Query 008290
Match_columns 571
No_of_seqs 307 out of 1888
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 21:56:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.9E-53 4.1E-58 450.4 53.9 431 107-564 12-452 (455)
2 PRK10189 MATE family multidrug 100.0 6.1E-49 1.3E-53 419.7 54.8 427 108-561 25-468 (478)
3 PRK00187 multidrug efflux prot 100.0 1.5E-48 3.3E-53 416.3 52.2 428 106-559 4-450 (464)
4 PRK09575 vmrA multidrug efflux 100.0 1.5E-47 3.3E-52 407.9 52.8 421 106-551 6-434 (453)
5 PRK10367 DNA-damage-inducible 100.0 1.8E-47 3.9E-52 404.6 52.8 414 109-551 6-429 (441)
6 PRK01766 multidrug efflux prot 100.0 2.4E-46 5.2E-51 400.1 51.7 427 106-559 6-446 (456)
7 TIGR01695 mviN integral membra 100.0 2.8E-35 6.2E-40 318.9 51.3 412 114-553 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 2E-33 4.3E-38 303.4 49.9 406 115-552 2-433 (488)
9 TIGR00797 matE putative efflux 100.0 4.5E-34 9.8E-39 294.0 42.0 334 120-478 1-341 (342)
10 KOG1347 Uncharacterized membra 100.0 1.7E-35 3.6E-40 311.0 27.5 431 108-566 24-463 (473)
11 PRK15099 O-antigen translocase 100.0 1.3E-31 2.8E-36 283.1 46.6 400 114-550 3-409 (416)
12 PF03023 MVIN: MviN-like prote 100.0 1.5E-29 3.2E-34 268.3 49.7 389 142-555 5-405 (451)
13 COG0728 MviN Uncharacterized m 100.0 1.4E-28 3E-33 256.7 52.2 422 111-554 6-438 (518)
14 PRK10459 colanic acid exporter 100.0 7.9E-25 1.7E-29 236.5 48.4 396 111-550 4-402 (492)
15 COG2244 RfbX Membrane protein 99.9 4.2E-22 9.1E-27 214.7 44.4 387 110-537 4-396 (480)
16 PRK00187 multidrug efflux prot 99.9 6E-23 1.3E-27 219.4 14.7 281 35-339 139-444 (464)
17 COG0534 NorM Na+-driven multid 99.9 2.2E-22 4.9E-27 213.3 15.6 280 35-341 147-445 (455)
18 PRK10189 MATE family multidrug 99.9 9.2E-20 2E-24 195.1 28.0 204 347-550 23-234 (478)
19 PRK10367 DNA-damage-inducible 99.9 2.8E-19 6.1E-24 189.5 28.3 203 349-551 5-210 (441)
20 PRK09575 vmrA multidrug efflux 99.8 6.8E-19 1.5E-23 187.8 27.5 205 349-553 8-215 (453)
21 PRK01766 multidrug efflux prot 99.8 3E-18 6.5E-23 183.4 28.5 203 349-551 8-216 (456)
22 TIGR01695 mviN integral membra 99.8 9.3E-16 2E-20 166.3 32.8 210 107-340 218-429 (502)
23 TIGR00797 matE putative efflux 99.7 2E-15 4.3E-20 155.3 26.9 191 361-551 1-195 (342)
24 PF01943 Polysacc_synt: Polysa 99.7 2E-14 4.4E-19 142.4 32.0 270 115-420 2-273 (273)
25 PF01554 MatE: MatE; InterPro 99.7 4.6E-17 9.9E-22 148.5 9.5 161 120-305 1-162 (162)
26 TIGR02900 spore_V_B stage V sp 99.7 2.4E-14 5.1E-19 154.7 28.4 203 108-339 221-434 (488)
27 PF01554 MatE: MatE; InterPro 99.7 5.3E-17 1.1E-21 148.1 5.5 160 361-520 1-161 (162)
28 PF03023 MVIN: MviN-like prote 99.7 9.3E-14 2E-18 147.7 30.7 210 108-341 194-405 (451)
29 COG0728 MviN Uncharacterized m 99.6 2.2E-12 4.9E-17 135.5 34.7 230 109-364 229-460 (518)
30 PRK10459 colanic acid exporter 99.6 1E-11 2.2E-16 134.4 33.9 203 107-339 202-405 (492)
31 PF13440 Polysacc_synt_3: Poly 99.5 1.7E-11 3.6E-16 120.0 30.4 247 130-419 2-251 (251)
32 PRK15099 O-antigen translocase 99.5 1.1E-12 2.3E-17 138.8 23.4 202 106-338 209-411 (416)
33 COG2244 RfbX Membrane protein 99.4 8.7E-11 1.9E-15 126.7 26.9 188 107-324 208-396 (480)
34 KOG2864 Nuclear division RFT1 99.1 2.7E-06 5.9E-11 85.9 35.4 413 109-551 5-447 (530)
35 PF04506 Rft-1: Rft protein; 99.0 1.7E-06 3.6E-11 93.3 33.0 298 255-552 131-469 (549)
36 KOG1347 Uncharacterized membra 99.0 3.9E-08 8.5E-13 104.3 19.6 200 350-550 25-227 (473)
37 PF07260 ANKH: Progressive ank 98.7 6E-05 1.3E-09 73.3 28.0 313 107-451 6-343 (345)
38 PF14667 Polysacc_synt_C: Poly 98.3 6.5E-05 1.4E-09 66.8 18.7 81 259-341 2-82 (146)
39 PF04506 Rft-1: Rft protein; 98.3 0.00019 4.2E-09 77.5 23.5 216 110-341 251-472 (549)
40 PF01943 Polysacc_synt: Polysa 98.1 0.0013 2.8E-08 64.7 22.9 184 357-551 3-189 (273)
41 PF13440 Polysacc_synt_3: Poly 98.0 0.0021 4.5E-08 62.5 23.6 161 377-551 9-171 (251)
42 PF14667 Polysacc_synt_C: Poly 97.9 8E-05 1.7E-09 66.2 10.4 80 475-554 2-81 (146)
43 COG4267 Predicted membrane pro 97.8 0.052 1.1E-06 54.3 34.7 338 156-540 68-433 (467)
44 KOG2864 Nuclear division RFT1 97.7 0.012 2.6E-07 60.2 23.2 208 112-342 239-452 (530)
45 PF07260 ANKH: Progressive ank 97.0 0.45 9.8E-06 47.0 22.9 155 350-510 8-167 (345)
46 COG4267 Predicted membrane pro 88.7 31 0.00066 35.3 20.6 132 403-548 75-206 (467)
47 COG3366 Uncharacterized protei 55.4 2.3E+02 0.005 28.4 19.5 56 280-335 245-308 (311)
48 PF04505 Dispanin: Interferon- 53.8 72 0.0016 25.0 6.9 37 408-444 36-72 (82)
49 PF14184 YrvL: Regulatory prot 41.6 2.3E+02 0.0051 24.5 13.0 105 215-323 5-109 (132)
50 PF13572 DUF4134: Domain of un 37.9 2.2E+02 0.0048 23.2 8.2 67 206-279 32-98 (98)
51 PF13347 MFS_2: MFS/sugar tran 37.6 4.9E+02 0.011 27.1 15.1 25 491-515 280-304 (428)
52 PF04172 LrgB: LrgB-like famil 27.6 5.3E+02 0.012 24.4 15.8 42 111-152 70-112 (215)
53 PF06808 DctM: DctM-like trans 25.6 8E+02 0.017 25.8 18.6 79 349-448 206-284 (416)
54 PTZ00370 STEVOR; Provisional 25.3 3.5E+02 0.0076 26.7 7.8 24 541-564 270-293 (296)
55 PF05975 EcsB: Bacterial ABC t 23.5 8.4E+02 0.018 25.3 15.6 36 207-242 90-125 (386)
56 COG4536 CorB Putative Mg2+ and 20.5 6E+02 0.013 26.3 8.6 98 118-248 60-158 (423)
57 PF01102 Glycophorin_A: Glycop 20.0 1.6E+02 0.0035 25.1 4.0 25 316-340 68-92 (122)
58 PF11457 DUF3021: Protein of u 20.0 5.5E+02 0.012 21.8 12.5 29 427-456 3-31 (136)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.9e-53 Score=450.37 Aligned_cols=431 Identities=27% Similarity=0.425 Sum_probs=400.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 008290 107 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK 186 (571)
Q Consensus 107 ~~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~ 186 (571)
.++..|+++++++|++++++...+++++|++++||+|++++||.++++++..++..... |++.+.++++||++|+||
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~-gl~~g~~~liaq~~Ga~~-- 88 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFI-GLGTGTTVLVAQAIGAGD-- 88 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHcCCc--
Confidence 44588999999999999999999999999999999999999999999999999996655 999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhH
Q 008290 187 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGA 266 (571)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~ 266 (571)
++++++..++++.++++++++..++.+++.++++.+++.++| +.+.+.+|+++..++.
T Consensus 89 --------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~--v~~~a~~Yl~i~~~~~ 146 (455)
T COG0534 89 --------------------RKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAE--VLELAAEYLRIILLGA 146 (455)
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh--HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhh-cC-cchhHHHHHHHHHHHHHHHHHHHHHHhcCc---
Q 008290 267 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYY-FK-LGVTGAAISTVGSQYMVTLLMIWYLNKRTI--- 341 (571)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~-~~-~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~--- 341 (571)
|+..++.++.+++|+.||+|.+++..++++++|+++|++|+++ ++ +|+.|+|+||.+++++.+++.++++.|+++
T Consensus 147 ~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~ 226 (455)
T COG0534 147 PFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLS 226 (455)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 9999999999999999999999999999999999999999999 57 999999999999999999999999987663
Q ss_pred cc---CCCcchhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008290 342 LS---IPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIAS 418 (571)
Q Consensus 342 ~~---~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~lG~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~vs~ 418 (571)
.. ..++++..+|++++.|+|..++...+...+...+.+++++|++++|+|+++.++.++.++++.|++++.++++++
T Consensus 227 ~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~ 306 (455)
T COG0534 227 LFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQ 306 (455)
T ss_pred hhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 224556678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 008290 419 SFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGV 498 (571)
Q Consensus 419 ~~g~~~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 498 (571)
++|++|+|++|+..+.++.++.++++..++++++++++++++|++|+++.+.+..++++.++..++++.+.+..+++||.
T Consensus 307 ~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~ 386 (455)
T COG0534 307 NLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGA 386 (455)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHH-HHHHHHHHHhccc-cchhHHHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcC
Q 008290 499 SDFSYAAYSMMAVG-AISSVFLLYAPRV-FGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQKHM 564 (571)
Q Consensus 499 g~~~~~~~~~~~~~-l~~i~~~~~l~~~-~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~~~w~~~~~~~ 564 (571)
||+|.+++.++... ...+++.+++... +|..|+|+++.+++.++.+...+++ ++.+|+....+.
T Consensus 387 g~~~~~~~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 452 (455)
T COG0534 387 GDAKIPFIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRL--RRGRWRRKAVAA 452 (455)
T ss_pred CCcHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhhc
Confidence 99999998877744 3345666666555 9999999999999999999999888 667777665443
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=6.1e-49 Score=419.66 Aligned_cols=427 Identities=18% Similarity=0.246 Sum_probs=383.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 008290 108 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 187 (571)
Q Consensus 108 ~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~~ 187 (571)
-+..|+++++++|.++++++..+..++|+.++|++|++++|+++++.++..+...+. .|++++.+++++|++|++|
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~-~gl~~g~~~lvsq~~Ga~~--- 100 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFF-AAIDLGTTVVVAFSLGKRD--- 100 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCC---
Confidence 345899999999999999999999999999999999999999999999988877554 5999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC--CCCCccchHHHHHHHHHHHhh
Q 008290 188 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMG--ISSASSMRIPAQRFLSLRAIG 265 (571)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~a~~~l~i~~~~ 265 (571)
++++++..+.++.++++++++.+++.++++++++.+++ .|+| +.+.+.+|+++..++
T Consensus 101 -------------------~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~--v~~~a~~Yl~i~~~~ 159 (478)
T PRK10189 101 -------------------RRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPE--VKALALTYLELTVWS 159 (478)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChH--HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999995 4544 999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhc----CcchhHHHHHHHHHHHHHHHHHHHHHHhc-C
Q 008290 266 APAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYF----KLGVTGAAISTVGSQYMVTLLMIWYLNKR-T 340 (571)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~----~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~-~ 340 (571)
.|+..++.+.++++|+.||++.+++.+++..++|++++++++++. ++|+.|+|+|+.+++++..++..+++.++ +
T Consensus 160 ~~~~~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~ 239 (478)
T PRK10189 160 YPAAAITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFN 239 (478)
T ss_pred HHHHHHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999863 79999999999999999988877666543 2
Q ss_pred cccCC-------CcchhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 008290 341 ILSIP-------NMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQ 413 (571)
Q Consensus 341 ~~~~~-------~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~lG~~~vaa~~i~~~i~~l~~~i~~~l~~a~~ 413 (571)
+..+. +.+...+|+++|.|.|..++.+.......+.+.+++++|++++|+|+++.++.++.+++..|++++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~ 319 (478)
T PRK10189 240 PALRISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSAST 319 (478)
T ss_pred ccceeeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 12345678999999999999999999988888899999999999999999999999999999999999
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008290 414 ALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDG 493 (571)
Q Consensus 414 ~~vs~~~g~~~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~ 493 (571)
++++|++|+||++++|+..+.++.++.++++.++++++++++++.++|++|+|+.+.+..++++.++..++++++.+..+
T Consensus 320 ~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g 399 (478)
T PRK10189 320 IITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPA 399 (478)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHH-HHHHHHHHHh--ccccchhHHHHHHHHHHHHHHHHHHHHHHhccCChhhhh
Q 008290 494 LHYGVSDFSYAAYSMMAVG-AISSVFLLYA--PRVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQ 561 (571)
Q Consensus 494 ~l~~~g~~~~~~~~~~~~~-l~~i~~~~~l--~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~~~w~~~~ 561 (571)
.++|.||++.+++.++... ++.+|+.+++ ..++|+.|+|++..+++.+..++.++++ ++++|++..
