Query 008291
Match_columns 571
No_of_seqs 332 out of 2783
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 21:57:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 2.3E-96 5E-101 792.1 52.2 513 53-571 3-525 (525)
2 KOG1231 Proteins containing th 100.0 4.4E-90 9.5E-95 699.5 33.0 487 59-570 6-504 (505)
3 PF09265 Cytokin-bind: Cytokin 100.0 1.3E-54 2.9E-59 430.1 19.7 276 288-564 1-281 (281)
4 PLN02805 D-lactate dehydrogena 100.0 1.8E-52 4E-57 458.0 21.6 411 89-565 106-550 (555)
5 PRK11230 glycolate oxidase sub 100.0 4.8E-52 1E-56 452.4 22.7 428 83-563 24-472 (499)
6 TIGR00387 glcD glycolate oxida 100.0 1.6E-46 3.4E-51 402.6 22.3 396 116-561 1-413 (413)
7 COG0277 GlcD FAD/FMN-containin 100.0 2.5E-42 5.3E-47 376.1 36.7 425 93-563 11-456 (459)
8 KOG1232 Proteins containing th 100.0 1.3E-41 2.9E-46 337.9 12.0 417 83-563 58-511 (511)
9 TIGR01679 bact_FAD_ox FAD-link 100.0 8.6E-39 1.9E-43 342.5 34.5 401 103-560 2-412 (419)
10 TIGR01678 FAD_lactone_ox sugar 100.0 5.8E-38 1.3E-42 336.5 37.1 410 102-559 4-437 (438)
11 TIGR01676 GLDHase galactonolac 100.0 2E-37 4.4E-42 334.3 40.1 204 101-314 50-253 (541)
12 TIGR01677 pln_FAD_oxido plant- 100.0 1.5E-37 3.2E-42 339.9 36.4 208 98-313 17-235 (557)
13 PLN02465 L-galactono-1,4-lacto 100.0 7.9E-34 1.7E-38 308.9 41.2 205 99-313 83-287 (573)
14 PRK11282 glcE glycolate oxidas 100.0 8.6E-36 1.9E-40 309.3 24.6 183 121-312 3-193 (352)
15 PRK11183 D-lactate dehydrogena 100.0 1.7E-32 3.6E-37 291.6 19.5 235 82-326 7-308 (564)
16 KOG1233 Alkyl-dihydroxyacetone 100.0 7.3E-29 1.6E-33 247.4 25.7 420 105-562 153-612 (613)
17 KOG4730 D-arabinono-1, 4-lacto 100.0 3.7E-26 8E-31 233.5 31.9 209 109-329 46-255 (518)
18 PF01565 FAD_binding_4: FAD bi 99.9 1E-26 2.2E-31 212.3 12.0 138 113-256 1-139 (139)
19 KOG1262 FAD-binding protein DI 99.9 5.2E-25 1.1E-29 220.4 11.7 412 117-548 58-510 (543)
20 PRK13905 murB UDP-N-acetylenol 99.9 5.4E-24 1.2E-28 218.4 14.5 180 88-288 8-193 (298)
21 PRK12436 UDP-N-acetylenolpyruv 99.9 9E-22 1.9E-26 201.8 13.2 175 93-287 19-197 (305)
22 PRK14652 UDP-N-acetylenolpyruv 99.9 2.3E-21 4.9E-26 198.4 14.6 181 88-288 13-196 (302)
23 PRK13906 murB UDP-N-acetylenol 99.8 6.9E-21 1.5E-25 195.3 13.8 176 92-287 18-197 (307)
24 TIGR00179 murB UDP-N-acetyleno 99.8 1.2E-19 2.7E-24 184.5 13.8 158 109-287 9-175 (284)
25 PRK13903 murB UDP-N-acetylenol 99.8 4.9E-19 1.1E-23 184.4 15.0 177 93-288 15-197 (363)
26 PRK14649 UDP-N-acetylenolpyruv 99.8 4.6E-18 1E-22 173.6 13.5 166 109-288 17-193 (295)
27 PRK14653 UDP-N-acetylenolpyruv 99.7 8.5E-17 1.8E-21 163.8 13.7 155 109-288 30-194 (297)
28 PRK14650 UDP-N-acetylenolpyruv 99.6 1.2E-15 2.6E-20 155.0 12.8 164 109-289 29-196 (302)
29 PRK00046 murB UDP-N-acetylenol 99.6 1.4E-15 2.9E-20 156.8 12.4 163 109-287 17-188 (334)
30 COG0812 MurB UDP-N-acetylmuram 99.6 2.3E-15 5E-20 150.5 13.5 160 109-287 17-183 (291)
31 PRK14648 UDP-N-acetylenolpyruv 99.6 1.1E-14 2.4E-19 149.9 12.8 167 109-288 26-237 (354)
32 PRK14651 UDP-N-acetylenolpyruv 99.3 6.2E-12 1.3E-16 126.2 11.7 151 109-287 17-170 (273)
33 PF02913 FAD-oxidase_C: FAD li 99.2 2.3E-13 4.9E-18 135.4 -5.1 219 287-561 1-247 (248)
34 PRK13904 murB UDP-N-acetylenol 99.1 5.8E-10 1.3E-14 111.0 9.6 146 109-289 15-161 (257)
35 PF08031 BBE: Berberine and be 98.4 2.5E-07 5.5E-12 67.7 2.7 41 523-563 2-46 (47)
36 PF04030 ALO: D-arabinono-1,4- 97.0 0.0018 3.9E-08 65.4 7.2 119 426-559 127-253 (259)
37 PLN00107 FAD-dependent oxidore 97.0 0.007 1.5E-07 60.0 10.9 133 416-560 48-197 (257)
38 TIGR02963 xanthine_xdhA xanthi 96.3 0.025 5.4E-07 62.0 10.8 149 112-284 191-358 (467)
39 PRK09799 putative oxidoreducta 96.2 0.009 1.9E-07 60.3 6.3 142 115-283 4-155 (258)
40 PF00941 FAD_binding_5: FAD bi 95.9 0.0028 6E-08 59.9 1.0 119 113-251 2-140 (171)
41 TIGR03312 Se_sel_red_FAD proba 95.9 0.014 2.9E-07 59.0 5.9 99 116-225 4-110 (257)
42 PRK09971 xanthine dehydrogenas 94.3 0.061 1.3E-06 55.3 5.2 149 115-287 6-176 (291)
43 TIGR03195 4hydrxCoA_B 4-hydrox 93.2 0.09 1.9E-06 54.7 4.0 100 114-224 5-117 (321)
44 TIGR03199 pucC xanthine dehydr 93.0 0.053 1.1E-06 55.0 1.9 96 119-224 1-109 (264)
45 PLN02906 xanthine dehydrogenas 92.6 0.4 8.7E-06 59.2 9.1 102 113-225 228-351 (1319)
46 COG1319 CoxM Aerobic-type carb 89.8 0.69 1.5E-05 47.2 6.1 103 113-225 3-118 (284)
47 PLN00192 aldehyde oxidase 88.9 0.73 1.6E-05 57.0 6.6 107 112-225 232-353 (1344)
48 TIGR02969 mam_aldehyde_ox alde 88.6 0.64 1.4E-05 57.4 5.9 101 114-225 237-359 (1330)
49 COG4630 XdhA Xanthine dehydrog 87.3 1.4 3.1E-05 45.9 6.5 144 110-270 200-354 (493)
50 PF09330 Lact-deh-memb: D-lact 40.3 31 0.00067 34.9 3.6 17 546-562 267-283 (291)
51 PF00076 RRM_1: RNA recognitio 31.2 1.2E+02 0.0025 22.7 5.0 40 272-311 20-59 (70)
52 TIGR00178 monomer_idh isocitra 29.4 3.5E+02 0.0075 30.6 9.6 135 119-268 308-460 (741)
53 COG4981 Enoyl reductase domain 28.8 67 0.0014 35.6 4.1 53 88-146 123-182 (717)
54 PF03614 Flag1_repress: Repres 21.7 5.6E+02 0.012 23.6 7.9 34 116-153 9-43 (165)
55 cd07033 TPP_PYR_DXS_TK_like Py 21.3 1.2E+02 0.0026 27.7 3.9 33 110-146 120-153 (156)
56 COG3426 Butyrate kinase [Energ 20.9 2.2E+02 0.0047 29.2 5.7 81 110-200 121-229 (358)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=2.3e-96 Score=792.10 Aligned_cols=513 Identities=65% Similarity=1.114 Sum_probs=476.4
Q ss_pred hhHHHHHHHHHHHHhhcccccCcccCCCccccccccCCCeeecc--hhhhHhhhccCccCCCCcEEEeCCCHHHHHHHHH
Q 008291 53 NNMLFIRSFMVLFLCCITVKINLCFSGIPYSLKTLTLDGHLNFD--EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVK 130 (571)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~v~~~--~~~~~~~d~~~~~~~~p~~vv~P~s~~dv~~~v~ 130 (571)
+....+++++++++++.......|++........+.+.|++.+| ++..|++||++.+...|.+|++|+|++||+++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr 82 (525)
T PLN02441 3 SLMLSLRLLLILFLSSLTSSVGLCSSPSSLLPKLLSLDGHLSFDPVSTASASKDFGNLVHSLPAAVLYPSSVEDIASLVR 82 (525)
T ss_pred chHHHHHHHHHHHHHHhhhccCcccCcccccccccccCceEEeCHHHHHHHhcCcccccCCCCCEEEeCCCHHHHHHHHH
Confidence 45566889999999999999888876544444444579999999 7888999999999999999999999999999999
Q ss_pred HHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCCCC-----eEEEeCCcceEEEEcCCCcHHHHHHHHHhCCCc
Q 008291 131 HIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGP-----KMQVYAENSFYVDVSGGELWINILHESVKYGLA 205 (571)
Q Consensus 131 ~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~~i-----~i~i~~~~~~~v~v~aG~~~~~l~~~l~~~Gl~ 205 (571)
+|++ +.++++|++||+|||+.|++.+.+||+|||++||+| .++++.+. .+|+|+||++|.++++++.++|++
T Consensus 83 ~A~~--~~~~~~V~~rGgGHS~~G~a~~~~GivIdms~Ln~i~~~~~ii~vd~~~-~~VtV~aG~~~~dv~~~l~~~Gla 159 (525)
T PLN02441 83 AAYG--SSSPLTVAARGHGHSLNGQAQAPGGVVVDMRSLRGGVRGPPVIVVSGDG-PYVDVSGGELWIDVLKATLKHGLA 159 (525)
T ss_pred HHhh--ccCCceEEEECCCcCCCCCccCCCeEEEECCCCCCcCccCceEEEcCCC-CEEEEcCCCCHHHHHHHHHHCCCc
Confidence 9984 227999999999999999999888999999999992 26788777 899999999999999999999999
Q ss_pred cCCCCCCCceeecccccCCccCCCcccccCccccEEEEEEEecCCeEEEcCCCCCCchhHhhhcCCCCceEEEEEEEeee
Q 008291 206 PKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLE 285 (571)
Q Consensus 206 ~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~~~~~~~~dL~~~~~Gs~G~~GIIt~~tl~l~ 285 (571)
|++++++..+||||+++|+|+|+++++||.++|||+++|||+++|++++|++.+|+|||||++||+|+|||||++|++++
T Consensus 160 P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~GglG~fGIIT~atlrL~ 239 (525)
T PLN02441 160 PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGLGQFGIITRARIALE 239 (525)
T ss_pred cCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCCCCcEEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceEEEEEEeCCHHHHHHHHHHHHh--cCCccccccceEEecccccccccccc-CCCCCccccccCCCCCCeEEEEE
Q 008291 286 PAPDMVKWIRVLYSDFATFARDQEYLIS--AEKTFDYIEGFVMVNRTGLLNNWRSS-FDPQDPVQASQFKSDGQTLFCLE 362 (571)
Q Consensus 286 p~p~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~e~vd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le 362 (571)
|+|+.++|+.+.|.++++++++++.+++ .+..+||+|++++...++..++|+++ |.++++.++..++++++.+||+|
T Consensus 240 Pap~~v~~~~~~y~~~~~~~~d~~~li~~~~~~~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~le 319 (525)
T PLN02441 240 PAPKRVRWIRVLYSDFSTFTRDQERLISRPPENSFDYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSDGGVLYCLE 319 (525)
T ss_pred ecCCceEEEEEEcCCHHHHHHHHHHHHhcCCCCCcceEeEEEEeCCCCceeeeecccCCccccchhhccccCCceEEEEE
Confidence 9999999999999999999999999987 24469999999998867788999986 88888888888888999999999
Q ss_pred EeeecCCCChHHHHHHHHHHHhhcccCCCeeeeccchhhhhhhhhhhhHHHHHhcccccCCccceecccCcccHHHHHHH
Q 008291 363 LAKYINKDEKDLVNQEVESSLSVLNYIPSTLFLSEVSYIEFLDRVHVSEVKLRSKGLWEVPHPWLNLFIPQSKIHDFARE 442 (571)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~dv~y~~~l~~~~~~~~~~~~~~~W~~r~~~~d~~vP~s~i~~f~~~ 442 (571)
+++||+..+.+.++++++.+++.|++.++..|..|++|++|++|++..+..++++|+|+++|||+|++||.+++.+|++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~ll~~L~~~~~~~~~~d~~y~~fl~rv~~~e~~lr~~G~W~~phPWlnlfvp~s~i~~f~~~ 399 (525)
T PLN02441 320 VAKYYDEDTSDTVDQEVESLLKRLSFIPGLLFTTDVSYVDFLDRVHVEELKLRSKGLWEVPHPWLNLFVPKSRIADFDDG 399 (525)
T ss_pred EEEeeCCCCccchhhHHHHHHhhcCCCCCCceecccCHHHHHHhhhhHHHHHhhcCCcCCCCchhheeCcHHHHHHHHHH
Confidence 99999988888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCccEEEecCCCCCCCCCCCccCCCcceEEeeeecCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCcee
Q 008291 443 VFGNILAETSNGPILIYPLNKSKWDNRTSVVIPEEDVFYLVAFLSSAVPSSKGTDGLEHILTQNKRILEYCETARLGVKQ 522 (571)
Q Consensus 443 v~~~il~~~~~g~i~~~p~~~~~~~~~~~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~G~~~~~ 522 (571)
||+.|+.+..+|++++||+++.+|+.+.+.++|++++||+|++++.+.|+ ++.++++++||++|+++|++.|++.|+
T Consensus 400 v~~~i~~~~~~G~~liyP~~~~~~~~~~s~~~P~~~~~y~v~~l~~~~p~---~~~~~~~~~~n~~i~~~~~~~g~~~k~ 476 (525)
T PLN02441 400 VFKGILLDGTNGPILVYPLNRSKWDNRTSAVIPDEDIFYLVALLRSALPS---GDDLEHLLAQNKEILRFCEKAGIGVKQ 476 (525)
T ss_pred HHhhcccccCCCeEEEEecccccCCCCCccccCCCCeEEEEEEcCCCCCC---cccHHHHHHHHHHHHHHHHHcCCceEE
Confidence 99999887777999999999999999999999999999999999988773 347999999999999999999999999
Q ss_pred ccCCCCCHHHHHHhhchhHHHHHHhhhcCCCCCCCCCCCcccCCCCCCC
Q 008291 523 YLPHYTTQEQWRSHFGPQWEVFVQRKSTYDPLAILAPGQRIFQKAMPFS 571 (571)
Q Consensus 523 Yl~~~~~~~~w~~~yG~~~~~l~~lK~~yDP~~ifnPG~~If~~~~~~~ 571 (571)
|+++|.++++|++|||.+|++|+++|++|||++||+|||+||++++.++
T Consensus 477 Yl~~~~~~~~W~~HfG~~w~~f~~~K~~yDP~~iL~pgq~if~~~~~~~ 525 (525)
T PLN02441 477 YLPHYTTQEEWKRHFGPKWETFVRRKAKFDPLAILSPGQRIFNRASSSL 525 (525)
T ss_pred cCCCCCCHHHHHHHhcchHHHHHHHHhhCCchhhcCCCCccCCCCCCCC
Confidence 9999999999999999999999999999999999999999999998764
No 2
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=4.4e-90 Score=699.54 Aligned_cols=487 Identities=53% Similarity=0.872 Sum_probs=440.4
Q ss_pred HHHHHHHHhhcccccCcccCCCccccccc--cCCCeeecc--hhhhHhhhccCccCCCCcEEEeCCCHHHHHHHHHHHHH
Q 008291 59 RSFMVLFLCCITVKINLCFSGIPYSLKTL--TLDGHLNFD--EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWE 134 (571)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~g~v~~~--~~~~~~~d~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~ 134 (571)
++++++++++.....+.|.+.+++..+.+ .+.|++.++ ..+..++||++++...|.+|++|+|+|||++++|+|+.
T Consensus 6 ~lflI~~l~~i~~~~p~~~ks~~~~~~~l~~~~~~~~~~~~~~~a~~s~dFg~~~~~~P~aVL~P~S~edVs~ilk~~~~ 85 (505)
T KOG1231|consen 6 RLFLITLLSIIKLITPVITKSSESLKKILGNSLEGTLESDPSSVAHASTDFGNRTQLPPLAVLFPSSVEDVSKILKHCND 85 (505)
T ss_pred HHHHHHHHHHHhcccchhhccCcchhhhcCccccceeeccchhhhhhhhhccccCCCCCeeEEcCCCHHHHHHHHHHHhc
Confidence 44455556665544444444444444444 588999998 58889999999999999999999999999999999999
Q ss_pred hCCCCCcEEEEEcCCCCCCCCCcC-CCcEEEEcCC---CCCCeEEEeCCcceEEEEcCCCcHHHHHHHHHhCCCccCCCC
Q 008291 135 MGSHSELTVAARGHGHSLQGQAQA-HQGVVINMES---LQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWT 210 (571)
Q Consensus 135 ~~~~~~~~v~~rg~G~s~~g~~~~-~~givIdl~~---l~~i~i~i~~~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~ 210 (571)
.| .++||++||+|||+.|++.+ .+|++|.|+. |+++ ..+...+ .+|+|+||..|.||++++.++||.|..|+
T Consensus 86 ~~--s~~pVaarG~GhSl~Gqa~a~~~GvvV~m~~~~~~~~~-~~~~~~~-~yvdV~~g~~Widll~~t~e~GL~p~swt 161 (505)
T KOG1231|consen 86 YG--SNFPVAARGGGHSLEGQALATRGGVVVCMDSSLLMKDV-PVLVVDD-LYVDVSAGTLWIDLLDYTLEYGLSPFSWT 161 (505)
T ss_pred cC--CcceeeccCCcccccCccccCCCCeEEEEehhhccCCC-ceeeccc-ceEEeeCChhHHHHHHHHHHcCCCccCcC
Confidence 22 39999999999999999998 8998887765 3444 3344444 89999999999999999999999999999
Q ss_pred CCCceeecccccCCccCCCcccccCccccEEEEEEEecCCeEEEcCCCCCCchhHhhhcCCCCceEEEEEEEeeeecCCc
Q 008291 211 DYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDM 290 (571)
Q Consensus 211 ~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~~~~~~~~dL~~~~~Gs~G~~GIIt~~tl~l~p~p~~ 290 (571)
++.++||||+++|+|+|++++|||++++||++++||+++||+++|+++.|++||++++||+||||||||||++|+|+|++
T Consensus 162 Dyl~ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf~~vlGglGqfGIITrArI~le~aP~~ 241 (505)
T KOG1231|consen 162 DYLPLTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNLFFLVLGGLGQFGIITRARIKLEPAPKR 241 (505)
T ss_pred CccceeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCceeeeeeeccCcceeeEEEEEEEeccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred eEEEEEEeCCHHHHHHHHHHHHhcCCccccccceEEecccccccccccc-CCCCCccccccCCCCCCeEEEEEEeeecCC
Q 008291 291 VKWIRVLYSDFATFARDQEYLISAEKTFDYIEGFVMVNRTGLLNNWRSS-FDPQDPVQASQFKSDGQTLFCLELAKYINK 369 (571)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~vd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~~~~~~~ 369 (571)
+++.+++....++|++++++.+++++.++||++ |.+.++.++..+.++....||+|+++||+.
T Consensus 242 ----------------dQe~lis~~~~fd~veg~~~~~~~gl~~n~r~s~f~l~D~~~i~~~~~~~~~~yclev~ky~d~ 305 (505)
T KOG1231|consen 242 ----------------DQERLISVCGSFDTVEGAAIVARNGLQSNIRVSRFELLDEVQIAAINSDHSTNYCLEVAKYYDL 305 (505)
T ss_pred ----------------chHHhhhhhcCCcchhhhhhhhhccccccceeeccccCcHHHHHHHHhcCCeeeeeehhhccCc
Confidence 567777754579999999999989999999999 888888888888889999999999999998
Q ss_pred CChHHHHHHHHHHHhhcccCCCeeeeccchhhhhhhhhhhhHHHHHhcccccCCccceecccCcccHHHHHHHHHHhhhc
Q 008291 370 DEKDLVNQEVESSLSVLNYIPSTLFLSEVSYIEFLDRVHVSEVKLRSKGLWEVPHPWLNLFIPQSKIHDFAREVFGNILA 449 (571)
Q Consensus 370 ~~~~~~~~~l~~ll~~l~~~~~~~~~~dv~y~~~l~~~~~~~~~~~~~~~W~~r~~~~d~~vP~s~i~~f~~~v~~~il~ 449 (571)
.+...+.+++..+.+.+.+.++..+..+++|.+|+||+++++++++++++|++||||+++++|++++.+|.+.++.+|+.
