 207 (571)
Q Consensus 128 ~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR 207 (571)
-++||+.... ..+...++ .+.|++|-.++.... ..+.+.
T Consensus 102 -----~~~qs~~~~~-~~~~~~~~----~l~~~~t~~~l~~~~---------~~~~~~---------------------- 140 (314)
T 2zp1_A 102 -----YVYGSEFQLD-KDYTLNVY----RLALKTTLKRARRSM---------ELIARE---------------------- 140 (314)
T ss_dssp -----EEEGGGTTTS-HHHHHHHH----HHHHHSCHHHHHHHT---------TTTSCC----------------------
T ss_pred -----EEECChhhcc-hHHHHHHH----HHHCcCcHHHHhccc---------hhhhhc----------------------
Confidence 5679997654 45556565 367899988886532 111100
Q ss_pred EecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCC
Q 008289 208 FRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSM 287 (571)
Q Consensus 208 ~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~ 287 (571)
. ++ . +-|..+|-.--+.|=...+.+||+.|+|...+. .+-+-+.-+.
T Consensus 141 ----~---------------------~~---~-~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~----~l~R~i~~~~ 187 (314)
T 2zp1_A 141 ----D---------------------EN---P-KVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIH----MLARELLPKK 187 (314)
T ss_dssp ----C---------------------SS---C-CTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHHH----HHHHHHSSSC
T ss_pred ----c---------------------CC---C-CchhhhhHHHHHHhHHhhCCCEEEcChhHHHHH----HHHHHhcCCC
Confidence 0 00 0 123355555555666667999999999987533 3334444467
Q ss_pred CcEEEeeeeecCCC-CcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHHHhcC
Q 008289 288 PYFAHVSLILAPDR-SKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLVEKFT 354 (571)
Q Consensus 288 P~f~H~pli~~~~g-~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli~~F~ 354 (571)
|...|.|+|.+.+| +||||+.++ +.+.+ .|+.|..-+... .+++...+..++=++.+.|.
T Consensus 188 ~~~~~~~~l~~l~G~~KMSKS~~~~I~L~d------~~~~i~~KI~~a-~td~~~~~~~~~~~~~~~~~ 249 (314)
T 2zp1_A 188 VVCIHNPVLTGLDGEGKMSSSKGNFIAVDD------SPEEIRAKIKKA-YCPAGVVEGNPIMEIAKYFL 249 (314)
T ss_dssp CEEEEECCCBCTTSSSBCCTTTTCSCBTTC------CHHHHHHHHHHS-CCCTTCCTTCHHHHHHHHHC
T ss_pred cEEeeccccccCCcccccCCCCcceecCCC------CHHHHHHHHHhC-CCCCCCCCCCcHHHHHHHHh
Confidence 88899999999999 799999665 56654 788888888763 33333333334445666654
No 34
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.15 E-value=7e-11 Score=135.01 Aligned_cols=275 Identities=17% Similarity=0.239 Sum_probs=152.5
Q ss_pred EEeCCCCCCcCchhhHHH-HHHHHHHHHH--cCCeEEE---EecCCCc-------------ccCcHHHHHHHHHHHHHcC
Q 008289 58 VRFAPSPTGNLHVGGART-ALFNYLFARS--KGGKFVL---RIEDTDL-------------ERSTKESEEAVLQDLSWLG 118 (571)
Q Consensus 58 ~RFAPSPtG~LHiG~~rt-Al~n~l~Ar~--~~G~fiL---RieDTD~-------------~R~~~~~~~~i~~~L~wlG 118 (571)
|==.|.|||.+||||+++ .+....+||. ..|.=++ =.|+.+. ......+.+.+.+++++||
T Consensus 7 tt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~lg 86 (722)
T 1rqg_A 7 TSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRAK 86 (722)
T ss_dssp EECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 334589999999999998 8988888884 4455444 4444433 2235678899999999999
Q ss_pred CCCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHhCCCC------CCCCCc
Q 008289 119 LDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR-----CFCSNEELEKMKEIAKLKQLP------PVYTGK 185 (571)
Q Consensus 119 l~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~-----Cfcs~eel~~~r~~~~~~~~~------~~Y~g~ 185 (571)
+.||. .|+.++ +.+.-+++..+|.++|++|. -||+..+-.- -+ ....|.. ..|-..
T Consensus 87 is~D~---------~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl-~d-~~v~gtcP~c~~~~~~Gd~ 155 (722)
T 1rqg_A 87 ISFDF---------FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFL-PD-RFVIGTCPYCGAEDQKGDQ 155 (722)
T ss_dssp CCCSE---------EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCC-CG-GGCCSBCSSSCCSCCCTTT
T ss_pred CCCCC---------CeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCc-ch-hhcccccCccCCccCCcch
Confidence 99996 356664 67778899999999999997 3444332000 00 0000100 011111
Q ss_pred C---CC-CCHHHHHH--HHhcCCCceEE------EecCCCC--ce------EEEeecccee-eccCCCCCCeEEEecC--
Q 008289 186 W---AT-ATDAEVQK--ELERGTPYTYR------FRVPKGG--SL------KISDLIRGEV-SWNLDTLGDFVIMRSN-- 242 (571)
Q Consensus 186 c---r~-l~~~e~~~--~~~~g~~~~iR------~k~~~~~--~~------~~~D~v~G~i-~~~~~~~~D~Vl~Rsd-- 242 (571)
| .. +++++... ....|.+..+| |+++.-. .. .|..-++.++ .|-...+.|+.|-|.-
T Consensus 156 c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~ISR~~~W 235 (722)
T 1rqg_A 156 CEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNW 235 (722)
T ss_dssp CSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSS
T ss_pred hhhcccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCcccceeccccC
Confidence 2 11 11111100 00123333333 2221100 00 0000000000 0101457788888831
Q ss_pred C--ccc----cc-----------h---hhh------------HhhhcC----CC--cEEEeCCCCCCCHHHHHH----HH
Q 008289 243 G--QPV----YN-----------F---CVT------------VDDATM----AI--SHVIRAEEHLPNTLRQAL----IY 280 (571)
Q Consensus 243 G--~Pt----Y~-----------f---A~v------------VDD~~m----~I--tHVIRG~Dhl~ntp~q~~----l~ 280 (571)
| .|. ++ . +.. .|++-. ++ -|++ |.|.+ +.|.. .+
T Consensus 236 G~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~-GkDii---~fH~~~wpA~l 311 (722)
T 1rqg_A 236 GIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFI-GKDNI---PFHAIFWPAFL 311 (722)
T ss_dssp SCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEE-EGGGH---HHHHTHHHHHH
T ss_pred ccccCccccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEc-ccccc---ccchhhhHHHH
Confidence 2 242 11 1 111 122221 22 2554 77765 33432 23
Q ss_pred HHhC----------CCCCc-EEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHH
Q 008289 281 KALG----------FSMPY-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQ 348 (571)
Q Consensus 281 ~alg----------~~~P~-f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~e 348 (571)
.+.| |+.|. +.|+++++. +|+||||+.|+ ++..++.+ .|-+++++-||+..+- ...+-.||.++
T Consensus 312 ~~~~~~l~~d~~rg~~~Pk~v~~hG~v~~-~G~KMSKS~GNvV~p~d~i~-~ygaDalR~~ll~~~~--~~~D~~fs~~~ 387 (722)
T 1rqg_A 312 MAYGKYKDEEVEAEWNLPYDIPANEYLTL-EGKKFSTSRNWAIWVHEFLD-VFPADYLRYYLTTIMP--ETRDSDFSFSD 387 (722)
T ss_dssp HTTCCBCSSSCCBCBCCCSBCCEECCEEE-TTEECBTTTTBSCBHHHHTT-TSCHHHHHHHHHHTCC--SSSCEEECHHH
T ss_pred hccCCCcccccccCCCCCCEEEEeeeEEe-CCeeeeeeCCCcCCHHHHHH-hcCchHHHHHHHhcCC--CCCCCccCHHH
Confidence 4554 77784 568888777 99999999998 78888877 5899999999987642 23456678877
Q ss_pred HHH
Q 008289 349 LVE 351 (571)
Q Consensus 349 li~ 351 (571)
+++
T Consensus 388 ~~~ 390 (722)
T 1rqg_A 388 FKV 390 (722)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 35
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=99.11 E-value=1.1e-09 Score=114.53 Aligned_cols=190 Identities=16% Similarity=0.171 Sum_probs=135.4
Q ss_pred CCCcCchhhHHHHHHHHHHHHHcC-CeEEEEecC-CCccc-------CcHHHHHHHHHHHHHcCCCCCCCCCCCCCccce
Q 008289 64 PTGNLHVGGARTALFNYLFARSKG-GKFVLRIED-TDLER-------STKESEEAVLQDLSWLGLDWDEGPGVGGDYGPY 134 (571)
Q Consensus 64 PtG~LHiG~~rtAl~n~l~Ar~~~-G~fiLRieD-TD~~R-------~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy 134 (571)
|||.|||||...++.||......| .+.++-|-| |.... ...+....+..++.++|++++.- ..|
T Consensus 10 PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~-------~i~ 82 (337)
T 2el7_A 10 PSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKV-------TLF 82 (337)
T ss_dssp SCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTS-------EEE
T ss_pred CCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhhe-------EEE
Confidence 669999999999999999877777 788888888 32221 34566677888899999998743 268
Q ss_pred eccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCC
Q 008289 135 RQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGG 214 (571)
Q Consensus 135 ~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~ 214 (571)
.||+..+ |.+.+. .+.|++|-.+++.+- ...+++..+ .
T Consensus 83 ~qS~~~~-~~el~~-------~l~~~~~~~~l~r~~----------------------~~k~r~~~~------------~ 120 (337)
T 2el7_A 83 VQSHVPE-HTELSW-------VFTTLTPLGDLTRMT----------------------QFKDKASKQ------------E 120 (337)
T ss_dssp EGGGSTH-HHHHHH-------HHHHTSBHHHHHTSH----------------------HHHHHTTSS------------S
T ss_pred EcCcchh-hHHHHH-------HHHccCCHHHHHHhH----------------------HHHHHhccC------------C
Confidence 9999876 333332 266888888765321 011111100 0
Q ss_pred ceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHh----C--CCCC
Q 008289 215 SLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKAL----G--FSMP 288 (571)
Q Consensus 215 ~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~al----g--~~~P 288 (571)
.+ +=|..+|-.--+.|-...+.++|+.|+|...|.-....|.+.| | +..|
T Consensus 121 ~~------------------------~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P 176 (337)
T 2el7_A 121 TV------------------------WSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEP 176 (337)
T ss_dssp CC------------------------BHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCC
T ss_pred CC------------------------ChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCC
Confidence 00 1134566666666777789999999999998887777777655 6 6778
Q ss_pred cEEEe---eeeecCCC-CcccccCCC-CchHHHHHCCCCHHHHHHHHHH
Q 008289 289 YFAHV---SLILAPDR-SKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 289 ~f~H~---pli~~~~g-~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~ 332 (571)
...|. |+|.+.+| +||||+.++ +.+.+ .|+.|..++..
T Consensus 177 ~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d------~p~~i~~Ki~~ 219 (337)
T 2el7_A 177 QALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE------PEESIWQKIQH 219 (337)
T ss_dssp EEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS------CHHHHHHHHHT
T ss_pred eeecccccccccCCCCccccCCCCCCeeeCcC------CHHHHHHHHHh
Confidence 88887 89999999 999999887 44543 59999998875
No 36
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.10 E-value=9.9e-11 Score=129.20 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=74.0
Q ss_pred EEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------------ccCcHHHHHHHHHHHHHcC
Q 008289 57 RVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL----------------ERSTKESEEAVLQDLSWLG 118 (571)
Q Consensus 57 r~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~----------------~R~~~~~~~~i~~~L~wlG 118 (571)
+|==.|.|||.||||||++.++-..++|. ..|.=++-+-+||. .--.+++.+.+.+++++||
T Consensus 13 Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~lg 92 (542)
T 3u1f_A 13 VTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQMD 92 (542)
T ss_dssp EEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred EeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34334899999999999999999999985 46777777888885 1124688899999999999
Q ss_pred CCCCCCCCCCCCccceecc--ccHHHHHHHHHHHHHcCCccc
Q 008289 119 LDWDEGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 119 l~~Degp~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 158 (571)
+.+|- .++.+ ++.+.-+++..+|.++|.+|.