T Consensus 400 ~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~--~~~~W~~~~ 468 (478)
T PRK10189 400 GLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRM--VSGRWLWKY 468 (478)
T ss_pred HhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH--HcCccccCC
Confidence 9999999999998765543 2333443332 2468999999999999999999888777 778898743
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.5e-48 Score=416.29 Aligned_cols=428 Identities=18% Similarity=0.202 Sum_probs=381.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 008290 106 CVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSS 185 (571)
Q Consensus 106 ~~~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~ 185 (571)
.+++..|+++++++|.+++++++.+.+++|+.+++|+|++++|+++++.++.++...+ ..|++++.++++||++|++|
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~-~~gl~~~~~~i~aq~~Ga~~- 81 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIF-CVGVIAAVGTLVAIRHGAGD- 81 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCC-
Confidence 3456789999999999999999999999999999999999999999999999888755 45999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhh
Q 008290 186 KDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIG 265 (571)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~ 265 (571)
+|++++.+++++.+.++++++..++.+ +.++++.+++.|+| +.+.+.+|++++.++
T Consensus 82 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~e--v~~~~~~Yl~i~~~~ 137 (464)
T PRK00187 82 ---------------------IEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQ--NVDAAMQFLHLLPFA 137 (464)
T ss_pred ---------------------hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHH--HHHHHHHHHHHHHHH
Confidence 999999999999999999998877655 67999999988776 999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhc----CcchhHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 008290 266 APAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYF----KLGVTGAAISTVGSQYMVTLLMIWYLNKRTI 341 (571)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~----~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~ 341 (571)
.|+..+....++++|+.|+++.+++.++++.++|++++++|+++. ++|+.|+|+|+++++.+..+..+++++++++
T Consensus 138 ~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~ 217 (464)
T PRK00187 138 LPGYLSFMALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPA 217 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcch
Confidence 999999999999999999999999999999999999999999863 5899999999999999888777666654332
Q ss_pred c--cC-----CCcchhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008290 342 L--SI-----PNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQA 414 (571)
Q Consensus 342 ~--~~-----~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~lG~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~ 414 (571)
. .+ .+++...+|+++|.++|.+++.+.+.....+++.+++++|++++|+++++.++..+..++..|++.+..+
T Consensus 218 ~~~~~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~ 297 (464)
T PRK00187 218 YAAYPLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTM 297 (464)
T ss_pred hhhhhhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 1233445789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCC--Ch---HHHHHHHHHHHHHHHHhHHHHHHH
Q 008290 415 LIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTS--DT---QVLGIVRSGLLFVSASQPVTAVAY 489 (571)
Q Consensus 415 ~vs~~~g~~~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~--d~---~v~~~~~~~l~i~~~~~~~~~~~~ 489 (571)
+++|++|+||++++++..++++.++.+++++.+++++++++++.++|++ |+ |+.+.+..++++.+++.++++++.
T Consensus 298 lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~ 377 (464)
T PRK00187 298 RVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQT 377 (464)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999999999999999999999999999999974 44 688899999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH-HHHHHHHHHhc--cccchhHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Q 008290 490 IFDGLHYGVSDFSYAAYSMMAVG-AISSVFLLYAP--RVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWF 559 (571)
Q Consensus 490 ~~~~~l~~~g~~~~~~~~~~~~~-l~~i~~~~~l~--~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~~~w~~ 559 (571)
++.++++|.||+|.+++.+.+.. +..+++.+.+. +++|+.|+|+++.+++++..+..++++++++.+|.+
T Consensus 378 v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~~~~~ 450 (464)
T PRK00187 378 IAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTARLLR 450 (464)
T ss_pred HHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999887755 55555554433 468999999999999999988887777554444433
No 4
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.5e-47 Score=407.88 Aligned_cols=421 Identities=17% Similarity=0.218 Sum_probs=384.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 008290 106 CVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSS 184 (571)
Q Consensus 106 ~~~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~-lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~ 184 (571)
.+++..|+++++++|.+++++...+++++|+.++|| +|++++|+++++.++.++.... ..|++.+.+++++|++|++|
T Consensus 6 ~~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~-~~~~~~g~~~lvsq~~Ga~~ 84 (453)
T PRK09575 6 MNQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGI-GLMVGMGTGSLLSIKRGEGD 84 (453)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH-HHHHhccHHHHHHHHhcCCC
Confidence 345688999999999999999999999999999999 6999999999999998887754 45899999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHh
Q 008290 185 SKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAI 264 (571)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~ 264 (571)
+|++++.+++++.++++++++..++++.++++++.+++.|++ +.+.+.+|+++..+
T Consensus 85 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~--~~~~~~~yl~i~~~ 140 (453)
T PRK09575 85 ----------------------LEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGR--TLELALQYIQVLIW 140 (453)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh--hHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988876 89999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Q 008290 265 GAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSI 344 (571)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~~~~ 344 (571)
+.++..++.....++|+.|+++.+++.++.+.++|+++++++++.+++|+.|+++++.+++++..++.+++++++++..+
T Consensus 141 ~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~ 220 (453)
T PRK09575 141 GCLFTLGAIALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIR 220 (453)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeE
Confidence 99999999999999999999999999999999999999999999889999999999999999999988877765433222
Q ss_pred C-----CcchhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhCh-hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008290 345 P-----NMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGA-LAMAAHQICLQVWLSVSMLADAQAASGQALIAS 418 (571)
Q Consensus 345 ~-----~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~lG~-~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~vs~ 418 (571)
+ ++++..+|++++.|.|..++.........+...+++++|+ +++|+++++.++..+..++..|++.+..|++||
T Consensus 221 ~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~ 300 (453)
T PRK09575 221 LTLKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSY 300 (453)
T ss_pred EeeccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 2 2233346889999999999999999999999999999985 689999999999999999999999999999999
Q ss_pred HhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCC-ChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008290 419 SFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTS-DTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYG 497 (571)
Q Consensus 419 ~~g~~~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~-d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 497 (571)
++|+||+|++|+..+.++.+++..+++.++++..+++++.++|++ |||+.+.+.+++++.+++.++++++.+..++++|
T Consensus 301 ~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~ 380 (453)
T PRK09575 301 YFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMA 380 (453)
T ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999995 7899999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008290 498 VSDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLL 551 (571)
Q Consensus 498 ~g~~~~~~~~~~~~~l~~i~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~ 551 (571)
.||++.++..+....++.+++.+.++..+|+.|+|+++.+++.+..++..++++
T Consensus 381 ~g~~~~~~~~~~~~~~v~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~ 434 (453)
T PRK09575 381 VNQGGKALFISIGNMLIQLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLW 434 (453)
T ss_pred cCCcHHHHHHHHHhHHHHHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHH
Confidence 999999998887766667788777766689999999999999988877766553
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.8e-47 Score=404.56 Aligned_cols=414 Identities=23% Similarity=0.281 Sum_probs=365.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 008290 109 NVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRL-GPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 187 (571)
Q Consensus 109 ~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~l-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~~ 187 (571)
+..|+++++++|.+++++...+++++|+.++||+ |++++|+++++.++.++...+. .|++.+.++++||++|++|
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~-~~~~~g~~~lvsq~~Ga~~--- 81 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLL-LFLRMSTTGLTAQAFGAKN--- 81 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCC---
Confidence 4578999999999999999999999999999997 6778999999999988887554 5899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhHH
Q 008290 188 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAP 267 (571)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~ 267 (571)
+|++++..++++.++++++++..++...+.++++.+++.|+| +.+.+.+|++++.++.|
T Consensus 82 -------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~--v~~~a~~Yl~i~~~~~~ 140 (441)
T PRK10367 82 -------------------PQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEA--VLEQARRFLEIRWLSAP 140 (441)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888889999999998887 99999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHhcCcc--cCC
Q 008290 268 AVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTIL--SIP 345 (571)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~~--~~~ 345 (571)
+..++.++++++|+.||++.+++..+++.++|+++++++++++++|+.|+|+|+.+++++.+++.++++.++++. .+.
T Consensus 141 ~~~~~~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~ 220 (441)
T PRK10367 141 ASLANLVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISL 220 (441)
T ss_pred HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccH
Confidence 999999999999999999999999999999999999999999899999999999999999998887777653211 111
Q ss_pred ---Ccc-hhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 008290 346 ---NMK-NLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFA 421 (571)
Q Consensus 346 ---~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~lG~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~vs~~~g 421 (571)
+.+ +..+|+++|.+.|..++...+...+.+.+.+++++|++++|+|+++.++.++.+++..|++++.+|+++|++|
T Consensus 221 ~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~G 300 (441)
T PRK10367 221 EMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYG 300 (441)
T ss_pred HHhhhhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 111 1356899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC--
Q 008290 422 KGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVS-- 499 (571)
Q Consensus 422 ~~~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g-- 499 (571)
+||++++|+..++++.++.+++.+.+++++++++++..+|++|+|+.+.+..++++.++..+.........++++|.+
T Consensus 301 a~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg 380 (441)
T PRK10367 301 ARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRA 380 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccch
Confidence 999999999999999999999999999999999999999999999999999999998876433324444444455544
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008290 500 -DFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLL 551 (571)
Q Consensus 500 -~~~~~~~~~~~~~l~~i~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~ 551 (571)
|++.+++.+.+...+ ..+..+.+|+.|+|++..+++.++.++..++++
T Consensus 381 ~dt~~~~~~~~~~~~~----~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~ 429 (441)
T PRK10367 381 AEMRNSMAVAAAGFAL----TLLTLPWLGNHGLWLALTVFLALRGLSLAAIWR 429 (441)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 599888877765332 112224689999999999999999998887763
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=2.4e-46 Score=400.08 Aligned_cols=427 Identities=20% Similarity=0.218 Sum_probs=384.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 008290 106 CVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSS 185 (571)
Q Consensus 106 ~~~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~ 185 (571)
..++..|+++++++|.++++++..+.+++|+.+++++|++++++++++.++....... ..|++.+.++++||++|++|
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~-~~g~~~a~~~~vs~~~g~~~- 83 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILF-GHGLLLALTPIVAQLNGAGR- 83 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCC-
Confidence 3456789999999999999999999999999999999999999999998887766644 45899999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhh
Q 008290 186 KDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIG 265 (571)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~ 265 (571)
++++++.++.++.++++++++++++++.+++++..+++.|++ +.+.+..|++++.++
T Consensus 84 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~~~~~~yl~i~~~~ 140 (456)
T PRK01766 84 ---------------------RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPE--VADIAVGYLHALLWG 140 (456)
T ss_pred ---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHH--HHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999998776 889999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhh----cCcchhHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 008290 266 APAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYY----FKLGVTGAAISTVGSQYMVTLLMIWYLNKRTI 341 (571)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~----~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~ 341 (571)
.++..++.++++++++.|+++++++..+++.++|+++++++++. +.+|+.|+++++.+++++..++..++++|+++
T Consensus 141 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~ 220 (456)
T PRK01766 141 IPAYLLYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARR 220 (456)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 99999999999999999999999999999999999999999864 46899999999999999999998888765432
Q ss_pred c----c---CCCcchhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008290 342 L----S---IPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQA 414 (571)
Q Consensus 342 ~----~---~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~lG~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~ 414 (571)
. . ..+.++..+|++++.++|.+++...+...+.++..+++++|++++|+++++.++.++..+++.|++.+..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~ 300 (456)
T PRK01766 221 FRDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTI 300 (456)
T ss_pred hhHHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 11234456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 008290 415 LIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGL 494 (571)
Q Consensus 415 ~vs~~~g~~~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~ 494 (571)
.++|++|+||++++|+..+.++.++..++++.+++++.+++++.++|++||++.+.+..++++..++.++++++.+..++
T Consensus 301 ~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~ 380 (456)
T PRK01766 301 RVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGA 380 (456)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHH-HHHHHHHHHhc--cccchhHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Q 008290 495 HYGVSDFSYAAYSMMAVG-AISSVFLLYAP--RVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWF 559 (571)
Q Consensus 495 l~~~g~~~~~~~~~~~~~-l~~i~~~~~l~--~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~~~w~~ 559 (571)
++|.||++.+++.+++.. +..+++.+++. +.+|+.|+|+++.+++.+..++.++++ ++.+|+.
T Consensus 381 l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 446 (456)
T PRK01766 381 LRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRL--RKLQRQP 446 (456)
T ss_pred hhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 999999999999887654 44555544432 568999999999999999999888776 3345554
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=2.8e-35 Score=318.89 Aligned_cols=412 Identities=13% Similarity=0.112 Sum_probs=348.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcchh-hhhchhHHHHHHHHHHhh-hhhhhHHHHHHHHHhhhccCCCCCC
Q 008290 114 LIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLEL-ASAGVSTSIFNILSKVFN-IPLLSVATSFVAEDISRSSSKDSTS 190 (571)
Q Consensus 114 l~~~~~p~~~~~~~~~l~~~v~~~~l~~-lg~~~~-aa~~~~~~~~~~~~~~~~-~gl~~~~~~~vs~~~g~~~~~~~~~ 190 (571)
+.|.+.-.+++++.+.+++++|..+++| +|++++ ++++++.++.+.+..+.. .|+.++..+.. .+++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~---~~~~~~----- 73 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVF---TKAKKK----- 73 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHhh-----
Confidence 4677888899999999999999999999 999999 899999999987765544 34555544444 444431
Q ss_pred CCCCCCCCCCCCCccchhhhhhhHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHhC--CCCCccchHHHHHHHHHHHhhHH
Q 008290 191 DSSCPNVSYNGCDESTDRKLLPSVSTALVLAL-TIGILEALAMYFGSGLFLDIMG--ISSASSMRIPAQRFLSLRAIGAP 267 (571)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~a~~~l~i~~~~~~ 267 (571)
+|++++.+..++.... +.+++.+++.+++++++..+++ .+++ ..+.+.+|+++..++.+
T Consensus 74 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~--~~~~~~~~l~i~~~~~~ 135 (502)
T TIGR01695 74 ----------------EKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADE--TRSLAVSLTRIMFPYLL 135 (502)
T ss_pred ----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHHHHH
Confidence 2345555666555555 4444556778888999999884 3443 67889999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchhHHH--HHHHHHHHHHHHHHHHHHHhcCcccCC
Q 008290 268 AVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAA--ISTVGSQYMVTLLMIWYLNKRTILSIP 345 (571)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa--~a~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (571)
+..++.+.++++|+.+|++.+++.+++.++++++. .++...++|+.|++ +++.+++.+..++.+++.+|++...++
T Consensus 136 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~--~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 213 (502)
T TIGR01695 136 LISLAAVFGGILNARKRFFIPSFSPILFNIGVILS--LLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP 213 (502)
T ss_pred HHHHHHHHHHHHhccCeeHHHHHHHHHHHHHHHHH--HHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence 99999999999999999999999999988887764 33334579999998 999999999998888777665432233
Q ss_pred --CcchhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhhC
Q 008290 346 --NMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSM-LADAQAASGQALIASSFAK 422 (571)
Q Consensus 346 --~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~lG~~~vaa~~i~~~i~~l~~~-i~~~l~~a~~~~vs~~~g~ 422 (571)
++++..+|++++.+.|..++.....+...+++.+.+.+|++++++|+.+.++..++.. +..+++++..|.+++++|+
T Consensus 214 ~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~ 293 (502)
T TIGR01695 214 RFNFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASE 293 (502)
T ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345678999999999999999999999999998888899999999999999988775 6789999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCC----ChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 008290 423 GDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTS----DTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGV 498 (571)
Q Consensus 423 ~~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~----d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 498 (571)
+|++++|+..++++++...++++.++++.++++++..+|.+ |++..+.+..++++++++.++.+++.++.+.+++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~ 373 (502)
T TIGR01695 294 GNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYAR 373 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc
Confidence 99999999999999999999999999999999999999876 56778889999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 008290 499 SDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSK 553 (571)
Q Consensus 499 g~~~~~~~~~~~~~l~~i~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~ 553 (571)
||+|.+++.+....+.++++++++++.+|+.|+|+++.+++.+...+..++++++
T Consensus 374 g~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 374 KDTRTPFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988888888888777889999999999999999988887777544
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=2e-33 Score=303.41 Aligned_cols=406 Identities=13% Similarity=0.179 Sum_probs=348.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCCC
Q 008290 115 IMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSS 193 (571)
Q Consensus 115 ~~~~~p~~~~~~~~~l~~~v~~~~l~~-lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~~~~~~~~ 193 (571)
.+-+.|.+++++...+.+++|+.+++| +|++++|+++.+.++.+++..+...|+.++..+.+||+.|++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~--------- 72 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKND--------- 72 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccc---------
Confidence 356899999999999999999999999 8999999999999999998877778999999999999999888
Q ss_pred CCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhHHHHHHHH
Q 008290 194 CPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSL 273 (571)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~ 273 (571)
+++.++.++.++.+.++++++.+++++.+++++...++.+++ ...++++..+..++..+..
