BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008291
(571 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 232/481 (48%), Positives = 312/481 (64%), Gaps = 19/481 (3%)
Query: 101 AARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQ 160
A RDFG + P AV+ P DIA VK +LTVAARG+GHS+ GQA A
Sbjct: 50 AGRDFGGXNCVKPLAVVRPVGPEDIAGAVKAALR---SDKLTVAARGNGHSINGQAXAEG 106
Query: 161 GVVINMESLQGPKMQVY----AENSFYVDVSGGELWINILHESV-KYGLAPKSWTDYLHL 215
G+V++ + +V + + +VDVSGG LW ++L V +YGLAP+SWTDYL L
Sbjct: 107 GLVVDXSTTAENHFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLAPRSWTDYLGL 166
Query: 216 TVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFG 275
TVGGTLSNAG+SGQAF++GPQ SNV +L+VVTG G+++ CSE +NSELF SVLGGLGQFG
Sbjct: 167 TVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVLGGLGQFG 226
Query: 276 IITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLISA--EKTFDYIEGFVMVNRTGLL 333
IITRAR+ L+PAPD V+WIRV+Y++F F +D E+L+S E +FDY+EGFV VN +
Sbjct: 227 IITRARVLLQPAPDXVRWIRVVYTEFDEFTQDAEWLVSQKNESSFDYVEGFVFVNGADPV 286
Query: 334 NNWRS-SFDPQ---DPVQASQFKSDGQTLFCLELA-KYINKDEKDLVNQEVESSLSVLNY 388
N W + P DP + Q S G L+CLEL Y + D +++ VE + L +
Sbjct: 287 NGWPTVPLHPDHEFDPTRLPQ--SCGSVLYCLELGLHYRDSDSNSTIDKRVERLIGRLRF 344
Query: 389 IPSTLFLSEVSYIEFLDRVHVSEVKLRSKGLWEVPHPWLNLFIPQSKIHDFAREVFGNIL 448
F ++ Y++FL RV SE + G WE PHPWLNLF+ + I DF R VF ++
Sbjct: 345 NEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPHPWLNLFVSKRDIGDFNRTVFKELV 404
Query: 449 AETSNGPILIYPLNKSKWDNRTSVVIPEE-DVFYLVAFLSSAVPSSKGTDGLEHILTQNK 507
NGP L+YPL +S+WD+RTSVVIPEE ++FY+VA L P +K +E + QN+
Sbjct: 405 KNGVNGPXLVYPLLRSRWDDRTSVVIPEEGEIFYIVALLRFVPPCAK-VSSVEKXVAQNQ 463
Query: 508 RILEYCETARLGVKQYLPHYTTQEQWRSHFGPQWEVFVQRKSTYDPLAILAPGQRIFQKA 567
I+ +C + K YLPHY +QE+W HFG +W FV RK+ +DP AIL+PGQ+IF ++
Sbjct: 464 EIVHWCVKNGIDYKLYLPHYKSQEEWIRHFGNRWSRFVDRKAXFDPXAILSPGQKIFNRS 523
Query: 568 M 568
+
Sbjct: 524 L 524
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/508 (45%), Positives = 308/508 (60%), Gaps = 31/508 (6%)
Query: 81 PYSLKTLTLDGHLNFDEVHNAA--RDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSH 138
P SL L LDG L D AA DFGN LP+AVL+P+S +D+ +
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAA-NSTPG 75
Query: 139 SELTVAARGHGHSLQGQAQAHQGVVINMESLQG----PKMQVYAENSFYVDVSGGELWIN 194
T+A RG GHSL GQA A GVV+NM SL P++ V A+ YVD G ++WI+
Sbjct: 76 WPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGR-YVDAGGEQVWID 134
Query: 195 ILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIIN 254
+L S+ G+AP+SWTDYL+LTVGGTLSNAGISGQAF+HGPQISNV +++V+TG GE++
Sbjct: 135 VLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT 194
Query: 255 CSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLISA 314
CS++ N++LF +VLGGLGQFG+ITRARI++EPAP +W+R++Y+DFA F+ DQE L +
Sbjct: 195 CSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAP 254
Query: 315 EKT--------FDYIEGFVMVNR---TGLLNNWRSSFDPQDPVQASQFKSDGQTLFCLEL 363
Y+EG V VN+ T L N F D + + +
Sbjct: 255 RPGGGGASFGPMSYVEGSVFVNQSLATDLANT--GFFTDADVARIVALAGERNATTVYSI 312
Query: 364 AKYINKDE----KDLVNQEVESSLSVLNYIPSTLFLSEVSYIEFLDRVHVSEVKLRSKGL 419
+N D V+QE+ S L L+Y+ F +V+Y FLDRVH SEV L GL
Sbjct: 313 EATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGSEVALNKLGL 372
Query: 420 WEVPHPWLNLFIPQSKIHDFAREVFGNILAETS-NGPILIYPLNKSKWDNRTSVVIPEED 478
W VPHPWLN+F+P+S+I DF R VF IL T GP+++YPLNKS WD+ S P ED
Sbjct: 373 WRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSED 432
Query: 479 VFYLVAFLSSAVPSSKGTDGLEHILTQNKRILEYCETARLGVKQYLPHYTTQEQWRSHFG 538
VFY V+ L S+V + L + QN+RIL +C+ A + K YL +T + W HFG
Sbjct: 433 VFYAVSLLFSSVAPND----LARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFG 488
Query: 539 -PQWEVFVQRKSTYDPLAILAPGQRIFQ 565
+W FV+ K+ YDP +L+PGQ IF
Sbjct: 489 AAKWNRFVEMKNKYDPKRLLSPGQDIFN 516
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/508 (45%), Positives = 307/508 (60%), Gaps = 31/508 (6%)
Query: 81 PYSLKTLTLDGHLNFDEVHNAA--RDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSH 138
P SL L LDG L D AA DFGN LP+AVL+P+S +D+ +