T Consensus 93 i~~D~---------~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 125 (542)
T 3u1f_A 93 YSIDY---------FIRTTNEQHKAVVKELWTKLEQKGDIYL 125 (542)
T ss_dssp CCCSE---------EEETTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CccCc---------CccCCCHHHHHHHHHHHHHHhhcCcEEe
Confidence 99985 24444 356677788899999999997
No 37
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=99.05 E-value=1.3e-09 Score=114.42 Aligned_cols=200 Identities=22% Similarity=0.232 Sum_probs=137.7
Q ss_pred CceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCccc------CcHHHHHHHHHHHHHcCCCCCCCCCC
Q 008289 54 GQVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLER------STKESEEAVLQDLSWLGLDWDEGPGV 127 (571)
Q Consensus 54 ~~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieDTD~~R------~~~~~~~~i~~~L~wlGl~~Degp~~ 127 (571)
..+-+.|.| ||.|||||...++.||.........|++.-|+|.... ...+....+..++.++|++|+..
T Consensus 23 ~~vysG~~P--TG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~--- 97 (351)
T 1yi8_B 23 PRVLTGDRP--TGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKT--- 97 (351)
T ss_dssp SEEEEEECC--SSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTE---
T ss_pred cEEEEeeCC--CCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhc---
Confidence 357788987 5899999999999999765554445666666543332 34566667888999999998843
Q ss_pred CCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHh-cCCCceE
Q 008289 128 GGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELE-RGTPYTY 206 (571)
Q Consensus 128 ~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~-~g~~~~i 206 (571)
..|.||+..+ |.+.. ..|.|+++-.++..+- .+.+++. .|-
T Consensus 98 ----~i~~qS~~~~-~~el~-------~~l~~~~~v~~l~r~~----------------------~~k~~~~~~~f---- 139 (351)
T 1yi8_B 98 ----TCVVQSAVPE-LAELT-------VYFLNLVTVSHLRQNP----------------------TVKAEIAQKGY---- 139 (351)
T ss_dssp ----EEEEGGGCTH-HHHHH-------HHHHTTSBHHHHHTCH----------------------HHHHHHHHHTC----
T ss_pred ----EEEEcCchhh-HHHHH-------HHHhccCCHHHHHhhh----------------------HHHHHHhhcCC----
Confidence 2688999875 33322 2467999988876321 1111111 010
Q ss_pred EEecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHh---
Q 008289 207 RFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKAL--- 283 (571)
Q Consensus 207 R~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~al--- 283 (571)
.. + + +-|..+|-.--+.|-...+.+||+.|+|...|.-....|.+.|
T Consensus 140 ----~~-~-~------------------------~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~ 189 (351)
T 1yi8_B 140 ----GE-R-V------------------------PAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNAL 189 (351)
T ss_dssp ----TT-C-C------------------------BHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHH
T ss_pred ----CC-C-C------------------------chHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHHHHHHHHHHhh
Confidence 00 0 0 1244666666677777789999999999998888888777765
Q ss_pred -C--CCCCcEE--EeeeeecCCCC-cccccCCC-CchHHHHHCCCCHHHHHHHHHH
Q 008289 284 -G--FSMPYFA--HVSLILAPDRS-KLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 284 -g--~~~P~f~--H~pli~~~~g~-KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~ 332 (571)
| ++.|... |.|+|.+.+|+ ||||+.++ +.+.+ .|+.|..++..
T Consensus 190 yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d------~p~~i~~Ki~~ 239 (351)
T 1yi8_B 190 YAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGD------SADEVARKVMG 239 (351)
T ss_dssp TCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTC------CHHHHHHHHHT
T ss_pred cccccCCCeeeeecCccccCCCCccccCCCCCCeecCCC------CHHHHHHHHHh
Confidence 4 4567643 57999999997 99999887 44543 59999999875
No 38
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=99.01 E-value=2.1e-10 Score=120.35 Aligned_cols=201 Identities=13% Similarity=0.112 Sum_probs=138.9
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC-------CCcccCcHHHHHHHHHHHHHcCCCCCCCCCCC
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED-------TDLERSTKESEEAVLQDLSWLGLDWDEGPGVG 128 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD-------TD~~R~~~~~~~~i~~~L~wlGl~~Degp~~~ 128 (571)
|-+=|- |||.|||||...++.||..... +.++++.|-| .|++ ...+....+..++.++||+++..
T Consensus 7 i~sG~~--PTG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~~d~~-~i~~~~~~~~~~~lA~Gldp~k~---- 78 (348)
T 2yy5_A 7 ALTGIQ--ASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQPQ-ALKQNNFDLVRTLLAVGLDPQKA---- 78 (348)
T ss_dssp EEEEEC--CCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTE----
T ss_pred EEEeeC--CCCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCCCCHH-HHHHHHHHHHHHHHHhCCChhHe----
Confidence 334444 5699999999999999987766 7899999999 5665 45556677788899999999853
Q ss_pred CCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEE
Q 008289 129 GDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRF 208 (571)
Q Consensus 129 g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~ 208 (571)
..|.||+..+ +.+..-.| .|+++-.+++.+.. |..+... .+ |
T Consensus 79 ---~if~qS~~~~-~~el~w~l-------~~~~~~~~l~R~~~----------~k~~~~~-----------~~------~ 120 (348)
T 2yy5_A 79 ---CLFLQSDLLE-HSMMGYLM-------MVQSNLGELQRMTQ----------FKAKKAE-----------QT------R 120 (348)
T ss_dssp ---EEEEGGGCHH-HHHHHHHH-------HHHSBHHHHHHCHH----------HHTTC----------------------
T ss_pred ---EEEECCcccc-hhHHHHHH-------HhhccHHHHhchHH----------HHHHHHh-----------hc------c
Confidence 2689999877 43433332 48899888876431 1111100 00 0
Q ss_pred ecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhC----
Q 008289 209 RVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG---- 284 (571)
Q Consensus 209 k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg---- 284 (571)
.|+| .|- -+-|..+|-.--+.|-...+.+||+.|+|...+.-....+.+.||
T Consensus 121 --------~~~~-------------~~~---~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg 176 (348)
T 2yy5_A 121 --------NPNG-------------TLN---IPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFK 176 (348)
T ss_dssp ---------------------------C---CBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred --------cccc-------------CCC---CChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHHHHHHHHHhhhhcc
Confidence 0111 000 023456676666777777899999999999988877777777775
Q ss_pred --CCCCcEEE---eeeeecCCC--CcccccCCC----CchHHHHHCCCCHHHHHHHHHH
Q 008289 285 --FSMPYFAH---VSLILAPDR--SKLSKRHGA----TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 285 --~~~P~f~H---~pli~~~~g--~KLSKR~g~----~~v~~~r~~G~~Peai~n~l~~ 332 (571)
+..|...| .|+|.+.+| +||||+.++ +.+.+ .|+.|..-+..
T Consensus 177 ~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D------~~~~i~~KI~~ 229 (348)
T 2yy5_A 177 LKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD------PKEVVVKKIRQ 229 (348)
T ss_dssp CCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC------CHHHHHHHHHT
T ss_pred cccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecC------CHHHHHHHHHh
Confidence 67888888 589999888 899999887 44443 67777776654
No 39
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=99.00 E-value=1.7e-09 Score=112.60 Aligned_cols=189 Identities=17% Similarity=0.166 Sum_probs=133.5
Q ss_pred CCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc--cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccceecc
Q 008289 64 PTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE--RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQS 137 (571)
Q Consensus 64 PtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD----TD~~--R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~QS 137 (571)
|||.|||||...++.||..... |.+.++.|-| |++. ....+....+..++.++|++++.. ..|.||
T Consensus 10 PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~-------~if~qS 81 (328)
T 1i6k_A 10 PSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQA-------TLFIQS 81 (328)
T ss_dssp CCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTE-------EEEEGG
T ss_pred CCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhc-------EEEecC
Confidence 6699999999999999997754 8899999999 8531 134556667888999999998853 268999
Q ss_pred ccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCceE
Q 008289 138 ERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSLK 217 (571)
Q Consensus 138 er~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~ 217 (571)
+..+ |.+..-.| .|.++-.+++.+.. | ..+...+. .+
T Consensus 82 ~~~~-~~~l~w~l-------~~~~~~~~l~r~~~----------~------------k~~~~~~~------------~~- 118 (328)
T 1i6k_A 82 EVPA-HAQAAWML-------QCIVYIGELERMTQ----------F------------KEKSAGKE------------AV- 118 (328)
T ss_dssp GCTH-HHHHHHHH-------HHHSCHHHHHTCHH----------H------------HHHHTTCS------------SC-
T ss_pred chhh-hhHHHHHH-------hccccHHHHHHHHH----------H------------HHHHhccC------------CC-
Confidence 9866 33433322 37888877765421 1 00110000 00
Q ss_pred EEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhC------CCCCcEE
Q 008289 218 ISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG------FSMPYFA 291 (571)
Q Consensus 218 ~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg------~~~P~f~ 291 (571)
+-|..+|-.--+.|-...+.++|+.|+|...+.-....|.+.|| +..|...
T Consensus 119 -----------------------~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~l 175 (328)
T 1i6k_A 119 -----------------------SAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEAR 175 (328)
T ss_dssp -----------------------CHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEE
T ss_pred -----------------------CchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHHHhCcccccccCCCeee
Confidence 11345666666667777899999999999988877777777776 5577766
Q ss_pred E---eeeeecCCC--CcccccCCC----CchHHHHHCCCCHHHHHHHHHH
Q 008289 292 H---VSLILAPDR--SKLSKRHGA----TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 292 H---~pli~~~~g--~KLSKR~g~----~~v~~~r~~G~~Peai~n~l~~ 332 (571)
+ .|+|.+.+| +||||+.++ +.+.+ .|+.|..-+..
T Consensus 176 i~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d------~~~~i~~KI~~ 219 (328)
T 1i6k_A 176 IPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD------DAKTIEKKIKS 219 (328)
T ss_dssp CCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC------CHHHHHHHHHH
T ss_pred eccccccccCCCCCccCCCCCCCCcCceeeecC------CHHHHHHHHHh
Confidence 4 589999999 899999987 44443 67787777765
No 40
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=98.55 E-value=7.8e-07 Score=92.34 Aligned_cols=190 Identities=17% Similarity=0.201 Sum_probs=122.1
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC-C----Ccc-cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccceec
Q 008289 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIED-T----DLE-RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQ 136 (571)
Q Consensus 63 SPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD-T----D~~-R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~Q 136 (571)
-|||.|||||...++.||..-.. |.+.+.-|-| + |+. ....+....+..++..+|++++.- -.|.|
T Consensus 11 ~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~-------~i~~q 82 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKS-------VFWLQ 82 (322)
T ss_dssp CCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTS-------EEEEG
T ss_pred CCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccce-------EEEEC
Confidence 47799999999999988876544 6665555555 1 221 124455666777888899998753 26889
Q ss_pred cccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCce
Q 008289 137 SERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSL 216 (571)
Q Consensus 137 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~ 216 (571)
|+-.+ |.+.+-. +-|+++-.++..+- ...+++..+. .+
T Consensus 83 S~~~~-~~el~~~-------l~~~~~~~~l~r~~----------------------~~K~~~~~~~------------~~ 120 (322)
T 3tzl_A 83 SDVKE-VMELYWI-------LSQFTPMGLLERAH----------------------SYKDKVAKGL------------SA 120 (322)
T ss_dssp GGCTH-HHHHHHH-------HGGGCBHHHHHSCH----------------------HHHHHHHTTC------------CC
T ss_pred Ccchh-HHHHHHH-------HhccCcHHHHHhhh----------------------HHHHHHccCC------------CC
Confidence 98765 3333322 35888888775321 1111121110 00
Q ss_pred EEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhC------CCCCcE
Q 008289 217 KISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG------FSMPYF 290 (571)
Q Consensus 217 ~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg------~~~P~f 290 (571)
+-|..+|-.--+.|-...+.++|.-|.|-..+--.=.-+.+.+| +..|.-
T Consensus 121 ------------------------~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~ 176 (322)
T 3tzl_A 121 ------------------------SHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEA 176 (322)
T ss_dssp ------------------------BHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEE
T ss_pred ------------------------chHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCchh
Confidence 11345666666777777899999999996644322233344443 356665
Q ss_pred EE---eeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHH
Q 008289 291 AH---VSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 291 ~H---~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~ 332 (571)
.| .|+|.+.+|+||||+.++ +.+.+ .|+.|...+..