T Consensus 73 -------------~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~------~~~~l~~~~~~~~~~~~~~ 133 (488)
T TIGR02900 73 -------------RKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDER------SLYSLLVICPAMPFIALSS 133 (488)
T ss_pred -------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChh------HHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999998889999998887765554 2457888999999999999
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhh-----cCcchhHHHHHHHHHHHHHHHHHHHHHHhcCc-ccCC--
Q 008290 274 AIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYY-----FKLGVTGAAISTVGSQYMVTLLMIWYLNKRTI-LSIP-- 345 (571)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~-----~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~-~~~~-- 345 (571)
..++++|+.+|++..+..++++.++++.+...++.. ..+|+.|+++++.+++.+..++..++.+|+++ +.++
T Consensus 134 ~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (488)
T TIGR02900 134 VLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPF 213 (488)
T ss_pred HHHHHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 999999999999999999999999988766555432 25678899999999999999988766654332 1111
Q ss_pred ----CcchhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh----C---hh---HHHHH-HHHHHHHHHHHHhHHHHHH
Q 008290 346 ----NMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQ----G---AL---AMAAH-QICLQVWLSVSMLADAQAA 410 (571)
Q Consensus 346 ----~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~l----G---~~---~vaa~-~i~~~i~~l~~~i~~~l~~ 410 (571)
+.++..+|++++++.|..++.+...+...+|+.++++. | .+ .++.| +++.++..++..+..+++.
T Consensus 214 ~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~ 293 (488)
T TIGR02900 214 FDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLST 293 (488)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHH
Confidence 11233678999999999999999999999999888764 2 22 22333 3566777888888899999
Q ss_pred HHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008290 411 SGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYI 490 (571)
Q Consensus 411 a~~~~vs~~~g~~~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~ 490 (571)
+..|.+++++|++|+++.++..++.+++...++.+.++++..+++++..+|.++++ +.++++++++..++..++..
T Consensus 294 ~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~ 369 (488)
T TIGR02900 294 ALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAP 369 (488)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999886554 35789999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008290 491 FDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAP--RVFGLSAVWWGLTLFMSLRVAAGYFRLLS 552 (571)
Q Consensus 491 ~~~~l~~~g~~~~~~~~~~~~~l~~i~~~~~l~--~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~ 552 (571)
..+.+++.||+|..++.+....+.++++++.+. +.+|+.|+|+++.+++++...+..+..++
T Consensus 370 ~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 370 LQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888888877765 78999999999999999988888777653
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=4.5e-34 Score=293.97 Aligned_cols=334 Identities=31% Similarity=0.493 Sum_probs=306.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 008290 120 PAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSY 199 (571)
Q Consensus 120 p~~~~~~~~~l~~~v~~~~l~~lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~ 199 (571)
|.++++++..+...+|+.+++++|++++++++++.++.++... +..|++++..+.+++++|++|
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~-~~~~i~~~~~~~~s~~~g~~~--------------- 64 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFS-ILMGLGTATTALVAQAVGAGN--------------- 64 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHH-HHHHHHHhHHHHHHHHHCCCC---------------
Confidence 7889999999999999999999999999999999888777774 455999999999999999988
Q ss_pred CCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 008290 200 NGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIF 279 (571)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l 279 (571)
+|+.++..+.++.+..+++++.+++++.+++++..+++.+++ ..+.+.++++++.++.++..++.+..+++
T Consensus 65 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 135 (342)
T TIGR00797 65 -------YQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGE--VAELAQDYLRILILGIPAYLLNFVLRGFL 135 (342)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999986665 78889999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHhHHHHh-hcC-cchhHHHHHHHHHHHHHHHHHHHHHHhcCcc-c----CCCcchhcH
Q 008290 280 RGFKDTRTPVFCLGLGNFSAVFMFPMLMY-YFK-LGVTGAAISTVGSQYMVTLLMIWYLNKRTIL-S----IPNMKNLHF 352 (571)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~l~~~li~-~~~-~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~ 352 (571)
++.+|++.++..++++.++++++++++++ .++ +|+.|+++++.+++.+..++..++.+|+++. . +.++++..+
T Consensus 136 ~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (342)
T TIGR00797 136 RGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVL 215 (342)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHH
Confidence 99999999999999999999999998887 567 8899999999999999999888777653221 1 234455678
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCChhHHHHHH
Q 008290 353 GDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEIT 432 (571)
Q Consensus 353 ~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~lG~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~vs~~~g~~~~~~~~~~~ 432 (571)
|+++++++|.++..+..++...+++.+++.+|++++++|+++.++.++...++.+++++..|.++++++++|+++.++..
T Consensus 216 k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (342)
T TIGR00797 216 KRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVA 295 (342)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHH
Q 008290 433 HFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFV 478 (571)
Q Consensus 433 ~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~ 478 (571)
++++++.++++++.++++.++++++.++|++||++.+.+..++++.
T Consensus 296 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 296 RVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998888764
No 10
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=311.04 Aligned_cols=431 Identities=19% Similarity=0.219 Sum_probs=388.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 008290 108 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 187 (571)
Q Consensus 108 ~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~~ 187 (571)
..+.|++++++.|+++..+..++.+++++.++||+|+.++|+.+++++..+....-...|+.++.+|+++|++|+++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~--- 100 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKK--- 100 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccc---
Confidence 46789999999999999999999999999999999999999999999999986666667999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhHH
Q 008290 188 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAP 267 (571)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~ 267 (571)
++....+.+++..+.+..+++...+ +.+.++++..+++|++ +...+..|.++..++.+
T Consensus 101 -------------------~~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~--i~~~a~~y~~~~ip~~~ 158 (473)
T KOG1347|consen 101 -------------------FTALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPD--ISRDAGSYAFMLIPGLF 158 (473)
T ss_pred -------------------cchhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChh--HHHHHhhhHhhhcchhh
Confidence 8888899999999999999999865 6678999999999998 99999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHhcC-cccC--
Q 008290 268 AVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRT-ILSI-- 344 (571)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~-~~~~-- 344 (571)
.......++.++|++++..+..++.....++|+.+++++++.+++|+.|++++..+++++.......|..... ...+
T Consensus 159 a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~ 238 (473)
T KOG1347|consen 159 SYAVSFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSG 238 (473)
T ss_pred hhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998886543 1111
Q ss_pred CCcchhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhC
Q 008290 345 PNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQG--ALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAK 422 (571)
Q Consensus 345 ~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~lG--~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~vs~~~g~ 422 (571)
..++..+++++++++.|..++.+.+++.+.+..+..+.++ ..++++.+++.++....++++.+++.++.+++++.+|+
T Consensus 239 ~s~~~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGa 318 (473)
T KOG1347|consen 239 FSGEFDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGA 318 (473)
T ss_pred hhHhhhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcC
Confidence 1222557789999999999999999999999999999997 58999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChh
Q 008290 423 GDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFS 502 (571)
Q Consensus 423 ~~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 502 (571)
|+++.+|......+..++.++...+..++.+++.+..+|++|+++.+.+.+..++++++.++++.+.++.++.+|.|+++
T Consensus 319 g~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~ 398 (473)
T KOG1347|consen 319 GKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQ 398 (473)
T ss_pred CChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH----HHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCc
Q 008290 503 YAAYSM----MAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSKNGPWWFLQKHMPK 566 (571)
Q Consensus 503 ~~~~~~----~~~~l~~i~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~~~w~~~~~~~~~ 566 (571)
...+.+ ++.++|...+..+ ..++|..|+|+++..+..+......+.. .+.+|++...+.++
T Consensus 399 ~ga~vnl~~yyl~G~p~g~~l~~-~~~~g~~glw~G~~~~~~~~~~~l~~~~--~~tdW~~~~~~a~~ 463 (473)
T KOG1347|consen 399 IGAVINLVAYYLVGAPVGLYLGF-FTKFGVKGLWIGILLGFSVQTLVLAIVT--ARTDWKNQAEKAFA 463 (473)
T ss_pred ceEEEeeeeeeEecCcceeEEEE-EEecCceEEEeehHHHHHHHHHHHHHhe--eeccHHHHHHHHHH
Confidence 877643 4456655544443 3679999999999999666666665554 67899888766543
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=1.3e-31 Score=283.09 Aligned_cols=400 Identities=15% Similarity=0.097 Sum_probs=341.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCC
Q 008290 114 LIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDS 192 (571)
Q Consensus 114 l~~~~~p~~~~~~~~~l~~~v~~~~l~~-lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~~~~~~~ 192 (571)
+.|.+.....+++...+.+++...++.| +|++++|.++...++...+..+.+.|++++.+..++|+ ++|
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~-------- 72 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQ-------- 72 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCC--------
Confidence 4566777888999999999999999999 99999999999999999888777889999988899887 444
Q ss_pred CCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhHHHHHHH
Q 008290 193 SCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLS 272 (571)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~ 272 (571)
+++.+++...++.+.++.+++.+++++.+++|+...++.+++ -..++++..+..++..+.
T Consensus 73 --------------~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 132 (416)
T PRK15099 73 --------------PQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD------YQGVVRAVALIQMGIAWA 132 (416)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999999999988876554 346677777777778888
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHhcCcc----cCCCcc
Q 008290 273 LAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTIL----SIPNMK 348 (571)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 348 (571)
....+.+|+.+|++.++...+++.++|+.+ +++++. ..|+.|+++++.+++.+..+..+++++|+++. .+++++
T Consensus 133 ~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (416)
T PRK15099 133 NLLLAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWD 210 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCC
Confidence 999999999999999999999999999887 444432 24999999999999999988877776654321 123444
Q ss_pred hhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-hhChhHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhhCCChh
Q 008290 349 NLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAA-RQGALAMAAHQICLQVWLSV-SMLADAQAASGQALIASSFAKGDYN 426 (571)
Q Consensus 349 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~-~lG~~~vaa~~i~~~i~~l~-~~i~~~l~~a~~~~vs~~~g~~~~~ 426 (571)
+..+|+++++|.|..++++...+....++.+++ .+|++++|+|+.+.++.... ..+..+++++..|.+++. +|++
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~ 287 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKR 287 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChH
Confidence 556799999999999999999999999999996 78999999999999997754 788999999999999995 6789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChhHHHH
Q 008290 427 TVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAY 506 (571)
Q Consensus 427 ~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 506 (571)
+.++..++.......++++.++++++++++++.+|.+|+ .+.+.+++++++++.++...+........+.++++....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 365 (416)
T PRK15099 288 DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYIL 365 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999866 333567899988888888887777777778888888777
Q ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 008290 507 SMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRL 550 (571)
Q Consensus 507 ~~~~~~l~~i~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l 550 (571)
..+...+...++++++++.+|..|++++..+++.+...+..+..
T Consensus 366 ~~~~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~ 409 (416)
T PRK15099 366 AEVSQFTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVF 409 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877788888888888999999999999999998887766554
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=1.5e-29 Score=268.34 Aligned_cols=389 Identities=15% Similarity=0.141 Sum_probs=346.2
Q ss_pred CCcch-hhhhchhHHHHHHHHHHhh-hhhhhHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCccchhhhhhhHHHHHH
Q 008290 142 LGPLE-LASAGVSTSIFNILSKVFN-IPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALV 219 (571)
Q Consensus 142 lg~~~-~aa~~~~~~~~~~~~~~~~-~gl~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 219 (571)
+|+.+ ..++.++.++.+++..++. .++.++..|..++.. +++ +|+.++..+..+.
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~----------------------~~~~~~f~~~~~~ 61 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKG----------------------EEEARRFISTLLT 61 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC----------------------HHHHHHHHHHHHH
Confidence 67654 6789999999999987764 346778888888876 544 7777888899989
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 008290 220 LALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSA 299 (571)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 299 (571)
+..++.++++++.+++++++++++....+++..+.+.+++++.++..++.++..+..+++|+++|...+....++.++..
T Consensus 62 ~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~ 141 (451)
T PF03023_consen 62 ILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSI 141 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999966555568899999999999999999999999999999999999999999988877
Q ss_pred HHHhHHHHhhcCcc---hhHHHHHHHHHHHHHHHHHHHHHHhcCcccCC--CcchhcHHHHHHhhHHHHHHHHHHHHHHH
Q 008290 300 VFMFPMLMYYFKLG---VTGAAISTVGSQYMVTLLMIWYLNKRTILSIP--NMKNLHFGDYLRSGGYLLGRTLAAVMTIT 374 (571)
Q Consensus 300 i~l~~~li~~~~~G---i~Gaa~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~p~~~~~~~~~~~~~ 374 (571)
++. +++.....| +.+.+++..++..++.++.+...+|.+...++ ++++.+.|++++...|.++.....++...
T Consensus 142 I~~--~~~~~~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~l 219 (451)
T PF03023_consen 142 ILS--LLLLSNSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSSSISQINIL 219 (451)
T ss_pred HHH--HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 763 333344577 99999999999999999999998887655444 45566789999999999999999999999
Q ss_pred HHHHHHHhhChhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008290 375 LSTSIAARQGALAMAAHQICLQVWLSVS-MLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGAS 453 (571)
Q Consensus 375 ~~~~ii~~lG~~~vaa~~i~~~i~~l~~-~i~~~l~~a~~~~vs~~~g~~~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~ 453 (571)
+++.+++.+++.++++++.+.++.+++. .+..+++++..|.++++..++|.++.++..++.++....+.+|.++.+..+
T Consensus 220 v~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~ 299 (451)
T PF03023_consen 220 VDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVL 299 (451)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988 567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcC----CChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccchh
Q 008290 454 FNYLATLFT----SDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAPRVFGLS 529 (571)
Q Consensus 454 ~~~i~~lf~----~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~l~~i~~~~~l~~~~Gi~ 529 (571)
++++++++. -|++..+.+...+.+++++.++.+++..+...+++.+|+|.+++.+++..+.++.+...+.+.+|..