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAA-NSTPG 75
Query: 139 SELTVAARGHGHSLQGQAQAHQGVVINMESLQG----PKMQVYAENSFYVDVSGGELWIN 194
T+A RG GHSL GQA A GVV+NM SL P++ V A+ YVD G ++WI+
Sbjct: 76 WPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGR-YVDAGGEQVWID 134
Query: 195 ILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIIN 254
+L S+ G+AP+SWTDYL+LTVGGTLSNAGISGQAF+HGPQISNV +++V+TG GE++
Sbjct: 135 VLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT 194
Query: 255 CSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLISA 314
CS++ N++LF +VLGGLGQFG+ITRARI++EPAP +W+R++Y+DFA F+ DQE L +
Sbjct: 195 CSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAP 254
Query: 315 EKT--------FDYIEGFVMVNR---TGLLNNWRSSFDPQDPVQASQFKSDGQTLFCLEL 363
Y+EG V VN+ T L N F D + + +
Sbjct: 255 RPGGGGASFGPMSYVEGSVFVNQSLATDLANT--GFFTDADVARIVALAGERNATTVYSI 312
Query: 364 AKYINKDE----KDLVNQEVESSLSVLNYIPSTLFLSEVSYIEFLDRVHVSEVKLRSKGL 419
+N D V+QE+ S L L+Y+ F +V+Y FLDRVH EV L GL
Sbjct: 313 EATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGL 372
Query: 420 WEVPHPWLNLFIPQSKIHDFAREVFGNILAETS-NGPILIYPLNKSKWDNRTSVVIPEED 478
W VPHPWLN+F+P+S+I DF R VF IL T GP+++YPLNKS WD+ S P ED
Sbjct: 373 WRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSED 432
Query: 479 VFYLVAFLSSAVPSSKGTDGLEHILTQNKRILEYCETARLGVKQYLPHYTTQEQWRSHFG 538
VFY V+ L S+V + L + QN+RIL +C+ A + K YL +T + W HFG
Sbjct: 433 VFYAVSLLFSSVAPND----LARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFG 488
Query: 539 -PQWEVFVQRKSTYDPLAILAPGQRIFQ 565
+W FV+ K+ YDP +L+PGQ IF
Sbjct: 489 AAKWNRFVEMKNKYDPKRLLSPGQDIFN 516
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 427 bits (1098), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/508 (45%), Positives = 305/508 (60%), Gaps = 31/508 (6%)
Query: 81 PYSLKTLTLDGHLNFDEVHNAA--RDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSH 138
P SL L LDG L D AA DFGN LP+AVL+P+S D+ +
Sbjct: 35 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAA-NSTPG 93
Query: 139 SELTVAARGHGHSLQGQAQAHQGVVINMESLQG----PKMQVYAENSFYVDVSGGELWIN 194
T+A RG GHSL GQA A GVV+NM SL P++ V A+ YVD G ++WI+
Sbjct: 94 WPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGR-YVDAGGEQVWID 152
Query: 195 ILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIIN 254
+L S+ G+AP+SWTDYL+LTVGGTLSNAGISGQAF+HGPQISNV +++V+TG GE++
Sbjct: 153 VLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT 212
Query: 255 CSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLISA 314
CS++ N++LF +VLGGLGQFG+ITRARI++EPAP +W+R +Y+DFA F+ DQE L +
Sbjct: 213 CSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLTAP 272
Query: 315 E--------KTFDYIEGFVMVNR---TGLLNNWRSSFDPQDPVQASQFKSDGQTLFCLEL 363
Y+EG V VN+ T L N F D + + +
Sbjct: 273 RPGGGGASFGPMSYVEGSVFVNQSLATDLANT--GFFTDADVARIVALAGERNATTVYSI 330
Query: 364 AKYINKDE----KDLVNQEVESSLSVLNYIPSTLFLSEVSYIEFLDRVHVSEVKLRSKGL 419
+N D V+QE+ S L L+Y+ F +V+Y FLDRVH EV L GL
Sbjct: 331 EATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGL 390
Query: 420 WEVPHPWLNLFIPQSKIHDFAREVFGNILAETS-NGPILIYPLNKSKWDNRTSVVIPEED 478
W VPHPWLN+F+P+S+I DF R VF IL T GP+++YPLNKS WD+ S P ED
Sbjct: 391 WRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSED 450
Query: 479 VFYLVAFLSSAVPSSKGTDGLEHILTQNKRILEYCETARLGVKQYLPHYTTQEQWRSHFG 538
VFY V+ L S+V + L + QN+RIL +C+ A + K YL +T + W HFG
Sbjct: 451 VFYAVSLLFSSVAPND----LARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFG 506
Query: 539 -PQWEVFVQRKSTYDPLAILAPGQRIFQ 565
+W FV+ K+ YDP +L+PGQ IF
Sbjct: 507 AAKWNRFVEMKNKYDPKRLLSPGQDIFN 534
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/508 (45%), Positives = 306/508 (60%), Gaps = 31/508 (6%)
Query: 81 PYSLKTLTLDGHLNFDEVHNAA--RDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSH 138
P SL L LDG L D AA DFGN LP+AVL+P+S +D+ +
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAA-NSTPG 75
Query: 139 SELTVAARGHGHSLQGQAQAHQGVVINMESLQG----PKMQVYAENSFYVDVSGGELWIN 194
T+A RG GHSL GQA A GVV+NM SL P++ V A+ YVD G ++WI+
Sbjct: 76 WPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGR-YVDAGGEQVWID 134
