Query 008294
Match_columns 571
No_of_seqs 394 out of 2927
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 21:59:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0465 Mitochondrial elongati 100.0 1.4E-98 3E-103 774.0 34.1 485 82-569 31-517 (721)
2 COG0480 FusA Translation elong 100.0 3.4E-96 7E-101 803.6 53.8 480 87-569 7-487 (697)
3 PRK00007 elongation factor G; 100.0 3.8E-88 8.3E-93 758.4 57.6 486 85-570 5-490 (693)
4 PRK12739 elongation factor G; 100.0 2.2E-87 4.8E-92 752.9 56.0 484 86-570 4-487 (691)
5 TIGR00484 EF-G translation elo 100.0 1E-86 2.2E-91 748.1 58.6 484 85-570 5-488 (689)
6 PRK13351 elongation factor G; 100.0 5.3E-84 1.2E-88 727.9 57.9 483 86-570 4-486 (687)
7 PRK00741 prfC peptide chain re 100.0 1.9E-81 4.2E-86 678.0 50.2 449 87-569 7-473 (526)
8 PRK12740 elongation factor G; 100.0 3.1E-78 6.7E-83 680.2 55.4 468 96-569 1-468 (668)
9 TIGR00503 prfC peptide chain r 100.0 2.4E-77 5.1E-82 646.4 50.2 452 86-569 7-474 (527)
10 PLN00116 translation elongatio 100.0 7.8E-76 1.7E-80 669.3 43.3 473 85-570 14-571 (843)
11 PTZ00416 elongation factor 2; 100.0 3.4E-75 7.3E-80 662.7 43.3 467 86-570 15-564 (836)
12 KOG0464 Elongation factor G [T 100.0 3.2E-77 6.9E-82 589.2 15.0 471 86-569 33-538 (753)
13 PRK07560 elongation factor EF- 100.0 8.7E-70 1.9E-74 613.4 40.0 434 86-570 16-472 (731)
14 TIGR00490 aEF-2 translation el 100.0 3.1E-69 6.6E-74 607.3 41.4 434 86-570 15-472 (720)
15 TIGR01394 TypA_BipA GTP-bindin 100.0 1.4E-66 3E-71 569.2 43.7 367 90-568 1-389 (594)
16 PRK10218 GTP-binding protein; 100.0 1.1E-65 2.3E-70 561.0 44.7 368 88-566 3-392 (607)
17 PRK05433 GTP-binding protein L 100.0 3.7E-64 8.1E-69 552.1 43.7 362 87-569 4-381 (600)
18 TIGR01393 lepA GTP-binding pro 100.0 2.8E-63 6E-68 544.7 45.1 360 89-569 2-377 (595)
19 COG4108 PrfC Peptide chain rel 100.0 1.3E-63 2.8E-68 498.8 29.9 454 88-569 10-475 (528)
20 KOG0469 Elongation factor 2 [T 100.0 2.7E-62 5.8E-67 492.8 23.8 469 86-569 15-569 (842)
21 COG1217 TypA Predicted membran 100.0 5E-59 1.1E-63 467.8 35.1 368 88-570 3-395 (603)
22 KOG0462 Elongation factor-type 100.0 1.5E-58 3.2E-63 473.2 29.3 369 83-570 53-434 (650)
23 COG0481 LepA Membrane GTPase L 100.0 2E-57 4.3E-62 457.7 32.1 364 85-569 4-383 (603)
24 cd01886 EF-G Elongation factor 100.0 1E-51 2.2E-56 412.9 31.3 270 92-362 1-270 (270)
25 KOG0468 U5 snRNP-specific prot 100.0 2.9E-51 6.4E-56 424.6 30.4 458 85-569 123-667 (971)
26 KOG0467 Translation elongation 100.0 1.5E-49 3.3E-54 419.3 25.1 467 84-568 3-550 (887)
27 cd04169 RF3 RF3 subfamily. Pe 100.0 1.6E-47 3.4E-52 382.4 29.5 263 89-362 1-267 (267)
28 cd04170 EF-G_bact Elongation f 100.0 1.8E-45 3.9E-50 370.1 30.8 268 92-362 1-268 (268)
29 cd04168 TetM_like Tet(M)-like 100.0 1.3E-44 2.8E-49 355.6 27.0 237 92-362 1-237 (237)
30 PLN03126 Elongation factor Tu; 100.0 4.7E-37 1E-41 328.5 33.5 274 86-475 77-377 (478)
31 CHL00071 tufA elongation facto 100.0 4.3E-37 9.4E-42 326.2 31.6 275 87-475 9-308 (409)
32 PRK12736 elongation factor Tu; 100.0 5.6E-37 1.2E-41 323.9 30.8 274 87-475 9-298 (394)
33 PRK05306 infB translation init 100.0 9.6E-37 2.1E-41 340.2 32.8 305 87-522 287-621 (787)
34 PLN00043 elongation factor 1-a 100.0 2.1E-36 4.6E-41 322.4 28.1 271 88-473 5-317 (447)
35 PTZ00141 elongation factor 1- 100.0 3.8E-36 8.2E-41 320.8 29.5 272 88-474 5-318 (446)
36 TIGR00485 EF-Tu translation el 100.0 5.6E-36 1.2E-40 316.7 30.0 273 87-474 9-297 (394)
37 PRK12735 elongation factor Tu; 100.0 2.2E-35 4.8E-40 311.9 30.5 274 87-475 9-300 (396)
38 PLN03127 Elongation factor Tu; 100.0 5E-35 1.1E-39 311.5 33.0 275 85-474 56-350 (447)
39 PRK12317 elongation factor 1-a 100.0 1.9E-35 4.1E-40 316.2 29.2 274 88-476 4-312 (425)
40 COG5256 TEF1 Translation elong 100.0 2.2E-35 4.8E-40 296.9 27.7 274 88-479 5-321 (428)
41 PRK00049 elongation factor Tu; 100.0 3.5E-35 7.5E-40 310.2 29.5 271 88-474 10-299 (396)
42 TIGR00487 IF-2 translation ini 100.0 3.9E-34 8.5E-39 312.8 33.7 304 88-522 85-419 (587)
43 TIGR02034 CysN sulfate adenyly 100.0 1.8E-34 3.8E-39 305.8 26.9 271 92-476 2-302 (406)
44 TIGR00483 EF-1_alpha translati 100.0 3.1E-34 6.8E-39 306.8 28.8 278 87-476 4-314 (426)
45 PRK05124 cysN sulfate adenylyl 100.0 1.4E-33 3E-38 303.3 28.0 277 87-476 24-330 (474)
46 COG0050 TufB GTPases - transla 100.0 1.2E-33 2.5E-38 270.3 20.5 274 87-474 9-297 (394)
47 CHL00189 infB translation init 100.0 7.3E-33 1.6E-37 306.4 28.8 298 87-515 241-569 (742)
48 KOG0460 Mitochondrial translat 100.0 2.6E-34 5.5E-39 279.6 14.7 273 88-475 52-342 (449)
49 PTZ00327 eukaryotic translatio 100.0 2.4E-32 5.2E-37 290.2 28.8 256 89-475 33-352 (460)
50 PRK10512 selenocysteinyl-tRNA- 100.0 3.9E-32 8.6E-37 299.3 28.0 251 92-474 2-260 (614)
51 PRK04000 translation initiatio 100.0 2.7E-31 5.9E-36 281.4 29.0 259 88-477 7-321 (411)
52 PRK05506 bifunctional sulfate 100.0 2.2E-31 4.7E-36 297.5 28.0 277 86-476 20-326 (632)
53 TIGR03680 eif2g_arch translati 100.0 1.3E-30 2.8E-35 276.5 30.1 256 89-475 3-314 (406)
54 TIGR00475 selB selenocysteine- 100.0 1.9E-30 4.1E-35 285.3 28.6 254 92-474 2-261 (581)
55 PF00009 GTP_EFTU: Elongation 100.0 2.1E-31 4.5E-36 253.8 15.9 145 88-232 1-147 (188)
56 KOG1145 Mitochondrial translat 100.0 2.5E-29 5.3E-34 258.4 24.4 303 87-520 150-503 (683)
57 COG0532 InfB Translation initi 100.0 6.6E-29 1.4E-33 258.6 27.7 301 89-520 4-338 (509)
58 COG3276 SelB Selenocysteine-sp 100.0 2.2E-29 4.7E-34 255.7 21.1 249 92-474 2-256 (447)
59 KOG0458 Elongation factor 1 al 100.0 1.4E-28 3E-33 256.1 26.2 279 85-476 172-493 (603)
60 PRK04004 translation initiatio 100.0 3.1E-28 6.8E-33 267.1 28.6 344 88-511 4-376 (586)
61 COG5258 GTPBP1 GTPase [General 100.0 6.3E-28 1.4E-32 238.4 22.7 289 87-479 114-442 (527)
62 COG2895 CysN GTPases - Sulfate 100.0 2.3E-28 4.9E-33 239.9 17.7 315 88-507 4-338 (431)
63 cd01885 EF2 EF2 (for archaea a 100.0 1.2E-27 2.5E-32 232.3 20.3 129 91-221 1-139 (222)
64 TIGR00491 aIF-2 translation in 100.0 1.3E-26 2.9E-31 253.1 29.4 330 89-511 3-374 (590)
65 COG5257 GCD11 Translation init 100.0 8.5E-27 1.8E-31 226.0 24.4 305 89-537 9-363 (415)
66 cd01884 EF_Tu EF-Tu subfamily. 99.9 6.4E-27 1.4E-31 223.3 19.5 128 90-220 2-131 (195)
67 cd01890 LepA LepA subfamily. 99.9 1.4E-24 3E-29 204.7 20.2 129 91-222 1-134 (179)
68 KOG0461 Selenocysteine-specifi 99.9 6.1E-25 1.3E-29 214.4 18.0 247 90-458 7-267 (522)
69 cd01883 EF1_alpha Eukaryotic e 99.9 4.7E-25 1E-29 215.1 15.3 130 92-221 1-151 (219)
70 PRK14845 translation initiatio 99.9 2E-23 4.2E-28 238.1 28.7 317 103-511 474-832 (1049)
71 cd04166 CysN_ATPS CysN_ATPS su 99.9 1E-24 2.2E-29 211.0 15.4 130 92-221 1-144 (208)
72 cd01891 TypA_BipA TypA (tyrosi 99.9 4.5E-24 9.7E-29 204.3 19.5 142 89-232 1-142 (194)
73 cd04167 Snu114p Snu114p subfam 99.9 4.7E-23 1E-27 200.2 19.5 130 91-220 1-136 (213)
74 cd01888 eIF2_gamma eIF2-gamma 99.9 2.3E-23 4.9E-28 200.9 16.0 116 91-221 1-151 (203)
75 cd01889 SelB_euk SelB subfamil 99.9 3.8E-23 8.3E-28 197.6 17.3 119 92-221 2-134 (192)
76 KOG0459 Polypeptide release fa 99.9 9.3E-24 2E-28 210.4 12.9 287 86-477 75-393 (501)
77 cd04165 GTPBP1_like GTPBP1-lik 99.9 1.3E-22 2.9E-27 197.7 16.5 141 92-236 1-168 (224)
78 cd00881 GTP_translation_factor 99.9 1.6E-21 3.5E-26 184.8 20.6 142 92-235 1-143 (189)
79 KOG0463 GTP-binding protein GP 99.9 2.1E-22 4.6E-27 198.5 13.5 281 91-475 134-457 (641)
80 PF14492 EFG_II: Elongation Fa 99.9 3.7E-22 8E-27 159.4 8.9 75 484-558 1-75 (75)
81 COG1160 Predicted GTPases [Gen 99.9 5.9E-21 1.3E-25 196.3 19.3 113 91-220 4-125 (444)
82 KOG1144 Translation initiation 99.9 1.3E-20 2.7E-25 199.3 19.6 241 89-427 474-737 (1064)
83 KOG1143 Predicted translation 99.9 6.1E-21 1.3E-25 188.2 15.8 285 91-474 168-491 (591)
84 cd04171 SelB SelB subfamily. 99.9 2.3E-20 4.9E-25 172.8 17.3 116 92-222 2-119 (164)
85 PF02421 FeoB_N: Ferrous iron 99.8 5.4E-20 1.2E-24 167.3 15.3 112 91-222 1-120 (156)
86 COG1159 Era GTPase [General fu 99.8 9.8E-20 2.1E-24 177.9 17.1 116 90-222 6-129 (298)
87 PRK09554 feoB ferrous iron tra 99.8 9.6E-20 2.1E-24 205.3 16.8 240 90-359 3-263 (772)
88 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3.7E-19 8.1E-24 165.5 17.9 114 91-222 1-117 (168)
89 TIGR00436 era GTP-binding prot 99.8 3.4E-18 7.3E-23 172.2 19.1 111 92-220 2-120 (270)
90 PRK15494 era GTPase Era; Provi 99.8 4E-18 8.7E-23 176.6 19.0 117 88-221 50-174 (339)
91 COG1160 Predicted GTPases [Gen 99.8 3.2E-18 7E-23 176.2 17.6 117 89-222 177-304 (444)
92 cd03690 Tet_II Tet_II: This su 99.8 1.1E-18 2.5E-23 143.3 11.3 84 388-472 2-85 (85)
93 cd04160 Arfrp1 Arfrp1 subfamil 99.8 3.5E-18 7.6E-23 159.0 15.4 116 92-221 1-121 (167)
94 cd01894 EngA1 EngA1 subfamily. 99.8 5E-18 1.1E-22 155.7 15.8 112 94-222 1-120 (157)
95 TIGR03594 GTPase_EngA ribosome 99.8 1.5E-17 3.3E-22 178.8 18.4 116 88-220 170-296 (429)
96 PRK00093 GTP-binding protein D 99.8 1.9E-17 4.2E-22 178.3 19.1 117 88-221 171-298 (435)
97 cd04154 Arl2 Arl2 subfamily. 99.8 1.5E-17 3.2E-22 156.0 15.9 112 89-221 13-129 (173)
98 cd04157 Arl6 Arl6 subfamily. 99.8 2E-17 4.3E-22 152.9 16.2 112 92-222 1-119 (162)
99 cd04092 mtEFG2_II_like mtEFG2_ 99.8 5.3E-18 1.2E-22 138.9 10.6 83 390-472 1-83 (83)
100 cd01895 EngA2 EngA2 subfamily. 99.8 3.5E-17 7.6E-22 152.4 17.6 116 90-222 2-128 (174)
101 PRK03003 GTP-binding protein D 99.7 2.1E-17 4.7E-22 179.0 17.5 117 88-221 36-160 (472)
102 cd01864 Rab19 Rab19 subfamily. 99.7 2E-17 4.4E-22 153.7 14.8 115 89-221 2-122 (165)
103 cd04151 Arl1 Arl1 subfamily. 99.7 2.8E-17 6.2E-22 151.7 15.2 110 92-222 1-115 (158)
104 cd04149 Arf6 Arf6 subfamily. 99.7 4.2E-17 9E-22 152.4 15.7 111 90-221 9-124 (168)
105 PRK00089 era GTPase Era; Revie 99.7 9.8E-17 2.1E-21 163.6 19.6 114 90-220 5-126 (292)
106 cd04124 RabL2 RabL2 subfamily. 99.7 4.9E-17 1.1E-21 150.7 15.7 113 92-220 2-117 (161)
107 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 6.7E-17 1.5E-21 151.9 16.9 111 90-221 15-130 (174)
108 TIGR03594 GTPase_EngA ribosome 99.7 2.4E-17 5.2E-22 177.3 15.5 113 92-221 1-121 (429)
109 cd03689 RF3_II RF3_II: this su 99.7 1.5E-17 3.3E-22 136.4 10.5 81 392-472 1-84 (85)
110 PRK03003 GTP-binding protein D 99.7 4.7E-17 1E-21 176.3 17.5 117 88-221 209-336 (472)
111 cd04145 M_R_Ras_like M-Ras/R-R 99.7 8.6E-17 1.9E-21 148.9 16.8 114 91-221 3-121 (164)
112 cd01897 NOG NOG1 is a nucleola 99.7 7.5E-17 1.6E-21 150.1 16.0 113 91-221 1-127 (168)
113 cd00878 Arf_Arl Arf (ADP-ribos 99.7 6.2E-17 1.3E-21 149.2 15.0 110 92-222 1-115 (158)
114 cd01898 Obg Obg subfamily. Th 99.7 1.1E-16 2.4E-21 149.3 16.5 112 92-221 2-128 (170)
115 cd04113 Rab4 Rab4 subfamily. 99.7 9.4E-17 2E-21 148.5 15.8 114 92-221 2-119 (161)
116 cd04150 Arf1_5_like Arf1-Arf5- 99.7 1.1E-16 2.4E-21 148.1 16.0 109 92-221 2-115 (159)
117 smart00177 ARF ARF-like small 99.7 1.4E-16 3.1E-21 149.8 16.8 111 90-221 13-128 (175)
118 smart00178 SAR Sar1p-like memb 99.7 1.1E-16 2.4E-21 151.8 16.0 113 88-221 15-132 (184)
119 cd04088 EFG_mtEFG_II EFG_mtEFG 99.7 3.2E-17 7E-22 134.4 10.6 83 390-472 1-83 (83)
120 cd04158 ARD1 ARD1 subfamily. 99.7 1.1E-16 2.5E-21 149.5 15.6 109 92-221 1-114 (169)
121 cd00879 Sar1 Sar1 subfamily. 99.7 9.8E-17 2.1E-21 152.8 15.2 112 89-221 18-134 (190)
122 cd01879 FeoB Ferrous iron tran 99.7 8.2E-17 1.8E-21 148.0 14.1 107 95-221 1-115 (158)
123 PRK15467 ethanolamine utilizat 99.7 7.1E-17 1.5E-21 149.2 13.4 101 91-222 2-106 (158)
124 cd01865 Rab3 Rab3 subfamily. 99.7 1.3E-16 2.9E-21 148.3 15.3 115 91-221 2-120 (165)
125 smart00173 RAS Ras subfamily o 99.7 1.7E-16 3.6E-21 147.2 15.8 113 92-221 2-119 (164)
126 PLN00223 ADP-ribosylation fact 99.7 2.6E-16 5.6E-21 148.9 17.3 112 90-222 17-133 (181)
127 cd04106 Rab23_lke Rab23-like s 99.7 1.9E-16 4.2E-21 146.3 16.0 114 92-221 2-120 (162)
128 PRK09518 bifunctional cytidyla 99.7 1.7E-16 3.7E-21 179.9 18.6 119 85-220 270-396 (712)
129 PRK04213 GTP-binding protein; 99.7 2E-16 4.3E-21 152.2 16.2 112 89-222 8-145 (201)
130 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 2.8E-16 6E-21 146.1 15.9 116 90-221 2-121 (166)
131 cd00877 Ran Ran (Ras-related n 99.7 2.1E-16 4.5E-21 147.4 15.1 113 92-220 2-117 (166)
132 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 2.5E-16 5.4E-21 149.3 15.8 114 91-221 4-123 (183)
133 cd04136 Rap_like Rap-like subf 99.7 3.4E-16 7.5E-21 144.7 16.4 114 91-221 2-120 (163)
134 COG0218 Predicted GTPase [Gene 99.7 3.9E-16 8.5E-21 145.0 16.5 136 83-237 17-166 (200)
135 cd01860 Rab5_related Rab5-rela 99.7 3.6E-16 7.7E-21 144.7 16.5 115 91-221 2-120 (163)
136 cd04163 Era Era subfamily. Er 99.7 9.3E-16 2E-20 141.4 19.2 114 90-220 3-124 (168)
137 PTZ00133 ADP-ribosylation fact 99.7 2.7E-16 5.9E-21 148.9 15.9 111 90-221 17-132 (182)
138 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 3.1E-16 6.7E-21 150.9 16.5 113 92-220 2-123 (201)
139 cd01867 Rab8_Rab10_Rab13_like 99.7 3.5E-16 7.7E-21 145.8 16.3 116 90-221 3-122 (167)
140 cd04138 H_N_K_Ras_like H-Ras/N 99.7 5.3E-16 1.1E-20 143.0 17.3 114 91-221 2-120 (162)
141 cd04091 mtEFG1_II_like mtEFG1_ 99.7 8.8E-17 1.9E-21 131.0 10.6 81 390-472 1-81 (81)
142 PRK00093 GTP-binding protein D 99.7 3.9E-16 8.4E-21 168.2 18.8 113 91-220 2-122 (435)
143 cd04119 RJL RJL (RabJ-Like) su 99.7 3.2E-16 7E-21 145.4 15.8 113 92-220 2-123 (168)
144 cd04122 Rab14 Rab14 subfamily. 99.7 3.2E-16 6.8E-21 145.9 15.6 116 90-221 2-121 (166)
145 cd04175 Rap1 Rap1 subgroup. T 99.7 5.7E-16 1.2E-20 143.7 17.2 114 91-221 2-120 (164)
146 cd04114 Rab30 Rab30 subfamily. 99.7 1.9E-16 4.2E-21 147.5 13.9 116 88-221 5-126 (169)
147 cd04120 Rab12 Rab12 subfamily. 99.7 4.1E-16 9E-21 149.8 16.5 114 92-221 2-119 (202)
148 PRK09518 bifunctional cytidyla 99.7 2.1E-16 4.5E-21 179.2 16.6 117 88-221 448-575 (712)
149 cd01866 Rab2 Rab2 subfamily. 99.7 4E-16 8.7E-21 145.6 15.7 116 90-221 4-123 (168)
150 PTZ00369 Ras-like protein; Pro 99.7 3.7E-16 8E-21 148.9 15.7 115 90-221 5-124 (189)
151 cd01862 Rab7 Rab7 subfamily. 99.7 4E-16 8.6E-21 145.6 15.5 114 92-221 2-123 (172)
152 cd01861 Rab6 Rab6 subfamily. 99.7 4.9E-16 1.1E-20 143.5 16.0 111 92-220 2-118 (161)
153 cd01863 Rab18 Rab18 subfamily. 99.7 3.8E-16 8.3E-21 144.3 15.1 113 92-220 2-119 (161)
154 smart00175 RAB Rab subfamily o 99.7 4.3E-16 9.3E-21 144.1 15.2 112 92-221 2-119 (164)
155 KOG0466 Translation initiation 99.7 6.4E-17 1.4E-21 156.2 9.4 247 89-463 37-342 (466)
156 cd04127 Rab27A Rab27a subfamil 99.7 5.8E-16 1.3E-20 146.0 15.9 117 89-221 3-134 (180)
157 TIGR03598 GTPase_YsxC ribosome 99.7 3.5E-16 7.6E-21 147.7 14.3 120 83-221 11-143 (179)
158 cd04164 trmE TrmE (MnmE, ThdF, 99.7 5.5E-16 1.2E-20 142.0 15.0 113 91-222 2-122 (157)
159 cd01868 Rab11_like Rab11-like. 99.7 7.7E-16 1.7E-20 142.9 16.1 116 90-221 3-122 (165)
160 cd04156 ARLTS1 ARLTS1 subfamil 99.7 7.3E-16 1.6E-20 142.3 15.4 109 92-221 1-115 (160)
161 cd04139 RalA_RalB RalA/RalB su 99.7 6.7E-16 1.5E-20 142.7 14.9 113 92-221 2-119 (164)
162 cd01878 HflX HflX subfamily. 99.7 1.6E-15 3.5E-20 146.2 17.9 117 88-222 39-168 (204)
163 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 1.3E-15 2.8E-20 141.7 16.3 110 93-222 2-114 (164)
164 cd04110 Rab35 Rab35 subfamily. 99.7 1.4E-15 2.9E-20 146.2 16.7 115 89-221 5-124 (199)
165 PLN03118 Rab family protein; P 99.7 1.9E-15 4E-20 146.7 17.7 118 87-221 11-134 (211)
166 KOG1423 Ras-like GTPase ERA [C 99.7 6.5E-16 1.4E-20 149.9 14.2 119 86-221 68-199 (379)
167 cd04147 Ras_dva Ras-dva subfam 99.7 7.6E-16 1.6E-20 147.9 14.6 111 92-221 1-118 (198)
168 cd04159 Arl10_like Arl10-like 99.7 1.5E-15 3.3E-20 138.9 16.0 110 93-222 2-116 (159)
169 cd04112 Rab26 Rab26 subfamily. 99.7 9E-16 1.9E-20 146.5 14.8 115 92-221 2-120 (191)
170 cd04176 Rap2 Rap2 subgroup. T 99.7 1.8E-15 3.8E-20 140.2 16.4 113 91-220 2-119 (163)
171 cd04161 Arl2l1_Arl13_like Arl2 99.7 1.4E-15 3E-20 142.0 15.7 110 92-222 1-115 (167)
172 cd04140 ARHI_like ARHI subfami 99.7 9.6E-16 2.1E-20 142.5 14.6 114 91-221 2-122 (165)
173 PRK12299 obgE GTPase CgtA; Rev 99.7 1.2E-15 2.7E-20 157.0 16.8 118 86-221 154-285 (335)
174 KOG0084 GTPase Rab1/YPT1, smal 99.7 9.1E-16 2E-20 140.4 13.9 120 87-222 6-129 (205)
175 cd04155 Arl3 Arl3 subfamily. 99.7 9.9E-16 2.1E-20 143.4 14.6 114 88-222 12-130 (173)
176 cd04121 Rab40 Rab40 subfamily. 99.7 1.9E-15 4E-20 143.8 16.6 118 88-221 4-124 (189)
177 cd04116 Rab9 Rab9 subfamily. 99.7 1.8E-15 4E-20 141.2 16.3 115 90-220 5-127 (170)
178 cd00154 Rab Rab family. Rab G 99.7 1.6E-15 3.5E-20 138.6 15.5 113 92-220 2-118 (159)
179 cd01893 Miro1 Miro1 subfamily. 99.7 1.9E-15 4.2E-20 140.7 16.2 113 92-222 2-118 (166)
180 TIGR02729 Obg_CgtA Obg family 99.7 1.4E-15 3.1E-20 156.5 16.7 119 85-221 152-287 (329)
181 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 1.6E-15 3.4E-20 142.3 15.7 114 91-221 3-121 (172)
182 cd04123 Rab21 Rab21 subfamily. 99.7 1.7E-15 3.6E-20 139.6 15.6 114 92-221 2-119 (162)
183 cd04115 Rab33B_Rab33A Rab33B/R 99.7 1.9E-15 4E-20 141.4 16.1 116 90-221 2-123 (170)
184 cd04144 Ras2 Ras2 subfamily. 99.7 1.5E-15 3.2E-20 144.9 15.7 113 92-221 1-120 (190)
185 PRK00454 engB GTP-binding prot 99.7 1.9E-15 4.2E-20 144.4 16.5 121 83-222 17-150 (196)
186 PLN03110 Rab GTPase; Provision 99.7 1.9E-15 4E-20 147.2 16.4 117 88-220 10-130 (216)
187 PLN03071 GTP-binding nuclear p 99.7 1.8E-15 4E-20 147.5 16.3 117 88-220 11-130 (219)
188 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 1.8E-15 3.8E-20 141.7 15.5 114 92-221 2-120 (170)
189 cd03691 BipA_TypA_II BipA_TypA 99.7 6.4E-16 1.4E-20 127.5 11.0 83 390-472 1-86 (86)
190 TIGR02528 EutP ethanolamine ut 99.7 4.7E-16 1E-20 140.7 11.0 97 92-221 2-102 (142)
191 PRK12298 obgE GTPase CgtA; Rev 99.7 1.7E-15 3.6E-20 159.1 16.3 117 87-221 156-289 (390)
192 cd04126 Rab20 Rab20 subfamily. 99.7 3.5E-15 7.5E-20 145.1 17.4 109 92-221 2-114 (220)
193 cd04177 RSR1 RSR1 subgroup. R 99.7 2.5E-15 5.3E-20 140.2 15.6 113 92-221 3-120 (168)
194 cd03699 lepA_II lepA_II: This 99.7 6.6E-16 1.4E-20 127.3 10.3 82 390-472 1-86 (86)
195 COG2229 Predicted GTPase [Gene 99.7 4.8E-15 1E-19 134.6 16.6 125 90-223 10-137 (187)
196 cd04146 RERG_RasL11_like RERG/ 99.7 1.7E-15 3.7E-20 140.7 14.2 112 92-220 1-119 (165)
197 cd04101 RabL4 RabL4 (Rab-like4 99.7 2.7E-15 5.9E-20 139.0 15.5 116 92-221 2-121 (164)
198 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.7 3.8E-15 8.1E-20 135.8 15.7 118 89-222 21-143 (221)
199 PRK05291 trmE tRNA modificatio 99.7 1.2E-15 2.6E-20 163.8 14.8 113 90-221 215-335 (449)
200 cd04109 Rab28 Rab28 subfamily. 99.7 3.3E-15 7.2E-20 145.4 16.6 112 92-221 2-123 (215)
201 TIGR03156 GTP_HflX GTP-binding 99.7 2.9E-15 6.4E-20 155.5 17.2 115 89-221 188-315 (351)
202 TIGR00231 small_GTP small GTP- 99.6 8.1E-16 1.7E-20 140.2 11.4 113 91-222 2-123 (161)
203 PRK12296 obgE GTPase CgtA; Rev 99.6 1.2E-15 2.7E-20 162.8 14.4 119 85-221 154-298 (500)
204 cd01874 Cdc42 Cdc42 subfamily. 99.6 7.7E-15 1.7E-19 138.0 18.0 114 91-221 2-119 (175)
205 cd04142 RRP22 RRP22 subfamily. 99.6 3.4E-15 7.4E-20 143.2 15.7 112 92-221 2-130 (198)
206 cd04137 RheB Rheb (Ras Homolog 99.6 4.7E-15 1E-19 139.8 16.2 113 91-220 2-119 (180)
207 COG0486 ThdF Predicted GTPase 99.6 3.2E-15 7E-20 154.6 16.1 119 86-222 213-339 (454)
208 KOG0078 GTP-binding protein SE 99.6 6.5E-15 1.4E-19 136.9 16.4 120 86-221 8-131 (207)
209 cd04135 Tc10 TC10 subfamily. 99.6 4.2E-15 9.2E-20 139.2 15.6 113 92-221 2-118 (174)
210 TIGR00450 mnmE_trmE_thdF tRNA 99.6 3.7E-15 8E-20 159.1 17.1 116 88-221 201-324 (442)
211 smart00176 RAN Ran (Ras-relate 99.6 2.6E-15 5.7E-20 144.0 14.4 109 96-220 1-112 (200)
212 PRK12297 obgE GTPase CgtA; Rev 99.6 4.5E-15 9.7E-20 156.7 17.4 117 86-220 154-287 (424)
213 cd00880 Era_like Era (E. coli 99.6 5.6E-15 1.2E-19 134.7 15.7 111 95-222 1-119 (163)
214 PF00025 Arf: ADP-ribosylation 99.6 3.4E-15 7.3E-20 140.4 14.5 114 88-222 12-130 (175)
215 COG0370 FeoB Fe2+ transport sy 99.6 4.4E-15 9.6E-20 159.8 17.0 111 91-221 4-122 (653)
216 cd01882 BMS1 Bms1. Bms1 is an 99.6 5.6E-16 1.2E-20 151.6 9.1 156 88-268 37-208 (225)
217 cd04118 Rab24 Rab24 subfamily. 99.6 5.9E-15 1.3E-19 140.9 16.0 115 92-221 2-119 (193)
218 cd00876 Ras Ras family. The R 99.6 7.1E-15 1.5E-19 135.1 15.8 111 92-221 1-118 (160)
219 cd04125 RabA_like RabA-like su 99.6 5.4E-15 1.2E-19 140.6 15.4 114 92-221 2-119 (188)
220 cd04128 Spg1 Spg1p. Spg1p (se 99.6 5.4E-15 1.2E-19 140.0 15.0 113 92-221 2-118 (182)
221 cd01892 Miro2 Miro2 subfamily. 99.6 5.8E-15 1.3E-19 138.0 14.9 119 88-221 2-122 (169)
222 cd04143 Rhes_like Rhes_like su 99.6 7.3E-15 1.6E-19 145.6 16.3 113 92-221 2-127 (247)
223 cd04132 Rho4_like Rho4-like su 99.6 9.3E-15 2E-19 138.8 16.2 113 92-221 2-119 (187)
224 cd01881 Obg_like The Obg-like 99.6 5.8E-15 1.2E-19 138.2 14.3 110 95-222 1-135 (176)
225 cd04134 Rho3 Rho3 subfamily. 99.6 9.2E-15 2E-19 139.3 15.8 115 91-222 1-119 (189)
226 PLN03108 Rab family protein; P 99.6 1.2E-14 2.7E-19 140.8 16.7 117 89-221 5-125 (210)
227 cd04117 Rab15 Rab15 subfamily. 99.6 1.4E-14 3.1E-19 134.2 16.4 114 92-221 2-119 (161)
228 cd00157 Rho Rho (Ras homology) 99.6 7.8E-15 1.7E-19 136.7 14.5 114 92-222 2-119 (171)
229 cd04111 Rab39 Rab39 subfamily. 99.6 1E-14 2.2E-19 141.5 15.5 115 91-221 3-123 (211)
230 cd01875 RhoG RhoG subfamily. 99.6 1.4E-14 3E-19 138.3 16.0 114 91-221 4-121 (191)
231 cd01871 Rac1_like Rac1-like su 99.6 1.4E-14 3.1E-19 136.1 15.5 114 91-221 2-119 (174)
232 KOG0092 GTPase Rab5/YPT51 and 99.6 8.1E-15 1.7E-19 133.8 13.1 116 90-221 5-124 (200)
233 cd04133 Rop_like Rop subfamily 99.6 1.4E-14 3E-19 136.2 15.2 114 91-221 2-119 (176)
234 smart00174 RHO Rho (Ras homolo 99.6 1.3E-14 2.9E-19 135.8 14.6 112 93-221 1-116 (174)
235 PRK11058 GTPase HflX; Provisio 99.6 2.3E-14 5E-19 152.2 18.0 115 89-221 196-323 (426)
236 TIGR00437 feoB ferrous iron tr 99.6 9.8E-15 2.1E-19 161.4 15.4 105 97-221 1-113 (591)
237 cd01870 RhoA_like RhoA-like su 99.6 1.4E-14 3E-19 135.8 14.1 114 91-221 2-119 (175)
238 cd03700 eEF2_snRNP_like_II EF2 99.6 6.1E-15 1.3E-19 123.4 9.8 82 390-471 1-92 (93)
239 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 3.7E-14 7.9E-19 134.2 16.3 114 90-220 5-122 (182)
240 cd04130 Wrch_1 Wrch-1 subfamil 99.6 3.3E-14 7.2E-19 133.3 15.4 113 92-221 2-118 (173)
241 cd04090 eEF2_II_snRNP Loc2 eEF 99.6 1.6E-14 3.5E-19 121.0 10.5 80 390-469 1-90 (94)
242 cd04131 Rnd Rnd subfamily. Th 99.6 6.5E-14 1.4E-18 132.1 15.3 114 91-221 2-119 (178)
243 cd04148 RGK RGK subfamily. Th 99.6 5.8E-14 1.3E-18 137.1 15.3 113 92-221 2-120 (221)
244 cd01876 YihA_EngB The YihA (En 99.6 1.1E-13 2.4E-18 127.9 16.3 110 93-221 2-124 (170)
245 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 9.2E-14 2E-18 136.0 16.2 115 90-221 13-131 (232)
