Query 008290
Match_columns 571
No_of_seqs 307 out of 1888
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 22:42:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 2E-45 6.9E-50 392.0 37.4 419 107-551 7-444 (460)
2 3mkt_A Multi antimicrobial ext 99.8 1.3E-18 4.4E-23 184.7 21.3 280 35-340 141-447 (460)
3 1pw4_A Glycerol-3-phosphate tr 91.0 14 0.00048 37.1 29.0 25 524-548 408-432 (451)
4 2k1k_A Ephrin type-A receptor 23.1 97 0.0033 19.4 3.5 22 314-335 13-34 (38)
5 3o7q_A L-fucose-proton symport 16.5 7.1E+02 0.024 23.9 30.9 35 110-144 24-58 (438)
6 2jwa_A Receptor tyrosine-prote 13.8 2.9E+02 0.0098 18.0 4.3 11 330-340 29-39 (44)
7 2ks1_B Epidermal growth factor 12.8 3E+02 0.01 17.8 4.4 18 323-340 22-39 (44)
8 2l2t_A Receptor tyrosine-prote 12.3 3.2E+02 0.011 17.7 4.4 8 333-340 31-38 (44)
9 4hkr_A Calcium release-activat 12.3 7.4E+02 0.025 21.9 13.5 74 384-457 56-137 (214)
10 4aw6_A CAAX prenyl protease 1 8.8 1.4E+03 0.049 23.0 13.8 24 422-445 61-84 (482)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=2e-45 Score=391.96 Aligned_cols=419 Identities=19% Similarity=0.223 Sum_probs=384.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 008290 107 VQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVATSFVAEDISRSSSK 186 (571)
Q Consensus 107 ~~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~~~vs~~~g~~~~~ 186 (571)
.++..|++++.++|.++++++..+.+++|+.+++|+|++++|+++++.++..+... +..|++++..+.++|++|++|
T Consensus 7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~-~~~g~~~~~~~~is~~~g~~~-- 83 (460)
T 3mkt_A 7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSIL-FGVGLLMALVPVVAQLNGAGR-- 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHH-HHHHHHHHHGGGCTTTTSSSS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCC--
Confidence 34678999999999999999999999999999999999999999999999777664 456899999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchHHHHHHHHHHHhhH
Q 008290 187 DSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRIPAQRFLSLRAIGA 266 (571)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~ 266 (571)
+++.++.++.++.+.++++++.+++ ++++++++.+++.+++ ..+.+..|+++++++.
T Consensus 84 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~ 140 (460)
T 3mkt_A 84 --------------------QHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEA--MATKTVGYMHAVIFAV 140 (460)
T ss_dssp --------------------TTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTH--HHHHHHHHHTTGGGHH
T ss_pred --------------------hhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHH
Confidence 7888899999999999999998765 7788999999887776 8889999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhHHHHhh----cCcchhHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 008290 267 PAVVLSLAIQGIFRGFKDTRTPVFCLGLGNFSAVFMFPMLMYY----FKLGVTGAAISTVGSQYMVTLLMIWYLNKRTIL 342 (571)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~----~~~Gi~Gaa~a~~~~~~~~~~~~~~~~~~~~~~ 342 (571)
++..+....++++++.+|++.+++.++++.++|+++++++++. +++|+.|+++++.+++.+..++..++++|+++.
T Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~ 220 (460)
T 3mkt_A 141 PAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRL 220 (460)
T ss_dssp HHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 9999999999999999999999999999999999999999976 379999999999999999999988888765432
Q ss_pred cC-------CCcchhcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008290 343 SI-------PNMKNLHFGDYLRSGGYLLGRTLAAVMTITLSTSIAARQGALAMAAHQICLQVWLSVSMLADAQAASGQAL 415 (571)
Q Consensus 343 ~~-------~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ii~~lG~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~ 415 (571)
.+ .+.++..+|++++.++|.+++.+...+...+++.+++++|++++|+|+++.++.++..++..+++++..|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~ 300 (460)
T 3mkt_A 221 AHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIR 300 (460)
T ss_dssp CCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 13345567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008290 416 IASSFAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFNYLATLFTSDTQVLGIVRSGLLFVSASQPVTAVAYIFDGLH 495 (571)
Q Consensus 416 vs~~~g~~~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~i~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l 495 (571)
+++++|++|++++++..++++.++..++++.++++.++++++..+|++|+++.+.+.+++++++++.++++++.+..+++
T Consensus 301 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 380 (460)
T 3mkt_A 301 VGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSL 380 (460)
T ss_dssp HHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHH-HHHHHHHHHhccc-------cchhHHHHHHHHHHHHHHHHHHHHHH
Q 008290 496 YGVSDFSYAAYSMMAVG-AISSVFLLYAPRV-------FGLSAVWWGLTLFMSLRVAAGYFRLL 551 (571)
Q Consensus 496 ~~~g~~~~~~~~~~~~~-l~~i~~~~~l~~~-------~Gi~Gv~~a~~i~~~i~~~~~~~~l~ 551 (571)
++.||+|.+++.+.+.. +.++++.+++.+. +|+.|+|+++.+++++..++..++++
T Consensus 381 ~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~ 444 (460)
T 3mkt_A 381 RGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLY 444 (460)
T ss_dssp GGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877 7778887777666 99999999999999999888876663
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.80 E-value=1.3e-18 Score=184.67 Aligned_cols=280 Identities=13% Similarity=0.045 Sum_probs=228.1
Q ss_pred eecccCCCCCcccccccCCCCCcccccccccccccCCCccccCC-C---CcccccccCCCCcc-------------cccc
Q 008290 35 SMVIAPPNCSFGVINRAKNGFNPAIMCCGSVSDQHASDYITINP-S---GVGERLASDGGELS-------------NESR 97 (571)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~---~~~~~~~~~~~~~~-------------~~~~ 97 (571)
|+...+..+....|.+++++..+.....+...|. ..|+..+.. . +.+..+++.++.++ ++.+
T Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i-~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~ 219 (460)
T 3mkt_A 141 PAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNI-PLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKR 219 (460)
T ss_dssp HHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHH-HHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4445555566777778888887777777666666 556655543 2 34444433222211 1111
Q ss_pred ccc----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhchhHHHHHHHHHHhhhhhhhHHH
Q 008290 98 KSA----ATSQSCVQNVQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGPLELASAGVSTSIFNILSKVFNIPLLSVAT 173 (571)
Q Consensus 98 ~~~----~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~lg~~~~aa~~~~~~~~~~~~~~~~~gl~~~~~ 173 (571)
..+ ......+.+..|++++.++|.+++++...+...+|+.+++++|++++|+++++.++.++...+ ..+++++.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~-~~~~~~a~~ 298 (460)
T 3mkt_A 220 LAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMF-PMSIGAAVS 298 (460)
T ss_dssp CCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 111 111245667889999999999999999999999999999999999999999999999999855 458999999
Q ss_pred HHHHHHhhhccCCCCCCCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCccchH
Q 008290 174 SFVAEDISRSSSKDSTSDSSCPNVSYNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSGLFLDIMGISSASSMRI 253 (571)
Q Consensus 174 ~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 253 (571)
|.+++.+|++| +++.++..+.++.+...++++.+++++++++++..++..|++ +.+
T Consensus 299 p~i~~~~g~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~~ 354 (460)
T 3mkt_A 299 IRVGHKLGEQD----------------------TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQV--VVA 354 (460)
T ss_dssp HHHHHHHHSSC----------------------CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCST--THH
T ss_pred HHHHHHHcCCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHH
Confidence 99999999998 788888999999999999999999999999999999987665 889
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHH-HHHHHHhHHHHhh----cC-cchhHHHHHHHHHHHH
Q 008290 254 PAQRFLSLRAIGAPAVVLSLAIQGIFRGFKDTRTPVFCLGLGN-FSAVFMFPMLMYY----FK-LGVTGAAISTVGSQYM 327 (571)
Q Consensus 254 ~a~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l~~~li~~----~~-~Gi~Gaa~a~~~~~~~ 327 (571)
.+..+++++.++.++.+++.+..+++++.||++.+++..+++. ++++++++++... ++ +|+.|+|+++.+++.+
T Consensus 355 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~ 434 (460)
T 3mkt_A 355 LAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSA 434 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 9999999998876 66 9999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 008290 328 VTLLMIWYLNKRT 340 (571)
Q Consensus 328 ~~~~~~~~~~~~~ 340 (571)
..++..+.++|+.