T Consensus 300 a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~~g~~ 379 (451)
T PF03023_consen 300 AEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPFFGVA 379 (451)
T ss_pred hHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998875 2677889999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Q 008290 530 AVWWGLTLFMSLRVAAGYFRLLSKNG 555 (571)
Q Consensus 530 Gv~~a~~i~~~i~~~~~~~~l~~~~~ 555 (571)
|+++++.++..+..++.++.++++.+
T Consensus 380 Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 380 GLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999998888865543
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=1.4e-28 Score=256.66 Aligned_cols=422 Identities=13% Similarity=0.073 Sum_probs=364.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcch-hhhhchhHHHHHHHHHHhhhh-hhhHHHHHHHHHhhhccCCC
Q 008290 111 QLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLE-LASAGVSTSIFNILSKVFNIP-LLSVATSFVAEDISRSSSKD 187 (571)
Q Consensus 111 ~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~-lg~~~-~aa~~~~~~~~~~~~~~~~~g-l~~~~~~~vs~~~g~~~~~~ 187 (571)
...+++.++-.....+++.+.+++...+++. +|+.. .+|+.++..+.|++..++..| ++++..|...++..++.
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~--- 82 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEG--- 82 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcch---
Confidence 4567888888889999999999998888888 99965 678999999999999998877 47777888888766654
Q ss_pred CCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCC-CccchHHHHHHHHHHHhhH
Q 008290 188 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISS-ASSMRIPAQRFLSLRAIGA 266 (571)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~a~~~l~i~~~~~ 266 (571)
+|+.++.......+...+.+.++++..++++++++....+. |++....+....++.+|..
T Consensus 83 -------------------~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl 143 (518)
T COG0728 83 -------------------EEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYL 143 (518)
T ss_pred -------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHH
Confidence 45555566666657777777888888899999995554342 2122336888999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Q 008290 267 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPN 346 (571)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (571)
++..+.....+.+++.+|...+.+..++-++.-+.....+......-..+.++++.++-+++.++.+..++|.+...+++
T Consensus 144 ~~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~ 223 (518)
T COG0728 144 LFISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR 223 (518)
T ss_pred HHHHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC
Confidence 99999999999999999999999999998888885444443332224788999999999999999999999876555544
Q ss_pred c--chhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHhhCC
Q 008290 347 M--KNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVS-MLADAQAASGQALIASSFAKG 423 (571)
Q Consensus 347 ~--~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~lG~~~vaa~~i~~~i~~l~~-~i~~~l~~a~~~~vs~~~g~~ 423 (571)
+ ++.+.|++++...|..+.....++...+++.+++.+.+.+++.++.+.++.+++. .+..++++...|.+|++..++
T Consensus 224 ~~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~ 303 (518)
T COG0728 224 FGFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANG 303 (518)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4 4468899999999999999999999999999999999999999999999999999 779999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCC----ChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC
Q 008290 424 DYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTS----DTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVS 499 (571)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~----d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g 499 (571)
|+++.++..+++++++.++++|.++.+.++++++++++.. +++....+.+.+..++++.++..+..++...+++.+
T Consensus 304 ~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~ 383 (518)
T COG0728 304 DWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYARE 383 (518)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999988743 567788899999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008290 500 DFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSKN 554 (571)
Q Consensus 500 ~~~~~~~~~~~~~l~~i~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~ 554 (571)
|+|.++++..+..+.++.++.++.+.+|..|++++..++..+...+.++.++++.
T Consensus 384 d~ktP~~i~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 384 DTKTPMKIAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred CCCcChHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988888899999999999998888888887776443
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.96 E-value=7.9e-25 Score=236.52 Aligned_cols=396 Identities=12% Similarity=0.069 Sum_probs=325.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCC
Q 008290 111 QLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDST 189 (571)
Q Consensus 111 ~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~-lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~~~~ 189 (571)
.++..+-+....++++...+.+++...+++| +|++++|.++.+.++..+...+.+.|+.++.. | ++ ++
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~----~~-~~-- 72 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----Q----RQ-DI-- 72 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----h----cc-cC--
Confidence 4667788888999999999999999999999 99999999999999999999888888766542 1 11 00
Q ss_pred CCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhHHHH
Q 008290 190 SDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAV 269 (571)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~ 269 (571)
.+ +.....+.+.+..+++..++++.+++++..+++.+ + ....+++..+..++.
T Consensus 73 -----------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~------~~~~~~~~~~~~~~~ 125 (492)
T PRK10459 73 -----------------SH---LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHNP-E------LAPLIKTLSLAFVII 125 (492)
T ss_pred -----------------CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-h------hHHHHHHHHHHHHHH
Confidence 11 23455667777778777777778888877776543 2 345778888888888
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCcch
Q 008290 270 VLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKN 349 (571)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (571)
.+.....+.++..++.+......++..++..++...+.+ .++|+.+..++..++..+..++..+..+++ ...+++++.
T Consensus 126 ~~~~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~ 203 (492)
T PRK10459 126 PIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKI-YRPALHFSL 203 (492)
T ss_pred HHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhccc-CCccceecH
Confidence 888999999999999999998888887777766555443 478999999999999988776654433332 222333455
Q ss_pred hcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChhHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhhCCChhH
Q 008290 350 LHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQ-GALAMAAHQICLQVWLSVSM-LADAQAASGQALIASSFAKGDYNT 427 (571)
Q Consensus 350 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~l-G~~~vaa~~i~~~i~~l~~~-i~~~l~~a~~~~vs~~~g~~~~~~ 427 (571)
...|++++++.|.....+...+...+|+.+++++ |+++++.|+.+.++.+++.. +...++....|.+++. ++|.++
T Consensus 204 ~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~ 281 (492)
T PRK10459 204 ASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEK 281 (492)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHH
Confidence 6789999999999999999999999999998876 99999999999999887664 4555788999999985 688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChhHHHHH
Q 008290 428 VKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYS 507 (571)
Q Consensus 428 ~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 507 (571)
.++..++.+.+...+++|+++++.+++++++.++.+|+ ...+...++++++..++..+.......+++.||+|..++.
T Consensus 282 ~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~ 359 (492)
T PRK10459 282 LRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKW 359 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHH
Confidence 99999999999999999999999999999999887755 4557789999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 008290 508 MMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRL 550 (571)
Q Consensus 508 ~~~~~l~~i~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l 550 (571)
+.+..+..++..+...+.+|+.|+++++.+++.+.....++..
T Consensus 360 ~~~~~~~~i~~~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~ 402 (492)
T PRK10459 360 NVFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYFLM 402 (492)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877776666778999999999999998888777766
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.93 E-value=4.2e-22 Score=214.68 Aligned_cols=387 Identities=17% Similarity=0.169 Sum_probs=310.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC
Q 008290 110 VQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDS 188 (571)
Q Consensus 110 ~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~-lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~~~ 188 (571)
..+++.+.+.-...+++.+.+.+++....++| +|++++|.++.+.++..++..+...|+..+....++++..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~---- 79 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGE---- 79 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccH----
Confidence 45778888999999999999999999999999 9999999999999999999988888999998888888765554
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhh-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhHH
Q 008290 189 TSDSSCPNVSYNGCDESTDRKLLPS-VSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAP 267 (571)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~ 267 (571)
++..... ....+...+..+++.....+...+. ++ .....+++..++.+
T Consensus 80 ------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~ 128 (480)
T COG2244 80 ------------------YLLLILLSVLLLLLLALILLLLLLLIAYLLAPI-------DP------VLALLLRILSLALL 128 (480)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------Ch------hhHHHHHHHHHHHH
Confidence 3333333 4444444444443333333322211 12 24566788999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHH-hcCcccCCC
Q 008290 268 AVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLN-KRTILSIPN 346 (571)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~-~~~~~~~~~ 346 (571)
........++++|+.++.+..... .+...........+.. .......++...+......+...+.. ++++..+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (480)
T COG2244 129 LLPLSSVLRGLFQGFGRFGPLALS-IVSSIFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPI 204 (480)
T ss_pred HHHHHHHHHHHHHHHhhcccchhH-HHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 999999999999999999999888 4433111111122221 34555666666666666655555553 233223333
Q ss_pred cc--hhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCC
Q 008290 347 MK--NLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQ-GALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKG 423 (571)
Q Consensus 347 ~~--~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~l-G~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~vs~~~g~~ 423 (571)
++ ...+|++++.+.|.........+....|+.+++++ |+++++.|+.+.++......+..+++.+..|.+++.+.++
T Consensus 205 ~~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~ 284 (480)
T COG2244 205 LRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEG 284 (480)
T ss_pred cCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33 56788999999999999999999999999999877 8999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChhH
Q 008290 424 DYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSY 503 (571)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 503 (571)
|.++.++..++++++...+++|..+++.++++++..++.+++.. .+...+.++++..++..+.......+++.|+++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~ 362 (480)
T COG2244 285 DRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRL 362 (480)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchh
Confidence 99999999999999999999999999999999999998876632 2668899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHH
Q 008290 504 AAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTL 537 (571)
Q Consensus 504 ~~~~~~~~~l~~i~~~~~l~~~~Gi~Gv~~a~~i 537 (571)
.++.+.+..+.+..+++.+++.+|+.|...+...
T Consensus 363 ~~~~~~~~~i~~~~l~~~li~~~g~~g~~~a~~~ 396 (480)
T COG2244 363 LLLISLISALLNLILNLLLIPRFGLIGAAIATAS 396 (480)
T ss_pred hHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHH
Confidence 9999999999999999998899999999999933
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.89 E-value=6e-23 Score=219.37 Aligned_cols=281 Identities=14% Similarity=0.047 Sum_probs=239.2
Q ss_pred eecccCCCCCcccccccCCCCCcccccccccccccCCCccccCCC----CcccccccCCCCcc-------------ccc-
Q 008290 35 SMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINPS----GVGERLASDGGELS-------------NES- 96 (571)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~~~~~~~~-------------~~~- 96 (571)
|++.....++.+.|..+++...+.....+...|. ..||.+++.. +++..+++.++.++ .++
T Consensus 139 ~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni-~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~ 217 (464)
T PRK00187 139 PGYLSFMALRGFTSALGRAGPVMVISLAGAVANL-LLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPA 217 (464)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcch
Confidence 6677778889999999999999999888888888 8899877652 46777766655432 111
Q ss_pred -ccccccc--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhchhHHHHHHHHHHhhhhhhhHHH
Q 008290 97 -RKSAATS--QSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVAT 173 (571)
Q Consensus 97 -~~~~~~~--~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~ 173 (571)
++.+..+ ...+.+..|+++++++|.++.++++.....+++.+++++|++++|+++++.++..+.... ..|++++.+
T Consensus 218 ~~~~~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~-~~gi~~a~~ 296 (464)
T PRK00187 218 YAAYPLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMV-PVGLSYAVT 296 (464)
T ss_pred hhhhhhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 1112111 234556789999999999999999999999999999999999999999999999987744 559999999
Q ss_pred HHHHHHhhhccCCCCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCC--CCC-cc
Q 008290 174 SFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGI--SSA-SS 250 (571)
Q Consensus 174 ~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~-~~ 250 (571)
++++|++|++| ++++++..+.++.++.+++++.+++++++++++.+++.. +++ +|
T Consensus 297 ~lvgq~~Ga~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~ 354 (464)
T PRK00187 297 MRVGQHYGAGR----------------------LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAE 354 (464)
T ss_pred HHHHHHHcCCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHH
Confidence 99999999999 999999999999999999999999999999999999954 221 14
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHH-HHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHH
Q 008290 251 MRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGN-FSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVT 329 (571)
Q Consensus 251 ~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~ 329 (571)
+.+.+..|+++..++.++..++.+..+++|+.||++.+++..++.. ++++++++++.+.+++|+.|+|+++.+++.+..
T Consensus 355 v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~ 434 (464)
T PRK00187 355 IVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAA 434 (464)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999987 899999999998888999999999999999988
Q ss_pred HHHHHHHHhc
Q 008290 330 LLMIWYLNKR 339 (571)
Q Consensus 330 ~~~~~~~~~~ 339 (571)
+......+.+
T Consensus 435 ~~~~~~~~~~ 444 (464)
T PRK00187 435 VALTLAFEWK 444 (464)
T ss_pred HHHHHHHHHH
Confidence 8776655443
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.88 E-value=2.2e-22 Score=213.35 Aligned_cols=280 Identities=18% Similarity=0.235 Sum_probs=249.4
Q ss_pred eecccCCCCCcccccccCCCCCcccccccccccccCCCccccCC-CC-cccccccCCCCcc-------------cccc--
Q 008290 35 SMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINP-SG-VGERLASDGGELS-------------NESR-- 97 (571)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~-~~~~~~~~~~~~~-------------~~~~-- 97 (571)
|+...++.+..+.|.+++++..|..+..+...|. ..||.++.. .+ ++..+++.++-++ ++++
T Consensus 147 ~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNi-vln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~ 225 (455)
T COG0534 147 PFALLSFVLSGILRGLGDTKTPMYILLLGNLLNI-VLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLL 225 (455)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH-HhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 7888899999999999999999999999999999 999999887 46 8888888777653 2221
Q ss_pred ccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHH
Q 008290 98 KSA-ATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFV 176 (571)
Q Consensus 98 ~~~-~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~v 176 (571)
... ......+.+..|+++++++|..+.+++......+-+.+++++|++.+|+++++.++.++.... ..|+++++++++
T Consensus 226 ~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~-~~gi~~a~~~lv 304 (455)
T COG0534 226 SLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMP-PFGIAQAVTILV 304 (455)
T ss_pred hhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 222 233366778999999999999999999999999999999999999999999999999999955 459999999999
Q ss_pred HHHhhhccCCCCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHH
Q 008290 177 AEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQ 256 (571)
Q Consensus 177 s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 256 (571)
+|++|++| ++++++..+.++.++.+++++..++++++++++..+|..+++ +.+.+.