246 PF10662 PduV-EutP: Ethanolami 99.6 2.9E-14 6.2E-19 127.0 11.1 97 91-220 2-102 (143)
247 cd00882 Ras_like_GTPase Ras-li 99.5 7.5E-14 1.6E-18 125.6 12.3 109 95-222 1-117 (157)
248 KOG0080 GTPase Rab18, small G 99.5 1.1E-13 2.3E-18 122.0 12.1 116 90-221 11-131 (209)
249 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 2.3E-13 4.9E-18 132.5 15.8 114 91-221 2-119 (222)
250 KOG0098 GTPase Rab2, small G p 99.5 1.5E-13 3.3E-18 124.3 12.9 117 90-222 6-126 (216)
251 PTZ00132 GTP-binding nuclear p 99.5 4.2E-13 9E-18 130.6 17.1 116 89-220 8-126 (215)
252 cd04103 Centaurin_gamma Centau 99.5 5.3E-13 1.1E-17 123.4 16.2 106 92-220 2-112 (158)
253 PF01926 MMR_HSR1: 50S ribosom 99.5 1.9E-13 4.2E-18 119.3 12.5 106 92-216 1-116 (116)
254 KOG1489 Predicted GTP-binding 99.5 2.3E-13 4.9E-18 133.3 13.9 119 86-222 192-327 (366)
255 cd01896 DRG The developmentall 99.5 4E-13 8.6E-18 132.1 15.8 147 92-260 2-171 (233)
256 KOG0073 GTP-binding ADP-ribosy 99.5 3.2E-13 6.9E-18 119.8 13.3 114 88-222 14-132 (185)
257 KOG0087 GTPase Rab11/YPT3, sma 99.5 2.4E-13 5.2E-18 125.9 12.0 120 86-221 10-133 (222)
258 cd04105 SR_beta Signal recogni 99.5 3E-13 6.5E-18 130.3 13.2 114 91-223 1-125 (203)
259 cd01873 RhoBTB RhoBTB subfamil 99.5 5.7E-13 1.2E-17 127.4 14.9 67 153-221 64-134 (195)
260 KOG0394 Ras-related GTPase [Ge 99.5 1.6E-13 3.5E-18 123.9 10.2 117 89-221 8-132 (210)
261 PF00071 Ras: Ras family; Int 99.5 7.1E-13 1.5E-17 122.5 14.3 114 92-221 1-118 (162)
262 KOG0075 GTP-binding ADP-ribosy 99.5 3E-13 6.6E-18 117.4 10.7 112 91-222 21-137 (186)
263 KOG0093 GTPase Rab3, small G p 99.5 8.2E-13 1.8E-17 114.7 13.3 117 90-222 21-141 (193)
264 cd04129 Rho2 Rho2 subfamily. 99.5 7.4E-13 1.6E-17 125.9 13.8 114 91-221 2-119 (187)
265 KOG0070 GTP-binding ADP-ribosy 99.5 3.9E-13 8.5E-18 122.5 10.8 114 88-222 15-133 (181)
266 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 1.1E-12 2.3E-17 125.8 14.6 114 91-221 1-130 (196)
267 COG3596 Predicted GTPase [Gene 99.5 1.6E-12 3.5E-17 125.7 15.6 118 87-221 36-162 (296)
268 COG2262 HflX GTPases [General 99.4 2.5E-12 5.5E-17 131.0 16.2 120 85-222 187-319 (411)
269 cd04104 p47_IIGP_like p47 (47- 99.4 2.7E-12 5.9E-17 123.1 15.2 114 91-221 2-121 (197)
270 PRK09866 hypothetical protein; 99.4 2.3E-12 5E-17 138.3 16.0 68 154-221 229-303 (741)
271 KOG0086 GTPase Rab4, small G p 99.4 2.3E-12 5E-17 112.5 12.2 118 89-222 8-129 (214)
272 COG1084 Predicted GTPase [Gene 99.4 3.4E-12 7.3E-17 126.3 13.2 116 89-222 167-295 (346)
273 cd04102 RabL3 RabL3 (Rab-like3 99.4 5.3E-12 1.2E-16 121.2 14.4 115 92-222 2-144 (202)
274 KOG0079 GTP-binding protein H- 99.4 3.4E-12 7.4E-17 111.0 11.6 116 91-222 9-127 (198)
275 PRK13768 GTPase; Provisional 99.4 1.1E-11 2.3E-16 123.5 15.8 69 154-222 96-177 (253)
276 KOG0095 GTPase Rab30, small G 99.4 6.7E-12 1.4E-16 109.2 12.4 119 88-222 5-127 (213)
277 PLN00023 GTP-binding protein; 99.4 6.6E-12 1.4E-16 126.7 14.3 122 85-222 16-166 (334)
278 cd01850 CDC_Septin CDC/Septin. 99.3 1.4E-11 3E-16 124.1 14.7 139 90-237 4-174 (276)
279 KOG1191 Mitochondrial GTPase [ 99.3 8.4E-12 1.8E-16 129.0 12.4 116 88-220 266-402 (531)
280 PF09439 SRPRB: Signal recogni 99.3 5.4E-12 1.2E-16 117.5 9.4 112 90-224 3-129 (181)
281 KOG0088 GTPase Rab21, small G 99.3 1.9E-12 4.1E-17 113.8 5.7 117 90-222 13-133 (218)
282 PF08477 Miro: Miro-like prote 99.3 3.3E-12 7.1E-17 111.8 7.0 113 92-218 1-119 (119)
283 KOG1532 GTPase XAB1, interacts 99.3 2.3E-11 4.9E-16 116.8 13.0 137 87-223 16-197 (366)
284 COG0536 Obg Predicted GTPase [ 99.3 1.6E-11 3.5E-16 122.0 11.5 117 87-221 156-289 (369)
285 KOG0071 GTP-binding ADP-ribosy 99.3 1E-10 2.3E-15 101.0 12.8 123 90-236 17-144 (180)
286 PRK09435 membrane ATPase/prote 99.3 1.2E-10 2.5E-15 119.3 15.6 140 88-234 54-222 (332)
287 cd01899 Ygr210 Ygr210 subfamil 99.3 1.4E-10 3.1E-15 118.6 16.1 88 93-190 1-111 (318)
288 COG1100 GTPase SAR1 and relate 99.2 1.8E-10 3.9E-15 112.0 15.2 115 91-223 6-127 (219)
289 KOG0076 GTP-binding ADP-ribosy 99.2 2.8E-11 6E-16 108.6 8.2 120 90-222 17-141 (197)
290 COG1163 DRG Predicted GTPase [ 99.2 7.5E-11 1.6E-15 116.3 10.7 204 90-359 63-288 (365)
291 KOG0083 GTPase Rab26/Rab37, sm 99.2 1.3E-11 2.8E-16 105.5 4.5 112 95-221 2-117 (192)
292 PF03029 ATP_bind_1: Conserved 99.2 7.4E-11 1.6E-15 116.0 10.4 129 95-223 1-172 (238)
293 KOG0097 GTPase Rab14, small G 99.2 2.5E-10 5.5E-15 98.5 12.0 120 86-221 7-130 (215)
294 PTZ00099 rab6; Provisional 99.2 1.5E-10 3.3E-15 108.8 11.8 69 153-221 27-99 (176)
295 KOG0395 Ras-related GTPase [Ge 99.2 2.8E-10 6E-15 108.6 13.3 115 90-221 3-122 (196)
296 TIGR00073 hypB hydrogenase acc 99.2 6.7E-10 1.4E-14 107.4 15.3 127 86-221 18-162 (207)
297 KOG0090 Signal recognition par 99.1 4.9E-10 1.1E-14 104.3 12.8 119 90-229 38-167 (238)
298 KOG0072 GTP-binding ADP-ribosy 99.1 1E-10 2.3E-15 101.5 7.0 113 89-222 17-134 (182)
299 KOG0081 GTPase Rab27, small G 99.1 1.7E-10 3.7E-15 101.7 8.3 116 91-222 10-139 (219)
300 KOG0091 GTPase Rab39, small G 99.1 1.3E-09 2.9E-14 96.6 13.4 115 91-222 9-131 (213)
301 PF03308 ArgK: ArgK protein; 99.1 7E-10 1.5E-14 107.6 12.5 126 89-223 28-183 (266)
302 COG4917 EutP Ethanolamine util 99.1 2.8E-10 6.1E-15 96.7 8.3 99 91-221 2-104 (148)
303 KOG0074 GTP-binding ADP-ribosy 99.1 4.9E-10 1.1E-14 97.0 9.8 115 87-222 14-134 (185)
304 PRK09602 translation-associate 99.1 2.4E-09 5.2E-14 112.9 16.6 82 91-190 2-114 (396)
305 PF03144 GTP_EFTU_D2: Elongati 99.1 8.5E-11 1.9E-15 93.9 4.3 68 404-471 1-74 (74)
306 cd01853 Toc34_like Toc34-like 99.1 2.2E-09 4.8E-14 106.2 15.0 119 86-221 27-163 (249)
307 smart00053 DYNc Dynamin, GTPas 99.1 1.3E-09 2.8E-14 106.7 12.4 70 154-223 124-208 (240)
308 TIGR02836 spore_IV_A stage IV 99.0 3.8E-09 8.1E-14 108.5 13.6 151 90-242 17-215 (492)
309 cd03693 EF1_alpha_II EF1_alpha 99.0 3.4E-09 7.4E-14 88.2 10.6 85 387-475 2-90 (91)
310 TIGR00750 lao LAO/AO transport 99.0 1.6E-08 3.5E-13 103.3 16.5 128 88-222 32-187 (300)
311 cd03698 eRF3_II_like eRF3_II_l 98.9 6E-09 1.3E-13 85.2 9.9 79 389-472 1-83 (83)
312 COG1703 ArgK Putative periplas 98.9 2.1E-08 4.5E-13 98.6 14.7 128 89-223 50-205 (323)
313 KOG4252 GTP-binding protein [S 98.9 6.5E-10 1.4E-14 100.0 3.7 121 86-222 16-139 (246)
314 TIGR00101 ureG urease accessor 98.9 2.2E-08 4.8E-13 96.0 14.2 61 154-221 91-151 (199)
315 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 2.5E-08 5.4E-13 97.2 13.2 127 92-235 1-140 (232)
316 PF00350 Dynamin_N: Dynamin fa 98.9 5.6E-09 1.2E-13 97.1 7.9 65 153-217 99-168 (168)
317 TIGR00991 3a0901s02IAP34 GTP-b 98.9 4.5E-08 9.8E-13 98.5 14.7 116 88-220 36-166 (313)
318 cd01342 Translation_Factor_II_ 98.9 1.7E-08 3.7E-13 81.3 9.4 78 390-471 1-82 (83)
319 COG5019 CDC3 Septin family pro 98.8 5.8E-08 1.3E-12 98.1 14.8 151 90-249 23-205 (373)
320 PRK09601 GTP-binding protein Y 98.8 2.1E-07 4.6E-12 96.1 19.4 81 91-189 3-107 (364)
321 PF05049 IIGP: Interferon-indu 98.8 3.1E-08 6.6E-13 102.3 12.7 110 90-219 35-153 (376)
322 PF04548 AIG1: AIG1 family; I 98.8 8.6E-08 1.9E-12 93.0 13.4 115 91-222 1-131 (212)
323 KOG0077 Vesicle coat complex C 98.8 1.6E-08 3.6E-13 90.3 7.5 115 88-223 18-137 (193)
324 PF00735 Septin: Septin; Inte 98.8 8E-08 1.7E-12 96.9 13.2 140 90-238 4-174 (281)
325 COG5192 BMS1 GTP-binding prote 98.8 5.6E-08 1.2E-12 101.6 12.1 153 90-268 69-238 (1077)
326 PRK10463 hydrogenase nickel in 98.8 8.8E-08 1.9E-12 95.8 12.9 128 86-221 100-244 (290)
327 cd04089 eRF3_II eRF3_II: domai 98.7 1.1E-07 2.4E-12 77.4 10.0 78 389-472 1-82 (82)
328 KOG2486 Predicted GTPase [Gene 98.7 7.5E-08 1.6E-12 93.4 9.7 119 85-221 131-262 (320)
329 KOG0393 Ras-related small GTPa 98.7 6.5E-08 1.4E-12 90.8 9.1 112 90-220 4-122 (198)
330 PTZ00258 GTP-binding protein; 98.7 1.2E-07 2.6E-12 99.1 10.8 84 88-189 19-126 (390)
331 KOG0052 Translation elongation 98.7 8.9E-09 1.9E-13 104.7 2.2 130 88-221 5-156 (391)
332 cd01900 YchF YchF subfamily. 98.6 9.1E-08 2E-12 95.7 8.7 79 93-189 1-103 (274)
333 cd03695 CysN_NodQ_II CysN_NodQ 98.6 2.8E-07 6.1E-12 74.8 9.8 78 390-471 1-80 (81)
334 KOG2655 Septin family protein 98.6 4.9E-07 1.1E-11 92.2 13.3 146 90-245 21-197 (366)
335 cd03696 selB_II selB_II: this 98.6 2.5E-07 5.4E-12 75.6 9.2 78 390-471 1-82 (83)
336 KOG1547 Septin CDC10 and relat 98.6 2.1E-06 4.4E-11 81.6 16.2 140 90-239 46-217 (336)
337 cd03697 EFTU_II EFTU_II: Elong 98.6 2.7E-07 5.9E-12 76.1 9.3 80 390-473 1-86 (87)
338 KOG1490 GTP-binding protein CR 98.6 1.4E-07 3.1E-12 98.0 9.1 117 87-221 165-295 (620)
339 KOG3883 Ras family small GTPas 98.6 1.1E-06 2.4E-11 77.6 13.0 115 89-221 8-132 (198)
340 cd01859 MJ1464 MJ1464. This f 98.6 2.5E-07 5.4E-12 85.1 9.6 51 170-220 4-54 (156)
341 cd03694 GTPBP_II Domain II of 98.6 4.8E-07 1E-11 74.5 10.0 79 390-472 1-87 (87)
342 KOG0410 Predicted GTP binding 98.6 3.3E-07 7.1E-12 90.6 10.4 115 88-220 176-307 (410)
343 COG0378 HypB Ni2+-binding GTPa 98.5 8.9E-07 1.9E-11 82.2 11.9 124 90-221 13-156 (202)
344 TIGR00993 3a0901s04IAP86 chlor 98.4 5.5E-06 1.2E-10 90.3 15.3 119 86-221 114-250 (763)
345 KOG0096 GTPase Ran/TC4/GSP1 (n 98.3 9.9E-07 2.1E-11 80.8 6.1 117 89-221 9-128 (216)
346 cd01858 NGP_1 NGP-1. Autoanti 98.3 2.8E-06 6.1E-11 78.2 9.4 50 172-221 2-53 (157)
347 cd03112 CobW_like The function 98.3 5.3E-06 1.2E-10 76.5 11.1 125 92-219 2-158 (158)
348 KOG1486 GTP-binding protein DR 98.3 6.2E-06 1.4E-10 78.8 10.8 203 91-360 63-288 (364)
349 PRK14722 flhF flagellar biosyn 98.3 4.3E-06 9.3E-11 87.1 10.6 130 88-220 135-294 (374)
350 TIGR01425 SRP54_euk signal rec 98.2 9.9E-06 2.2E-10 85.7 12.7 129 90-220 100-252 (429)
351 KOG3886 GTP-binding protein [S 98.2 1.8E-06 4E-11 81.5 6.3 122 89-227 3-136 (295)
352 cd03692 mtIF2_IVc mtIF2_IVc: t 98.2 1.1E-05 2.4E-10 65.9 10.2 75 392-470 3-82 (84)
353 COG0523 Putative GTPases (G3E 98.2 6.9E-06 1.5E-10 84.1 11.1 143 90-235 1-173 (323)
354 cd03114 ArgK-like The function 98.2 1.1E-05 2.4E-10 73.5 11.1 59 153-218 90-148 (148)
355 cd01856 YlqF YlqF. Proteins o 98.2 5.2E-06 1.1E-10 77.7 8.2 57 162-220 2-59 (171)
356 PRK11537 putative GTP-binding 98.2 1.4E-05 3.1E-10 82.0 12.0 143 89-233 3-175 (318)
357 KOG1673 Ras GTPases [General f 98.2 9.4E-06 2E-10 71.9 8.9 115 90-220 20-137 (205)
358 cd01855 YqeH YqeH. YqeH is an 98.2 6.3E-06 1.4E-10 78.5 8.2 55 165-221 21-75 (190)
359 KOG1954 Endocytosis/signaling 98.2 1.5E-05 3.2E-10 80.3 10.8 144 88-232 56-237 (532)
360 PRK10416 signal recognition pa 98.2 5E-05 1.1E-09 78.0 15.2 130 89-220 113-272 (318)
361 cd03115 SRP The signal recogni 98.1 2.1E-05 4.5E-10 73.6 11.4 67 153-221 81-153 (173)
362 TIGR03596 GTPase_YlqF ribosome 98.1 6.5E-06 1.4E-10 83.2 8.4 56 163-220 5-61 (276)
363 TIGR00064 ftsY signal recognit 98.1 3.2E-05 7E-10 77.8 13.3 131 88-220 70-230 (272)
364 PF00448 SRP54: SRP54-type pro 98.1 1.6E-05 3.4E-10 76.0 9.9 127 91-220 2-153 (196)
365 PF03193 DUF258: Protein of un 98.1 1.8E-06 4E-11 79.0 3.3 65 91-168 36-100 (161)
366 cd01858 NGP_1 NGP-1. Autoanti 98.1 6.4E-06 1.4E-10 75.9 6.5 56 90-165 102-157 (157)
367 TIGR02475 CobW cobalamin biosy 98.1 5.1E-05 1.1E-09 78.8 14.0 144 89-235 3-202 (341)
368 PF02492 cobW: CobW/HypB/UreG, 98.1 1.7E-05 3.7E-10 74.7 9.5 140 91-233 1-169 (178)
369 cd03110 Fer4_NifH_child This p 98.1 6.5E-05 1.4E-09 70.7 13.5 68 153-222 91-158 (179)
370 PRK10867 signal recognition pa 98.1 0.00026 5.6E-09 75.5 19.4 144 89-237 99-268 (433)
371 KOG0448 Mitofusin 1 GTPase, in 98.1 3.1E-05 6.7E-10 83.8 12.0 134 88-222 107-276 (749)
372 cd01849 YlqF_related_GTPase Yl 98.1 1.3E-05 2.8E-10 73.7 8.0 42 180-221 1-43 (155)
373 PRK00771 signal recognition pa 98.1 0.0003 6.6E-09 75.1 19.3 128 88-220 93-245 (437)
374 PRK14974 cell division protein 98.0 3.5E-05 7.6E-10 79.5 11.5 129 89-220 139-292 (336)
375 KOG1707 Predicted Ras related/ 98.0 2.8E-05 6.1E-10 82.8 10.6 115 90-222 9-130 (625)
376 cd04178 Nucleostemin_like Nucl 98.0 9.8E-06 2.1E-10 75.8 6.2 58 88-165 115-172 (172)
377 cd01851 GBP Guanylate-binding 98.0 4.4E-05 9.5E-10 74.6 11.0 91 88-190 5-103 (224)
378 TIGR03597 GTPase_YqeH ribosome 98.0 7.4E-06 1.6E-10 85.9 5.9 131 91-237 155-297 (360)
379 KOG1534 Putative transcription 98.0 3.9E-05 8.4E-10 71.8 9.7 69 154-222 97-179 (273)
380 PRK11889 flhF flagellar biosyn 98.0 5.2E-05 1.1E-09 78.7 11.3 131 89-221 240-391 (436)
381 cd01855 YqeH YqeH. YqeH is an 98.0 7.6E-06 1.7E-10 77.9 4.7 62 91-165 128-190 (190)
382 cd01849 YlqF_related_GTPase Yl 97.9 1.3E-05 2.8E-10 73.6 5.7 58 88-165 98-155 (155)
383 PRK09563 rbgA GTPase YlqF; Rev 97.9 2E-05 4.3E-10 80.1 7.4 57 162-220 7-64 (287)
384 PRK12727 flagellar biosynthesi 97.9 8.9E-05 1.9E-09 79.8 12.5 131 88-220 348-497 (559)
385 COG3640 CooC CO dehydrogenase 97.9 0.00011 2.4E-09 70.4 11.0 64 154-220 133-198 (255)
386 PRK12288 GTPase RsgA; Reviewed 97.9 1.7E-05 3.7E-10 82.4 6.1 64 92-168 207-270 (347)
387 TIGR00959 ffh signal recogniti 97.9 0.0012 2.5E-08 70.5 20.1 144 89-237 98-267 (428)
388 cd02036 MinD Bacterial cell di 97.9 0.00025 5.3E-09 66.4 13.4 81 156-238 64-145 (179)
389 TIGR03596 GTPase_YlqF ribosome 97.9 8.5E-05 1.8E-09 75.1 10.8 57 89-165 117-173 (276)
390 COG0012 Predicted GTPase, prob 97.9 4.4E-05 9.6E-10 78.1 8.2 82 91-190 3-109 (372)
391 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 2.6E-05 5.7E-10 70.4 6.0 56 91-166 84-139 (141)
392 cd03702 IF2_mtIF2_II This fami 97.9 9.8E-05 2.1E-09 61.5 8.8 76 391-471 2-78 (95)
393 PRK09563 rbgA GTPase YlqF; Rev 97.8 5.8E-05 1.2E-09 76.7 8.7 60 88-167 119-178 (287)
394 cd03688 eIF2_gamma_II eIF2_gam 97.8 0.00011 2.4E-09 62.1 8.8 81 386-470 2-104 (113)
395 COG1162 Predicted GTPases [Gen 97.8 1.7E-05 3.7E-10 79.2 4.4 65 91-168 165-229 (301)
396 PRK12726 flagellar biosynthesi 97.8 0.00021 4.5E-09 74.1 12.4 129 88-220 204-355 (407)
397 KOG2743 Cobalamin synthesis pr 97.8 0.00021 4.6E-09 70.3 11.0 153 83-235 50-240 (391)
398 TIGR00092 GTP-binding protein 97.8 9.5E-05 2.1E-09 76.7 9.2 82 91-190 3-109 (368)
399 TIGR00157 ribosome small subun 97.8 3.7E-05 8E-10 76.2 6.0 64 91-168 121-184 (245)
400 cd01856 YlqF YlqF. Proteins o 97.8 4.8E-05 1E-09 71.1 6.2 58 88-165 113-170 (171)
401 COG0541 Ffh Signal recognition 97.7 0.003 6.5E-08 65.9 18.9 212 88-331 98-342 (451)
402 PRK14721 flhF flagellar biosyn 97.7 0.00031 6.7E-09 74.5 12.1 130 89-220 190-339 (420)
403 PRK12289 GTPase RsgA; Reviewed 97.7 0.00017 3.6E-09 75.1 9.7 47 175-221 86-134 (352)
404 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 0.00015 3.3E-09 65.4 8.1 52 170-221 3-56 (141)
405 PRK12289 GTPase RsgA; Reviewed 97.7 4.7E-05 1E-09 79.1 5.3 64 92-168 174-237 (352)
406 KOG1533 Predicted GTPase [Gene 97.7 0.00042 9.1E-09 66.1 11.0 129 93-221 5-177 (290)
407 KOG1487 GTP-binding protein DR 97.6 8.2E-05 1.8E-09 71.7 5.9 86 91-194 60-152 (358)
408 TIGR00157 ribosome small subun 97.6 0.00013 2.9E-09 72.3 7.7 50 172-221 30-81 (245)
409 PRK13796 GTPase YqeH; Provisio 97.6 8.6E-05 1.9E-09 78.0 6.5 61 91-167 161-222 (365)
410 COG1161 Predicted GTPases [Gen 97.6 8.3E-05 1.8E-09 76.7 6.3 58 90-167 132-189 (322)
411 KOG4423 GTP-binding protein-li 97.6 5.5E-06 1.2E-10 75.7 -2.5 115 89-221 24-149 (229)
412 cd01854 YjeQ_engC YjeQ/EngC. 97.6 9.8E-05 2.1E-09 75.0 6.1 65 91-168 162-226 (287)
413 PRK06731 flhF flagellar biosyn 97.6 0.0006 1.3E-08 68.3 11.4 131 89-221 74-225 (270)
414 KOG1491 Predicted GTP-binding 97.6 0.0002 4.4E-09 71.8 7.6 84 89-190 19-126 (391)
415 cd01854 YjeQ_engC YjeQ/EngC. 97.6 0.00022 4.8E-09 72.4 8.2 46 176-221 76-123 (287)
416 cd02038 FleN-like FleN is a me 97.6 0.0011 2.3E-08 59.8 11.7 75 155-232 45-121 (139)
417 KOG2485 Conserved ATP/GTP bind 97.6 0.00021 4.6E-09 71.1 7.5 88 88-188 141-229 (335)
418 cd03703 aeIF5B_II aeIF5B_II: T 97.5 0.00067 1.4E-08 57.7 9.3 81 391-471 2-93 (110)
419 PRK00098 GTPase RsgA; Reviewed 97.5 0.00028 6.1E-09 72.1 8.5 46 175-220 77-124 (298)
420 PRK12724 flagellar biosynthesi 97.5 0.00084 1.8E-08 70.7 12.0 129 90-220 223-372 (432)
421 TIGR03597 GTPase_YqeH ribosome 97.5 0.00036 7.8E-09 73.2 9.1 54 166-221 51-104 (360)
422 PRK12723 flagellar biosynthesi 97.5 0.0015 3.3E-08 68.7 13.7 130 89-220 173-325 (388)
423 COG1419 FlhF Flagellar GTP-bin 97.5 0.0009 2E-08 69.6 11.1 129 89-221 202-352 (407)
424 PRK05703 flhF flagellar biosyn 97.5 0.00085 1.9E-08 71.8 11.4 129 90-220 221-370 (424)
425 KOG0447 Dynamin-like GTP bindi 97.5 0.0026 5.6E-08 67.3 14.2 137 87-223 305-495 (980)
426 cd01859 MJ1464 MJ1464. This f 97.4 0.00021 4.6E-09 65.5 5.6 23 89-111 100-122 (156)
427 PRK00098 GTPase RsgA; Reviewed 97.4 0.00022 4.8E-09 72.8 6.0 21 91-111 165-185 (298)
428 cd02037 MRP-like MRP (Multiple 97.4 0.00097 2.1E-08 62.1 9.4 83 153-237 66-159 (169)
429 PRK08099 bifunctional DNA-bind 97.4 0.00083 1.8E-08 71.2 10.0 143 88-237 217-396 (399)
430 cd03701 IF2_IF5B_II IF2_IF5B_I 97.3 0.0012 2.5E-08 55.2 8.4 76 391-471 2-78 (95)
431 PRK14723 flhF flagellar biosyn 97.3 0.0014 3E-08 74.1 11.3 129 90-220 185-336 (767)
432 PRK06995 flhF flagellar biosyn 97.3 0.0018 3.9E-08 69.8 11.8 129 89-220 255-404 (484)
433 PRK13849 putative crown gall t 97.3 0.0018 3.9E-08 63.6 10.5 64 153-218 82-151 (231)
434 PF14578 GTP_EFTU_D4: Elongati 97.2 0.0024 5.1E-08 51.2 8.8 75 389-471 4-80 (81)
435 cd00066 G-alpha G protein alph 97.2 0.00068 1.5E-08 69.9 7.2 82 141-222 147-243 (317)
436 PF09547 Spore_IV_A: Stage IV 97.2 0.0014 3E-08 68.1 9.2 153 90-244 17-217 (492)
437 PHA02518 ParA-like protein; Pr 97.2 0.0038 8.2E-08 60.0 11.9 77 153-231 75-157 (211)
438 PRK13796 GTPase YqeH; Provisio 97.1 0.0027 5.9E-08 66.7 10.5 49 171-221 61-110 (365)
439 smart00275 G_alpha G protein a 97.1 0.0015 3.2E-08 68.0 8.1 82 141-222 170-266 (342)
440 cd02117 NifH_like This family 97.1 0.0043 9.3E-08 60.1 10.8 85 153-240 115-206 (212)
441 PRK12288 GTPase RsgA; Reviewed 97.1 0.003 6.4E-08 65.8 10.1 45 177-221 119-164 (347)
442 PRK01889 GTPase RsgA; Reviewed 97.1 0.0029 6.3E-08 66.3 9.9 46 176-221 110-156 (356)
443 TIGR01969 minD_arch cell divis 97.1 0.011 2.4E-07 58.5 13.7 81 153-237 107-188 (251)
444 KOG3887 Predicted small GTPase 97.0 0.0043 9.4E-08 59.5 9.7 116 91-223 28-151 (347)
445 KOG1424 Predicted GTP-binding 97.0 0.00078 1.7E-08 71.2 5.2 73 90-182 314-386 (562)
446 cd03111 CpaE_like This protein 97.0 0.0074 1.6E-07 51.5 10.5 59 156-216 44-106 (106)
447 KOG3859 Septins (P-loop GTPase 97.0 0.0036 7.8E-08 61.2 9.1 144 89-247 41-218 (406)
448 cd02042 ParA ParA and ParB of 97.0 0.0051 1.1E-07 52.0 9.1 71 93-190 2-73 (104)
449 PRK13185 chlL protochlorophyll 97.0 0.0089 1.9E-07 60.1 12.3 81 153-239 116-201 (270)
450 TIGR01007 eps_fam capsular exo 97.0 0.0092 2E-07 57.3 11.8 68 153-221 126-194 (204)
451 TIGR03371 cellulose_yhjQ cellu 96.9 0.011 2.3E-07 58.4 12.5 82 155-238 115-199 (246)
452 TIGR03348 VI_IcmF type VI secr 96.9 0.0021 4.5E-08 77.6 8.3 116 90-221 111-257 (1169)
453 cd02032 Bchl_like This family 96.9 0.014 3.1E-07 58.5 13.1 80 154-239 115-199 (267)
454 KOG0780 Signal recognition par 96.9 0.0069 1.5E-07 62.0 10.3 124 90-220 101-253 (483)
455 CHL00072 chlL photochlorophyll 96.9 0.012 2.7E-07 59.8 12.4 85 154-245 115-204 (290)
456 cd01983 Fer4_NifH The Fer4_Nif 96.8 0.0097 2.1E-07 48.9 9.3 73 93-195 2-75 (99)
457 TIGR01281 DPOR_bchL light-inde 96.7 0.014 3E-07 58.6 11.4 81 153-239 114-199 (268)
458 KOG4181 Uncharacterized conser 96.7 0.043 9.2E-07 55.5 14.1 24 88-111 186-209 (491)
459 PRK13232 nifH nitrogenase redu 96.7 0.011 2.4E-07 59.6 10.0 85 152-238 114-203 (273)
460 KOG2484 GTPase [General functi 96.6 0.0016 3.5E-08 66.8 3.8 61 86-166 248-308 (435)
461 cd02040 NifH NifH gene encodes 96.6 0.019 4.1E-07 57.6 11.3 84 153-238 115-204 (270)
462 CHL00175 minD septum-site dete 96.6 0.057 1.2E-06 54.6 14.8 84 154-239 126-212 (281)
463 KOG2423 Nucleolar GTPase [Gene 96.5 0.0013 2.7E-08 67.2 2.3 28 84-111 301-328 (572)
464 COG3523 IcmF Type VI protein s 96.5 0.0075 1.6E-07 71.1 8.9 114 91-221 126-270 (1188)
465 KOG3905 Dynein light intermedi 96.5 0.07 1.5E-06 53.6 14.1 23 89-111 51-73 (473)
466 PRK13695 putative NTPase; Prov 96.5 0.0061 1.3E-07 57.0 6.4 39 177-217 95-136 (174)
467 cd04178 Nucleostemin_like Nucl 96.5 0.0044 9.5E-08 57.9 5.2 42 180-221 1-44 (172)
468 COG0552 FtsY Signal recognitio 96.4 0.021 4.6E-07 57.9 10.2 143 88-237 137-312 (340)
469 COG1618 Predicted nucleotide k 96.4 0.077 1.7E-06 48.3 12.5 23 90-112 5-27 (179)
470 PF01656 CbiA: CobQ/CobB/MinD/ 96.2 0.0081 1.8E-07 56.8 5.8 80 154-235 94-177 (195)
471 TIGR01287 nifH nitrogenase iro 96.2 0.032 6.9E-07 56.3 10.4 83 154-238 115-203 (275)
472 PRK13230 nitrogenase reductase 96.2 0.044 9.6E-07 55.4 11.3 87 153-240 115-206 (279)
473 PRK01889 GTPase RsgA; Reviewed 96.2 0.0075 1.6E-07 63.2 5.8 22 91-112 196-217 (356)
474 smart00010 small_GTPase Small 96.1 0.011 2.3E-07 51.3 5.8 20 92-111 2-21 (124)
475 KOG1707 Predicted Ras related/ 96.1 0.039 8.5E-07 59.5 10.6 134 86-238 421-559 (625)
476 PF07015 VirC1: VirC1 protein; 96.1 0.036 7.9E-07 53.7 9.4 121 97-219 9-152 (231)
477 PF06858 NOG1: Nucleolar GTP-b 95.9 0.029 6.2E-07 41.7 6.0 47 172-218 6-58 (58)
478 TIGR00487 IF-2 translation ini 95.9 0.037 8.1E-07 61.7 9.7 79 392-471 495-575 (587)
479 PRK10751 molybdopterin-guanine 95.8 0.054 1.2E-06 50.5 9.0 24 89-112 5-28 (173)
480 PRK05306 infB translation init 95.8 0.053 1.2E-06 62.3 10.7 80 391-471 696-777 (787)
481 cd03116 MobB Molybdenum is an 95.7 0.062 1.4E-06 49.5 9.1 22 91-112 2-23 (159)
482 TIGR03499 FlhF flagellar biosy 95.7 0.012 2.7E-07 59.6 4.8 24 89-112 193-216 (282)
483 cd02035 ArsA ArsA ATPase funct 95.7 0.1 2.2E-06 50.7 11.1 66 155-220 114-183 (217)
484 PRK13231 nitrogenase reductase 95.7 0.3 6.4E-06 48.9 14.7 85 153-239 112-198 (264)
485 cd00550 ArsA_ATPase Oxyanion-t 95.6 0.12 2.7E-06 51.4 11.6 85 153-237 123-230 (254)
486 PF05783 DLIC: Dynein light in 95.6 0.094 2E-06 56.7 11.3 22 90-111 25-46 (472)
487 PRK14493 putative bifunctional 95.6 0.042 9.1E-07 55.3 8.0 23 91-113 2-24 (274)
488 PRK13233 nifH nitrogenase redu 95.6 0.049 1.1E-06 54.9 8.6 80 153-239 117-207 (275)
489 CHL00189 infB translation init 95.6 0.057 1.2E-06 61.5 9.8 79 391-471 651-731 (742)
490 PRK08084 DNA replication initi 95.6 0.35 7.5E-06 47.6 14.3 22 91-112 46-67 (235)
491 PF13555 AAA_29: P-loop contai 95.5 0.014 3.1E-07 44.4 3.1 21 92-112 25-45 (62)
492 PRK13235 nifH nitrogenase redu 95.4 0.17 3.7E-06 51.0 11.9 84 153-238 116-205 (274)
493 COG1162 Predicted GTPases [Gen 95.4 0.091 2E-06 52.9 9.6 44 179-222 80-125 (301)
494 COG0563 Adk Adenylate kinase a 95.4 0.03 6.5E-07 52.6 5.6 106 92-214 2-111 (178)
495 TIGR03018 pepcterm_TyrKin exop 95.2 0.17 3.7E-06 48.6 10.6 57 156-215 150-207 (207)
496 smart00382 AAA ATPases associa 95.2 0.14 3E-06 44.6 9.2 25 91-115 3-27 (148)