T Consensus 177 ~~~~~~~~l~~l~G~KMSKS~~n~I~L~d------~p~~i~~KI~~ 216 (322)
T 3tzl_A 177 RVNEEVAVVVGTDGAKMSKSYQNTIDIFS------SEKTLKKQISS 216 (322)
T ss_dssp ECCCSSCCCBCTTSSBCCGGGTCCCBSSC------CHHHHHHHHHT
T ss_pred hhccccccccCCCCCcCCCCCCCceecCC------CHHHHHHHHHh
Confidence 55 689999999999999876 45543 79999998875
No 41
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=98.17 E-value=9.7e-06 Score=87.27 Aligned_cols=84 Identities=20% Similarity=0.228 Sum_probs=70.4
Q ss_pred CccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCC-cccccCCC-CchHHHHHCC
Q 008289 243 GQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRS-KLSKRHGA-TSVGQFREMG 320 (571)
Q Consensus 243 G~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~-KLSKR~g~-~~v~~~r~~G 320 (571)
|..+|-.--+.|-...+.++|+-|.|-..|.-.-..|.+.+|..+|...|.|+|.+.+|+ ||||+.++ +.+.+
T Consensus 171 ~ef~YPlLQaaDil~l~~~l~~gG~DQ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~n~I~L~d----- 245 (432)
T 1h3f_A 171 HELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE----- 245 (432)
T ss_dssp GGGTHHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS-----
T ss_pred cccchhhHHhhhhhhcCccEEEechHHHHHHHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCCCeeCCCC-----
Confidence 346777777778777889999999999988777778888999887777899999999996 99999876 56655
Q ss_pred CCHHHHHHHHHH
Q 008289 321 YLPQAMVNYLAL 332 (571)
Q Consensus 321 ~~Peai~n~l~~ 332 (571)
.|+.+..++..
T Consensus 246 -sp~~i~~Ki~~ 256 (432)
T 1h3f_A 246 -PPEAMFKKLMR 256 (432)
T ss_dssp -CHHHHHHHHHT
T ss_pred -CHHHHHHHHhC
Confidence 89999999865
No 42
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=98.05 E-value=5e-05 Score=81.74 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=49.9
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCC--CcccccCCC--CchHHHHHCCCCHHHHHHHHHHh
Q 008289 258 MAISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDR--SKLSKRHGA--TSVGQFREMGYLPQAMVNYLALL 333 (571)
Q Consensus 258 m~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g--~KLSKR~g~--~~v~~~r~~G~~Peai~n~l~~l 333 (571)
.+-++|.-|.|-..|.-.=.-+.+.+|++.|...|.|+|.+.+| +||||+.++ +.+.+ .|+.|.+-+...
T Consensus 248 ~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d------~p~~i~~KI~~y 321 (432)
T 2ip1_A 248 KTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTD------TPKQIQKKINKY 321 (432)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHHHHHHTSCCCEEEEECCCCCTTC--------CGGGCCBTTC------CHHHHHHHHHHH
T ss_pred CCceEEEeccCcHHHHHHHHHHHHHhCCCCceeeccccccCCCCCccccCCCCCCCeEeccC------CHHHHHHHhhhh
Confidence 35788999999876654445566889998898899999999999 899999865 55554 678887777653
Q ss_pred CC
Q 008289 334 GW 335 (571)
Q Consensus 334 G~ 335 (571)
-.
T Consensus 322 A~ 323 (432)
T 2ip1_A 322 AF 323 (432)
T ss_dssp SC
T ss_pred cc
Confidence 33
No 43
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=97.89 E-value=9.2e-05 Score=80.61 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=56.7
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCC--CcccccCCC--CchHHHHHCCCCHHHHHHHHHHhC
Q 008289 259 AISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDR--SKLSKRHGA--TSVGQFREMGYLPQAMVNYLALLG 334 (571)
Q Consensus 259 ~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g--~KLSKR~g~--~~v~~~r~~G~~Peai~n~l~~lG 334 (571)
+-++|..|.|-..|.-.-.-|.+.+|++.|...|.|+|.+.+| +||||+.++ +.+.+ .|+.|.+-+...-
T Consensus 303 ~~~~VpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d------~p~~i~kKi~~yA 376 (477)
T 1r6t_A 303 IQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTD------TAKQIKTKVNKHA 376 (477)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTC------CHHHHHHHHHHHS
T ss_pred CceeEeccccHHHHHHHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCCCceeecC------CHHHHHHHhcccc
Confidence 5588889999887766666667889998899899999999999 899999876 55554 6888877776533
Q ss_pred CC
Q 008289 335 WG 336 (571)
Q Consensus 335 ~~ 336 (571)
++
T Consensus 377 ~t 378 (477)
T 1r6t_A 377 FS 378 (477)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 44
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=97.88 E-value=7.5e-05 Score=79.01 Aligned_cols=221 Identities=15% Similarity=0.124 Sum_probs=131.7
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----C-Cc-ccCc---HHHH-HHHH----HHHHHcCCC
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----T-DL-ERST---KESE-EAVL----QDLSWLGLD 120 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD----T-D~-~R~~---~~~~-~~i~----~~L~wlGl~ 120 (571)
.+-+=|- |||.|||||-..++.+|..-...|.+.++=|-| | |+ .+.. .+.. ..+. .++.-+|++
T Consensus 35 ~vy~G~~--PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~d 112 (375)
T 2cyc_A 35 QHYIGFE--ISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGD 112 (375)
T ss_dssp BEEEEEC--CCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCC
T ss_pred EEEeCCC--CCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445555 558999999555888888888888877766665 2 32 1222 1222 3344 778889998
Q ss_pred CCCCCCCCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhc
Q 008289 121 WDEGPGVGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELER 200 (571)
Q Consensus 121 ~Degp~~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~ 200 (571)
++.- ..+.||+-.+.- .+..-++. +-|.++-.++... +.|
T Consensus 113 p~k~-------~i~~qS~~~~~~-~~~~~~~~----~~~~~~~~~m~~~----------~~~------------------ 152 (375)
T 2cyc_A 113 PKKV-------EFVLASEILEKG-DYWQTVID----ISKNVTLSRVMRS----------ITI------------------ 152 (375)
T ss_dssp GGGS-------EEEETHHHHTBH-HHHHHHHH----HHTTSBHHHHHHT----------GGG------------------
T ss_pred ccce-------EEEEcchhhhhh-HHHHHHHH----HhceeEHHHHhcc----------chh------------------
Confidence 7642 268899744322 22233332 2233333333210 001
Q ss_pred CCCceEEEecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHH
Q 008289 201 GTPYTYRFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIY 280 (571)
Q Consensus 201 g~~~~iR~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~ 280 (571)
+++.. +|-+ +=|..+|-.--+.|-...+.++|+-|.|-..+--.=.-+.
T Consensus 153 ----------------------k~r~~------~~~i---~~g~f~YP~LQaaDil~~~~~~vp~G~DQ~~~i~l~rdla 201 (375)
T 2cyc_A 153 ----------------------MGRQM------GEAI---DFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVA 201 (375)
T ss_dssp ----------------------GTCCC------CTTC---BTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHG
T ss_pred ----------------------hhhcc------CCCC---ChHHHHHHHHHHHHHHHhCCCeecccchHHHHHHHHHHHH
Confidence 01000 0000 2245677777777888899999999999764433334445
Q ss_pred HHhCC--------C-CCcEEEeeeeecCCC------------------CcccccC-C-CCchHHHHHCCCCHHHHHHHHH
Q 008289 281 KALGF--------S-MPYFAHVSLILAPDR------------------SKLSKRH-G-ATSVGQFREMGYLPQAMVNYLA 331 (571)
Q Consensus 281 ~alg~--------~-~P~f~H~pli~~~~g------------------~KLSKR~-g-~~~v~~~r~~G~~Peai~n~l~ 331 (571)
+.+|. . .|...|.|+|.+.+| +||||+. + ++.+.+ .|+.|..++.
T Consensus 202 ~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d------~p~~i~~KI~ 275 (375)
T 2cyc_A 202 QKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHD------SPEEIRQKLR 275 (375)
T ss_dssp GGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTC------CHHHHHHHHH
T ss_pred HHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccCC------CHHHHHHHHH
Confidence 66776 3 677789999999988 8999997 3 466655 5999999997
Q ss_pred HhCCCCCCCcccCCHHHHHHhcCc
Q 008289 332 LLGWGDGTENEFFTLKQLVEKFTI 355 (571)
Q Consensus 332 ~lG~~~~~~~e~~s~~eli~~F~~ 355 (571)
.. .+++.+.+.-..-++++.|.+
T Consensus 276 ~A-~t~~~~~~~~~v~~~~~~~~f 298 (375)
T 2cyc_A 276 KA-FCPAREVRYNPVLDWVEYIIF 298 (375)
T ss_dssp HS-CCCTTCCSSCHHHHHHHHTTT
T ss_pred Hh-cCCCCCCCCChHHHHHHHHhc
Confidence 63 333322233334455666654
No 45
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=97.87 E-value=2.7e-05 Score=82.81 Aligned_cols=189 Identities=15% Similarity=0.095 Sum_probs=115.7
Q ss_pred eEEEeCCCCCCcCchhhHHHHH-HHHHHHHHcCCeEEEEecC-C----Cc---ccCcHHHHHHHHHHHHHcCCCCCCCCC
Q 008289 56 VRVRFAPSPTGNLHVGGARTAL-FNYLFARSKGGKFVLRIED-T----DL---ERSTKESEEAVLQDLSWLGLDWDEGPG 126 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl-~n~l~Ar~~~G~fiLRieD-T----D~---~R~~~~~~~~i~~~L~wlGl~~Degp~ 126 (571)
+-+=|. |||.|||||.-.++ .+|+ -...|...++=|-| + |+ .....+....+..++..+|++++..
T Consensus 76 i~sG~~--PTG~lHLGh~v~~~~~~~l-Q~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt-- 150 (392)
T 3jxe_A 76 LYTGRG--PSGPMHIGHIIPFFATKWL-QEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKT-- 150 (392)
T ss_dssp EEEEEC--CSSCCBHHHHHHHHHHHHH-HHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSE--
T ss_pred EEeccC--CCCchhHHHHHHHHHHHHH-HHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccce--
Confidence 445555 55999999999986 7884 34467755444444 2 21 1223455556777778889998753
Q ss_pred CCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceE
Q 008289 127 VGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTY 206 (571)
Q Consensus 127 ~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~i 206 (571)
-.|.||+-.+ |.+.+-.|- |.+|-.++.+.- + |.
T Consensus 151 -----~i~~qS~~~~-~~~~~~~l~-------~~~t~~~~~~~~------~----~~----------------------- 184 (392)
T 3jxe_A 151 -----FIFQNSEFTK-IYEMAIPIA-------KKINFSMAKAVF------G----FT----------------------- 184 (392)
T ss_dssp -----EEEETTTSTH-HHHHHHHHH-------HHSBHHHHHHHH------C----CC-----------------------
T ss_pred -----EEEECchhHH-HHHHHHHHH-------hhCCHHHHhhhh------c----cC-----------------------
Confidence 2689999887 545555552 444544442210 0 00
Q ss_pred EEecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcC-CCcEEEeCCCCCCCHHHHHHHHHHhCC
Q 008289 207 RFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATM-AISHVIRAEEHLPNTLRQALIYKALGF 285 (571)
Q Consensus 207 R~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m-~ItHVIRG~Dhl~ntp~q~~l~~alg~ 285 (571)
+ .+ +-|..+|-.--+.|-... .-++|.-|.|-..+--.=.-+.+.+|+
T Consensus 185 ------~-~~------------------------~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~hl~l~Rdla~r~n~ 233 (392)
T 3jxe_A 185 ------E-QS------------------------KIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGY 233 (392)
T ss_dssp ------T-TS------------------------BHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHHHHHHHHHTGGGTS
T ss_pred ------C-CC------------------------chHHHHHHHHHHhhHHhhcCCceeecccchHHHHHHHHHHHHHcCC
Confidence 0 00 112344444444444444 357888999866433333345567898
Q ss_pred CCCcEEEeeeeecCCC--CcccccCCC--CchHHHHHCCCCHHHHHHHHHH
Q 008289 286 SMPYFAHVSLILAPDR--SKLSKRHGA--TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 286 ~~P~f~H~pli~~~~g--~KLSKR~g~--~~v~~~r~~G~~Peai~n~l~~ 332 (571)
+.|.-.|.|+|.+.+| +||||+.++ +.+.+ .|+.|..-+..