Query: 195 ILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIIN 254
+L S+ G+AP+SWTDYL+LTVGGTLSNAGISGQAF+HGPQISNV +++V+TG GE++
Sbjct: 135 VLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT 194
Query: 255 CSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLISA 314
CS++ N++LF +VLGGLGQFG+ITRARI++EPAP +W+R++Y+DFA F+ DQE L +
Sbjct: 195 CSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAP 254
Query: 315 E--------KTFDYIEGFVMVNR---TGLLNNWRSSFDPQDPVQASQFKSDGQTLFCLEL 363
Y+EG V VN+ T L N F D + + +
Sbjct: 255 RPGGGGASFGPMSYVEGSVFVNQSLATDLANT--GFFTDADVARIVALAGERNATTVYSI 312
Query: 364 AKYINKDE----KDLVNQEVESSLSVLNYIPSTLFLSEVSYIEFLDRVHVSEVKLRSKGL 419
+N D V+QE+ S L L+Y+ F +V+Y FLDRVH EV L GL
Sbjct: 313 EATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGL 372
Query: 420 WEVPHPWLNLFIPQSKIHDFAREVFGNILAETS-NGPILIYPLNKSKWDNRTSVVIPEED 478
W VPHPWLN+F+P+S+I DF R VF IL T GP+++YPLNKS WD+ S P ED
Sbjct: 373 WRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSED 432
Query: 479 VFYLVAFLSSAVPSSKGTDGLEHILTQNKRILEYCETARLGVKQYLPHYTTQEQWRSHFG 538
VFY V+ L S+V + L + QN+RIL +C+ A + K Y +T + W HFG
Sbjct: 433 VFYAVSLLFSSVAPND----LARLQEQNRRILRFCDLAGIQYKTYAARHTDRSDWVRHFG 488
Query: 539 -PQWEVFVQRKSTYDPLAILAPGQRIFQ 565
+W FV+ K+ YDP +L+PGQ IF
Sbjct: 489 AAKWNRFVEMKNKYDPKRLLSPGQDIFN 516
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 426 bits (1096), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/508 (45%), Positives = 307/508 (60%), Gaps = 31/508 (6%)
Query: 81 PYSLKTLTLDGHLNFDEVHNAA--RDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSH 138
P SL L LDG L D AA DFGN LP+AVL+P+S +D+ +
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAA-NSTPG 75
Query: 139 SELTVAARGHGHSLQGQAQAHQGVVINMESLQG----PKMQVYAENSFYVDVSGGELWIN 194
T+A RG GHSL GQA A GVV+NM SL P++ V A+ YVD G ++WI+
Sbjct: 76 WPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGR-YVDAGGEQVWID 134
Query: 195 ILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIIN 254
+L S+ G+AP+SWT+YL+LTVGGTLSNAGISGQAF+HGPQISNV +++V+TG GE++
Sbjct: 135 VLRASLARGVAPRSWTEYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT 194
Query: 255 CSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLISA 314
CS++ N++LF +VLGGLGQFG+ITRARI++EPAP +W+R++Y+DFA F+ DQE L +
Sbjct: 195 CSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAP 254
Query: 315 E--------KTFDYIEGFVMVNR---TGLLNNWRSSFDPQDPVQASQFKSDGQTLFCLEL 363
Y+EG V VN+ T L N F D + + +
Sbjct: 255 RPGGGGASFGPMSYVEGSVFVNQSLATDLANT--GFFTDADVARIVALAGERNATTVYSI 312
Query: 364 AKYINKDE----KDLVNQEVESSLSVLNYIPSTLFLSEVSYIEFLDRVHVSEVKLRSKGL 419
+N D V+QE+ S L L+Y+ F +V+Y FLDRVH EV L GL
Sbjct: 313 EATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGL 372
Query: 420 WEVPHPWLNLFIPQSKIHDFAREVFGNILAETS-NGPILIYPLNKSKWDNRTSVVIPEED 478
W VPHPWLN+F+P+S+I DF R VF IL T GP+++YPLNKS WD+ S P ED
Sbjct: 373 WRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSED 432
Query: 479 VFYLVAFLSSAVPSSKGTDGLEHILTQNKRILEYCETARLGVKQYLPHYTTQEQWRSHFG 538
VFY V+ L S+V + L + QN+RIL +C+ A + K YL +T + W HFG
Sbjct: 433 VFYAVSLLFSSVAPND----LARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFG 488
Query: 539 -PQWEVFVQRKSTYDPLAILAPGQRIFQ 565
+W FV+ K+ YDP +L+PGQ IF
Sbjct: 489 AAKWNRFVEMKNKYDPKRLLSPGQDIFN 516
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/508 (45%), Positives = 306/508 (60%), Gaps = 31/508 (6%)
Query: 81 PYSLKTLTLDGHLNFDEVHNAA--RDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSH 138
P SL L LDG L D AA DFGN LP+AVL+P+S +D+ +
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAA-NSTPG 75
Query: 139 SELTVAARGHGHSLQGQAQAHQGVVINMESLQG----PKMQVYAENSFYVDVSGGELWIN 194
T+A RG GHSL GQA A GVV+NM SL P++ V A+ YVD G ++WI+
Sbjct: 76 WPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGR-YVDAGGEQVWID 134
Query: 195 ILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIIN 254
+L S+ G+AP+SWTDYL+LTVGGTLSNAGISGQAF+HGPQISNV +++V+TG GE++
Sbjct: 135 VLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT 194
Query: 255 CSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLISA 314