497 cd03109 DTBS Dethiobiotin synt 95.1 0.61 1.3E-05 41.5 13.2 80 155-237 39-127 (134)
498 PF13207 AAA_17: AAA domain; P 95.1 0.02 4.3E-07 49.7 3.4 24 92-115 1-24 (121)
499 TIGR03420 DnaA_homol_Hda DnaA 95.1 0.37 8E-06 46.7 12.7 24 89-112 37-60 (226)
500 COG1763 MobB Molybdopterin-gua 95.0 0.14 3.1E-06 47.0 8.9 22 90-111 2-23 (161)
No 1
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-98 Score=774.02 Aligned_cols=485 Identities=55% Similarity=0.876 Sum_probs=459.0
Q ss_pred hccCCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEc
Q 008294 82 KRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIID 161 (571)
Q Consensus 82 ~~~~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liD 161 (571)
....+.+++|||+|+.|.++||||+.++++|++|.+..++++..+.+.||+++.|++||+|++.+...+.|.++++|+||
T Consensus 31 ~~~~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiID 110 (721)
T KOG0465|consen 31 NARIPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIID 110 (721)
T ss_pred cccCchhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEec
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCccee
Q 008294 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (571)
Q Consensus 162 TPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 241 (571)
||||.||.-+++++++..|++|+|+|+..|++.||..+|++++++++|.+.++||||+.++++.+++++|..+|..+++.
T Consensus 111 TPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~ 190 (721)
T KOG0465|consen 111 TPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAV 190 (721)
T ss_pred CCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHH
Q 008294 242 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETI 321 (571)
Q Consensus 242 ~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l 321 (571)
+|+|++.+.+|.|++|++.+++++|++++ |......++|+++.+.+.+.|++|+|.+++.||++.|.||++.+.+.++|
T Consensus 191 vqiPig~e~~f~GvvDlv~~kai~~~g~~-g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l 269 (721)
T KOG0465|consen 191 VQIPIGSESNFKGVVDLVNGKAIYWDGEN-GEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQL 269 (721)
T ss_pred eEccccccccchhHHhhhhceEEEEcCCC-CceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHH
Confidence 99999999999999999999999999874 55666699999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCC-CeEEEEEEEeec
Q 008294 322 KKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDE-PFAGLAFKIMSD 400 (571)
Q Consensus 322 ~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~V~k~~~d 400 (571)
..++++.+..+.|+||+||||++|.||+.|||+++++||+|.|...+......+..+...+....++ ||++++||+..+
T Consensus 270 ~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g 349 (721)
T KOG0465|consen 270 KAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEG 349 (721)
T ss_pred HHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeec
Confidence 9999999999999999999999999999999999999999999888766521112222333333444 999999999999
Q ss_pred CCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCC-CCcccc
Q 008294 401 PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDA-DHPILL 479 (571)
Q Consensus 401 ~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~-~~~~~l 479 (571)
++ |.+.|+|||+|+|++||.|||.++++++|+.+|++||++..++|+++.|||||++.|+ ++.+|||+.+. .....+
T Consensus 350 ~f-GqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGi-dcasGDTftd~~~~~~~m 427 (721)
T KOG0465|consen 350 RF-GQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGI-DCASGDTFTDKQNLALSM 427 (721)
T ss_pred Cc-cceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeecc-ccccCceeccCcccccee
Confidence 99 9999999999999999999999999999999999999999999999999999999999 79999999998 667889
Q ss_pred cCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecC
Q 008294 480 ERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPK 559 (571)
Q Consensus 480 ~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p 559 (571)
.++.+|+||++++|+|.+..|.++|++||.++.+|||||+++.|.|++|++|+|||||||||..+||+++||+++.++.|
T Consensus 428 ~si~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy~~~~~~Gkp 507 (721)
T KOG0465|consen 428 ESIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREYKVDAELGKP 507 (721)
T ss_pred eeeecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHhCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEec
Q 008294 560 STIVKAFLKS 569 (571)
Q Consensus 560 ~i~yke~~~~ 569 (571)
+|.|||+|.+
T Consensus 508 ~VayRETi~~ 517 (721)
T KOG0465|consen 508 QVAYRETITS 517 (721)
T ss_pred eeeehhhcCC
Confidence 9999999975
No 2
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-96 Score=803.62 Aligned_cols=480 Identities=65% Similarity=1.053 Sum_probs=459.2
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTPG~ 165 (571)
.+++|||+|+||.+||||||+++|++.+|.+.+.|+++.|++++|++++|++||+|+.++..++.|++ ++|||||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 67899999999999999999999999999999999999999999999999999999999999999996 99999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
.||..++.++++.+|++|+||||.+|+++||+.+|+++.++++|.++|+||||+..+++..++++++++|+..+.++++|
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~p 166 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLP 166 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
|+.++.|.|++|++.++++.|+. |..+...++|++..+...++|..++|.+++.|+++|++|++|.+++.+++...+
T Consensus 167 Ig~~~~f~g~idl~~~~~~~~~~---~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i 243 (697)
T COG0480 167 IGAEEEFEGVIDLVEMKAVAFGD---GAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKAL 243 (697)
T ss_pred ccCccccCceeEhhhcCeEEEcC---CcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHH
Confidence 99999999999999999999984 444444678899999999999999999999999999999999999999999999
Q ss_pred HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCce
Q 008294 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~ 405 (571)
++.+..+.++|++|+||++|.|++.|||++++++|+|.+.+.+.+...+........+++.++|++++|||+..|+++|+
T Consensus 244 ~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~ 323 (697)
T COG0480 244 RKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK 323 (697)
T ss_pred HHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCe
Confidence 99999999999999999999999999999999999999998877764433333333466789999999999999999999
Q ss_pred EEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCCCC
Q 008294 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFP 485 (571)
Q Consensus 406 i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~ 485 (571)
++|+|||||+|++||.|+|...++++||.+|+.|+|+++++++++.||||+++.||+++.+|||+|+...++.+.++.+|
T Consensus 324 l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~~~~~~v~~~~~~~p 403 (697)
T COG0480 324 LTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDENKPVILESMEFP 403 (697)
T ss_pred EEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEcccccccCCeeecCCCccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988867889999999
Q ss_pred CceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEEE
Q 008294 486 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVKA 565 (571)
Q Consensus 486 ~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yke 565 (571)
+|+++++|+|+++.|++||.++|++|++|||++++++|+||||++|+||||||||++++||+++||||+++++|+|.|||
T Consensus 404 ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~~Vev~~~~PqV~YrE 483 (697)
T COG0480 404 EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFGVEVEVGKPQVAYRE 483 (697)
T ss_pred CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhcCceEEecCCeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEec
Q 008294 566 FLKS 569 (571)
Q Consensus 566 ~~~~ 569 (571)
||+.
T Consensus 484 Ti~~ 487 (697)
T COG0480 484 TIRK 487 (697)
T ss_pred eecc
Confidence 9985
No 3
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=3.8e-88 Score=758.43 Aligned_cols=486 Identities=70% Similarity=1.105 Sum_probs=457.0
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
...+++|||+|+||+|+|||||+++|++.+|.+...|.+..|++++|+.+.|+++|+|++....++.|++++++||||||
T Consensus 5 ~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG 84 (693)
T PRK00007 5 TPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPG 84 (693)
T ss_pred CcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCC
Confidence 35677999999999999999999999999999888888889999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
|.+|..++.++++.+|++|+|||+.+|++.|++.+|..+...++|+++|+||+|+..+++.++++++++.++....+.++
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~i 164 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQL 164 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
|++...+|.|++|++.+.++.|.....|..+...++|..+.+....+|..|+|.+++.||++|++||+|++++.+++...
T Consensus 165 pisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~ 244 (693)
T PRK00007 165 PIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAA 244 (693)
T ss_pred cCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHH
Confidence 99999999999999999999997544677788888999888889999999999999999999999999999999999999
Q ss_pred HHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCc
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVG 404 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G 404 (571)
+++++..+.++||+|+||+++.|++.|||+|++++|+|.+++...+...+.......+.|++++|++++|||+.+|++.|
T Consensus 245 l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G 324 (693)
T PRK00007 245 LRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFVG 324 (693)
T ss_pred HHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCCC
Confidence 99999999999999999999999999999999999999886654432111122345577899999999999999999999
Q ss_pred eEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCCC
Q 008294 405 SLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDF 484 (571)
Q Consensus 405 ~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~ 484 (571)
+++|+|||||+|++||.|++...++.++|++|+.+.|+++.+|++|.|||||+|.|++++.+||||++...+..++++.+
T Consensus 325 ~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~~~~~~~~l~~~~~ 404 (693)
T PRK00007 325 KLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLCDEKNPIILESMEF 404 (693)
T ss_pred cEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEeeCCCCccccCCCCC
Confidence 99999999999999999999888888999999999999999999999999999999999999999998877777888889
Q ss_pred CCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEE
Q 008294 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVK 564 (571)
Q Consensus 485 ~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yk 564 (571)
|.|+++++|+|.++.|.+||.++|++|++|||+|+|.+|+||||++|+||||+|||++++||+++|++++++++|.|.||
T Consensus 405 ~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~~vev~~s~p~V~yr 484 (693)
T PRK00007 405 PEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEANVGKPQVAYR 484 (693)
T ss_pred CCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHhCCeeEecCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecC
Q 008294 565 AFLKSL 570 (571)
Q Consensus 565 e~~~~~ 570 (571)
|+|.+.
T Consensus 485 ETi~~~ 490 (693)
T PRK00007 485 ETIRKK 490 (693)
T ss_pred ecccCc
Confidence 999753
No 4
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=2.2e-87 Score=752.89 Aligned_cols=484 Identities=69% Similarity=1.108 Sum_probs=457.1
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+.+++|||+|+||+|+|||||+++|++.+|.+.+.|.+..|++++|+.++|++||+|++....++.|++++++|||||||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~ 83 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGH 83 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCH
Confidence 45679999999999999999999999999988888888889999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
.+|..++.++++.+|++|+|||+.+|++.+++.+|..+...++|.++++||+|+..+++.++++++++.++....+.++|
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~iP 163 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLP 163 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEec
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
++...+|.|++|++.++.+.|.....|..+...++|..+.+...++|+.|+|.+++.||++||+||+|.+++.+++...+
T Consensus 164 is~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l 243 (691)
T PRK12739 164 IGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAI 243 (691)
T ss_pred ccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHH
Confidence 99999999999999999999976555677888899999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCce
Q 008294 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~ 405 (571)
++....+.++||+++||++|.|++.|||+|++++|+|.+++..+.....+. ....+.|++++|++++|||+++|++.|+
T Consensus 244 ~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~-~~~~~~~~~~~pl~a~VfK~~~d~~~G~ 322 (691)
T PRK12739 244 RKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTE-EEIERPASDDEPFAALAFKIMTDPFVGR 322 (691)
T ss_pred HHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCC-cceeeccCCCCCeEEEEEEeeeCCCCCe
Confidence 999999999999999999999999999999999999988766554322111 3456788999999999999999999999
Q ss_pred EEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCCCC
Q 008294 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFP 485 (571)
Q Consensus 406 i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~ 485 (571)
++|+|||||+|++||.|++...++.+++++|+.++|+++.+++++.|||||+|.|++++.+||||++...+..++++.+|
T Consensus 323 i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~l~~~~~~ 402 (691)
T PRK12739 323 LTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEKAPIILESMEFP 402 (691)
T ss_pred EEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEeCCCCccccCCCCCC
Confidence 99999999999999999999888899999999999999999999999999999999999999999988777788889999
Q ss_pred CceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEEE
Q 008294 486 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVKA 565 (571)
Q Consensus 486 ~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yke 565 (571)
.|+++++|+|.++.|++||.+||++|++|||+|++++|+||||++|+||||||||++++||+++|++++++++|.|.|||
T Consensus 403 ~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~vev~~s~p~V~yrE 482 (691)
T PRK12739 403 EPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANVGAPQVAYRE 482 (691)
T ss_pred CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHhCCeeEecCCEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC
Q 008294 566 FLKSL 570 (571)
Q Consensus 566 ~~~~~ 570 (571)
+|++.
T Consensus 483 ti~~~ 487 (691)
T PRK12739 483 TITKS 487 (691)
T ss_pred ccCCc
Confidence 99863
No 5
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=1e-86 Score=748.10 Aligned_cols=484 Identities=63% Similarity=1.013 Sum_probs=456.5
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
...+++|||+|+||+|+|||||+|+|++.+|.+.+.+++.+|++++|+.+.|+++|+|++.....+.|++++++||||||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG 84 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPG 84 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCC
Confidence 45678999999999999999999999999999888888889999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
|.+|..++..+++.+|++++|||+.+|+..+++.+|+.+...++|+++|+||+|+..+++.+++++|++.++....+.++
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~i 164 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQL 164 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
|++...+|.|++|++.++.++|.. ..++.+...++++++.+.+..+|+.|+|.+++.||++||+|++|++++.+++...
T Consensus 165 pis~~~~~~~~id~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~ 243 (689)
T TIGR00484 165 PIGAEDNFIGVIDLVEMKAYFFNG-DKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNA 243 (689)
T ss_pred ccccCCCceEEEECccceEEeccc-CCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHH
Confidence 999999999999999999998875 3688888999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCc
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVG 404 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G 404 (571)
+++++..+.++||+++||++|.|++.|||+|++++|+|.+++...+... +......+.|++++|++|+|||+.+|++.|
T Consensus 244 l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~-~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G 322 (689)
T TIGR00484 244 IRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDP-DTEKEIERKASDDEPFSALAFKVATDPFVG 322 (689)
T ss_pred HHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCC-CCCceeeecCCCCCceEEEEEEeeecCCCC
Confidence 9999999999999999999999999999999999999987655443222 112345577899999999999999999999
Q ss_pred eEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCCC
Q 008294 405 SLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDF 484 (571)
Q Consensus 405 ~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~ 484 (571)
+++|+|||||+|+.||.|++...++.+++++|+.+.|+++.+++++.|||||+|.|++++.+||||++...+..++++.+
T Consensus 323 ~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~~ 402 (689)
T TIGR00484 323 QLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCDPKIDVILERMEF 402 (689)
T ss_pred eEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEeCCCCccccCCCCC
Confidence 99999999999999999999988888999999999999999999999999999999999999999998887778888889
Q ss_pred CCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEE
Q 008294 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVK 564 (571)
Q Consensus 485 ~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yk 564 (571)
|+|+++++|+|.++.|++||.++|++|++|||+|+|.+|+||||++|+||||+|||++++||+++||+++++++|.|.||
T Consensus 403 ~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~~vev~~~~p~V~yr 482 (689)
T TIGR00484 403 PEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANVGAPQVAYR 482 (689)
T ss_pred CCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHhCCeeEecCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecC
Q 008294 565 AFLKSL 570 (571)
Q Consensus 565 e~~~~~ 570 (571)
|+|++.
T Consensus 483 Eti~~~ 488 (689)
T TIGR00484 483 ETIRSK 488 (689)
T ss_pred ecccCc
Confidence 999754
No 6
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=5.3e-84 Score=727.90 Aligned_cols=483 Identities=52% Similarity=0.897 Sum_probs=453.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+.+++|||+|+||.|+|||||+++|++.+|.+...+.+..|++.+|+.+.|+++|+|+......+.|+++.++|||||||
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 45678999999999999999999999999988888888889999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
.+|..++..+++.+|++++|+|+.++...++..+|+.+...++|+++|+||+|+.++++.++++++++.++..+.++++|
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~P 163 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLP 163 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
++.+..|.|++|++.++++.|.....+..+...++|..+.+....++..++|.+++.||+++|+|+++.+++.+++...+
T Consensus 164 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~ 243 (687)
T PRK13351 164 IGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPL 243 (687)
T ss_pred cccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHH
Confidence 99999999999999999999976544666777888998999999999999999999999999999999999999999999
Q ss_pred HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCce
Q 008294 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~ 405 (571)
++++..+.++||||+||++|.|++.|||+|++++|+|.+++..+... +......+.|++++|++++|||+..++++|+
T Consensus 244 ~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~--~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~ 321 (687)
T PRK13351 244 REGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK--DNGKPVKVDPDPEKPLLALVFKVQYDPYAGK 321 (687)
T ss_pred HHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccC--CCCCceeecCCCCCCeEEEEEEeeecCCCce
Confidence 99999999999999999999999999999999999998765544321 1112234678899999999999999999999
Q ss_pred EEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCCCC
Q 008294 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFP 485 (571)
Q Consensus 406 i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~ 485 (571)
++|+|||||+|++||.|++.+.++.+++++|+.++|+++.++++|.||||+++.|++++.+||||++...+..++++.+|
T Consensus 322 i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~~~ 401 (687)
T PRK13351 322 LTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLHDSADPVLLELLTFP 401 (687)
T ss_pred EEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEeCCCCccccCCCCCC
Confidence 99999999999999999999988899999999999999999999999999999999999999999988777777788899
Q ss_pred CceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEEE
Q 008294 486 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVKA 565 (571)
Q Consensus 486 ~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yke 565 (571)
.|+++++|+|.++.|.+||.+||++|++|||+|++++|+||||++|+||||||||++++||+++|++++++++|.|.|||
T Consensus 402 ~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~~vev~~~~p~V~y~E 481 (687)
T PRK13351 402 EPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNTGKPQVAYRE 481 (687)
T ss_pred CccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCCceEecCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC
Q 008294 566 FLKSL 570 (571)
Q Consensus 566 ~~~~~ 570 (571)
+|++.
T Consensus 482 ti~~~ 486 (687)
T PRK13351 482 TIRKM 486 (687)
T ss_pred ecccc
Confidence 99863
No 7
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=1.9e-81 Score=678.01 Aligned_cols=449 Identities=31% Similarity=0.507 Sum_probs=410.1
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeec---Cc-ccccchhhhhhhceeEeeceEEEeecCeEEEEEcC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHE---GT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~---g~-~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDT 162 (571)
..++|||+|+||+|+|||||+++|++.+|.+...|.+.. ++ +++|+++.|++||+|+......+.|+++.+++|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 356899999999999999999999999999988888763 22 55899999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceee
Q 008294 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (571)
Q Consensus 163 PG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 242 (571)
|||.+|..++.++++.+|++|+|+|+.+|+..+++.+|+.+...++|+++|+||+|+..+++.++++++++.|+.+++|+
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~ 166 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPI 166 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHH
Q 008294 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (571)
Q Consensus 243 ~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~ 322 (571)
++||+.+.+|+|++|++.++++.|... .|.. ..+.|.+++.||++|++|++++.+ +++.