T Consensus 234 ~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D------~p~~I~kKI~k 278 (392)
T 3jxe_A 234 YKTAALHSKFVPSLTSLSGKMSASKPETAIYLTD------SPEDVEKKVWK 278 (392)
T ss_dssp CCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTTC------CHHHHHHHHHT
T ss_pred CCCeeeecccccCCCCCccccccCCCCCeeeCCC------CHHHHHHHHHh
Confidence 8999899999999998 599999865 44443 67777766644
No 46
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=97.84 E-value=0.00011 Score=77.83 Aligned_cols=78 Identities=10% Similarity=0.071 Sum_probs=56.1
Q ss_pred hhcC-C-CcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCC-cccccC--CCCchHHHHHCCCCHHHHHHH
Q 008289 255 DATM-A-ISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRS-KLSKRH--GATSVGQFREMGYLPQAMVNY 329 (571)
Q Consensus 255 D~~m-~-ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~-KLSKR~--g~~~v~~~r~~G~~Peai~n~ 329 (571)
|.+. + -++|--|.|-..+--.=.-+.+.+|.+.|...|.|+|.+.+|. ||||++ +++.+.+ .|+.|..-
T Consensus 218 dil~~~~a~~VpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D------~p~~i~kK 291 (386)
T 3hzr_A 218 HFFSSPARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGVTKFDIPSDHNSILLSD------NAKQVERK 291 (386)
T ss_dssp TTCSSCCEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTTCTTCCCCCCTTTSCBTTC------CHHHHHHH
T ss_pred HhhCCCCccccccccchHHHHHHHHHHHHHcCCCCceEeecCeeeCCCCCCccCcCCCCCeeecCC------CHHHHHHH
Confidence 5543 2 3566679886644434455667899998988899999999995 999994 3466655 89999988
Q ss_pred HHHhCCCCC
Q 008289 330 LALLGWGDG 338 (571)
Q Consensus 330 l~~lG~~~~ 338 (571)
+...-.+++
T Consensus 292 I~k~A~t~g 300 (386)
T 3hzr_A 292 INKLAFSGG 300 (386)
T ss_dssp HHHTSCCCC
T ss_pred HHHhccCCC
Confidence 887655443
No 47
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=97.84 E-value=0.00017 Score=76.68 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=44.2
Q ss_pred CC-cEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCC--CcccccCCC--CchHHHHHCCCCHHHHHHHHHHh
Q 008289 259 AI-SHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDR--SKLSKRHGA--TSVGQFREMGYLPQAMVNYLALL 333 (571)
Q Consensus 259 ~I-tHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g--~KLSKR~g~--~~v~~~r~~G~~Peai~n~l~~l 333 (571)
+| ++|.-|.|-..+--.-.-+.+.+|.+.|...|.|+|.+.+| +||||+.++ +.+.+ .|+.|..-+...
T Consensus 219 di~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D------~p~~i~kKI~k~ 292 (393)
T 3hv0_A 219 DIHCLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVND------NEESIRNKIMKY 292 (393)
T ss_dssp CCCEEEEEEGGGHHHHHHHHHHTGGGTCCCCEEEEECCCCC-------------CCCCBTTC------CHHHHHHHHHHH
T ss_pred CCceecccccchHHHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEeccC------CHHHHHHHHHhh
Confidence 34 58889999765443334555678999999999999999999 799999864 56654 788888888764
Q ss_pred CCC
Q 008289 334 GWG 336 (571)
Q Consensus 334 G~~ 336 (571)
-.+
T Consensus 293 A~t 295 (393)
T 3hv0_A 293 AFS 295 (393)
T ss_dssp SCC
T ss_pred ccC
Confidence 333
No 48
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=97.79 E-value=2.7e-05 Score=90.73 Aligned_cols=94 Identities=23% Similarity=0.269 Sum_probs=71.0
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------------ccCcHHHHHHHHHHHHHc
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL----------------ERSTKESEEAVLQDLSWL 117 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~----------------~R~~~~~~~~i~~~L~wl 117 (571)
+.+=-.|.|||.|||||+|+.++-..+||. ..|.-++.+-.+|. ......+.+.+.++|+.|
T Consensus 36 ~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~L 115 (878)
T 2v0c_A 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLM 115 (878)
T ss_dssp EEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 334345999999999999999999888885 44776666555543 123467889999999999
Q ss_pred CCCCC--CCCCCCCCccceecc--ccHHHHHHHHHHHHHcCCccc
Q 008289 118 GLDWD--EGPGVGGDYGPYRQS--ERNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 118 Gl~~D--egp~~~g~~gpy~QS--er~~~Y~~~a~~Li~~G~AY~ 158 (571)
|+..| . +|+.+ ++.+.-+....+|.++|++|+
T Consensus 116 Gi~~Dw~~---------~~~T~d~~~~~~v~~~f~~L~~kGliY~ 151 (878)
T 2v0c_A 116 GILYDWDR---------EVTTCEPEYYRWNQWIFLKMWEKGLAYR 151 (878)
T ss_dssp TCCCCGGG---------CCBTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCcCC---------CeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 98755 3 34433 466677788999999999997
No 49
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=97.79 E-value=2.9e-05 Score=89.71 Aligned_cols=97 Identities=23% Similarity=0.136 Sum_probs=70.6
Q ss_pred ceEEEeCCCCCCcCchhhHHHHHHHHHHHH--HcCCeEEEEecCCCcc--------------------------------
Q 008289 55 QVRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDLE-------------------------------- 100 (571)
Q Consensus 55 ~vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar--~~~G~fiLRieDTD~~-------------------------------- 100 (571)
-+.+--+|.|||.|||||+|++++...+|| ...|.-++++=-+|..
T Consensus 36 ~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~ 115 (810)
T 1wkb_A 36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEI 115 (810)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHH
T ss_pred EEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHH
Confidence 366777889999999999999999999999 5668888886432221
Q ss_pred --------cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccceeccccHH----HHHHHHHHHHHcCCccc
Q 008289 101 --------RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSERNS----LYKQYADKLLESGHVYR 158 (571)
Q Consensus 101 --------R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~QSer~~----~Y~~~a~~Li~~G~AY~ 158 (571)
.....+.+.+.+++++||+..|=. .+|+.+++.. .-+....+|.++|.+|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~-------~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~ 178 (810)
T 1wkb_A 116 LWTFEDPINIVKYFMKAAKETFIRAGFSVDWS-------REFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (810)
T ss_dssp HHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGG-------GCCBCSTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCeEEecC-------CceEecCCchHHHHHHHHHHHHHHHCCCEEE
Confidence 112345588999999999865510 1466666323 33566788999999987
No 50
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=97.67 E-value=9.1e-05 Score=86.19 Aligned_cols=93 Identities=25% Similarity=0.343 Sum_probs=69.9
Q ss_pred EEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------------ccCcHHHHHHHHHHHHHcC
Q 008289 57 RVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL----------------ERSTKESEEAVLQDLSWLG 118 (571)
Q Consensus 57 r~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~----------------~R~~~~~~~~i~~~L~wlG 118 (571)
.+=-.|.|||.|||||+|++++-..+||. ..|.-++..-.+|. .....++.+.|.++|+.||
T Consensus 57 v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~LG 136 (880)
T 4arc_A 57 CLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLG 136 (880)
T ss_dssp EEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 33346899999999999999999999985 45776775544443 1124567889999999999
Q ss_pred CCCC--CCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCccc
Q 008289 119 LDWD--EGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 119 l~~D--egp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (571)
+..| . +|+.++ +...-+....+|.++|++|.
T Consensus 137 is~Dw~~---------~~~T~d~~~~~~v~~~f~~L~ekGliY~ 171 (880)
T 4arc_A 137 FGYDWSR---------ELATCTPEYYRWEQKFFTELYKKGLVYK 171 (880)
T ss_dssp CCCCGGG---------CEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCcCCCC---------CEEcCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 8765 3 355543 55666778889999999998
No 51
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=97.63 E-value=0.00019 Score=77.18 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=65.1
Q ss_pred ccccchhhhHhhhcC----CCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCCcccccCCC--CchHHHH
Q 008289 244 QPVYNFCVTVDDATM----AISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGA--TSVGQFR 317 (571)
Q Consensus 244 ~PtY~fA~vVDD~~m----~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g~--~~v~~~r 317 (571)
..+|-.--+.|=... +.++++-|.|-..|.-.-.-|.+.+|..+|.-.+.|+|.+.+|+||||+.++ +.+.+
T Consensus 168 ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~nsaI~L~d-- 245 (432)
T 2jan_A 168 EFSYLLLQANDYVELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGGGSLWLDP-- 245 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSSCBCBSST--
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcCcCCCCCCCCeEEccC--
Confidence 456666666666666 9999999999988776667777888887777789999999999999999887 33432
Q ss_pred HCCCCHHHHHHHHHH
Q 008289 318 EMGYLPQAMVNYLAL 332 (571)
Q Consensus 318 ~~G~~Peai~n~l~~ 332 (571)
.=..|..+..++..
T Consensus 246 -~~tsp~~i~qki~~ 259 (432)
T 2jan_A 246 -QMTSPYAWYQYFVN 259 (432)
T ss_dssp -TTSCHHHHHHHHHT
T ss_pred -CCCCHHHHHHHHhc
Confidence 23467777777753
No 52
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=97.59 E-value=0.00066 Score=71.05 Aligned_cols=200 Identities=16% Similarity=0.172 Sum_probs=117.9
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----C-Ccc----cCcHHHHHHHHHHHHHcCCCCCCCCC
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----T-DLE----RSTKESEEAVLQDLSWLGLDWDEGPG 126 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD----T-D~~----R~~~~~~~~i~~~L~wlGl~~Degp~ 126 (571)
+-+=|- |||.|||||.-.++.+|..-...|.+.+.=|-| | |+. ....+....+..++.-+|++++..
T Consensus 43 vy~G~~--PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~-- 118 (348)
T 2j5b_A 43 AYNGFE--PSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGT-- 118 (348)
T ss_dssp EEEEEC--CCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGE--
T ss_pred EEeccC--CCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccce--
Confidence 444454 559999999667788888777777777776655 1 331 223455566777777889987642
Q ss_pred CCCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceE
Q 008289 127 VGGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTY 206 (571)
Q Consensus 127 ~~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~i 206 (571)
..|.||+-...+..+..-++ |....-.+..+. .. ..+
T Consensus 119 -----~i~~qs~~~~~~~~~~~~~~-------~v~~~~~~~~m~------~~-~~~------------------------ 155 (348)
T 2j5b_A 119 -----RFIWASEFIASNPSYIERML-------DIAEFSTISRVK------RC-CQI------------------------ 155 (348)
T ss_dssp -----EEEEHHHHHHHCHHHHHHHH-------HHHHHHHHHHHT------C-----------------------------
T ss_pred -----EEEECCHhhhhhhHHHHHHH-------HHHhheeHHHHH------hh-hhh------------------------
Confidence 25788873211111111111 111111121111 00 000
Q ss_pred EEecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcC---CCcEEEeCCCCCCCHHHHHHHHHHh
Q 008289 207 RFRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATM---AISHVIRAEEHLPNTLRQALIYKAL 283 (571)
Q Consensus 207 R~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m---~ItHVIRG~Dhl~ntp~q~~l~~al 283 (571)
.|+.. +|.+ +-|..+|-.--+.|=... +.++|+-|.|-..+--.=.-+.+.+
T Consensus 156 ----------------~~r~~------~~~i---~~g~f~YP~lQaaDil~~~~~~~~~~~~G~DQ~~~i~l~Rdia~r~ 210 (348)
T 2j5b_A 156 ----------------MGRNE------SDCL---KASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDR 210 (348)
T ss_dssp --------------------------------------CCHHHHHHHHHHHSSTTCCSEECCBGGGHHHHHHHHHHHHHT
T ss_pred ----------------hhhhc------cCCc---ChHHHhhHHHHHHHHHHHhcCCCcEEEeccChHHHHHHHHHHHHHh
Confidence 00000 0000 224567776667676667 8999999999765543334556789
Q ss_pred CCCCCcEEEeeeeecC-CC-CcccccCC--CCchHHHHHCCCCHHHHHHHHHHh
Q 008289 284 GFSMPYFAHVSLILAP-DR-SKLSKRHG--ATSVGQFREMGYLPQAMVNYLALL 333 (571)
Q Consensus 284 g~~~P~f~H~pli~~~-~g-~KLSKR~g--~~~v~~~r~~G~~Peai~n~l~~l 333 (571)
|...|...|.|+|.+. +| +||||+.+ ++.+.+ .|+.|..-+...