T Consensus 306 ~e~pti~~e~~~l~~~l~~~~~~~~~~~v~y~~fldrv~~ae~klrskgLWevphpWlnL~vpks~i~~fa~gv~~dIl~ 385 (505)
T KOG1231|consen 306 TEAPTLFQEIGGLSEKLNYAPTFIVEQDVQYHDFLDRVHFAEDKLRSKGLWEVPHPWLNLAVPKSRISDFARGVFTDILV 385 (505)
T ss_pred ccCchHHHHHhccchhhhccchhhhhhhhHHHHhhhHhhhcccchhhcccccCCCchheeecccccchhhhhhhccceee
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCccEEEecCCCC-CCCCCCCccCC--CcceEEeeeecCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCceeccCC
Q 008291 450 ETSNGPILIYPLNKS-KWDNRTSVVIP--EEDVFYLVAFLSSAVPSSKGTDGLEHILTQNKRILEYCETARLGVKQYLPH 526 (571)
Q Consensus 450 ~~~~g~i~~~p~~~~-~~~~~~~~~~p--~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~G~~~~~Yl~~ 526 (571)
....++.++||+++. +|..+.++++| .|++||+++++.+. +++..+++.++|++++++|.+.|++.++|++|
T Consensus 386 ~~s~g~~liyptnk~~kw~~~~sav~ph~~e~vFy~v~~l~s~-----~~~~~e~~~~~n~riv~fc~~ag~~~keyl~~ 460 (505)
T KOG1231|consen 386 PNSSGPVLIYPTNKDLKWSNRLSAVTPHAGEGVFYLVILLRSS-----GKEEHEELEQLNDRIVKFCLAAGTCTKEYLPH 460 (505)
T ss_pred ccCCCceEEeccccCcchhhhhccccccCCCceEEEEEEecCC-----CchhHHHHHHHHHHHHHHHHHcCcChhhhcCC
Confidence 777799999999998 99999999999 89999999999874 45678999999999999999999999999999
Q ss_pred CCCHHHHHHhhchhHHHHHHhhhcCCCCCCCCCCCcccCCCCCC
Q 008291 527 YTTQEQWRSHFGPQWEVFVQRKSTYDPLAILAPGQRIFQKAMPF 570 (571)
Q Consensus 527 ~~~~~~w~~~yG~~~~~l~~lK~~yDP~~ifnPG~~If~~~~~~ 570 (571)
|.++|+|.+|||++|.+|.++|.+|||++||||||.||+++.-+
T Consensus 461 ~~~~e~w~~hfG~~w~~f~~~K~~~DPk~Il~PGq~Ifq~~~~~ 504 (505)
T KOG1231|consen 461 YGKREYWVEHFGEKWVDFMRIKKAYDPKRILNPGQRIFQKPNSP 504 (505)
T ss_pred cccHHHHHHHhChhHHHHHHHHhhcCHHHhcCCccccccCCCCC
Confidence 99999999999999999999999999999999999999987643
No 3
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=100.00 E-value=1.3e-54 Score=430.07 Aligned_cols=276 Identities=65% Similarity=1.162 Sum_probs=230.7
Q ss_pred CCceEEEEEEeCCHHHHHHHHHHHHhcCCc--cccccceEEecccccccccccc-CCCCCccccccCCC-CCCeEEEEEE
Q 008291 288 PDMVKWIRVLYSDFATFARDQEYLISAEKT--FDYIEGFVMVNRTGLLNNWRSS-FDPQDPVQASQFKS-DGQTLFCLEL 363 (571)
Q Consensus 288 p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~e~vd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~le~ 363 (571)
|++++|+++.|.|+++++++++.|++.+.. ++||||+++++.+++.++|+++ |.++++.++..+++ +++++||+|+
T Consensus 1 p~~vrw~r~~Y~df~~ft~DqE~Lis~~~~~~~DYvEGfv~~n~~~~~~~w~s~~f~~~~~~~~~~l~~~~g~~lY~LE~ 80 (281)
T PF09265_consen 1 PKRVRWIRLLYSDFATFTRDQERLISKPESGAFDYVEGFVILNRQGLINNWRSSFFSPSDPARISSLVSENGGWLYCLEV 80 (281)
T ss_dssp -SEEEEEEEEES-HHHHHHHHHHHHTCBTTTS-SEEEEEEEECCGHCCCCHCCSSSSCCCHHHHHHCHCCT-SEEEEEEE
T ss_pred CCceEEEEeeeccHHHHHhhHHHHhcCCCCCCcceeceeeeecCCCCcCCccCCCCCcccccccccccccCCCEEEEEEE
Confidence 678999999999999999999999996554 9999999999999999999999 88888777777776 7889999999
Q ss_pred eeecCCCChHHHHHHHHHHHhhcccCCCeeeeccchhhhhhhhhhhhHHHHHhcccccCCccceecccCcccHHHHHHHH
Q 008291 364 AKYINKDEKDLVNQEVESSLSVLNYIPSTLFLSEVSYIEFLDRVHVSEVKLRSKGLWEVPHPWLNLFIPQSKIHDFAREV 443 (571)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~dv~y~~~l~~~~~~~~~~~~~~~W~~r~~~~d~~vP~s~i~~f~~~v 443 (571)
++||+..+.++++++++.+++.|++.++..+..|++|.+|++|++..+..++++|+|+++|||+|++||.+++.+|++.|
T Consensus 81 a~~y~~~~~~~vd~~~~~LL~~L~~~~~~~f~~DvsY~dFL~Rv~~~E~~Lr~~G~WdvPHPWlnlfvP~s~i~dF~~~V 160 (281)
T PF09265_consen 81 AKYYDPPTAPDVDQEVEALLAGLSFIPGLAFTEDVSYVDFLDRVHSSEEKLRSKGLWDVPHPWLNLFVPKSRIEDFDRGV 160 (281)
T ss_dssp EEEE-TTTHHHHHHHHHHHHTT--S-TT-EEEEEEEHHHHHTCCHHHHHHHHHCTTSSS----EEEEEEHHHHHHHHHHC
T ss_pred EEecCCccchhhHHHHHHHHhhcCCCcCceeeccccHHHHHHHhhhHHHHHHhcCCccccCcceeeecchHHHHHHHHHH
Confidence 99999888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCC-ccEEEecCCCCCCCCCCCccCCCcceEEeeeecCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCcee
Q 008291 444 FGNILAETSN-GPILIYPLNKSKWDNRTSVVIPEEDVFYLVAFLSSAVPSSKGTDGLEHILTQNKRILEYCETARLGVKQ 522 (571)
Q Consensus 444 ~~~il~~~~~-g~i~~~p~~~~~~~~~~~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~G~~~~~ 522 (571)
++.|+++..+ |++++||+++.+|+++.+.+.|++++||+|++++.+.|. .+++.++++++||++|+++|.+.|++.|+
T Consensus 161 ~~~il~~~~~~GpiLvYP~~~~kwd~~~s~v~Pde~vfylv~lLrsa~P~-~~~~~l~~l~~qN~~il~~c~~agi~~k~ 239 (281)
T PF09265_consen 161 FKGILKDDGNSGPILVYPLNRSKWDTRMSAVIPDEDVFYLVALLRSADPS-DGPDDLERLLEQNRRILEFCRKAGIGGKQ 239 (281)
T ss_dssp CCCCTTTS-S-SEEEEEEEEGGGS-TTSS----SSSEEEEEEEEE---TT-SSCCHHHHHHHHHHHHHHHHHHTT--EEE
T ss_pred HHHhhccCCCCceEEEEEecccccCCCCcccCCCCCeEEEEEEeCCCCCC-CCchhHHHHHHHHHHHHHHHHHcCCceEE
Confidence 9999877666 999999999999999999999999999999999999776 56689999999999999999989999999
Q ss_pred ccCCCCCHHHHHHhhchhHHHHHHhhhcCCCCCCCCCCCccc
Q 008291 523 YLPHYTTQEQWRSHFGPQWEVFVQRKSTYDPLAILAPGQRIF 564 (571)
Q Consensus 523 Yl~~~~~~~~w~~~yG~~~~~l~~lK~~yDP~~ifnPG~~If 564 (571)
|+++|.++++|+.|||++|++|+++|++|||++||+|||+||
T Consensus 240 Yl~~~~t~~dW~~HFG~~W~~f~~~K~~yDP~~IL~PGq~IF 281 (281)
T PF09265_consen 240 YLPHYTTQEDWRRHFGPKWERFVERKRRYDPKAILAPGQGIF 281 (281)
T ss_dssp SS---SSHHHHHHHHGHHHHHHHHHHHHH-TT--B-GGG-SS
T ss_pred CCCCCCCHHHHHHHhchHHHHHHHHHHhCCchhhcCCCCCCC
Confidence 999999999999999999999999999999999999999998
No 4
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=1.8e-52 Score=458.01 Aligned_cols=411 Identities=17% Similarity=0.242 Sum_probs=291.6
Q ss_pred CCCeeecc--hhhhHhhhccCccC--CCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcC-CCcEE
Q 008291 89 LDGHLNFD--EVHNAARDFGNRYQ--LLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQA-HQGVV 163 (571)
Q Consensus 89 ~~g~v~~~--~~~~~~~d~~~~~~--~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~-~~giv 163 (571)
+.+.+.+| +...|.+|++..+. ..|.+|++|+|++||+++|++|++ +++||++||||||+.|++.+ .+||+
T Consensus 106 l~~~v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~a~~----~~ipv~prGgGts~~G~~~~~~ggiv 181 (555)
T PLN02805 106 LQDNMTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSCNK----YKVPIVPYGGATSIEGHTLAPHGGVC 181 (555)
T ss_pred cCCceecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHHHHH----CCCcEEEECCCCCCCCCccCCCCEEE
Confidence 45678888 56678888754332 579999999999999999999999 99999999999999998876 57999
Q ss_pred EEcCCCCCCeEEEeCCcceEEEEcCCCcHHHHHHHHHhCCCccCCCCCCCceeecccccCCccCCCcccccCccccEEEE
Q 008291 164 INMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQL 243 (571)
Q Consensus 164 Idl~~l~~i~i~i~~~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~l 243 (571)
|||++||+| +++|.++ .+|+||||+++.+|+++|.++|++.+..++ ..+||||+++++++|..+.+||.++|+|+++
T Consensus 182 Idl~~mn~I-~~id~~~-~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~-~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~l 258 (555)
T PLN02805 182 IDMSLMKSV-KALHVED-MDVVVEPGIGWLELNEYLEPYGLFFPLDPG-PGATIGGMCATRCSGSLAVRYGTMRDNVISL 258 (555)
T ss_pred EEccCCCCe-EEEeCCC-CEEEEeCCcCHHHHHHHHHHcCCEeCCCCc-cccChhhHhhCCCcccccCccccHHHhEEEE
Confidence 999999998 7898888 899999999999999999999996333333 4689999999999899999999999999999
Q ss_pred EEEecCCeEEEcCCC-----CCCchhHhhhcCCCCceEEEEEEEeeeecCCceEEEEEEeCCHHHHHHHHHHHHhc---C
Q 008291 244 EVVTGKGEIINCSEK-----QNSELFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLISA---E 315 (571)
Q Consensus 244 evV~~~G~i~~~~~~-----~~~dL~~~~~Gs~G~~GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~l~~~---~ 315 (571)
+||++||++++++.. .++||+|+++||+|+|||||++++|+.|.|+.+..+.+.|++++++.+++..++.. +
T Consensus 259 evVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~~~g~~p 338 (555)
T PLN02805 259 KVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATMLSGIQV 338 (555)
T ss_pred EEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHHhCCCCc
Confidence 999999999987532 46899999999999999999999999999999888999999999999999887752 5
Q ss_pred CccccccceEEeccccccccccccCCCCCccccccCCCCCCeEEEEEEeeecCCCChHHHHHHHHHHHhhcccCCCe--e
Q 008291 316 KTFDYIEGFVMVNRTGLLNNWRSSFDPQDPVQASQFKSDGQTLFCLELAKYINKDEKDLVNQEVESSLSVLNYIPST--L 393 (571)
Q Consensus 316 ~~~e~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~--~ 393 (571)
..+|++|...+... +. +.. ..+|. .+.+++|+ ++.+ ++++++.+.+.+.+...++. .
T Consensus 339 sa~ElmD~~~~~~~----~~----~~~------~~~p~--~~~Ll~e~----~g~~-~~~~~~~~~~~~i~~~~g~~~~~ 397 (555)
T PLN02805 339 SRVELLDEVQIRAI----NM----ANG------KNLPE--APTLMFEF----IGTE-AYAREQTLIVQKIASKHNGSDFV 397 (555)
T ss_pred EEEEEECHHHHHHH----HH----hcC------CCCCc--ceEEEEEE----ecCc-HHHHHHHHHHHHHHHhCCCceEE
Confidence 56888877543211 00 000 11232 46788885 4433 34554555555444333322 1
Q ss_pred eeccchhhhhhhhhhhhHHHHHhcccccCCc---------------cceecccCcccHHHHHHHHHHhhhcccCCccEEE
Q 008291 394 FLSEVSYIEFLDRVHVSEVKLRSKGLWEVPH---------------PWLNLFIPQSKIHDFAREVFGNILAETSNGPILI 458 (571)
Q Consensus 394 ~~~dv~y~~~l~~~~~~~~~~~~~~~W~~r~---------------~~~d~~vP~s~i~~f~~~v~~~il~~~~~g~i~~ 458 (571)
+..+ ..+...+|..|+ -+.|++||.+++++|++++ ++++.... ..+..
T Consensus 398 ~a~~---------------~~e~~~lW~~R~~~~~~~~~~~~~~~~~~~DvaVP~s~L~e~i~~~-~~~~~~~~-~~~~~ 460 (555)
T PLN02805 398 FAEE---------------PEAKKELWKIRKEALWACFAMEPKYEAMITDVCVPLSHLAELISRS-KKELDASP-LVCTV 460 (555)
T ss_pred EeCC---------------HHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEHHHHHHHHHHH-HHHHHHcC-CeEEE
Confidence 1111 111112222221 2469999999999999997 45553221 22222
Q ss_pred ecCCCCCCCCCCCccCCCcceEEeeeecCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCceeccCCC--CCHHHH-HH
Q 008291 459 YPLNKSKWDNRTSVVIPEEDVFYLVAFLSSAVPSSKGTDGLEHILTQNKRILEYCETARLGVKQYLPHY--TTQEQW-RS 535 (571)
Q Consensus 459 ~p~~~~~~~~~~~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~G~~~~~Yl~~~--~~~~~w-~~ 535 (571)
+...+ +..++..+ +. .+ ..++..+++.+..+++.+.+.+.|+. .+-.|- ....+| ..
T Consensus 461 ~gHaG------------dGnlH~~i--~~--~~--~~~~~~~~~~~~~~~i~~~~~~~gGs--iSgEHGiG~~k~~~l~~ 520 (555)
T PLN02805 461 IAHAG------------DGNFHTII--LF--DP--SQEDQRREAERLNHFMVHTALSMEGT--CTGEHGVGTGKMKYLEK 520 (555)
T ss_pred EEEcC------------CCcEEEEe--cc--CC--CCHHHHHHHHHHHHHHHHHHHHcCCe--EeEECCCChhHHHHHHH
Confidence 32211 12222222 11 01 11123445556666677766654422 233341 233444 36
Q ss_pred hhch-hHHHHHHhhhcCCCCCCCCCCCcccC
Q 008291 536 HFGP-QWEVFVQRKSTYDPLAILAPGQRIFQ 565 (571)
Q Consensus 536 ~yG~-~~~~l~~lK~~yDP~~ifnPG~~If~ 565 (571)
.||+ .++.|+++|+.|||+||||||+ ||+
T Consensus 521 ~~g~~~~~lm~~IK~a~DP~gILNPGK-i~~ 550 (555)
T PLN02805 521 ELGIEALQTMKRIKKALDPNNIMNPGK-LIP 550 (555)
T ss_pred hcCHHHHHHHHHHHHHhCcCcCCCCCc-eeC
Confidence 6785 6999999999999999999996 555
No 5
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=4.8e-52 Score=452.42 Aligned_cols=428 Identities=17% Similarity=0.257 Sum_probs=304.7
Q ss_pred ccccccCCCeeecc--hhhhHhhhccCccCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcC-C
Q 008291 83 SLKTLTLDGHLNFD--EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQA-H 159 (571)
Q Consensus 83 ~l~~~~~~g~v~~~--~~~~~~~d~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~-~ 159 (571)
+|+++.....|.++ ....|++|++..++..|.+|++|+|++||+++|++|++ +++||++||+||++.|++.+ .
T Consensus 24 ~l~~~~g~~~v~~~~~~~~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~----~~ipv~~rG~Gt~~~gg~~~~~ 99 (499)
T PRK11230 24 ALREHLPGLEILHTDEELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVCHR----LRVPVVARGAGTGLSGGALPLE 99 (499)
T ss_pred HHHHhcCcceEEcCHHHHHHhccCcccccCCCCCEEEeeCCHHHHHHHHHHHHH----cCCeEEEECCCcCcCCCcccCC
Confidence 45555555678887 67889999877788999999999999999999999999 99999999999999988776 5
Q ss_pred CcEEEEcCCCCCCeEEEeCCcceEEEEcCCCcHHHHHHHHHhCCCc-cCCCCCCCceeecccccCCccCCCcccccCccc
Q 008291 160 QGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLA-PKSWTDYLHLTVGGTLSNAGISGQAFQHGPQIS 238 (571)
Q Consensus 160 ~givIdl~~l~~i~i~i~~~~~~~v~v~aG~~~~~l~~~l~~~Gl~-~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d 238 (571)
+||+|||++||+| +++|+++ .+|+||||+++.+|.++|.++|++ |+++++...+||||++++++.|..+.+||.+.|
T Consensus 100 ~gividl~~ln~I-~~id~~~-~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d 177 (499)
T PRK11230 100 KGVLLVMARFNRI-LDINPVG-RRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVH 177 (499)
T ss_pred CcEEEEcccCCCc-eEEcCCC-CEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhh
Confidence 7999999999998 8999888 899999999999999999999996 677777778999999998888999999999999
Q ss_pred cEEEEEEEecCCeEEEcCCC----CCCchhHhhhcCCCCceEEEEEEEeeeecCCceEEEEEEeCCHHHHHHHHHHHHhc
Q 008291 239 NVHQLEVVTGKGEIINCSEK----QNSELFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLISA 314 (571)
Q Consensus 239 ~v~~levV~~~G~i~~~~~~----~~~dL~~~~~Gs~G~~GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (571)
+|++++||++||++++++.. .++||+|+++||+|+|||||++|||++|.|+...++.+.|++++++.+++..+...
T Consensus 178 ~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~ 257 (499)
T PRK11230 178 NLLKVEILTLDGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAA 257 (499)
T ss_pred heeEEEEEcCCCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHhc
Confidence 99999999999999999854 47899999999999999999999999999999889999999999999998887753
Q ss_pred ---CCccccccceEEeccccccccccccCCCCCccccccCCCCCCeEEEEEEeeecCCCChHHHHHHHHHHHhhcccCCC
Q 008291 315 ---EKTFDYIEGFVMVNRTGLLNNWRSSFDPQDPVQASQFKSDGQTLFCLELAKYINKDEKDLVNQEVESSLSVLNYIPS 391 (571)
Q Consensus 315 ---~~~~e~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~ll~~l~~~~~ 391 (571)
+..+|++|...+..... +.. ..+|.+..+++++|+ ++.+ ++++++++.+.+.+...++
T Consensus 258 ~~~p~~~el~d~~~~~~~~~--------~~~------~~~p~~~~~~ll~e~----~g~~-~~v~~~~~~l~~~~~~~g~ 318 (499)
T PRK11230 258 GIIPGGLEMMDNLSIRAAED--------FIH------AGYPVDAEAILLCEL----DGVE-SDVQEDCERVNDILLKAGA 318 (499)
T ss_pred CCCcEEEEeeCHHHHHHHHH--------hcC------CCCCCCcceEEEEEe----cCCc-hHHHHHHHHHHHHHHhcCC
Confidence 45678887654321110 100 113334457788885 4433 4455566666666654432
Q ss_pred e--eeeccc-hhhhhh-hhhhhhHHHHHh--cccccCCccceecccCcccHHHHHHHHHHhhhcccCCccEEEecCCCCC
Q 008291 392 T--LFLSEV-SYIEFL-DRVHVSEVKLRS--KGLWEVPHPWLNLFIPQSKIHDFAREVFGNILAETSNGPILIYPLNKSK 465 (571)
Q Consensus 392 ~--~~~~dv-~y~~~l-~~~~~~~~~~~~--~~~W~~r~~~~d~~vP~s~i~~f~~~v~~~il~~~~~g~i~~~p~~~~~ 465 (571)
. .+..+. ....++ .|.... ..... ... ...|++||.++++++++.+ +++....+....+++ ..+.
T Consensus 319 ~~~~~a~~~~~~~~~W~~R~~~~-~~~~~~~~~~-----~~~dv~vP~~~l~~~~~~~-~~~~~~~~~~~~~~g-H~Gd- 389 (499)
T PRK11230 319 TDVRLAQDEAERVRFWAGRKNAF-PAVGRISPDY-----YCMDGTIPRRELPGVLEGI-ARLSQQYGLRVANVF-HAGD- 389 (499)
T ss_pred ceEEEeCCHHHHHHHHHHHHhhH-HHHHhhCCCe-----eEEeecCChHHHHHHHHHH-HHHHHHcCCeEEEEE-EeCC-
Confidence 2 111111 111121 221111 11110 011 1359999999999999987 455533221111111 1110
Q ss_pred CCCCCCccCCCcceEEeeeecCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCceeccCC---CCCHHHHHHhhch-hH
Q 008291 466 WDNRTSVVIPEEDVFYLVAFLSSAVPSSKGTDGLEHILTQNKRILEYCETARLGVKQYLPH---YTTQEQWRSHFGP-QW 541 (571)
Q Consensus 466 ~~~~~~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~G~~~~~Yl~~---~~~~~~w~~~yG~-~~ 541 (571)
..+++.+. +. . +.++..+.+.+..+++.+.+.+.|+.. ...| ....+.|...||+ .+
T Consensus 390 -----------Gn~H~~i~-~~---~--~~~~~~~~~~~~~~~l~~~~~~~GG~i--s~EHGiG~~k~~~l~~~~g~~~~ 450 (499)
T PRK11230 390 -----------GNMHPLIL-FD---A--NEPGELERAEALGGKILELCVEVGGSI--TGEHGVGREKINQMCAQFNSDEI 450 (499)
T ss_pred -----------Ccceeeec-CC---C--CCHHHHHHHHHHHHHHHHHHHHcCCeE--eeeccCchhhHHHHHHhcCHHHH
Confidence 11122111 00 1 111223444455556666666555332 2333 2233445567885 69
Q ss_pred HHHHHhhhcCCCCCCCCCCCcc
Q 008291 542 EVFVQRKSTYDPLAILAPGQRI 563 (571)
Q Consensus 542 ~~l~~lK~~yDP~~ifnPG~~I 563 (571)
..|+++|+.|||+||||||+.+
T Consensus 451 ~~m~~IK~~fDP~~iLNPGk~~ 472 (499)
T PRK11230 451 TLFHAVKAAFDPDGLLNPGKNI 472 (499)
T ss_pred HHHHHHHHHcCCCcCCCCCeEe
Confidence 9999999999999999999754
No 6
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=1.6e-46 Score=402.57 Aligned_cols=396 Identities=17% Similarity=0.255 Sum_probs=272.5
Q ss_pred EEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcC-CCcEEEEcCCCCCCeEEEeCCcceEEEEcCCCcHHH
Q 008291 116 VLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQA-HQGVVINMESLQGPKMQVYAENSFYVDVSGGELWIN 194 (571)
Q Consensus 116 vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~-~~givIdl~~l~~i~i~i~~~~~~~v~v~aG~~~~~ 194 (571)
||+|+|++||+++|++|++ +++||++||+|||+.|.+.+ .++++|||++||+| +++|+++ .+|+||||+++.+
T Consensus 1 Vv~P~s~eev~~iv~~a~~----~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~i-~~id~~~-~~v~veaGv~~~~ 74 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHE----HRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNKI-LEIDVVN-LTAVVQPGVRNLE 74 (413)
T ss_pred CCCCCCHHHHHHHHHHHHH----cCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCce-eEEcCCC-CEEEEcCCccHHH
Confidence 6899999999999999999 99999999999999887765 57899999999998 7999887 8999999999999
Q ss_pred HHHHHHhCCCc-cCCCCCCCceeecccccCCccCCCcccccCccccEEEEEEEecCCeEEEcCCC-----CCCchhHhhh
Q 008291 195 ILHESVKYGLA-PKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEK-----QNSELFHSVL 268 (571)
Q Consensus 195 l~~~l~~~Gl~-~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~~~~~-----~~~dL~~~~~ 268 (571)
|.++|.++|++ |+++++...+||||+++++++|..+.+||.++|+|++++||++||++++++.. .++||++++.
T Consensus 75 l~~~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~ 154 (413)
T TIGR00387 75 LEQAVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFV 154 (413)
T ss_pred HHHHHHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcc
Confidence 99999999996 56777767899999999888888999999999999999999999999998753 3679999999
Q ss_pred cCCCCceEEEEEEEeeeecCCceEEEEEEeCCHHHHHHHHHHHHhc---CCccccccceEEeccccccccccccCCCCCc
Q 008291 269 GGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLISA---EKTFDYIEGFVMVNRTGLLNNWRSSFDPQDP 345 (571)
Q Consensus 269 Gs~G~~GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~e~vd~~~~~~~~~~~~~~~~~~~~~~~ 345 (571)
||+|+|||||+++||++|.|+....+.+.|++++++.+++..++.. +..+|++|...+..... +.
T Consensus 155 Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~a~el~d~~~~~~~~~--------~~---- 222 (413)
T TIGR00387 155 GSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIAAGIIPAGMEFLDNLSIKAVED--------IS---- 222 (413)
T ss_pred cCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHhcCCCcEEEEccCHHHHHHHHH--------hc----
Confidence 9999999999999999999999888899999999999998887652 56678887644311100 00
Q ss_pred cccccCCCCCCeEEEEEEeeecCCCChHHHHHHHHHHHhhcccCCCeee--eccc-hhhhhhhhhhhhHHHHHhcccccC
Q 008291 346 VQASQFKSDGQTLFCLELAKYINKDEKDLVNQEVESSLSVLNYIPSTLF--LSEV-SYIEFLDRVHVSEVKLRSKGLWEV 422 (571)
Q Consensus 346 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~--~~dv-~y~~~l~~~~~~~~~~~~~~~W~~ 422 (571)
...+|.+....+++|+ ++.+ ++++++++++.+.++..+.... ..+- ....++...+.......... .
T Consensus 223 --~~~~p~~~~~~l~v~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~---~ 292 (413)
T TIGR00387 223 --GIGLPKDAGAILLVEI----DGVH-EAVERDEEKIEQICRKNGAVDVQIAQDEEERALLWAGRRNAFKAASKLS---P 292 (413)
T ss_pred --CCCCCCCCceEEEEEe----cCCc-HHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHHHHHhHHHHHhhC---C
Confidence 0123434456777884 4443 3466666666666554332211 1110 11111111111111111000 0
Q ss_pred CccceecccCcccHHHHHHHHHHhhhcccCCccEEEecCCCCCCCCCCCccCCCcceEEeeeecCCCCCCCCCCCcHHHH
Q 008291 423 PHPWLNLFIPQSKIHDFAREVFGNILAETSNGPILIYPLNKSKWDNRTSVVIPEEDVFYLVAFLSSAVPSSKGTDGLEHI 502 (571)
Q Consensus 423 r~~~~d~~vP~s~i~~f~~~v~~~il~~~~~g~i~~~p~~~~~~~~~~~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~ 502 (571)
...+.|++||.++++++++.+. +++.... ....++..... ..++. ..+.. . ..++..+.+
T Consensus 293 ~~~~~d~~vp~~~l~~~~~~~~-~~~~~~~-~~~~~~gH~g~------------g~lh~--~~~~~--~--~~~~~~~~~ 352 (413)
T TIGR00387 293 LYLIEDGTVPRSKLPEALRGIA-DIARKYD-FTIANFGHAGD------------GNLHP--TILTD--P--EDKGEMERV 352 (413)
T ss_pred CcceeEEecCHHHHHHHHHHHH-HHHHHcC-CeEEEEEEecC------------Ccccc--ccCCC--C--CCHHHHHHH
Confidence 1124699999999999999874 5543211 12222222111 00010 01100 0 011223444
Q ss_pred HHHHHHHHHHHHHcCCCceeccCC--CCCHHHHH-Hhhch-hHHHHHHhhhcCCCCCCCCCCC
Q 008291 503 LTQNKRILEYCETARLGVKQYLPH--YTTQEQWR-SHFGP-QWEVFVQRKSTYDPLAILAPGQ 561 (571)
Q Consensus 503 ~~~~r~i~~~~~~~G~~~~~Yl~~--~~~~~~w~-~~yG~-~~~~l~~lK~~yDP~~ifnPG~ 561 (571)
.+..+++.+.+.+.|+.. ...| .....+|. ..||+ .++.|+++|+.|||+||||||+
T Consensus 353 ~~~~~~~~~~~~~~gG~i--s~eHG~G~~r~~~~~~~~~~~~~~~~~~iK~~fDP~~ilNPGk 413 (413)
T TIGR00387 353 EEAGGEIFELAIELGGTI--SGEHGIGVVKAEFMPYKFNEKELETMRAIKKAFDPDNILNPGK 413 (413)
T ss_pred HHHHHHHHHHHHHcCCEE--EEeccCcHhHHHHHHHhcCHHHHHHHHHHHHHcCcCcCCCCcC
Confidence 555666666666644222 1222 11223343 45674 6999999999999999999995
No 7
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=2.5e-42 Score=376.10 Aligned_cols=425 Identities=18% Similarity=0.238 Sum_probs=284.5
Q ss_pred eecc--hhhhHhhhccCccCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCC
Q 008291 93 LNFD--EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQ 170 (571)
Q Consensus 93 v~~~--~~~~~~~d~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~ 170 (571)
+.++ ....+..|++ .+...|.+|+.|+|++||+++|++|++ +++||++||+|||+.|++.+.+||+|||++||
T Consensus 11 ~~~~~~~~~~~~~d~~-~~~~~p~~v~~p~s~~eV~~iv~~a~~----~~~~v~prG~gts~~g~~~~~~gvvl~l~~mn 85 (459)
T COG0277 11 VLTDPADRAAYRTDAS-VYRGLPLAVVFPKSEEEVAAILRLANE----NGIPVVPRGGGTSLSGGAVPDGGVVLDLSRLN 85 (459)
T ss_pred eecCHHHHhhccCCcc-hhcCCCCEEEccCCHHHHHHHHHHHHH----cCCeEEEECCCCCccccccCCCcEEEEchhhc
Confidence 5555 5667888888 678899999999999999999999999 99999999999999999877459999999999
Q ss_pred CCeEEEeCCcceEEEEcCCCcHHHHHHHHHhCCCccC-CCCCCCceeecccccCCccCCCcccccCccccEEEEEEEecC
Q 008291 171 GPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPK-SWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGK 249 (571)
Q Consensus 171 ~i~i~i~~~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~-~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~levV~~~ 249 (571)
+| +++|..+ .+|+||||+++.+|.++|.++|++++ ++++...+||||+++++++|..+.+||.+.|+|+++++|++|
T Consensus 86 ~i-~~id~~~-~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~d 163 (459)
T COG0277 86 RI-LEIDPED-GTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPD 163 (459)
T ss_pred ch-hccCcCC-CEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCC
Confidence 98 6899888 89999999999999999999999755 444444899999999999999999999999999999999999
Q ss_pred CeEEEcCCC-----CCCchhHhhhcCCCCceEEEEEEEeeeecCCceEEEEEEeCCHHHHHHHHHHHH----h---cCCc
Q 008291 250 GEIINCSEK-----QNSELFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLI----S---AEKT 317 (571)
Q Consensus 250 G~i~~~~~~-----~~~dL~~~~~Gs~G~~GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~l~----~---~~~~ 317 (571)
|++++++.+ .++||++++.||+|+|||||++|+|+.|.|+........|.+.+.+........ . .+..