T Consensus 167 ~~Pig~~~~f~Gvvdl~~~~~~~~~~~-~~~~------------------~~~~e~~~~~dd~lle~~l~~~~~--~~l~ 225 (526)
T PRK00741 167 TWPIGMGKRFKGVYDLYNDEVELYQPG-EGHT------------------IQEVEIIKGLDNPELDELLGEDLA--EQLR 225 (526)
T ss_pred EeccccCCceeEEEEeecceeeecccC-CCCc------------------ceeeeeccCCCHHHHHHHhcccHH--HHHH
Confidence 999999999999999999999999532 1211 134567889999999999998755 6666
Q ss_pred HHH-----------HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeE
Q 008294 323 KLI-----------RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFA 391 (571)
Q Consensus 323 ~~l-----------~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 391 (571)
+.+ ++++..+.++|||||||++|.||+.|||.|++++|+|.++... ...+.+ .+.+++
T Consensus 226 ~~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~----------~~~~~~-~~~~~~ 294 (526)
T PRK00741 226 EELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTD----------EREVEP-TEEKFS 294 (526)
T ss_pred HHHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCccccc----------ceeecC-CCCceE
Confidence 666 8889999999999999999999999999999999999864321 011222 345799
Q ss_pred EEEEEEe---ecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccc
Q 008294 392 GLAFKIM---SDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGE 468 (571)
Q Consensus 392 ~~V~k~~---~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gd 468 (571)
++|||+. .++++|+++|+|||||+|+.|+.|+|.++++.+|+++++.++|.++++|++|.||||+++.|++++++||
T Consensus 295 ~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GD 374 (526)
T PRK00741 295 GFVFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGD 374 (526)
T ss_pred EEEEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCCccCC
Confidence 9999998 4679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHh
Q 008294 469 TLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKR 548 (571)
Q Consensus 469 tl~~~~~~~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~ 548 (571)
|||+.+ +..++++++|.|+++++|+|+++.|++||.+||++|++||| +++.+|++|||++|+||||+||||+++||++
T Consensus 375 TL~~~~-~~~~~~i~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~RL~~ 452 (526)
T PRK00741 375 TFTQGE-KLKFTGIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAHRLKN 452 (526)
T ss_pred CccCCC-ccccCCCCCCCccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHHHHHH
Confidence 999866 77788999999999999999999999999999999999995 9999999999999999999999999999999
Q ss_pred HhCceEEEecCeEEEEEEEec
Q 008294 549 EFKKLMLVHPKSTIVKAFLKS 569 (571)
Q Consensus 549 ~~~vev~~~~p~i~yke~~~~ 569 (571)
+||+++.+++|.|.+-.||..
T Consensus 453 ey~v~v~~~~~~v~~~rw~~~ 473 (526)
T PRK00741 453 EYNVEAIYEPVGVATARWVEC 473 (526)
T ss_pred HhCCEEEEecCCccEEEEEeC
Confidence 999999999999999999964
No 8
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=3.1e-78 Score=680.20 Aligned_cols=468 Identities=57% Similarity=0.916 Sum_probs=439.0
Q ss_pred EcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHH
Q 008294 96 MAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERA 175 (571)
Q Consensus 96 vG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~ 175 (571)
+||+|+|||||+++|++.+|.+...|.++.|.+++|+.+.|+++|+|+......+.|+++.++|||||||.+|..++..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 69999999999999999999988888888888999999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCCCCCCccee
Q 008294 176 LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGV 255 (571)
Q Consensus 176 l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~ 255 (571)
++.+|++++|+|+..+...++..+|..+...++|+++|+||+|+..++..++++++++.++....+.++|+..+..|.++
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~ 160 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGV 160 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceEE
Confidence 99999999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred eecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcce
Q 008294 256 VDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFV 335 (571)
Q Consensus 256 id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~ 335 (571)
+|++.++.++|+ .+..+...+.|+...+....++..++|.+++.||+++++|+++.+++.+++...+++.+..+.++
T Consensus 161 id~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~ 237 (668)
T PRK12740 161 VDLLSMKAYRYD---EGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIV 237 (668)
T ss_pred EECccceEEEec---CCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 999999999998 25667777888888888888999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecce
Q 008294 336 PVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGT 415 (571)
Q Consensus 336 Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~ 415 (571)
|||++||++|.|++.|||+|.+++|+|.+++...+.. ........|++++|++++|||+++++++|+++++|||+|+
T Consensus 238 Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~---~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~ 314 (668)
T PRK12740 238 PVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGED---GEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGT 314 (668)
T ss_pred EEEeccccCCccHHHHHHHHHHHCCChhhcccccCCC---CccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeE
Confidence 9999999999999999999999999998755432211 1122345688999999999999999999999999999999
Q ss_pred eCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCCCCCceEEEEEEe
Q 008294 416 LSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEP 495 (571)
Q Consensus 416 l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~Pv~~~avep 495 (571)
|++||.|++.+.++.+++++|+.++|++..++++|.||||+++.|++++.+||||++...+..++++.+++|+++++|+|
T Consensus 315 L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~~~~~~~~P~~~~~i~p 394 (668)
T PRK12740 315 LKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEPVISLAIEP 394 (668)
T ss_pred EcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCccccCCCCCCCcceEEEEEE
Confidence 99999999998888899999999999999999999999999999999999999999877777888889999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEEEEEec
Q 008294 496 KTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVKAFLKS 569 (571)
Q Consensus 496 ~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yke~~~~ 569 (571)
.+++|.++|.++|++|+++||+|++++|+++||++|+|+||+|||++++||+++|++++.+++|.|.|||+|.+
T Consensus 395 ~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~~~v~~~~p~V~yrEti~~ 468 (668)
T PRK12740 395 KDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRK 468 (668)
T ss_pred CCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCceeEecCCeeEEeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
No 9
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=2.4e-77 Score=646.35 Aligned_cols=452 Identities=29% Similarity=0.455 Sum_probs=399.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee-cC---cccccchhhhhhhceeEeeceEEEeecCeEEEEEc
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EG---TATMDWMEQEQERGITITSAATTTYWNKHRINIID 161 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~-~g---~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liD 161 (571)
...++|||+|+||+|+|||||+++|++.+|.+...|.+. .| .+++|+++.|++||+|+......+.|++++++|||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 345789999999999999999999999999998888876 33 37899999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCccee
Q 008294 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (571)
Q Consensus 162 TPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 241 (571)
||||.+|..++.++++.+|++|+|||+..|+..+++.+|+.++..++|+++|+||+|+..++..++++++++.++..+.+
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~ 166 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAP 166 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred eeccCCCCCCcceeeecccceeEEecCCCCCceeeee-----cccHH----HHHHHHHHHHHHHHHHhhcCHHHHHHHhc
Q 008294 242 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYE-----DIPAN----LQKMAQEYRSQMIETIVELDDEAMESYLE 312 (571)
Q Consensus 242 ~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~-----~~~~~----~~~~~~~~~~~l~e~~~~~~~~l~e~~l~ 312 (571)
+++||+.+..|.|++|++.++.+.|.....|+..... ..|.. ..+..+.+|+.+ |.+.+.++
T Consensus 167 ~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l-e~~~~~~~-------- 237 (527)
T TIGR00503 167 ITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDEL-ELVEGASN-------- 237 (527)
T ss_pred EEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHH-HHHhhhcc--------
Confidence 9999999999999999999999999654333322211 11211 122344555555 66665554
Q ss_pred CCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEE
Q 008294 313 GNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAG 392 (571)
Q Consensus 313 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 392 (571)
+++ ++++..+.++|||||||++|.||+.|||.|++++|+|.++... ...+.+ .+.+|++
T Consensus 238 --~~~--------~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~----------~~~~~~-~~~~~~~ 296 (527)
T TIGR00503 238 --EFD--------LAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSD----------TRTVEP-TEEKFSG 296 (527)
T ss_pred --ccC--------HHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCC----------ceecCC-CCCCeeE
Confidence 222 3556778999999999999999999999999999999864321 012233 4677999
Q ss_pred EEEEEee--c-CCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccce
Q 008294 393 LAFKIMS--D-PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 469 (571)
Q Consensus 393 ~V~k~~~--d-~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdt 469 (571)
+|||+.. | +++|+++|+|||||+|+.|+.|++.++++++|+++++.++|.++++|++|.||||+++.|++++++|||
T Consensus 297 ~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDt 376 (527)
T TIGR00503 297 FVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDT 376 (527)
T ss_pred EEEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCE
Confidence 9999998 7 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhH
Q 008294 470 LCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKRE 549 (571)
Q Consensus 470 l~~~~~~~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~ 549 (571)
||+ ..+..+.++++|.|+++++|+|+++.|++||.+||++|++||| +++.+|++|+|++|+|||||||||+++||+++
T Consensus 377 l~~-~~~~~~~~i~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~e 454 (527)
T TIGR00503 377 FTQ-GEKIKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEE 454 (527)
T ss_pred ecC-CCceeecCCCCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHHH
Confidence 998 4467788899999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred hCceEEEecCeEEEEEEEec
Q 008294 550 FKKLMLVHPKSTIVKAFLKS 569 (571)
Q Consensus 550 ~~vev~~~~p~i~yke~~~~ 569 (571)
|||++.+++|.|..--||..
T Consensus 455 y~v~v~~~~~~v~~~rw~~~ 474 (527)
T TIGR00503 455 YNVEARYEPVNVATARWVEC 474 (527)
T ss_pred hCCeEEEeCCCceEEEEEcC
Confidence 99999999999999988863
No 10
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=7.8e-76 Score=669.31 Aligned_cols=473 Identities=29% Similarity=0.406 Sum_probs=391.7
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-----------
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------- 153 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~----------- 153 (571)
...+++|||+|+||+|+|||||+++|++.+|.+... ...+++++|+.++|++||+|+..+..++.|.
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~ 91 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKG 91 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccc--cCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccc
Confidence 356789999999999999999999999999976653 3344566999999999999999999888884
Q ss_pred -----CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc-------c
Q 008294 154 -----KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL-------G 221 (571)
Q Consensus 154 -----~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~-------~ 221 (571)
++.++|||||||.||..++.++++.+|++|+|||+.+|+..||+.+|+++...++|+++|+||+|+. .
T Consensus 92 ~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~ 171 (843)
T PLN00116 92 ERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (843)
T ss_pred ccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCH
Confidence 6889999999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred ----cchhhhHHHHH---HHhCCcce-eeec-cCCCC----CCccee------------------eecccceeE---Eec
Q 008294 222 ----ANFFRTRDMIV---TNLGAKPL-VVQL-PVGAE----DNFKGV------------------VDLVKMKAI---IWS 267 (571)
Q Consensus 222 ----~~~~~~~~~i~---~~l~~~~~-~~~~-pi~~~----~~~~~~------------------id~~~~~~~---~~~ 267 (571)
+++.+++++++ ..++.... ++++ |+..+ ..+.++ +|.+..+.| +|+
T Consensus 172 ~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~ 251 (843)
T PLN00116 172 EEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 251 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEc
Confidence 66888999998 22321111 2233 55442 222333 344433333 443
Q ss_pred CCCCCceeeeec--ccHHH---HHHHHHHHHHHHHHHhhcCHHHHHHHhcC--CCCCHHHHHHHHHhhcccCcceeeeec
Q 008294 268 GEELGAKFAYED--IPANL---QKMAQEYRSQMIETIVELDDEAMESYLEG--NEPDEETIKKLIRKGTIAGSFVPVLCG 340 (571)
Q Consensus 268 ~~~~g~~~~~~~--~~~~~---~~~~~~~~~~l~e~~~~~~~~l~e~~l~~--~~~~~~~l~~~l~~~~~~~~~~Pv~~~ 340 (571)
.. +..+...+ .+... .+.+.+.+..++|.+++.|+++|++|+++ ..++.+++.. +++.+....+.|+|++
T Consensus 252 ~~--~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~-~~~~l~~~~~~pv~~~ 328 (843)
T PLN00116 252 PA--TKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKEL-MGKALMKRVMQTWLPA 328 (843)
T ss_pred CC--CceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhh-hhHHHHHHHHHhhcCC
Confidence 31 33344443 33222 22334578999999999999999999997 5899999988 9999999999999986
Q ss_pred cccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCccccccccCCCCCCeEEEEEEEeecCCCce-EEEEEEecc
Q 008294 341 SAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRVYAG 414 (571)
Q Consensus 341 Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~-i~~~rV~sG 414 (571)
| +.|||+|++++|+|.+++..+.. ...+......+.|++++|++++|||+..+++.|+ ++|+|||||
T Consensus 329 s-------~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysG 401 (843)
T PLN00116 329 S-------DALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSG 401 (843)
T ss_pred h-------HHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEee
Confidence 6 88999999999999875433211 0012223456789999999999999999998888 999999999
Q ss_pred eeCCCCEEE----eCCCCce-----eecceEEEeccCceeecCeecCCCEEEEeCCCCccc-cceecCCC--CcccccCC
Q 008294 415 TLSAGSYVL----NANKGKK-----ERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT-GETLCDAD--HPILLERM 482 (571)
Q Consensus 415 ~l~~gd~v~----~~~~~~~-----~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~-Gdtl~~~~--~~~~l~~~ 482 (571)
+|+.||.|+ |...++. +++++|+.++|+++++|++|.|||||+|.|+++..+ |||||+.. .+..+.++
T Consensus 402 tL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~ 481 (843)
T PLN00116 402 TVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAM 481 (843)
T ss_pred eecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCcccccc
Confidence 999999998 4444433 589999999999999999999999999999998654 99999876 56778888
Q ss_pred CCC-CceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHh--CceEEEecC
Q 008294 483 DFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF--KKLMLVHPK 559 (571)
Q Consensus 483 ~~~-~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~--~vev~~~~p 559 (571)
.+| +|+++++|||.+++|++||.+||++|++|||+|++.. +||||++|+||||+|||++++||+++| ||++++++|
T Consensus 482 ~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~-~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p 560 (843)
T PLN00116 482 KFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTI-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDP 560 (843)
T ss_pred ccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEE-cCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCC
Confidence 898 9999999999999999999999999999999999965 899999999999999999999999999 999999999
Q ss_pred eEEEEEEEecC
Q 008294 560 STIVKAFLKSL 570 (571)
Q Consensus 560 ~i~yke~~~~~ 570 (571)
.|.|||||.+.
T Consensus 561 ~V~yrETI~~~ 571 (843)
T PLN00116 561 VVSFRETVLEK 571 (843)
T ss_pred eEEEEeccccc
Confidence 99999999753
No 11
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=3.4e-75 Score=662.69 Aligned_cols=467 Identities=28% Similarity=0.446 Sum_probs=396.9
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCc-ccccchhhhhhhceeEeeceEEEeec----------C
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWN----------K 154 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~-~~~d~~~~e~~~g~t~~~~~~~~~~~----------~ 154 (571)
..+++|||+|+||+|+|||||+++|++.+|.+... ..|+ +++|+.++|++||+|+..+...+.|. +
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~ 91 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK---NAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQP 91 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc---cCCceeecccchhhHhhcceeeccceEEEeecccccccCCCc
Confidence 35779999999999999999999999998876553 3344 45899999999999999998888886 6
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc----c-------cc
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL----G-------AN 223 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~----~-------~~ 223 (571)
+.++|+|||||.+|..++..+++.+|++|+|||+.+|+..|++.+|+.+...++|+++|+||+|+. + ++
T Consensus 92 ~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~ 171 (836)
T PTZ00416 92 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQN 171 (836)
T ss_pred eEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999998 3 77
Q ss_pred hhhhHHHHHHHhC-----------CcceeeeccCCCCC--------Ccce--------eeecccceeE---EecCCCCCc
Q 008294 224 FFRTRDMIVTNLG-----------AKPLVVQLPVGAED--------NFKG--------VVDLVKMKAI---IWSGEELGA 273 (571)
Q Consensus 224 ~~~~~~~i~~~l~-----------~~~~~~~~pi~~~~--------~~~~--------~id~~~~~~~---~~~~~~~g~ 273 (571)
+.+++++++..++ ..+.+.++|++... .|.+ .++.+.+..| +|+. .+.
T Consensus 172 ~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~--~~~ 249 (836)
T PTZ00416 172 FVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDA--KTK 249 (836)
T ss_pred HHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccC--CCC
Confidence 8999999998775 26778899997765 2333 3344444333 4432 234
Q ss_pred eeeeec-------ccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhc--CCCCCHHHH--HH-HHHhhcccCcceeeeecc
Q 008294 274 KFAYED-------IPANLQKMAQEYRSQMIETIVELDDEAMESYLE--GNEPDEETI--KK-LIRKGTIAGSFVPVLCGS 341 (571)
Q Consensus 274 ~~~~~~-------~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~--~~~~~~~~l--~~-~l~~~~~~~~~~Pv~~~S 341 (571)
.+...+ .|..+.+.+.+.+..|+|.+++.||++|++|++ |.+++.+++ .. .+.+.+. +.++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~-~~~~Pv---- 324 (836)
T PTZ00416 250 KWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVM-QKWLPA---- 324 (836)
T ss_pred EEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHH-HHHhch----
Confidence 444333 344566788889999999999999999999999 778898884 22 4555555 789997
Q ss_pred ccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCccccccccCCCCCCeEEEEEEEeecCCCce-EEEEEEecce
Q 008294 342 AFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRVYAGT 415 (571)
Q Consensus 342 a~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~-i~~~rV~sG~ 415 (571)
++.|||+|++++|+|.+++..+.. ..++......+.|++++|++++|||+..+++.|+ ++|+|||||+
T Consensus 325 ------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGt 398 (836)
T PTZ00416 325 ------ADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGT 398 (836)
T ss_pred ------HHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeee
Confidence 799999999999999876543211 0112223456789999999999999999999999 8999999999
Q ss_pred eCCCCEEE----eCCCCcee-----ecceEEEeccCceeecCeecCCCEEEEeCCCC--ccccceecCCCCcccccCCCC
Q 008294 416 LSAGSYVL----NANKGKKE-----RIGRLLEMHANSREDVKVALAGDIIALAGLKD--TITGETLCDADHPILLERMDF 484 (571)
Q Consensus 416 l~~gd~v~----~~~~~~~~-----~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~--~~~Gdtl~~~~~~~~l~~~~~ 484 (571)
|+.||.|+ +...+..+ +|++|+.++|++..+|++|.|||||+|.|+++ ..+| |||+...+..+.++.+
T Consensus 399 L~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~~~~~~~~l~~i~~ 477 (836)
T PTZ00416 399 VATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKY 477 (836)
T ss_pred ecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eecCCCCccccccccc
Confidence 99999998 44444444 49999999999999999999999999999998 7889 9998877777888888
Q ss_pred C-CceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHh-CceEEEecCeEE
Q 008294 485 P-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KKLMLVHPKSTI 562 (571)
Q Consensus 485 ~-~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~-~vev~~~~p~i~ 562 (571)
+ +|+++++|+|.+++|++||.++|++|++|||++.+.. +||||++|+||||+|||++++||+++| +|++++++|.|.
T Consensus 478 ~~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~-~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~ 556 (836)
T PTZ00416 478 SVSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTT-EESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVS 556 (836)
T ss_pred CCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEE-cCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEE
Confidence 6 9999999999999999999999999999999999966 899999999999999999999999999 899999999999
Q ss_pred EEEEEecC
Q 008294 563 VKAFLKSL 570 (571)
Q Consensus 563 yke~~~~~ 570 (571)
|||||.+.
T Consensus 557 yrETI~~~ 564 (836)
T PTZ00416 557 YRETVTEE 564 (836)
T ss_pred EEEEeccc
Confidence 99999764
No 12
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-77 Score=589.15 Aligned_cols=471 Identities=41% Similarity=0.675 Sum_probs=436.2
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+..++|||+|+.|.++||||..++++|..|++...|.+++|.++.|+...|++||+|+++..++++|+++++|+||||||
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh 112 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH 112 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc
Confidence 33468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
.||.-++++.++..|+++.|+|++.|++.||..+|+++.++++|.++++||||+..++++..++++++++|..++.+++|
T Consensus 113 vdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lp 192 (753)
T KOG0464|consen 113 VDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLP 192 (753)
T ss_pred ceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCc-ceeeecccceeEEec-CCCCCceeeeecc----cHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcC-----C
Q 008294 246 VGAEDNF-KGVVDLVKMKAIIWS-GEELGAKFAYEDI----PANLQKMAQEYRSQMIETIVELDDEAMESYLEG-----N 314 (571)
Q Consensus 246 i~~~~~~-~~~id~~~~~~~~~~-~~~~g~~~~~~~~----~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~-----~ 314 (571)
|++...| +|++|++..+.+.|. .+++|..|...++ ..++.+...+.+..|.|.+++.|+++..+++++ .
T Consensus 193 i~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d 272 (753)
T KOG0464|consen 193 IGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFD 272 (753)
T ss_pred ccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhcccc
Confidence 9999999 899999998888883 4567888877663 446667777889999999999999999988874 5
Q ss_pred CCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEE
Q 008294 315 EPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLA 394 (571)
Q Consensus 315 ~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 394 (571)
.++.+++...+++........|++||||.++.|++.|||++.-++|+|.+++....- =....+.++.
T Consensus 273 ~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyeflq-------------wykddlcala 339 (753)
T KOG0464|consen 273 KIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEFLQ-------------WYKDDLCALA 339 (753)
T ss_pred ccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchHHHh-------------hhhhhHHHHh
Confidence 688999999999999999999999999999999999999999999999886532111 0145678999
Q ss_pred EEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCC
Q 008294 395 FKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDAD 474 (571)
Q Consensus 395 ~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~ 474 (571)
||+.+|+.+|.++|.|||+|+++.+-.++|.+....+.+.+++.+.+++...|.++.||+|...+|++...+|||+..+.
T Consensus 340 fkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdtivask 419 (753)
T KOG0464|consen 340 FKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDTIVASK 419 (753)
T ss_pred hhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceeeccCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996332
Q ss_pred ------------------------CcccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEE
Q 008294 475 ------------------------HPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTV 530 (571)
Q Consensus 475 ------------------------~~~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~i 530 (571)
....+..+++|.||+++.|||.+...+..+..+|+-|..||||+.+..|+++||++
T Consensus 420 asa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqti 499 (753)
T KOG0464|consen 420 ASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTI 499 (753)
T ss_pred hhHHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceE
Confidence 12346788999999999999999999999999999999999999999999999999
Q ss_pred EEEecHHHHHHHHHHHHhHhCceEEEecCeEEEEEEEec
Q 008294 531 IEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVKAFLKS 569 (571)
Q Consensus 531 l~g~GelhLev~~~rL~~~~~vev~~~~p~i~yke~~~~ 569 (571)
++||||||+|.+.+|++++||+++-+++.+|-|||+|.+
T Consensus 500 l~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~ 538 (753)
T KOG0464|consen 500 LCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILE 538 (753)
T ss_pred EeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 13
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=8.7e-70 Score=613.35 Aligned_cols=434 Identities=32% Similarity=0.476 Sum_probs=359.9
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----cCeEEEEEc
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----NKHRINIID 161 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~----~~~~i~liD 161 (571)
..+++|||+++||+|+|||||+++|++.+|.+... ...+++++|+.++|++||+|+..+..++.| +++.++|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liD 93 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEE--LAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLID 93 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchh--hcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEc
Confidence 45679999999999999999999999999987663 233467899999999999999999888877 478999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCccee
Q 008294 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (571)
Q Consensus 162 TPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 241 (571)
||||.+|..++.++++.+|++|+|||+.+|+..+++.+|+.+...++|.++|+||+|+..+++....+++++.++...
T Consensus 94 tPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~-- 171 (731)
T PRK07560 94 TPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKII-- 171 (731)
T ss_pred CCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999989999999999999988776666666555443210
Q ss_pred eeccCCCCCCcceeeeccc-------------ceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q 008294 242 VQLPVGAEDNFKGVVDLVK-------------MKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAME 308 (571)
Q Consensus 242 ~~~pi~~~~~~~~~id~~~-------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e 308 (571)
.++.++++.+. ...+.|.+...+|.+... .+.+..++. +++++
T Consensus 172 --------~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~---------------~~~~~~~~~-~~l~e 227 (731)
T PRK07560 172 --------KDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVP---------------MMQKTGIKF-KDIID 227 (731)
T ss_pred --------HHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHH---------------HHHHhCCCH-HHHHH
Confidence 01111111111 122445555556655432 233444444 56888
Q ss_pred HHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccc
Q 008294 309 SYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERA 383 (571)
Q Consensus 309 ~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~ 383 (571)
.|.++ ..+++. .++|++ +.|||+|++++|+|.+++..+.. ...++.....+.
T Consensus 228 ~~~~~---~~~~l~----------~~~Pv~----------~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (731)
T PRK07560 228 YYEKG---KQKELA----------EKAPLH----------EVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLN 284 (731)
T ss_pred HHhcC---CHHHHH----------hhccch----------hHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeec
Confidence 88554 234432 126874 78999999999999876543211 011122234577
Q ss_pred CCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCC
Q 008294 384 ASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD 463 (571)
Q Consensus 384 ~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~ 463 (571)
|++++|++++|||+..|++.|+++|+|||||+|++||.|++.+.+..+++++|+.++|++..++++|.|||||+|.|+++
T Consensus 285 ~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~ 364 (731)
T PRK07560 285 CDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKD 364 (731)
T ss_pred cCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEEcccc
Confidence 89999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred ccccceecCCCCcccccCC-CCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHH
Q 008294 464 TITGETLCDADHPILLERM-DFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEII 542 (571)
Q Consensus 464 ~~~Gdtl~~~~~~~~l~~~-~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~ 542 (571)
+.+||||++.....++.++ .+|+|+++++|+|.++.|++||.++|++|++|||+|++++|++|||++|+||||+|||++
T Consensus 365 ~~~GdtL~~~~~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~ 444 (731)
T PRK07560 365 ARAGETVVSVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVI 444 (731)
T ss_pred cccCCEEeCCCccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHH
Confidence 9999999988777777776 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhCceEEEecCeEEEEEEEecC
Q 008294 543 VDRLKREFKKLMLVHPKSTIVKAFLKSL 570 (571)
Q Consensus 543 ~~rL~~~~~vev~~~~p~i~yke~~~~~ 570 (571)
++||+++|++++++++|.|.|||||.+.
T Consensus 445 ~~rL~~~~~vev~~~~p~V~yrETI~~~ 472 (731)
T PRK07560 445 TYRIKRDYGIEVVTSEPIVVYRETVRGK 472 (731)
T ss_pred HHHHHHHhCCceEecCCEEEEEEecccC
Confidence 9999999999999999999999999763
No 14
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=3.1e-69 Score=607.32 Aligned_cols=434 Identities=33% Similarity=0.463 Sum_probs=362.5
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEE----EeecCeEEEEEc
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATT----TYWNKHRINIID 161 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~----~~~~~~~i~liD 161 (571)
..+++|||+++||.|+|||||+++|++.+|.+.+. ...+++++|+.++|+++|+|+.....+ +.|++++++|||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~--~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liD 92 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEE--LAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLID 92 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchh--cCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEe
Confidence 44578999999999999999999999999887653 233446799999999999999987665 567889999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCccee
Q 008294 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (571)
Q Consensus 162 TPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 241 (571)
||||.+|..++..+++.+|++|+|+|+.+|+..+++.+|+.+...++|.++|+||+|+..+++..+++++++.|+.....
T Consensus 93 TPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~ 172 (720)
T TIGR00490 93 TPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITE 172 (720)
T ss_pred CCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHH
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999998765544
Q ss_pred eeccCCCC--CCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhc-------
Q 008294 242 VQLPVGAE--DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLE------- 312 (571)
Q Consensus 242 ~~~pi~~~--~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~------- 312 (571)
++.++... +.+. ..+++..++.++.+++.|++
T Consensus 173 v~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~f~s~~~~~~~~~~~ 213 (720)
T TIGR00490 173 VNKLIKAMAPEEFR---------------------------------------DKWKVRVEDGSVAFGSAYYNWAISVPS 213 (720)
T ss_pred HHhhhhccCCHHHh---------------------------------------hceEechhhCCHHHHhhhhcccccchh
Confidence 44443211 1110 11122233344455555544
Q ss_pred --CCCCCHHHHHHHHHhhcccC--cceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccc
Q 008294 313 --GNEPDEETIKKLIRKGTIAG--SFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERA 383 (571)
Q Consensus 313 --~~~~~~~~l~~~l~~~~~~~--~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~ 383 (571)
+..++.+++.+.+....... .++|+ ++.|||+|++++|+|.+++..+.. ..+++.....+.
T Consensus 214 ~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv----------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (720)
T TIGR00490 214 MKKTGIGFKDIYKYCKEDKQKELAKKSPL----------HQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLN 283 (720)
T ss_pred HhhcCCCHHHHHHHHHhccHHHHhhhhhH----------HHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhccc
Confidence 44455556655555444333 47788 489999999999999875432211 111122345678
Q ss_pred CCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCC
Q 008294 384 ASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD 463 (571)
Q Consensus 384 ~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~ 463 (571)
|++++|++++|||+..+++.|+++++|||||+|++||.|++.+.+..++|++|+.++|.+.+++++|.|||||+|.|+++
T Consensus 284 ~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~ 363 (720)
T TIGR00490 284 CDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKD 363 (720)
T ss_pred CCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEECccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceecCCCCcc-cccCC-CCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHH
Q 008294 464 TITGETLCDADHPI-LLERM-DFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEI 541 (571)
Q Consensus 464 ~~~Gdtl~~~~~~~-~l~~~-~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev 541 (571)
+.+|||||+.+.+. .++++ .+|+|+++++|+|.+++|++||.++|++|++|||+|++++|+||||++|+||||+|||+
T Consensus 364 ~~~GdtL~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei 443 (720)
T TIGR00490 364 AVAGETICTTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEI 443 (720)
T ss_pred cccCceeecCCcccccCcccccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHH
Confidence 99999999876543 45655 47899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhCceEEEecCeEEEEEEEecC
Q 008294 542 IVDRLKREFKKLMLVHPKSTIVKAFLKSL 570 (571)
Q Consensus 542 ~~~rL~~~~~vev~~~~p~i~yke~~~~~ 570 (571)
+++||+++||+++++++|.|.|||||.+.