T Consensus 211 ~~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d------~p~~i~kKI~ka 258 (348)
T 2j5b_A 211 GLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD------TEQEVSEKISRA 258 (348)
T ss_dssp TCCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC------CHHHHHHHHHHS
T ss_pred CCCCceeecCccccCCCCcccccccCCCCCeEeecC------CHHHHHHHHhcc
Confidence 9988998999999998 67 69999973 466665 788888877763
No 53
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=97.58 E-value=0.00043 Score=73.82 Aligned_cols=73 Identities=19% Similarity=0.108 Sum_probs=54.6
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCC--CcccccCC--CCchHHHHHCCCCHHHHHHHHHHhC
Q 008289 259 AISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDR--SKLSKRHG--ATSVGQFREMGYLPQAMVNYLALLG 334 (571)
Q Consensus 259 ~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g--~KLSKR~g--~~~v~~~r~~G~~Peai~n~l~~lG 334 (571)
+.++|.-|.|-..+--.=.-+.+.+|++.|...|.|+|.+.+| +||||+.+ ++.+.+ .|+.|..-+...-
T Consensus 243 ~a~lvpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D------~p~~I~kKI~k~A 316 (406)
T 3tze_A 243 AMCLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDD------AQDTIRKKIIAYA 316 (406)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTC------CHHHHHHHHHHHC
T ss_pred CCeEEeeccchHHHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCCC------CHHHHHHHHHhhc
Confidence 5678889998765443444566789999999899999999999 69999973 466655 7888887776633
Q ss_pred CCC
Q 008289 335 WGD 337 (571)
Q Consensus 335 ~~~ 337 (571)
.++
T Consensus 317 ~td 319 (406)
T 3tze_A 317 YSG 319 (406)
T ss_dssp CCC
T ss_pred cCC
Confidence 433
No 54
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=97.56 E-value=2.5e-05 Score=90.47 Aligned_cols=100 Identities=23% Similarity=0.263 Sum_probs=75.5
Q ss_pred EeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc---------c------------------------Cc
Q 008289 59 RFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE---------R------------------------ST 103 (571)
Q Consensus 59 RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~---------R------------------------~~ 103 (571)
==.|.|||.|||||+++.++...+||. ..|.-++++-.+|.- + ..
T Consensus 44 ~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~ 123 (821)
T 1ile_A 44 EGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESV 123 (821)
T ss_dssp CCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHT
T ss_pred cCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHH
Confidence 346799999999999999999999994 567777777766641 1 12
Q ss_pred HHHHHHHHHHHHHcC--CCCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCccc------------ccCCHHHHH
Q 008289 104 KESEEAVLQDLSWLG--LDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR------------CFCSNEELE 167 (571)
Q Consensus 104 ~~~~~~i~~~L~wlG--l~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~------------Cfcs~eel~ 167 (571)
.++.+.+.+.+++|| ++||. +|+.++ +.+.-+....+|.++|++|+ .+++.+|+.
T Consensus 124 ~~~~~~~~~~~~~lg~~~dwd~---------~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~ 194 (821)
T 1ile_A 124 FTYEKEWEAFTERIAYWVDLED---------AYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVA 194 (821)
T ss_dssp TTTHHHHTTHHHHTTCCCEEEE---------EEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHH
T ss_pred HHHHHHHHHHHHHhCCeEccCC---------CeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHhh
Confidence 256778999999999 89996 566664 33344556679999999998 467777774
No 55
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=97.53 E-value=0.00041 Score=74.71 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=51.1
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCC--CcccccCCC--CchHHHHHCCCCHHHHHHHHHH
Q 008289 260 ISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDR--SKLSKRHGA--TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 260 ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g--~KLSKR~g~--~~v~~~r~~G~~Peai~n~l~~ 332 (571)
-++|--|.|-..|--.=.-+.+.+|++.|...|.|+|.+.+| +||||+.++ +.+.+ .|+.|.+-+..
T Consensus 257 ~~lVpvG~DQ~~~i~l~Rdla~r~~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D------~p~~I~kKI~~ 327 (437)
T 1r6u_A 257 QCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTD------TAKQIKTKVNK 327 (437)
T ss_dssp EEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTTC------CHHHHHHHHHH
T ss_pred ceEEEeehhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCccccCCCCCCCeeeccC------CHHHHHHHhhc
Confidence 367778998765543334455778988899899999999999 899999876 55554 68888887765
No 56
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=97.51 E-value=0.0021 Score=67.89 Aligned_cols=85 Identities=9% Similarity=0.023 Sum_probs=64.2
Q ss_pred CccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCC-CCcEEEeeeeecC-CCC-cccccCC--CCchHHHH
Q 008289 243 GQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFS-MPYFAHVSLILAP-DRS-KLSKRHG--ATSVGQFR 317 (571)
Q Consensus 243 G~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~-~P~f~H~pli~~~-~g~-KLSKR~g--~~~v~~~r 317 (571)
|..+|-.--+.|-...+.++|+-|.|-..+--.=.-+.+.+|.. .|.+.|.|+|.+. +|+ ||||+.+ .+.+.+
T Consensus 184 g~f~YPlLQaaDil~l~ad~vpgG~DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D-- 261 (373)
T 3vgj_A 184 SQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDD-- 261 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECCBGGGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC--
T ss_pred HHHHHHHHHHhcccccCCcEEEcchhhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCeeecCC--
Confidence 45677777777888889999999999764433334556778876 5888899999995 885 9999984 466654
Q ss_pred HCCCCHHHHHHHHHHh
Q 008289 318 EMGYLPQAMVNYLALL 333 (571)
Q Consensus 318 ~~G~~Peai~n~l~~l 333 (571)
.|+.|..-+...
T Consensus 262 ----~p~~i~~KI~kA 273 (373)
T 3vgj_A 262 ----SESDVNRKIKKA 273 (373)
T ss_dssp ----CHHHHHHHHHHS
T ss_pred ----CHHHHHHHHHhC
Confidence 788888888663
No 57
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=97.48 E-value=0.0027 Score=67.06 Aligned_cols=195 Identities=19% Similarity=0.175 Sum_probs=107.7
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCcccC----cHHHHHHHHHHHHHcCCCCCCCCCC
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLERS----TKESEEAVLQDLSWLGLDWDEGPGV 127 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD----TD~~R~----~~~~~~~i~~~L~wlGl~~Degp~~ 127 (571)
|-+=+. |||.|||||.-.++.++.+ .+.|...+.=|-| |.+.-. ...+......++-.+||+++..-
T Consensus 73 v~sG~~--PTG~lHLGhyv~~~~~~~l-q~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~-- 147 (372)
T 3a04_A 73 VLTGFM--PSGKFHFGHKLTVDQLIYL-QKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTE-- 147 (372)
T ss_dssp EEEEEC--CCSCCBHHHHHHHHHHHHH-HHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCE--
T ss_pred EEeCcC--CCcHhHHHHHHHHHHHHHH-HhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcc--
Confidence 444454 5799999999866655444 4567777766666 222211 23444555667778899988642
Q ss_pred CCCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEE
Q 008289 128 GGDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYR 207 (571)
Q Consensus 128 ~g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR 207 (571)
.|+||+...-|.+.+..+ .|..+-.+++... + ..+.....
T Consensus 148 -----if~qS~~~~~~~~l~~~~-------~~~~~~~~~~~~~------~----------~~~~~~~~------------ 187 (372)
T 3a04_A 148 -----FYFQTNRGTPYFRLIQLF-------SGKVTAAEMEAIY------G----------ELTPAKMM------------ 187 (372)
T ss_dssp -----EEEGGGSCHHHHHHHHHH-------TTSSCHHHHHHHH------S----------SCCHHHHH------------
T ss_pred -----hhhhccchHHHHHHHHHH-------HhhhhHHHHhhhh------h----------ccCccccc------------
Confidence 689998655454443332 3555655554321 0 00111100
Q ss_pred EecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhC---
Q 008289 208 FRVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG--- 284 (571)
Q Consensus 208 ~k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg--- 284 (571)
.+.-.--|.++...|-...| +=+||=.|.|-..+--.-.-|.+.||
T Consensus 188 --------------------yP~lqAaDil~~~~d~~~gy-----------~a~~VPVG~DQ~~hleltRdiA~rfn~~~ 236 (372)
T 3a04_A 188 --------------------ASLTQAADILHVQLDEYGGY-----------RHVVVPVGADQDPHLRLTRDLADRMAGVV 236 (372)
T ss_dssp --------------------HHHHHHHHHHGGGSGGGTCC-----------CCEEEEEEGGGHHHHHHHHHHHHHTTTTS
T ss_pred --------------------CCcchhHHHhhhcCccccCc-----------cceecccchhhHHHHHHHHHHHHHhcCcc
Confidence 00000001111111111111 23577789985422212223344565
Q ss_pred -CCCCcEEEeeeeecCCCCcccccCCC--CchHHHHHCCCCHHHHHHHHHH
Q 008289 285 -FSMPYFAHVSLILAPDRSKLSKRHGA--TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 285 -~~~P~f~H~pli~~~~g~KLSKR~g~--~~v~~~r~~G~~Peai~n~l~~ 332 (571)
++.|.-.|.+++-..+|.||||...+ +.+.+ .|+.|.+=+..
T Consensus 237 ~~~~P~~~~~~~~pgldG~KmS~S~~ns~I~l~D------~p~~i~kKI~k 281 (372)
T 3a04_A 237 ELERPASTYHKLQPGLDGRKMSSSRPDSTIFLTD------PPEVARNKLFR 281 (372)
T ss_dssp CCCCCEEEEECCCBCTTSSBCCTTSGGGSCBTTC------CHHHHHHHHHT
T ss_pred cccChhhhhhcccCCCCCCccCCCCCCcccccCC------CHHHHHHHHhc
Confidence 67788899999888999999999865 34433 68888877765
No 58
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=97.44 E-value=0.0002 Score=74.23 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=60.3
Q ss_pred CccccchhhhHhhhcC----CCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCCcccccCCC-CchHHHH
Q 008289 243 GQPVYNFCVTVDDATM----AISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFR 317 (571)
Q Consensus 243 G~PtY~fA~vVDD~~m----~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g~-~~v~~~r 317 (571)
|..+|-.--+.|=... +.+.++=|.|-..+.-.-.-|.+.+|...|.-.+.|+|.+.+|+||||+.++ +.+.+
T Consensus 171 g~f~YP~LQaaDil~l~~~~~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gldG~KMSKS~~n~I~L~d-- 248 (322)
T 2yxn_A 171 TEFSYNLLQGYDFACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGGAVWLDP-- 248 (322)
T ss_dssp HHHTHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTEETTEECBSST--
T ss_pred hhhhHHHHHHHHHHHHhccCCceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCCCcccccCCCCCeeeccC--
Confidence 3455555555555555 7887777999887666666677888877676678999999999999999876 34433
Q ss_pred HCCCCHHHHHHHHH
Q 008289 318 EMGYLPQAMVNYLA 331 (571)
Q Consensus 318 ~~G~~Peai~n~l~ 331 (571)
.=..|+.+..++.
T Consensus 249 -~~tsp~~~~~ki~ 261 (322)
T 2yxn_A 249 -KKTSPYKFYQFWI 261 (322)
T ss_dssp -TTSCHHHHHHHHH
T ss_pred -CCCCHHHHHHHHh
Confidence 2245666666654
No 59
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=97.42 E-value=0.00015 Score=84.85 Aligned_cols=94 Identities=21% Similarity=0.361 Sum_probs=70.4
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCc--------------c--------------cCcHH
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL--------------E--------------RSTKE 105 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~--------------~--------------R~~~~ 105 (571)
+.+==+|.|||.|||||+++.++-..+||. ..|.-++.+-.+|. . ....+
T Consensus 51 ~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~ 130 (917)
T 1ffy_A 51 ILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALE 130 (917)
T ss_dssp CEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHH
T ss_pred eeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHH
Confidence 344456899999999999999999999986 44666655544432 1 12456
Q ss_pred HHHHHHHHHHHcCC--CCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCccc
Q 008289 106 SEEAVLQDLSWLGL--DWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 106 ~~~~i~~~L~wlGl--~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (571)
+++.+.+.++.||+ +||. +|+.++ +...-+....+|.++|++|+
T Consensus 131 ~~~~~~~~~~rlG~~~Dwd~---------~~~T~d~~~~~~v~~~F~~l~~kGliYr 178 (917)
T 1ffy_A 131 QIELQKKDFRRLGVRGDFND---------PYITLKPEYEAAQIRIFGEMADKGLIYK 178 (917)
T ss_dssp HHHHHHHHHHTTTCCSCTTS---------CEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhCeEEccCC---------CeEcCCHHHHHHHHHHHHHHHHcCCeEe
Confidence 78999999999999 5886 577664 44455677789999999998
No 60
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=97.38 E-value=0.00026 Score=82.41 Aligned_cols=96 Identities=25% Similarity=0.278 Sum_probs=72.9
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCcc------------------cC-------------
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDLE------------------RS------------- 102 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD~~------------------R~------------- 102 (571)
+.+=-+|.|||.|||||+++.++-..++|. ..|.-++.+-.+|.. +.