T Consensus 164 G~i~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (459)
T COG0277 164 GEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEALGVIPAA 243 (459)
T ss_pred ceehhhcCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHHHHHHHHHHhhhhcCCCcee
Confidence 999999985 348999999999999999999999999999998888888888877665333322 1 1223
Q ss_pred cccccceEEeccccccccccccCCCCCccccccCCCCCCeEEEEEEeeecCCCChHHHHHHHHHHHhhcccCC---Ceee
Q 008291 318 FDYIEGFVMVNRTGLLNNWRSSFDPQDPVQASQFKSDGQTLFCLELAKYINKDEKDLVNQEVESSLSVLNYIP---STLF 394 (571)
Q Consensus 318 ~e~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~ll~~l~~~~---~~~~ 394 (571)
.++++.. +..... +... ..++......+++|. .+.....+.+....+.+.+.... ....
T Consensus 244 ~e~~~~~-~~~~~~--------~~~~-----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (459)
T COG0277 244 LEFMDRP-IKAAEA--------YLGG-----GALPLEAPARLLVEV----EGSDEAAVDEALEALGELLLEHGLARDLVV 305 (459)
T ss_pred eeecchh-HHHHHH--------hccc-----cCCCCCCceEEEEEE----cCCcHHHHHHHHHHHHHHHHhcCCceeEEE
Confidence 4444432 000000 0000 112322335566664 33333445555555555443222 1111
Q ss_pred ecc-chhhhhhhhhhhhHHHHHhcccccCCccceecccCcccHHHHHHHHHHhhhcccCC-ccEEEecCCCCCCCCCCCc
Q 008291 395 LSE-VSYIEFLDRVHVSEVKLRSKGLWEVPHPWLNLFIPQSKIHDFAREVFGNILAETSN-GPILIYPLNKSKWDNRTSV 472 (571)
Q Consensus 395 ~~d-v~y~~~l~~~~~~~~~~~~~~~W~~r~~~~d~~vP~s~i~~f~~~v~~~il~~~~~-g~i~~~p~~~~~~~~~~~~ 472 (571)
..+ ..+..++...... ......+.....+.|..+|.+++.+++.++. .++..... ..++.+-..
T Consensus 306 ~~~~~~~~~~~~~r~~~---~~~~~~~~~~~~~~d~~vp~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------- 371 (459)
T COG0277 306 AQDLAEAARLWLARKGA---LAAAGALGPGVIQEDVVVPLEALPEFLREIL-ALLDKAGLALRVALFGHA---------- 371 (459)
T ss_pred eCCHHHHHHHHHHHHHH---HHHHHhhCCCccccceeeeHHHHHHHHHHHH-HHHHhcCCCceeeeeccc----------
Confidence 111 1111111111000 0111111100235699999999999999874 44432221 111211110
Q ss_pred cCCCcceEEeeeecCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCceeccCCCCCHHHHHHhhc-hhHHHHHHhhhcC
Q 008291 473 VIPEEDVFYLVAFLSSAVPSSKGTDGLEHILTQNKRILEYCETARLGVKQYLPHYTTQEQWRSHFG-PQWEVFVQRKSTY 551 (571)
Q Consensus 473 ~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~G~~~~~Yl~~~~~~~~w~~~yG-~~~~~l~~lK~~y 551 (571)
++..+++.+..... ...+..+...+..+.+...+.+.|.....+--......+|...|. ..|+.|+++|+.|
T Consensus 372 --~dg~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~gG~~~~~h~~g~~~~~~~~~~~~~~~~~~~~~k~~~ 444 (459)
T COG0277 372 --GDGNLHLNILYDVG-----DEAEELARAEALNEAIEALAVELGGSISGEHGIGRTKAEFLELEPGEAWALLRAIKRAF 444 (459)
T ss_pred --CCCcceeeeccCCC-----ccHHHHHHHHHHHHHHHHHHHHhCCeeEEecccchhhHHHHHHHHhHHHHHHHHHHHhc
Confidence 01111111111100 011234555566667777666666444434333566677765554 4799999999999
Q ss_pred CCCCCCCCCCcc
Q 008291 552 DPLAILAPGQRI 563 (571)
Q Consensus 552 DP~~ifnPG~~I 563 (571)
||+||||||+.+
T Consensus 445 DP~~i~npg~~~ 456 (459)
T COG0277 445 DPNGIFNPGKLF 456 (459)
T ss_pred CCCCCCCCCccC
Confidence 999999999643
No 8
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=1.3e-41 Score=337.88 Aligned_cols=417 Identities=17% Similarity=0.246 Sum_probs=299.5
Q ss_pred ccccccCCCeeecc--hhhhHhhhccCccCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcC-C
Q 008291 83 SLKTLTLDGHLNFD--EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQA-H 159 (571)
Q Consensus 83 ~l~~~~~~g~v~~~--~~~~~~~d~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~-~ 159 (571)
.++++..+..++++ +++.+.+||...|++....|+.|+|+++|++|+++|++ .++.|+|+||.+++.|.+.+ .
T Consensus 58 ~Fk~iLg~d~~~~~~edL~~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~----~kLAVVPQGGNTgLVGgSVPvf 133 (511)
T KOG1232|consen 58 YFKSILGKDEVSTDKEDLENFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCND----RKLAVVPQGGNTGLVGGSVPVF 133 (511)
T ss_pred HHHHHhcccccccChHHHhhhhhHHHHhccCCceEEecCCCHHHHHHHHHhhcc----ccEEEecCCCCcccccCcccch
Confidence 44555555557776 89999999999999999999999999999999999999 99999999999999998888 7
Q ss_pred CcEEEEcCCCCCCeEEEeCCcceEEEEcCCCcHHHHHHHHHhCCC-ccCCCCCCCceeecccccCCccCCCcccccCccc
Q 008291 160 QGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGL-APKSWTDYLHLTVGGTLSNAGISGQAFQHGPQIS 238 (571)
Q Consensus 160 ~givIdl~~l~~i~i~i~~~~~~~v~v~aG~~~~~l~~~l~~~Gl-~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d 238 (571)
+.||++|.+||+| .++|+-. ..+++++|+.+.++..++.++|+ +|.+.++...|.|||.+++++.|-+-.|||...-
T Consensus 134 DEiVlsl~~mNKi-~sfDevs-Gil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHg 211 (511)
T KOG1232|consen 134 DEIVLSLGLMNKI-LSFDEVS-GILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHG 211 (511)
T ss_pred HHHhhhhhhhccc-ccccccc-ceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEeccccc
Confidence 8999999999999 8999887 89999999999999999999998 5999999999999999998877888999999999
Q ss_pred cEEEEEEEecCCeEEEcCC---C--CCCchhHhhhcCCCCceEEEEEEEeeeecCCceEEEEEEeCCHHHHHHHHHHHHh
Q 008291 239 NVHQLEVVTGKGEIINCSE---K--QNSELFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLIS 313 (571)
Q Consensus 239 ~v~~levV~~~G~i~~~~~---~--~~~dL~~~~~Gs~G~~GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~l~~ 313 (571)
+|+++|+|+|+|+++..-. + .++|+-+.++||+|++||||.+++-+.|.|+.+..+++..+++++..+......+
T Consensus 212 svLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi~sf~~v~k~fv~Aks 291 (511)
T KOG1232|consen 212 SVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGIESFDDVQKVFVEAKS 291 (511)
T ss_pred ceeeeEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEeecCCCcceeEEEEccccHHHHHHHHHHHHH
Confidence 9999999999999987542 2 4689999999999999999999999999999988887777777654433222111
Q ss_pred ----cCCccccccceEEeccccccccccccCCCCCccccccCCCCCCeEEEEEEeeecCCCChHHHHHHHHHHHhhcccC
Q 008291 314 ----AEKTFDYIEGFVMVNRTGLLNNWRSSFDPQDPVQASQFKSDGQTLFCLELAKYINKDEKDLVNQEVESSLSVLNYI 389 (571)
Q Consensus 314 ----~~~~~e~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~ll~~l~~~ 389 (571)
.-.++|+||...+... .++ + .. ...++..+.+-.++||. .|++.+.-+++++++++.....
T Consensus 292 ~L~EILSafElmD~~s~~~~---~~~----l-~~---l~~pl~~~~pFyiLiET----sGSn~dhD~eKl~afl~d~lek 356 (511)
T KOG1232|consen 292 NLTEILSAFELMDNASMELV---LEY----L-KD---LHFPLEDEHPFYILIET----SGSNKDHDEEKLTAFLEDCLEK 356 (511)
T ss_pred HHHHHHHHHHhhcchHHHHH---HHH----h-cc---CCCCccCCCceEEEEEe----cCCCccccHHHHHHHHHHhhhh
Confidence 1235778876543211 100 0 00 11123334555677885 4566666677788877765321
Q ss_pred CCeeeeccchhhhhhhhhhhhHHHHHhcccccCCccc------------eecccCcccHHHHHHHHHHhhh---------
Q 008291 390 PSTLFLSEVSYIEFLDRVHVSEVKLRSKGLWEVPHPW------------LNLFIPQSKIHDFAREVFGNIL--------- 448 (571)
Q Consensus 390 ~~~~~~~dv~y~~~l~~~~~~~~~~~~~~~W~~r~~~------------~d~~vP~s~i~~f~~~v~~~il--------- 448 (571)
+.. .|.+ .+.+..+...+|+.|... .|+.+|.+.+-+.++.+..++.
T Consensus 357 -~lI----------sDGv-~a~d~~~~~~lW~~Re~ip~a~~~~g~vyKyDvSLpL~d~Y~lvn~~~eRl~~~~l~~d~~ 424 (511)
T KOG1232|consen 357 -GLI----------SDGV-LAQDEAEAQKLWKIRESIPEALQKAGGVYKYDVSLPLEDLYNLVNVMKERLGEAALVGDIV 424 (511)
T ss_pred -ccc----------ccce-ecCCHHHHHHHHHHHhccHHHHHhcCCEEEeeccccHHHHHHHHHHHHHhhhhhhhhhccc
Confidence 111 1222 455666777899888631 5999999998888776533332
Q ss_pred --cccCCccEEEecCCCCCCCCCC-CccCCCcceEEeeeecCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCceeccC
Q 008291 449 --AETSNGPILIYPLNKSKWDNRT-SVVIPEEDVFYLVAFLSSAVPSSKGTDGLEHILTQNKRILEYCETARLGVKQYLP 525 (571)
Q Consensus 449 --~~~~~g~i~~~p~~~~~~~~~~-~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~G~~~~~Yl~ 525 (571)
+|-+.|.+|+--... ++.... ..+.| =+|..+...+++++.+|| .|.-+|.|+.
T Consensus 425 gyGHlGDgNlHLNia~~-efn~~iek~leP--fvYE~vs~~~GSISAEHG--------------------iG~lKk~~~~ 481 (511)
T KOG1232|consen 425 GYGHLGDGNLHLNIAVR-EFNKEIEKLLEP--FVYEWVSKHKGSISAEHG--------------------IGFLKKPYLH 481 (511)
T ss_pred ccccccCCceeEeeeHH-HHhHHHHHhhhh--HHHHHHHhcCCceecccc--------------------ccccccCccc
Confidence 111112222210000 000000 01111 012222333333332221 2344468998
Q ss_pred CCCCHHHHHHhhchhHHHHHHhhhcCCCCCCCCCCCcc
Q 008291 526 HYTTQEQWRSHFGPQWEVFVQRKSTYDPLAILAPGQRI 563 (571)
Q Consensus 526 ~~~~~~~w~~~yG~~~~~l~~lK~~yDP~~ifnPG~~I 563 (571)
|-.++++ ...|+.+|..|||++||||++-|
T Consensus 482 ysKspe~--------i~lmk~lKn~~DPngILnPYK~i 511 (511)
T KOG1232|consen 482 YSKSPEE--------ILLMKDLKNLFDPNGILNPYKYI 511 (511)
T ss_pred cCCCHHH--------HHHHHHHHhhcCCcccCCccccC
Confidence 8888887 45899999999999999999754
No 9
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=8.6e-39 Score=342.53 Aligned_cols=401 Identities=16% Similarity=0.174 Sum_probs=263.5
Q ss_pred hhccCccCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCeEEEeCCcce
Q 008291 103 RDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSF 182 (571)
Q Consensus 103 ~d~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~~i~i~i~~~~~~ 182 (571)
++|++.+...|.+|++|+|++||+++|+.|++ +|+++|+|||+.+.+.. +|++|||++||+| +++|.++ .
T Consensus 2 ~nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~-------~v~~~G~Ghs~~~~~~~-~g~~idl~~l~~i-~~~d~~~-~ 71 (419)
T TIGR01679 2 SNWSGEQVAAPSAIVRPTDEGELADVIAQAAK-------PVRAVGSGHSFTDLACT-DGTMISLTGLQGV-VDVDQPT-G 71 (419)
T ss_pred cCCCCCccCCCCeEECCCCHHHHHHHHHHhCC-------CEEEEeCCCCCCCcccC-CCEEEEhhHcCCc-eeecCCC-C
Confidence 57888788999999999999999999998864 59999999999887665 7899999999998 7999887 8
Q ss_pred EEEEcCCCcHHHHHHHHHhCCCccCCCCCCCceeecccccCCccCCCcccccCccccEEEEEEEecCCeEEEcCCCCCCc
Q 008291 183 YVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSE 262 (571)
Q Consensus 183 ~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~~~~~~~~d 262 (571)
+|+||||+++.+|.+.|.++|++++..++....||||+++++++|. +.+||.+.|+|++++||++||++++|++.+|+|
T Consensus 72 ~v~v~aG~~l~~l~~~L~~~G~~l~~~~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~d 150 (419)
T TIGR01679 72 LATVEAGTRLGALGPQLAQRGLGLENQGDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEGDDQD 150 (419)
T ss_pred EEEEcCCCCHHHHHHHHHHcCCccccCCCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCCCCHH
Confidence 9999999999999999999999877777777889999999877664 679999999999999999999999999999999
Q ss_pred hhHhhhcCCCCceEEEEEEEeeeecCCceEEEEEEeCCHHHHHHHHHHHHhcCCccccccceEEeccccccccccccCCC
Q 008291 263 LFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLISAEKTFDYIEGFVMVNRTGLLNNWRSSFDP 342 (571)
Q Consensus 263 L~~~~~Gs~G~~GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~vd~~~~~~~~~~~~~~~~~~~~ 342 (571)
|||+++||+|+|||||++|||++|.++.... ....+++++.+..+.+++. .+.++.+++......+ .+. .
T Consensus 151 Lf~a~~g~~G~lGVIt~vtl~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~-~~~----~ 220 (419)
T TIGR01679 151 MYLAARVSLGALGVISQVTLQTVALFRLRRR--DWRRPLAQTLERLDEFVDG---HRHFEFYVFPFAGKAL-TIT----M 220 (419)
T ss_pred HHHHHHhCCCceEEEEEEEEEeecceEeEEE--EEecCHHHHHHHHHHHHhc---CCeEEEEEecCCCeEE-EEE----C
Confidence 9999999999999999999999999876443 3456788888888887763 3344433332110000 000 0
Q ss_pred CCccccccCCCCCCeEEEEEEeeecCCCChHHHHHHHHHHHhhcccCCCeeeeccchhhhhhhhhhhhHHHHHhcccc-c
Q 008291 343 QDPVQASQFKSDGQTLFCLELAKYINKDEKDLVNQEVESSLSVLNYIPSTLFLSEVSYIEFLDRVHVSEVKLRSKGLW-E 421 (571)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~dv~y~~~l~~~~~~~~~~~~~~~W-~ 421 (571)
+... ..+ ...... + +...-..++.+...++..+.......-.+..+.. .....+-| +
T Consensus 221 ~~~~---~~~-~~~~~~-~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~r 278 (419)
T TIGR01679 221 DRSD---EQP-KPRQRD-V----------DENFLGGLRLLRQTLRRFPSLRPRLNRLMTNMMS-------SETVVDRAYK 278 (419)
T ss_pred CcCC---Ccc-cccccc-h----------hhhHHHHHHHHHHhcccCchhHHHHHHHHHhhcC-------CceeeccceE
Confidence 0000 000 000000 0 0001111111111111111110000000000000 00001111 0
Q ss_pred -------CCccceecccCcccHHHHHHHHHHhhhcccCC--ccEEEecCCCCCCCCCCCccCCCcceEEeeeecCCCCCC
Q 008291 422 -------VPHPWLNLFIPQSKIHDFAREVFGNILAETSN--GPILIYPLNKSKWDNRTSVVIPEEDVFYLVAFLSSAVPS 492 (571)
Q Consensus 422 -------~r~~~~d~~vP~s~i~~f~~~v~~~il~~~~~--g~i~~~p~~~~~~~~~~~~~~p~~~~~~~v~~l~~~~~~ 492 (571)
.+..-...+||.++..+.++++.+.|..+... .|+.++-.... +.-.+..++.+..+..+-.+..
T Consensus 279 ~~~~~~~~~f~q~e~~iP~~~~~~al~~i~~~i~~~~~~~~~pve~R~~~ad--~~~LS~~~~r~~~~ia~~~~~~---- 352 (419)
T TIGR01679 279 VFATQRKVRFNEMEYHLPRENGRKALQEVIDLVERRSPPVMFPIEVRFSAPD--DSWLSPFYGRPTCSIAVHQYAG---- 352 (419)
T ss_pred EecccccceeeEEEEecchhHHHHHHHHHHHHHHhcCCCccceEEEEEecCC--CcccCCCCCCCcEEEEEEEcCC----
Confidence 11123479999999999999986545443222 46666544322 1222334444444433433221
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCCceeccCCCCCHHHHHHhhchhHHHHHHhhhcCCCCCCCCCC
Q 008291 493 SKGTDGLEHILTQNKRILEYCETARLGVKQYLPHYTTQEQWRSHFGPQWEVFVQRKSTYDPLAILAPG 560 (571)
Q Consensus 493 ~~~~~~~~~~~~~~r~i~~~~~~~G~~~~~Yl~~~~~~~~w~~~yG~~~~~l~~lK~~yDP~~ifnPG 560 (571)
...+.+.+..+++ +.+.|..++--=.|..+++++++.| ++|++|+++|++|||+++|...
T Consensus 353 ----~~~~~~~~~~e~i---~~~~gGRpHwgK~~~l~~~~l~~~Y-P~~~~F~~~r~~~DP~g~F~n~ 412 (419)
T TIGR01679 353 ----MDFESYFRAVEPI---FRRYAGRPHWGKRHYLTAATLRERY-PRWDDFAAVRDDLDPDRRFLNP 412 (419)
T ss_pred ----CCHHHHHHHHHHH---HHHcCCCCCchhccCCCHHHHHHHC-cCHHHHHHHHHHhCCCCccCCH
Confidence 1234444444444 4456655532223457889999999 5899999999999999999753
No 10
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=5.8e-38 Score=336.50 Aligned_cols=410 Identities=16% Similarity=0.219 Sum_probs=268.4
Q ss_pred hhhccCccCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCeEEEeCCcc
Q 008291 102 ARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENS 181 (571)
Q Consensus 102 ~~d~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~~i~i~i~~~~~ 181 (571)
.++|++.+...|.+|+.|+|++||+++|+.|++ ++++|+++|+|||+++.+.. +|++|||++||++ +++|+++
T Consensus 4 w~nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~----~~~~v~v~G~GhS~s~~~~~-~gvvIdl~~l~~i-~~id~~~- 76 (438)
T TIGR01678 4 FQNWAKTYSASPEVYYQPTSVEEVREVLALARE----QKKKVKVVGGGHSPSDIACT-DGFLIHLDKMNKV-LQFDKEK- 76 (438)
T ss_pred EEeCCCcccCCCCEEEecCCHHHHHHHHHHHHH----CCCeEEEECCCCCCCCCccC-CeEEEEhhhcCCc-eEEcCCC-
Confidence 468888889999999999999999999999999 99999999999999887765 7999999999998 8999887
Q ss_pred eEEEEcCCCcHHHHHHHHHhCCCccCCCCCCCceeecccccCCccCCCcccccCccccEEEEEEEecCCeEEEcCCCCCC
Q 008291 182 FYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNS 261 (571)
Q Consensus 182 ~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~~~~~~~~ 261 (571)
.+|+|+||+++.+|.+.|.++|++++..++.+.+||||+++++++| .+.+||.++|+|+++++|+++|++++|++++++
T Consensus 77 ~~vtV~aG~~l~~L~~~L~~~Gl~l~~~g~~~~~TvGG~iatg~hG-~~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~ 155 (438)
T TIGR01678 77 KQITVEAGIRLYQLHEQLDEHGYSMSNLGSISEVSVAGIISTGTHG-SSIKHGILATQVVALTIMTADGEVLECSEERNA 155 (438)
T ss_pred CEEEEcCCCCHHHHHHHHHHcCCEecCCCCCCCceeeehhcCCCCC-CccccCcHHhhEEEEEEEcCCCcEEEeCCCCCh
Confidence 8999999999999999999999987777787889999999887766 578999999999999999999999999999999
Q ss_pred chhHhhhcCCCCceEEEEEEEeeeecCCceEEEEEEeCCHHHHHHHHHHHHhcCCccccccceEEeccccccccccccCC
Q 008291 262 ELFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLISAEKTFDYIEGFVMVNRTGLLNNWRSSFD 341 (571)
Q Consensus 262 dL~~~~~Gs~G~~GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~vd~~~~~~~~~~~~~~~~~~~ 341 (571)
||||+.+||+|+|||||++||+++|.+..... ....+++++.+..+.+.+ ..++++-+.+...... ..|+....
T Consensus 156 dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~w~p~~~~~-~~~~~~~~ 229 (438)
T TIGR01678 156 DVFQAARVSLGCLGIIVTVTIQVVPQFHLQET--SFVSTLKELLDNWDSHWK---SSEFFRVLWFPYTENV-VIWRQNKT 229 (438)
T ss_pred hHHHHHhcCCCceEeeEEEEEEEEeccceEEE--EecCCHHHHHHHHHHHhh---cCCeEEEEEEcCCCcE-EEEECccC
Confidence 99999999999999999999999999876544 355678888777666544 2455555444211110 01111100
Q ss_pred CCCccccccCCCCCCeEEEEEEeeecCCCChHHHHHH-HHHHHhhcccCCCeeeeccchhh-hhhhhh------------
Q 008291 342 PQDPVQASQFKSDGQTLFCLELAKYINKDEKDLVNQE-VESSLSVLNYIPSTLFLSEVSYI-EFLDRV------------ 407 (571)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~-l~~ll~~l~~~~~~~~~~dv~y~-~~l~~~------------ 407 (571)
+. + +...... +.+ ..+... .+.+....+..+. -.++. .+..+.
T Consensus 230 ~~-~------~~~~~~~--------~~~---~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 286 (438)
T TIGR01678 230 NK-A------PSSPSNS--------FWD---YKLGFFLYEFLLWTSKYLPC-----LTPWIERFFFWMLYGEKSSTKKES 286 (438)
T ss_pred CC-C------cccccch--------hhh---hhHHHHHHHHHHHHHhhccc-----ccHHHHHHHHHhhcCCccCCCcce
Confidence 00 0 0000000 111 011111 1111111111111 01110 000000
Q ss_pred -hhhHHHHHhcccccCCccceecccCcccHHHHHHHHHHhhhc-ccC-----C-ccEEEecCCCCCCCCC-CCccCCCcc
Q 008291 408 -HVSEVKLRSKGLWEVPHPWLNLFIPQSKIHDFAREVFGNILA-ETS-----N-GPILIYPLNKSKWDNR-TSVVIPEED 478 (571)
Q Consensus 408 -~~~~~~~~~~~~W~~r~~~~d~~vP~s~i~~f~~~v~~~il~-~~~-----~-g~i~~~p~~~~~~~~~-~~~~~p~~~ 478 (571)
..+....+....|+- -..+.+||.++..+.++++. +++. +.. . .|+-++-......++. .+.+.-.+.