T Consensus 444 ~~~rL~~~~~vev~~~~P~V~YrETi~~~ 472 (720)
T TIGR00490 444 IVEKIREDYGLDVETSPPIVVYRETVTGT 472 (720)
T ss_pred HHHHHHHHhCCceeecCCEEEEEEecccc
Confidence 99999999999999999999999999763
No 15
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1.4e-66 Score=569.18 Aligned_cols=367 Identities=33% Similarity=0.496 Sum_probs=331.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
+|||+|+||+|||||||+++|++.+|.+...+.+.. +++|+.++|+++|+|+......+.|++++++|||||||.||.
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~--~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~ 78 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE--RVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG 78 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCccccccee--ecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH
Confidence 589999999999999999999999998877665543 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCCCC
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAE 249 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~ 249 (571)
.++.++++.+|++++|||+.+|+..|++.+|..+...++|.++|+||+|+..+++.++++++.+.+..-
T Consensus 79 ~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~----------- 147 (594)
T TIGR01394 79 GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAEL----------- 147 (594)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh-----------
Confidence 999999999999999999999999999999999999999999999999998877777777776654210
Q ss_pred CCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhc
Q 008294 250 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 329 (571)
Q Consensus 250 ~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~ 329 (571)
|. ++
T Consensus 148 ----------------------g~-----------------------------~~------------------------- 151 (594)
T TIGR01394 148 ----------------------GA-----------------------------DD------------------------- 151 (594)
T ss_pred ----------------------cc-----------------------------cc-------------------------
Confidence 00 00
Q ss_pred ccCcceeeeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEee
Q 008294 330 IAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 399 (571)
Q Consensus 330 ~~~~~~Pv~~~Sa~~~~----------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 399 (571)
....+|++++||++|. |+..|++.|.+++|+|.. ++++||+++|++++.
T Consensus 152 -e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~--------------------~~~~pl~~~V~~i~~ 210 (594)
T TIGR01394 152 -EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKG--------------------DLDEPLQMLVTNLDY 210 (594)
T ss_pred -ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCC--------------------CCCCCEEEEEEEEEe
Confidence 0112589999999996 799999999999999953 247899999999999
Q ss_pred cCCCceEEEEEEecceeCCCCEEEeCCCC---ceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCc
Q 008294 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP 476 (571)
Q Consensus 400 d~~~G~i~~~rV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~ 476 (571)
++++|++++|||++|+|++||.|++.+.+ ..++|++|+.+.|.++.++++|.|||||+|+|++++.+|||||+.+.+
T Consensus 211 d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~~ 290 (594)
T TIGR01394 211 DEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVP 290 (594)
T ss_pred eCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCcc
Confidence 99999999999999999999999988753 257899999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCceEEEEEEeCCC---CCHHH------HHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHH
Q 008294 477 ILLERMDFPDPVIKVAIEPKTK---ADIDK------MANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLK 547 (571)
Q Consensus 477 ~~l~~~~~~~Pv~~~avep~~~---~d~~k------l~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~ 547 (571)
.+++++.+++|+++++++|.+. +++.| |.++|.|++++||+|+++.++++++++|+|+|||||+|++++||
T Consensus 291 ~~l~~~~~~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lr 370 (594)
T TIGR01394 291 EALPTITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMR 370 (594)
T ss_pred ccCCCCCCCCCeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHh
Confidence 9999999999999999999865 44444 99999999999999999999999999999999999999999999
Q ss_pred hHhCceEEEecCeEEEEEEEe
Q 008294 548 REFKKLMLVHPKSTIVKAFLK 568 (571)
Q Consensus 548 ~~~~vev~~~~p~i~yke~~~ 568 (571)
++ |+|+.+++|+|+||| |.
T Consensus 371 re-g~e~~~~~P~V~yre-i~ 389 (594)
T TIGR01394 371 RE-GFELQVGRPQVIYKE-ID 389 (594)
T ss_pred cc-CceEEEeCCEEEEEe-CC
Confidence 99 999999999999999 64
No 16
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=1.1e-65 Score=561.02 Aligned_cols=368 Identities=30% Similarity=0.464 Sum_probs=332.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+++|||+|+||+|+|||||+++|++.+|.+...+.. ..+++|+.+.|+++|+|+......+.|+++.+++||||||.+
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~--~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d 80 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAET--QERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD 80 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCccccccc--ceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch
Confidence 468999999999999999999999888876654432 238899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCC
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 247 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (571)
|..++..+++.+|++|+|||+.+|+..+++.+|..+...++|.++|+||+|+..+++.++++++.+.|..-
T Consensus 81 f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l--------- 151 (607)
T PRK10218 81 FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNL--------- 151 (607)
T ss_pred hHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhcc---------
Confidence 99999999999999999999999999999999999999999999999999999888888888887765310
Q ss_pred CCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHh
Q 008294 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (571)
Q Consensus 248 ~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~ 327 (571)
+. .
T Consensus 152 ---------~~----------------------------------------------------------~---------- 154 (607)
T PRK10218 152 ---------DA----------------------------------------------------------T---------- 154 (607)
T ss_pred ---------Cc----------------------------------------------------------c----------
Confidence 00 0
Q ss_pred hcccCcceeeeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEE
Q 008294 328 GTIAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 397 (571)
Q Consensus 328 ~~~~~~~~Pv~~~Sa~~~~----------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~ 397 (571)
....-+|++++||++|. |+..||+.|.+++|+|.. ++++||.++||++
T Consensus 155 --~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~--------------------~~~~Pl~~~V~k~ 212 (607)
T PRK10218 155 --DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDV--------------------DLDGPFQMQISQL 212 (607)
T ss_pred --ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEee
Confidence 00012689999999998 689999999999999953 2478999999999
Q ss_pred eecCCCceEEEEEEecceeCCCCEEEeCCC-Cc--eeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCC
Q 008294 398 MSDPFVGSLTFVRVYAGTLSAGSYVLNANK-GK--KERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDAD 474 (571)
Q Consensus 398 ~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~-~~--~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~ 474 (571)
+.++++|++++|||++|+|++||.|++.+. ++ .++|++|+.+.|.++.++++|.|||||+++|++++.+|||||+.+
T Consensus 213 ~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~ 292 (607)
T PRK10218 213 DYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQ 292 (607)
T ss_pred EecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecCC
Confidence 999999999999999999999999998765 43 588999999999999999999999999999999999999999998
Q ss_pred CcccccCCCCCCceEEEEEEeCC---CCCHHHHHH---HHHHHHh---hCCeeEEEEeCCCCeEEEEEecHHHHHHHHHH
Q 008294 475 HPILLERMDFPDPVIKVAIEPKT---KADIDKMAN---GLIKLAQ---EDPSFHFSRDEEINQTVIEGMGELHLEIIVDR 545 (571)
Q Consensus 475 ~~~~l~~~~~~~Pv~~~avep~~---~~d~~kl~~---~L~kl~~---eDpsl~~~~~~etge~il~g~GelhLev~~~r 545 (571)
.+..++++++++|++++++.|++ .+|+.|+.. +|++|.+ +||+|+++.++++++++|+|+|||||+|++++
T Consensus 293 ~~~~l~~~~~~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~ 372 (607)
T PRK10218 293 NVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIEN 372 (607)
T ss_pred CcccCCCCCCCCCeEEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHH
Confidence 88889999999999999999999 789999865 5666666 99999999999999999999999999999999
Q ss_pred HHhHhCceEEEecCeEEEEEE
Q 008294 546 LKREFKKLMLVHPKSTIVKAF 566 (571)
Q Consensus 546 L~~~~~vev~~~~p~i~yke~ 566 (571)
||++ |+|+.+++|+|+|||+
T Consensus 373 lrre-g~e~~~~~P~V~yret 392 (607)
T PRK10218 373 MRRE-GFELAVSRPKVIFREI 392 (607)
T ss_pred HHhC-CceEEEeCCEEEEEEE
Confidence 9999 9999999999999997
No 17
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=3.7e-64 Score=552.10 Aligned_cols=362 Identities=31% Similarity=0.453 Sum_probs=324.0
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-----CeEEEEEc
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----KHRINIID 161 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~i~liD 161 (571)
.+++|||+|+||+|+|||||+++|++.+|.+...+ .+++++|+.++|+++|+|+......+.|. ++.++|||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~---~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiD 80 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSERE---MKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLID 80 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccc---cccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEE
Confidence 45789999999999999999999999988776532 35789999999999999999998888875 68899999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCccee
Q 008294 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (571)
Q Consensus 162 TPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 241 (571)
||||.+|..++.++++.+|++|+|||+++|++.++...|..+...++|+++|+||+|+..++..++.+++++.++..
T Consensus 81 TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~--- 157 (600)
T PRK05433 81 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID--- 157 (600)
T ss_pred CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC---
Confidence 99999999999999999999999999999999999999999888999999999999987665544444444433220
Q ss_pred eeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHH
Q 008294 242 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETI 321 (571)
Q Consensus 242 ~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l 321 (571)
T Consensus 158 -------------------------------------------------------------------------------- 157 (600)
T PRK05433 158 -------------------------------------------------------------------------------- 157 (600)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecC
Q 008294 322 KKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP 401 (571)
Q Consensus 322 ~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~ 401 (571)
..+++++||++|.|+++|+++|.+.+|+|.. ++++|+.++||+++.|+
T Consensus 158 ------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~--------------------~~~~pl~~~Vfd~~~d~ 205 (600)
T PRK05433 158 ------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPKG--------------------DPDAPLKALIFDSWYDN 205 (600)
T ss_pred ------------cceEEEEecCCCCCHHHHHHHHHHhCccccC--------------------CCCCCceEEEEEEEecC
Confidence 0137888999999999999999999999964 24789999999999999
Q ss_pred CCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEe-C---CCCccccceecCCCCc-
Q 008294 402 FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHP- 476 (571)
Q Consensus 402 ~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~-g---l~~~~~Gdtl~~~~~~- 476 (571)
++|.++++||++|+|++||.|++.+++..++|++|+.+.+ +..+++++.||||+.+. | ++++.+||||++...+
T Consensus 206 ~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~ 284 (600)
T PRK05433 206 YRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPA 284 (600)
T ss_pred CCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCcc
Confidence 9999999999999999999999999999999999996665 78999999999998884 4 4568899999988776
Q ss_pred -ccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEE-----ecHHHHHHHHHHHHhHh
Q 008294 477 -ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREF 550 (571)
Q Consensus 477 -~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g-----~GelhLev~~~rL~~~~ 550 (571)
.+++++++|+|+++++++|.+.+|+++|.++|.+|+.|||||.++ +||++.+++| ||+|||||+++||+++|
T Consensus 285 ~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~ 362 (600)
T PRK05433 285 EEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLEREF 362 (600)
T ss_pred ccCCCCCCCCCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE--ecCCcceecceEeecHHHHHHHHHHHHHHHhh
Confidence 478889999999999999999999999999999999999999997 6899999999 99999999999999999
Q ss_pred CceEEEecCeEEEEEEEec
Q 008294 551 KKLMLVHPKSTIVKAFLKS 569 (571)
Q Consensus 551 ~vev~~~~p~i~yke~~~~ 569 (571)
|+++.+++|+|.|||+|++
T Consensus 363 ~~~v~~~~P~V~Yreti~~ 381 (600)
T PRK05433 363 DLDLITTAPSVVYEVTLTD 381 (600)
T ss_pred CceEEEecCEEEEEEEEeC
Confidence 9999999999999999985
No 18
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=2.8e-63 Score=544.74 Aligned_cols=360 Identities=30% Similarity=0.475 Sum_probs=319.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--C---eEEEEEcCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--K---HRINIIDTP 163 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~---~~i~liDTP 163 (571)
++|||+|+||+|+|||||+++|++.+|.+... ..+.+++|+.++|+++|+|+......+.|. + +.++|||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~---~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTP 78 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISER---EMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 78 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccc---cccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECC
Confidence 58999999999999999999999988876543 235688999999999999999998888774 2 789999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeee
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (571)
||.+|..++.++++.+|++|+|+|+++|++.++...|..+...++|+++|+||+|+..++..++.+++.+.++..
T Consensus 79 G~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~----- 153 (595)
T TIGR01393 79 GHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLD----- 153 (595)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC-----
Confidence 999999999999999999999999999999999999988888899999999999987654444444444333210
Q ss_pred ccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHH
Q 008294 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (571)
Q Consensus 244 ~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~ 323 (571)
T Consensus 154 -------------------------------------------------------------------------------- 153 (595)
T TIGR01393 154 -------------------------------------------------------------------------------- 153 (595)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCC
Q 008294 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFV 403 (571)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~ 403 (571)
..+++++||++|.|+++|++.|.+.+|+|.. ++++|+.++||+++.|+++
T Consensus 154 ----------~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~--------------------~~~~pl~~~V~~~~~d~~~ 203 (595)
T TIGR01393 154 ----------ASEAILASAKTGIGIEEILEAIVKRVPPPKG--------------------DPDAPLKALIFDSHYDNYR 203 (595)
T ss_pred ----------cceEEEeeccCCCCHHHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEEEEEeCCC
Confidence 0137889999999999999999999999964 2478999999999999999
Q ss_pred ceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEe-C---CCCccccceecCCCCcc--
Q 008294 404 GSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHPI-- 477 (571)
Q Consensus 404 G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~-g---l~~~~~Gdtl~~~~~~~-- 477 (571)
|.++++||++|+|++||.|++.+.++.++|++|..+.+.. .+++++.||||+.+. | ++++.+|||||+.+.+.
T Consensus 204 G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~~ 282 (595)
T TIGR01393 204 GVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAKE 282 (595)
T ss_pred cEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCCCCEEECCCCcccc
Confidence 9999999999999999999999999899999999777665 999999999998884 4 45688999999987764
Q ss_pred cccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEE-----ecHHHHHHHHHHHHhHhCc
Q 008294 478 LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFKK 552 (571)
Q Consensus 478 ~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g-----~GelhLev~~~rL~~~~~v 552 (571)
+++++++++|+++.+++|.+.+|++||.++|.||++|||+|.++. ||++.+++| ||+|||||+++||+++||+
T Consensus 283 ~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~~--e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~ 360 (595)
T TIGR01393 283 PLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYEP--ESSPALGFGFRCGFLGLLHMEIIQERLEREFNL 360 (595)
T ss_pred CCCCCcCCCcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEEe--cCCcccccccEEeeeeHHHHHHHHHHHHHHhCC
Confidence 788899999999999999999999999999999999999999984 799887774 9999999999999999999
Q ss_pred eEEEecCeEEEEEEEec
Q 008294 553 LMLVHPKSTIVKAFLKS 569 (571)
Q Consensus 553 ev~~~~p~i~yke~~~~ 569 (571)
++.+++|+|.|||+|++
T Consensus 361 ~v~~~~P~V~Yreti~~ 377 (595)
T TIGR01393 361 DLITTAPSVIYRVYLTN 377 (595)
T ss_pred eeEEecCEEEEEEEecC
Confidence 99999999999999975
No 19
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-63 Score=498.83 Aligned_cols=454 Identities=29% Similarity=0.471 Sum_probs=381.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecC----cccccchhhhhhhceeEeeceEEEeecCeEEEEEcCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG----TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g----~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTP 163 (571)
.+.|+.|||.|+++|||||.+.|+...|++...|.+... .+.+||++.|++|||++.++...++++++.+||+|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 457899999999999999999999999999888877533 3679999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeee
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (571)
||.||+..+.+.|..+|.+|.||||..|+++||+.+++.|+.+++|++-++||+|+...++-+++++|.+.|++.+.|+.
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pit 169 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPIT 169 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcceeeecccceeEEecCCCCCceeee---ec--ccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCH
Q 008294 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAY---ED--IPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDE 318 (571)
Q Consensus 244 ~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~---~~--~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~ 318 (571)
+|||.+..|+|++|+....-..|.+...+..... .. .|+.....-+..++.+.|.+ +-+.+ .+.+.+.
T Consensus 170 WPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~----EL~~~---a~~~Fd~ 242 (528)
T COG4108 170 WPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREEL----ELVQG---AGNEFDL 242 (528)
T ss_pred ccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHH----HHHHh---hccccCH
Confidence 9999999999999999998888876533222221 11 11111111111222222211 00000 0112222
Q ss_pred HHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEe
Q 008294 319 ETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIM 398 (571)
Q Consensus 319 ~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~ 398 (571)
..+..+...|||+|||++|.||+.||+.++++.|+|..+...... +++ .+..|.+||||+.
T Consensus 243 --------~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~----------v~p-~e~kfsGFVFKIQ 303 (528)
T COG4108 243 --------EAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTRE----------VEP-TEDKFSGFVFKIQ 303 (528)
T ss_pred --------HHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCc----------ccC-CCCccceEEEEEE
Confidence 234557788999999999999999999999999999875542211 111 1334999999997
Q ss_pred ---ecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCC
Q 008294 399 ---SDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADH 475 (571)
Q Consensus 399 ---~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~ 475 (571)
...++.+++|.||+||.+..|+++...++|+..++..-..+++..++.|++|.||||++|.+-..+..|||++.. .
T Consensus 304 ANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t~G-e 382 (528)
T COG4108 304 ANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFTEG-E 382 (528)
T ss_pred cCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceeecC-c
Confidence 244678999999999999999999999999999999999999999999999999999999776668899999976 6
Q ss_pred cccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEE
Q 008294 476 PILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLML 555 (571)
Q Consensus 476 ~~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~ 555 (571)
...+.+++...|-+...|..+++....+|..||++|++|-.. ++.....+++.++...|.||+||+.+||+++|++|+.
T Consensus 383 ~l~f~giP~FaPE~frrvr~kd~~K~Kql~Kgl~QL~eEGav-Q~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY~ve~~ 461 (528)
T COG4108 383 KLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLAEEGAV-QVFKPLDGNDLILGAVGQLQFEVVQARLKNEYNVEAV 461 (528)
T ss_pred eeeecCCCCCCHHHHHHHhcCChHHHHHHHHHHHHHhhcCee-EEEecCCCCCceEEeeeeeehHHHHHHHHhhhCCeEE
Confidence 788888888899999999999999999999999999999984 5656567899999999999999999999999999999
Q ss_pred EecCeEEEEEEEec
Q 008294 556 VHPKSTIVKAFLKS 569 (571)
Q Consensus 556 ~~~p~i~yke~~~~ 569 (571)
+.+..+...-||..
T Consensus 462 ~e~~~~~~aRWi~~ 475 (528)
T COG4108 462 FEPVNFSTARWIEC 475 (528)
T ss_pred EeeccceEEEEecC
Confidence 99999999888864
No 20
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-62 Score=492.79 Aligned_cols=469 Identities=28% Similarity=0.379 Sum_probs=365.6
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-------------
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW------------- 152 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~------------- 152 (571)
...++||+.+|.|+++|||||.+.|+...|.+.. ....+++++|..++|++||+|+.+..+++.+
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~--akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISA--AKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeee--cccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 3467999999999999999999999987776542 2234568999999999999999999998865
Q ss_pred ---cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccc----hh
Q 008294 153 ---NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN----FF 225 (571)
Q Consensus 153 ---~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~----~~ 225 (571)
+++.|||||.|||.||++++-.++|..|++++|||+.+|+..||+.+++++....+..++|+||+|+.--+ .+
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~E 172 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQE 172 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999985422 33
Q ss_pred hhHHHHHHHhCCcceeeeccCCCCCCcceeeecc-cceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCH
Q 008294 226 RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLV-KMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDD 304 (571)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~ 304 (571)
++.+.+++....-.+.+. ...++.+ |.+.+. ....+.|.+...||.|++..|++.|..++......++..+|...-
T Consensus 173 eLyqtf~R~VE~vNviis--Ty~d~~~-g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~ 249 (842)
T KOG0469|consen 173 ELYQTFQRIVENVNVIIS--TYGDGPM-GDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNF 249 (842)
T ss_pred HHHHHHHHHHhcccEEEE--ecccCCc-CceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccc
Confidence 444444433322111111 1111222 233333 344678999999999999999999999988777788877775210
Q ss_pred ---------------------------------HHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCC----
Q 008294 305 ---------------------------------EAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKG---- 347 (571)
Q Consensus 305 ---------------------------------~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~G---- 347 (571)
.+.+..++ .-.+|+...+.+.-. .+.+--+.+.|
T Consensus 250 f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN---~kkeei~~llekl~v------~lk~~~kd~eGK~Ll 320 (842)
T KOG0469|consen 250 FNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMN---FKKEEIATLLEKLEV------TLKGDEKDLEGKALL 320 (842)
T ss_pred cCccCCcccccccccccCccccceeEEeechHHHHHHHHhh---ccHHHHHHHHHHhcc------eeccccccccchHHH
Confidence 01111111 112333333322211 11112222222
Q ss_pred ----------hHHHHHHHHHhCCCCCCCCCCCCC-----CCCCccccccccCCCCCCeEEEEEEEeecCCC-ceEEEEEE
Q 008294 348 ----------VQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFV-GSLTFVRV 411 (571)
Q Consensus 348 ----------v~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~-G~i~~~rV 411 (571)
-+.||++|.-++|+|..++.++.. ..+++.......||+++|+.+||.|+...... .+++||||
T Consensus 321 K~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRV 400 (842)
T KOG0469|consen 321 KVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRV 400 (842)
T ss_pred HHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeee
Confidence 368999999999999999988733 23455567778999999999999999855444 46899999
Q ss_pred ecceeCCCCEEEeC----CCCcee-----ecceEEEeccCceeecCeecCCCEEEEeCCCC-ccccceecCCCCcccccC
Q 008294 412 YAGTLSAGSYVLNA----NKGKKE-----RIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLCDADHPILLER 481 (571)
Q Consensus 412 ~sG~l~~gd~v~~~----~~~~~~-----~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~-~~~Gdtl~~~~~~~~l~~ 481 (571)
|||++..|++++.. ..|+++ .|.+...|+|+..++++.++||+|+++.|+++ +.++.||...+....++.
T Consensus 401 FsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNmrv 480 (842)
T KOG0469|consen 401 FSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNMRV 480 (842)
T ss_pred ecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhhccceE
Confidence 99999999999953 334443 26666789999999999999999999999998 445558877777777888
Q ss_pred CCCC-CceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHh-CceEEEecC
Q 008294 482 MDFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KKLMLVHPK 559 (571)
Q Consensus 482 ~~~~-~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~-~vev~~~~p 559 (571)
++|. .|+++++||++++.|++||.++|++|++.||...+.+ +|+||++|.|.||||||+|+.+|++.| +|.++.++|
T Consensus 481 MKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~-~esGehiiAgaGeLHLEICLkDLeedhA~iPlk~sdP 559 (842)
T KOG0469|consen 481 MKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCII-EESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDP 559 (842)
T ss_pred EEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEe-ccCCceEEeccchhhHHHHHhhHhhcccCCceecCCC
Confidence 8876 8999999999999999999999999999999999998 579999999999999999999999999 899999999
Q ss_pred eEEEEEEEec
Q 008294 560 STIVKAFLKS 569 (571)
Q Consensus 560 ~i~yke~~~~ 569 (571)
-|+|||+|.+
T Consensus 560 vVsYrEtvs~ 569 (842)
T KOG0469|consen 560 VVSYRETVSE 569 (842)
T ss_pred eeeeeccccc
Confidence 9999999864
No 21
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=5e-59 Score=467.83 Aligned_cols=368 Identities=32% Similarity=0.509 Sum_probs=329.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
..+||||||.|++||||||++.||.++|.......+. .++||+...|++||+|+-.....+.|++.+||++|||||.|
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~--ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD 80 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVA--ERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD 80 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchh--hhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC
Confidence 4589999999999999999999999999887755543 48899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHh---CCcceeeec
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNL---GAKPLVVQL 244 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l---~~~~~~~~~ 244 (571)
|.+++++.+...|+++++|||.+|..+||+.++..+.+.+++.|+|+||+|++.++++++++++.+.| ++..
T Consensus 81 FGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~d----- 155 (603)
T COG1217 81 FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATD----- 155 (603)
T ss_pred ccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCCh-----
Confidence 99999999999999999999999999999999999999999999999999999999999888877654 2110
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
+
T Consensus 156 ------------------------------------------------------------e------------------- 156 (603)
T COG1217 156 ------------------------------------------------------------E------------------- 156 (603)
T ss_pred ------------------------------------------------------------h-------------------
Confidence 0
Q ss_pred HHhhcccCcceeeeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEE
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLA 394 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~----------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 394 (571)
.--+|++..||..|. .+..|++.|.+|+|.|.. +.++||.++|
T Consensus 157 -------QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~--------------------~~d~PlQ~qv 209 (603)
T COG1217 157 -------QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG--------------------DLDEPLQMQV 209 (603)
T ss_pred -------hCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC--------------------CCCCCeEEEE
Confidence 011477777777663 377899999999999974 4689999999
Q ss_pred EEEeecCCCceEEEEEEecceeCCCCEEEeCCCC---ceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceec
Q 008294 395 FKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLC 471 (571)
Q Consensus 395 ~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~ 471 (571)
+.+.+++|+|++..|||++|++++|+.|.....+ ...||.+++-..|-++.++++|.|||||+|+|+.++..|||+|
T Consensus 210 t~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~ 289 (603)
T COG1217 210 TQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTIC 289 (603)
T ss_pred EeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEcCccccccccccc
Confidence 9999999999999999999999999999865433 3468999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCCCceEEEEEEeCCCC---------CHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHH
Q 008294 472 DADHPILLERMDFPDPVIKVAIEPKTKA---------DIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEII 542 (571)
Q Consensus 472 ~~~~~~~l~~~~~~~Pv~~~avep~~~~---------d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~ 542 (571)
+++.+..++.+.+-+|.+++.+..++.. --.++.+.|.+-.+.+.+|+++-.++-..+.++|.|||||-|+
T Consensus 290 d~~~~~aLp~l~iDePTlsMtf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsIL 369 (603)
T COG1217 290 DPDNPEALPALSVDEPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSIL 369 (603)
T ss_pred CCCCccCCCCcccCCCceEEEEEecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHH
Confidence 9999999999999999999999887654 2568899999999999999998766668899999999999999
Q ss_pred HHHHHhHhCceEEEecCeEEEEEEEecC
Q 008294 543 VDRLKREFKKLMLVHPKSTIVKAFLKSL 570 (571)
Q Consensus 543 ~~rL~~~~~vev~~~~p~i~yke~~~~~ 570 (571)
++.+||+ |.|+.++.|+|+||| |.+.
T Consensus 370 iE~MRRE-GfEl~VsrP~Vi~ke-idG~ 395 (603)
T COG1217 370 IENMRRE-GFELQVSRPEVIIKE-IDGV 395 (603)
T ss_pred HHHhhhc-ceEEEecCceEEEEe-cCCc
Confidence 9999999 999999999999999 5543
No 22
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-58 Score=473.21 Aligned_cols=369 Identities=28% Similarity=0.435 Sum_probs=323.8
Q ss_pred ccCCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC---eEEEE
Q 008294 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---HRINI 159 (571)
Q Consensus 83 ~~~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~---~~i~l 159 (571)
...|.+++||++||.|++||||||.++|+..+|.+.... ....++|....|++||||+.....++.|.+ +.+|+
T Consensus 53 ~~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~---~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNL 129 (650)
T KOG0462|consen 53 SLDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNI---GQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNL 129 (650)
T ss_pred ccCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCC---chhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEe
Confidence 345668999999999999999999999999999665432 235889999999999999999999999988 99999
Q ss_pred EcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcc
Q 008294 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKP 239 (571)
Q Consensus 160 iDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~ 239 (571)
||||||.||..|+.+.+..+|++|+||||.+|++.||...+..+.++++.+|.|+||+|++.++.+++..++.+.|+..+
T Consensus 130 IDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~ 209 (650)
T KOG0462|consen 130 IDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPP 209 (650)
T ss_pred ecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876521
Q ss_pred eeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHH
Q 008294 240 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEE 319 (571)
Q Consensus 240 ~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~ 319 (571)
T Consensus 210 -------------------------------------------------------------------------------- 209 (650)
T KOG0462|consen 210 -------------------------------------------------------------------------------- 209 (650)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEee
Q 008294 320 TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 399 (571)
Q Consensus 320 ~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 399 (571)
-+++.+||++|.|+.++|++|++.+|+|... .++||.+++|.++.
T Consensus 210 ---------------~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~--------------------~d~plr~Lifds~y 254 (650)
T KOG0462|consen 210 ---------------AEVIYVSAKTGLNVEELLEAIIRRVPPPKGI--------------------RDAPLRMLIFDSEY 254 (650)
T ss_pred ---------------cceEEEEeccCccHHHHHHHHHhhCCCCCCC--------------------CCcchHHHhhhhhh
Confidence 0478899999999999999999999999762 48999999999999
Q ss_pred cCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEecc--CceeecCeecCCCEEEEeC-CCCccccceecCCC--
Q 008294 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHA--NSREDVKVALAGDIIALAG-LKDTITGETLCDAD-- 474 (571)
Q Consensus 400 d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g--~~~~~v~~a~aGdiv~i~g-l~~~~~Gdtl~~~~-- 474 (571)
|.|.|.++++||..|.+++||+|....+++...++.+-.|.- -...+++...+|+|++-.+ +++...|||++...
T Consensus 255 D~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~ 334 (650)
T KOG0462|consen 255 DEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVT 334 (650)
T ss_pred hhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecccC
Confidence 999999999999999999999999888887766666555553 3333444455566666555 78899999999876
Q ss_pred Cc-ccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCC---e-EEEEEecHHHHHHHHHHHHhH
Q 008294 475 HP-ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEIN---Q-TVIEGMGELHLEIIVDRLKRE 549 (571)
Q Consensus 475 ~~-~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etg---e-~il~g~GelhLev~~~rL~~~ 549 (571)
.+ ..++.++...|++++...|.+..|.+.|..++.||+.+|+++.+..+ .++ + +.++++|.|||+|+.+||++|
T Consensus 335 ~~v~tl~~~~~~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~-~s~aLg~gwr~gflG~LHm~Vf~erle~E 413 (650)
T KOG0462|consen 335 KAVETLPGFEPTKPMVFVGLFPLDGSDYETLRDAIERLVLNDESVTVIKE-SSGALGQGWRLGFLGLLHMEVFIERLERE 413 (650)
T ss_pred cccCcCCCCCCCcceEEeccccCccchhhhHHHHHHHHhcccccceeeec-CCcccccceEeeccceeeHHHHHHHHHHh
Confidence 33 34666667799999999999999999999999999999999999874 344 3 579999999999999999999
Q ss_pred hCceEEEecCeEEEEEEEecC
Q 008294 550 FKKLMLVHPKSTIVKAFLKSL 570 (571)
Q Consensus 550 ~~vev~~~~p~i~yke~~~~~ 570 (571)
||.++.+++|+|.||-...+.
