Query 008290
Match_columns 571
No_of_seqs 307 out of 1888
Neff 9.1
Searched_HMMs 13730
Date Mon Mar 25 22:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008290.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008290hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 68.3 44 0.0032 30.5 32.1 29 523-551 404-432 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 53.5 79 0.0058 28.6 17.4 26 311-336 406-431 (447)
3 d1lghb_ f.3.1.1 (B:) Light-har 7.0 1.5E+02 0.011 17.6 2.4 32 204-235 8-39 (43)
4 d2f69a1 b.76.2.1 (A:116-193) H 6.9 53 0.0039 22.2 0.3 20 5-24 8-27 (78)
5 d1nkzb_ f.3.1.1 (B:) Light-har 5.9 2.8E+02 0.02 16.0 3.4 33 424-456 7-39 (41)
6 d1jo5a_ f.3.1.1 (A:) Light-har 4.6 90 0.0066 19.1 0.3 39 199-237 8-46 (48)
7 d1xmec1 f.23.9.1 (C:2-34) Bact 4.5 2.6E+02 0.019 14.8 2.2 9 524-532 21-29 (33)
8 d1ijdb_ f.3.1.1 (B:) Light-har 2.7 5.5E+02 0.04 14.6 3.3 30 424-453 8-37 (40)
9 d1pv7a_ f.38.1.2 (A:) Lactose 2.4 1.3E+03 0.097 18.4 34.8 30 112-141 7-36 (417)
10 d2yvxa3 f.57.1.1 (A:276-448) M 2.4 1.2E+03 0.086 17.7 8.9 25 207-231 74-98 (173)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=68.26 E-value=44 Score=30.50 Aligned_cols=29 Identities=14% Similarity=0.011 Sum_probs=16.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008290 523 PRVFGLSAVWWGLTLFMSLRVAAGYFRLL 551 (571)
Q Consensus 523 ~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~ 551 (571)
...+|..+.++......++..++.+....
T Consensus 404 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 404 VDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777666666555555555544443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=53.49 E-value=79 Score=28.56 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=14.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHH
Q 008290 311 KLGVTGAAISTVGSQYMVTLLMIWYL 336 (571)
Q Consensus 311 ~~Gi~Gaa~a~~~~~~~~~~~~~~~~ 336 (571)
..|..+..+.......+..++.....
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666555555555555444444
No 3
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=6.95 E-value=1.5e+02 Score=17.63 Aligned_cols=32 Identities=6% Similarity=0.095 Sum_probs=20.8
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 008290 204 ESTDRKLLPSVSTALVLALTIGILEALAMYFG 235 (571)
Q Consensus 204 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (571)
+++.++.-+++.+++..-..++++.=++.+..
T Consensus 8 ~~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~w 39 (43)
T d1lghb_ 8 EEEAIAVHDQFKTTFSAFIILAAVAHVLVWVW 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666777788777777776665555544
No 4
>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.92 E-value=53 Score=22.23 Aligned_cols=20 Identities=15% Similarity=-0.019 Sum_probs=16.2
Q ss_pred cccCccccccccccccchhh
Q 008290 5 QFIGGRSCGITGTSFQRRAI 24 (571)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (571)
-||||.++|.+....|+-|-
T Consensus 8 ~pdGGslvG~vne~gEmtGd 27 (78)
T d2f69a1 8 YPDGGSLVGEVNEDGEMTGE 27 (78)
T ss_dssp CTTSCEEEECCCTTSCCCEE
T ss_pred eCCCCEEEeeecCCCccccc
Confidence 47999999999888886553
No 5
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=5.87 E-value=2.8e+02 Score=15.96 Aligned_cols=33 Identities=3% Similarity=-0.096 Sum_probs=23.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008290 424 DYNTVKEITHFALKTGLFTGVTLAVILGASFNY 456 (571)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~~~~ 456 (571)
+-++..|.+..+.+.-..++++.-++.+...+|
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPW 39 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCcc
Confidence 456777888888888888887777766666554
No 6
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.57 E-value=90 Score=19.14 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=23.5
Q ss_pred CCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 008290 199 YNGCDESTDRKLLPSVSTALVLALTIGILEALAMYFGSG 237 (571)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (571)
.-|=-+++.++.-+++..++..-..++++.=++.+...|
T Consensus 8 ~tGLT~~EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrP 46 (48)
T d1jo5a_ 8 YTGLTDEQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp TGGGHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444445666677777777777777666565555443
No 7
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=4.54 E-value=2.6e+02 Score=14.84 Aligned_cols=9 Identities=33% Similarity=0.449 Sum_probs=3.9
Q ss_pred cccchhHHH
Q 008290 524 RVFGLSAVW 532 (571)
Q Consensus 524 ~~~Gi~Gv~ 532 (571)
..+|+..+.
T Consensus 21 fw~gv~avf 29 (33)
T d1xmec1 21 FWLGVYAVF 29 (33)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334544443
No 8
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=2.71 E-value=5.5e+02 Score=14.57 Aligned_cols=30 Identities=3% Similarity=-0.137 Sum_probs=20.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008290 424 DYNTVKEITHFALKTGLFTGVTLAVILGAS 453 (571)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~i~~~~~~~l~~~ 453 (571)
+-++..|.+..+.+.-..++++.-++.+..
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~ 37 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhc
Confidence 456777777777777777777666555544
No 9
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=2.38 E-value=1.3e+03 Score=18.39 Aligned_cols=30 Identities=10% Similarity=-0.105 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008290 112 LDLIMLSLPAIAGQAIEPMAQLMETAYIGR 141 (571)
Q Consensus 112 ~~l~~~~~p~~~~~~~~~l~~~v~~~~l~~ 141 (571)
|+.+.+++-.++..+...+..-.-..++.+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~ 36 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHD 36 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777676666665554444444443
No 10
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=2.36 E-value=1.2e+03 Score=17.70 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=14.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH
Q 008290 207 DRKLLPSVSTALVLALTIGILEALA 231 (571)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (571)
.++..+.+.+=+..+++.++.++++
T Consensus 74 ~~~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 74 LRDWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666655544
Done!