T Consensus 305 G~~~Ga~~----------------------~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~--v~~~~~ 360 (455)
T COG0534 305 GQNLGAGN----------------------YKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPE--VIALAV 360 (455)
T ss_pred HHHhCCCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHH
Confidence 99999999 999999999999999999999999999999999999998865 999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHH-HHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHH
Q 008290 257 RFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFS-AVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWY 335 (571)
Q Consensus 257 ~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~ 335 (571)
.++++..+..++.+++.+..+++||.||++.+++.++++... .+++.+++.+.. +|..|+|++...++.+..++..++
T Consensus 361 ~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~ 439 (455)
T COG0534 361 ILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLR 439 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999996544 566666666544 999999999999999999999988
Q ss_pred HHhcCc
Q 008290 336 LNKRTI 341 (571)
Q Consensus 336 ~~~~~~ 341 (571)
.+++++
T Consensus 440 ~~~~~~ 445 (455)
T COG0534 440 LRRGRW 445 (455)
T ss_pred HHHhhh
Confidence 877654
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.86 E-value=9.2e-20 Score=195.10 Aligned_cols=204 Identities=17% Similarity=0.124 Sum_probs=187.4
Q ss_pred cchhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCChh
Q 008290 347 MKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYN 426 (571)
Q Consensus 347 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~lG~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~vs~~~g~~~~~ 426 (571)
++...+|++++.++|.+++++.......+|+.+++++|++++|+++++.++..+...+..+++++..++++|++|++|++
T Consensus 23 ~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 23 YRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 34445789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcC--CChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChhHH
Q 008290 427 TVKEITHFALKTGLFTGVTLAVILGASFNYLATLFT--SDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYA 504 (571)
Q Consensus 427 ~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~--~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 504 (571)
++++..++++.++.+++++.+++.+++++++..+|. .|+|+.+.+.+|+++..++.++..+...+.+++|+.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 999999999999999999999999999999999995 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc------cccchhHHHHHHHHHHHHHHHHHHHHH
Q 008290 505 AYSMMAVGAISSVFLLYAP------RVFGLSAVWWGLTLFMSLRVAAGYFRL 550 (571)
Q Consensus 505 ~~~~~~~~l~~i~~~~~l~------~~~Gi~Gv~~a~~i~~~i~~~~~~~~l 550 (571)
++.+.+..+.++++.+.++ +++|+.|+|+|+.+++.+..++..+++
T Consensus 183 ~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~ 234 (478)
T PRK10189 183 LLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVL 234 (478)
T ss_pred HHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998887777766655443 368999999999999998887765544
No 19
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.85 E-value=2.8e-19 Score=189.52 Aligned_cols=203 Identities=12% Similarity=0.050 Sum_probs=188.3
Q ss_pred hhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCChhH
Q 008290 349 NLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQ-GALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNT 427 (571)
Q Consensus 349 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~l-G~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~vs~~~g~~~~~~ 427 (571)
+.+.|+++++++|.+++++.......+|+.+++++ |++++|+.+++.++..+...+..+++.+..+.+||++|++|+++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 34578999999999999999999999999999999 67899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChhHHHHH
Q 008290 428 VKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYS 507 (571)
Q Consensus 428 ~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 507 (571)
+++..++++.++.+++++.+++...+.+++..+++.|||+.+.+.+|+++..++.++..+..++.+++|+.||+|.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008290 508 MMAVGAISSVFLLYAPR--VFGLSAVWWGLTLFMSLRVAAGYFRLL 551 (571)
Q Consensus 508 ~~~~~l~~i~~~~~l~~--~~Gi~Gv~~a~~i~~~i~~~~~~~~l~ 551 (571)
+++..++++++.++++. .+|+.|+++++.+++.+..++..+++.
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~ 210 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVR 210 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888887776544 689999999999999988777655554
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.84 E-value=6.8e-19 Score=187.79 Aligned_cols=205 Identities=15% Similarity=0.034 Sum_probs=189.9
Q ss_pred hhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCChhH
Q 008290 349 NLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQ-GALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNT 427 (571)
Q Consensus 349 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~l-G~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~vs~~~g~~~~~~ 427 (571)
+...|++++.++|.+++++...+...+|+.+++++ |++++|+++++.++..+...+..+++.+..+.++|++|++|+|+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 34568999999999999999999999999999996 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChhHHHHH
Q 008290 428 VKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYS 507 (571)
Q Consensus 428 ~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 507 (571)
+++..++++.++.+++++.+++...+++++..+|+.|+++.+.+.+++++..++.++..+.....+++++.||++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 008290 508 MMAVGAISSVFLLYAPR--VFGLSAVWWGLTLFMSLRVAAGYFRLLSK 553 (571)
Q Consensus 508 ~~~~~l~~i~~~~~l~~--~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~ 553 (571)
+....+.++++.++++. ++|+.|+|+++.+++.+..++..++++++
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 88888888877666543 68999999999999999888776665433
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.83 E-value=3e-18 Score=183.38 Aligned_cols=203 Identities=13% Similarity=0.058 Sum_probs=188.4
Q ss_pred hhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCChhHH
Q 008290 349 NLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTV 428 (571)
Q Consensus 349 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~lG~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~vs~~~g~~~~~~~ 428 (571)
...+|+++++++|.+++.+.......+|+.+++++|++++++++++.++..+...+..+++.+..|.+|+++|++|++++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~~ 87 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRERI 87 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 45688999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChhHHHHHH
Q 008290 429 KEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSM 508 (571)
Q Consensus 429 ~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 508 (571)
++..++++.++++++++.+++++.+++++..++..|+++.+.+..++++.+++.++..+..++.+.+++.||++.+++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 167 (456)
T PRK01766 88 AHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIG 167 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhc------cccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008290 509 MAVGAISSVFLLYAP------RVFGLSAVWWGLTLFMSLRVAAGYFRLL 551 (571)
Q Consensus 509 ~~~~l~~i~~~~~l~------~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~ 551 (571)
.+..++++++.+.++ +.+|+.|+++++.+++.+..++..++.+
T Consensus 168 ~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~ 216 (456)
T PRK01766 168 FLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIK 216 (456)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877766554 3589999999999999988887776654
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.76 E-value=9.3e-16 Score=166.31 Aligned_cols=210 Identities=19% Similarity=0.238 Sum_probs=189.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 008290 107 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK 186 (571)
Q Consensus 107 ~~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~ 186 (571)
+.+..|++++.++|..++++...+...+|+.+.+++|++++++++.+..+.++...++..+++++..|.++|.+|++|
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~-- 295 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGN-- 295 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 556789999999999999999999999999885559999999999999999888766666899999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCC--CccchHHHHHHHHHHHh
Q 008290 187 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISS--ASSMRIPAQRFLSLRAI 264 (571)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~a~~~l~i~~~ 264 (571)
+++.++.++.++.....++++.++.++.+++++..++.+++ ++|....+..+++++++
T Consensus 296 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~ 355 (502)
T TIGR01695 296 --------------------WNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGL 355 (502)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999886543 33367789999999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008290 265 GAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRT 340 (571)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~ 340 (571)
+.++..++......+++.||++.+++..+.+.+++++++++++. .+|+.|+|+++.+++.+..++..++.+|+.
T Consensus 356 ~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 429 (502)
T TIGR01695 356 GLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRRL 429 (502)
T ss_pred HHHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999888864 489999999999999999999888877654
No 23
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.72 E-value=2e-15 Score=155.26 Aligned_cols=191 Identities=14% Similarity=0.165 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHH
Q 008290 361 YLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGL 440 (571)
Q Consensus 361 p~~~~~~~~~~~~~~~~~ii~~lG~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~vs~~~g~~~~~~~~~~~~~~l~~~~ 440 (571)
|.+++++...+...+++.+++++|++++++++++.++..+...+..+++++..|.+++++|++|+|++++..+..+.+..
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 008290 441 FTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLL 520 (571)
Q Consensus 441 ~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~l~~i~~~~ 520 (571)
+++++.+++++++++++..+++.|++..+.+.+++++++++.++.++.....+++++.||++..++.+.+..+..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~ 160 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNY 160 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999988888888999999999999999999999999999999999999988887777766655
Q ss_pred Hhcc---c-cchhHHHHHHHHHHHHHHHHHHHHHH
Q 008290 521 YAPR---V-FGLSAVWWGLTLFMSLRVAAGYFRLL 551 (571)
Q Consensus 521 ~l~~---~-~Gi~Gv~~a~~i~~~i~~~~~~~~l~ 551 (571)
.+.. + +|+.|+++++.+++++..+..+++++
T Consensus 161 ~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~ 195 (342)
T TIGR00797 161 ILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIK 195 (342)
T ss_pred HHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 3 56999999999999988887766654
No 24
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.72 E-value=2e-14 Score=142.38 Aligned_cols=270 Identities=17% Similarity=0.225 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCCC
Q 008290 115 IMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSS 193 (571)
Q Consensus 115 ~~~~~p~~~~~~~~~l~~~v~~~~l~~-lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~~~~~~~~ 193 (571)
.|.+.-...+++...+.+++...++.| +|++++|.++...++.+++..+...|+.++....+++...+
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~----------- 70 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK----------- 70 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-----------
Confidence 456677788999999999999999999 99999999999999999999887888888888777765432
Q ss_pred CCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhHHHHHHHH
Q 008290 194 CPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSL 273 (571)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~ 273 (571)
+++.+.+....+...++.+++..++. .+...++.++. ...+........++.....
T Consensus 71 -------------~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 126 (273)
T PF01943_consen 71 -------------KELRSAYFSSVLFLLLIFSLIFLLIL-----LIASFFGNPSL------SLILIILALLILILSSLSS 126 (273)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHcCCchH------HHHHHHHHHHHHHHHHHHH
Confidence 12233344444444443333333222 22224443332 2223322222335788888
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCcchhcHH
Q 008290 274 AIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFG 353 (571)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (571)
....++++.++.+......+...+...++...++.. ..++.+..++..++..+..++..++.+|+.+..+...++...|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (273)
T PF01943_consen 127 VFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRFSFFSKKFFK 205 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchHHHH
Confidence 999999999999999999999888887765555543 4458999999999999999888888876554333334466789
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 008290 354 DYLRSGGYLLGRTLAAVMTITLSTSIAARQ-GALAMAAHQICLQVWLSVSMLADAQAASGQALIASSF 420 (571)
Q Consensus 354 ~~l~~~~p~~~~~~~~~~~~~~~~~ii~~l-G~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~vs~~~ 420 (571)
++++.+.|..+..+...+....|..+++++ |++++|.|+++.++...+..+..++.++..|.+++.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 206 EILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999988 8999999999999999999999999999999999853
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.70 E-value=4.6e-17 Score=148.54 Aligned_cols=161 Identities=24% Similarity=0.413 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 008290 120 PAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSY 199 (571)
Q Consensus 120 p~~~~~~~~~l~~~v~~~~l~~lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~ 199 (571)
|.++++++..+...+++.+++++|++++++++++.++.++...+ ..|++++.++++||++|++|
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~-~~g~~~a~~~~~s~~~G~~~--------------- 64 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFML-IFGLATALQILISQNIGAGD--------------- 64 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCSSS---------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhh-cccccccccceeeccccccc---------------
Confidence 89999999999999999999999999999999999999999964 45999999999999999999
Q ss_pred CCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 008290 200 NGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIF 279 (571)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l 279 (571)
++++++.++.++.+.++++++.+++.+.+.+++..+++.|++ +.+.+.+|+++..++.++..+....++++
T Consensus 65 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 135 (162)
T PF01554_consen 65 -------YKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPE--VIEIARQYLRIMAFSIPFFALFFVFSGIL 135 (162)
T ss_dssp -------TTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTC--CHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_pred -------ccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHH--HHHHhhccchhhhhHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999998887 99999999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHH-HHHHHHhHH
Q 008290 280 RGFKDTRTPVFCLGLGN-FSAVFMFPM 305 (571)
Q Consensus 280 ~~~~~~~~~~~~~~~~~-~~~i~l~~~ 305 (571)
++.||++.+++.++... +++++++|+
T Consensus 136 ~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 136 QGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp GCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 99999999999999988 999998764
No 26
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.67 E-value=2.4e-14 Score=154.74 Aligned_cols=203 Identities=16% Similarity=0.255 Sum_probs=174.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcch------hhhh----chhHHHHHHHHHHhhhhhhhHHHHHH
Q 008290 108 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLE------LASA----GVSTSIFNILSKVFNIPLLSVATSFV 176 (571)
Q Consensus 108 ~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~-lg~~~------~aa~----~~~~~~~~~~~~~~~~gl~~~~~~~v 176 (571)
++..|++++.++|.+++++...+...+|+.++++ +++.+ .+.+ +++.++..++. ....+++++..|.+
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~-~~~~~l~~~~~p~~ 299 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPA-VITSSLSTALVPDI 299 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999998 54322 1222 34445566665 33447899999999
Q ss_pred HHHhhhccCCCCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHH
Q 008290 177 AEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQ 256 (571)
Q Consensus 177 s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 256 (571)
++.+|++| +++.++.+++.+.+...++++.++.+..+++++..++..+++ +.
T Consensus 300 s~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~------~~ 351 (488)
T TIGR02900 300 SEAMAKKN----------------------YSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD------AG 351 (488)
T ss_pred HHHHHcCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------hH
Confidence 99999988 888999999999999999999999999999999998875443 67
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHH
Q 008290 257 RFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYL 336 (571)
Q Consensus 257 ~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~ 336 (571)
+++++.+++.++..++....+++++.||+|.+++..+++.+++++++++++..+.+|+.|+|+++.+++.+..++..++.
T Consensus 352 ~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~ 431 (488)
T TIGR02900 352 NFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEI 431 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999998888755679999999999999999999988887
Q ss_pred Hhc
Q 008290 337 NKR 339 (571)
Q Consensus 337 ~~~ 339 (571)
+|.
T Consensus 432 ~~~ 434 (488)
T TIGR02900 432 KKN 434 (488)
T ss_pred HHH
Confidence 654
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.67 E-value=5.3e-17 Score=148.12 Aligned_cols=160 Identities=25% Similarity=0.334 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHH
Q 008290 361 YLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGL 440 (571)
Q Consensus 361 p~~~~~~~~~~~~~~~~~ii~~lG~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~vs~~~g~~~~~~~~~~~~~~l~~~~ 440 (571)
|.+++.+.......+++.+++++|++++++++++.++.++...+..|++++..+.+||++|++|++++++..++++.++.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHHH
Q 008290 441 FTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVG-AISSVFL 519 (571)
Q Consensus 441 ~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-l~~i~~~ 519 (571)
+++++.++++.++++++..+|++|+++.+.+.+++++..++.++.++.....+++++.||++.+++.+.... +..+++.
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 160 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLA 160 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988877 7777766
Q ss_pred H
Q 008290 520 L 520 (571)
Q Consensus 520 ~ 520 (571)
+
T Consensus 161 y 161 (162)
T PF01554_consen 161 Y 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 28
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.66 E-value=9.3e-14 Score=147.67 Aligned_cols=210 Identities=18% Similarity=0.229 Sum_probs=192.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 008290 108 QNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 187 (571)
Q Consensus 108 ~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~~ 187 (571)
.+..|++++...|.+++.....+..++|+.+.+.+++.++++++.+..+.+++..++..+++++.-|..|+...++|
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d--- 270 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGD--- 270 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 34589999999999999999999999999999999999999999999999999999988999999999999999888
Q ss_pred CCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCC--CCCccchHHHHHHHHHHHhh
Q 008290 188 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGI--SSASSMRIPAQRFLSLRAIG 265 (571)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~a~~~l~i~~~~ 265 (571)
.++.++.+++++...+.+.++.++.++.+++++++++.+ .-+.+-.+.....+++++++
T Consensus 271 -------------------~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~ 331 (451)
T PF03023_consen 271 -------------------WEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALG 331 (451)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999997742 22223467788999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 008290 266 APAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTI 341 (571)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~ 341 (571)
+|+.+++..+...+.+++|+|.|+..++++.++|++++.++.. .+|..|.++++.++.++..++.+++++|+..