T Consensus 37 ~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~ 116 (862)
T 1gax_A 37 VIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQ 116 (862)
T ss_dssp EEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHH
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHH
Confidence 444456899999999999999999999996 568888877666641 11
Q ss_pred -cHHHHHHHHHHHHHcCCCCCCCCCCCCCccceeccc--cHHHHHHHHHHHHHcCCccc
Q 008289 103 -TKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQSE--RNSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 103 -~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~QSe--r~~~Y~~~a~~Li~~G~AY~ 158 (571)
+.++.+.|.+.++.||+..|-. .+|+.++ +.+.-+....+|.++|.+|+
T Consensus 117 ~~~~~~~~~~~q~~rlG~s~Dw~-------r~~~T~d~~~~~~v~~~F~~L~~kGliYr 168 (862)
T 1gax_A 117 WKEESGGTILKQLKRLGASADWS-------REAFTMDEKRSRAVRYAFSRYYHEGLAYR 168 (862)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGG-------GCEETTSHHHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHHHHhCccccCC-------CCcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 3677899999999999765421 1466553 55566778889999999998
No 61
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=97.37 E-value=0.0015 Score=70.57 Aligned_cols=69 Identities=12% Similarity=0.090 Sum_probs=49.3
Q ss_pred EEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCC--cccccCCC--CchHHHHHCCCCHHHHHHHHHHhCCC
Q 008289 262 HVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRS--KLSKRHGA--TSVGQFREMGYLPQAMVNYLALLGWG 336 (571)
Q Consensus 262 HVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~--KLSKR~g~--~~v~~~r~~G~~Peai~n~l~~lG~~ 336 (571)
+|--|.|-..+--.-.-+.+.||.+.|...|.|+|.+.+|. ||||+.++ +.+.+ .|+.|..-+...-.+
T Consensus 290 ~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D------~p~~I~kKI~k~A~T 362 (451)
T 3foc_A 290 LIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTD------TPAQIKNKINRYAFS 362 (451)
T ss_dssp EEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTC------CHHHHHHHHHHHSCC
T ss_pred eeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeecC------CHHHHHHHHhhhccC
Confidence 67789986533222234445789988998999999998885 99999875 44543 788888888764343
No 62
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=97.32 E-value=0.00011 Score=78.26 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=41.5
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCC--CcccccCCC-CchHHHHHCCCCHHHHHHHHHH
Q 008289 260 ISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDR--SKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 260 ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g--~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~ 332 (571)
-++|..|.|-..+--.=.-+.+.+|.+.|...|.|+|.+.+| +||||+.++ +.+.+ .|+.|..-+..
T Consensus 225 ~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D------~p~~i~kKI~k 294 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGTAVLLTD------TEKMVKDKINK 294 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHHHHTCCCCEEEEECCCCCC-------------CCBTTC------CHHHHHHHHC-
T ss_pred ceEEEeccchHHHHHHHHHHHHHcCCCCceeeccccccCCCCCcccCCCCCCCcccCCC------CHHHHHHHHHh
Confidence 567888998665444444566789999999899999999999 799999654 66655 78888777644
No 63
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=97.31 E-value=0.00034 Score=74.20 Aligned_cols=190 Identities=18% Similarity=0.164 Sum_probs=109.0
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc--cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccceec
Q 008289 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE--RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQ 136 (571)
Q Consensus 63 SPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD----TD~~--R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~Q 136 (571)
-|||.|||||.-.++.||..-. .|...++=|-| |++. ....+....+..++.-+||+++.- -.|.|
T Consensus 43 ~PTG~lHLGhyvGal~~~~~LQ-~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt-------~if~q 114 (388)
T 3prh_A 43 QPSGSVTLGNYIGAMKQFVELQ-HDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKA-------TLFIQ 114 (388)
T ss_dssp CCCSCCBHHHHHHTHHHHHHTT-TTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTE-------EEEEG
T ss_pred CCCCcchHHHHHHHHHHHHHHH-ccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHe-------EEEec
Confidence 5779999999999999887543 36665555555 2221 123445556677777799998853 26889
Q ss_pred cccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCce
Q 008289 137 SERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSL 216 (571)
Q Consensus 137 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~ 216 (571)
|+-.+.. +.+-. +-|..+-.+++.+ +.|.
T Consensus 115 S~v~~~~-el~w~-------l~~~~~~~~L~R~----------~~fk--------------------------------- 143 (388)
T 3prh_A 115 SEVPAHA-QAGWM-------MQCVAYIGELERM----------TQFK--------------------------------- 143 (388)
T ss_dssp GGSTHHH-HHHHH-------HHTTSCHHHHHTT----------C------------------------------------
T ss_pred ccccchH-HHHHH-------HHhhccHHHHHhh----------hhHh---------------------------------
Confidence 9876533 33322 3477666665421 1121
Q ss_pred EEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCC-CCcE-EEee
Q 008289 217 KISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFS-MPYF-AHVS 294 (571)
Q Consensus 217 ~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~-~P~f-~H~p 294 (571)
|.+.+. +. -+-|..+|-.--+.|-...+.++|.-|+|-..+--.=.-|.+.||.. .+.| .+.|
T Consensus 144 ---~k~~~~---~~---------~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~ 208 (388)
T 3prh_A 144 ---DKSKGN---EA---------VVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEV 208 (388)
T ss_dssp -------------C---------CBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEE
T ss_pred ---HHhhcc---CC---------CcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHHHHhCcccCCCcccchh
Confidence 100000 00 01245677777777888889999999999663322223344555531 1111 2333
Q ss_pred ee-------ecC-CC-CcccccC---CC-CchHHHHHCCCCHHHHHHHHHH
Q 008289 295 LI-------LAP-DR-SKLSKRH---GA-TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 295 li-------~~~-~g-~KLSKR~---g~-~~v~~~r~~G~~Peai~n~l~~ 332 (571)
+| .+. +| +||||+. ++ +.+.+ .|+.|..=+..
T Consensus 209 li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D------~p~~I~kKI~k 253 (388)
T 3prh_A 209 KIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD------EPKQLEKKIKS 253 (388)
T ss_dssp CCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC------CHHHHHHHHHT
T ss_pred hhcccccccccCCCCCCccCCCCCCCCCeeecCC------CHHHHHHHHhh
Confidence 33 333 44 6999998 33 55544 67777776654
No 64
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=97.21 E-value=0.00055 Score=73.36 Aligned_cols=86 Identities=12% Similarity=0.110 Sum_probs=63.1
Q ss_pred ccccchhhhHhhhcC----CCcEEEeCCCCCCCHHHHHHHHHHh-CCCCCcEEEeeeeecCCCCcccccCCC-CchHHHH
Q 008289 244 QPVYNFCVTVDDATM----AISHVIRAEEHLPNTLRQALIYKAL-GFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFR 317 (571)
Q Consensus 244 ~PtY~fA~vVDD~~m----~ItHVIRG~Dhl~ntp~q~~l~~al-g~~~P~f~H~pli~~~~g~KLSKR~g~-~~v~~~r 317 (571)
..+|-.--+.|=... +.++++-|.|-..|--.=.-|.+.+ |..+|.-.+.|+|.+.+|+||||+.++ +.+.+
T Consensus 166 ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG~KMSKS~~naI~L~d-- 243 (419)
T 2ts1_A 166 EFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDK-- 243 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSCCCBSST--
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCcccccCCCCCeEecCC--
Confidence 356666666666666 9999999999887766666677888 877777789999999999999999876 44432
Q ss_pred HCCCCHHHHHHHHHH
Q 008289 318 EMGYLPQAMVNYLAL 332 (571)
Q Consensus 318 ~~G~~Peai~n~l~~ 332 (571)
.=..|..+..++..
T Consensus 244 -~~tsp~~i~qki~~ 257 (419)
T 2ts1_A 244 -EKTSPYEFYQFWIN 257 (419)
T ss_dssp -TTSCHHHHHHHHHT
T ss_pred -CCCCHHHHHHHHhc
Confidence 23467778777754
No 65
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=97.19 E-value=0.00022 Score=84.05 Aligned_cols=88 Identities=15% Similarity=0.049 Sum_probs=57.1
Q ss_pred CCCcEEEeCCCCCCC-HHHHHHHHHH-hCC-CCC-cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHH
Q 008289 258 MAISHVIRAEEHLPN-TLRQALIYKA-LGF-SMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 258 m~ItHVIRG~Dhl~n-tp~q~~l~~a-lg~-~~P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~ 332 (571)
+.++..+-|.||+.. .-..++...+ ++. +.| .+.|+++++. +|+||||+.|+ ++..++.++ |-+++++-||+.
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~~-yGaDalR~~ll~ 679 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEE-NGADVVRLYIMS 679 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHHT-TCHHHHHHHHHH
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CCEEccccccCCCCHHHHHHH-hChHHHHHHHHh
Confidence 345656679998742 1111222233 343 234 5678898876 89999999998 788888876 889999999976
Q ss_pred hCCCCCCCcccCCHHHH
Q 008289 333 LGWGDGTENEFFTLKQL 349 (571)
Q Consensus 333 lG~~~~~~~e~~s~~el 349 (571)
.+- ...+-.|+.+.+
T Consensus 680 ~~~--~~~d~~fs~~~~ 694 (967)
T 1wz2_A 680 LAE--HDSDFDWRRKEV 694 (967)
T ss_dssp HCC--TTCCEEECHHHH
T ss_pred CCC--CCCCcccCHHHH
Confidence 552 223344555443
No 66
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=97.13 E-value=0.001 Score=71.37 Aligned_cols=86 Identities=12% Similarity=0.161 Sum_probs=64.7
Q ss_pred ccccchhhhHhhhcC----CCcEEEeCCCCCCCHHHHHHHHHHh-CCCCCcEEEeeeeecCCCCcccccCCC-CchHHHH
Q 008289 244 QPVYNFCVTVDDATM----AISHVIRAEEHLPNTLRQALIYKAL-GFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFR 317 (571)
Q Consensus 244 ~PtY~fA~vVDD~~m----~ItHVIRG~Dhl~ntp~q~~l~~al-g~~~P~f~H~pli~~~~g~KLSKR~g~-~~v~~~r 317 (571)
..+|-.--+.|=... +.++++-|.|-..|--.=.-|.+.+ |..+|.-.+.|+|.+.+|+||||+.++ +.+.+
T Consensus 167 ef~YplLQaaD~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d-- 244 (420)
T 1jil_A 167 EFTYTILQAIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLDA-- 244 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSSBCBSST--
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCCCeEecCC--
Confidence 356666666666666 9999999999887666666677888 877777789999999999999999876 44432
Q ss_pred HCCCCHHHHHHHHHH
Q 008289 318 EMGYLPQAMVNYLAL 332 (571)
Q Consensus 318 ~~G~~Peai~n~l~~ 332 (571)
.=..|+.+..++..
T Consensus 245 -~~tsp~~i~~ki~~ 258 (420)
T 1jil_A 245 -EKTSPYEFYQFWIN 258 (420)
T ss_dssp -TTSCHHHHHHHHHT
T ss_pred -CCCCHHHHHHHHhc
Confidence 23467777777753
No 67
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=96.91 E-value=0.00056 Score=71.79 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=51.1
Q ss_pred CccccchhhhHhhhcC----CCcEEEeCCCCCCCHHHHHHHHHHhCCCCCcEEEeeeeecCCCCcccccCCC-CchHHHH
Q 008289 243 GQPVYNFCVTVDDATM----AISHVIRAEEHLPNTLRQALIYKALGFSMPYFAHVSLILAPDRSKLSKRHGA-TSVGQFR 317 (571)
Q Consensus 243 G~PtY~fA~vVDD~~m----~ItHVIRG~Dhl~ntp~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g~-~~v~~~r 317 (571)
|..+|-.--+.|=... +.++|+-|.|-..+.-.=.-|.+.+|..+|.-.+.|+|.+.+|+||||+.++ +.+.+
T Consensus 190 g~f~YPvLQAaDil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d-- 267 (356)
T 2pid_A 190 AEFFYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNR-- 267 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC-------------CCBSST--
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcccccCCCCCeeeccC--
Confidence 4466666666676666 9999999999877665556677888987777789999999999999999765 44432
Q ss_pred HCCCCHHHHHHHHH
Q 008289 318 EMGYLPQAMVNYLA 331 (571)
Q Consensus 318 ~~G~~Peai~n~l~ 331 (571)
.=..|+.|..++.