T Consensus 287 ~~~s~~~~~~~~~f~~--~~~Ey~vP~~~~~~al~~l~-~~~~~~~~~~~~~v~fpiEvR~~~~~~~Dd~wLSp~~~rds 363 (438)
T TIGR01678 287 SNLSHKIFTMECRFSQ--HVQEWGIPREKTKEALLELK-AMLEAHAKNKEVYAHYPVEVRFTRGTLPDECLLSPCFQVDT 363 (438)
T ss_pred ecchHHhhcccceeeh--hceeecccHHHHHHHHHHHH-HHHHhcccccCceEeeeEEEEEeCCCCCCceecCCCCCCce
Confidence 000011111111110 12479999999999999985 4543 211 1 3555554433111111 112222244
Q ss_pred eEEeeeecCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCceeccCCC-CCHHHHHHhhchhHHHHHHhhhcCCCCCCC
Q 008291 479 VFYLVAFLSSAVPSSKGTDGLEHILTQNKRILEYCETARLGVKQYLPHY-TTQEQWRSHFGPQWEVFVQRKSTYDPLAIL 557 (571)
Q Consensus 479 ~~~~v~~l~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~G~~~~~Yl~~~-~~~~~w~~~yG~~~~~l~~lK~~yDP~~if 557 (571)
++..+..+..... + ...+.+.+. +++...+.|..++-==.|. .+.+++.+.| ++|++|+++++++||+|+|
T Consensus 364 ~~i~~~~y~~~~~---~-~~~~~~f~~---~E~i~~~~gGRPHWgK~h~~~~~~~l~~~Y-P~~~~F~~vr~~~DP~g~F 435 (438)
T TIGR01678 364 CYINAIMYRPFGK---D-VPRLDYFLA---YETIMKKFGGKPHWAKAHNVCKQKDFEEMY-PTLHKFCDIRKKLDPTGVF 435 (438)
T ss_pred EEEEEEEccCCCC---C-CCHHHHHHH---HHHHHHHcCCCCCchhcccccCHHHHHHHC-cCHHHHHHHHHhhCccccc
Confidence 4555544443211 1 123344444 4444445675654111223 5778999999 9999999999999999999
Q ss_pred CC
Q 008291 558 AP 559 (571)
Q Consensus 558 nP 559 (571)
..
T Consensus 436 ~N 437 (438)
T TIGR01678 436 LN 437 (438)
T ss_pred CC
Confidence 63
No 11
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=2e-37 Score=334.32 Aligned_cols=204 Identities=17% Similarity=0.304 Sum_probs=186.1
Q ss_pred HhhhccCccCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCeEEEeCCc
Q 008291 101 AARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAEN 180 (571)
Q Consensus 101 ~~~d~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~~i~i~i~~~~ 180 (571)
..++|++...+.|..+++|+|++||+++|+.|++ ++.+|+++|+|||+.+.+.+. |.+|||++||+| +++|.++
T Consensus 50 ~w~NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~----~g~~Vr~~GsGhS~sg~a~t~-g~lldL~~ln~V-l~vD~~~ 123 (541)
T TIGR01676 50 TVSNWSGTHEVLTRTFHQPEAIEELEGIVKQANE----KKARIRPVGSGLSPNGIGLSR-AGMVNLALMDKV-LEVDEEK 123 (541)
T ss_pred cccccCCccccCcceEECCCCHHHHHHHHHHHHH----cCCcEEEECCCcCCCCcccCC-CeEEEhhhCCCC-EEEcCCC
Confidence 3579999889999999999999999999999999 999999999999999988874 557999999998 8999988
Q ss_pred ceEEEEcCCCcHHHHHHHHHhCCCccCCCCCCCceeecccccCCccCCCcccccCccccEEEEEEEecCCeEEEcCCCCC
Q 008291 181 SFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQN 260 (571)
Q Consensus 181 ~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~~~~~~~ 260 (571)
++|+|+||+++.+|.++|.++|++++..++...+||||+++++++|. +.+||.++|+|+++++|+++|++++|++.+|
T Consensus 124 -~tVtV~AG~~l~~L~~~L~~~Glal~n~gsi~~~TIGGaiatgtHGt-g~~~G~l~d~V~~l~lVta~G~vv~~s~~~~ 201 (541)
T TIGR01676 124 -KRVRVQAGIRVQQLVDAIKEYGITLQNFASIREQQIGGIIQVGAHGT-GAKLPPIDEQVIAMKLVTPAKGTIEISKDKD 201 (541)
T ss_pred -CEEEEcCCCCHHHHHHHHHHcCCEeccCCCCCCceEccccccCCcCC-CCCCCCHHHhEEEEEEEECCCCEEEECCCCC
Confidence 89999999999999999999999988888888999999999988665 5689999999999999999999999999999
Q ss_pred CchhHhhhcCCCCceEEEEEEEeeeecCCceEEEEEEeCCHHHHHHHHHHHHhc
Q 008291 261 SELFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLISA 314 (571)
Q Consensus 261 ~dL~~~~~Gs~G~~GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (571)
+|||||++||+|+|||||++||+++|++..+.... -.+++++.+..+.+++.
T Consensus 202 pdLF~AargslG~LGVItevTLr~~Pa~~l~~~~~--~~~~~e~l~~~~~~~~~ 253 (541)
T TIGR01676 202 PELFFLARCGLGGLGVVAEVTLQCVERQELVEHTF--ISNMKDIKKNHKKFLAD 253 (541)
T ss_pred HHHHHHHhcCCCceEeEEEEEEEEEeccceeEEEE--ecCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998754433 25788888888887653
No 12
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=1.5e-37 Score=339.90 Aligned_cols=208 Identities=20% Similarity=0.213 Sum_probs=182.5
Q ss_pred hhhHhhhccCccCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEc-CCCCCCCCCcCC---CcEEEEcCCCCCCe
Q 008291 98 VHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARG-HGHSLQGQAQAH---QGVVINMESLQGPK 173 (571)
Q Consensus 98 ~~~~~~d~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg-~G~s~~g~~~~~---~givIdl~~l~~i~ 173 (571)
+.++.++|++.+...|.+|++|+|++||+++|++|++ +++||+++| +||++.+.+... +|++|||++||+|
T Consensus 17 ~~~~w~nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~----~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~i- 91 (557)
T TIGR01677 17 VSNAYGAFPDRSTCRAANVAYPKTEAELVSVVAAATA----AGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHV- 91 (557)
T ss_pred eecchhhcCCcccCCCCEEEecCCHHHHHHHHHHHHH----CCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCC-
Confidence 4456789999999999999999999999999999999 999999996 699988765542 4699999999998
Q ss_pred EEEeCCcceEEEEcCCCcHHHHHHHHHhCCCccCCCCCCCceeecccccCCccCCCc-ccccCccccEEEEEEEecCC--
Q 008291 174 MQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQA-FQHGPQISNVHQLEVVTGKG-- 250 (571)
Q Consensus 174 i~i~~~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~~~g~g~~~-~~~G~~~d~v~~levV~~~G-- 250 (571)
+++|.++ .+|+|+||+++.+|.+.|.++|++++..++...+||||+++++++|... .+||.+.|+|++++||+++|
T Consensus 92 l~iD~~~-~tVtV~AG~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a 170 (557)
T TIGR01677 92 VAVDATA-MTVTVESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAA 170 (557)
T ss_pred EEEeCCC-CEEEECCCCcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcc
Confidence 8999888 8999999999999999999999987777777789999999988877655 48899999999999999998
Q ss_pred ----eEEEcCCCCCCchhHhhhcCCCCceEEEEEEEeeeecCCceEEEEEEeCCHHHHHHHHHHHHh
Q 008291 251 ----EIINCSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLIS 313 (571)
Q Consensus 251 ----~i~~~~~~~~~dL~~~~~Gs~G~~GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~l~~ 313 (571)
+++++++.+|+||||+++||+|+|||||++|||++|.+... ....+...+...+..+.+.+
T Consensus 171 ~G~~~v~~~s~~~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~~--~~~~~~~~~~l~~~~~~~~~ 235 (557)
T TIGR01677 171 EGFAKVRILSEGDTPNEFNAAKVSLGVLGVISQVTLALQPMFKRS--VTYTMRDDSDFEDQFVTFGK 235 (557)
T ss_pred cCcceEEEeCCCCCHHHHHhhccCCCccEeeeEEEEEEEccccce--EEEEcCCHHHHHHHHHHhhc
Confidence 89999999999999999999999999999999999998743 33456677776665666543
No 13
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=100.00 E-value=7.9e-34 Score=308.86 Aligned_cols=205 Identities=19% Similarity=0.299 Sum_probs=183.5
Q ss_pred hhHhhhccCccCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCeEEEeC
Q 008291 99 HNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYA 178 (571)
Q Consensus 99 ~~~~~d~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~~i~i~i~~ 178 (571)
....++|++...+.|.+++.|+|++||+++|+.|++ ++++|+++|+|||+.+.+..+ +.+|||++||+| +++|.
T Consensus 83 ~~~~~NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~----~g~~VrvvGsGhS~~~l~~td-~glIdL~~l~~I-l~vD~ 156 (573)
T PLN02465 83 LHTVSNWSGTHEVQTRRYHQPESLEELEDIVKEAHE----KGRRIRPVGSGLSPNGLAFSR-EGMVNLALMDKV-LEVDK 156 (573)
T ss_pred chhccccccccCCCCCEEEEeCCHHHHHHHHHHHHH----cCCcEEEEcCCcCCCCeeeCC-CEEEECcCCCCc-EEEeC
Confidence 345679999899999999999999999999999999 999999999999999888874 456899999998 89998
Q ss_pred CcceEEEEcCCCcHHHHHHHHHhCCCccCCCCCCCceeecccccCCccCCCcccccCccccEEEEEEEecCCeEEEcCCC
Q 008291 179 ENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEK 258 (571)
Q Consensus 179 ~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~~~~~ 258 (571)
++ .+|+|+||+++.+|.+.|.++|+++...++....||||++++++ +|.+.++|.+.|+|+++++|+++|++++|++.
T Consensus 157 e~-~~VtV~AG~~l~~L~~~L~~~GLal~n~g~I~~~TIGGaIstGt-HGtG~~~g~i~d~V~~l~lVta~G~vv~~s~~ 234 (573)
T PLN02465 157 EK-KRVTVQAGARVQQVVEALRPHGLTLQNYASIREQQIGGFIQVGA-HGTGARIPPIDEQVVSMKLVTPAKGTIELSKE 234 (573)
T ss_pred CC-CEEEEccCCCHHHHHHHHHHcCCEeccCCCCCCeeecchhhCCC-CCcCCCcCcHhheEEEEEEEECCCCEEEECCC
Confidence 88 89999999999999999999999988888878899999998765 55567899999999999999999999999999
Q ss_pred CCCchhHhhhcCCCCceEEEEEEEeeeecCCceEEEEEEeCCHHHHHHHHHHHHh
Q 008291 259 QNSELFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLIS 313 (571)
Q Consensus 259 ~~~dL~~~~~Gs~G~~GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~l~~ 313 (571)
+++|||++.++++|+|||||++||+++|.++..... ...+++++.+..+.+++
T Consensus 235 ~~pdLF~aar~glG~lGVIteVTLql~P~~~L~~~~--~~~~~~~~~~~~~~~~~ 287 (573)
T PLN02465 235 DDPELFRLARCGLGGLGVVAEVTLQCVPAHRLVEHT--FVSNRKEIKKNHKKWLS 287 (573)
T ss_pred CCHHHHhHhhccCCCCcEEEEEEEEEEecCceEEEE--EEecHHHHHHHHHHHHH
Confidence 999999999999999999999999999999864332 33567788888887765
No 14
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=100.00 E-value=8.6e-36 Score=309.34 Aligned_cols=183 Identities=16% Similarity=0.220 Sum_probs=156.9
Q ss_pred CHHHHHHHHHHHHHhCCCCCcEEEEEcCCCC-CCCCCcCCCcEEEEcCCCCCCeEEEeCCcceEEEEcCCCcHHHHHHHH
Q 008291 121 SVSDIATTVKHIWEMGSHSELTVAARGHGHS-LQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHES 199 (571)
Q Consensus 121 s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s-~~g~~~~~~givIdl~~l~~i~i~i~~~~~~~v~v~aG~~~~~l~~~l 199 (571)
.++||+++|++|++ +++||++||+||+ ..|.. .++++|||++||+| +++|+++ .+|+|+||+++.+|.++|
T Consensus 3 ~~~ev~~~v~~A~~----~~~~v~~~GgGt~~~~g~~--~~~~vldl~~ln~I-le~d~~~-~~vtV~AG~~l~el~~~L 74 (352)
T PRK11282 3 ISAALLERVRQAAA----DGTPLRIRGGGSKDFYGRA--LAGEVLDTRAHRGI-VSYDPTE-LVITARAGTPLAELEAAL 74 (352)
T ss_pred hHHHHHHHHHHHHH----CCCeEEEECCCCCCCCCCC--CCCeEEEcccCCCc-EEEcCCC-CEEEECCCCCHHHHHHHH
Confidence 47999999999999 9999999999974 55653 25789999999998 8999988 899999999999999999
Q ss_pred HhCCCc-cCCCCCCC-ceeecccccCCccCCCcccccCccccEEEEEEEecCCeEEEcCCC-----CCCchhHhhhcCCC
Q 008291 200 VKYGLA-PKSWTDYL-HLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEK-----QNSELFHSVLGGLG 272 (571)
Q Consensus 200 ~~~Gl~-~~~~~~~~-~~tvGG~~~~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~~~~~-----~~~dL~~~~~Gs~G 272 (571)
.++|++ |..++++. .+||||+++++++|..+.+||.++|+|+++++|+++|++++++.+ .++||||+++||+|
T Consensus 75 ~~~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~G 154 (352)
T PRK11282 75 AEAGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSLG 154 (352)
T ss_pred HHcCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCCc
Confidence 999985 44444444 489999999999999999999999999999999999999999764 46899999999999
Q ss_pred CceEEEEEEEeeeecCCceEEEEEEeCCHHHHHHHHHHHH
Q 008291 273 QFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLI 312 (571)
Q Consensus 273 ~~GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~l~ 312 (571)
+|||||++|||++|.|+....+.+.++ ..++.+....+.
T Consensus 155 tLGVitevtlkl~P~p~~~~t~~~~~~-~~~a~~~~~~~~ 193 (352)
T PRK11282 155 TLGVLLEVSLKVLPRPRAELTLRLEMD-AAEALRKLNEWG 193 (352)
T ss_pred hhhhheEEEEEEEecCceEEEEEEecC-HHHHHHHHHHHh
Confidence 999999999999999998766655553 445555544443
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-32 Score=291.59 Aligned_cols=235 Identities=14% Similarity=0.135 Sum_probs=203.0
Q ss_pred cccccccCCCeeecc--hhhhHhhhccCccCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCC
Q 008291 82 YSLKTLTLDGHLNFD--EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAH 159 (571)
Q Consensus 82 ~~l~~~~~~g~v~~~--~~~~~~~d~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~ 159 (571)
.+|.++.....|.++ ....|++||.. ..+.|.+||+|+|++||+++||+|++ +++||++||||||+.|++.+.
T Consensus 7 ~~L~~IvG~~~Vltd~~~l~~Y~~D~r~-~~g~P~AVV~P~SteEVa~IVklC~e----~~vPVIPRGgGTGLtGGAvP~ 81 (564)
T PRK11183 7 NELTRIVGSSHVLTDPAKTERYRKGFRS-GQGDALAVVFPGTLLELWRVLQACVA----ADKIIIMQAANTGLTGGSTPN 81 (564)
T ss_pred HHHHHhcCcccEecCHHHHHHhccCccc-cCCCCCEEEecCCHHHHHHHHHHHHH----cCCeEEEeCCCcccccCcccC
Confidence 456666666788888 67889999875 67899999999999999999999999 999999999999999998874
Q ss_pred C------cEEEEcCCCCCCeEEEeCCcceEEEEcCCCcHHHHHHHHHhCCCccCCC--CCCCceeecccccCCccCCCcc
Q 008291 160 Q------GVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSW--TDYLHLTVGGTLSNAGISGQAF 231 (571)
Q Consensus 160 ~------givIdl~~l~~i~i~i~~~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~--~~~~~~tvGG~~~~~g~g~~~~ 231 (571)
+ +|+|||++||+| +++|. + .+|+|+||+++.+|.++|.++|+.|++. ++...+||||+|+||+.|....
T Consensus 82 ~~~~dR~gVVIsl~RMNrI-leID~-~-~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vl 158 (564)
T PRK11183 82 GNDYDRDIVIISTLRLDKI-QLLNN-G-KQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQ 158 (564)
T ss_pred CCCCcCCEEEEEhhHcCCc-EEECC-C-CeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhhe
Confidence 2 799999999999 88885 4 6899999999999999999999986663 4434679999999888788999
Q ss_pred cccCccccEEEEEEEecCCeE-------EEcCCC----------CC----------------------------------
Q 008291 232 QHGPQISNVHQLEVVTGKGEI-------INCSEK----------QN---------------------------------- 260 (571)
Q Consensus 232 ~~G~~~d~v~~levV~~~G~i-------~~~~~~----------~~---------------------------------- 260 (571)
+||.+.++++. ++|+++|++ +..+.. .+
T Consensus 159 Rgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfn 237 (564)
T PRK11183 159 RGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFN 237 (564)
T ss_pred Ecchhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCccccc
Confidence 99999999999 999999999 443321 12
Q ss_pred CchhHhh--hcCCCCceEEEEEEEeeeecCCceEEEEEEeCCHHHHHHHHHHHHhc----CCccccccceEE
Q 008291 261 SELFHSV--LGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLISA----EKTFDYIEGFVM 326 (571)
Q Consensus 261 ~dL~~~~--~Gs~G~~GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~e~vd~~~~ 326 (571)
.|+..++ .||+|++||| ++++++.|+|+.++.+.+.|++.+++++....+++. |.+.|||+...+
T Consensus 238 aDl~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il~~~~~lP~a~Eym~r~~~ 308 (564)
T PRK11183 238 ADPRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHILANFKNLPVAGEYMHRDAF 308 (564)
T ss_pred CCHHHHhhccCCCceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHHHHhCCCCceeEeecCHHHH
Confidence 3888899 9999999999 999999999999999999999999999999998863 567888887554
No 16
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.97 E-value=7.3e-29 Score=247.41 Aligned_cols=420 Identities=18% Similarity=0.289 Sum_probs=271.2
Q ss_pred ccCccCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCC-CcCC--C--cEEEEcCCCCCCeEEEeCC
Q 008291 105 FGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQ-AQAH--Q--GVVINMESLQGPKMQVYAE 179 (571)
Q Consensus 105 ~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~-~~~~--~--givIdl~~l~~i~i~i~~~ 179 (571)
|-+.+...|..||.|++.+||.++|+.|.+ +++-+.|.|||+|.++. ..+. . -|.+||+.||+| +.+|.+
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~k----hN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnri-LWidre 227 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMK----HNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRI-LWIDRE 227 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhh----cCeEEEEeCCcccccccccCCcccceeEEEecHHhhhhe-eEeccc
Confidence 445678899999999999999999999999 99999999999998854 4442 1 256789999999 999999
Q ss_pred cceEEEEcCCCcHHHHHHHHHhCCCc-cCCCCCCCceeecccccCCccCCCcccccCccccEEEEEEEecCCeEEE-cCC
Q 008291 180 NSFYVDVSGGELWINILHESVKYGLA-PKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIIN-CSE 257 (571)
Q Consensus 180 ~~~~v~v~aG~~~~~l~~~l~~~Gl~-~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~-~~~ 257 (571)
+ .++.+|+|+.-++|.+.|.+.|+. ...+.++...|+||++++.+.|+.-.+||.+-|-|+.+++|++.|.+-+ |..
T Consensus 228 N-LT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~ 306 (613)
T KOG1233|consen 228 N-LTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQV 306 (613)
T ss_pred c-ceEEEecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcC
Confidence 9 999999999999999999999995 3444455678999999999999999999999999999999999998754 433
Q ss_pred ---CCCCchhHhhhcCCCCceEEEEEEEeeeecCCceEEEEEEeCCHHHHHHHHHHHHh---cCCccccccceEEecccc
Q 008291 258 ---KQNSELFHSVLGGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLIS---AEKTFDYIEGFVMVNRTG 331 (571)
Q Consensus 258 ---~~~~dL~~~~~Gs~G~~GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~e~vd~~~~~~~~~ 331 (571)
..+||+-+-++||+||+|||||+|+|+.|.|+..+...+.|++++.-....+++.. .|+.+.+||+-.++-...
T Consensus 307 PRmS~GPDihh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~aFPNFEqGV~f~REvA~qRCqPAS~RLMDN~QF~fGqA 386 (613)
T KOG1233|consen 307 PRMSSGPDIHHIILGSEGTLGVITEVTIKIRPIPEVKRYGSFAFPNFEQGVNFFREVAIQRCQPASLRLMDNDQFVFGQA 386 (613)
T ss_pred CcccCCCCcceEEeccCcceeEEEEEEEEEeechhhhhcCccccCcHHHHHHHHHHHHHHhcCchheeeecccceecccc
Confidence 26899999999999999999999999999999999999999999987777766543 367788888876653322
Q ss_pred cc---ccccccCCCCC-ccccccCCC-CCCeEEEEEEeeecCCCChHHHHHHHHHHHhhcccCCCee-----------ee
Q 008291 332 LL---NNWRSSFDPQD-PVQASQFKS-DGQTLFCLELAKYINKDEKDLVNQEVESSLSVLNYIPSTL-----------FL 395 (571)
Q Consensus 332 ~~---~~~~~~~~~~~-~~~~~~~~~-~~~~~~~le~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~-----------~~ 395 (571)
+. ..|..++.... ..-+..+.. +... +|. .+..|+ ++.+++++.-+.+-+......|.. .+
T Consensus 387 LKp~~~Swwas~~d~~kk~YiTswKGfd~nq-ica-ATllfE-Gdre~V~qhE~~~y~iAekF~G~~aG~~NGqrGY~LT 463 (613)
T KOG1233|consen 387 LKPASDSWWASLKDSVKKMYITSWKGFDVNQ-ICA-ATLLFE-GDREEVDQHEERLYKIAEKFHGVVAGAENGQRGYRLT 463 (613)
T ss_pred cCcchhhHHHHHHHHHhhheeecccCcCHhh-hhh-hhheec-ccHHHHHHHHHHHHHHHHHhCCccccccccccceEEE
Confidence 21 11211100000 000000000 0000 111 111244 355666654333333322222221 11
Q ss_pred ccchhhhhhhhhhhhHHHHHhcccccCCccceecccCcccHHHHHHHHHHhhhc----ccCCccEEE-ecCCCCCCCCCC
Q 008291 396 SEVSYIEFLDRVHVSEVKLRSKGLWEVPHPWLNLFIPQSKIHDFAREVFGNILA----ETSNGPILI-YPLNKSKWDNRT 470 (571)
Q Consensus 396 ~dv~y~~~l~~~~~~~~~~~~~~~W~~r~~~~d~~vP~s~i~~f~~~v~~~il~----~~~~g~i~~-~p~~~~~~~~~~ 470 (571)
.-+.|..=+.-. .+ +-....+..||.++.....+-|...+.. .+-.++.+- |-+-. .++.
T Consensus 464 fvIAYiRDlgl~---------~g---vlgESFETSvPWDrv~~LCRnVKer~~rEck~~gv~~~~~s~CRVTQ-tYDA-- 528 (613)
T KOG1233|consen 464 FVIAYIRDLGLN---------HG---VLGESFETSVPWDRVLSLCRNVKERMKRECKAQGVTHPVLSNCRVTQ-TYDA-- 528 (613)
T ss_pred EeHHHHHhhccc---------cc---chhhcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCcccccceeEEE-EecC--
Confidence 112222211100 00 0011247889999999988877434432 233344333 21111 1110
Q ss_pred CccCCCcceEEeeeecCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCceeccCCCCC----HHHHHH-hhch-hHHHH
Q 008291 471 SVVIPEEDVFYLVAFLSSAVPSSKGTDGLEHILTQNKRILEYCETARLGVKQYLPHYTT----QEQWRS-HFGP-QWEVF 544 (571)
Q Consensus 471 ~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~G~~~~~Yl~~~~~----~~~w~~-~yG~-~~~~l 544 (571)
-.-+|+.+++-.....+ ..+..+.+....|+-+-.| | | -+.|+.. +.+|.. .-|. -...+
T Consensus 529 -----GACiYFYFgFn~rg~~d--plevfe~iE~aARdEIlac---G-G---SlSHHHGVGKiRkqW~~~~~~~vG~~ll 594 (613)
T KOG1233|consen 529 -----GACIYFYFGFNARGLKD--PLEVFERIETAARDEILAC---G-G---SLSHHHGVGKIRKQWMLTTNGAVGIALL 594 (613)
T ss_pred -----ceEEEEEEeeccccCCc--hHHHHHHHHHHhHHHHHhc---C-C---cccccccchHHHHHHHHhhhhhHhHHHH
Confidence 02345555554333221 1145555555555444433 2 1 2444333 356643 2343 57899
Q ss_pred HHhhhcCCCCCCCCCCCc
Q 008291 545 VQRKSTYDPLAILAPGQR 562 (571)
Q Consensus 545 ~~lK~~yDP~~ifnPG~~ 562 (571)
.++|...||.|||.-+..