T Consensus 332 l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 332 LPFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred hHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999877664 6999999999999999999999998887764
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.62 E-value=2.2e-12 Score=135.51 Aligned_cols=230 Identities=17% Similarity=0.172 Sum_probs=198.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC
Q 008290 109 NVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDS 188 (571)
Q Consensus 109 ~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~~~ 188 (571)
+..|++.+...|+.++...+.+..++|+.+-+.+.+...+.+..+.-++++...+++..+++..-|..|+...++|
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~---- 304 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGD---- 304 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCC----
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCC--ccchHHHHHHHHHHHhhH
Q 008290 189 TSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSA--SSMRIPAQRFLSLRAIGA 266 (571)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~a~~~l~i~~~~~ 266 (571)
.++.++..+.++.+.+.+.++.++.+..+++|+++.+....+ ++-...+.+.++.+.+|+
T Consensus 305 ------------------~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL 366 (518)
T COG0728 305 ------------------WPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGL 366 (518)
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhh
Confidence 888889999999999999999999999999999998844332 123556778999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Q 008290 267 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPN 346 (571)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (571)
++..+..++...+.+.+|+|.|+.+.+++.++|+.++..++. .+|..|.++++.++.++.+.+.++.++|+....+ .
T Consensus 367 ~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~-~ 443 (518)
T COG0728 367 IPFALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP-G 443 (518)
T ss_pred HHHHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c
Confidence 999999999999999999999999999999999999966654 5788889999999999999999888887765333 3
Q ss_pred cchhcHHHHHHhhHHHHH
Q 008290 347 MKNLHFGDYLRSGGYLLG 364 (571)
Q Consensus 347 ~~~~~~~~~l~~~~p~~~ 364 (571)
..+..+. ..|..+-..+
T Consensus 444 ~~~~~~~-~~k~~l~~~i 460 (518)
T COG0728 444 RGWGLFL-ILKLLLASAI 460 (518)
T ss_pred chhhHHH-HHHHHHHHHH
Confidence 3333333 4554443333
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.56 E-value=1e-11 Score=134.39 Aligned_cols=203 Identities=16% Similarity=0.073 Sum_probs=172.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 008290 107 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSS 185 (571)
Q Consensus 107 ~~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~-lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~ 185 (571)
+.+..|++++++.|.+.+++...+...+|+.++|+ +|++++|.|+.+..+.+++...++..+.+...|..++. ++|
T Consensus 202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~- 278 (492)
T PRK10459 202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDD- 278 (492)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCC-
Confidence 34568999999999999999999999999999999 99999999999999988876666544556677777764 333
Q ss_pred CCCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhh
Q 008290 186 KDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIG 265 (571)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~ 265 (571)
+++.++.+.+.+.....+++++++.+...+++++.++.+++ ...+...++++.++
T Consensus 279 ---------------------~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~----~~~a~~~l~il~~~ 333 (492)
T PRK10459 279 ---------------------TEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK----WNSAIPILQLLCIV 333 (492)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh----HHhHHHHHHHHHHH
Confidence 67788889999999999999999999999999998776543 46688999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 008290 266 APAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKR 339 (571)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~ 339 (571)
..+..+.......+++.||+|.++..+++..++.++..+++. ..+|+.|+++++.+++.+..++..++..|+
T Consensus 334 ~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 334 GLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988888888877554444 357999999999999999988888877554
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.54 E-value=1.7e-11 Score=120.03 Aligned_cols=247 Identities=15% Similarity=0.177 Sum_probs=181.0
Q ss_pred HHHHHHHHHhhc-CCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCccchh
Q 008290 130 MAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDR 208 (571)
Q Consensus 130 l~~~v~~~~l~~-lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (571)
..+++...+++| +|++++|.++...++..+...+...|+.+.... . .+++ ++
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~----------------------~~ 54 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARD----------------------KQ 54 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccC----------------------HH
Confidence 356777888999 999999999999999998887766665444433 1 1122 44
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCchhH
Q 008290 209 KLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTP 288 (571)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 288 (571)
+.++..+..+...++++++..++ ...+..+++. ++ ...++.+..+..++.......+.++++.+|.+..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (251)
T PF13440_consen 55 DIRSLLRFSLLVSLLLAVILAIL----AILIAYFFGD-PE------LFWLLLLLALAIFFSALSQLFRSILRARGRFRAY 123 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCC-hh------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 55555555555544444333332 2333334432 22 3456667778888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCcchhcHHHHHHhhHHHHHHHHH
Q 008290 289 VFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTILSIPNMKNLHFGDYLRSGGYLLGRTLA 368 (571)
Q Consensus 289 ~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~ 368 (571)
....+...+...++...+.+ .+.++.+..++..++..+..++.....+++. +.+. +.+.++.++.+.|.....+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~ 198 (251)
T PF13440_consen 124 ALIDIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLRRKL---RLSF-KFSWRRLLKYGLPFSLSSLL 198 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhcccc---CCCc-hhhHHHHHHHHHHHHHHHHH
Confidence 99999988877444333333 3448889999999998888877766444332 2222 22333479999999999999
Q ss_pred HHHHHHHHHHHHHh-hChhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Q 008290 369 AVMTITLSTSIAAR-QGALAMAAHQICLQVWLSVS-MLADAQAASGQALIASS 419 (571)
Q Consensus 369 ~~~~~~~~~~ii~~-lG~~~vaa~~i~~~i~~l~~-~i~~~l~~a~~~~vs~~ 419 (571)
.+.....+..+++. +|++++|.|+++.++...+. .+..++++...|.++|+
T Consensus 199 ~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 199 SWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999998 79999999999999999888 89999999999998873
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.53 E-value=1.1e-12 Score=138.81 Aligned_cols=202 Identities=11% Similarity=0.008 Sum_probs=172.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 008290 106 CVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSS 184 (571)
Q Consensus 106 ~~~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~-lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~ 184 (571)
.+++..|++++.++|.+++++...+...+|+.++++ +|++++|.|+.+..+.+.+......+++++.+|.+++. +|
T Consensus 209 ~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~ 285 (416)
T PRK15099 209 WDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TE 285 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC
Confidence 456678999999999999999999999999999985 99999999999999988664455668999999999984 33
Q ss_pred CCCCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHh
Q 008290 185 SKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAI 264 (571)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~ 264 (571)
+++.++.++..+.....++.+.++.+++++++++.++.+++ .+.+.+++++..+
T Consensus 286 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~----~~~~~~~~~~l~~ 339 (416)
T PRK15099 286 ----------------------KRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK----FTAMRDLFAWQLV 339 (416)
T ss_pred ----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHH
Confidence 56677788888888888898888888899999999998764 3447889999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008290 265 GAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNK 338 (571)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~ 338 (571)
+.++...+......+.+.++.+......+...+++++++++++. .+|..|+++++++++.+...+..+...+
T Consensus 340 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 340 GDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888877777778888888888888888899998888775 5899999999999999999887765543
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.41 E-value=8.7e-11 Score=126.72 Aligned_cols=188 Identities=18% Similarity=0.239 Sum_probs=168.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 008290 107 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSS 185 (571)
Q Consensus 107 ~~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~-lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~ 185 (571)
..+..|++++.++|..++++...+.+.+|+.++++ +|++++|.|+.+..+......+.+ .+....-|.+++.+.+++
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~-~l~~~l~P~~s~~~~~~~- 285 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVAS-ALNRVLFPALSRAYAEGD- 285 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHH-HHHHHHHHHHHHHHHcCc-
Confidence 35789999999999999999999999999999999 999999999977777777775544 799999999999999887
Q ss_pred CCCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhh
Q 008290 186 KDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIG 265 (571)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~ 265 (571)
.++.++...+.+.....++++..+.+..+++|+..++..++. ..+...++++.++
T Consensus 286 ---------------------~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~----~~~~~~l~il~~~ 340 (480)
T COG2244 286 ---------------------RKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY----ASAAPILQLLALA 340 (480)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc----cchhHHHHHHHHH
Confidence 788888999999999999999999999999999997766653 2378899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHH
Q 008290 266 APAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGS 324 (571)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~ 324 (571)
.++..+.......+++.++.+..+..+.++.+++++++++++. .+|+.|++.++ .+
T Consensus 341 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~ 396 (480)
T COG2244 341 GLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLIP--RFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence 9999999999999999999999999999999999999888875 58999999999 44
No 34
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=2.7e-06 Score=85.88 Aligned_cols=413 Identities=15% Similarity=0.093 Sum_probs=233.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 008290 109 NVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKD 187 (571)
Q Consensus 109 ~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~-lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~~ 187 (571)
+...+..+.+.-.+..|++..+.++.-+.++-| ++++.+|-.++-..+. +++.-+.++.-=+...-+
T Consensus 5 ~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL------------~sTiLFlsREair~A~l~ 72 (530)
T KOG2864|consen 5 SVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELL------------QSTILFLSREAIRLAELR 72 (530)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHH------------HHHHHHhhHHHHHHHhcc
Confidence 355666777888899999999999997777777 9998776654433222 222333333221111000
Q ss_pred CCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhHH
Q 008290 188 STSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAP 267 (571)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~ 267 (571)
+.. +.. | +.++.. +..+++..++.+..+.+..+-- .+....++....+.-...+.+...++.
T Consensus 73 ~gs------~~~---d--~~te~~----n~~wlS~~L~~~i~~~~i~~wl---~~~~s~d~i~~~p~y~~~I~~~~~S~v 134 (530)
T KOG2864|consen 73 IGS------EPA---D--TWTEFI----NLLWLSVPLQTAINVACIYFWL---GFLSSSDEISYSPLYAFAIFIIGLSIV 134 (530)
T ss_pred CCC------CCC---c--cHHHHH----HhhhhhhhHHHHHHHHHHHHHH---HHhhccchhhcCchHhHHHHHHHHHHH
Confidence 000 000 0 133333 3344444444444333222211 111111110011122222333333333
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH-HHHhHHHHhhc-CcchhHHHHHHHHHHHHHHH-HHHHHHHhcCc-c-
Q 008290 268 AVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSA-VFMFPMLMYYF-KLGVTGAAISTVGSQYMVTL-LMIWYLNKRTI-L- 342 (571)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-i~l~~~li~~~-~~Gi~Gaa~a~~~~~~~~~~-~~~~~~~~~~~-~- 342 (571)
.-.+...+.-..|..-+.+.-.+...+..++. ++....++.++ .+++.--|+|-......-.+ ..+.|++.++. +
T Consensus 135 vELlsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~ 214 (530)
T KOG2864|consen 135 VELLSEPLYIVSQCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPE 214 (530)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 33333333333444444444555555555555 33323333333 34444444444433332222 12233333330 0
Q ss_pred ----------cCCCcch---hcH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh---ChhHHHHHHHHHHHHHHHH-Hh
Q 008290 343 ----------SIPNMKN---LHF-GDYLRSGGYLLGRTLAAVMTITLSTSIAARQ---GALAMAAHQICLQVWLSVS-ML 404 (571)
Q Consensus 343 ----------~~~~~~~---~~~-~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~l---G~~~vaa~~i~~~i~~l~~-~i 404 (571)
++...++ ..+ ++.++.-.....+.+.-.+...-+..+++.. .-++=|.|.+..+.-++.. ++
T Consensus 215 ~~~~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~i 294 (530)
T KOG2864|consen 215 TEPFSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLI 294 (530)
T ss_pred ccchhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHH
Confidence 0000000 011 3445554445556666666666666666533 4456788999999888877 67
Q ss_pred HHHHHHHHHHHHHHHhhCCChhHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 008290 405 ADAQAASGQALIASSFAKGDYNTVKEI---THFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSAS 481 (571)
Q Consensus 405 ~~~l~~a~~~~vs~~~g~~~~~~~~~~---~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~ 481 (571)
...+=.......+|...+++.|+.|+. ..+.+++...+++.....-...++....++.++.-........++++++.
T Consensus 295 F~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclY 374 (530)
T KOG2864|consen 295 FRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLY 374 (530)
T ss_pred hChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHH
Confidence 778888888888888888777766654 46667777777777777777778888888865433223345789999999
Q ss_pred hHHHHHHHHHHHHHHhcCChhHHHH---HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008290 482 QPVTAVAYIFDGLHYGVSDFSYAAY---SMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLL 551 (571)
Q Consensus 482 ~~~~~~~~~~~~~l~~~g~~~~~~~---~~~~~~l~~i~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~ 551 (571)
.++.+++.+.+++..+.++.+..-. ..+..++......+++...+|..|..+|..+.+.++.+...+..+
T Consensus 375 I~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~ 447 (530)
T KOG2864|consen 375 IPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFIR 447 (530)
T ss_pred HHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998776543 444555666666777777899999999999999988877755554
No 35
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.98 E-value=1.7e-06 Score=93.27 Aligned_cols=298 Identities=11% Similarity=-0.009 Sum_probs=196.3
Q ss_pred HHHHHHHHHhhHHHHHH----HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhc-Ccch------hHHHHHHHH
Q 008290 255 AQRFLSLRAIGAPAVVL----SLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYF-KLGV------TGAAISTVG 323 (571)
Q Consensus 255 a~~~l~i~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~-~~Gi------~Gaa~a~~~ 323 (571)
....+.++..+...-.+ ....+..+.-..|.+.-........+++..+........ +++. .-+.++..+
T Consensus 131 ~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Fal 210 (549)
T PF04506_consen 131 FEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLRVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFAL 210 (549)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhheeeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHH
Confidence 33444455544444333 334455555556666666666666666655433322110 1111 122345555
Q ss_pred HHHHHHHHHHHHHH--h-cC-c---ccCCCcch------hcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--h-ChhH
Q 008290 324 SQYMVTLLMIWYLN--K-RT-I---LSIPNMKN------LHFGDYLRSGGYLLGRTLAAVMTITLSTSIAAR--Q-GALA 387 (571)
Q Consensus 324 ~~~~~~~~~~~~~~--~-~~-~---~~~~~~~~------~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~--l-G~~~ 387 (571)
++....+....... . .. + ...++... .--+++++.......+.+.-.+..+-+..+++. + ..++
T Consensus 211 gq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~ 290 (549)
T PF04506_consen 211 GQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFED 290 (549)
T ss_pred HHHHHHHHHHhhHHhhccCcccchhhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHH
Confidence 66555433322111 1 11 0 11111111 112678888888888888889999999988887 4 6889
Q ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHhhCCCh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008290 388 MAAHQICLQVWLSVS-MLADAQAASGQALIASSFAKGDY---------NTVKEITHFALKTGLFTGVTLAVILGASFNYL 457 (571)
Q Consensus 388 vaa~~i~~~i~~l~~-~i~~~l~~a~~~~vs~~~g~~~~---------~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i 457 (571)
=|.|++++|+-+++. .+...+=.+.....++...+++. +++.+.....+++...++++....-...++.+
T Consensus 291 QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~l 370 (549)
T PF04506_consen 291 QGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLL 370 (549)
T ss_pred hhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHH
Confidence 999999999999888 66778999998889988766543 44667777888888888888887778888888
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChhHHHHHH---HHHHHHHHHHHHHhcc-ccchhHHHH
Q 008290 458 ATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSM---MAVGAISSVFLLYAPR-VFGLSAVWW 533 (571)
Q Consensus 458 ~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~---~~~~l~~i~~~~~l~~-~~Gi~Gv~~ 533 (571)
..++.++..........+++++...++.+++.+.+.+.++..+.+....-+ ...++......+.+.. .+|..|+.+
T Consensus 371 L~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~ 450 (549)
T PF04506_consen 371 LRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLIL 450 (549)
T ss_pred HHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence 888755332223346889999999999999999999999999986654422 2333444444455555 589999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 008290 534 GLTLFMSLRVAAGYFRLLS 552 (571)
Q Consensus 534 a~~i~~~i~~~~~~~~l~~ 552 (571)
|..+.+.++.+..+++.++
T Consensus 451 AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 451 ANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999888777643
No 36
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=98.96 E-value=3.9e-08 Score=104.26 Aligned_cols=200 Identities=12% Similarity=0.004 Sum_probs=178.6
Q ss_pred hcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhhCCChhHH
Q 008290 350 LHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSV-SMLADAQAASGQALIASSFAKGDYNTV 428 (571)
Q Consensus 350 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~lG~~~vaa~~i~~~i~~l~-~~i~~~l~~a~~~~vs~~~g~~~~~~~ 428 (571)
...|++.+++.|..+..+.......+...+++++|+.++|+.+++....+.. +.+..++..+..|.++|++|+++++..