T Consensus 435 ~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 435 AALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHSSSSSSC
T ss_pred HHHHHHHHHHHHH
Confidence 9888876665543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=91.00 E-value=14 Score=37.10 Aligned_cols=25 Identities=16% Similarity=-0.012 Sum_probs=14.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Q 008290 524 RVFGLSAVWWGLTLFMSLRVAAGYF 548 (571)
Q Consensus 524 ~~~Gi~Gv~~a~~i~~~i~~~~~~~ 548 (571)
...|....++...+..++..++..+
T Consensus 408 ~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 408 DFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 4567766666666555555544443
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=23.13 E-value=97 Score=19.45 Aligned_cols=22 Identities=0% Similarity=0.120 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 008290 314 VTGAAISTVGSQYMVTLLMIWY 335 (571)
Q Consensus 314 i~Gaa~a~~~~~~~~~~~~~~~ 335 (571)
+.|+.++.+++-.+...+.+++
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHHHH
Confidence 4455555555544444444333
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=16.47 E-value=7.1e+02 Score=23.88 Aligned_cols=35 Identities=3% Similarity=0.019 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 008290 110 VQLDLIMLSLPAIAGQAIEPMAQLMETAYIGRLGP 144 (571)
Q Consensus 110 ~~~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~lg~ 144 (571)
..+.+.....-.++..+...........+..++|.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 58 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL 58 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Confidence 34445555555555555545555444444444543
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=13.75 E-value=2.9e+02 Score=17.98 Aligned_cols=11 Identities=9% Similarity=0.301 Sum_probs=5.3
Q ss_pred HHHHHHHHhcC
Q 008290 330 LLMIWYLNKRT 340 (571)
Q Consensus 330 ~~~~~~~~~~~ 340 (571)
+...+|++|++
T Consensus 29 l~~~~~~RRR~ 39 (44)
T 2jwa_A 29 VVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHhheehhh
Confidence 33345555554
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=12.84 E-value=3e+02 Score=17.81 Aligned_cols=18 Identities=17% Similarity=0.181 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 008290 323 GSQYMVTLLMIWYLNKRT 340 (571)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~ 340 (571)
+.-.+..+..+++++|++
T Consensus 22 ~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 22 LLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhhhhH
Confidence 333333344445555443
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=12.29 E-value=3.2e+02 Score=17.74 Aligned_cols=8 Identities=13% Similarity=0.559 Sum_probs=3.4
Q ss_pred HHHHHhcC
Q 008290 333 IWYLNKRT 340 (571)
Q Consensus 333 ~~~~~~~~ 340 (571)
+++++|++
T Consensus 31 ~~~~RRRr 38 (44)
T 2l2t_A 31 AVYVRRKS 38 (44)
T ss_dssp HHHHHTTC
T ss_pred HHHhhhhh
Confidence 34444443
No 9
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=12.27 E-value=7.4e+02 Score=21.95 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------hhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008290 384 GALAMAAHQICLQVWLSVSMLADAQAASGQALIASS--------FAKGDYNTVKEITHFALKTGLFTGVTLAVILGASFN 455 (571)
Q Consensus 384 G~~~vaa~~i~~~i~~l~~~i~~~l~~a~~~~vs~~--------~g~~~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~ 455 (571)
.+.-+.+|+++..+.-.+.++..-+++-..|.+-.. ..+.-+++.+.+....-.++..+++++.++-....-
T Consensus 56 p~~LLi~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~ 135 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILC 135 (214)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345578888888887777777777776666655322 223456677777766666666666555554444444
Q ss_pred HH
Q 008290 456 YL 457 (571)
Q Consensus 456 ~i 457 (571)
|+
T Consensus 136 WV 137 (214)
T 4hkr_A 136 WV 137 (214)
T ss_dssp HH
T ss_pred eE
Confidence 44
No 10
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=8.75 E-value=1.4e+03 Score=23.02 Aligned_cols=24 Identities=4% Similarity=0.094 Sum_probs=12.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHH
Q 008290 422 KGDYNTVKEITHFALKTGLFTGVT 445 (571)
Q Consensus 422 ~~~~~~~~~~~~~~l~~~~~i~~~ 445 (571)
++++++.+++.+.-.+++++-.+.
T Consensus 61 ~e~f~ka~~Y~~~k~~f~~~~~~~ 84 (482)
T 4aw6_A 61 SETFEKSRLYQLDKSTFSFWSGLY 84 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666655555554444333
Done!