T Consensus 595 ka~K~~lDP~NIFa~~NL 612 (613)
T KOG1233|consen 595 KAIKSELDPANIFASANL 612 (613)
T ss_pred HHHHHhcChhhhcccccc
Confidence 999999999999987753
No 17
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.96 E-value=3.7e-26 Score=233.54 Aligned_cols=209 Identities=19% Similarity=0.251 Sum_probs=175.7
Q ss_pred cCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCeEEEeCCcceEEEEcC
Q 008291 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSG 188 (571)
Q Consensus 109 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~~i~i~i~~~~~~~v~v~a 188 (571)
..++++-|-+|+|++|+.++|+.|++ ++.++++.|.|||..+.... +|.+|++.+||++ +++|++. .+||||+
T Consensus 46 ~~c~aanv~yP~teaeL~~lVa~A~~----a~~kirvVg~gHSp~~l~ct-dg~lisl~~lnkV-v~~dpe~-~tvTV~a 118 (518)
T KOG4730|consen 46 STCKAANVNYPKTEAELVELVAAATE----AGKKIRVVGSGHSPSKLVCT-DGLLISLDKLNKV-VEFDPEL-KTVTVQA 118 (518)
T ss_pred hhhhhcccCCCCCHHHHHHHHHHHHH----cCceEEEecccCCCCcceec-cccEEEhhhhccc-eeeCchh-ceEEecc
Confidence 45677788999999999999999999 99999999999999999888 6799999999999 9999998 9999999
Q ss_pred CCcHHHHHHHHHhCCCccCCCCCCCceeecccccCCccCCCcccccCccccEEEEEEEecCCeEEEcCCCCCCchhHhhh
Q 008291 189 GELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVL 268 (571)
Q Consensus 189 G~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~~~~~~~~dL~~~~~ 268 (571)
|+++.+|++++.+.|++.+..++....+|||++++++||.+..-|+.......-..++.++|.++.++++.+||+|.|.+
T Consensus 119 GirlrQLie~~~~~GlsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~AAk 198 (518)
T KOG4730|consen 119 GIRLRQLIEELAKLGLSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNAAK 198 (518)
T ss_pred CcCHHHHHHHHHhcCccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhhhh
Confidence 99999999999999999888888888999999999886665554666666666666677899999999999999999999
Q ss_pred cCCCCceEEEEEEEeeeecCCceEEEEEEeCCHHHHHHHHH-HHHhcCCccccccceEEecc
Q 008291 269 GGLGQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQE-YLISAEKTFDYIEGFVMVNR 329 (571)
Q Consensus 269 Gs~G~~GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~e~vd~~~~~~~ 329 (571)
.|+|.+|||.++||+++|..+.+... ...+..+..++.. .+.+ ..|++|-.++...
T Consensus 199 vSLG~LGVIs~VTl~~vp~Fk~s~t~--~v~n~~dl~~d~~~~~~~---~~EF~~~~w~Py~ 255 (518)
T KOG4730|consen 199 VSLGVLGVISQVTLSVVPAFKRSLTY--VVTNDSDLFKDWKVTLGE---SHEFVDVLWYPYT 255 (518)
T ss_pred hcccceeEEEEEEEEEEecceeeeEE--EEechHHHHHHHHHHhcc---cccceEEEEeccC
Confidence 99999999999999999998875444 3445556455554 3433 3566665555433
No 18
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=1e-26 Score=212.34 Aligned_cols=138 Identities=33% Similarity=0.521 Sum_probs=127.3
Q ss_pred CcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCeEEEeCCcceEEEEcCCCcH
Q 008291 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSGGELW 192 (571)
Q Consensus 113 p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~~i~i~i~~~~~~~v~v~aG~~~ 192 (571)
|.+|++|+|++||+++|++|++ +++||++||+||++.+.+...++++|||++||++ +++|+++ .+|+|+||++|
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~----~~~~v~~~g~G~~~~~~~~~~~~ivi~~~~l~~i-~~id~~~-~~v~v~aG~~~ 74 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANE----NGVPVRVRGGGHSWTGQSSDEGGIVIDMSRLNKI-IEIDPEN-GTVTVGAGVTW 74 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHH----TTSEEEEESSSTTSSSTTSSTTEEEEECTTCGCE-EEEETTT-TEEEEETTSBH
T ss_pred CcEEEEeCCHHHHHHHHHHHHH----cCCcEEEEcCCCCcccccccCCcEEEeecccccc-ccccccc-eeEEEeccccc
Confidence 7899999999999999999999 9999999999999998887679999999999998 8999887 89999999999
Q ss_pred HHHHHHHHhCCCc-cCCCCCCCceeecccccCCccCCCcccccCccccEEEEEEEecCCeEEEcC
Q 008291 193 INILHESVKYGLA-PKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCS 256 (571)
Q Consensus 193 ~~l~~~l~~~Gl~-~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~~~ 256 (571)
.||.++|.++|++ +..+.+....||||+++++++|..+.+||...|+|+++++|++||++++|+
T Consensus 75 ~~l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 75 GDLYEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp HHHHHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred hhcccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 9999999999986 445666667899999999999999999999999999999999999999985
No 19
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.92 E-value=5.2e-25 Score=220.43 Aligned_cols=412 Identities=17% Similarity=0.231 Sum_probs=248.7
Q ss_pred EeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcC--CCcEEEEcCCCCCCeEEEeCCcceEEEEcCCCcHHH
Q 008291 117 LHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQA--HQGVVINMESLQGPKMQVYAENSFYVDVSGGELWIN 194 (571)
Q Consensus 117 v~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~--~~givIdl~~l~~i~i~i~~~~~~~v~v~aG~~~~~ 194 (571)
.+-+.+.+||+-++..+..++ .+.-.++|-|--+++-.-.. ...--|++..|.+| +++|.++ ++|+|||++++++
T Consensus 58 ~H~qrVkkIqkqlkew~d~s~-k~~lctaRp~Wltvs~r~~dykk~h~~v~id~l~dI-Leld~ek-mtvrvEP~Vtmgq 134 (543)
T KOG1262|consen 58 EHQQRVKKIQKQLKEWLDDSE-KKPLCTARPGWLTVSTRFFDYKKCHHQVPIDELHDI-LELDEEK-MTVRVEPLVTMGQ 134 (543)
T ss_pred HHHHHHHHHHHHHHhhccccc-cCcccccCCCeEEEEEecchhhhhcccCCHHHHhHH-Hhcchhc-ceEEecCCccHHH
Confidence 456677778877777655221 12223344332222211110 11223444445556 7888888 9999999999999
Q ss_pred HHHHHHhCCCccCCCCCCCceeecccccCCccCCCcccccCccccEEEEEEEecCCeEEEcCCC-CCCchhHhhhcCCCC
Q 008291 195 ILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEK-QNSELFHSVLGGLGQ 273 (571)
Q Consensus 195 l~~~l~~~Gl~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~~~~~-~~~dL~~~~~Gs~G~ 273 (571)
+.++|.+.|+..+..+....+||||.|.+.|+.+.|++||+..+.+.+.|||++||+++++.++ +++|||+|+..|.||
T Consensus 135 is~~lip~g~tLaV~~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSqGT 214 (543)
T KOG1262|consen 135 ISKFLIPKGYTLAVLPELDDLTVGGLINGVGIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQGT 214 (543)
T ss_pred HHHHhccCCceeeeecccccceecceeeecccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEcccccCc
Confidence 9999999999988888889999999999999999999999999999999999999999999987 789999999999999
Q ss_pred ceEEEEEEEeeeecCCceEEEEEEeCCHHHHHHHHHHHHhc---C-CccccccceEEeccccccccccccCCCCCccccc
Q 008291 274 FGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYLISA---E-KTFDYIEGFVMVNRTGLLNNWRSSFDPQDPVQAS 349 (571)
Q Consensus 274 ~GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~l~~~---~-~~~e~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (571)
+|..+.||+|+.|..+.++.-.+....+++..+-..++... + ...+|+++.++...++.+..+. |+........
T Consensus 215 lgfLVaatiriIkvK~Yvkltyip~~~l~e~c~k~~e~~~dsdkntk~~dfvE~liyn~~egviMvG~--fad~~dak~~ 292 (543)
T KOG1262|consen 215 LGFLVAATIRIIKVKKYVKLTYIPVHGLDEYCKKITELSGDSDKNTKNADFVEGLIYNKNEGVIMVGN--FADKVDAKSN 292 (543)
T ss_pred hheeeeeEEEEEeccceEEEEEEecccHHHHHHHHHhhcccccccccccchhheeeecCCccEEEEEe--ccCccccccc
Confidence 99999999999999988766655556665554443333222 1 2358999988876666654333 2221111100
Q ss_pred -cCCCCCCeE-------------------EEEEEeeecCCCChHHHHHHHHHHHh-----hcccCCCeeeeccchhhhhh
Q 008291 350 -QFKSDGQTL-------------------FCLELAKYINKDEKDLVNQEVESSLS-----VLNYIPSTLFLSEVSYIEFL 404 (571)
Q Consensus 350 -~~~~~~~~~-------------------~~le~~~~~~~~~~~~~~~~l~~ll~-----~l~~~~~~~~~~dv~y~~~l 404 (571)
.+. +-+++ -+|-+-.||...+..... +++.++. .++++-|++.+..++ |+
T Consensus 293 ~kvN-~vgwwyKpWFykHvet~lkkge~~EYIPlr~YyhRHtrsifW-e~~~iiPFGn~~~FRyllgWl~PPKia---~L 367 (543)
T KOG1262|consen 293 AKVN-DVGWWYKPWFYKHVETFLKKGEGEEYIPLRSYYHRHTRSIFW-ELEDIIPFGNNPVFRYLLGWLCPPKIA---FL 367 (543)
T ss_pred cccc-cchhhhhhHHHHHHHHHHhcCCCceeeeHHHHHHhccceeEE-eeeeeeecCCcHHHHHHHHhcCCChHH---Hh
Confidence 010 11111 111111222221111111 0111100 001111111111111 11
Q ss_pred hhhhhhHHHHHhcccccCCccceecccCcccHHHHHHHHHHhhhcccCCccEEEecCCCCCCCCC-------CCccCC--
Q 008291 405 DRVHVSEVKLRSKGLWEVPHPWLNLFIPQSKIHDFAREVFGNILAETSNGPILIYPLNKSKWDNR-------TSVVIP-- 475 (571)
Q Consensus 405 ~~~~~~~~~~~~~~~W~~r~~~~d~~vP~s~i~~f~~~v~~~il~~~~~g~i~~~p~~~~~~~~~-------~~~~~p-- 475 (571)
.... ...-..+....|..+|+.||.+.+.+-++.+.+ +....|+|+||..-.+.+.. .+...|
T Consensus 368 KaTt----~ealRkly~~~hV~QDmlvPl~kl~eald~~hk----e~evYPiwlcP~~l~~qp~~Gq~~~~p~~r~~~~~ 439 (543)
T KOG1262|consen 368 KATT----GEALRKLYFAKHVFQDMLVPLDKLKEALDTFHK----EFEVYPIWLCPFRLYSQPGQGQLRPPPKSRLVPGT 439 (543)
T ss_pred hccc----HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHh----hheeeeeeeeeeeccCCCCCceecCCccccCCCCC
Confidence 1110 001112333336678999999999998886532 33458999998765443311 122223
Q ss_pred CcceEEeeeecCCCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCceeccCCCCCHHHHHHhhchhHHHHHHhh
Q 008291 476 EEDVFYLVAFLSSAVPSSKGTDGLEHILTQNKRILEYCETARLGVKQYLPHYTTQEQWRSHFGPQWEVFVQRK 548 (571)
Q Consensus 476 ~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~G~~~~~Yl~~~~~~~~w~~~yG~~~~~l~~lK 548 (571)
...+|..++.++..-- .....--.-.+..|+++.+....++-.-+|..-|.++++++++|...+....+.|
T Consensus 440 ~~~my~DvGvYg~pg~--v~r~e~y~~~~a~RrmEkfvr~v~Gfq~~YAd~~m~eeef~eMFd~tLY~~~R~k 510 (543)
T KOG1262|consen 440 NASMYNDVGVYGTPGQ--VERREPYNPTHAMRRMEKFVRSVHGFQMLYADIYMSEEEFWEMFDGTLYNQVRLK 510 (543)
T ss_pred cceeEEecccccCCcc--ccccCCCCHHHHHHHHHHHHHHccCcceeehhhhcCHHHHHHHhhhHHHHHHHHH
Confidence 3457777887765311 0100011123556677777766554444899999999999999966554444444
No 20
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=5.4e-24 Score=218.39 Aligned_cols=180 Identities=24% Similarity=0.283 Sum_probs=146.1
Q ss_pred cCCCeeecc-hhhhHhhhccCccCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEc
Q 008291 88 TLDGHLNFD-EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINM 166 (571)
Q Consensus 88 ~~~g~v~~~-~~~~~~~d~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl 166 (571)
.+.+++..+ ++..+++- ...+.|.+++.|+|++||++++++|++ +++|+.++|+|||+.....+.+|++|+|
T Consensus 8 ~~~~~~~~~~~l~~~~t~---~igg~a~~vv~P~s~edv~~~v~~a~~----~~~p~~v~GgGsnll~~d~g~~gvvI~l 80 (298)
T PRK13905 8 ALRGRLLENEPLARYTSF---RVGGPADYLVEPADIEDLQEFLKLLKE----NNIPVTVLGNGSNLLVRDGGIRGVVIRL 80 (298)
T ss_pred cCCceeecCCCcccccee---ecCceEeEEEeCCCHHHHHHHHHHHHH----cCCCEEEEeCCceEEecCCCcceEEEEe
Confidence 345566555 55555432 356789999999999999999999999 9999999999999876655557999999
Q ss_pred CC-CCCCeEEEeCCcceEEEEcCCCcHHHHHHHHHhCCCccCCCCCCCceeeccccc-CCccCCCccccc-CccccEEEE
Q 008291 167 ES-LQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLS-NAGISGQAFQHG-PQISNVHQL 243 (571)
Q Consensus 167 ~~-l~~i~i~i~~~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~-~~g~g~~~~~~G-~~~d~v~~l 243 (571)
++ |+.+ +++. .+|+|+||++|.+|.+++.++|+....+......||||+++ |+|. || .+.|+|.++
T Consensus 81 ~~~l~~i--~~~~---~~v~v~aG~~~~~L~~~l~~~Gl~gle~~~gipGTVGGai~~NaG~------~G~~~~d~v~~v 149 (298)
T PRK13905 81 GKGLNEI--EVEG---NRITAGAGAPLIKLARFAAEAGLSGLEFAAGIPGTVGGAVFMNAGA------YGGETADVLESV 149 (298)
T ss_pred cCCcceE--EecC---CEEEEECCCcHHHHHHHHHHcCCCcchhccCCCcchhHHHHHcCCc------CceEhheeEEEE
Confidence 98 8874 5543 68999999999999999999998432222222349999998 4442 55 799999999
Q ss_pred EEEecCCeEEEcCCCCCCchhHhhhcCCCC--ceEEEEEEEeeeecC
Q 008291 244 EVVTGKGEIINCSEKQNSELFHSVLGGLGQ--FGIITRARISLEPAP 288 (571)
Q Consensus 244 evV~~~G~i~~~~~~~~~dL~~~~~Gs~G~--~GIIt~~tl~l~p~p 288 (571)
++|+++|++++++++ |++|+++++.+. +||||+++|++.|..
T Consensus 150 ~vv~~~G~~~~~~~~---e~~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 150 EVLDRDGEIKTLSNE---ELGFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred EEEeCCCCEEEEEHH---HcCCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 999999999999764 899999998755 899999999999974
No 21
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=9e-22 Score=201.80 Aligned_cols=175 Identities=17% Similarity=0.220 Sum_probs=142.9
Q ss_pred eecc-hhhhHhhhccCccCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCCC
Q 008291 93 LNFD-EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQG 171 (571)
Q Consensus 93 v~~~-~~~~~~~d~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~~ 171 (571)
+..+ .+..|+++ .+.+.|.++++|+|++||++++++|++ +++|+.++|+|||+.....+.+|++|+|++|++
T Consensus 19 ~~~~~~l~~~tt~---~igg~a~~vv~p~~~edv~~~l~~a~~----~~ip~~v~GgGSNll~~d~g~~GvvI~l~~l~~ 91 (305)
T PRK12436 19 VKQDEMLKNHTHI---KVGGKADVFVAPTNYDEIQEVIKYANK----YNIPVTFLGNGSNVIIKDGGIRGITVSLIHITG 91 (305)
T ss_pred eecCCcchhccCc---ccCceEEEEEecCCHHHHHHHHHHHHH----cCCCEEEEcCCeEEEEeCCCeeEEEEEeCCcCc
Confidence 4444 45555544 357789999999999999999999999 999999999999998555445699999988987
Q ss_pred CeEEEeCCcceEEEEcCCCcHHHHHHHHHhCCCccCCCCCCCceeecccccCCccCCCccccc-CccccEEEEEEEecCC
Q 008291 172 PKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHG-PQISNVHQLEVVTGKG 250 (571)
Q Consensus 172 i~i~i~~~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G-~~~d~v~~levV~~~G 250 (571)
++++. .+++|+||+.|.+|.+++.++|+....+.+....||||++.+++ | .|| .+.|.+.++++++++|
T Consensus 92 --i~~~~---~~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPGtVGGav~~NA-G----ayG~~~~dvl~~v~vv~~~G 161 (305)
T PRK12436 92 --VTVTG---TTIVAQCGAAIIDVSRIALDHNLTGLEFACGIPGSVGGALYMNA-G----AYGGEISFVLTEAVVMTGDG 161 (305)
T ss_pred --EEEeC---CEEEEEeCCcHHHHHHHHHHcCCccchhhcCCccchhHHHHhcC-c----cchhehheeeeEEEEEeCCC
Confidence 46654 68999999999999999999999754444444569999999443 2 267 5667777999999999
Q ss_pred eEEEcCCCCCCchhHhhhcCC--CCceEEEEEEEeeeec
Q 008291 251 EIINCSEKQNSELFHSVLGGL--GQFGIITRARISLEPA 287 (571)
Q Consensus 251 ~i~~~~~~~~~dL~~~~~Gs~--G~~GIIt~~tl~l~p~ 287 (571)
++++++++ |+.|++|.|. ....||++|+|++.+.
T Consensus 162 ~v~~~~~~---e~~f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 162 ELRTLTKE---AFEFGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred CEEEEEHH---HhcCcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 99999886 8999999984 3467999999999875
No 22
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=2.3e-21 Score=198.39 Aligned_cols=181 Identities=15% Similarity=0.154 Sum_probs=143.3
Q ss_pred cCCCeeecc-hhhhHhhhccCccCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEc
Q 008291 88 TLDGHLNFD-EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINM 166 (571)
Q Consensus 88 ~~~g~v~~~-~~~~~~~d~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl 166 (571)
.++|++..+ .+..|++- ...+.|.++++|+|++||++++++|++ +++|+.++|+|||+.....+.+|++|+|
T Consensus 13 ~~~~~~~~~~~l~~~tt~---~igg~a~~~v~p~~~edl~~~v~~a~~----~~ip~~vlGgGSNllv~d~g~~gvVI~l 85 (302)
T PRK14652 13 RVRGEVLRDAPLAPRTAV---RVGGPADLLVRPADPDALSALLRAVRE----LGVPLSILGGGANTLVADAGVRGVVLRL 85 (302)
T ss_pred hhccccccCCCcccccEe---ecCCcceEEEEcCCHHHHHHHHHHHHH----CCCcEEEEcCCcceeecCCCEeeEEEEe
Confidence 466666666 55555433 367899999999999999999999999 9999999999999874444445899999
Q ss_pred CCC-CCCeEEEeCCcceEEEEcCCCcHHHHHHHHHhCCCccCCCCCCCceeecccccCCccCCCcccccCccccEEEEEE
Q 008291 167 ESL-QGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEV 245 (571)
Q Consensus 167 ~~l-~~i~i~i~~~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~lev 245 (571)
+++ +. ++++ + .+++|+||+.|.+|.+++.++||....+......||||++..++ | .+||.+.|+|.++++
T Consensus 86 ~~~~~~--i~~~--~-~~v~v~AG~~~~~L~~~~~~~GL~GlE~l~gIPGTvGGav~mNa-G---a~ggei~d~v~~v~v 156 (302)
T PRK14652 86 PQDFPG--ESTD--G-GRLVLGAGAPISRLPARAHAHGLVGMEFLAGIPGTLGGAVAMNA-G---TKLGEMKDVVTAVEL 156 (302)
T ss_pred cCCcce--EEec--C-CEEEEECCCcHHHHHHHHHHcCCcccccccCCCcchhHHHHHcC-C---CCceEhhheEEEEEE
Confidence 874 33 4444 3 69999999999999999999999644333333459999999443 2 477999999999999
Q ss_pred EecCCeEEEcCCCCCCchhHhhhcCC-CCceEEEEEEEeeeecC
Q 008291 246 VTGKGEIINCSEKQNSELFHSVLGGL-GQFGIITRARISLEPAP 288 (571)
Q Consensus 246 V~~~G~i~~~~~~~~~dL~~~~~Gs~-G~~GIIt~~tl~l~p~p 288 (571)
|+++| +.+... .|+.|+++++. +.-||||+++|++.|..
T Consensus 157 v~~~G-~~~~~~---~e~~f~YR~s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 157 ATADG-AGFVPA---AALGYAYRTCRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred ECCCC-cEEeeh---hhcCcccceeccCCCeEEEEEEEEEecCC
Confidence 99999 555554 38999999975 33489999999999964
No 23
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=6.9e-21 Score=195.26 Aligned_cols=176 Identities=17% Similarity=0.231 Sum_probs=143.3
Q ss_pred eeecc-hhhhHhhhccCccCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCC
Q 008291 92 HLNFD-EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQ 170 (571)
Q Consensus 92 ~v~~~-~~~~~~~d~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~ 170 (571)
.+..+ ++..|++.. ..+.+.+++.|+|++||++++++|++ +++|+.++|+|||+.....+.+|++|++++|+
T Consensus 18 ~v~~~~~L~~~tt~~---iGG~A~~~v~p~~~edv~~~v~~a~~----~~ip~~vlGgGSNll~~d~g~~GvvI~l~~l~ 90 (307)
T PRK13906 18 KIKVDEPLKRYTYTK---TGGNADFYITPTKNEEVQAVVKYAYQ----NEIPVTYLGNGSNIIIREGGIRGIVISLLSLD 90 (307)
T ss_pred eeecCCccccceEcC---cCceeEEEEEcCCHHHHHHHHHHHHH----cCCCEEEEcCceeEeecCCCcceEEEEecCcc
Confidence 46666 555665552 35789999999999999999999999 99999999999998865555579999998899
Q ss_pred CCeEEEeCCcceEEEEcCCCcHHHHHHHHHhCCCccCCCCCCCceeecccccCCccCCCcccc-cCccccEEEEEEEecC
Q 008291 171 GPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQH-GPQISNVHQLEVVTGK 249 (571)
Q Consensus 171 ~i~i~i~~~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~~~g~g~~~~~~-G~~~d~v~~levV~~~ 249 (571)
++ +++. .+|+|+||+.|.+|.+++.++|+....+.+....||||++.+++ | .| |.+.|+|+++++|+++
T Consensus 91 ~i--~~~~---~~v~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPGtVGGav~mNa-G----ayGg~i~D~l~~v~vv~~~ 160 (307)
T PRK13906 91 HI--EVSD---DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMNA-G----AYGGEVKDCIDYALCVNEQ 160 (307)
T ss_pred ce--EEeC---CEEEEECCCcHHHHHHHHHHcCCccchhhcCCCccHhHHHHhhC-C----cchhhhhhheeEEEEEeCC
Confidence 85 5554 58999999999999999999999633333323349999999443 2 24 6899999999999999
Q ss_pred CeEEEcCCCCCCchhHhhhcCC--CCceEEEEEEEeeeec
Q 008291 250 GEIINCSEKQNSELFHSVLGGL--GQFGIITRARISLEPA 287 (571)
Q Consensus 250 G~i~~~~~~~~~dL~~~~~Gs~--G~~GIIt~~tl~l~p~ 287 (571)
|++++++++ |+.+++|.|. ..--||++++|++.|.