T Consensus 25 ~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~l 104 (473)
T KOG1347|consen 25 TESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTAL 104 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccchh
Confidence 4557899999999999999999999999999999999999999999887764 467889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChhHHHHHH
Q 008290 429 KEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSM 508 (571)
Q Consensus 429 ~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 508 (571)
....+++..+....+++.+. ++.+.+++...+..||++...+..+.++.....+-......+...+++.+++....++.
T Consensus 105 g~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 105 GVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999888888888775 55566999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHHHHHHHHHH
Q 008290 509 MAVGAISSVFLLYAP--RVFGLSAVWWGLTLFMSLRVAAGYFRL 550 (571)
Q Consensus 509 ~~~~l~~i~~~~~l~--~~~Gi~Gv~~a~~i~~~i~~~~~~~~l 550 (571)
....+..+++.+.+. .++|..|+.++..+++.+.......+.
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi 227 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYA 227 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHh
Confidence 888888887776544 568899999999999988777666555
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.65 E-value=6e-05 Score=73.33 Aligned_cols=313 Identities=12% Similarity=0.040 Sum_probs=179.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--cch-hhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 008290 107 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLG--PLE-LASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRS 183 (571)
Q Consensus 107 ~~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~lg--~~~-~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~ 183 (571)
....+..+.++-+|..++.+...+.--+-+.-++|-. +.+ +|+||++.++.-++..... -+-+. +-.++.+
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~-~~~~i-----gl~~V~s 79 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLS-MFHHI-----GLVFVNS 79 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhh-hhHHH-----HHHHhcc
Confidence 3456789999999999999999999888888888732 223 8999999988777664332 23333 3333333
Q ss_pred cCCCCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHH-HhhHH-HHHHhCCCCCccchHHHHHHHHH
Q 008290 184 SSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMY-FGSGL-FLDIMGISSASSMRIPAQRFLSL 261 (571)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~-i~~~~~~~~~~~~~~~a~~~l~i 261 (571)
+ +++. +.+......+.+...+..++.+ ....+ +..+++.+++ +.+.++..+.+
T Consensus 80 ~----------------------rsrr-~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~--va~~tr~a~l~ 134 (345)
T PF07260_consen 80 K----------------------RSRR-KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPS--VAEKTRRAFLY 134 (345)
T ss_pred h----------------------hhhH-HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHH--HHHHHHHHHHH
Confidence 2 1111 1222222222222222222222 22223 3346677776 99999999999
Q ss_pred HHhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhc-------CcchhHHHHHHHHHHHHHHHHHHH
Q 008290 262 RAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYF-------KLGVTGAAISTVGSQYMVTLLMIW 334 (571)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~-------~~Gi~Gaa~a~~~~~~~~~~~~~~ 334 (571)
+.+--++.++....++++--.+++......++...+..+++..+++... ..++.|.-.+..+-.....+.++.
T Consensus 135 L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~ 214 (345)
T PF07260_consen 135 LTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQ 214 (345)
T ss_pred HHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998777777776666666666665545555331 122222222222211111111111
Q ss_pred HHHhcCccc-CC-CcchhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh--C----hhHHHHHHHHHHHHHHHHHhHH
Q 008290 335 YLNKRTILS-IP-NMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQ--G----ALAMAAHQICLQVWLSVSMLAD 406 (571)
Q Consensus 335 ~~~~~~~~~-~~-~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~l--G----~~~vaa~~i~~~i~~l~~~i~~ 406 (571)
-+..+.... .. +.+...+++++++.+|.+.......++--+.+.+++|. | ++++|+..+.+.+--+.+....
T Consensus 215 ~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~ 294 (345)
T PF07260_consen 215 SIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLT 294 (345)
T ss_pred HHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHH
Confidence 222222111 11 33344678999999999999999999999999999984 3 3667766655554333332211
Q ss_pred HHHHHHHHHHHHHhhCCChhH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 008290 407 AQAASGQALIASSFAKGDYNT-----VKEITHFALKTGLFTGVTLAVILG 451 (571)
Q Consensus 407 ~l~~a~~~~vs~~~g~~~~~~-----~~~~~~~~l~~~~~i~~~~~~~l~ 451 (571)
-+ -+..|..-+.--+++..+ -+...++....+.++++.++..++
T Consensus 295 ~~-r~~~paf~~~~~~~~~~~~~~~v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 295 EL-RAVYPAFDKNNPQNKLRNCGNPVTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred hH-HhhCchhhccCcccccccccCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 123333322111111111 223566666667766666665543
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.34 E-value=6.5e-05 Score=66.80 Aligned_cols=81 Identities=25% Similarity=0.406 Sum_probs=74.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008290 259 LSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNK 338 (571)
Q Consensus 259 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~ 338 (571)
+++.+++.++..++......+++.||++..+...+.+.++|++++++++ +.+|..|+++++.+++.+..++..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999986 46999999999999999999999888877
Q ss_pred cCc
Q 008290 339 RTI 341 (571)
Q Consensus 339 ~~~ 341 (571)
+.+
T Consensus 80 ~~~ 82 (146)
T PF14667_consen 80 KIG 82 (146)
T ss_pred HhC
Confidence 653
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.27 E-value=0.00019 Score=77.52 Aligned_cols=216 Identities=12% Similarity=0.089 Sum_probs=174.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--C-CcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 008290 110 VQLDLIMLSLPAIAGQAIEPMAQLMETAYIGR--L-GPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK 186 (571)
Q Consensus 110 ~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~--l-g~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~ 186 (571)
.-+++++++...+...+.-.+.+=-|..++.. + ..++.|.|++++++-+++.-+.-.++--..-...++...+++.+
T Consensus 251 fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~ 330 (549)
T PF04506_consen 251 FDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSK 330 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCch
Confidence 34788999999999999999999999999998 4 55779999999999998876666688888888888887765532
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhH
Q 008290 187 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGA 266 (571)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~ 266 (571)
+++ ++++.++..+.+...+.+...+|+++.......++.++.+++++.= ....+...+++++..+
T Consensus 331 ~~~-------------~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w--~~~~~~~~l~~yc~yi 395 (549)
T PF04506_consen 331 KKQ-------------PQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRW--SSTSAPSLLRAYCYYI 395 (549)
T ss_pred hhc-------------cchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcc--cCCCchHHHHHHHHHH
Confidence 221 2233677888999999999999999999999999999999876542 2344688999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHH---HHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 008290 267 PAVVLSLAIQGIFRGFKDTRTPVFC---LGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTI 341 (571)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~ 341 (571)
|+.++|.+..+++++....+..... .++..++.+..+++++.. ++|..|..+|..+...+-.++.+.+++|..+
T Consensus 396 ~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~ 472 (549)
T PF04506_consen 396 PFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRYFR 472 (549)
T ss_pred HHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998876655443 344556667777888766 7999999999999999999999988876543
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.06 E-value=0.0013 Score=64.66 Aligned_cols=184 Identities=16% Similarity=0.143 Sum_probs=110.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH-hhChhHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhhCCChhHHHHHHHH
Q 008290 357 RSGGYLLGRTLAAVMTITLSTSIAA-RQGALAMAAHQICLQVWLSVSML-ADAQAASGQALIASSFAKGDYNTVKEITHF 434 (571)
Q Consensus 357 ~~~~p~~~~~~~~~~~~~~~~~ii~-~lG~~~vaa~~i~~~i~~l~~~i-~~~l~~a~~~~vs~~~g~~~~~~~~~~~~~ 434 (571)
|-................+...++. .+|+++.+.++....+.++...+ ..|+.++..-.+++...+ .+..++....
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~ 80 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSS 80 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHH
Confidence 4444555566666555555555555 45999999999999998888866 677888888877776432 3333444443
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008290 435 ALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAI 514 (571)
Q Consensus 435 ~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~l~ 514 (571)
......+.++.......+.. .+. +++... .+........++.........++++.++.+..........+.
T Consensus 81 ~~~~~~~~~~i~~~~~~~~~-----~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 81 VLFLLLIFSLIFLLILLIAS-----FFG-NPSLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HcC-CchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333332222222222 333 333321 122222222257788888999999999988887777766555
Q ss_pred HHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008290 515 SSVFLLYAP-RVFGLSAVWWGLTLFMSLRVAAGYFRLL 551 (571)
Q Consensus 515 ~i~~~~~l~-~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~ 551 (571)
......... ...++.+..++..++.++.....++..+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (273)
T PF01943_consen 152 SLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLR 189 (273)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443332222 2344888888888888888777766664
No 41
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.03 E-value=0.0021 Score=62.51 Aligned_cols=161 Identities=16% Similarity=0.176 Sum_probs=105.1
Q ss_pred HHHHHhhChhHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008290 377 TSIAARQGALAMAAHQICLQVWLSVSML-ADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFN 455 (571)
Q Consensus 377 ~~ii~~lG~~~vaa~~i~~~i~~l~~~i-~~~l~~a~~~~vs~~~g~~~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~ 455 (571)
..+...+|+++.+.|+....+..+...+ ..|+.....- ..++|.++.++..+..+....+.+++..++..
T Consensus 9 ~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 79 (251)
T PF13440_consen 9 ILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAI---- 79 (251)
T ss_pred HHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3444556999999999999998887776 3444444433 23466777777777666555555444443322
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH-HHHHhccccchhHHHHH
Q 008290 456 YLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSV-FLLYAPRVFGLSAVWWG 534 (571)
Q Consensus 456 ~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~l~~i~-~~~~l~~~~Gi~Gv~~a 534 (571)
.+...+ ++++. ..++.+..+..++..........+++.+|.+..........+.... .........++.+..++
T Consensus 80 ~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (251)
T PF13440_consen 80 LIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNLWSILLA 154 (251)
T ss_pred HHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 222233 44433 2456667777888899999999999999999988877766554422 22222223478888889
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008290 535 LTLFMSLRVAAGYFRLL 551 (571)
Q Consensus 535 ~~i~~~i~~~~~~~~l~ 551 (571)
..++.++.....++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 155 FIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88888877766655443
No 42
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.93 E-value=8e-05 Score=66.23 Aligned_cols=80 Identities=5% Similarity=0.023 Sum_probs=73.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008290 475 LLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYFRLLSKN 554 (571)
Q Consensus 475 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~l~~i~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~ 554 (571)
+++++++.++.++.......+++.||+|..++.+....++++++++.+++.+|..|+++++.+++.....+..+..+++.
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~~ 81 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYVRKKI 81 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999999999999999999989999999999999999999888887776543
No 43
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.79 E-value=0.052 Score=54.34 Aligned_cols=338 Identities=11% Similarity=0.046 Sum_probs=182.6
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 008290 156 IFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFG 235 (571)
Q Consensus 156 ~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (571)
....++.+++.|+....+..+|...=+++ .+++...+.-...+....+..+..+.+
T Consensus 68 Y~~ifS~IiTgg~q~iiTRfiSD~lF~k~----------------------~~kIlpsy~Gvi~lv~~~a~~ig~~vf-- 123 (467)
T COG4267 68 YCFIFSQIITGGFQLIITRFISDCLFEKK----------------------QRKILPSYIGVILLVTLVAGVIGLIVF-- 123 (467)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH----------------------HHHHhHhHHHHHHHHHHHHHHHHHHhh--
Confidence 33444556666788888888888877776 666655555555555444444442211
Q ss_pred hHHHHHHhCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhhcCcchh
Q 008290 236 SGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYYFKLGVT 315 (571)
Q Consensus 236 ~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~ 315 (571)
..+++. ...|=..............+...++.+.+|.+.....-.++.++.+++...+- +.++.
T Consensus 124 ------~~~~~~-------si~yk~l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie 187 (467)
T COG4267 124 ------FVNNQY-------SIVYKILACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIE 187 (467)
T ss_pred ------hhcCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHH
Confidence 112222 22333344445556677778889999999999998888889999888766654 46999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcc-cCCCcchhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--hChhHHH---
Q 008290 316 GAAISTVGSQYMVTLLMIWYLNKRTIL-SIPNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAAR--QGALAMA--- 389 (571)
Q Consensus 316 Gaa~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~--lG~~~va--- 389 (571)
|.-++..++..+..+....++.|..+. .+..++.... .+.-...++......+...++..+.=. .|.+..+
T Consensus 188 ~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~i~FdFL~~---~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~ 264 (467)
T COG4267 188 GLLLTLDIGIFIILFLLNFYILRYFKSSRRIGFDFLLY---RRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFF 264 (467)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhcccccccceehhhh---hhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeeccee
Confidence 999999999999988888877664322 1222222221 111112234444555555555543311 1211111
Q ss_pred ---HHHHHHHHHH---HHHHhH--HHHHHHHHHHHHHHh----hC-------CChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008290 390 ---AHQICLQVWL---SVSMLA--DAQAASGQALIASSF----AK-------GDYNTVKEITHFALKTGLFTGVTLAVIL 450 (571)
Q Consensus 390 ---a~~i~~~i~~---l~~~i~--~~l~~a~~~~vs~~~----g~-------~~~~~~~~~~~~~l~~~~~i~~~~~~~l 450 (571)
.|-+..-... ++.+.. ..+-+..++.--+.+ |. ++.++.....++.+.-..-+=...++.+
T Consensus 265 ~S~lYDvpiF~ayl~~iPs~vvF~i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~ 344 (467)
T COG4267 265 ASPLYDVPIFYAYLFIIPSMVVFLISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLC 344 (467)
T ss_pred cchhhhHHHHHHHHHhcchhheeeeeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 122111 111122222211111 11 2233444555666666666677788889
Q ss_pred HHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHh---ccccc
Q 008290 451 GASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYA---PRVFG 527 (571)
Q Consensus 451 ~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~l~~i~~~~~l---~~~~G 527 (571)
+++++.+...+.-|+.. .+...+-.++.........+-.+.--..+-+..+..+.+..+.+..+.++. .+.+-
T Consensus 345 flL~~~Ll~~~~lS~~~----l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fli~N~ilT~i~l~lgp~~~ 420 (467)
T COG4267 345 FLLADALLLWFGLSEYY----LDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFLISNGILTFIFLELGPGYY 420 (467)
T ss_pred HHHHHHHHHHcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHhCccce
Confidence 99999999988765533 244455455544444444444454555555665555555555555554442 23333
Q ss_pred hhHHHHHHHHHHH
Q 008290 528 LSAVWWGLTLFMS 540 (571)
Q Consensus 528 i~Gv~~a~~i~~~ 540 (571)
-.|...|..+.-.