T Consensus 414 yg~elivt~PtV~Yr~~~~~~ 434 (650)
T KOG0462|consen 414 YGAELIVTPPTVPYRVVYSNG 434 (650)
T ss_pred cCceeeecCCcceEEEEecCC
Confidence 999999999999999887764
No 23
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2e-57 Score=457.70 Aligned_cols=364 Identities=31% Similarity=0.457 Sum_probs=326.6
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-----CeEEEE
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----KHRINI 159 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~i~l 159 (571)
.+.+++||++||.|.+||||||.++|+..+|..... +-...++|.+..|++||+|+....+.+.|. .+.++|
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~R---em~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnl 80 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSER---EMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNL 80 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChH---HHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEE
Confidence 456789999999999999999999999998876543 223478999999999999999999998873 489999
Q ss_pred EcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcc
Q 008294 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKP 239 (571)
Q Consensus 160 iDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~ 239 (571)
||||||.||.-++.+++..+.++++||||+.|++.||......+...+..++-|+||+|++.++.+++.++|.+.+|.+.
T Consensus 81 IDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~ 160 (603)
T COG0481 81 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA 160 (603)
T ss_pred cCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888732
Q ss_pred eeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHH
Q 008294 240 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEE 319 (571)
Q Consensus 240 ~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~ 319 (571)
.
T Consensus 161 ~------------------------------------------------------------------------------- 161 (603)
T COG0481 161 S------------------------------------------------------------------------------- 161 (603)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEee
Q 008294 320 TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 399 (571)
Q Consensus 320 ~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 399 (571)
-.+.+||++|.||+++|+.|++.+|+|.. +++.|+.|++|+.+.
T Consensus 162 ----------------dav~~SAKtG~gI~~iLe~Iv~~iP~P~g--------------------~~~~pLkALifDS~y 205 (603)
T COG0481 162 ----------------DAVLVSAKTGIGIEDVLEAIVEKIPPPKG--------------------DPDAPLKALIFDSWY 205 (603)
T ss_pred ----------------hheeEecccCCCHHHHHHHHHhhCCCCCC--------------------CCCCcceEEEEeccc
Confidence 14567999999999999999999999975 368999999999999
Q ss_pred cCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE-eCCCC---ccccceecCCCC
Q 008294 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL-AGLKD---TITGETLCDADH 475 (571)
Q Consensus 400 d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i-~gl~~---~~~Gdtl~~~~~ 475 (571)
|+|.|.++++||+.|++++||+|....+|+...|..+-.+.- ...+++++.||+++-+ +|+++ ++.|||+....+
T Consensus 206 D~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~ 284 (603)
T COG0481 206 DNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASN 284 (603)
T ss_pred cccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCC
Confidence 999999999999999999999999999999988888877765 6688999999999877 56654 788999985555
Q ss_pred c--ccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCe-----EEEEEecHHHHHHHHHHHHh
Q 008294 476 P--ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQ-----TVIEGMGELHLEIIVDRLKR 548 (571)
Q Consensus 476 ~--~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge-----~il~g~GelhLev~~~rL~~ 548 (571)
| .+++.++..+|+++..+.|.+..|.+.|.+||.||..+|.+|.++. ||.+ +..+.+|-|||||+.+||+|
T Consensus 285 p~~e~LpGfk~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E~--EtS~ALGfGfRcGFLGlLHmeiiqERLeR 362 (603)
T COG0481 285 PATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYEP--ETSQALGFGFRCGFLGLLHMEIIQERLER 362 (603)
T ss_pred CccccCCCCCcCCceEEEeecccChhHHHHHHHHHHhcccccceeeecc--ccchhccCceeehhhhHHHHHHHHHHHHH
Confidence 4 4678888889999999999999999999999999999999999985 5654 34556899999999999999
Q ss_pred HhCceEEEecCeEEEEEEEec
Q 008294 549 EFKKLMLVHPKSTIVKAFLKS 569 (571)
Q Consensus 549 ~~~vev~~~~p~i~yke~~~~ 569 (571)
+|++++.++.|+|+|+-..++
T Consensus 363 Ef~ldlI~TaPsV~Y~v~~~~ 383 (603)
T COG0481 363 EFDLDLITTAPSVVYKVELTD 383 (603)
T ss_pred hhCcceEecCCceEEEEEEcC
Confidence 999999999999999998876
No 24
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=1e-51 Score=412.87 Aligned_cols=270 Identities=72% Similarity=1.153 Sum_probs=261.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
||+++||+|+|||||+++|++.+|.+.+.|.+..|++++|+.++|++||+|++.....+.|++++++|||||||.+|..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 69999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCCCCCC
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 251 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~ 251 (571)
+..+++.+|++|+|||+..|+..+++.+|+.+...++|+++|+||+|+.++++.++++++++.++..+.+.++|++...+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa~~~ 160 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGEEDD 160 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccccCCC
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred cceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhccc
Q 008294 252 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 331 (571)
Q Consensus 252 ~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~ 331 (571)
|+|+||++.+++|.|... .|..+...++|+++.+..+++|+.|+|.+++.||+|||+||+|++++.+++..++++++..
T Consensus 161 f~g~vd~~~~~a~~~~~~-~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~~~~ 239 (270)
T cd01886 161 FRGVVDLIEMKALYWDGE-LGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKGTIA 239 (270)
T ss_pred ceEEEEccccEEEecccC-CCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Confidence 999999999999999443 3667888999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeeccccCCCChHHHHHHHHHhCCCC
Q 008294 332 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362 (571)
Q Consensus 332 ~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p 362 (571)
+.++|||||||.++.|++.|||.|.+++|+|
T Consensus 240 ~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 240 NKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred CcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999998
No 25
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-51 Score=424.57 Aligned_cols=458 Identities=24% Similarity=0.331 Sum_probs=347.9
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-----cCeEEEE
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-----NKHRINI 159 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-----~~~~i~l 159 (571)
..+.++||++++||.++|||+|++.|..+++..-.. ..+....+.|....|++||+++.....++.. +.+.+|+
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~-~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni 201 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSK-NTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI 201 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccc-cccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence 355789999999999999999999998776632211 1122347889999999999999999888764 4678999
Q ss_pred EcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccch-----------hhhH
Q 008294 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANF-----------FRTR 228 (571)
Q Consensus 160 iDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~-----------~~~~ 228 (571)
+|||||.+|..++..+++.+|++++|||+.+|+.-+++.+++.+.+.++|+.+|+||+|+...++ ..++
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii 281 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHII 281 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875331 2234
Q ss_pred HHHHHHh---CCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHH---------HH----
Q 008294 229 DMIVTNL---GAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQE---------YR---- 292 (571)
Q Consensus 229 ~~i~~~l---~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---------~~---- 292 (571)
++++..+ +....++.-| ...+++|.+..+||.|++.+|+..|.+.... +|
T Consensus 282 ~~iN~~is~~s~~~~~~~sP--------------~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvY 347 (971)
T KOG0468|consen 282 DEINNLISTFSKDDNPVVSP--------------ILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVY 347 (971)
T ss_pred HHhcchhhhccccccccccc--------------ccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhcccc
Confidence 4444322 1211222222 2456889999999999999988776654211 11
Q ss_pred ------------------HHHHHHHhhcCHHHHHHHhc-------------CCCCCHHHHHHHHHhhcccCcceeee---
Q 008294 293 ------------------SQMIETIVELDDEAMESYLE-------------GNEPDEETIKKLIRKGTIAGSFVPVL--- 338 (571)
Q Consensus 293 ------------------~~l~e~~~~~~~~l~e~~l~-------------~~~~~~~~l~~~l~~~~~~~~~~Pv~--- 338 (571)
..++|.+.+.-..+.++-+. |..+++++++ .+.-|.+
T Consensus 348 f~~ktrkF~kk~~~~~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k---------~n~rPll~lv 418 (971)
T KOG0468|consen 348 FHSKTRKFVKKPPDGSGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYK---------LNPRPLLRLV 418 (971)
T ss_pred ccccccccccCCCCCcccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhh---------cCccHHHHHH
Confidence 01222222222222222221 1223333332 1122221
Q ss_pred eccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCccccccccCCCCCCeEEEEEEEee-cCCCceEEEEEEe
Q 008294 339 CGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMS-DPFVGSLTFVRVY 412 (571)
Q Consensus 339 ~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~-d~~~G~i~~~rV~ 412 (571)
|-|-+.- -..+.|++++++|+|.+....+.. ..++.....+.+|++++|+++.+.|++. +..+-..+|+||+
T Consensus 419 c~~ffg~--~sgfvd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~ 496 (971)
T KOG0468|consen 419 CKSFFGI--ESGFVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVY 496 (971)
T ss_pred HHHhccc--hhhhhHhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeee
Confidence 1111111 135899999999999985544422 1223445677889999999999999995 4445678999999
Q ss_pred cceeCCCCEEEeCCCC---------ceeecceEEEeccCceeecCeecCCCEEEEeCCCC-ccccceecCC---CCcccc
Q 008294 413 AGTLSAGSYVLNANKG---------KKERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLCDA---DHPILL 479 (571)
Q Consensus 413 sG~l~~gd~v~~~~~~---------~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~-~~~Gdtl~~~---~~~~~l 479 (571)
||+++.|+.|.+...+ ....|++++...++++.+|++|+||.++.|.|+++ +.+..|++.. ++...+
T Consensus 497 Sg~~~~~q~V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiF 576 (971)
T KOG0468|consen 497 SGQVVTGQDVRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIF 576 (971)
T ss_pred ecceeecceeeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeec
Confidence 9999999999865433 23568899999999999999999999999999987 5567788764 445677
Q ss_pred cCCCC-CCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHh-CceEEEe
Q 008294 480 ERMDF-PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KKLMLVH 557 (571)
Q Consensus 480 ~~~~~-~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~-~vev~~~ 557 (571)
+|+.+ +.|+++++++|.++++++||.+||+|.++.+|.+..++ +|+||++|.|.|||+|||++++||..| .+|++++
T Consensus 577 rpl~~~t~~VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkV-EESGEHvilGtGElYmDcvlyDLR~~yseieikva 655 (971)
T KOG0468|consen 577 RPLKFNTEPVVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKV-EESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVA 655 (971)
T ss_pred cchhcCCcceEEEEeccCChhhhhHHHHHHHhhcccCCcEEEeh-hhcCceEEecCchhhHHHHHHHHHHHHhhhceeec
Confidence 88875 69999999999999999999999999999999998888 789999999999999999999999999 4999999
Q ss_pred cCeEEEEEEEec
Q 008294 558 PKSTIVKAFLKS 569 (571)
Q Consensus 558 ~p~i~yke~~~~ 569 (571)
.|-+.|.|++-+
T Consensus 656 DPvv~F~Et~ve 667 (971)
T KOG0468|consen 656 DPVVRFCETVVE 667 (971)
T ss_pred CceeEEEEeeec
Confidence 999999999854
No 26
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-49 Score=419.27 Aligned_cols=467 Identities=27% Similarity=0.366 Sum_probs=343.2
Q ss_pred cCCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcce--eeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEc
Q 008294 84 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIID 161 (571)
Q Consensus 84 ~~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~--~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liD 161 (571)
+.+...+|||+++.|++||||||++.|+...|.+.. .|++ +++|+.++|+.||+|+..+.+++..+++.+||||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagki----rfld~redeq~rgitmkss~is~~~~~~~~nlid 78 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKI----RFLDTREDEQTRGITMKSSAISLLHKDYLINLID 78 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccce----eeccccchhhhhceeeeccccccccCceEEEEec
Confidence 346678999999999999999999999988886554 2333 8899999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccc-----------hhhhHHH
Q 008294 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN-----------FFRTRDM 230 (571)
Q Consensus 162 TPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~-----------~~~~~~~ 230 (571)
+|||.||.+++..+.+.+|+++++||+.+|+..||..+++++-..+...++|+||||+...+ .-+++++
T Consensus 79 spghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~ 158 (887)
T KOG0467|consen 79 SPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQ 158 (887)
T ss_pred CCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999976433 2344555
Q ss_pred HHHHhCCcceeeeccCCCCCCcc--eeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhh-------
Q 008294 231 IVTNLGAKPLVVQLPVGAEDNFK--GVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE------- 301 (571)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~--~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~------- 301 (571)
++..+|.-..-+-.--....... ++..--...++.|.+...||.|....+..-+..+.....+.+.-.+|.
T Consensus 159 vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~k 238 (887)
T KOG0467|consen 159 VNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDPK 238 (887)
T ss_pred hhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhccceeecch
Confidence 55444421100000000000000 011111234566777778999888877765555433333333322221
Q ss_pred -----------------------------------cCHHHHHHHhc--CCCCCHHHHHHHHHhhcccCcceeeeeccccC
Q 008294 302 -----------------------------------LDDEAMESYLE--GNEPDEETIKKLIRKGTIAGSFVPVLCGSAFK 344 (571)
Q Consensus 302 -----------------------------------~~~~l~e~~l~--~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~ 344 (571)
.|-+.+++... +..+-..++...+.. ....|+|+ |
T Consensus 239 tk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~~--im~~wLPl---s--- 310 (887)
T KOG0467|consen 239 TKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLDA--IMSTWLPL---S--- 310 (887)
T ss_pred hhhhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHHH--HHHhhccc---c---
Confidence 11222222211 112222222221111 12456665 1
Q ss_pred CCChHHHHHHHHHhCCCCCCCCCCCCCC--------CCCccccccccCCCCCCeEEEEEEEeec-----CCCceEEEEEE
Q 008294 345 NKGVQPLLDAVVDYLPSPLDLPAMKGTD--------PENPEATLERAASDDEPFAGLAFKIMSD-----PFVGSLTFVRV 411 (571)
Q Consensus 345 ~~Gv~~Lld~i~~~lP~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~p~~~~V~k~~~d-----~~~G~i~~~rV 411 (571)
+..+-+.+.++|+|.+.+..++.. .+.+.......|++++|..++|.|+... |....++++||
T Consensus 311 ----~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari 386 (887)
T KOG0467|consen 311 ----DAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARI 386 (887)
T ss_pred ----cchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheeeeee
Confidence 345556668889988765544321 1112334556789999999999999843 33225799999
Q ss_pred ecceeCCCCEEEeCCC-------CceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCCC
Q 008294 412 YAGTLSAGSYVLNANK-------GKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDF 484 (571)
Q Consensus 412 ~sG~l~~gd~v~~~~~-------~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~ 484 (571)
||||++.||.|+..+. -...+|.++|.++|++..+.+++++|++++|.|-+-+....|||+.....++....|
T Consensus 387 ~sgTlr~g~~v~v~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~~~f 466 (887)
T KOG0467|consen 387 FSGTLRVGQVVYVLGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLVVNF 466 (887)
T ss_pred ccCceeeccEeeecCCCCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceecccCCCcceeeeee
Confidence 9999999999996543 234679999999999999999999999999999333667889998754444444333
Q ss_pred -CCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHh-CceEEEecCeEE
Q 008294 485 -PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KKLMLVHPKSTI 562 (571)
Q Consensus 485 -~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~-~vev~~~~p~i~ 562 (571)
-+|.++++|+|.++.|+++|.++|+.|.+.||++++.. +++|||++...||+|||.|+.+|++ | ++++++++|.+.
T Consensus 467 ~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v-~~~gEhvl~~aGevhlerc~kDL~e-fa~i~i~vSeP~vp 544 (887)
T KOG0467|consen 467 QITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRV-EENGEHVLVTAGEVHLERCLKDLKE-FAKIEISVSEPLVP 544 (887)
T ss_pred eeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHH-hhccceeeeeccHHHHHHHHHHHhh-hhceEEEecCCccc
Confidence 49999999999999999999999999999999999988 4799999999999999999999999 7 799999999999
Q ss_pred EEEEEe
Q 008294 563 VKAFLK 568 (571)
Q Consensus 563 yke~~~ 568 (571)
||||+.
T Consensus 545 frET~~ 550 (887)
T KOG0467|consen 545 FRETII 550 (887)
T ss_pred hhhhcc
Confidence 999983
No 27
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=1.6e-47 Score=382.42 Aligned_cols=263 Identities=36% Similarity=0.547 Sum_probs=243.6
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee----cCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH----EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~----~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
++|||+++||+|+|||||+++|++.+|.+.+.|.+. .|++++|+.+.|++||+++......+.|++++++||||||
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG 80 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPG 80 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCC
Confidence 369999999999999999999999999999988887 5888999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
|.+|..++..+++.+|++|+|+|+..++..++..+|+.+...++|+++|+||+|+..+++.++++++++.++...+|+++
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~ 160 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDCTPLTW 160 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCceeEEe
Confidence 99999999999999999999999999999999999999988999999999999999998888999999999999999999
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
|++.+.+|+|++|++.+++|.|.....+......++|+++. |.+++.||++||+|+++++++.+++...
T Consensus 161 Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~-----------e~~~e~~~~l~e~~~e~~~~~~~~~~~~ 229 (267)
T cd04169 161 PIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDD-----------PKLDELGGDLAEQLREELELLEGAGPEF 229 (267)
T ss_pred cccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccH-----------HHHHhcCHHHHHHHhCCCccchhhhHHH
Confidence 99999999999999999999994322222345555666543 7889999999999999999999999999
Q ss_pred HHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCC
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p 362 (571)
+++++..+.++|||||||.+|.|++.|||+|.+++|+|
T Consensus 230 ~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 230 DQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred hHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999998
No 28
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=100.00 E-value=1.8e-45 Score=370.10 Aligned_cols=268 Identities=44% Similarity=0.715 Sum_probs=256.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
||+++||+|+|||||+++|++..|.+.+.|++..|++.+|+.+.|.++++|+......+.|+++.+++|||||+.+|..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 68999999999999999999999988888999899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCCCCCC
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 251 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~ 251 (571)
+..+++.+|++++|+|+..+...++..+|+.+...++|.++|+||+|+..+++.+.++++++.++..+++.++|++.+.+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~~~~ 160 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGEGDD 160 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccCCCc
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred cceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhccc
Q 008294 252 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 331 (571)
Q Consensus 252 ~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~ 331 (571)
|.+++|++.++++.|.. |..+...++|+++.+..+++|+.|+|.+++.||++||+||+|++++.+++...+++++..
T Consensus 161 ~~~~vd~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~~ 237 (268)
T cd04170 161 FKGVVDLLTEKAYIYSP---GAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLRRALRA 237 (268)
T ss_pred eeEEEEcccCEEEEccC---CCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999964 333566789999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeeccccCCCChHHHHHHHHHhCCCC
Q 008294 332 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362 (571)
Q Consensus 332 ~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p 362 (571)
+.++||||+||+++.|++.|+|+|.+++|+|
T Consensus 238 ~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 238 GLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred CCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999998
No 29
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=1.3e-44 Score=355.63 Aligned_cols=237 Identities=41% Similarity=0.653 Sum_probs=222.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
||+++||+|+|||||+++|++.+|.+.+.|++..|++++|+.+.|+++|+|+......+.|+++++++||||||.+|..+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCCCCCC
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 251 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~ 251 (571)
+..+++.+|++++|+|+.+|+..+++.+|+.+...++|+++|+||+|+..+++.+++++|++.|+.+++|+++|+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~----- 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG----- 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred cceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhccc
Q 008294 252 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 331 (571)
Q Consensus 252 ~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~ 331 (571)
+++.+ . .. ..++++|+|.++|.||++||+||+|++++.+||..++++++..
T Consensus 156 ---~~~~~-------~--------~~-----------~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~ 206 (237)
T cd04168 156 ---LAPNI-------C--------ET-----------NEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAK 206 (237)
T ss_pred ---Eeeee-------e--------ee-----------eeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 11110 0 01 1235789999999999999999999999999999999999999
Q ss_pred CcceeeeeccccCCCChHHHHHHHHHhCCCC
Q 008294 332 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362 (571)
Q Consensus 332 ~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p 362 (571)
+.++|||||||.++.|++.|||.|++++|+|
T Consensus 207 ~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 207 RKVFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred CCeEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999998
No 30
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=4.7e-37 Score=328.50 Aligned_cols=274 Identities=26% Similarity=0.348 Sum_probs=218.1
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
..+..+||+++||+|+|||||+++|++..+.+.. ....+...+|+.++|+++|+|++.....+.+++.+++|||||||
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~--~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGG--SAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhcc--ccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH
Confidence 3466899999999999999999999987775432 22234467899999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccc--hhhhHHHHHHHhCCcceee
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN--FFRTRDMIVTNLGAKPLVV 242 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~~~~ 242 (571)
.+|..++..++..+|++++|||+.+|+..|+++++..+...++| +++++||+|+...+ ++.+.+++++.+
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l------- 227 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELL------- 227 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHH-------
Confidence 99999999999999999999999999999999999999999999 56789999986521 111122222222
Q ss_pred eccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHH
Q 008294 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (571)
Q Consensus 243 ~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~ 322 (571)
T Consensus 228 -------------------------------------------------------------------------------- 227 (478)
T PLN03126 228 -------------------------------------------------------------------------------- 227 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcccCcceeeeeccccCCC------------------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccC
Q 008294 323 KLIRKGTIAGSFVPVLCGSAFKNK------------------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAA 384 (571)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~~~~------------------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~ 384 (571)
+........+|++.+||++|. ++..|++.|.++.|.|..
T Consensus 228 ---~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r-------------------- 284 (478)
T PLN03126 228 ---SSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQR-------------------- 284 (478)
T ss_pred ---HhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCC--------------------
Confidence 111111123456666666552 256799999988776643
Q ss_pred CCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCC--ceeecceEEEeccCceeecCeecCCCEEEE--eC
Q 008294 385 SDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIAL--AG 460 (571)
Q Consensus 385 ~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~g 460 (571)
+.+.||.++|..+|.++++|.+..|+|.+|++++||.|+..+.+ ...+|++|.... .++++|.|||.++| .+
T Consensus 285 ~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~----~~v~~A~aG~~v~l~L~~ 360 (478)
T PLN03126 285 QTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQ----KILDEALAGDNVGLLLRG 360 (478)
T ss_pred ccccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECC----eECCEEeCCceeeeeccC
Confidence 13689999999999999999999999999999999999987654 456788887553 78999999999998 56
Q ss_pred CCC--ccccceecCCCC
Q 008294 461 LKD--TITGETLCDADH 475 (571)
Q Consensus 461 l~~--~~~Gdtl~~~~~ 475 (571)
++. +..|++||+++.
T Consensus 361 i~~~di~rG~VL~~~~~ 377 (478)
T PLN03126 361 IQKADIQRGMVLAKPGS 377 (478)
T ss_pred CcHHHcCCccEEecCCC
Confidence 643 889999998753
No 31
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=4.3e-37 Score=326.21 Aligned_cols=275 Identities=27% Similarity=0.398 Sum_probs=220.1
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.+..+||+++||+|+|||||+++|++..|.+.. ........+|+.++|+++|+|++.....+.+++.+++|+|||||.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~--~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGG--AKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCcccc--ccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 456799999999999999999999977665431 111223578999999999999999999998999999999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
+|...+.+++..+|++++|||+.+|+..|+++++..+...++| +++|+||+|+...+ +..+.+.
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~--~~~~~~~------------- 151 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE--ELLELVE------------- 151 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHH--HHHHHHH-------------
Confidence 9999999999999999999999999999999999999999999 56789999986532 1111111
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
+++...+
T Consensus 152 -------------------------------------------------------------------------~~l~~~l 158 (409)
T CHL00071 152 -------------------------------------------------------------------------LEVRELL 158 (409)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 1222222
Q ss_pred HhhcccCcceeeeeccccCCC------------------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCC
Q 008294 326 RKGTIAGSFVPVLCGSAFKNK------------------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDD 387 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~------------------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (571)
+........+|++++||++|. |+..|+++|.+++|.|.. +.+
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~--------------------~~~ 218 (409)
T CHL00071 159 SKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPER--------------------DTD 218 (409)
T ss_pred HHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCC--------------------CCC
Confidence 222222234688888888875 467899999999887753 136
Q ss_pred CCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCC--CCceeecceEEEeccCceeecCeecCCCEEEE--eCCC-
Q 008294 388 EPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 462 (571)
Q Consensus 388 ~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~--~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~- 462 (571)
.||+++|++++.++++|.+++|||++|+++.||.|...+ .+...+|++|.... +++++|.|||+|++ .+++
T Consensus 219 ~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~----~~v~~a~aGd~v~i~l~~i~~ 294 (409)
T CHL00071 219 KPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQ----KTLDEGLAGDNVGILLRGIQK 294 (409)
T ss_pred CCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcC----cCCCEECCCceeEEEEcCCCH
Confidence 899999999999999999999999999999999998643 34567888887543 67999999999977 4665
Q ss_pred -CccccceecCCCC
Q 008294 463 -DTITGETLCDADH 475 (571)
Q Consensus 463 -~~~~Gdtl~~~~~ 475 (571)
++..||+||+++.
T Consensus 295 ~~i~~G~vl~~~~~ 308 (409)
T CHL00071 295 EDIERGMVLAKPGT 308 (409)
T ss_pred HHcCCeEEEecCCC
Confidence 4889999998753
No 32
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=5.6e-37 Score=323.85 Aligned_cols=274 Identities=27% Similarity=0.402 Sum_probs=218.7
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeee-ecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV-HEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~-~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
.+..+||+++||+|+|||||+++|+...+. .|.. ..+...+|..++|+++|+|++.....+.+++.+++|||||||
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh 85 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAE---RGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH 85 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhh---hccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH
Confidence 455799999999999999999999843321 1211 112236899999999999999998888888899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
.+|...+..++..+|++++|||+.+|+..++++++..+...++|. ++|+||+|+...+ +..+.+.
T Consensus 86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~--~~~~~i~------------ 151 (394)
T PRK12736 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDE--ELLELVE------------ 151 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchH--HHHHHHH------------
Confidence 999999999999999999999999999999999999999999995 6789999986321 1111111
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
+++...
T Consensus 152 --------------------------------------------------------------------------~~i~~~ 157 (394)
T PRK12736 152 --------------------------------------------------------------------------MEVREL 157 (394)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 111112
Q ss_pred HHhhcccCcceeeeeccccCCC--------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEE
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNK--------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~--------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 396 (571)
+.........+|++++||++|. ++..|++.|.+++|.|.. +.++||+++|++
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~--------------------~~~~p~r~~I~~ 217 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPER--------------------DTDKPFLMPVED 217 (394)
T ss_pred HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEE
Confidence 2211112234689999999983 689999999999997743 136899999999
Q ss_pred EeecCCCceEEEEEEecceeCCCCEEEeCCC--CceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Ccccccee
Q 008294 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETL 470 (571)
Q Consensus 397 ~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl 470 (571)
++.++++|.++.|||.+|+|+.||.|+..+. +...+|++|... ..++++|.|||++++ .|++ ++..|++|
T Consensus 218 ~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl 293 (394)
T PRK12736 218 VFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRDEVERGQVL 293 (394)
T ss_pred EEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEEC----CEEccEECCCCEEEEEECCCcHHhCCcceEE
Confidence 9999999999999999999999999998665 556788888753 378999999999977 7774 48899999
Q ss_pred cCCCC
Q 008294 471 CDADH 475 (571)
Q Consensus 471 ~~~~~ 475 (571)
|+++.
T Consensus 294 ~~~~~ 298 (394)
T PRK12736 294 AKPGS 298 (394)
T ss_pred ecCCC
Confidence 98753
No 33
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=9.6e-37 Score=340.21 Aligned_cols=305 Identities=26% Similarity=0.330 Sum_probs=245.1
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
..+.++|+|+||+|||||||+++|... .+.. ...+|+|.......+.|+++.++|||||||.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~--------~v~~----------~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe 348 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKT--------NVAA----------GEAGGITQHIGAYQVETNGGKITFLDTPGHE 348 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhC--------Cccc----------cccCceeeeccEEEEEECCEEEEEEECCCCc
Confidence 357799999999999999999999621 1111 1136789888888899999999999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccC
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (571)
+|...+.++++.+|++|+|||+.+|+..++.++|..+...++|+++|+||+|+..++..++..++.+ .+.
T Consensus 349 ~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~-~~~--------- 418 (787)
T PRK05306 349 AFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSE-YGL--------- 418 (787)
T ss_pred cchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHH-hcc---------
Confidence 9999999999999999999999999999999999999999999999999999977655444444432 000
Q ss_pred CCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHH
Q 008294 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (571)
Q Consensus 247 ~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~ 326 (571)
+.+.
T Consensus 419 -----------------------------------------------------------~~e~----------------- 422 (787)
T PRK05306 419 -----------------------------------------------------------VPEE----------------- 422 (787)
T ss_pred -----------------------------------------------------------cHHH-----------------
Confidence 0000
Q ss_pred hhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceE
Q 008294 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406 (571)
Q Consensus 327 ~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i 406 (571)
.+..+|++++||++|.|+++|+++|...... ....++++.|+.++|++++.|+++|.+
T Consensus 423 ----~g~~vp~vpvSAktG~GI~eLle~I~~~~e~------------------~~l~~~~~~~~~g~V~es~~dkg~G~v 480 (787)
T PRK05306 423 ----WGGDTIFVPVSAKTGEGIDELLEAILLQAEV------------------LELKANPDRPARGTVIEAKLDKGRGPV 480 (787)
T ss_pred ----hCCCceEEEEeCCCCCCchHHHHhhhhhhhh------------------hhcccCCCCCcEEEEEEEEEcCCCeEE
Confidence 0223689999999999999999999753210 012245688999999999999999999
Q ss_pred EEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCc-cccceecCCCCc---------
Q 008294 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP--------- 476 (571)
Q Consensus 407 ~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~Gdtl~~~~~~--------- 476 (571)
++++|++|+|+.||.|++.+ +.++++.|.+....++++|.|||+|.|.||+++ .+||+|+...+.