T Consensus 161 G~~~~~~~~---e~~f~YR~S~~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 161 GSLIKLTTK---ELELDYRNSIIQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred CCEEEEEHH---HccCcCCcccCCCCCEEEEEEEEEECCC
Confidence 999999876 8899999985 2235999999999874
No 24
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.81 E-value=1.2e-19 Score=184.46 Aligned_cols=158 Identities=22% Similarity=0.328 Sum_probs=135.0
Q ss_pred cCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCeEEEeCCcceEEEEcC
Q 008291 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSG 188 (571)
Q Consensus 109 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~~i~i~i~~~~~~~v~v~a 188 (571)
..+.|.++++|+|++||++++++|++ +++|++++|+|||+.+.+...+|++|++++|+++ .+++ + .+++|+|
T Consensus 9 igg~a~~~v~p~s~edl~~~l~~a~~----~~~p~~vlGgGSNll~~d~~~~gvvi~l~~~~~~--~~~~-~-~~v~v~a 80 (284)
T TIGR00179 9 IGGNARHIVCPESIEQLVNVLDNAKE----EDQPLLILGEGSNLLILDDGRGGVIINLGKGIDI--EDDE-G-EYVHVGG 80 (284)
T ss_pred cCceeeEEEEeCCHHHHHHHHHHHHH----cCCCEEEEecceEEEEccCCcCeEEEECCCCceE--EEec-C-CEEEEEc
Confidence 47789999999999999999999999 9999999999999998877778999999999774 4555 4 6899999
Q ss_pred CCcHHHHHHHHHhCCC----ccCCCCCCCceeeccccc-CCccCCCcccccCccc-cEEEEEEEecCCeEEEcCCCCCCc
Q 008291 189 GELWINILHESVKYGL----APKSWTDYLHLTVGGTLS-NAGISGQAFQHGPQIS-NVHQLEVVTGKGEIINCSEKQNSE 262 (571)
Q Consensus 189 G~~~~~l~~~l~~~Gl----~~~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~~~d-~v~~levV~~~G~i~~~~~~~~~d 262 (571)
|+.|.+|.+++.++|| +....|+ ||||++. |+| .||...+ .|+++++|+++|++++.+.+ |
T Consensus 81 G~~~~~l~~~~~~~Gl~GlE~l~giPG----tvGGai~mNAG------ayG~~i~d~l~~v~vv~~~G~~~~~~~~---~ 147 (284)
T TIGR00179 81 GENWHKLVKYALKNGLSGLEFLAGIPG----TVGGAVIMNAG------AYGVEISEVLVYATILLATGKTEWLTNE---Q 147 (284)
T ss_pred CCcHHHHHHHHHHCCCcccccCCCCCc----hHHHHHHHhcc------cchhehhheEEEEEEEeCCCCEEEEEHH---H
Confidence 9999999999999999 4545444 9999998 544 3777665 67999999999999999875 8
Q ss_pred hhHhhhcCC--CCc-eEEEEEEEeeeec
Q 008291 263 LFHSVLGGL--GQF-GIITRARISLEPA 287 (571)
Q Consensus 263 L~~~~~Gs~--G~~-GIIt~~tl~l~p~ 287 (571)
+.+++|.|. ... .||+++++++.+.
T Consensus 148 ~~f~YR~S~f~~~~~~iil~a~~~l~~~ 175 (284)
T TIGR00179 148 LGFGYRTSIFQHKYVGLVLKAEFQLTLG 175 (284)
T ss_pred ccccCCccccCCCCcEEEEEEEEEeccc
Confidence 999999985 333 6999999999543
No 25
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.80 E-value=4.9e-19 Score=184.40 Aligned_cols=177 Identities=15% Similarity=0.233 Sum_probs=141.6
Q ss_pred eecc-hhhhHhhhccCccCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCCC
Q 008291 93 LNFD-EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQG 171 (571)
Q Consensus 93 v~~~-~~~~~~~d~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~~ 171 (571)
+..+ ++..+++- ...+.|.+++.|+|++|+++++++|++ +++|+.++|+|||+.....+.+|+||+++ ++.
T Consensus 15 ~~~~~~L~~~tt~---~iGg~A~~~~~p~s~edl~~~l~~a~~----~~~p~~vlGgGSNlLv~D~g~~GvVI~l~-~~~ 86 (363)
T PRK13903 15 VAEDVPLAPLTTL---RVGGPARRLVTCTSTEELVAAVRELDA----AGEPLLVLGGGSNLVIADDGFDGTVVRVA-TRG 86 (363)
T ss_pred eeCCCCcccccEe---ecCccceEEEEeCCHHHHHHHHHHHHH----CCCCEEEEeCCeeEeECCCCccEEEEEeC-CCc
Confidence 4444 44444332 357889999999999999999999999 99999999999998866655679999997 566
Q ss_pred CeEEEeCCcceEEEEcCCCcHHHHHHHHHhCCCccCCCCCCCceeeccccc-CCccCCCcccccCccccEEEEEEEecC-
Q 008291 172 PKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLS-NAGISGQAFQHGPQISNVHQLEVVTGK- 249 (571)
Q Consensus 172 i~i~i~~~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~~~d~v~~levV~~~- 249 (571)
++++.+. .+|+|+||+.|.+|.+++.++|+......+....||||++. |+|..+ +.+.|.|.++++++.+
T Consensus 87 --i~i~~~~-~~v~vgAG~~~~~l~~~a~~~GL~GlE~laGIPGTVGGAv~mNaGayG-----~ei~D~l~sV~vvd~~~ 158 (363)
T PRK13903 87 --VTVDCGG-GLVRAEAGAVWDDVVARTVEAGLGGLECLSGIPGSAGATPVQNVGAYG-----QEVSDTITRVRLLDRRT 158 (363)
T ss_pred --EEEeCCC-CEEEEEcCCCHHHHHHHHHHcCCccccccCCCCcchhhHhhcCCChhH-----HHHhhhEeEEEEEECCC
Confidence 4566444 69999999999999999999999633333333459999998 655332 2578999999999965
Q ss_pred CeEEEcCCCCCCchhHhhhcCC---CCceEEEEEEEeeeecC
Q 008291 250 GEIINCSEKQNSELFHSVLGGL---GQFGIITRARISLEPAP 288 (571)
Q Consensus 250 G~i~~~~~~~~~dL~~~~~Gs~---G~~GIIt~~tl~l~p~p 288 (571)
|++++.+.+ |++|++|+|. +..+|||+++|++.|..
T Consensus 159 G~~~~~~~~---el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 159 GEVRWVPAA---DLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred CEEEEEEHH---HcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 999998754 9999999983 34899999999999874
No 26
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.76 E-value=4.6e-18 Score=173.64 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=137.8
Q ss_pred cCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCeEEEeCCcceEEEEcC
Q 008291 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSG 188 (571)
Q Consensus 109 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~~i~i~i~~~~~~~v~v~a 188 (571)
..+.+.+++.|+|++|+++++++|++ +++|+.++|+|||+...+.+.+|++|++++++ +++..+.+. .+|+|+|
T Consensus 17 iGg~a~~~v~p~~~~dl~~~l~~~~~----~~ip~~vlG~GSNlL~~d~g~~GvVI~l~~~~-~~i~~~~~~-~~v~v~A 90 (295)
T PRK14649 17 IGGPARYFVEPTTPDEAIAAAAWAEQ----RQLPLFWLGGGSNLLVRDEGFDGLVARYRGQR-WELHEHGDT-AEVWVEA 90 (295)
T ss_pred eCceeeEEEEcCCHHHHHHHHHHHHH----CCCCEEEEecceeEEEeCCCcCeEEEEecCCC-cEEEEeCCc-EEEEEEc
Confidence 57889999999999999999999999 99999999999999988887789999998754 124555544 5999999
Q ss_pred CCcHHHHHHHHHhCCCccCCCCCCCceeeccccc-CCccCCCcccccCccccEEEEEEEecCCeEEEcCCCCCCchhHhh
Q 008291 189 GELWINILHESVKYGLAPKSWTDYLHLTVGGTLS-NAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSV 267 (571)
Q Consensus 189 G~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~~~~~~~~dL~~~~ 267 (571)
|+.|.+|.+++.++||....+...-..||||++. |+|..+ +.+.|+|.++++++.+|++++++++ |+++++
T Consensus 91 G~~~~~l~~~~~~~GL~GlE~l~GIPGTvGGa~~mNaGayg-----~ei~d~l~~V~~~~~~g~~~~~~~~---el~f~Y 162 (295)
T PRK14649 91 GAPMAGTARRLAAQGWAGLEWAEGLPGTIGGAIYGNAGCYG-----GDTATVLIRAWLLLNGSECVEWSVH---DFAYGY 162 (295)
T ss_pred CCcHHHHHHHHHHcCCccccccCCCCcchhHHHHhhccccc-----eEhheeEEEEEEEeCCCCEEEEeHH---HcCccc
Confidence 9999999999999999733333333349999666 776433 6789999999999999999999765 899999
Q ss_pred hcCC--CC--------ceEEEEEEEeeeecC
Q 008291 268 LGGL--GQ--------FGIITRARISLEPAP 288 (571)
Q Consensus 268 ~Gs~--G~--------~GIIt~~tl~l~p~p 288 (571)
|.|. .. --||++++|++.|..
T Consensus 163 R~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 163 RTSVLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred ceeecccccccccccCCeEEEEEEEEECCCC
Confidence 9984 21 239999999998764
No 27
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.71 E-value=8.5e-17 Score=163.82 Aligned_cols=155 Identities=21% Similarity=0.225 Sum_probs=130.9
Q ss_pred cCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCeEEEeCCcceEEEEcC
Q 008291 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSG 188 (571)
Q Consensus 109 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~~i~i~i~~~~~~~v~v~a 188 (571)
..+.+.+++.|+|++|+++++++|++ ++|+.+.|+|+|+...+.+.+|++|.+.+|+.+ +++. ..|+|+|
T Consensus 30 iGG~A~~~v~p~s~eel~~~~~~~~~-----~~p~~vlG~GSNlLv~d~g~~gvVI~l~~~~~i--~i~~---~~v~v~A 99 (297)
T PRK14653 30 IGGPVPLFAIPNSTNGFIETINLLKE-----GIEVKILGNGTNVLPKDEPMDFVVVSTERLDDI--FVDN---DKIICES 99 (297)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHhc-----CCCEEEEcCCeeEEEecCCccEEEEEeCCcCce--EEeC---CEEEEeC
Confidence 57889999999999999999998863 799999999999998888778999999789885 5654 5899999
Q ss_pred CCcHHHHHHHHHhCCCc----cCCCCCCCceeeccccc-CCccCCCcccccC-ccccEEEEEEEecCCeEEEcCCCCCCc
Q 008291 189 GELWINILHESVKYGLA----PKSWTDYLHLTVGGTLS-NAGISGQAFQHGP-QISNVHQLEVVTGKGEIINCSEKQNSE 262 (571)
Q Consensus 189 G~~~~~l~~~l~~~Gl~----~~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~-~~d~v~~levV~~~G~i~~~~~~~~~d 262 (571)
|+.|.+|.+++.++||. ....|+ ||||++. |+|. ||. +.|.|.++++++ +|++++.+++ |
T Consensus 100 G~~l~~L~~~~~~~GL~GlE~l~gIPG----TVGGAv~mNAGa------yG~ei~d~l~~V~~~d-~g~v~~~~~~---e 165 (297)
T PRK14653 100 GLSLKKLCLVAAKNGLSGFENAYGIPG----SVGGAVYMNAGA------YGWETAENIVEVVAYD-GKKIIRLGKN---E 165 (297)
T ss_pred CCcHHHHHHHHHHCCCcchhhhcCCch----hHHHHHHHhCcc------CchhhheeEEEEEEEC-CCEEEEEchh---h
Confidence 99999999999999994 333344 8999999 6653 666 899999999999 7889988765 7
Q ss_pred hhHhhhcCC----CCceEEEEEEEeeeecC
Q 008291 263 LFHSVLGGL----GQFGIITRARISLEPAP 288 (571)
Q Consensus 263 L~~~~~Gs~----G~~GIIt~~tl~l~p~p 288 (571)
+.+.+|.|. +++ |||+|+|++.|..
T Consensus 166 ~~f~YR~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 166 IKFSYRNSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred ccccCccccCCCCCcE-EEEEEEEEEecCC
Confidence 778888764 233 9999999999864
No 28
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.64 E-value=1.2e-15 Score=155.01 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=136.4
Q ss_pred cCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcC-CCcEEEEcCCCCCCeEEEeCCcceEEEEc
Q 008291 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQA-HQGVVINMESLQGPKMQVYAENSFYVDVS 187 (571)
Q Consensus 109 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~-~~givIdl~~l~~i~i~i~~~~~~~v~v~ 187 (571)
..+.+..++.|+|.+|++++++++++ +++|+.+.|+|+|+...+.+ .+|++|.+.+|+.+ +++. ..|+|+
T Consensus 29 iGG~A~~~~~p~~~~eL~~~l~~~~~----~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~~~~~i--~~~~---~~v~a~ 99 (302)
T PRK14650 29 IGGISKLFLTPKTIKDAEHIFKAAIE----EKIKIFILGGGSNILINDEEEIDFPIIYTGHLNKI--EIHD---NQIVAE 99 (302)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHHH----cCCCEEEEeceeEEEEECCCccceEEEEECCcCcE--EEeC---CEEEEE
Confidence 57889999999999999999999999 99999999999999887776 68999998678874 5554 479999
Q ss_pred CCCcHHHHHHHHHhCCCccCCCCCCCceeeccccc-CCccCCCcccccCccccEEEEEEEecCCeEEEcCCCCCCchhHh
Q 008291 188 GGELWINILHESVKYGLAPKSWTDYLHLTVGGTLS-NAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHS 266 (571)
Q Consensus 188 aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~~~~~~~~dL~~~ 266 (571)
||+.|.+|.+++.++||.-...-+.-..||||++. |+|..+ +.+.|.|.++++++.+|++++.+.+ |+.++
T Consensus 100 AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNAGayG-----~ei~d~l~sV~~~d~~g~~~~~~~~---e~~f~ 171 (302)
T PRK14650 100 CGTNFEDLCKFALQNELSGLEFIYGLPGTLGGAIWMNARCFG-----NEISEILDKITFIDEKGKTICKKFK---KEEFK 171 (302)
T ss_pred eCCcHHHHHHHHHHcCCchhhhhcCCCcchhHHHHhhCCccc-----cchheeEEEEEEEECCCCEEEEEHH---HcCcc
Confidence 99999999999999999522222222349999998 777544 5688999999999999999988765 88899
Q ss_pred hhcCC--CCceEEEEEEEeeeecCC
Q 008291 267 VLGGL--GQFGIITRARISLEPAPD 289 (571)
Q Consensus 267 ~~Gs~--G~~GIIt~~tl~l~p~p~ 289 (571)
+|.|. ..-.||++|+|++.|..+
T Consensus 172 YR~S~f~~~~~iIl~a~f~L~~~~~ 196 (302)
T PRK14650 172 YKISPFQNKNTFILKATLNLKKGNK 196 (302)
T ss_pred cccccCCCCCEEEEEEEEEEcCCCH
Confidence 99885 223599999999988653
No 29
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.63 E-value=1.4e-15 Score=156.82 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=134.1
Q ss_pred cCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCeEEEe--CCcceEEEE
Q 008291 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVY--AENSFYVDV 186 (571)
Q Consensus 109 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~~i~i~i~--~~~~~~v~v 186 (571)
..+.+..++.|+|++|+++++++|++ +++|+.+.|+|+|+.... ..+|++|.+ +++++ +++ .++...|+|
T Consensus 17 iGG~A~~~~~p~~~~el~~~~~~~~~----~~~p~~vlG~GSNlLv~D-~~~g~vI~~-~~~~~--~~~~~~~~~~~v~a 88 (334)
T PRK00046 17 IDARARHLVEAESEEQLLEALADARA----AGLPVLVLGGGSNVLFTE-DFDGTVLLN-RIKGI--EVLSEDDDAWYLHV 88 (334)
T ss_pred cCcEEeEEEeeCCHHHHHHHHHHHHH----cCCCEEEEeceEEEEECC-CCCEEEEEe-cCCce--EEEecCCCeEEEEE
Confidence 57889999999999999999999999 999999999999988777 578999998 48774 552 222038999
Q ss_pred cCCCcHHHHHHHHHhCCCccCCCCCCCceeeccccc-CCccCCCcccccCccccEEEEEEEecC-CeEEEcCCCCCCchh
Q 008291 187 SGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLS-NAGISGQAFQHGPQISNVHQLEVVTGK-GEIINCSEKQNSELF 264 (571)
Q Consensus 187 ~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~~~d~v~~levV~~~-G~i~~~~~~~~~dL~ 264 (571)
+||+.|.+|.+++.++|+.-..+-+.-..||||++. |+|..+ +.+.|.|.++++++.+ |++++.+++ |+.
T Consensus 89 ~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNaGayG-----~ei~d~l~~V~v~d~~~g~~~~~~~~---e~~ 160 (334)
T PRK00046 89 GAGENWHDLVLWTLQQGMPGLENLALIPGTVGAAPIQNIGAYG-----VELKDVCDYVEALDLATGEFVRLSAA---ECR 160 (334)
T ss_pred EcCCcHHHHHHHHHHcCchhhHHhcCCCcchhHHHHhcCCcCc-----ccHheeEEEEEEEECCCCcEEEEEHH---HcC
Confidence 999999999999999999533222223349999998 777554 5688999999999987 999999875 899
Q ss_pred HhhhcCC--CC---ceEEEEEEEeeeec
Q 008291 265 HSVLGGL--GQ---FGIITRARISLEPA 287 (571)
Q Consensus 265 ~~~~Gs~--G~---~GIIt~~tl~l~p~ 287 (571)
+++|.|. .. --||++++|++.|.
T Consensus 161 f~YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 161 FGYRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cccccccCCCCCcCCEEEEEEEEEecCC
Confidence 9999985 32 34999999999986
No 30
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=2.3e-15 Score=150.51 Aligned_cols=160 Identities=19% Similarity=0.289 Sum_probs=139.1
Q ss_pred cCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCeEEEeCCcceEEEEcC
Q 008291 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSG 188 (571)
Q Consensus 109 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~~i~i~i~~~~~~~v~v~a 188 (571)
..+.+..++.|++.+|+.++++++.+ .++|+.+.|+|+|+.-.+...+|++|.+.+++.+ +++... ..|+|++
T Consensus 17 iGg~A~~~~~~~~~e~l~~~~~~~~~----~~~p~~ilG~GSNlLv~d~g~~gvvi~~~~~~~~--~~~~~~-~~i~a~a 89 (291)
T COG0812 17 IGGPAEVLVEPRDIEELKAALKYAKA----EDLPVLILGGGSNLLVRDGGIGGVVIKLGKLNFI--EIEGDD-GLIEAGA 89 (291)
T ss_pred cCcceeEEEecCCHHHHHHHHHhhhh----cCCCEEEEecCceEEEecCCCceEEEEcccccce--eeeccC-CeEEEcc
Confidence 57889999999999999999999999 9999999999999887777778999999998774 555544 5999999
Q ss_pred CCcHHHHHHHHHhCCCc----cCCCCCCCceeeccccc-CCccCCCcccccCccccEEEEEEEecCCeEEEcCCCCCCch
Q 008291 189 GELWINILHESVKYGLA----PKSWTDYLHLTVGGTLS-NAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSEL 263 (571)
Q Consensus 189 G~~~~~l~~~l~~~Gl~----~~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~~~~~~~~dL 263 (571)
|+.|.+|.+++.++|+. ....|+ ||||++. |+|..+ +-+.|.+.++++++.+|++.+.+.+ |+
T Consensus 90 G~~~~~l~~~~~~~gl~GlE~l~gIPG----svGgav~mNaGAyG-----~Ei~d~~~~v~~ld~~G~~~~l~~~---el 157 (291)
T COG0812 90 GAPWHDLVRFALENGLSGLEFLAGIPG----SVGGAVIMNAGAYG-----VEISDVLVSVEVLDRDGEVRWLSAE---EL 157 (291)
T ss_pred CCcHHHHHHHHHHcCCcchhhhcCCCc----ccchhhhccCcccc-----cchheeEEEEEEEcCCCCEEEEEHH---Hh
Confidence 99999999999999984 444444 9999988 777554 5688999999999999999999876 89
Q ss_pred hHhhhcCC--CCceEEEEEEEeeeec
Q 008291 264 FHSVLGGL--GQFGIITRARISLEPA 287 (571)
Q Consensus 264 ~~~~~Gs~--G~~GIIt~~tl~l~p~ 287 (571)
.+++|-|. ....||++|+|++.|-
T Consensus 158 ~f~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 158 GFGYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred CcccccCcCCCCCEEEEEEEEEeCCC
Confidence 99999986 3338999999999986
No 31
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.58 E-value=1.1e-14 Score=149.93 Aligned_cols=167 Identities=14% Similarity=0.113 Sum_probs=132.0
Q ss_pred cCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCeEEE-eCCcceEEEEc
Q 008291 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQV-YAENSFYVDVS 187 (571)
Q Consensus 109 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~~i~i~i-~~~~~~~v~v~ 187 (571)
..+.+..++.|+|.+|++++++++++ +++|+.+.|+|+|+...+.+.+|+||.+.+|+.+++.. ..+. ..|+|+
T Consensus 26 IGG~A~~~~~p~s~~el~~~l~~~~~----~~~p~~iLG~GSNlL~~D~g~~G~VI~l~~~~~i~i~~~~~~~-~~v~ag 100 (354)
T PRK14648 26 IGGAAQFWAEPRSCTQLRALIEEAQR----ARIPLSLIGGGSNVLIADEGVPGLMLSLRRFRSLHTQTQRDGS-VLVHAG 100 (354)
T ss_pred eCcEEEEEEeeCCHHHHHHHHHHHHH----cCCCEEEEeceeEEEEeCCCccEEEEEeCCcCceEEeeccCCc-EEEEEE
Confidence 57889999999999999999999999 99999999999999988877789999997788753211 2333 479999
Q ss_pred CCCcHHHHHHHHHhCCCccCCCCCCCceeeccccc-CCccCCCcccccCccccEEEEEEE--------------------
Q 008291 188 GGELWINILHESVKYGLAPKSWTDYLHLTVGGTLS-NAGISGQAFQHGPQISNVHQLEVV-------------------- 246 (571)
Q Consensus 188 aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~~~d~v~~levV-------------------- 246 (571)
||+.|.+|.+++.++||....+-+....||||++. |+|..+ +.+.|.|.+++++
T Consensus 101 AG~~~~~Lv~~~~~~gl~GlE~laGIPGTVGGAv~mNAGAyG-----~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~ 175 (354)
T PRK14648 101 AGLPVAALLAFCAHHALRGLETFAGLPGSVGGAAYMNARCYG-----RAIADCFHSARTLVLHPVRSRAKELPEVRKNAQ 175 (354)
T ss_pred eCCcHHHHHHHHHHcCCcchhhhcCCCcchhhHhhhcCCccc-----eEhhheEEEEEEEeccCcccccccccccccccc
Confidence 99999999999999999533222223349999998 776544 4688999999999
Q ss_pred ecCCeE-------------EEcCCCCCCchhHhhhcCC--CC--------ceEEEEEEEeeeecC
Q 008291 247 TGKGEI-------------INCSEKQNSELFHSVLGGL--GQ--------FGIITRARISLEPAP 288 (571)
Q Consensus 247 ~~~G~i-------------~~~~~~~~~dL~~~~~Gs~--G~--------~GIIt~~tl~l~p~p 288 (571)
+.+|++ .+... .|+.|++|.|. .. --||++++|++.|..
T Consensus 176 ~~~g~~~~~~~~~~~~~~~~~~~~---~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 176 DKRGECLGLDGGPFTCSSFQTVFA---RAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred cCCCceecccccccccccceEecH---HHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 456776 34433 37889999875 21 239999999999864
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.34 E-value=6.2e-12 Score=126.19 Aligned_cols=151 Identities=21% Similarity=0.201 Sum_probs=119.7
Q ss_pred cCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCC-CCCCeEEEeCCcceEEEEc
Q 008291 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMES-LQGPKMQVYAENSFYVDVS 187 (571)
Q Consensus 109 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~-l~~i~i~i~~~~~~~v~v~ 187 (571)
..+.+..++ |++++|+++++ ++|+.+.|+|+|+...+...+|++|.+.+ ++. ++++ . +|+
T Consensus 17 iGG~A~~~~-p~~~~~l~~~~----------~~p~~vlG~GSNlL~~D~g~~g~vI~l~~~~~~--~~~~----~--~a~ 77 (273)
T PRK14651 17 VGGPAELWT-VETHEQLAEAT----------EAPYRVLGGGSNLLVSDAGVPERVIRLGGEFAE--WDLD----G--WVG 77 (273)
T ss_pred cCceEEEEe-cCCHHHHHHHH----------CCCeEEEeceeEEEEcCCCcceEEEEECCccee--EeEC----C--EEE
Confidence 567788888 99999999877 27899999999998888777899998865 443 3321 3 699
Q ss_pred CCCcHHHHHHHHHhCCCccCCCCCCCceeeccccc-CCccCCCcccccCccccEEEEEEEecCCeEEEcCCCCCCchhHh
Q 008291 188 GGELWINILHESVKYGLAPKSWTDYLHLTVGGTLS-NAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHS 266 (571)
Q Consensus 188 aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~~~~~~~~dL~~~ 266 (571)
||+.|.+|.+++.++|+.-..+-+.-..||||++. |+|..+ +.+.|.|.++++++ +|++++.+++ |+.++
T Consensus 78 AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNaGayG-----~ei~d~l~~V~~~~-~g~~~~~~~~---e~~f~ 148 (273)
T PRK14651 78 GGVPLPGLVRRAARLGLSGLEGLVGIPAQVGGAVKMNAGTRF-----GEMADALHTVEIVH-DGGFHQYSPD---ELGFG 148 (273)
T ss_pred CCCcHHHHHHHHHHCCCcchhhhcCCCcchhhHHHhhCCccc-----cChheeEEEEEEEE-CCCEEEEEHH---Hcccc
Confidence 99999999999999999522222222349999998 776444 46889999999998 8999998875 89999
Q ss_pred hhcCC-CCceEEEEEEEeeeec
Q 008291 267 VLGGL-GQFGIITRARISLEPA 287 (571)
Q Consensus 267 ~~Gs~-G~~GIIt~~tl~l~p~ 287 (571)
+|.|. -.--||++++|++.|.