T Consensus 421 g~gff~a~fl~vl 433 (467)
T COG4267 421 GVGFFLASFLYVL 433 (467)
T ss_pred ehHHHHHHHHHHH
Confidence 3455555444433
No 44
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.012 Score=60.22 Aligned_cols=208 Identities=13% Similarity=0.078 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC
Q 008290 112 LDLIMLSLPAIAGQAIEPMAQLMETAYIGR---LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDS 188 (571)
Q Consensus 112 ~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~---lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~~~ 188 (571)
+++.++.....-..+.-.+.+=-|..++.. +.-.+.|.|.++.+.-.++.-+.--++--..-...+|...+++.+|
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~- 317 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQEN- 317 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhh-
Confidence 455566555566666666666666666663 4445677788887777777655555777777778888777665333
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhHHH
Q 008290 189 TSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPA 268 (571)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~ 268 (571)
.+++..++...+.+...+|++........+++++.+.+++.= ....+...+++++..+|+
T Consensus 318 ------------------~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kw--ss~~~~~lL~~YclYI~~ 377 (530)
T KOG2864|consen 318 ------------------VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKW--SSGGGSLLLSWYCLYIPF 377 (530)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccc--cCCCchHHHHHHHHHHHH
Confidence 778888999999999999988888888888899998887652 233455889999999999
Q ss_pred HHHHHHHHHHHhhcCCchhHH---HHHHHHHHHHHHHhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 008290 269 VVLSLAIQGIFRGFKDTRTPV---FCLGLGNFSAVFMFPMLMYYFKLGVTGAAISTVGSQYMVTLLMIWYLNKRTIL 342 (571)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~~ 342 (571)
.++|.+..+++.+....+..- .......+...+++++++-. +|..|..+|..+...+--+....++++..+.
T Consensus 378 lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~yr~ 452 (530)
T KOG2864|consen 378 LAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHYYRD 452 (530)
T ss_pred HHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999887655433 23345667777888888875 5669999999888888888887777665443
No 45
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=96.96 E-value=0.45 Score=46.99 Aligned_cols=155 Identities=15% Similarity=0.109 Sum_probs=105.0
Q ss_pred hcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh--C-hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCChh
Q 008290 350 LHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQ--G-ALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYN 426 (571)
Q Consensus 350 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~l--G-~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~vs~~~g~~~~~ 426 (571)
.+..+++++-.|..++.....+.-.+.+.-+++- . .+.+|+|+++..+.-++..+...+-.....++.+ +.+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~rs 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KRS 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hhh
Confidence 4667899999999999998888877777777653 2 4669999999999988888887777777766533 222
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHH-hhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChhHH
Q 008290 427 TVKEITHFALKTGLFTGVT-LAVILGASFNYLA-TLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLHYGVSDFSYA 504 (571)
Q Consensus 427 ~~~~~~~~~l~~~~~i~~~-~~~~l~~~~~~i~-~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 504 (571)
-++........+.+.... ..+..--+.+++. .++.-||++.+.+...+.++.+..+++++....+|++.=.+++...
T Consensus 83 -rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 83 -RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 122222222122221111 2222223344444 5567799999999999999999999999999999998855555444
Q ss_pred HHHHHH
Q 008290 505 AYSMMA 510 (571)
Q Consensus 505 ~~~~~~ 510 (571)
...++.
T Consensus 162 ~~aSI~ 167 (345)
T PF07260_consen 162 GSASIA 167 (345)
T ss_pred ehHHHH
Confidence 444443
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=88.67 E-value=31 Score=35.30 Aligned_cols=132 Identities=7% Similarity=0.021 Sum_probs=86.0
Q ss_pred HhHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 008290 403 MLADAQAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQ 482 (571)
Q Consensus 403 ~i~~~l~~a~~~~vs~~~g~~~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~ 482 (571)
.+..+++...+-.+|+.+=++|++++.....-.+.++...+.+.+...+ ...+++... .+ ...+...
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf--------~~~~~~si~---yk--~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF--------FVNNQYSIV---YK--ILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh--------hhcCchhHH---HH--HHHHHHH
Confidence 3456677788888888888888888887776666666555555543111 112223222 12 2223334
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 008290 483 PVTAVAYIFDGLHYGVSDFSYAAYSMMAVGAISSVFLLYAPRVFGLSAVWWGLTLFMSLRVAAGYF 548 (571)
Q Consensus 483 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~l~~i~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~ 548 (571)
+..+..-+....+.+++|.|...+...++-+..+.+-.++ .+.++.|..++..++..+...+...
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~-~~~~ie~lLL~~~IGi~~i~~l~~~ 206 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLF-LKSPIEGLLLTLDIGIFIILFLLNF 206 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhHHHHHHHHHH
Confidence 4556666777889999999988777777666666555443 6779999999999988765555433
No 47
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.37 E-value=2.3e+02 Score=28.38 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=38.8
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHhHH--------HHhhcCcchhHHHHHHHHHHHHHHHHHHHH
Q 008290 280 RGFKDTRTPVFCLGLGNFSAVFMFPM--------LMYYFKLGVTGAAISTVGSQYMVTLLMIWY 335 (571)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~l~~~--------li~~~~~Gi~Gaa~a~~~~~~~~~~~~~~~ 335 (571)
++.=+.+..+...+++++++....++ -+++.++|...+++.+.+...+..++....
T Consensus 245 ~GiLs~~eali~LliG~ils~~~~~lk~slP~~vsifG~k~Glk~~~vn~~v~i~~~i~~v~~L 308 (311)
T COG3366 245 SGILSEKEALIALLLGGILSLPIIYLKHSLPTYVSIFGRKLGLKIVAVNTAVSILARILIVLVL 308 (311)
T ss_pred cCCCCHHHHHHHHHHHhHHHhhHHHHHhhcccceeeeccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777777778888888754332 233447899999999988887776655443
No 48
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=53.76 E-value=72 Score=25.02 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHH
Q 008290 408 QAASGQALIASSFAKGDYNTVKEITHFALKTGLFTGV 444 (571)
Q Consensus 408 l~~a~~~~vs~~~g~~~~~~~~~~~~~~l~~~~~i~~ 444 (571)
++......+-+.+.+||++++++..+++..++.+-.+
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~ 72 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAII 72 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHH
Confidence 4444556677888899999999999998888754433
No 49
>PF14184 YrvL: Regulatory protein YrvL
Probab=41.64 E-value=2.3e+02 Score=24.48 Aligned_cols=105 Identities=17% Similarity=0.181 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCchhHHHHHHH
Q 008290 215 STALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGL 294 (571)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 294 (571)
...+...+.+.++.+. .+++..-+.+++|.+=| ...+...-.+....++.|+..+..++...+.-.+-++..... .
T Consensus 5 ~~~i~~~l~~~~v~a~-~ff~~~gif~L~Gi~Y~-S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~~--l 80 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAI-YFFVMVGIFHLLGIEYE-SVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFIL--L 80 (132)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHH--H
Confidence 3444445555555544 34555668889988755 245555556667777888888888877777666555544433 5
Q ss_pred HHHHHHHHhHHHHhhcCcchhHHHHHHHH
Q 008290 295 GNFSAVFMFPMLMYYFKLGVTGAAISTVG 323 (571)
Q Consensus 295 ~~~~~i~l~~~li~~~~~Gi~Gaa~a~~~ 323 (571)
...+....+|..++..+.=+.++.+++..
T Consensus 81 ~~~id~~~t~~~i~~aD~~m~sI~is~~~ 109 (132)
T PF14184_consen 81 AFIIDFLFTWITIYTADELMESISISTLS 109 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeCcHH
Confidence 66777777777777654445555554443
No 50
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=37.95 E-value=2.2e+02 Score=23.19 Aligned_cols=67 Identities=10% Similarity=0.111 Sum_probs=40.5
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 008290 206 TDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGAPAVVLSLAIQGIF 279 (571)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l 279 (571)
..+.+..+......+...++.+++++.-+ .-..++-..|+| .......|..-.++......++..+|
T Consensus 32 at~~v~sy~~~~~~l~yaI~aVvglIGai--~VY~k~~~Gd~d-----v~k~i~~w~GaciFli~~a~~l~afF 98 (98)
T PF13572_consen 32 ATDEVTSYFDPVTKLMYAIGAVVGLIGAI--RVYIKWNNGDQD-----VKKSIMSWFGACIFLIVAATVLPAFF 98 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccCCCc-----HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 46666777777777777777777665432 333445455544 34555666666666666666666543
No 51
>PF13347 MFS_2: MFS/sugar transport protein
Probab=37.64 E-value=4.9e+02 Score=27.09 Aligned_cols=25 Identities=4% Similarity=-0.086 Sum_probs=13.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHH
Q 008290 491 FDGLHYGVSDFSYAAYSMMAVGAIS 515 (571)
Q Consensus 491 ~~~~l~~~g~~~~~~~~~~~~~l~~ 515 (571)
...+.+=.|+.+......++..+..
T Consensus 280 ~~~l~~r~gk~~~~~~~~~~~~~~~ 304 (428)
T PF13347_consen 280 WGRLSKRFGKKKVYIIGLLLAALGF 304 (428)
T ss_pred HHHHHHHccceeehhhhHHHHHHHH
Confidence 3555556677776555555444433
No 52
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=27.57 E-value=5.3e+02 Score=24.39 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhhhch
Q 008290 111 QLDLIMLSLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGV 152 (571)
Q Consensus 111 ~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~-lg~~~~aa~~~ 152 (571)
.+.+.+...|...+.+...+..+.....+++ +|-++--..++
T Consensus 70 ~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl 112 (215)
T PF04172_consen 70 RRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSL 112 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 5678888999999999999999999999999 88765444433
No 53
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=25.62 E-value=8e+02 Score=25.79 Aligned_cols=79 Identities=8% Similarity=-0.084 Sum_probs=40.3
Q ss_pred hhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCChhHH
Q 008290 349 NLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQALIASSFAKGDYNTV 428 (571)
Q Consensus 349 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~lG~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~vs~~~g~~~~~~~ 428 (571)
..+.++.++.++|.++..+.. +..++.+...+.+.+++++..-+.--... +.+-+.++.
T Consensus 206 ~~~~~~~~~~~~~~l~~p~ii-----l~~i~~g~~t~teaa~~~~~~~l~i~~~~----------------~~~~~~~~l 264 (416)
T PF06808_consen 206 LKERWRAFKRAIPALLIPVII-----LGGIYLGIFTPTEAAAVAVVYALVIGLFV----------------YRRLSWKDL 264 (416)
T ss_pred HHHHHHHHHhcchHHHHHHHH-----HHHhhhcccchhhhhhhhHHHHHHHHHhh----------------hcccChhhh
Confidence 334445566666554433321 12233334456666666655443210000 455667777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008290 429 KEITHFALKTGLFTGVTLAV 448 (571)
Q Consensus 429 ~~~~~~~l~~~~~i~~~~~~ 448 (571)
.+....+.+.+..+...++.
T Consensus 265 ~~~l~~~~~~~~~i~~iia~ 284 (416)
T PF06808_consen 265 WRALVETARTTGMILFIIAA 284 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 77777777776655554443
No 54
>PTZ00370 STEVOR; Provisional
Probab=25.25 E-value=3.5e+02 Score=26.70 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhccCChhhhhhcC
Q 008290 541 LRVAAGYFRLLSKNGPWWFLQKHM 564 (571)
Q Consensus 541 i~~~~~~~~l~~~~~~w~~~~~~~ 564 (571)
+..+++.|++++|+..|+...+++
T Consensus 270 vliilYiwlyrrRK~swkhe~kkh 293 (296)
T PTZ00370 270 VLIILYIWLYRRRKNSWKHECKKH 293 (296)
T ss_pred HHHHHHHHHHHhhcchhHHHHHhh
Confidence 334445555666778998876654
No 55
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=23.46 E-value=8.4e+02 Score=25.27 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=30.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 008290 207 DRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDI 242 (571)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 242 (571)
+++.+++.+.+...+.+...+..++.....-|+...
T Consensus 90 e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~ 125 (386)
T PF05975_consen 90 ESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQ 125 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999998888777777777663
No 56
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=20.53 E-value=6e+02 Score=26.29 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCCCCCC
Q 008290 118 SLPAIAGQAIEPMAQLMETAYIGR-LGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSKDSTSDSSCPN 196 (571)
Q Consensus 118 ~~p~~~~~~~~~l~~~v~~~~l~~-lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~~~~~~~~~~~ 196 (571)
+.-.+.+++.+.+.+.+-+.+.-+ +|+.++| +++....++..+|.- .+.+.+++-.
T Consensus 60 g~iLIGNNLvNilasalaT~~~irl~Gd~Gva---IAt~~mT~vilvFaE--------VlPKt~Aa~~------------ 116 (423)
T COG4536 60 GTILIGNNLVNILASALATILGIRLYGDAGVA---IATGVLTFVILVFAE--------VLPKTIAALY------------ 116 (423)
T ss_pred eeeeecccHHHHHHHHHHHHHHHHHhccchHH---HHHHHHHHHHHHHHH--------hcchHHhhhC------------
Confidence 444555666666666664444444 7887644 444444444434332 2344555554
Q ss_pred CCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCC
Q 008290 197 VSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSA 248 (571)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (571)
.|++....+..+.....+.-++..++-.+..-+++++|...+
T Consensus 117 ----------perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~ 158 (423)
T COG4536 117 ----------PERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLD 158 (423)
T ss_pred ----------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 666666666666666777777777777888889999987765
No 57
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.03 E-value=1.6e+02 Score=25.06 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 008290 316 GAAISTVGSQYMVTLLMIWYLNKRT 340 (571)
Q Consensus 316 Gaa~a~~~~~~~~~~~~~~~~~~~~ 340 (571)
|..++..++-+...++..|+++|++
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333334444445444
No 58
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=20.00 E-value=5.5e+02 Score=21.84 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008290 427 TVKEITHFALKTGLFTGVTLAVILGASFNY 456 (571)
Q Consensus 427 ~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~ 456 (571)
..|+..+. ...+..++....++...+..+
T Consensus 3 ~~k~~i~~-~~iGi~ig~~i~li~~~~~~~ 31 (136)
T PF11457_consen 3 IIKKIIKG-FLIGIGIGSFISLIISLFYGQ 31 (136)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 34444443 334455555544444444443
Done!