T Consensus 481 ~~v~V~sGtLk~Gd~vv~g~-----~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~ 555 (787)
T PRK05306 481 ATVLVQNGTLKVGDIVVAGT-----TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEY 555 (787)
T ss_pred EEEEEecCeEecCCEEEECC-----cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHH
Confidence 99999999999999999853 467888888877789999999999999999998 899999843221
Q ss_pred ---------------ccccCCCCC-----CceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEE
Q 008294 477 ---------------ILLERMDFP-----DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSR 522 (571)
Q Consensus 477 ---------------~~l~~~~~~-----~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~ 522 (571)
..+..+..+ ...+.+.|++..+++.+.|..+|.+|..+++.+.+-.
T Consensus 556 r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~~ 621 (787)
T PRK05306 556 RQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNIIH 621 (787)
T ss_pred HHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEEe
Confidence 122222111 1268999999999999999999999999999988754
No 34
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=2.1e-36 Score=322.44 Aligned_cols=271 Identities=26% Similarity=0.317 Sum_probs=219.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceee--ee-----------ecCcccccchhhhhhhceeEeeceEEEeecC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG--EV-----------HEGTATMDWMEQEQERGITITSAATTTYWNK 154 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g--~~-----------~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 154 (571)
+...||+++||+|+|||||+.+|++.+|.+.+.+ .+ ...++++|..++|+++|+|++.....+.+++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4578999999999999999999999998765532 11 1124679999999999999999999999999
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcCCCe-EEEEecCCccc-----
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVPR-ICFVNKMDRLG----- 221 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p~-ivviNK~D~~~----- 221 (571)
+.++|||||||.+|..++..+++.+|++|+|||+.+|. ..|++++|..+...++|. ++++||||+..
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~ 164 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhH
Confidence 99999999999999999999999999999999999873 379999999999999975 67899999862
Q ss_pred cchhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhh
Q 008294 222 ANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (571)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 301 (571)
.++.+++++++..++
T Consensus 165 ~~~~~i~~ei~~~l~----------------------------------------------------------------- 179 (447)
T PLN00043 165 ARYDEIVKEVSSYLK----------------------------------------------------------------- 179 (447)
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 223333333333221
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCC
Q 008294 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMK 369 (571)
Q Consensus 302 ~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~------------~Lld~i~~~lP~p~~~~~~~ 369 (571)
+......-+|++.+||++|.|+. .|++.|.+ ++.|..
T Consensus 180 -------------------------~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~~----- 228 (447)
T PLN00043 180 -------------------------KVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKR----- 228 (447)
T ss_pred -------------------------HcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCcc-----
Confidence 10000112477888999999874 48888865 444432
Q ss_pred CCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCe
Q 008294 370 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 449 (571)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~ 449 (571)
..+.||++.|..++..+++|++..|||.+|++++||.|...+.+...+|++|... ..++++
T Consensus 229 ---------------~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~----~~~v~~ 289 (447)
T PLN00043 229 ---------------PSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMH----HESLQE 289 (447)
T ss_pred ---------------ccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEEC----CeEeCE
Confidence 1368999999999999999999999999999999999999998888889998754 388999
Q ss_pred ecCCCEEEE--eCC--CCccccceecCC
Q 008294 450 ALAGDIIAL--AGL--KDTITGETLCDA 473 (571)
Q Consensus 450 a~aGdiv~i--~gl--~~~~~Gdtl~~~ 473 (571)
|.|||.+++ .++ +++.+|++||+.
T Consensus 290 a~aGd~v~i~l~~~~~~~i~rG~vl~~~ 317 (447)
T PLN00043 290 ALPGDNVGFNVKNVAVKDLKRGYVASNS 317 (447)
T ss_pred ecCCCeEEEEECCCCHhhCCCccEEccC
Confidence 999999988 455 347899999986
No 35
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=3.8e-36 Score=320.76 Aligned_cols=272 Identities=27% Similarity=0.319 Sum_probs=221.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceee---------eeecCc----ccccchhhhhhhceeEeeceEEEeecC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG---------EVHEGT----ATMDWMEQEQERGITITSAATTTYWNK 154 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g---------~~~~g~----~~~d~~~~e~~~g~t~~~~~~~~~~~~ 154 (571)
+...||+++||+|+|||||+++|++.+|.+...+ ....|+ +.+|..++|+++|+|++.....+.+++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 4568999999999999999999999988766533 112222 469999999999999999999999999
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcCCCe-EEEEecCCcccc----
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVPR-ICFVNKMDRLGA---- 222 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~---- 222 (571)
+.++|||||||.+|..++..++..+|++++|||+.+|+ ..||+++|..+...++|. |+++||||+...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~ 164 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQ 164 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhH
Confidence 99999999999999999999999999999999999997 589999999999999996 579999996432
Q ss_pred -chhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhh
Q 008294 223 -NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (571)
Q Consensus 223 -~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 301 (571)
+++++.+++++.|+.
T Consensus 165 ~~~~~i~~~i~~~l~~---------------------------------------------------------------- 180 (446)
T PTZ00141 165 ERYDEIKKEVSAYLKK---------------------------------------------------------------- 180 (446)
T ss_pred HHHHHHHHHHHHHHHh----------------------------------------------------------------
Confidence 233444444433221
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCC
Q 008294 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMK 369 (571)
Q Consensus 302 ~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~------------~Lld~i~~~lP~p~~~~~~~ 369 (571)
.......+|++.+||++|.|+. .|++.|.+. +.|..
T Consensus 181 --------------------------~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~-~~~~~----- 228 (446)
T PTZ00141 181 --------------------------VGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL-EPPKR----- 228 (446)
T ss_pred --------------------------cCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC-CCCCc-----
Confidence 0001112688899999999985 488888654 43422
Q ss_pred CCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCe
Q 008294 370 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 449 (571)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~ 449 (571)
+.+.|+.+.|..++..+++|++..|||.+|+|+.||.|...+.+...+|++|.... .++++
T Consensus 229 ---------------~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~----~~~~~ 289 (446)
T PTZ00141 229 ---------------PVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHH----EQLAE 289 (446)
T ss_pred ---------------CCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecC----cccCE
Confidence 13689999999999999999999999999999999999999988888899887543 78999
Q ss_pred ecCCCEEEE--eCCC--CccccceecCCC
Q 008294 450 ALAGDIIAL--AGLK--DTITGETLCDAD 474 (571)
Q Consensus 450 a~aGdiv~i--~gl~--~~~~Gdtl~~~~ 474 (571)
|.|||.+++ .+++ ++.+|++||+..
T Consensus 290 a~aG~~v~i~L~~i~~~~v~rG~vl~~~~ 318 (446)
T PTZ00141 290 AVPGDNVGFNVKNVSVKDIKRGYVASDSK 318 (446)
T ss_pred ECCCCEEEEEECCCCHHHcCCceEEecCC
Confidence 999999998 3443 378999999864
No 36
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=5.6e-36 Score=316.67 Aligned_cols=273 Identities=28% Similarity=0.409 Sum_probs=216.4
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee-cCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~-~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
.++.+||+++||+|+|||||+++|++... ..|... .+...+|..++|+++|+|++.....+.+++.+++|||||||
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh 85 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLA---KEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHH---HhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch
Confidence 45689999999999999999999974322 122211 12346899999999999999999888888899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
.+|...+..++..+|++++|||+.+|+..++++++..+...++|.+ +|+||+|+...+ +..+.+.
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~--~~~~~~~------------ 151 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVE------------ 151 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHH--HHHHHHH------------
Confidence 9999999999999999999999999999999999999999999987 579999986421 1111111
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
+++...
T Consensus 152 --------------------------------------------------------------------------~~i~~~ 157 (394)
T TIGR00485 152 --------------------------------------------------------------------------MEVREL 157 (394)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 011111
Q ss_pred HHhhcccCcceeeeeccccCCC--------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEE
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNK--------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~--------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 396 (571)
++........+|++++||++|. ++.+|++.|.+++|.|.. +.++||.++|++
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~--------------------~~~~p~r~~V~~ 217 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPER--------------------ETDKPFLMPIED 217 (394)
T ss_pred HHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCC--------------------CCCCCeEEEEEE
Confidence 1111111233689999999874 467899999988887753 136899999999
Q ss_pred EeecCCCceEEEEEEecceeCCCCEEEeCC--CCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Ccccccee
Q 008294 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETL 470 (571)
Q Consensus 397 ~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~--~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl 470 (571)
++.++++|.++.|||.+|+|++||.|+..+ .+...+|++|... ..++++|.|||++++ .|++ ++..|++|
T Consensus 218 vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl 293 (394)
T TIGR00485 218 VFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVL 293 (394)
T ss_pred EEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEE
Confidence 999999999999999999999999999765 3566788888754 378999999999977 6664 48899999
Q ss_pred cCCC
Q 008294 471 CDAD 474 (571)
Q Consensus 471 ~~~~ 474 (571)
|+++
T Consensus 294 ~~~~ 297 (394)
T TIGR00485 294 AKPG 297 (394)
T ss_pred ecCC
Confidence 9874
No 37
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=2.2e-35 Score=311.86 Aligned_cols=274 Identities=27% Similarity=0.388 Sum_probs=216.6
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee-cCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~-~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
.+...||+++||+|+|||||+++|++..+. .|... ...+.+|..++|+++|+|++.....+.+++.+++|||||||
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAK---KGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH 85 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhh---cCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH
Confidence 345789999999999999999999864321 11111 12246899999999999999998888888999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
.+|...+..++..+|++++|+|+.+|+..++++++..+...++|.+ +|+||+|+...+ +..+.+.+
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~--~~~~~~~~----------- 152 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVEM----------- 152 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchH--HHHHHHHH-----------
Confidence 9999999999999999999999999999999999999999999977 579999986421 11111110
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
++...
T Consensus 153 ---------------------------------------------------------------------------ei~~~ 157 (396)
T PRK12735 153 ---------------------------------------------------------------------------EVREL 157 (396)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 11111
Q ss_pred HHhhcccCcceeeeeccccCC----------CChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEE
Q 008294 325 IRKGTIAGSFVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLA 394 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~----------~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 394 (571)
+......+..+|++++||++| .|+..|+++|.+.+|.|.. +.++||+++|
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~--------------------~~~~p~r~~I 217 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPER--------------------AIDKPFLMPI 217 (396)
T ss_pred HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCc--------------------cCCCCeEEEE
Confidence 111111112367888899988 4788999999999987743 1368999999
Q ss_pred EEEeecCCCceEEEEEEecceeCCCCEEEeCCC--CceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Cccccc
Q 008294 395 FKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGE 468 (571)
Q Consensus 395 ~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gd 468 (571)
..+|..+++|.++.|||.+|++++||.|+..+. ++..+|++|... .+++++|.|||.+++ .|++ ++..|+
T Consensus 218 ~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~ 293 (396)
T PRK12735 218 EDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGTKREDVERGQ 293 (396)
T ss_pred EEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEEC----CeEeCEECCCCEEEEEeCCCcHHHCCcce
Confidence 999999999999999999999999999997764 456678888753 378999999999998 6664 488999
Q ss_pred eecCCCC
Q 008294 469 TLCDADH 475 (571)
Q Consensus 469 tl~~~~~ 475 (571)
+||+++.
T Consensus 294 vl~~~~~ 300 (396)
T PRK12735 294 VLAKPGS 300 (396)
T ss_pred EEEcCCC
Confidence 9998753
No 38
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=5e-35 Score=311.53 Aligned_cols=275 Identities=27% Similarity=0.406 Sum_probs=214.1
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCc-ccccchhhhhhhceeEeeceEEEeecCeEEEEEcCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~-~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTP 163 (571)
...+...||+++||+|+|||||+++|... ....|...... ..+|..++|+++|+|++.....+++++.+++|+|||
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~---~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtP 132 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKV---LAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCP 132 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhH---HHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECC
Confidence 34567899999999999999999999622 11222221112 258999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccccchhhhHHHHHHHhCCcceee
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 242 (571)
||.+|...+..++..+|++++|||+.+|+..|+++++..+...++|. ++++||+|+...+ +..+.+.+
T Consensus 133 Gh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~--~~~~~i~~--------- 201 (447)
T PLN03127 133 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDE--ELLELVEM--------- 201 (447)
T ss_pred CccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHH--HHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999996 6789999986421 11111110
Q ss_pred eccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHH
Q 008294 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (571)
Q Consensus 243 ~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~ 322 (571)
++.
T Consensus 202 -----------------------------------------------------------------------------~i~ 204 (447)
T PLN03127 202 -----------------------------------------------------------------------------ELR 204 (447)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 011
Q ss_pred HHHHhhcccCcceeeeecccc---CCCC-------hHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEE
Q 008294 323 KLIRKGTIAGSFVPVLCGSAF---KNKG-------VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAG 392 (571)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~---~~~G-------v~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 392 (571)
+.+.........+|++.+||+ +|.| +..|++.|.+++|.|.. +.++||++
T Consensus 205 ~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r--------------------~~~~pfr~ 264 (447)
T PLN03127 205 ELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVR--------------------VLDKPFLM 264 (447)
T ss_pred HHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCc--------------------ccccceEe
Confidence 111110011223577777765 4444 78999999999997743 13689999
Q ss_pred EEEEEeecCCCceEEEEEEecceeCCCCEEEeCCC----CceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Cc
Q 008294 393 LAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK----GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DT 464 (571)
Q Consensus 393 ~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~----~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~ 464 (571)
.|..+|..+++|.+..|+|.+|++++||.|+..+. +...+|++|.... .++++|.|||.+++ .|++ ++
T Consensus 265 ~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~----~~v~~a~aGd~v~l~L~~i~~~~i 340 (447)
T PLN03127 265 PIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFK----KILDQGQAGDNVGLLLRGLKREDV 340 (447)
T ss_pred eEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEEC----cEeCEEcCCCEEEEEeCCCCHHHC
Confidence 99999999999999999999999999999987643 3467888887553 67999999999998 6664 48
Q ss_pred cccceecCCC
Q 008294 465 ITGETLCDAD 474 (571)
Q Consensus 465 ~~Gdtl~~~~ 474 (571)
..|++||+++
T Consensus 341 ~rG~Vl~~~~ 350 (447)
T PLN03127 341 QRGQVICKPG 350 (447)
T ss_pred CCccEEecCC
Confidence 8999999874
No 39
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=1.9e-35 Score=316.21 Aligned_cols=274 Identities=27% Similarity=0.358 Sum_probs=221.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCccee------------eee-ecCcccccchhhhhhhceeEeeceEEEeecC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTYWNK 154 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~------------g~~-~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 154 (571)
+...||+++||+|+|||||+++|++..|.+... |.. ..+++++|..++|+++|+|++.....+.+++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 457899999999999999999999998876543 322 2345689999999999999999999999999
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCC--CCchhHHHHHHHHHhcCCC-eEEEEecCCccccch---hhhH
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA--GVEPQSETVWRQADKYGVP-RICFVNKMDRLGANF---FRTR 228 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~--g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~---~~~~ 228 (571)
+.++|||||||.+|...+..+++.+|++++|||+.+ ++..++.+++..+...++| +++|+||+|+...+. ....
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999888875 788999999865321 1122
Q ss_pred HHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q 008294 229 DMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAME 308 (571)
Q Consensus 229 ~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e 308 (571)
+++++.+
T Consensus 164 ~~i~~~l------------------------------------------------------------------------- 170 (425)
T PRK12317 164 EEVSKLL------------------------------------------------------------------------- 170 (425)
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 2222111
Q ss_pred HHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCc
Q 008294 309 SYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENP 376 (571)
Q Consensus 309 ~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~ 376 (571)
.........+|++.+||++|.|+++ |+++|.. +|.|..
T Consensus 171 -----------------~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~-~~~~~~------------ 220 (425)
T PRK12317 171 -----------------KMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDN-LKPPEK------------ 220 (425)
T ss_pred -----------------HhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhc-CCCCcc------------
Confidence 1000011135788999999999975 8888754 565532
Q ss_pred cccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEE
Q 008294 377 EATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDII 456 (571)
Q Consensus 377 ~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv 456 (571)
+.+.||.+.|..++..+++|++..|+|.+|+++.||.|+..+.+...+|++|... ..++++|.|||.|
T Consensus 221 --------~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v 288 (425)
T PRK12317 221 --------PTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMH----HEELPQAEPGDNI 288 (425)
T ss_pred --------ccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEEC----CcccCEECCCCeE
Confidence 1368999999999999999999999999999999999999988888889988754 3789999999999
Q ss_pred EE--eCCC--CccccceecCCCCc
Q 008294 457 AL--AGLK--DTITGETLCDADHP 476 (571)
Q Consensus 457 ~i--~gl~--~~~~Gdtl~~~~~~ 476 (571)
++ .+++ ++..|++||+++.+
T Consensus 289 ~i~l~~~~~~~i~rG~vl~~~~~~ 312 (425)
T PRK12317 289 GFNVRGVGKKDIKRGDVCGHPDNP 312 (425)
T ss_pred EEEECCCCHHHccCccEecCCCCC
Confidence 87 4554 47899999987644
No 40
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-35 Score=296.95 Aligned_cols=274 Identities=27% Similarity=0.344 Sum_probs=221.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCccee------------eee-ecCcccccchhhhhhhceeEeeceEEEeecC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTYWNK 154 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~------------g~~-~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 154 (571)
+...|++++||+++|||||+.+|+|.+|.+... |.- ..-.+.+|..++|++||+|++.+...++.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 457899999999999999999999999987651 110 1234779999999999999999999999999
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCCeE-EEEecCCccccch--
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPRI-CFVNKMDRLGANF-- 224 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~-- 224 (571)
+.++|+|||||.||..+++.+..+||.+||||||..+ ...||++|+..++..++..+ |++||||...++.
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~r 164 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEER 164 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHH
Confidence 9999999999999999999999999999999999988 89999999999999999875 5689999987653
Q ss_pred -hhhHHHHHH---HhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHh
Q 008294 225 -FRTRDMIVT---NLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIV 300 (571)
Q Consensus 225 -~~~~~~i~~---~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 300 (571)
+++..++.. .+|.+.
T Consensus 165 f~ei~~~v~~l~k~~G~~~------------------------------------------------------------- 183 (428)
T COG5256 165 FEEIVSEVSKLLKMVGYNP------------------------------------------------------------- 183 (428)
T ss_pred HHHHHHHHHHHHHHcCCCc-------------------------------------------------------------
Confidence 222222222 111111
Q ss_pred hcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCC
Q 008294 301 ELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAM 368 (571)
Q Consensus 301 ~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~------------~Lld~i~~~lP~p~~~~~~ 368 (571)
.-+|++.+||++|.|+. .||++|. .+..|...
T Consensus 184 --------------------------------~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~~--- 227 (428)
T COG5256 184 --------------------------------KDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPERP--- 227 (428)
T ss_pred --------------------------------cCCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCCCC---
Confidence 11345555888887764 4777776 44444321
Q ss_pred CCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecC
Q 008294 369 KGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVK 448 (571)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~ 448 (571)
-+.||++.|.+++...++|++..|||-+|.|++||+|+..+.+...+|+++..- .++++
T Consensus 228 -----------------~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~----~~~~~ 286 (428)
T COG5256 228 -----------------LDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH----HEEIS 286 (428)
T ss_pred -----------------CCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeec----ccccc
Confidence 379999999999998899999999999999999999999998888889888755 38899
Q ss_pred eecCCCEEEE--eCCC--CccccceecCCCCcccc
Q 008294 449 VALAGDIIAL--AGLK--DTITGETLCDADHPILL 479 (571)
Q Consensus 449 ~a~aGdiv~i--~gl~--~~~~Gdtl~~~~~~~~l 479 (571)
.+.|||.+.+ +|++ +++.||++++.+++...
T Consensus 287 ~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~~t~ 321 (428)
T COG5256 287 QAEPGDNVGFNVRGVEKNDIRRGDVIGHSDNPPTV 321 (428)
T ss_pred cCCCCCeEEEEecCCchhccCCccEeccCCCCccc
Confidence 9999999988 5554 49999999998877543
No 41
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.5e-35 Score=310.17 Aligned_cols=271 Identities=27% Similarity=0.364 Sum_probs=215.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...||+++||+|+|||||+++|++....... +. ......+|+.++|+++|+|++.....+.+++.+++|+|||||.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~-~~-~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGG-AE-AKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccC-Cc-ccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 45789999999999999999999864321110 11 11223689999999999999999888888899999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccc--hhhhHHHHHHHhCCcceeeec
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGAN--FFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~--~~~~~~~i~~~l~~~~~~~~~ 244 (571)
|...+..++..+|++++|||+.+|+..++++++..+...++|.+ +++||+|+...+ ++.+.+++++.
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~---------- 157 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL---------- 157 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHH----------
Confidence 99999999999999999999999999999999999999999987 589999986421 11111122211
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
T Consensus 158 -------------------------------------------------------------------------------- 157 (396)
T PRK00049 158 -------------------------------------------------------------------------------- 157 (396)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcccCcceeeeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEE
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLA 394 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~----------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 394 (571)
+.........+|++++||++|. |+..|+++|.+++|.|.. +.+.||.+.|
T Consensus 158 l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~--------------------~~~~p~r~~I 217 (396)
T PRK00049 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPER--------------------AIDKPFLMPI 217 (396)
T ss_pred HHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCC--------------------CCCCCeEEEE
Confidence 1111111223678888998864 678999999999987743 1368999999
Q ss_pred EEEeecCCCceEEEEEEecceeCCCCEEEeCCC--CceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Cccccc
Q 008294 395 FKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGE 468 (571)
Q Consensus 395 ~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gd 468 (571)
..+|..+++|.++.|+|.+|++++||.|+..+. ++..+|++|...+ +++++|.|||.+++ .|++ ++..|+
T Consensus 218 ~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~----~~~~~a~~Gd~v~l~l~~i~~~~i~~G~ 293 (396)
T PRK00049 218 EDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFR----KLLDEGQAGDNVGALLRGIKREDVERGQ 293 (396)
T ss_pred EEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECC----cEeCEEcCCCEEEEEeCCCCHHHCCcce
Confidence 999999999999999999999999999987654 5667888887543 78999999999998 6663 488999
Q ss_pred eecCCC
Q 008294 469 TLCDAD 474 (571)
Q Consensus 469 tl~~~~ 474 (571)
+||+++
T Consensus 294 vl~~~~ 299 (396)
T PRK00049 294 VLAKPG 299 (396)
T ss_pred EEecCC
Confidence 999875
No 42
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=3.9e-34 Score=312.81 Aligned_cols=304 Identities=24% Similarity=0.287 Sum_probs=235.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCe-EEEEEcCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHV 166 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~i~liDTPG~~ 166 (571)
.+.++|+++||+|+|||||+++|..... . ....+|+|.+.....+.+.+. .++|||||||.
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v---~---------------~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe 146 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKV---A---------------QGEAGGITQHIGAYHVENEDGKMITFLDTPGHE 146 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCc---c---------------cccCCceeecceEEEEEECCCcEEEEEECCCCc
Confidence 4668999999999999999999962110 0 011357888888778887655 89999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccC
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (571)
+|...+.++++.+|++|+|||+.+|...|+.+++..+...++|+++++||+|+.+++.+++.+++++ ++.
T Consensus 147 ~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~-~g~--------- 216 (587)
T TIGR00487 147 AFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE-YGL--------- 216 (587)
T ss_pred chhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHH-hhh---------
Confidence 9999999999999999999999999999999999999999999999999999976554433333321 000
Q ss_pred CCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHH
Q 008294 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (571)
Q Consensus 247 ~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~ 326 (571)
..+.
T Consensus 217 -----------------------------------------------------------~~~~----------------- 220 (587)
T TIGR00487 217 -----------------------------------------------------------VPED----------------- 220 (587)
T ss_pred -----------------------------------------------------------hHHh-----------------
Confidence 0000
Q ss_pred hhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceE
Q 008294 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406 (571)
Q Consensus 327 ~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i 406 (571)
.+...|++.+||++|.|+++|+++|.... ... ....+++.|+.+.|++++.+++.|.+
T Consensus 221 ----~~~~~~~v~iSAktGeGI~eLl~~I~~~~-~~~-----------------~l~~~~~~~~~~~V~ev~~~~g~G~v 278 (587)
T TIGR00487 221 ----WGGDTIFVPVSALTGDGIDELLDMILLQS-EVE-----------------ELKANPNGQASGVVIEAQLDKGRGPV 278 (587)
T ss_pred ----cCCCceEEEEECCCCCChHHHHHhhhhhh-hhc-----------------cccCCCCCCceeEEEEEEEeCCCcEE
Confidence 01124788899999999999999997421 000 01234678999999999999999999
Q ss_pred EEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCc-cccceecCCCCc---------
Q 008294 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP--------- 476 (571)
Q Consensus 407 ~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~Gdtl~~~~~~--------- 476 (571)
++++|++|+|++||.|...+. ..+|..++..+ ...+++|.||++|.|.|++++ .+||+|+-..+.
T Consensus 279 ~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~~---g~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~ 353 (587)
T TIGR00487 279 ATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDEN---GKSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAEK 353 (587)
T ss_pred EEEEEEeCEEeCCCEEEECCC--ccEEEEEECCC---CCCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHH
Confidence 999999999999999988764 23555555444 367999999999999999987 899999732111
Q ss_pred ---------------ccccCCCC-----CCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEE
Q 008294 477 ---------------ILLERMDF-----PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSR 522 (571)
Q Consensus 477 ---------------~~l~~~~~-----~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~ 522 (571)
..+..+.. ..+.+.+.|++...+..+.|.++|.++..+++++.+-.
T Consensus 354 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~~ 419 (587)
T TIGR00487 354 RAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIH 419 (587)
T ss_pred HHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEEE
Confidence 11222211 14889999999999999999999999999999988754
No 43
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=1.8e-34 Score=305.78 Aligned_cols=271 Identities=24% Similarity=0.269 Sum_probs=208.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcce--eeeee-----cC--------cccccchhhhhhhceeEeeceEEEeecCeE
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVH-----EG--------TATMDWMEQEQERGITITSAATTTYWNKHR 156 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~--~g~~~-----~g--------~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~ 156 (571)
+|+++||+|+|||||+++|++.+|.+.. .+.+. .| ++++|..++|++||+|++.....+.+++.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 7899999999999999999999998765 22221 22 358999999999999999999999999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHHHHHHh
Q 008294 157 INIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNL 235 (571)
Q Consensus 157 i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~l 235 (571)
++|||||||.+|..++..++..+|++++|||+.+|+..|+++++..+...++| +++|+||+|+...+. +.++++.+.+
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~-~~~~~i~~~~ 160 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDE-EVFENIKKDY 160 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchH-HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998886 567999999865331 1122221111
Q ss_pred CCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCC
Q 008294 236 GAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNE 315 (571)
Q Consensus 236 ~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~ 315 (571)
T Consensus 161 -------------------------------------------------------------------------------- 160 (406)
T TIGR02034 161 -------------------------------------------------------------------------------- 160 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHhhcccCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCcccccccc
Q 008294 316 PDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPEATLERA 383 (571)
Q Consensus 316 ~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~ 383 (571)
...++... ...+|++.+||++|.|+.. |++.|.. +|.|..
T Consensus 161 ------~~~~~~~~--~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~-~~~~~~------------------- 212 (406)
T TIGR02034 161 ------LAFAEQLG--FRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVERD------------------- 212 (406)
T ss_pred ------HHHHHHcC--CCCccEEEeecccCCCCcccccCCCccchhHHHHHHHh-cCCCCC-------------------
Confidence 00011000 0124677889999999874 6777755 444432
Q ss_pred CCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeC--C
Q 008294 384 ASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAG--L 461 (571)
Q Consensus 384 ~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~g--l 461 (571)
+.+.||.+.|..++.....+.-..|+|.+|+|++||.|+..+.+...+|++|.... .++++|.|||.+++.- .
T Consensus 213 -~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~----~~~~~a~~G~~v~l~l~~~ 287 (406)
T TIGR02034 213 -AQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFD----GDLEQARAGQAVTLTLDDE 287 (406)
T ss_pred -cCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECC----cccCEeCCCCEEEEEECCc
Confidence 13578888777765432222225699999999999999998888888999987543 5799999999999953 3
Q ss_pred CCccccceecCCCCc
Q 008294 462 KDTITGETLCDADHP 476 (571)
Q Consensus 462 ~~~~~Gdtl~~~~~~ 476 (571)
+++..|++||+++.+
T Consensus 288 ~~i~rG~vl~~~~~~ 302 (406)
T TIGR02034 288 IDISRGDLLAAADSA 302 (406)
T ss_pred cccCCccEEEcCCCC
Confidence 458899999988654
No 44
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=3.1e-34 Score=306.77 Aligned_cols=278 Identities=28% Similarity=0.366 Sum_probs=217.9
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceee------------e-eecCcccccchhhhhhhceeEeeceEEEeec
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG------------E-VHEGTATMDWMEQEQERGITITSAATTTYWN 153 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g------------~-~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~ 153 (571)
.+..+||+++||+|+|||||+++|++.+|.+.... . .....+.+|..++|+++|+|++.....+.++
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 34578999999999999999999999888764311 0 0112357899999999999999999999999
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC---CchhHHHHHHHHHhcCC-CeEEEEecCCccccchhhhHH
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG---VEPQSETVWRQADKYGV-PRICFVNKMDRLGANFFRTRD 229 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g---~~~~~~~~~~~~~~~~~-p~ivviNK~D~~~~~~~~~~~ 229 (571)
+..++|||||||.+|...+..+++.+|++++|||+.++ ...++.+++..+...++ |+++|+||+|+...+..+ ++
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~-~~ 162 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEE-FE 162 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHH-HH
Confidence 99999999999999999999999999999999999998 77888888877777775 477899999986432111 11
Q ss_pred HHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Q 008294 230 MIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMES 309 (571)
Q Consensus 230 ~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~ 309 (571)
.+.