CS++ N++LF +VLGGLGQFG+ITRARI++EPAP +W+R++Y+DFA F+ DQE L +
Sbjct: 195 CSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAP 254
Query: 315 EKT--------FDYIEGFVMVNR---TGLLNNWRSSFDPQDPVQASQFKSDGQTLFCLEL 363
Y+EG V VN+ T L N F D + + +
Sbjct: 255 RPGGGGASFGPMSYVEGSVFVNQSLATDLANT--GFFTDADVARIVALAGERNATTVYSI 312
Query: 364 AKYINKDE----KDLVNQEVESSLSVLNYIPSTLFLSEVSYIEFLDRVHVSEVKLRSKGL 419
+N D V+QE+ S L L+Y+ F +V+Y FLDRVH EV L GL
Sbjct: 313 EATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGL 372
Query: 420 WEVPHPWLNLFIPQSKIHDFAREVFGNILAETS-NGPILIYPLNKSKWDNRTSVVIPEED 478
W VPHPWLN+F+P+S+I DF R VF IL T G +++YPLNKS WD+ S P ED
Sbjct: 373 WRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGQLIVYPLNKSMWDDGMSAATPSED 432
Query: 479 VFYLVAFLSSAVPSSKGTDGLEHILTQNKRILEYCETARLGVKQYLPHYTTQEQWRSHFG 538
VFY V+ L S+V + L + QN+RIL +C+ A + K YL +T + W HFG
Sbjct: 433 VFYAVSLLFSSVAPND----LARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFG 488
Query: 539 -PQWEVFVQRKSTYDPLAILAPGQRIFQ 565
+W FV+ K+ YDP +L+PGQ IF
Sbjct: 489 AAKWNRFVEMKNKYDPKRLLSPGQDIFN 516
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 35/221 (15%)
Query: 94 NFDEVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQ 153
FD + N + R+ PS + S D+A +V++ + G L ++ R GH+
Sbjct: 23 GFDAIANI---WDGRHLQRPSLIARCLSAGDVAKSVRYACDNG----LEISVRSGGHNPN 75
Query: 154 GQAQAHQGVVINMESLQGPKMQVYAENSFYVD-------VSGGELWINILHESVKYGLAP 206
G A G+V+++ + NS ++D + GG + +++ E+ K+GLA
Sbjct: 76 GYATNDGGIVLDLRLM----------NSIHIDTAGSRARIGGGVISGDLVKEAAKFGLAA 125
Query: 207 KSWTDYLHLTVG--GTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELF 264
+ +H VG G N G+ ++G N+ +VT G++I CS+ + ELF
Sbjct: 126 VTG---MHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSDDERPELF 182
Query: 265 HSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFA 305
+V G FG++T + L P R + + F T+A
Sbjct: 183 WAVRGAGPNFGVVTEVEVQLYELP------RKMLAGFITWA 217
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 5/168 (2%)
Query: 121 SVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAEN 180
S SD V+ + V ARG G S AQ G+VI+M +L ++
Sbjct: 36 STSDPEVIVRAVTRAAEEGGRGVIARGLGRSYGDNAQNGGGLVIDMPALN--RIHSIDSG 93
Query: 181 SFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISN- 239
+ VDV G ++ ++ +GL +TVGG + I G+ N
Sbjct: 94 TRLVDVDAGVSLDQLMKAALPHGLWVPVLPGTRQVTVGGAI-GCDIHGKNHHSAGSFGNH 152
Query: 240 VHQLEVVTGKGEIINCSEK-QNSELFHSVLGGLGQFGIITRARISLEP 286
V +E++T GE+ + + +S+LF + +GG G GII RA I + P
Sbjct: 153 VRSMELLTANGEVRHLTPAGPDSDLFWATVGGNGLTGIILRATIEMTP 200
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Hexagonal Crystal Form
pdb|4FDO|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct319
pdb|4FDP|A Chain A, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FDP|B Chain B, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FEH|A Chain A, Mycobacterium Tuberculosis Dpre1 - Hexagonal Crystal Form
pdb|4FF6|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
pdb|4FF6|B Chain B, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
Length = 481
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Query: 149 GHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKS 208
G S AQ G+VI+M L + ++ VD+ G ++ ++ +GL
Sbjct: 77 GRSYGDNAQNGGGLVIDMTPLN--TIHSIDADTKLVDIDAGVNLDQLMKAALPFGLWVPV 134
Query: 209 WTDYLHLTVGGTLSNAGISGQAFQHGPQISN-VHQLEVVTGKGEIINCSEK-QNSELFHS 266
+TVGG ++ I G+ N V ++++T GEI + + +++ELF +
Sbjct: 135 LPGTRQVTVGGAIA-CDIHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPTGEDAELFWA 193
Query: 267 VLGGLGQFGIITRARISLEP 286
+GG G GII RA I + P
Sbjct: 194 TVGGNGLTGIIMRATIEMTP 213
>pdb|2VFR|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2): Native
Enzyme
pdb|2VFS|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Xylitol
pdb|2VFT|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Sorbitol
pdb|2VFU|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Mannitol
pdb|2VFV|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Sulphite
Length = 422
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 6/145 (4%)