T Consensus 149 YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 149 YRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred ccccCCCCCEEEEEEEEEECCC
Confidence 99885 2225999999999886
No 33
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=99.24 E-value=2.3e-13 Score=135.42 Aligned_cols=219 Identities=14% Similarity=0.243 Sum_probs=123.9
Q ss_pred cCCceEEEEEEeCCHHHHHHHHHHHHh---cCCccccccceEEeccccccccccccCCCCCccccccCCCCCCeEEEEEE
Q 008291 287 APDMVKWIRVLYSDFATFARDQEYLIS---AEKTFDYIEGFVMVNRTGLLNNWRSSFDPQDPVQASQFKSDGQTLFCLEL 363 (571)
Q Consensus 287 ~p~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~e~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 363 (571)
.|+.+..+.+.|++++++.+++..++. .+..+|++|...+....... . ...+....+++++|
T Consensus 1 lPe~~~~~~~~f~~~~~a~~~~~~i~~~g~~p~a~el~d~~~~~~~~~~~------------~--~~~~~~~~~~llv~- 65 (248)
T PF02913_consen 1 LPEARATALVFFPSFEDAADAVRAIMQSGIIPSAIELLDSAALKLALEHW------------G--EPLPPEGGAVLLVE- 65 (248)
T ss_dssp --SEEEEEEEEESCHHHHHHHHCCCCHHCSSCCECCCCHHHHHHHHHHSE------------E--ETSSTTTSEEEEEE-
T ss_pred CCcceEEEEEEcCCHHHHHHHHHHHHHcCCCceEEeeeCHHHHHHHHhhc------------C--CCccCCcccEEEEE-
Confidence 377888899999999999988887665 36678998875442211100 0 02344567788898
Q ss_pred eeecCCCChHHHHHHHH-HHHhhcccCCCeeeeccchhhhhhhhhhhhHHHHHhcccccCCc-----------------c
Q 008291 364 AKYINKDEKDLVNQEVE-SSLSVLNYIPSTLFLSEVSYIEFLDRVHVSEVKLRSKGLWEVPH-----------------P 425 (571)
Q Consensus 364 ~~~~~~~~~~~~~~~l~-~ll~~l~~~~~~~~~~dv~y~~~l~~~~~~~~~~~~~~~W~~r~-----------------~ 425 (571)
+++.+++.++++++ .+.+.+....+.... .+.+......+|..|+ .
T Consensus 66 ---~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~-------------~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~ 129 (248)
T PF02913_consen 66 ---FEGSDEEAVEEQLEAEIEEICKKYGGEDVV-------------IADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWD 129 (248)
T ss_dssp ---CCCHHHCCHHHHHHHHHHHHHCTCTCCEEE-------------EEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEE
T ss_pred ---ECCCcHHHHHHHHHHHHHHHHhhcCCceeE-------------EeCCHHHHHhhhhhhhhhcccccccccccCCcee
Confidence 46555455666666 666666554433200 0111111223333322 1
Q ss_pred ceecccCcccHHHHHHHHHHhhhcccCC---ccEEEecCCCCCCCCCCCccCCCcceEEeeeecCCCCCCCCCCCcHHHH
Q 008291 426 WLNLFIPQSKIHDFAREVFGNILAETSN---GPILIYPLNKSKWDNRTSVVIPEEDVFYLVAFLSSAVPSSKGTDGLEHI 502 (571)
Q Consensus 426 ~~d~~vP~s~i~~f~~~v~~~il~~~~~---g~i~~~p~~~~~~~~~~~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~ 502 (571)
..|+.||.++++++++.+ ++++...+. ..-|+++ ......+.. .. ..+...+.+
T Consensus 130 ~~dv~vp~~~l~~~~~~~-~~~~~~~~~~~~~~gH~~~----------------g~~h~~~~~-~~-----~~~~~~~~~ 186 (248)
T PF02913_consen 130 TEDVAVPPSRLPEFLREI-RALLREYGLEVCHFGHAGD----------------GNLHLYILF-DP-----RDPEEPERA 186 (248)
T ss_dssp EEEEESCHHHHHHHHHHH-HHHHHHCTEEEEEEEEEEE----------------CEEEEEEEE-ET-----TSHHHHHHH
T ss_pred eeeecccchhhhhHHHhh-hhhhhhccccccceEEccC----------------CeEEEEeec-cc-----chHHHHHHH
Confidence 369999999999999987 455533220 1111221 111111111 01 011345666
Q ss_pred HHHHHHHHHHHHHcCCCceeccCCCCC--HHHHH-Hhhch-hHHHHHHhhhcCCCCCCCCCCC
Q 008291 503 LTQNKRILEYCETARLGVKQYLPHYTT--QEQWR-SHFGP-QWEVFVQRKSTYDPLAILAPGQ 561 (571)
Q Consensus 503 ~~~~r~i~~~~~~~G~~~~~Yl~~~~~--~~~w~-~~yG~-~~~~l~~lK~~yDP~~ifnPG~ 561 (571)
.+..+++.+.+.+.|+. .+..|-.. ...|. ..+|+ .+..|++||+.|||+||||||+
T Consensus 187 ~~~~~~~~~~~~~~gG~--is~eHG~G~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilNPGk 247 (248)
T PF02913_consen 187 EALWDELYELVLELGGS--ISAEHGIGKLKKPYLEEEYGPAALRLMRAIKQAFDPNGILNPGK 247 (248)
T ss_dssp HHHHHHHHHHHHHTT-B--BSSSSGGGHHHHHHHCHHCHHHHHHHHHHHHHHH-TTS-BSTTG
T ss_pred HHHHHHHHHHHHhcccc--cccccchhhhhHHHHHHhcchHHHHHHHHhhhccCCccCCCCCC
Confidence 67777777777665533 35555322 23443 45666 6999999999999999999996
No 34
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.06 E-value=5.8e-10 Score=110.97 Aligned_cols=146 Identities=14% Similarity=0.085 Sum_probs=110.3
Q ss_pred cCCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCCCCCCeEEEeCCcceEEEEcC
Q 008291 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSG 188 (571)
Q Consensus 109 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~l~~i~i~i~~~~~~~v~v~a 188 (571)
..+.+...+.|++.+ + ++|+.+.|+|+|+.-.+...++++ -+..++. ++++. ..|+|+|
T Consensus 15 iGG~A~~~~~~~~~~-l--------------~~p~~vlG~GSNlLv~D~g~~~vv-~~~~~~~--~~~~~---~~v~~~A 73 (257)
T PRK13904 15 IGPPLEVLVLEEIDD-F--------------SQDGQIIGGANNLLISPNPKNLAI-LGKNFDY--IKIDG---ECLEIGG 73 (257)
T ss_pred ECceEEEEEEechhh-h--------------CCCeEEEeceeEEEEecCCccEEE-EccCcCe--EEEeC---CEEEEEc
Confidence 577888899998877 5 479999999999886666645554 3455776 45654 5899999
Q ss_pred CCcHHHHHHHHHhCCCccCCCCCCCceeeccccc-CCccCCCcccccCccccEEEEEEEecCCeEEEcCCCCCCchhHhh
Q 008291 189 GELWINILHESVKYGLAPKSWTDYLHLTVGGTLS-NAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSV 267 (571)
Q Consensus 189 G~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~~~~~~~~dL~~~~ 267 (571)
|+.|.+|.+++.++|+.-..+-..-..||||++. |+|..+ +.+.|.|.++++++ | +.++ .|+.+++
T Consensus 74 G~~l~~l~~~~~~~gl~GlE~l~gIPGtVGGAv~mNaGa~g-----~ei~d~l~~V~~~~--~---~~~~---~e~~f~Y 140 (257)
T PRK13904 74 ATKSGKIFNYAKKNNLGGFEFLGKLPGTLGGLVKMNAGLKE-----YEISNNLESICTNG--G---WIEK---EDIGFGY 140 (257)
T ss_pred CCcHHHHHHHHHHCCCchhhhhcCCCccHHHHHHhcCCcCc-----cchheeEEEEEEEe--e---EEeH---HHCcccc
Confidence 9999999999999999522222222349999998 777544 45789999999998 4 3333 3888999
Q ss_pred hcCCCCceEEEEEEEeeeecCC
Q 008291 268 LGGLGQFGIITRARISLEPAPD 289 (571)
Q Consensus 268 ~Gs~G~~GIIt~~tl~l~p~p~ 289 (571)
|.|.=. .||++++|++.|..+
T Consensus 141 R~S~~~-~iIl~a~f~l~~~~~ 161 (257)
T PRK13904 141 RSSGIN-GVILEARFKKTHGFD 161 (257)
T ss_pred cCcCCC-cEEEEEEEEECCCCH
Confidence 988522 499999999998653
No 35
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=98.36 E-value=2.5e-07 Score=67.74 Aligned_cols=41 Identities=22% Similarity=0.443 Sum_probs=28.2
Q ss_pred ccCCCCC-HH--HH-HHhhchhHHHHHHhhhcCCCCCCCCCCCcc
Q 008291 523 YLPHYTT-QE--QW-RSHFGPQWEVFVQRKSTYDPLAILAPGQRI 563 (571)
Q Consensus 523 Yl~~~~~-~~--~w-~~~yG~~~~~l~~lK~~yDP~~ifnPG~~I 563 (571)
|+|+-.. .. +| ..+||.+|++|++||++|||.++|...|.|
T Consensus 2 Y~Ny~d~~~~~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I 46 (47)
T PF08031_consen 2 YVNYPDPDLPGDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSI 46 (47)
T ss_dssp -TTS--GGGGSSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS-
T ss_pred cccCCCCccchhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCc
Confidence 6776322 22 55 477999999999999999999999998877
No 36
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=96.97 E-value=0.0018 Score=65.38 Aligned_cols=119 Identities=15% Similarity=0.169 Sum_probs=62.5
Q ss_pred ceecccCcccHHHHHHHHHHhhh-ccc---CCccEEEecCCCCCCCCCCCccCC--Ccc-eEEeeeecCCCCCCCCCCCc
Q 008291 426 WLNLFIPQSKIHDFAREVFGNIL-AET---SNGPILIYPLNKSKWDNRTSVVIP--EED-VFYLVAFLSSAVPSSKGTDG 498 (571)
Q Consensus 426 ~~d~~vP~s~i~~f~~~v~~~il-~~~---~~g~i~~~p~~~~~~~~~~~~~~p--~~~-~~~~v~~l~~~~~~~~~~~~ 498 (571)
..+.+||.++..++++++. +++ .+. ...|+.++-..... .-+-| .++ ++..+-.+.... .+..
T Consensus 127 ~~E~~iP~~~~~~~l~~l~-~~~~~~~~~~~~~pie~R~~~~d~-----~~Ls~~~~~~~~~i~~~~~~~~~----~~~~ 196 (259)
T PF04030_consen 127 EMEYAIPIENAPEALRELR-ALIDKEGGFPVHFPIEVRFVKADD-----AWLSPAYGRDTCYIEIHMYRPMG----DPVP 196 (259)
T ss_dssp EEEEEEEGGGHHHHHHHHH-HTHHHHG--GGEEEEEEEEE--B------STT-TTBTS-EEEEEEEE-S-HH-------H
T ss_pred eEEEeeCHHHHHHHHHHHH-HHHHHcccCceeEEEEEEEECCCh-----hhcCCCCCCCEEEEEEEEeCCcc----cccc
Confidence 3689999999999999985 554 333 22577777665432 11222 222 222232222211 0111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCce-eccCCCCCHHHHHHhhchhHHHHHHhhhcCCCCCCCCC
Q 008291 499 LEHILTQNKRILEYCETARLGVK-QYLPHYTTQEQWRSHFGPQWEVFVQRKSTYDPLAILAP 559 (571)
Q Consensus 499 ~~~~~~~~r~i~~~~~~~G~~~~-~Yl~~~~~~~~w~~~yG~~~~~l~~lK~~yDP~~ifnP 559 (571)
..+..+++.+.+.+.|+.++ .. .+..+.++..+.| ++|++|.++|++|||+|+|..
T Consensus 197 ---~~~~~~~~e~~~~~~ggRpHWgK-~~~~~~~~l~~~Y-p~~~~F~~~r~~~DP~g~F~n 253 (259)
T PF04030_consen 197 ---YEEFFRAFEQILRKYGGRPHWGK-NHTLTAEQLRKLY-PRLDDFLAVRKKLDPQGVFLN 253 (259)
T ss_dssp ---HHHHHHHHHHHHGGGT-EE-TTS------HHHHHHT--TTHHHHHHHHHHH-TT-TT--
T ss_pred ---HHHHHHHHHHHHHHcCCEECcCc-CCCCCHHHHHHHC-cCHHHHHHHHHHhCCCCCCCC
Confidence 34444445555556665443 22 2356788899999 999999999999999999974
No 37
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=96.96 E-value=0.007 Score=59.96 Aligned_cols=133 Identities=11% Similarity=0.084 Sum_probs=79.2
Q ss_pred hcccccCCcc------ceecccCcccHHHHHHHHHHhhhccc-------CC-ccEEEecCCCC-CCCCCCCccCCCcceE
Q 008291 416 SKGLWEVPHP------WLNLFIPQSKIHDFAREVFGNILAET-------SN-GPILIYPLNKS-KWDNRTSVVIPEEDVF 480 (571)
Q Consensus 416 ~~~~W~~r~~------~~d~~vP~s~i~~f~~~v~~~il~~~-------~~-g~i~~~p~~~~-~~~~~~~~~~p~~~~~ 480 (571)
....|+.|-. -...+||.++..+++++|. ++.... .. .||.++-.... .|... ..+.++
T Consensus 48 ~~c~wd~r~~~g~~F~E~EyaVP~e~~~~aL~elr-~l~~~~~~~l~~~ev~fPIevR~vaADdawLSp-----~rDSv~ 121 (257)
T PLN00107 48 TACPWDPRIKHGEFFFQSAISVPLSGAAAFINDIK-ALRDIEPDALCGLELNYGVLLRYVRASPAHLGK-----EEDALD 121 (257)
T ss_pred ccCCCCccccCCcceEEEEEEecHHHHHHHHHHHH-HHHHhCcccccccccccCeEEEEecCcchhhCC-----CCCeEE
Confidence 3556776632 2479999999999999984 555321 11 35666544332 23322 123445
Q ss_pred EeeeecCCC-CCCCCCCCcHHHHHHHHHHHHHH-HHHcCCCceeccCCCCCHHHHHHhhchhHHHHHHhhhcCCCCCCCC
Q 008291 481 YLVAFLSSA-VPSSKGTDGLEHILTQNKRILEY-CETARLGVKQYLPHYTTQEQWRSHFGPQWEVFVQRKSTYDPLAILA 558 (571)
Q Consensus 481 ~~v~~l~~~-~~~~~~~~~~~~~~~~~r~i~~~-~~~~G~~~~~Yl~~~~~~~~w~~~yG~~~~~l~~lK~~yDP~~ifn 558 (571)
..+..+... .+. .+...+ +..+++++. ..+.|..++-==+|..+.+++.+.| ++|+.|+++|+++||.|+|.
T Consensus 122 I~~~~yr~~~~~~--~pr~~~---~~f~eiEqial~kygGRPHWGK~h~l~~~~l~~lY-Pr~~dFlavR~~lDP~G~F~ 195 (257)
T PLN00107 122 FDLTYYRSKDDPA--APRLHE---DAMEEIEQMAILKYGALPHWGKNRNAAFDGAIAKY-KKAGEFLKVKERLDPEGLFS 195 (257)
T ss_pred EEEEEecccCCcc--ccccHH---HHHHHHHHHHHHhcCCcCCchhccCCCHHHHHHHC-cCHHHHHHHHHHhCCCCccC
Confidence 555555432 111 011233 344555543 4455655542223456788888889 88999999999999999997
Q ss_pred CC
Q 008291 559 PG 560 (571)
Q Consensus 559 PG 560 (571)
..
T Consensus 196 N~ 197 (257)
T PLN00107 196 SE 197 (257)
T ss_pred CH
Confidence 64
No 38
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.31 E-value=0.025 Score=61.97 Aligned_cols=149 Identities=11% Similarity=0.042 Sum_probs=89.8
Q ss_pred CCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCC---CcCCCcEEEEcCCCCCC-eEEEeCCcceEEEEc
Q 008291 112 LPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQ---AQAHQGVVINMESLQGP-KMQVYAENSFYVDVS 187 (571)
Q Consensus 112 ~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~---~~~~~givIdl~~l~~i-~i~i~~~~~~~v~v~ 187 (571)
...-+++|+|.+|+.++++. ++ ...+.+|||++.-. .......+||++++... .++.++ ..++++
T Consensus 191 ~~~~~~~P~sl~Ea~~ll~~-------~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~---~~l~IG 259 (467)
T TIGR02963 191 GGERFIAPTTLDDLAALKAA-------HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETD---DGIEIG 259 (467)
T ss_pred CCceEECCCCHHHHHHHHhh-------CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcC---CEEEEe
Confidence 34568999999999888763 22 24578899997422 12234789999986543 144443 689999
Q ss_pred CCCcHHHHHHHHHhC--CCc-----cCCCCCCCceeecccccCCccCCCcccccCccccE-----E--EEEEEecCCeEE
Q 008291 188 GGELWINILHESVKY--GLA-----PKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNV-----H--QLEVVTGKGEII 253 (571)
Q Consensus 188 aG~~~~~l~~~l~~~--Gl~-----~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v-----~--~levV~~~G~i~ 253 (571)
|++++.++.+.+.++ .|. .-+..--+.+||||+|+++.- ..|.. + .+++..++|+.
T Consensus 260 A~vT~~el~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP---------~sD~~p~LlALdA~v~l~~~~G~R- 329 (467)
T TIGR02963 260 AAVTLTDAYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGSP---------IGDSPPALIALGARLTLRKGEGRR- 329 (467)
T ss_pred cCCcHHHHHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCCC---------chHHHHHHHHcCCEEEEEcCCCcE-
Confidence 999999998755543 121 223333357899999987641 22322 2 34555666632
Q ss_pred EcCCCCCCchhHhhhc-CCCCceEEEEEEEee
Q 008291 254 NCSEKQNSELFHSVLG-GLGQFGIITRARISL 284 (571)
Q Consensus 254 ~~~~~~~~dL~~~~~G-s~G~~GIIt~~tl~l 284 (571)
+..-. |+|...+- ....--||+++.+..
T Consensus 330 ~vpl~---dF~~g~~kt~L~~~EiI~~I~iP~ 358 (467)
T TIGR02963 330 TLPLE---DFFIDYGKTDRQPGEFVEALHVPR 358 (467)
T ss_pred EEeHH---HhhcccccccCCCCceEEEEEecC
Confidence 22111 44433222 112224999998874
No 39
>PRK09799 putative oxidoreductase; Provisional
Probab=96.22 E-value=0.009 Score=60.30 Aligned_cols=142 Identities=14% Similarity=0.134 Sum_probs=84.8
Q ss_pred EEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCC-CcCCCcEEEEcCCCCCC-eEEEeCCcceEEEEcCCCcH
Q 008291 115 AVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQ-AQAHQGVVINMESLQGP-KMQVYAENSFYVDVSGGELW 192 (571)
Q Consensus 115 ~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~-~~~~~givIdl~~l~~i-~i~i~~~~~~~v~v~aG~~~ 192 (571)
.+.+|+|.+|..++++. ++-...+.+|||.+... ......++||++++ .. .++.+ + ..+++++++++
T Consensus 4 ~y~~P~sl~Ea~~ll~~-------~~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL~~I~~~--~-~~l~IGA~vT~ 72 (258)
T PRK09799 4 QFFRPDSVEQALELKRR-------YQDEAVWFAGGSKLNATPTRTDKKIAISLQDL-ELDWIEWD--N-GALRIGAMSRL 72 (258)
T ss_pred cEeCCCCHHHHHHHHHh-------CCCCCEEEecCCChHhhhCCCCCCEEEEcCCC-CCCeEEec--C-CEEEEccCCcH
Confidence 46899999999888753 22124578999997422 22235789999986 43 13443 3 69999999999
Q ss_pred HHHHHHHHhC-CCc-----cCCCCCCCceeecccccCCccCCCcccccCccc--cEEEEEEEecCCeEEEcCCCCCCchh
Q 008291 193 INILHESVKY-GLA-----PKSWTDYLHLTVGGTLSNAGISGQAFQHGPQIS--NVHQLEVVTGKGEIINCSEKQNSELF 264 (571)
Q Consensus 193 ~~l~~~l~~~-Gl~-----~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d--~v~~levV~~~G~i~~~~~~~~~dL~ 264 (571)
.++.+...-. .|. .-++.--+..||||++.++.-. +...- ..+..+|+..+|+.+... |+|
T Consensus 73 ~~l~~~~~~~~~L~~a~~~vas~qIRN~aTiGGNl~~a~p~------sD~~p~LlAldA~v~l~~~r~vpl~-----~f~ 141 (258)
T PRK09799 73 QPLRDARFIPAALREALGFVYSRHLRNQSTIGGEIAARQEE------SVLLPVLLALDAELVFGNGETLSIE-----DYL 141 (258)
T ss_pred HHHHhCcccHHHHHHHHHHhCCHHHhccchhHHHhhcCCcc------HHHHHHHHHcCCEEEEecCcEEeHH-----Hhc
Confidence 9987743211 121 2233333578999999876311 11111 123455555556444331 333
Q ss_pred HhhhcCCCCceEEEEEEEe
Q 008291 265 HSVLGGLGQFGIITRARIS 283 (571)
Q Consensus 265 ~~~~Gs~G~~GIIt~~tl~ 283 (571)
.|..+ .|||++.+.
T Consensus 142 ---~g~~~--Eil~~I~iP 155 (258)
T PRK09799 142 ---ACPCD--RLLTEIIIP 155 (258)
T ss_pred ---CCCCC--cEEEEEEcC
Confidence 33333 589998776
No 40
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=95.93 E-value=0.0028 Score=59.91 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=71.3
Q ss_pred CcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCC---cCCCcEEEEcCCCCCC-eEEEeCCcceEEEEcC
Q 008291 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQA---QAHQGVVINMESLQGP-KMQVYAENSFYVDVSG 188 (571)
Q Consensus 113 p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~---~~~~givIdl~~l~~i-~i~i~~~~~~~v~v~a 188 (571)
+..+++|+|.+|..++++ .. . ...+.+|||.+.... ......+||++++... .++.++ ..++++|
T Consensus 2 ~~~~~~P~sl~ea~~ll~--~~----~--~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~---~~l~IGA 70 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA--KG----P--DARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDD---GGLRIGA 70 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH--HG----T--TEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEET---SEEEEET
T ss_pred CeEEEccCCHHHHHHHHh--cC----C--CCEEEeCCCccchhcccCccccceEEEeEEecccccEEEec---cEEEECC
Confidence 446789999999999998 22 2 256889999865221 1135689999987433 155554 6999999
Q ss_pred CCcHHHHHHHHH---------hCCCccCCCCCCCceeecccccCCccCCCcccccCccccE-------EEEEEEecCCe
Q 008291 189 GELWINILHESV---------KYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNV-------HQLEVVTGKGE 251 (571)
Q Consensus 189 G~~~~~l~~~l~---------~~Gl~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v-------~~levV~~~G~ 251 (571)
++++.++.+.-. ++-...-+..--+.+|+||++.++... .|.+ -.++++.++|+
T Consensus 71 ~vtl~~l~~~~~~~~~~p~L~~~~~~ias~~IRn~aTiGGNl~~~~~~---------sD~~~~Llal~A~v~i~~~~g~ 140 (171)
T PF00941_consen 71 AVTLSELEESPLIQQYFPALAQAARRIASPQIRNRATIGGNLCNASPA---------SDLAPALLALDARVEIASPDGT 140 (171)
T ss_dssp TSBHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHTT-BHHHHHHHTBTT----------SHHHHHHHTT-EEEEEETTEE
T ss_pred CccHHHHhhcchhhhhHHHHHHHHHHhCCHhHeeeeeeccccccCccc---------ccHHHHHHHhCcEEEEEcCCee
Confidence 999999988611 110011122222567999999766421 2322 25677777875
No 41
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=95.90 E-value=0.014 Score=58.96 Aligned_cols=99 Identities=14% Similarity=0.138 Sum_probs=63.7
Q ss_pred EEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCC-CCCcCCCcEEEEcCCCCCC-eEEEeCCcceEEEEcCCCcHH
Q 008291 116 VLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQ-GQAQAHQGVVINMESLQGP-KMQVYAENSFYVDVSGGELWI 193 (571)
Q Consensus 116 vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~-g~~~~~~givIdl~~l~~i-~i~i~~~~~~~v~v~aG~~~~ 193 (571)
+++|+|.+|..++++. ++-.-.+.+|||.+. ........++||+.++ .. .++.++ ..+++++++++.
T Consensus 4 y~~P~sl~Ea~~ll~~-------~~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL~~I~~~~---~~l~IGA~~t~~ 72 (257)
T TIGR03312 4 FFRPESTIQALELKKR-------HTGVAVWFAGGSKLNATPTRTDKKVAISLDKL-ALDKIELQG---GALHIGAMCHLQ 72 (257)
T ss_pred eECCCCHHHHHHHHHh-------CCCCCEEEecCcchhhhhcccCCCEEEEcCCC-CCCcEEecC---CEEEEEeCCcHH
Confidence 5789999999887653 221234678999985 3333334688999886 43 144433 689999999999
Q ss_pred HHHHHHH-hCCC-----ccCCCCCCCceeecccccCCc
Q 008291 194 NILHESV-KYGL-----APKSWTDYLHLTVGGTLSNAG 225 (571)
Q Consensus 194 ~l~~~l~-~~Gl-----~~~~~~~~~~~tvGG~~~~~g 225 (571)
++.+... +..+ ..-++.--+..|+||++.|+.