T Consensus 268 -~~tsp~~i~~ki~ 280 (356)
T 2pid_A 268 -DKTSPFELYQFFV 280 (356)
T ss_dssp -TTSCHHHHHHHHH
T ss_pred -CCCCHHHHHHHHH
Confidence 1235666666554
No 68
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=96.89 E-value=0.0051 Score=69.81 Aligned_cols=85 Identities=11% Similarity=0.060 Sum_probs=65.2
Q ss_pred CccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhCCC-CCcEEEeeeeecC-CCC-cccccCC--CCchHHHH
Q 008289 243 GQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFS-MPYFAHVSLILAP-DRS-KLSKRHG--ATSVGQFR 317 (571)
Q Consensus 243 G~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg~~-~P~f~H~pli~~~-~g~-KLSKR~g--~~~v~~~r 317 (571)
|..+|-.--+.|-...+.++|.-|.|-..+--.=.-+.+.+|.. .|...|.|+|.+. +|+ ||||+.+ ++.+.+
T Consensus 167 g~f~YPlLQAaDil~~~ad~vpvG~DQ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~D-- 244 (690)
T 3p0j_A 167 AQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED-- 244 (690)
T ss_dssp SCSSHHHHHHHHHHHTTCSEECCBGGGHHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTTC--
T ss_pred hhHhhHHHHHHHHHhhCCCEEeccccHHHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeeeccC--
Confidence 56788887888888889999999999765433334556778876 5788899999997 885 9999986 366654
Q ss_pred HCCCCHHHHHHHHHHh
Q 008289 318 EMGYLPQAMVNYLALL 333 (571)
Q Consensus 318 ~~G~~Peai~n~l~~l 333 (571)
.|+.|..-+...
T Consensus 245 ----~p~~i~kKI~~A 256 (690)
T 3p0j_A 245 ----TEEDVARKIRQA 256 (690)
T ss_dssp ----CHHHHHHHHHTS
T ss_pred ----CHHHHHHHHHhC
Confidence 788888888654
No 69
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=96.89 E-value=0.002 Score=68.42 Aligned_cols=87 Identities=14% Similarity=0.094 Sum_probs=57.8
Q ss_pred CccccchhhhHhhhcC----CCcEEEeCCCCCCCHHHHHHHHHHh-----------------CCCCCcEEEeeeeecCCC
Q 008289 243 GQPVYNFCVTVDDATM----AISHVIRAEEHLPNTLRQALIYKAL-----------------GFSMPYFAHVSLILAPDR 301 (571)
Q Consensus 243 G~PtY~fA~vVDD~~m----~ItHVIRG~Dhl~ntp~q~~l~~al-----------------g~~~P~f~H~pli~~~~g 301 (571)
|..+|-.--+.|=... +.++|+-|.|-..|.-.=+-|.+.+ |+..|.-.+.|+|.+.+|
T Consensus 212 gef~YPlLQAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG 291 (392)
T 1y42_X 212 AEFTYPIMQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSG 291 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTC
T ss_pred HHHHHHHHHHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCch
Confidence 3466666666665545 7999999999866544434443333 224566679999999999
Q ss_pred CcccccCCC-CchHHHHHCCCCHHHHHHHHHH
Q 008289 302 SKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 302 ~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~ 332 (571)
+||||+.++ +.+.+ .=-.|..+..|+..
T Consensus 292 ~KMSKS~~naI~L~d---~~tsp~~i~qki~~ 320 (392)
T 1y42_X 292 AKFGKSAGNAIWLDP---YQTSVFDFYGYFVR 320 (392)
T ss_dssp CBTTBCSSSBCBSST---TTSCHHHHHHHHHT
T ss_pred hhccCCCCCeeeccC---CCCCHHHHHHHHHc
Confidence 999999876 44432 12467777777653
No 70
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=96.79 E-value=0.0022 Score=67.07 Aligned_cols=195 Identities=18% Similarity=0.176 Sum_probs=112.2
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----C---CcccCcHHHHHHHHHHHHHcCCCCCCCCCCC
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----T---DLERSTKESEEAVLQDLSWLGLDWDEGPGVG 128 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD----T---D~~R~~~~~~~~i~~~L~wlGl~~Degp~~~ 128 (571)
+-+=|. |||.|||||.-.++-||..- +.+...++=|-| | |++ ...+....+..++.-+||+++.-
T Consensus 18 i~sG~~--PTG~lHLGh~vg~l~~~~~l-Q~~~~~~~~iaD~hA~t~~~~~~-~~~~~~~~~~~~~lA~GlDp~k~---- 89 (346)
T 3n9i_A 18 VFSGAQ--PSGELTIGNYMGALRQWVQM-QDDYDCIYCIVDLHAITARQDPA-LLRKRTLDTLALYLACGIDPKKS---- 89 (346)
T ss_dssp EEEEEC--SCSCCBHHHHHHTHHHHHTT-TTTSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHHTCCTTTS----
T ss_pred EEECcC--CCCcccHHHHHHHHHHHHHH-HhhCcEEEEEecceeecCCCCHH-HHHHHHHHHHHHHHHcCCCccce----
Confidence 444444 66999999999888888532 334555554444 2 222 23455566777777899998853
Q ss_pred CCccceeccccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEE
Q 008289 129 GDYGPYRQSERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRF 208 (571)
Q Consensus 129 g~~gpy~QSer~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~ 208 (571)
-.|.||+-.+...- .- .+.|.++.-+++.+.+.. .+.....
T Consensus 90 ---~if~qS~v~~~~el-~~-------~l~~~~~~~~l~R~~~~k----------------------~~~~~~~------ 130 (346)
T 3n9i_A 90 ---TIFVQSHVPEHSQL-SW-------ALNCYTYFGELSRMTQFK----------------------DKSARYA------ 130 (346)
T ss_dssp ---EEEEGGGCTHHHHH-HH-------HHHTTSBHHHHHTCHHHH----------------------HHHHHSG------
T ss_pred ---EEEeccccccchHH-HH-------HHHHHhhHHHHHHHHHHH----------------------HHHhccC------
Confidence 26899986554322 11 135777777776443110 0000000
Q ss_pred ecCCCCceEEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhC----
Q 008289 209 RVPKGGSLKISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG---- 284 (571)
Q Consensus 209 k~~~~~~~~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg---- 284 (571)
..+ +-|..+|-.--+.|-...+.++|.-|.|-..+--.=.-+.+.||
T Consensus 131 -----~~~------------------------~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRdia~rfn~~yg 181 (346)
T 3n9i_A 131 -----ENI------------------------NAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNLYG 181 (346)
T ss_dssp -----GGC------------------------BHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHHHHHHHHHS
T ss_pred -----CCC------------------------CchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHHHHHHhccccC
Confidence 000 12445666666777788899999999996533222223344454
Q ss_pred --CCCCcEE---EeeeeecC-CCC-cccccCCC----CchHHHHHCCCCHHHHHHHHHH
Q 008289 285 --FSMPYFA---HVSLILAP-DRS-KLSKRHGA----TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 285 --~~~P~f~---H~pli~~~-~g~-KLSKR~g~----~~v~~~r~~G~~Peai~n~l~~ 332 (571)
+..|.-. |.+.|.+. +|+ ||||+.++ +.+.+ .|+.|..-+..
T Consensus 182 ~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D------~p~~i~kKI~k 234 (346)
T 3n9i_A 182 DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE------DPKSVVKKIKR 234 (346)
T ss_dssp SCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS------CHHHHHHHHHT
T ss_pred CcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCC------CHHHHHHHHHh
Confidence 1233211 22455555 674 99999863 55544 68888777755
No 71
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=96.79 E-value=0.0012 Score=68.98 Aligned_cols=191 Identities=16% Similarity=0.178 Sum_probs=109.3
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc--cCcHHHHHHHHHHHHHcCCCCCCCCCCCCCccceec
Q 008289 63 SPTGNLHVGGARTALFNYLFARSKGGKFVLRIED----TDLE--RSTKESEEAVLQDLSWLGLDWDEGPGVGGDYGPYRQ 136 (571)
Q Consensus 63 SPtG~LHiG~~rtAl~n~l~Ar~~~G~fiLRieD----TD~~--R~~~~~~~~i~~~L~wlGl~~Degp~~~g~~gpy~Q 136 (571)
-|||.|||||.-.++-+|..-.. +...++=|-| |++. ....+....+..++.-+||+++.- -.|.|
T Consensus 14 ~PTG~lHLGhy~g~l~~~~~lQ~-~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~-------~i~~q 85 (341)
T 3sz3_A 14 QPSGELSIGNYLGALRQWQQMQD-DYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKS-------TLFVQ 85 (341)
T ss_dssp CSSSCCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTS-------EEEEG
T ss_pred CCCCcccHHHHHHHHHHHHHHHh-cCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhc-------EEEec
Confidence 46799999999989888853333 3455444444 2221 223455566777777899998863 26889
Q ss_pred cccHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHhCCCCCCCCCcCCCCCHHHHHHHHhcCCCceEEEecCCCCce
Q 008289 137 SERNSLYKQYADKLLESGHVYRCFCSNEELEKMKEIAKLKQLPPVYTGKWATATDAEVQKELERGTPYTYRFRVPKGGSL 216 (571)
Q Consensus 137 Ser~~~Y~~~a~~Li~~G~AY~Cfcs~eel~~~r~~~~~~~~~~~Y~g~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~ 216 (571)
|+-.+... ..-. ..|.++.-+++.+.+-. +...+...+ +
T Consensus 86 S~v~~~~e-l~~~-------l~~~~~~~~l~R~~~~k-------------------~~~~~~~~~--------------~ 124 (341)
T 3sz3_A 86 SHVPEHAQ-LGWV-------LNCYTQMGELSRMTQFK-------------------DKSARYAND--------------V 124 (341)
T ss_dssp GGCTHHHH-HHHH-------HHTTSCHHHHHTCHHHH-------------------HHHHHHGGG--------------C
T ss_pred cchhhhHH-HHHH-------HHhhccHHHHHHHHHHH-------------------HHHhhccCC--------------C
Confidence 98765432 1111 35778888776543210 000000000 0
Q ss_pred EEEeeccceeeccCCCCCCeEEEecCCccccchhhhHhhhcCCCcEEEeCCCCCCCHHHHHHHHHHhC--CC-------C
Q 008289 217 KISDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALG--FS-------M 287 (571)
Q Consensus 217 ~~~D~v~G~i~~~~~~~~D~Vl~RsdG~PtY~fA~vVDD~~m~ItHVIRG~Dhl~ntp~q~~l~~alg--~~-------~ 287 (571)
+-|..+|-.--+.|-...+.++|.-|.|-..+--.=.-+.+.|| +. .
T Consensus 125 ------------------------~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~ 180 (341)
T 3sz3_A 125 ------------------------NAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTI 180 (341)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCC
T ss_pred ------------------------ChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHHHHhchhccCCCccccc
Confidence 11345666666677778899999999996533222223344454 11 2
Q ss_pred CcE-EE--eeeeecC-CC-CcccccCC----CCchHHHHHCCCCHHHHHHHHHH
Q 008289 288 PYF-AH--VSLILAP-DR-SKLSKRHG----ATSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 288 P~f-~H--~pli~~~-~g-~KLSKR~g----~~~v~~~r~~G~~Peai~n~l~~ 332 (571)
|.- .+ .++|.+. +| +||||+.. .+.+.+ .|+.|..-+..
T Consensus 181 p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D------~p~~i~kKI~~ 228 (341)
T 3sz3_A 181 PEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLE------DPKSIIKKINK 228 (341)
T ss_dssp CEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTC------CHHHHHHHHHT
T ss_pred ChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCC------CHHHHHHHhhh
Confidence 221 11 2445554 57 69999984 355544 67777776655
No 72
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=94.01 E-value=0.085 Score=61.78 Aligned_cols=88 Identities=11% Similarity=0.078 Sum_probs=58.4
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHHH---HhCCCCC-cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHH
Q 008289 258 MAISHVIRAEEHLPNTLRQALIYK---ALGFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 258 m~ItHVIRG~Dhl~ntp~q~~l~~---alg~~~P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~ 332 (571)
+-.+..+-|.||+.. -.|..++. ..|..++ .+..++++++.+|+||||+.|+ ++..++.+. |-+++++-|++.