Query: 147 GHGHSLQGQAQ-AHQGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLA 205
G GHS A+ GV++++ L P + + V V GG + + GLA
Sbjct: 47 GSGHSFNEIAEPGDGGVLLSLAGL--PSVVDVDTAARTVRVGGGVRYAELARVVHARGLA 104
Query: 206 PKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFH 265
+ H++V G+++ G G +G S V ++E+VT G + + + E F
Sbjct: 105 LPNMASLPHISVAGSVAT-GTHGSGVGNGSLASVVREVELVTADGSTVVIA--RGDERFG 161
Query: 266 SVLGGLGQFGIITRARISLEPAPDM 290
+ LG G++T + LEPA +M
Sbjct: 162 GAVTSLGALGVVTSLTLDLEPAYEM 186
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 155 QAQAHQGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLH 214
AQ G+VI+M +L ++ + VDV G ++ ++ +GL
Sbjct: 5 NAQNGGGLVIDMPALN--RIHSIDSGTRLVDVDAGVSLDQLMKAALPHGLWVPVLPGTRQ 62
Query: 215 LTVGGTLSNAGISGQAFQHGPQISN-VHQLEVVTGKGEIINCSEK-QNSELFHSVLGGLG 272
+TVGG + I G+ N V +E++T GE+ + + +S+LF + +GG G
Sbjct: 63 VTVGGAIG-CDIHGKNHHSAGSFGNHVRSMELLTANGEVRHLTPAGPDSDLFWATVGGNG 121
Query: 273 QFGIITRARISLEP 286
GII RA I + P
Sbjct: 122 LTGIILRATIEMTP 135
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 13/193 (6%)
Query: 107 NRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG-VVIN 165
N Y+ VL P S ++ I ++ + + + + +G L G H G VVI+
Sbjct: 46 NLYRGHSPLVLRPGSTEEVVA----ICKLANEARVALVPQGGNTGLVGGQTPHNGEVVIS 101
Query: 166 MESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYG-LAPKSWTDYLHLTVGGTLSNA 224
++ K++ +S + V G + + ++ + L P S T+GG LS
Sbjct: 102 LKRXD--KIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTN 159
Query: 225 GISGQAFQHGPQISNVHQLEVVTGKGEIINCS---EKQNS--ELFHSVLGGLGQFGIITR 279
A +G +EVV G + N +K N+ +L +G G GIIT
Sbjct: 160 AGGTAALAYGLARDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEGTLGIITA 219
Query: 280 ARISLEPAPDMVK 292
A + L P P V+
Sbjct: 220 ATLKLFPKPRAVE 232
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 12/201 (5%)
Query: 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQA---HQGVVIN 165
++ +P VL P D+ V + L + G G S+ +I+
Sbjct: 202 FERIPDIVLWPTCHDDVVKIVN----LACKYNLCIIPIGGGTSVSYGLMCPADETRTIIS 257
Query: 166 MESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHL-TVGGTLSNA 224
+++ Q ++ EN+ V G + + + G D L TVGG +S
Sbjct: 258 LDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTR 317
Query: 225 GISGQAFQHGPQISNVHQLEVVTGKGEI-INCSEKQNS---ELFHSVLGGLGQFGIITRA 280
+ +G V ++VVT +G I +C + S ++ H ++G G G+IT A
Sbjct: 318 ASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEA 377
Query: 281 RISLEPAPDMVKWIRVLYSDF 301
I + P P+ K+ V + +F
Sbjct: 378 TIKIRPTPEYQKYGSVAFPNF 398
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 12/201 (5%)
Query: 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQA---HQGVVIN 165
++ +P VL P D+ V + L + G G S+ +I+
Sbjct: 202 FERIPDIVLWPTCHDDVVKIVN----LACKYNLCIIPIGGGTSVSYGLMCPADETRTIIS 257
Query: 166 MESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHL-TVGGTLSNA 224
+++ Q ++ EN+ V G + + + G D L TVGG +S
Sbjct: 258 LDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTR 317
Query: 225 GISGQAFQHGPQISNVHQLEVVTGKGEI-INCSEKQNS---ELFHSVLGGLGQFGIITRA 280
+ +G V ++VVT +G I +C + S ++ H ++G G G+IT A
Sbjct: 318 ASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEA 377
Query: 281 RISLEPAPDMVKWIRVLYSDF 301
I + P P+ K+ V + +F
Sbjct: 378 TIKIRPTPEYQKYGSVAFPNF 398
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 12/201 (5%)
Query: 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQA---HQGVVIN 165
++ +P VL P D+ V + L + G G S+ +I+
Sbjct: 202 FERIPDIVLWPTCHDDVVKIVN----LACKYNLCIIPIGGGTSVSYGLMCPADETRTIIS 257
Query: 166 MESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHL-TVGGTLSNA 224
+++ Q ++ EN+ V G + + + G D L TVGG +S
Sbjct: 258 LDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTR 317
Query: 225 GISGQAFQHGPQISNVHQLEVVTGKGEI-INCSEKQNS---ELFHSVLGGLGQFGIITRA 280
+ +G V ++VVT +G I +C + S ++ H ++G G G+IT A
Sbjct: 318 ASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEA 377
Query: 281 RISLEPAPDMVKWIRVLYSDF 301
I + P P+ K+ V + +F
Sbjct: 378 TIKIRPTPEYQKYGSVAFPNF 398
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 219 GTLSNAGISGQAFQHGPQ--ISNVHQLEVVT--------GKGEIINCSEKQNSELFHSVL 268