T Consensus 73 ~l~~~~~~~~~L~~aa~~va~~qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 73 SLIDNELTPAALKEALGFVYSRHIRNQATIGGEIAAFQ 110 (257)
T ss_pred HHHhCcchHHHHHHHHHHhCCHHHhccccHHHHhhcCC
Confidence 9875311 1011 011223335779999998764
No 42
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=94.33 E-value=0.061 Score=55.30 Aligned_cols=149 Identities=11% Similarity=0.136 Sum_probs=86.0
Q ss_pred EEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCC---CcCCCcEEEEcCCCCCC-eEEEeCCcceEEEEcCCC
Q 008291 115 AVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQ---AQAHQGVVINMESLQGP-KMQVYAENSFYVDVSGGE 190 (571)
Q Consensus 115 ~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~---~~~~~givIdl~~l~~i-~i~i~~~~~~~v~v~aG~ 190 (571)
-++.|+|.+|..++++. ++ ...+.+|||.+... .......+||++++... .++..+ + ..+++++++
T Consensus 6 ~~~~P~sl~Ea~~ll~~-------~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~-~-~~l~IGA~v 75 (291)
T PRK09971 6 EYHEAATLEEAIELLAD-------NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAE-D-GSIRIGAAT 75 (291)
T ss_pred ceeCCCCHHHHHHHHHh-------CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecC-C-CEEEEEeCC
Confidence 57899999999888763 21 23578999997421 12234789999986543 134333 2 579999999
Q ss_pred cHHHHHHH--HHhC-C-C-----ccCCCCCCCceeecccccCCccCCCcccccCccccE-----E--EEEEEecCCe-EE
Q 008291 191 LWINILHE--SVKY-G-L-----APKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNV-----H--QLEVVTGKGE-II 253 (571)
Q Consensus 191 ~~~~l~~~--l~~~-G-l-----~~~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v-----~--~levV~~~G~-i~ 253 (571)
++.++.+. +.++ . | ..-++.--+.+|+||++.++.- ..|.+ + .+++..++|+ .+
T Consensus 76 t~~~l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~p---------~sD~~~~Llal~A~v~i~~~~g~R~v 146 (291)
T PRK09971 76 TFTQIIEDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGAT---------SADSAPPLFALDAKLEIHSPNGVRFV 146 (291)
T ss_pred cHHHHhcChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCCc---------chhHHHHHHHcCCEEEEEcCCCcEEE
Confidence 99999762 1111 1 1 0122233357899999987641 12332 2 3455566674 22
Q ss_pred EcCCCCCCchhHhhhc-CCCCceEEEEEEEeeeec
Q 008291 254 NCSEKQNSELFHSVLG-GLGQFGIITRARISLEPA 287 (571)
Q Consensus 254 ~~~~~~~~dL~~~~~G-s~G~~GIIt~~tl~l~p~ 287 (571)
... |+|.+..- ....=-|||++.+...+.
T Consensus 147 p~~-----df~~g~~~t~l~~~Eil~~I~iP~~~~ 176 (291)
T PRK09971 147 PIN-----GFYTGPGKVSLEHDEILVAFIIPPEPY 176 (291)
T ss_pred EHH-----HhcCCccccccCCCceEEEEEeCCCCC
Confidence 221 44432211 112223899998875443
No 43
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=93.18 E-value=0.09 Score=54.67 Aligned_cols=100 Identities=15% Similarity=0.223 Sum_probs=63.9
Q ss_pred cEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCC---CcCCCcEEEEcCCCCCC-eEEEeCCcceEEEEcCC
Q 008291 114 SAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQ---AQAHQGVVINMESLQGP-KMQVYAENSFYVDVSGG 189 (571)
Q Consensus 114 ~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~---~~~~~givIdl~~l~~i-~i~i~~~~~~~v~v~aG 189 (571)
-.+++|+|.+|..++++. ++ .-.+.+|||++... .......+||+.++... .++.++ ..++++++
T Consensus 5 f~~~~P~sl~eA~~ll~~-------~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~---~~l~IGA~ 73 (321)
T TIGR03195 5 FRTLRPASLADAVAALAA-------HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLA---DGLRIGAG 73 (321)
T ss_pred ceEECCCCHHHHHHHHhh-------CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecC---CEEEEecc
Confidence 357899999999887753 21 12478999986422 11234788999986432 145443 68999999
Q ss_pred CcHHHHHHHHH--h-CC-C-----ccCCCCCCCceeecccccCC
Q 008291 190 ELWINILHESV--K-YG-L-----APKSWTDYLHLTVGGTLSNA 224 (571)
Q Consensus 190 ~~~~~l~~~l~--~-~G-l-----~~~~~~~~~~~tvGG~~~~~ 224 (571)
+++.++.+.-. + .. | ..-+..--+..||||+|.++
T Consensus 74 vT~~~l~~~~~i~~~~p~L~~a~~~ias~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 74 VTLAALAEDALVRTRWPALAQAARAVAGPTHRAAATLGGNLCLD 117 (321)
T ss_pred CcHHHHhhChhhHhHhHHHHHHHHHhCCHHHhCceecHHhhhcc
Confidence 99999865311 1 11 1 01233333578999999864
No 44
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=92.97 E-value=0.053 Score=54.97 Aligned_cols=96 Identities=10% Similarity=0.081 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCC-C---cCCCcEEEEcCCCCCCeEEEeCCcceEEEEcCCCcHHH
Q 008291 119 PNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQ-A---QAHQGVVINMESLQGPKMQVYAENSFYVDVSGGELWIN 194 (571)
Q Consensus 119 P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~-~---~~~~givIdl~~l~~i~i~i~~~~~~~v~v~aG~~~~~ 194 (571)
|+|.+|+.++++. ++ ...+.+|||.+.-. . ......+||++++... -.+..++ ..+++++++++.+
T Consensus 1 P~sl~ea~~ll~~-------~~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL-~~I~~~~-~~l~IGA~vt~~~ 70 (264)
T TIGR03199 1 PAALDEAWSLLEK-------AP-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDEL-KGISTSD-THVSIGALTTLNE 70 (264)
T ss_pred CCCHHHHHHHHHh-------CC-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhh-CcEEecC-CEEEEecCCcHHH
Confidence 7899999887764 21 23578999987422 1 1224789999987543 1233333 6999999999999
Q ss_pred HHHH--HHhC--CC--c---cCCCCCCCceeecccccCC
Q 008291 195 ILHE--SVKY--GL--A---PKSWTDYLHLTVGGTLSNA 224 (571)
Q Consensus 195 l~~~--l~~~--Gl--~---~~~~~~~~~~tvGG~~~~~ 224 (571)
+.+. +.++ .| + .-+..--+..|+||+++++
T Consensus 71 l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 71 CRKNPLIKRALPCFVDAASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred HhhChHhHhHhHHHHHHHHHhcCHHHhcceecHHhccCc
Confidence 8642 1110 11 0 1223333578999999865
No 45
>PLN02906 xanthine dehydrogenase
Probab=92.61 E-value=0.4 Score=59.20 Aligned_cols=102 Identities=10% Similarity=0.012 Sum_probs=68.2
Q ss_pred CcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCC---CcCCCcEEEEcCCCCCC-eEEEeCCcceEEEEcC
Q 008291 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQ---AQAHQGVVINMESLQGP-KMQVYAENSFYVDVSG 188 (571)
Q Consensus 113 p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~---~~~~~givIdl~~l~~i-~i~i~~~~~~~v~v~a 188 (571)
..-.++|+|.+|+.++++.. .+ -++.+|||++... ......++||++++... .++.++ ..++++|
T Consensus 228 ~~~~~~P~tl~ea~~ll~~~------~~--a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~---~~l~IGA 296 (1319)
T PLN02906 228 GLTWYRPTSLQHLLELKAEY------PD--AKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKD---DGLEIGA 296 (1319)
T ss_pred CceEECcCCHHHHHHHHHhC------CC--CEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecC---CEEEEec
Confidence 34589999999998876531 12 3568899997422 12235789999986543 144433 6899999
Q ss_pred CCcHHHHHHHHHhCC---------Cc---------cCCCCCCCceeecccccCCc
Q 008291 189 GELWINILHESVKYG---------LA---------PKSWTDYLHLTVGGTLSNAG 225 (571)
Q Consensus 189 G~~~~~l~~~l~~~G---------l~---------~~~~~~~~~~tvGG~~~~~g 225 (571)
++++.++.+.|.+.= .+ .-+..--+..||||+|+|+.
T Consensus 297 ~vT~~el~~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~as 351 (1319)
T PLN02906 297 AVRLSELQNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTAS 351 (1319)
T ss_pred CCcHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCC
Confidence 999999988644320 01 12333346789999999864
No 46
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=89.77 E-value=0.69 Score=47.16 Aligned_cols=103 Identities=15% Similarity=0.100 Sum_probs=66.0
Q ss_pred CcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCC---cCCCcEEEEcCCCC-CCeEEEeCCcceEEEEcC
Q 008291 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQA---QAHQGVVINMESLQ-GPKMQVYAENSFYVDVSG 188 (571)
Q Consensus 113 p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~---~~~~givIdl~~l~-~i~i~i~~~~~~~v~v~a 188 (571)
+..+.+|.|.+|...+++. .+ -..+.+|||++..+- .....-+||+.++. ...+.. .+. ..++++|
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~-------~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~-~~g-~~l~IGA 72 (284)
T COG1319 3 NFEYYRPASVEEALNLLAR-------AP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVT-TEG-GSLRIGA 72 (284)
T ss_pred ceEEECCCCHHHHHHHHHh-------CC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEe-ecC-CEEEEee
Confidence 4568999999998877763 33 456888999976332 22356678988873 211222 233 5799999
Q ss_pred CCcHHHHHHHHHhCCCc---------cCCCCCCCceeecccccCCc
Q 008291 189 GELWINILHESVKYGLA---------PKSWTDYLHLTVGGTLSNAG 225 (571)
Q Consensus 189 G~~~~~l~~~l~~~Gl~---------~~~~~~~~~~tvGG~~~~~g 225 (571)
-+++.+|.+.-.-.... .-+..--+.+|+||++.++-
T Consensus 73 ~vt~~ei~~~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~ 118 (284)
T COG1319 73 LVTLTEIARHPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNAD 118 (284)
T ss_pred cccHHHHHhChhhhhhchHHHHHHHHhcChhhcceeeecchhccCC
Confidence 99999986433211111 22333345789999987664
No 47
>PLN00192 aldehyde oxidase
Probab=88.86 E-value=0.73 Score=57.01 Aligned_cols=107 Identities=9% Similarity=-0.041 Sum_probs=69.0
Q ss_pred CCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCC-CcCCCcEEEEcCCCCCC-eEEEeCCcceEEEEcCC
Q 008291 112 LPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQ-AQAHQGVVINMESLQGP-KMQVYAENSFYVDVSGG 189 (571)
Q Consensus 112 ~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~-~~~~~givIdl~~l~~i-~i~i~~~~~~~v~v~aG 189 (571)
...-.+.|.|.+|+.++++.... .+-.-.+..|||++.-. ......++||++++... .++.++ ..++++|+
T Consensus 232 ~~~~~~~P~sl~ea~~ll~~~~~----~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL~~I~~~~---~~l~IGA~ 304 (1344)
T PLN00192 232 SRYRWYTPVSVEELQSLLESNNF----DGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPELSMIRRDE---KGIEIGAV 304 (1344)
T ss_pred CCceEECcCCHHHHHHHHHhCCC----CCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhhhcEEecC---CEEEEeec
Confidence 34568999999999888763210 01124467889986422 22234789999986543 134433 68999999
Q ss_pred CcHHHHHHHHHhCC----Cc---------cCCCCCCCceeecccccCCc
Q 008291 190 ELWINILHESVKYG----LA---------PKSWTDYLHLTVGGTLSNAG 225 (571)
Q Consensus 190 ~~~~~l~~~l~~~G----l~---------~~~~~~~~~~tvGG~~~~~g 225 (571)
+++.++.+.+.+.- .+ .-+..--+..|+||+|+|+.
T Consensus 305 vTl~el~~~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~As 353 (1344)
T PLN00192 305 VTISKAIEALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMAQ 353 (1344)
T ss_pred CcHHHHHHHHHhhccccchHHHHHHHHHHhcChhhccceechhhhcccC
Confidence 99999987665431 11 11223335789999999874
No 48
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=88.64 E-value=0.64 Score=57.44 Aligned_cols=101 Identities=7% Similarity=0.001 Sum_probs=67.6
Q ss_pred cEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCC---CcCCCcEEEEcCCCCCCe-EEEeCCcceEEEEcCC
Q 008291 114 SAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQ---AQAHQGVVINMESLQGPK-MQVYAENSFYVDVSGG 189 (571)
Q Consensus 114 ~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~---~~~~~givIdl~~l~~i~-i~i~~~~~~~v~v~aG 189 (571)
.-.+.|.|.+|+.++++. +. .-++.+|||++.-. .......+||++++...+ ++.+ + ..++++|+
T Consensus 237 ~~~~~P~tl~ea~~ll~~-------~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~--~-~~l~IGA~ 305 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK-------YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHT--G-DGLTLGAG 305 (1330)
T ss_pred ceEECCCCHHHHHHHHHh-------CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEc--C-CEEEEecc
Confidence 468999999999988763 21 13467899997422 122335899999865441 3443 3 68999999
Q ss_pred CcHHHHHHHHHhC---------CCc---------cCCCCCCCceeecccccCCc
Q 008291 190 ELWINILHESVKY---------GLA---------PKSWTDYLHLTVGGTLSNAG 225 (571)
Q Consensus 190 ~~~~~l~~~l~~~---------Gl~---------~~~~~~~~~~tvGG~~~~~g 225 (571)
+++.++.+.|.+. ..+ .-+..--+..|+||+|.|+.
T Consensus 306 vT~~el~~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~as 359 (1330)
T TIGR02969 306 LSLAQVKDILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRH 359 (1330)
T ss_pred ccHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCC
Confidence 9999998864422 111 12333346789999999875
No 49
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=87.33 E-value=1.4 Score=45.86 Aligned_cols=144 Identities=12% Similarity=0.054 Sum_probs=78.5
Q ss_pred CCCCcEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCc---CCCcEEEEcCCCCCC-eEEEeCCcceEEE
Q 008291 110 QLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQ---AHQGVVINMESLQGP-KMQVYAENSFYVD 185 (571)
Q Consensus 110 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~---~~~givIdl~~l~~i-~i~i~~~~~~~v~ 185 (571)
..-...++.|.+.+|.+.++.. + -+. ++..|++.+.-.-. -+=..+|-..++... +|++.+ ..++
T Consensus 200 ~~~~~r~~~P~~l~D~a~l~aa--~----P~A--tivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~---~~l~ 268 (493)
T COG4630 200 GSGDDRFIVPATLADFADLLAA--H----PGA--TIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVST---GGLE 268 (493)
T ss_pred cCCCceeEeeccHHHHHHHHhh--C----CCC--EEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecC---CcEE
Confidence 3344568899999999988743 2 333 45556666542211 112334444444332 134444 7999
Q ss_pred EcCCCcHHHHHHHHHhCC-----CccC--CCCCCCceeecccccCCccCCCcccccCccccEEEEEEEecCCeEEEcCCC
Q 008291 186 VSGGELWINILHESVKYG-----LAPK--SWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEK 258 (571)
Q Consensus 186 v~aG~~~~~l~~~l~~~G-----l~~~--~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~levV~~~G~i~~~~~~ 258 (571)
+++|+++.+.++.|..+= |+.. +-.-.+..|+||+|+|+.-=+-+ +-.=-.++.++++-.|+-.+.-+-
T Consensus 269 iGAgvt~t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPIGDt----PPaLIALgA~ltLr~g~~~RtlPL 344 (493)
T COG4630 269 IGAGVTYTQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSPIGDT----PPALIALGATLTLRSGDGRRTLPL 344 (493)
T ss_pred EccCccHHHHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCcCCCC----CchhhhcCcEEEEEecCCcccccH
Confidence 999999999999888542 1111 11122456999999987411111 111123556666655543332221
Q ss_pred CCCchhHhhhcC
Q 008291 259 QNSELFHSVLGG 270 (571)
Q Consensus 259 ~~~dL~~~~~Gs 270 (571)
.|+|-++.--
T Consensus 345 --e~~Fi~Y~kq 354 (493)
T COG4630 345 --EDYFIAYGKQ 354 (493)
T ss_pred --HHHHHHhhhh
Confidence 1566665543
No 50
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=40.31 E-value=31 Score=34.89 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=10.3
Q ss_pred HhhhcCCCCCCCCCCCc
Q 008291 546 QRKSTYDPLAILAPGQR 562 (571)
Q Consensus 546 ~lK~~yDP~~ifnPG~~ 562 (571)
+-=++.||.|.||||-+
T Consensus 267 ~fY~~lDPtNsfNPGIG 283 (291)
T PF09330_consen 267 AFYRKLDPTNSFNPGIG 283 (291)
T ss_dssp HHHHHH-TT--BSTTTT
T ss_pred HHHHhcCCCcCCCCCcC
Confidence 33377899999999943
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=31.17 E-value=1.2e+02 Score=22.70 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=28.4
Q ss_pred CCceEEEEEEEeeeecCCceEEEEEEeCCHHHHHHHHHHH
Q 008291 272 GQFGIITRARISLEPAPDMVKWIRVLYSDFATFARDQEYL 311 (571)
Q Consensus 272 G~~GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~l 311 (571)
+.+|.|..+.+...+.........+.|.+.+++..+++.+
T Consensus 20 ~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l 59 (70)
T PF00076_consen 20 SQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEEL 59 (70)
T ss_dssp HTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHc
Confidence 3577777776666544555678889999988877666554
No 52
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=29.39 E-value=3.5e+02 Score=30.62 Aligned_cols=135 Identities=16% Similarity=0.251 Sum_probs=78.3
Q ss_pred CCC-HHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCCCCCcCCCcEEEEcCC--C--CCCeEEEeCCc-ceEEEEc-----
Q 008291 119 PNS-VSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMES--L--QGPKMQVYAEN-SFYVDVS----- 187 (571)
Q Consensus 119 P~s-~~dv~~~v~~a~~~~~~~~~~v~~rg~G~s~~g~~~~~~givIdl~~--l--~~i~i~i~~~~-~~~v~v~----- 187 (571)
|.+ .++|.+-++.+.+ .+-++...-.-.++...-.+ ..|+||-+. | +.-.+.=.++. ..+.-|=
T Consensus 308 p~~~~~eI~a~i~~~~~----~~P~laMVnSdkGITNLHvP-sDVIIDASMPAmIR~~GkmW~~dG~~~Dt~avIPD~sY 382 (741)
T TIGR00178 308 PAAQQEEIEADLQAVYA----QRPELAMVNSDKGITNLHVP-SDVIVDASMPAMIRASGKMWGPDGKLKDTKAVIPDRCY 382 (741)
T ss_pred ChhhHHHHHHHHHHHHh----hCCCEEEeccCCCccccCCC-cCeEEecCcHHHHhccCCccCCCCCcccceeecCCccc
Confidence 444 4679999999999 77788888777666666666 688898663 3 00001111110 0122221
Q ss_pred CCCcHHHHHHHHHhCCCc-cCCCCCCCceeecccccCCccC-CCcccccCccccE-----EEEEEEecCCeEEEcCCCCC
Q 008291 188 GGELWINILHESVKYGLA-PKSWTDYLHLTVGGTLSNAGIS-GQAFQHGPQISNV-----HQLEVVTGKGEIINCSEKQN 260 (571)
Q Consensus 188 aG~~~~~l~~~l~~~Gl~-~~~~~~~~~~tvGG~~~~~g~g-~~~~~~G~~~d~v-----~~levV~~~G~i~~~~~~~~ 260 (571)
+|+ .+++++.+.++|-+ |. | =|++.|.|.- ..+--||+---.. =.++||+.+|+++....-+.
T Consensus 383 A~v-Yq~~I~~ck~nGafDp~--------T-mGsV~NVGLMAqKAEEYGSHdkTFei~~~G~v~Vvd~~G~vl~eh~Ve~ 452 (741)
T TIGR00178 383 AGV-YQVVIEDCKQNGAFDPT--------T-MGTVPNVGLMAQKAEEYGSHDKTFQIPADGVVRVVDSSGEVLLEQSVEA 452 (741)
T ss_pred hHH-HHHHHHHHHhcCCCCcc--------c-ccCCcchhHhHHHHHHhcCCCcceecCCCceEEEEeCCCCEEEEeeccC
Confidence 232 46778888999976 32 2 3556666641 1233466431111 13778899999887665555
Q ss_pred CchhHhhh
Q 008291 261 SELFHSVL 268 (571)
Q Consensus 261 ~dL~~~~~ 268 (571)
-|+|++..
T Consensus 453 GDIwRmcq 460 (741)
T TIGR00178 453 GDIWRMCQ 460 (741)
T ss_pred Ccchhhhh
Confidence 67776643
No 53
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=28.76 E-value=67 Score=35.60 Aligned_cols=53 Identities=11% Similarity=0.339 Sum_probs=37.2
Q ss_pred cCCCeeecc---hhhh---HhhhccCccCCCCcEEEeCCCHHHHHHHHHHHHHhCCCC-CcEEEEE
Q 008291 88 TLDGHLNFD---EVHN---AARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHS-ELTVAAR 146 (571)
Q Consensus 88 ~~~g~v~~~---~~~~---~~~d~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~-~~~v~~r 146 (571)
.++|.++.. +++. +..+-+. .+.|-.++.|.|.++|.++++.|++ + ..||..+
T Consensus 123 ~I~gvvIsAGIP~le~A~ElI~~L~~--~G~~yv~fKPGtIeqI~svi~IAka----~P~~pIilq 182 (717)
T COG4981 123 PIDGVVISAGIPSLEEAVELIEELGD--DGFPYVAFKPGTIEQIRSVIRIAKA----NPTFPIILQ 182 (717)
T ss_pred CcceEEEecCCCcHHHHHHHHHHHhh--cCceeEEecCCcHHHHHHHHHHHhc----CCCCceEEE
Confidence 466766664 3333 3344332 5678899999999999999999998 4 3566653
No 54
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=21.68 E-value=5.6e+02 Score=23.60 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=28.7
Q ss_pred EEeCCCHHHHHHHHHHHHHhCCCCCcEEEEEc-CCCCCC
Q 008291 116 VLHPNSVSDIATTVKHIWEMGSHSELTVAARG-HGHSLQ 153 (571)
Q Consensus 116 vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~rg-~G~s~~ 153 (571)
-+.|+..+-++..+++++. +++||.+.. .|+++.
T Consensus 9 Evwprdys~ler~l~f~r~----~~~pVrvv~~ng~~f~ 43 (165)
T PF03614_consen 9 EVWPRDYSMLERRLQFWRF----NDIPVRVVSENGQVFC 43 (165)
T ss_pred ccCcchHHHHHHHHHHHHh----cCCceEEEecCCcEEE
Confidence 4899999999999999999 999998876 355543
No 55
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=21.27 E-value=1.2e+02 Score=27.73 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=26.9
Q ss_pred CCCC-cEEEeCCCHHHHHHHHHHHHHhCCCCCcEEEEE
Q 008291 110 QLLP-SAVLHPNSVSDIATTVKHIWEMGSHSELTVAAR 146 (571)
Q Consensus 110 ~~~p-~~vv~P~s~~dv~~~v~~a~~~~~~~~~~v~~r 146 (571)
+..| ..|+.|.+.+|+..++++|-+ .+-|+.+|
T Consensus 120 ~~iPg~~v~~Ps~~~~~~~ll~~a~~----~~~P~~ir 153 (156)
T cd07033 120 RAIPNMTVLRPADANETAAALEAALE----YDGPVYIR 153 (156)
T ss_pred cCCCCCEEEecCCHHHHHHHHHHHHh----CCCCEEEE
Confidence 3344 368999999999999999998 66688776
No 56
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=20.88 E-value=2.2e+02 Score=29.23 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=50.5
Q ss_pred CCCCcEEEeCCCHHHHHHHH------------------------HHHHHhCCC---CCcEEEEEcCCCCCCCCCcCCCcE
Q 008291 110 QLLPSAVLHPNSVSDIATTV------------------------KHIWEMGSH---SELTVAARGHGHSLQGQAQAHQGV 162 (571)
Q Consensus 110 ~~~p~~vv~P~s~~dv~~~v------------------------~~a~~~~~~---~~~~v~~rg~G~s~~g~~~~~~gi 162 (571)
.+.|.+||-|-+++|...+- |.|+++|+. .++-|+-.|||.|.... .+|-
T Consensus 121 ~gvPayIVDPvvVDEm~~~Ar~SG~p~i~RkSiFHALN~KAVarr~A~e~gk~yee~n~vVaHmGggiSV~ah---~~Gr 197 (358)
T COG3426 121 LGVPAYIVDPVVVDEMEDVARFSGIPEIERKSIFHALNQKAVARRAAKEVGKRYEEMNIVVAHMGGGISVGAH---KQGR 197 (358)
T ss_pred cCCCeeeeCceehhhcchhhhhcCCccchhHHHHHHhhHHHHHHHHHHHhccchhhheEEEEeccCceEEEEe---cCCc
Confidence 57899999999999987654 345555553 35556667777775432 3566
Q ss_pred EEEcCC-CCCCeEEEeCCcceEEEEcCCCcHHHHHHHHH
Q 008291 163 VINMES-LQGPKMQVYAENSFYVDVSGGELWINILHESV 200 (571)
Q Consensus 163 vIdl~~-l~~i~i~i~~~~~~~v~v~aG~~~~~l~~~l~ 200 (571)
+||..+ ++. ++. ....=.+.....|+.+.+.
T Consensus 198 vIDvnnaldg------eGP-fspersG~lP~~dlv~lcf 229 (358)
T COG3426 198 VIDVNNALDG------EGP-FSPERSGTLPTGDLVRLCF 229 (358)
T ss_pred EEeccCCCCC------CCC-CCcccCCCCChHHHHHHHh
Confidence 777654 221 121 3344456677788877665
Done!