T Consensus 547 ~P~Dl~~~G~D~~r~-wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~-yGaDalR~~lls 624 (917)
T 1ffy_A 547 FPADMYLEGSDQYRG-WFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQ-KGADIARLWVSS 624 (917)
T ss_dssp SSBSEEEEEGGGGTT-HHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHH-TCHHHHHHHHHT
T ss_pred CCceEEEEEeccccc-HHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHh-CCHHHHHHHHhc
Confidence 445666678888632 22333333 2354332 3444589998999999999998 788888764 889999999986
Q ss_pred hCCCCCCCcccCCHHHHH
Q 008289 333 LGWGDGTENEFFTLKQLV 350 (571)
Q Consensus 333 lG~~~~~~~e~~s~~eli 350 (571)
++...+-.||.+.+.
T Consensus 625 ---~~~~~D~~fs~~~l~ 639 (917)
T 1ffy_A 625 ---TDYLADVRISDEILK 639 (917)
T ss_dssp ---SCTTSCEECCHHHHH
T ss_pred ---cCCCCCcccCHHHHH
Confidence 233344567766553
No 73
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=93.94 E-value=0.11 Score=60.10 Aligned_cols=91 Identities=13% Similarity=0.059 Sum_probs=60.3
Q ss_pred CCCcEEEeCCCCCCCH-HHHHHHHHH-hCCCCC-cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHh
Q 008289 258 MAISHVIRAEEHLPNT-LRQALIYKA-LGFSMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALL 333 (571)
Q Consensus 258 m~ItHVIRG~Dhl~nt-p~q~~l~~a-lg~~~P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~l 333 (571)
+-++..+-|.||+-.= ...+++-.+ .|.++| .+.-++++++.+|+||||+.|+ ++..++.+. |-+++++-||+..
T Consensus 543 ~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~-yGaDalR~~ll~~ 621 (821)
T 1ile_A 543 FPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRK-FGADALRWYIYVS 621 (821)
T ss_dssp SSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTT-TCHHHHHHHHHHH
T ss_pred CCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHH-hCHHHHHHHHHhC
Confidence 4556556788887421 111222233 355443 4556678888899999999998 788888876 8999999999887
Q ss_pred CCCCCCCcccCCHHHHHH
Q 008289 334 GWGDGTENEFFTLKQLVE 351 (571)
Q Consensus 334 G~~~~~~~e~~s~~eli~ 351 (571)
+- ...+-.||.+.+.+
T Consensus 622 ~~--~~~d~~fs~~~l~~ 637 (821)
T 1ile_A 622 AP--PEADRRFGPNLVRE 637 (821)
T ss_dssp SC--SSSCEECCHHHHHH
T ss_pred CC--CCCCcEecHHHHHH
Confidence 62 12335566666543
No 74
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=89.95 E-value=0.62 Score=53.65 Aligned_cols=75 Identities=16% Similarity=0.073 Sum_probs=51.4
Q ss_pred CCCcEEEeCCCCCCC-HHHHHHHHHH-hCC-CCC-cEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHH
Q 008289 258 MAISHVIRAEEHLPN-TLRQALIYKA-LGF-SMP-YFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLAL 332 (571)
Q Consensus 258 m~ItHVIRG~Dhl~n-tp~q~~l~~a-lg~-~~P-~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~ 332 (571)
+.++.-+-|.||+.. .-..+.+..+ ++. +.| .+.|+++++. +|+||||+.|+ ++..++.+. |-+++++-||+.
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~~-yGaDalR~~ll~ 679 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEE-NGADVVRLYIMS 679 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHHH-HCHHHHHHHHHH
T ss_pred CCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHHH-cChHHHHHHHHh
Confidence 456656679998742 1122222233 332 234 4678888776 89999999998 788888775 789999999975
Q ss_pred hC
Q 008289 333 LG 334 (571)
Q Consensus 333 lG 334 (571)
.+
T Consensus 680 ~~ 681 (810)
T 1wkb_A 680 LA 681 (810)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 75
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=89.77 E-value=0.88 Score=53.54 Aligned_cols=94 Identities=23% Similarity=0.189 Sum_probs=67.0
Q ss_pred eEEEeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCC-----------------------------------
Q 008289 56 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTD----------------------------------- 98 (571)
Q Consensus 56 vr~RFAPSPtG~LHiG~~rtAl~n~l~Ar~--~~G~fiLRieDTD----------------------------------- 98 (571)
+.+==.|.|||.|||||+++.++-..+||. ..|.-+|++=..|
T Consensus 37 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~ 116 (967)
T 1wz2_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (967)
T ss_dssp BEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHH
T ss_pred EEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHH
Confidence 445557899999999999999999999985 4576666642211
Q ss_pred -----cccCcHHHHHHHHHHHHHcCCC--CCCCCCCCCCccceecccc----HHHHHHHHHHHHHcCCccc
Q 008289 99 -----LERSTKESEEAVLQDLSWLGLD--WDEGPGVGGDYGPYRQSER----NSLYKQYADKLLESGHVYR 158 (571)
Q Consensus 99 -----~~R~~~~~~~~i~~~L~wlGl~--~Degp~~~g~~gpy~QSer----~~~Y~~~a~~Li~~G~AY~ 158 (571)
+......+.+.+.+.|+.||+. |+. +|..++. .+.-+....+|.++|++|+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r---------~~~T~d~np~y~~~v~~~F~~L~~kGliyr 178 (967)
T 1wz2_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSR---------EFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (967)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTS---------CCBCSTTSHHHHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceEecCC---------CeEECCCChhHHHHHHHHHHHHHHCCCEEE
Confidence 1112345568899999999975 654 5776663 3333456677889999997
No 76
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=89.72 E-value=0.86 Score=52.95 Aligned_cols=90 Identities=19% Similarity=0.111 Sum_probs=57.3
Q ss_pred CCCcEEEeCCCCCCC-HHHHHHHH-HHhCCCC-CcEEEeeeeecCCCCcccccCCC-CchHHHHHCCCCHHHHHHHHHHh
Q 008289 258 MAISHVIRAEEHLPN-TLRQALIY-KALGFSM-PYFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPQAMVNYLALL 333 (571)
Q Consensus 258 m~ItHVIRG~Dhl~n-tp~q~~l~-~alg~~~-P~f~H~pli~~~~g~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~l 333 (571)
+-.+..+=|.|.+-- -.+.+..- ...|..+ -.+.-++++++.+|+||||+.|+ ++..++.+. |-++|++-||+..
T Consensus 480 ~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR~~ll~~ 558 (862)
T 1gax_A 480 YPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVER-YGADALRFALIYL 558 (862)
T ss_dssp CSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHH-HCHHHHHHHHHHH
T ss_pred CCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHH-cChHHHHHHHHhc
Confidence 445555557775532 12222222 2345432 14556688899999999999998 778887775 7799999999876
Q ss_pred CCCCCCCcccCCHHHHH
Q 008289 334 GWGDGTENEFFTLKQLV 350 (571)
Q Consensus 334 G~~~~~~~e~~s~~eli 350 (571)
+- ...+-.|+.+.+.
T Consensus 559 ~~--~~~D~~fs~~~l~ 573 (862)
T 1gax_A 559 AT--GGQDIRLDLRWLE 573 (862)
T ss_dssp CC--TTCCEECCHHHHH
T ss_pred CC--CCCCCccCHHHHH
Confidence 53 2234556666553
No 77
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=82.03 E-value=2 Score=50.08 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=60.2
Q ss_pred hhcCCCcEEEeCCCCCCCHH-----HHHHHHHHhCC---CCC--cEEEeeeee-------cCCCC---------------
Q 008289 255 DATMAISHVIRAEEHLPNTL-----RQALIYKALGF---SMP--YFAHVSLIL-------APDRS--------------- 302 (571)
Q Consensus 255 D~~m~ItHVIRG~Dhl~ntp-----~q~~l~~alg~---~~P--~f~H~pli~-------~~~g~--------------- 302 (571)
++-|-++.-|-|.||...-- -+..| ..+|+ ..| ...+.++|+ +.+|+
T Consensus 539 ~~~~PvD~yigG~EHailHllyaRf~~~~L-~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~ 617 (880)
T 4arc_A 539 NYWLPVDIYIGGIEHAIMHLLYFRFFHKLM-RDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDE 617 (880)
T ss_dssp HHHCSEEEEECCGGGTTTHHHHHHHHHHHH-HHTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECT
T ss_pred hccCCceEeecchhhHHHHHHHHHHHHHHH-HHhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHhcccccc
Confidence 45678898899999854321 12222 23343 456 245568885 67777
Q ss_pred ---------------------cccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHH
Q 008289 303 ---------------------KLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQL 349 (571)
Q Consensus 303 ---------------------KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~el 349 (571)
||||++|+ ++..++.++ |-+++++-|++..+- ....-.+|.+.+
T Consensus 618 ~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIek-YGADalRl~ll~~~~--~~~dl~~s~~~i 683 (880)
T 4arc_A 618 KGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVER-YGADTVRLFMMFASP--ADMTLEWQESGV 683 (880)
T ss_dssp TCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHH-HCHHHHHHHHHHSSC--TTSCEECCHHHH
T ss_pred ccccccccccCCccccccccccccCcCCCCCCHHHHHHH-cCchHHHHHHHhcCC--CCCCcccCHHHH
Confidence 99999998 788888776 889999999988752 122334555544
No 78
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=79.82 E-value=5.2 Score=45.30 Aligned_cols=81 Identities=14% Similarity=0.021 Sum_probs=52.9
Q ss_pred CCCCCceEEEeCCCCCCcCchhhHHHHHH--HHHHHHHcCCeEEEEecCC-----Ccc-cC---cHHHHHHHHHHHHHcC
Q 008289 50 NKVDGQVRVRFAPSPTGNLHVGGARTALF--NYLFARSKGGKFVLRIEDT-----DLE-RS---TKESEEAVLQDLSWLG 118 (571)
Q Consensus 50 ~~~~~~vr~RFAPSPtG~LHiG~~rtAl~--n~l~Ar~~~G~fiLRieDT-----D~~-R~---~~~~~~~i~~~L~wlG 118 (571)
.....+.-+-|-| |||.|||||+--.+. +-..--..|+..++=|-|- |+. .+ ..++......++.-+|
T Consensus 377 ~~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG 455 (690)
T 3p0j_A 377 AAPAKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYG 455 (690)
T ss_dssp CCCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 3344566678999 999999999988776 3222223488888877774 221 22 2344456667788889
Q ss_pred CCCCCCCCCCCCccceecccc
Q 008289 119 LDWDEGPGVGGDYGPYRQSER 139 (571)
Q Consensus 119 l~~Degp~~~g~~gpy~QSer 139 (571)
++..- ..++||+-
T Consensus 456 ~d~k~--------~fv~~S~~ 468 (690)
T 3p0j_A 456 LPSSV--------KIVTENEV 468 (690)
T ss_dssp CCTTS--------EEEEHHHH
T ss_pred CCcCe--------EEEECCch
Confidence 97421 25788874
No 79
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=76.63 E-value=5 Score=46.64 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=34.1
Q ss_pred CcccccCCC-CchHHHHHCCCCHHHHHHHHHHhCCCCCCCcccCCHHHHH
Q 008289 302 SKLSKRHGA-TSVGQFREMGYLPQAMVNYLALLGWGDGTENEFFTLKQLV 350 (571)
Q Consensus 302 ~KLSKR~g~-~~v~~~r~~G~~Peai~n~l~~lG~~~~~~~e~~s~~eli 350 (571)
+||||+.|+ ++..++.++ |-+++++-|++..+- ...+-.||.+.+.
T Consensus 636 ~KMSKSkGNvVdP~diI~~-yGADalRl~ll~~~~--~~~D~~fs~~~v~ 682 (878)
T 2v0c_A 636 AVMSKSKGNGVMVGPFVKE-QGADIARITILFAAP--PENEMVWTEEGVQ 682 (878)
T ss_dssp EECSGGGTCCCBHHHHHHH-SCHHHHHHHHHHHSC--TTSCEEECHHHHH
T ss_pred HHhhccCCCcccHHHHHHH-cCccHHHHHHhccCC--CCCCceeCHHHHH
Confidence 899999998 788888776 889999999987553 2233456666543
Done!