GT GISG F HG S++H L V + G I+ S +N++LF +
Sbjct: 130 GTCPGVGISGH-FAHGGFGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIK 188
Query: 269 GGLGQFGIITRARISLEPAPDMV 291
G FGI+ +++ PAP ++
Sbjct: 189 GAGSNFGIVAVWKLATFPAPKVL 211
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 233 HGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVK 292
HG + + VV I++ SE +N++LF ++ GG G F I++ + AP+++
Sbjct: 157 HGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAPEIIT 216
Query: 293 WIRV 296
+V
Sbjct: 217 TYQV 220
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 233 HGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVK 292
HG + + VV I++ SE +N++LF ++ GG G F I++ + AP+++
Sbjct: 157 HGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAPEIIT 216
Query: 293 WIRV 296
+V
Sbjct: 217 TYQV 220
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG--VVINMESLQ 170
PSA++ P S +++ T++ I T+ R GHS +G + ++I++ +L
Sbjct: 46 PSAIILPGSKEELSNTIRCI----RKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLN 101
Query: 171 GPKMQVYAENSFYVDVSG-GELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQ 229
+ + +E ++ S GEL+ I S K G W + + G+ +
Sbjct: 102 RVSIDLESETAWVESGSTLGELYYAITESSSKLGFTA-GWAPTVGTGGHISGGGFGMMSR 160
Query: 230 AFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQ-FGIITRARISLEPAP 288
++G NV ++ G I++ + ++F ++ GG G +G I +I L P P
Sbjct: 161 --KYGLAADNVVDAILIDANGAILD-RQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVP 217
Query: 289 DMVKWIRV 296
+ V RV
Sbjct: 218 EKVTVFRV 225
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG--VVINMESLQ 170
PSA++ P S +++ T++ I T+ R GHS +G + ++I++ +L
Sbjct: 46 PSAIILPGSKEELSNTIRCI----RKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLN 101
Query: 171 GPKMQVYAENSFYVDVSG-GELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQ 229
+ + +E ++ S GEL+ I S K G W + + G+ +
Sbjct: 102 RVSIDLESETAWVESGSTLGELYYAITESSSKLGFTA-GWAPTVGTGGHISGGGFGMMSR 160
Query: 230 AFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQ-FGIITRARISLEPAP 288
++G NV ++ G I++ + ++F ++ GG G +G I +I L P P
Sbjct: 161 --KYGLAADNVVDAILIDANGAILD-RQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVP 217
Query: 289 DMVKWIRV 296
+ V RV
Sbjct: 218 EKVTVFRV 225
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG--VVINMESLQ 170
PSA++ P S +++ T++ I T+ R GHS +G + ++I++ +L
Sbjct: 71 PSAIILPGSKEELSNTIRCI----RKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLN 126
Query: 171 GPKMQVYAENSFYVDVSG-GELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQ 229
+ + +E ++ S GEL+ I S K G W + + G+ +
Sbjct: 127 RVSIDLESETAWVESGSTLGELYYAITESSSKLGFTA-GWCPTVGTGGHISGGGFGMMSR 185
Query: 230 AFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQ-FGIITRARISLEPAP 288
++G NV ++ G I++ + ++F ++ GG G +G I +I L P P
Sbjct: 186 --KYGLAADNVVDAILIDANGAILD-RQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVP 242
Query: 289 DMVKWIRV 296
+ V RV
Sbjct: 243 EKVTVFRV 250
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG--VVINMESLQ 170
PSA++ P S +++ T++ I T+ R GHS +G + ++I++ +L
Sbjct: 46 PSAIILPGSKEELSNTIRCI----RKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLN 101
Query: 171 GPKMQVYAENSFYVDVSG-GELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQ 229
+ + +E ++ S GEL+ I S K G W + + G+ +
Sbjct: 102 RVSIDLESETAWVESGSTLGELYYAITESSSKLGFTA-GWCPTVGTGGHISGGGFGMMSR 160
Query: 230 AFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQ-FGIITRARISLEPAP 288
++G NV ++ G I++ + ++F ++ GG G +G I +I L P P
Sbjct: 161 --KYGLAADNVVDAILIDANGAILD-RQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVP 217
Query: 289 DMVKWIRV 296
+ V RV
Sbjct: 218 EKVTVFRV 225
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG--VVINMESLQ 170
PSA++ P S +++ T++ I T+ R GHS +G + ++I++ +L
Sbjct: 52 PSAIILPGSKEELSNTIRCI----RKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLN 107
Query: 171 GPKMQVYAENSFYVDVSG-GELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQ 229
+ + +E ++ S GEL+ I S K G W + + G+ +
Sbjct: 108 RVSIDLESETAWVESGSTLGELYYAITESSSKLGFTA-GWCPTVGTGGAISGGGFGMMSR 166
Query: 230 AFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQ-FGIITRARISLEPAP 288
++G NV ++ G I++ + ++F ++ GG G +G I +I L P P
Sbjct: 167 --KYGLAADNVVDAILIDANGAILD-RQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVP 223
Query: 289 DMVKWIRV 296
+ V RV
Sbjct: 224 EKVTVFRV 231
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG--VVINMESLQ 170
PSA++ P S +++ T++ I T+ R GHS +G + ++I++ +L
Sbjct: 52 PSAIILPGSKEELSNTIRCI----RKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLN 107
Query: 171 GPKMQVYAENSFYVDVSG-GELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQ 229
+ + +E ++ S GEL+ I S K G W + + G+ +
Sbjct: 108 RVSIDLESETAWVESGSTLGELYYAITESSSKLGFTA-GWCPTVGTGGHISGGGFGMMSR 166
Query: 230 AFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQ-FGIITRARISLEPAP 288
++G NV ++ G I++ + ++F ++ GG G +G I +I L P P
Sbjct: 167 --KYGLAADNVVDAILIDANGAILD-RQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVP 223
Query: 289 DMVKWIRV 296
+ V RV
Sbjct: 224 EKVTVFRV 231
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Query: 184 VDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQL 243
V + G EL + + V G P S + T+GG L+ Q+ ++G
Sbjct: 211 VGIMGPELEKQLHKQGVSLGHDPDS---FEFSTLGGWLATCSSGHQSDKYGDIEDMAVSF 267
Query: 244 EVVTGKG--EIINCSEKQNSELF-HSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSD 300
VT G E+ N + + H +LG G GIIT A + + P V++ L+
Sbjct: 268 RTVTPTGTLELRNGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPT 327
Query: 301 FA 302
FA
Sbjct: 328 FA 329
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 16/186 (8%)
Query: 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG----VVINMES 168
P ++ P + S I V G + + R GH +G + + V++M
Sbjct: 55 PLYIITPTNASHIQAAV----VCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNK 110
Query: 169 LQGPKMQVYAENSFYVDVSG--GELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGI 226
++ + A + +VD G+L+ I S K G T +
Sbjct: 111 MRAVSIDGKAATA-WVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGML 169
Query: 227 SGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQ-FGIITRARISLE 285
++G NV +VV +G +++ + + F ++ GG G+ FGI+ ++ L
Sbjct: 170 ---LRKYGTAADNVIDAKVVDAQGRLLD-RKAMGEDHFWAIRGGGGESFGIVASWQVKLL 225
Query: 286 PAPDMV 291
P P V
Sbjct: 226 PVPPKV 231
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 12/188 (6%)
Query: 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG--VVINMESLQ 170
PSA++ P S +++ T++ I T+ R G S +G + ++I++ +L
Sbjct: 49 PSAIILPGSKEELSNTIRCI----RKGSWTIRLRSGGASYEGLSYTSDTPFILIDLMNLN 104
Query: 171 GPKMQVYAENSFYVDVSG-GELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQ 229
+ + +E ++ S GEL+ I S K G W + + G+ +
Sbjct: 105 RVSIDLESETAWVESGSTLGELYYAITESSSKLGFTA-GWCPTVGTGGHISGGGFGMMSR 163
Query: 230 AFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQ-FGIITRARISLEPAP 288
++G NV ++ G I++ + ++F ++ GG G +G I +I L P P
Sbjct: 164 --KYGLAADNVVDAILIDANGAILD-RQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVP 220
Query: 289 DMVKWIRV 296
+ V RV
Sbjct: 221 EKVTVFRV 228
>pdb|3R0I|A Chain A, Ispc In Complex With An N-Methyl-Substituted Hydroxamic
Acid
pdb|3R0I|B Chain B, Ispc In Complex With An N-Methyl-Substituted Hydroxamic
Acid
Length = 410
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 406 RVHVSEVKLRSKGLWEVPHPWL---------NLFIPQSKIHDFAREVFGNILAETSNGPI 456
++ V + +KGL + WL L PQS IH R G++LA+ P
Sbjct: 229 KISVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGE-PD 287
Query: 457 LIYPLNKS-KWDNRTSVVIPEEDVFYLVAFLSSAVP 491
+ P+ + W NR + + D F ++ L+ A P
Sbjct: 288 MRTPIAHTMAWPNRVNSGVKPLD-FCKLSALTFAAP 322
>pdb|3ANL|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
Pyridin-2-Ylmethylphosphonic Acid
pdb|3ANL|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
Pyridin-2-Ylmethylphosphonic Acid
pdb|3ANM|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
5-Phenylpyridin-2-Ylmethylphosphonic Acid
pdb|3ANM|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
5-Phenylpyridin-2-Ylmethylphosphonic Acid
pdb|3ANN|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
Quinolin-2-Ylmethylphosphonic Acid
pdb|3ANN|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
Quinolin-2-Ylmethylphosphonic Acid
Length = 420
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 406 RVHVSEVKLRSKGLWEVPHPWL---------NLFIPQSKIHDFAREVFGNILAETSNGPI 456
++ V + +KGL + WL L PQS IH R G++LA+ P
Sbjct: 227 KISVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGE-PD 285
Query: 457 LIYPLNKS-KWDNRTSVVIPEEDVFYLVAFLSSAVP 491
+ P+ + W NR + + D F ++ L+ A P
Sbjct: 286 MRTPIAHTMAWPNRVNSGVKPLD-FCKLSALTFAAP 320
>pdb|2EGH|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase Complexed With A Magnesium Ion, Nadph
And Fosmidomycin
pdb|2EGH|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase Complexed With A Magnesium Ion, Nadph
And Fosmidomycin
Length = 424
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 406 RVHVSEVKLRSKGLWEVPHPWL---------NLFIPQSKIHDFAREVFGNILAETSNGPI 456
++ V + +KGL + WL L PQS IH R G++LA+ P
Sbjct: 227 KISVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGE-PD 285
Query: 457 LIYPLNKS-KWDNRTSVVIPEEDVFYLVAFLSSAVP 491
+ P+ + W NR + + D F ++ L+ A P
Sbjct: 286 MRTPIAHTMAWPNRVNSGVKPLD-FCKLSALTFAAP 320
>pdb|1T1R|A Chain A, Crystal Structure Of The Reductoisomerase Complexed With A
Bisphosphonate
pdb|1T1R|B Chain B, Crystal Structure Of The Reductoisomerase Complexed With A
Bisphosphonate
pdb|1T1S|A Chain A, Crystal Structure Of The Reductoisomerase Complexed With A
Bisphosphonate
pdb|1T1S|B Chain B, Crystal Structure Of The Reductoisomerase Complexed With A
Bisphosphonate
Length = 398
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 406 RVHVSEVKLRSKGLWEVPHPWL---------NLFIPQSKIHDFAREVFGNILAETSNGPI 456
++ V + +KGL + WL L PQS IH R G++LA+ P
Sbjct: 217 KISVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGE-PD 275
Query: 457 LIYPLNKS-KWDNRTSVVIPEEDVFYLVAFLSSAVP 491
+ P+ + W NR + + D F ++ L+ A P
Sbjct: 276 MRTPIAHTMAWPNRVNSGVKPLD-FCKLSALTFAAP 310
>pdb|1Q0L|A Chain A, Crystal Structure Of Dxr In Complex With Fosmidomycin
pdb|1Q0Q|A Chain A, Crystal Structure Of Dxr In Complex With The Substrate 1-
Deoxy-D-Xylulose-5-Phosphate
pdb|1Q0Q|B Chain B, Crystal Structure Of Dxr In Complex With The Substrate 1-
Deoxy-D-Xylulose-5-Phosphate
Length = 406
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 406 RVHVSEVKLRSKGLWEVPHPWL---------NLFIPQSKIHDFAREVFGNILAETSNGPI 456
++ V + +KGL + WL L PQS IH R G++LA+ P
Sbjct: 225 KISVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGE-PD 283
Query: 457 LIYPLNKS-KWDNRTSVVIPEEDVFYLVAFLSSAVP 491
+ P+ + W NR + + D F ++ L+ A P
Sbjct: 284 MRTPIAHTMAWPNRVNSGVKPLD-FCKLSALTFAAP 318
>pdb|1K5H|A Chain A, 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
pdb|1K5H|B Chain B, 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
pdb|1K5H|C Chain C, 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
pdb|1ONN|A Chain A, Ispc Apo Structure
pdb|1ONN|B Chain B, Ispc Apo Structure
pdb|1ONO|A Chain A, Ispc Mn2+ Complex
pdb|1ONO|B Chain B, Ispc Mn2+ Complex
pdb|1ONP|A Chain A, Ispc Complex With Mn2+ And Fosmidomycin
pdb|1ONP|B Chain B, Ispc Complex With Mn2+ And Fosmidomycin
Length = 398
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 406 RVHVSEVKLRSKGLWEVPHPWL---------NLFIPQSKIHDFAREVFGNILAETSNGPI 456
++ V + +KGL + WL L PQS IH R G++LA+ P
Sbjct: 217 KISVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGE-PD 275
Query: 457 LIYPLNKS-KWDNRTSVVIPEEDVFYLVAFLSSAVP 491
+ P+ + W NR + + D F ++ L+ A P
Sbjct: 276 MRTPIAHTMAWPNRVNSGVKPLD-FCKLSALTFAAP 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,573,344
Number of Sequences: 62578
Number of extensions: 731531
Number of successful extensions: 1757
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1691
Number of HSP's gapped (non-prelim): 43
length of query: 571
length of database: 14,973,337
effective HSP length: 104
effective length of query: 467
effective length of database: 8,465,225
effective search space: 3953260075
effective search space used: 3953260075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)