T Consensus 163 ~~~----------------------------------------------------------------------------- 165 (426)
T TIGR00483 163 AIK----------------------------------------------------------------------------- 165 (426)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 111
Q ss_pred HhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCcc
Q 008294 310 YLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPE 377 (571)
Q Consensus 310 ~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~~ 377 (571)
+++.+.++........+|++.+||++|.|+.+ |+++|.+ +|.|..
T Consensus 166 ---------~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~-~~~~~~------------- 222 (426)
T TIGR00483 166 ---------KEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA-LEPPEK------------- 222 (426)
T ss_pred ---------HHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc-CCCCCC-------------
Confidence 01111111111111235788899999999874 8888865 554432
Q ss_pred ccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEE
Q 008294 378 ATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIA 457 (571)
Q Consensus 378 ~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~ 457 (571)
+.+.||.+.|..++..+++|+++.|||.+|+|+.||.|...+.+...+|++|.... .++++|.|||+++
T Consensus 223 -------~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~----~~~~~a~aG~~v~ 291 (426)
T TIGR00483 223 -------PTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHH----EQIEQAEPGDNIG 291 (426)
T ss_pred -------ccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECC----cccCEEcCCCEEE
Confidence 13689999999999999999999999999999999999999988888899987553 7899999999998
Q ss_pred E--eCCC--CccccceecCCCCc
Q 008294 458 L--AGLK--DTITGETLCDADHP 476 (571)
Q Consensus 458 i--~gl~--~~~~Gdtl~~~~~~ 476 (571)
+ .+++ ++..|++|++++.+
T Consensus 292 i~l~~i~~~~i~rG~vl~~~~~~ 314 (426)
T TIGR00483 292 FNVRGVSKKDIRRGDVCGHPDNP 314 (426)
T ss_pred EEECCCChhhcccceEEecCCCC
Confidence 8 5553 48899999987543
No 45
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.4e-33 Score=303.26 Aligned_cols=277 Identities=24% Similarity=0.246 Sum_probs=211.0
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcce--eeee-------------ecCcccccchhhhhhhceeEeeceEEEe
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEV-------------HEGTATMDWMEQEQERGITITSAATTTY 151 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~--~g~~-------------~~g~~~~d~~~~e~~~g~t~~~~~~~~~ 151 (571)
.+...+|+++||+|+|||||+++|++.+|.+.. .+++ ....+++|+.++|++||+|++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 455789999999999999999999999998765 2222 1223589999999999999999999999
Q ss_pred ecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHH
Q 008294 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDM 230 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~ 230 (571)
+++.+++|||||||.+|..++..++..+|++++|||+.+|+..|+++++..+...+++ +++|+||+|+...+. +.++.
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~-~~~~~ 182 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSE-EVFER 182 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchh-HHHHH
Confidence 9999999999999999999999999999999999999999999999999999888864 677999999865331 11221
Q ss_pred HHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008294 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESY 310 (571)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~ 310 (571)
+.+.+
T Consensus 183 i~~~l--------------------------------------------------------------------------- 187 (474)
T PRK05124 183 IREDY--------------------------------------------------------------------------- 187 (474)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 21110
Q ss_pred hcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCccc
Q 008294 311 LEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPEA 378 (571)
Q Consensus 311 l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~~~ 378 (571)
...+... ......|++.+||++|.|+.. |++.| +.+|.|..
T Consensus 188 -----------~~~~~~~-~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L-~~i~~~~~-------------- 240 (474)
T PRK05124 188 -----------LTFAEQL-PGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVL-ETVDIQRV-------------- 240 (474)
T ss_pred -----------HHHHHhc-CCCCCceEEEEEeecCCCcccccccccccchhhHHHHH-hhcCCCCC--------------
Confidence 0001000 001235788889999999864 55544 45554432
Q ss_pred cccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE
Q 008294 379 TLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL 458 (571)
Q Consensus 379 ~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i 458 (571)
+.+.|+.+.|..++...+...-..|+|.+|+|+.||.|+..+.+...+|++|...+ .++++|.|||.|++
T Consensus 241 ------~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~----~~v~~A~aG~~V~l 310 (474)
T PRK05124 241 ------VDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFD----GDLEEAFAGEAITL 310 (474)
T ss_pred ------CCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcC----ccccCcCCCCEEEE
Confidence 13678999888776432211224699999999999999999988888999998554 57899999999999
Q ss_pred eC--CCCccccceecCCCCc
Q 008294 459 AG--LKDTITGETLCDADHP 476 (571)
Q Consensus 459 ~g--l~~~~~Gdtl~~~~~~ 476 (571)
.- ..++..|++||+++.+
T Consensus 311 ~L~~~~~i~rG~VL~~~~~~ 330 (474)
T PRK05124 311 VLEDEIDISRGDLLVAADEA 330 (474)
T ss_pred EeCCccccCCccEEECCCCC
Confidence 53 3458899999987654
No 46
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-33 Score=270.25 Aligned_cols=274 Identities=28% Similarity=0.406 Sum_probs=212.8
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.+...||+.|||+|+|||||..++........ +.........|..|+|++||+|++.+.+.++..+..+-.+|||||.
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~--~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa 86 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKG--GAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhc--cccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence 34578999999999999999999962221100 0101111234667899999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEE-EEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iv-viNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
||.+.++.+..++|++|+||.|.+|..+||++|+..+++.++|.++ ++||+|+.+..
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~---------------------- 144 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDE---------------------- 144 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcH----------------------
Confidence 9999999999999999999999999999999999999999998765 68999987521
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
+++|.+. .|+++.|
T Consensus 145 ------------------------------------------------ellelVe------------------mEvreLL 158 (394)
T COG0050 145 ------------------------------------------------ELLELVE------------------MEVRELL 158 (394)
T ss_pred ------------------------------------------------HHHHHHH------------------HHHHHHH
Confidence 1111111 2333444
Q ss_pred HhhcccCcceeeeeccccCCC--------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEE
Q 008294 326 RKGTIAGSFVPVLCGSAFKNK--------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 397 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~--------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~ 397 (571)
...-..+.-.||+.+||+.-. -|.+|++++.+++|.|.. +.+.||.+.|-.+
T Consensus 159 s~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per--------------------~~dkPflmpvEdv 218 (394)
T COG0050 159 SEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER--------------------DIDKPFLMPVEDV 218 (394)
T ss_pred HHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC--------------------cccccccccceee
Confidence 444445556789999988642 267999999999999975 2479999999999
Q ss_pred eecCCCceEEEEEEecceeCCCCEEEeCCCC--ceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Cccccceec
Q 008294 398 MSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETLC 471 (571)
Q Consensus 398 ~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl~ 471 (571)
|...+.|++++|||-+|+|+.|+.+....-. ++..+..+-++ ++..++..|||.+++ +|.+ ++..|.+|+
T Consensus 219 fsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemf----rk~ld~~~AGdnvg~llRg~~r~~veRGqvLa 294 (394)
T COG0050 219 FSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGVKREDVERGQVLA 294 (394)
T ss_pred EEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHH----HHHHhccccCCCcceEEEeccccceecceEee
Confidence 9999999999999999999999999865433 22334443323 367899999999877 6664 488999998
Q ss_pred CCC
Q 008294 472 DAD 474 (571)
Q Consensus 472 ~~~ 474 (571)
.++
T Consensus 295 kpg 297 (394)
T COG0050 295 KPG 297 (394)
T ss_pred cCC
Confidence 764
No 47
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=7.3e-33 Score=306.39 Aligned_cols=298 Identities=22% Similarity=0.294 Sum_probs=230.0
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----cCeEEEEEcC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----NKHRINIIDT 162 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~----~~~~i~liDT 162 (571)
..+.++|+++||+|||||||+++|....+.. ...+|+|.......+.+ .+..++||||
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~------------------~e~~GiTq~i~~~~v~~~~~~~~~kItfiDT 302 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQ------------------KEAGGITQKIGAYEVEFEYKDENQKIVFLDT 302 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCcc------------------ccCCccccccceEEEEEEecCCceEEEEEEC
Confidence 3477899999999999999999997433221 11246676665555544 3589999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceee
Q 008294 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (571)
Q Consensus 163 PG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 242 (571)
|||.+|...+.++++.+|++|+|||+.+|+..++.+++..+...++|+++|+||+|+...+..++.+++... +.
T Consensus 303 PGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~-~l----- 376 (742)
T CHL00189 303 PGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY-NL----- 376 (742)
T ss_pred CcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh-cc-----
Confidence 999999999999999999999999999999999999999999999999999999998765443333332210 00
Q ss_pred eccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHH
Q 008294 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (571)
Q Consensus 243 ~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~ 322 (571)
+. +
T Consensus 377 ---------------------------------------------------------------l~-----------e--- 379 (742)
T CHL00189 377 ---------------------------------------------------------------IP-----------E--- 379 (742)
T ss_pred ---------------------------------------------------------------ch-----------H---
Confidence 00 0
Q ss_pred HHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCC
Q 008294 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPF 402 (571)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~ 402 (571)
..+..+|++++||++|.|+++|+++|..+...+. ..++++.|+.++|+++..|++
T Consensus 380 -------~~g~~vpvv~VSAktG~GIdeLle~I~~l~e~~~------------------lk~~~~~~~~g~V~e~~iD~~ 434 (742)
T CHL00189 380 -------KWGGDTPMIPISASQGTNIDKLLETILLLAEIED------------------LKADPTQLAQGIILEAHLDKT 434 (742)
T ss_pred -------hhCCCceEEEEECCCCCCHHHHHHhhhhhhhhhc------------------ccCCCCCCceEEEEEEEEcCC
Confidence 0123568999999999999999999987642111 123457899999999999999
Q ss_pred CceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCC-ccccceecCCCCcc----
Q 008294 403 VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLCDADHPI---- 477 (571)
Q Consensus 403 ~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~-~~~Gdtl~~~~~~~---- 477 (571)
.|.+++++|++|+|+.||.|++.+ +.++++.|.+....++++|.|||+|.|.|+++ ..+||+|.-..+.-
T Consensus 435 ~G~V~~~~V~sGtLr~GD~vv~g~-----~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v~~~e~~a~~ 509 (742)
T CHL00189 435 KGPVATILVQNGTLHIGDIIVIGT-----SYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQVFNSEKEAKL 509 (742)
T ss_pred CceEEEEEEEcCEEecCCEEEECC-----cceEEEEEEcCCCcCccEEcCCCceEecCcccCCCCCCEEEEeCCHHHHHH
Confidence 999999999999999999999876 35677778877789999999999999999955 66899996322110
Q ss_pred -----------------cccCC-----CCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhC
Q 008294 478 -----------------LLERM-----DFPDPVIKVAIEPKTKADIDKMANGLIKLAQED 515 (571)
Q Consensus 478 -----------------~l~~~-----~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eD 515 (571)
.+... .--.+.+.+-|.+..++..+.+..+|.++..+.
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~ 569 (742)
T CHL00189 510 KIIKNKENNKKDTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKK 569 (742)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCc
Confidence 00000 012467889999999999999999999985543
No 48
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-34 Score=279.60 Aligned_cols=273 Identities=29% Similarity=0.401 Sum_probs=217.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+..-||+.|||+++|||||..++....-.. -+.......-.|..++|+.||||++...+.++...+.+--+|||||.|
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~--g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEK--GGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhc--cccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 346799999999999999999995221100 011111113356678999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEE-EEecCCccc-cchhhhHHHHHHHhCCcceeeecc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLG-ANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iv-viNK~D~~~-~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
|.+.++.+..+.|++|+||.|++|..+||++|+.++++.+++.++ ++||.|... .+.-++++
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVE---------------- 193 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVE---------------- 193 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHH----------------
Confidence 999999999999999999999999999999999999999999765 589999873 22111111
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
=|+++.|
T Consensus 194 -------------------------------------------------------------------------mE~RElL 200 (449)
T KOG0460|consen 194 -------------------------------------------------------------------------MEIRELL 200 (449)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 2344444
Q ss_pred HhhcccCcceeeeeccccCC-------CC---hHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEE
Q 008294 326 RKGTIAGSFVPVLCGSAFKN-------KG---VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAF 395 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~-------~G---v~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 395 (571)
...-..+.-+||++|||+.- .| |..|||++.+++|.|.. +-+.||.+.|-
T Consensus 201 se~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R--------------------~~~~pFl~pie 260 (449)
T KOG0460|consen 201 SEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER--------------------DLDKPFLLPIE 260 (449)
T ss_pred HHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc--------------------ccCCCceeehh
Confidence 55555667789999998752 22 67899999999999975 24789999999
Q ss_pred EEeecCCCceEEEEEEecceeCCCCEEEeCCCCc--eeecceEEEeccCceeecCeecCCCEEEE--eCCC--Cccccce
Q 008294 396 KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGET 469 (571)
Q Consensus 396 k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~--~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdt 469 (571)
.+|..+++|+++.||+-+|+|++||.+-....++ +..|..|.+++ ..+++|.|||.+++ +|++ +++.|.+
T Consensus 261 ~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~----K~ld~a~AGDn~G~LlRGik~~dvkRGmv 336 (449)
T KOG0460|consen 261 DVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFR----KSLDEAQAGDNLGALLRGIKREDVKRGMV 336 (449)
T ss_pred heeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHH----HHHHhcccccceehhhhcCCHHHHhcccE
Confidence 9999999999999999999999999998655443 34466665444 78999999999987 7776 5899999
Q ss_pred ecCCCC
Q 008294 470 LCDADH 475 (571)
Q Consensus 470 l~~~~~ 475 (571)
+|.++.
T Consensus 337 l~~pGs 342 (449)
T KOG0460|consen 337 LAKPGS 342 (449)
T ss_pred EecCCc
Confidence 998765
No 49
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=2.4e-32 Score=290.25 Aligned_cols=256 Identities=20% Similarity=0.273 Sum_probs=200.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee---------------c
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------N 153 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------------~ 153 (571)
...+|+++||++||||||+.+|. | ...+.+++|++||+|++..+..+.+ .
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLt---g------------~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~ 97 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALS---G------------VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYG 97 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHh---C------------CCcccchhhHHhCCchhccccccccccCcccCCcccccccC
Confidence 35789999999999999999995 2 2346678999999999988775521 0
Q ss_pred ------------------CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-CchhHHHHHHHHHhcCCC-eEEE
Q 008294 154 ------------------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGVP-RICF 213 (571)
Q Consensus 154 ------------------~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~~~p-~ivv 213 (571)
...++|||||||.+|..++..++..+|++++|||+.++ +..||++++..+...+++ +++|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVv 177 (460)
T PTZ00327 98 SSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIIL 177 (460)
T ss_pred CCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEE
Confidence 24799999999999999999999999999999999986 799999999999989887 5789
Q ss_pred EecCCccccc-hhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHH
Q 008294 214 VNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYR 292 (571)
Q Consensus 214 iNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 292 (571)
+||+|+...+ ..+.++++++.+
T Consensus 178 lNKiDlv~~~~~~~~~~ei~~~l--------------------------------------------------------- 200 (460)
T PTZ00327 178 QNKIDLVKEAQAQDQYEEIRNFV--------------------------------------------------------- 200 (460)
T ss_pred EecccccCHHHHHHHHHHHHHHH---------------------------------------------------------
Confidence 9999986432 122222222111
Q ss_pred HHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCC
Q 008294 293 SQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTD 372 (571)
Q Consensus 293 ~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~ 372 (571)
... .....|++.+||++|.|++.|++.|.+.+|.|..
T Consensus 201 ---------------------------------~~~--~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r-------- 237 (460)
T PTZ00327 201 ---------------------------------KGT--IADNAPIIPISAQLKYNIDVVLEYICTQIPIPKR-------- 237 (460)
T ss_pred ---------------------------------Hhh--ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCC--------
Confidence 000 0124589999999999999999999999988743
Q ss_pred CCCccccccccCCCCCCeEEEEEEEeecC--------CCceEEEEEEecceeCCCCEEEeCCCC-------------cee
Q 008294 373 PENPEATLERAASDDEPFAGLAFKIMSDP--------FVGSLTFVRVYAGTLSAGSYVLNANKG-------------KKE 431 (571)
Q Consensus 373 ~~~~~~~~~~~~~~~~p~~~~V~k~~~d~--------~~G~i~~~rV~sG~l~~gd~v~~~~~~-------------~~~ 431 (571)
+.+.|+.++|.+.|... ++|.+..|+|.+|++++||.|...+.+ ...
T Consensus 238 ------------~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~ 305 (460)
T PTZ00327 238 ------------DLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRT 305 (460)
T ss_pred ------------CCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceE
Confidence 13678999998877443 379999999999999999999988754 235
Q ss_pred ecceEEEeccCceeecCeecCCCEEEEe-----CCC--CccccceecCCCC
Q 008294 432 RIGRLLEMHANSREDVKVALAGDIIALA-----GLK--DTITGETLCDADH 475 (571)
Q Consensus 432 ~i~~i~~~~g~~~~~v~~a~aGdiv~i~-----gl~--~~~~Gdtl~~~~~ 475 (571)
+|++|... ..++++|.|||.++|. +++ ++..|++|+.++.
T Consensus 306 ~VksI~~~----~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~ 352 (460)
T PTZ00327 306 RIVSLFAE----NNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGK 352 (460)
T ss_pred EEEEEEEC----CeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCC
Confidence 77777643 4889999999999994 332 3678999998653
No 50
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=3.9e-32 Score=299.32 Aligned_cols=251 Identities=21% Similarity=0.254 Sum_probs=203.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCCcHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~f~~ 170 (571)
.|+++||+|+|||||+++|. |. .+|..++|+++|+|+......+.. ++..++|||||||.+|..
T Consensus 2 ii~~~GhvdhGKTtLi~aLt---g~------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~ 66 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAIT---GV------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLS 66 (614)
T ss_pred EEEEECCCCCCHHHHHHHHh---CC------------CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHH
Confidence 58999999999999999995 21 246677899999999998777755 467899999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccccc-hhhhHHHHHHHhCCcceeeeccCCC
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGA 248 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~ 248 (571)
.+..++..+|++++|||+.+|+.+|+++++..+...++|. ++|+||+|+...+ ...+.+++++.+
T Consensus 67 ~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l------------- 133 (614)
T PRK10512 67 NMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVL------------- 133 (614)
T ss_pred HHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHH-------------
Confidence 9999999999999999999999999999999999999996 6899999986432 122222222111
Q ss_pred CCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhh
Q 008294 249 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKG 328 (571)
Q Consensus 249 ~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~ 328 (571)
...
T Consensus 134 -----------------------------------------------------------------------------~~~ 136 (614)
T PRK10512 134 -----------------------------------------------------------------------------REY 136 (614)
T ss_pred -----------------------------------------------------------------------------Hhc
Confidence 000
Q ss_pred cccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEE
Q 008294 329 TIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTF 408 (571)
Q Consensus 329 ~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~ 408 (571)
.....|++++||++|.|+++|++.|.++. .|.. +.++||.+.|.++|..++.|+++.
T Consensus 137 --~~~~~~ii~VSA~tG~gI~~L~~~L~~~~-~~~~--------------------~~~~~~rl~Id~vf~v~G~GtVvt 193 (614)
T PRK10512 137 --GFAEAKLFVTAATEGRGIDALREHLLQLP-EREH--------------------AAQHRFRLAIDRAFTVKGAGLVVT 193 (614)
T ss_pred --CCCCCcEEEEeCCCCCCCHHHHHHHHHhh-cccc--------------------CcCCCceEEEEEEeccCCCeEEEE
Confidence 01135789999999999999999998764 3322 136899999999999999999999
Q ss_pred EEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eC-CC--CccccceecCCC
Q 008294 409 VRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AG-LK--DTITGETLCDAD 474 (571)
Q Consensus 409 ~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~g-l~--~~~~Gdtl~~~~ 474 (571)
|+|.+|+++.||.|...+.+...+|++|.... .++++|.|||.+++ .| ++ ++..||+||+++
T Consensus 194 Gtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~----~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~ 260 (614)
T PRK10512 194 GTALSGEVKVGDTLWLTGVNKPMRVRGLHAQN----QPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA 260 (614)
T ss_pred EEEecceEecCCEEEEcCCCCcEEEEEEecCC----cCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC
Confidence 99999999999999998888888888876442 78999999999988 44 53 488999999764
No 51
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=2.7e-31 Score=281.39 Aligned_cols=259 Identities=22% Similarity=0.316 Sum_probs=200.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--------------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------------- 153 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-------------- 153 (571)
+...||+++||.|+|||||+++|. + .++|..++|+++|+|+......+.+.
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~---~------------~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 71 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALT---G------------VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTE 71 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhh---C------------eecccCHhHHhcCcEEEecccccccccccccCcccccccc
Confidence 345899999999999999999994 2 24788899999999999876543331
Q ss_pred ------------CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCC-CeEEEEecCCc
Q 008294 154 ------------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDR 219 (571)
Q Consensus 154 ------------~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~-p~ivviNK~D~ 219 (571)
.+.++|||||||.+|...+..++..+|++++|+|+.++. ..++.+++..+...++ |+++|+||+|+
T Consensus 72 ~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 72 PKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDL 151 (411)
T ss_pred ccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 268999999999999999999999999999999999988 7899999988888876 47889999998
Q ss_pred cccch-hhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHH
Q 008294 220 LGANF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIET 298 (571)
Q Consensus 220 ~~~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~ 298 (571)
...+. ....+++++.
T Consensus 152 ~~~~~~~~~~~~i~~~---------------------------------------------------------------- 167 (411)
T PRK04000 152 VSKERALENYEQIKEF---------------------------------------------------------------- 167 (411)
T ss_pred ccchhHHHHHHHHHHH----------------------------------------------------------------
Confidence 65321 0111111110
Q ss_pred HhhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccc
Q 008294 299 IVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEA 378 (571)
Q Consensus 299 ~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~ 378 (571)
+ ... .....|++.+||++|.|+++|++.|.+.+|.|..
T Consensus 168 ------------l--------------~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~-------------- 205 (411)
T PRK04000 168 ------------V--------------KGT--VAENAPIIPVSALHKVNIDALIEAIEEEIPTPER-------------- 205 (411)
T ss_pred ------------h--------------ccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCC--------------
Confidence 0 000 0123578999999999999999999999887743
Q ss_pred cccccCCCCCCeEEEEEEEeec--------CCCceEEEEEEecceeCCCCEEEeCCCCc------------eeecceEEE
Q 008294 379 TLERAASDDEPFAGLAFKIMSD--------PFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLE 438 (571)
Q Consensus 379 ~~~~~~~~~~p~~~~V~k~~~d--------~~~G~i~~~rV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~ 438 (571)
+.+.|+.+.|.++|.. +++|.+..|||.+|+|++||.|...+.+. ..+|++|..
T Consensus 206 ------~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~ 279 (411)
T PRK04000 206 ------DLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRA 279 (411)
T ss_pred ------CCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEE
Confidence 1368999999988743 34677999999999999999999887642 357888764
Q ss_pred eccCceeecCeecCCCEEEEe-----CCC--CccccceecCCCCcc
Q 008294 439 MHANSREDVKVALAGDIIALA-----GLK--DTITGETLCDADHPI 477 (571)
Q Consensus 439 ~~g~~~~~v~~a~aGdiv~i~-----gl~--~~~~Gdtl~~~~~~~ 477 (571)
. ..++++|.|||.++|. +++ ++..|++||+++.+.
T Consensus 280 ~----~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~ 321 (411)
T PRK04000 280 G----GEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLP 321 (411)
T ss_pred C----CEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCC
Confidence 4 3889999999999884 332 377899999886543
No 52
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=2.2e-31 Score=297.53 Aligned_cols=277 Identities=25% Similarity=0.231 Sum_probs=209.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCccee--e-----eeecC--------cccccchhhhhhhceeEeeceEEE
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI--G-----EVHEG--------TATMDWMEQEQERGITITSAATTT 150 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~--g-----~~~~g--------~~~~d~~~~e~~~g~t~~~~~~~~ 150 (571)
..+...+|+++||+|+|||||+++|++..|.+... + ....| ++.+|..++|+++|+|++.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 33445689999999999999999999998876521 1 11223 357899999999999999999999
Q ss_pred eecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHH
Q 008294 151 YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRD 229 (571)
Q Consensus 151 ~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~ 229 (571)
.+++.+++|||||||.+|...+..++..+|++++|||+.+|+..++++++..+...+++ +++|+||+|+...+.+ .++
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~-~~~ 178 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQE-VFD 178 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhH-HHH
Confidence 99999999999999999999999999999999999999999999999999999888864 6678999998643211 111
Q ss_pred HHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Q 008294 230 MIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMES 309 (571)
Q Consensus 230 ~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~ 309 (571)
.+..
T Consensus 179 ~i~~---------------------------------------------------------------------------- 182 (632)
T PRK05506 179 EIVA---------------------------------------------------------------------------- 182 (632)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1111
Q ss_pred HhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCCCCCCCCcc
Q 008294 310 YLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMKGTDPENPE 377 (571)
Q Consensus 310 ~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~------------~Lld~i~~~lP~p~~~~~~~~~~~~~~~ 377 (571)
++...+.... ...+|++++||++|.|+. .|++.|... |.|..
T Consensus 183 ----------~i~~~~~~~~--~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~-~~~~~------------- 236 (632)
T PRK05506 183 ----------DYRAFAAKLG--LHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETV-EIASD------------- 236 (632)
T ss_pred ----------HHHHHHHHcC--CCCccEEEEecccCCCccccccCCCcccHhHHHHHHhcC-CCCCC-------------
Confidence 0000010000 012467788999999986 477777544 43322
Q ss_pred ccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEE
Q 008294 378 ATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIA 457 (571)
Q Consensus 378 ~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~ 457 (571)
..+.|+.+.|..++...+.+.-..|+|.+|+|++||.|...+.+...+|++|...+ .++++|.|||.|+
T Consensus 237 -------~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~----~~~~~a~aG~~v~ 305 (632)
T PRK05506 237 -------RNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPD----GDLDEAFAGQAVT 305 (632)
T ss_pred -------cCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECC----ceeCEEcCCCeEE
Confidence 13678999888776533222225699999999999999999888888999997543 6699999999999
Q ss_pred EeC--CCCccccceecCCCCc
Q 008294 458 LAG--LKDTITGETLCDADHP 476 (571)
Q Consensus 458 i~g--l~~~~~Gdtl~~~~~~ 476 (571)
|.- -.++..|++||+++.+
T Consensus 306 i~l~~~~~i~rG~vL~~~~~~ 326 (632)
T PRK05506 306 LTLADEIDISRGDMLARADNR 326 (632)
T ss_pred EEecCccccCCccEEecCCCC
Confidence 953 2347899999988654
No 53
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=1.3e-30 Score=276.50 Aligned_cols=256 Identities=22% Similarity=0.323 Sum_probs=198.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------------- 152 (571)
...||+++||+|+|||||+++|. + ..+|..++|+++|+|+......+.+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt---~------------~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALT---G------------VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEP 67 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHh---C------------eecccCHhHHHcCceeEecccccccccccccCccccccccc
Confidence 35799999999999999999994 2 2367888999999999988654431
Q ss_pred ----------cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCCC-eEEEEecCCcc
Q 008294 153 ----------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGVP-RICFVNKMDRL 220 (571)
Q Consensus 153 ----------~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~p-~ivviNK~D~~ 220 (571)
.+..+++||||||.+|...+..++..+|++++|||+.+|. ..++.+++..+...+++ +++|+||+|+.
T Consensus 68 ~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 68 VCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred cccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 1468999999999999999999999999999999999998 89999999988888765 78889999986
Q ss_pred ccch-hhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHH
Q 008294 221 GANF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETI 299 (571)
Q Consensus 221 ~~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ 299 (571)
..+. .+.++++.+.
T Consensus 148 ~~~~~~~~~~~i~~~----------------------------------------------------------------- 162 (406)
T TIGR03680 148 SKEKALENYEEIKEF----------------------------------------------------------------- 162 (406)
T ss_pred CHHHHHHHHHHHHhh-----------------------------------------------------------------
Confidence 5321 1111111110
Q ss_pred hhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccc
Q 008294 300 VELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEAT 379 (571)
Q Consensus 300 ~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~ 379 (571)
+... ...-+|++.+||++|.|+++|+++|.+.+|.|..
T Consensus 163 -------------------------l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~--------------- 200 (406)
T TIGR03680 163 -------------------------VKGT--VAENAPIIPVSALHNANIDALLEAIEKFIPTPER--------------- 200 (406)
T ss_pred -------------------------hhhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCC---------------
Confidence 0000 0112578999999999999999999999887743
Q ss_pred ccccCCCCCCeEEEEEEEeecC--------CCceEEEEEEecceeCCCCEEEeCCCCc------------eeecceEEEe
Q 008294 380 LERAASDDEPFAGLAFKIMSDP--------FVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEM 439 (571)
Q Consensus 380 ~~~~~~~~~p~~~~V~k~~~d~--------~~G~i~~~rV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~~ 439 (571)
+.+.|+.+.|...|... ++|.+..|+|.+|+|++||.|...+.+. ..+|++|...
T Consensus 201 -----~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~ 275 (406)
T TIGR03680 201 -----DLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAG 275 (406)
T ss_pred -----CCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEEC
Confidence 13679999999888543 3678999999999999999999877542 2467777644
Q ss_pred ccCceeecCeecCCCEEEEe-----CCC--CccccceecCCCC
Q 008294 440 HANSREDVKVALAGDIIALA-----GLK--DTITGETLCDADH 475 (571)
Q Consensus 440 ~g~~~~~v~~a~aGdiv~i~-----gl~--~~~~Gdtl~~~~~ 475 (571)
..++++|.|||.++|. +++ ++..|++||+++.
T Consensus 276 ----~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~ 314 (406)
T TIGR03680 276 ----GYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGT 314 (406)
T ss_pred ----CEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCC
Confidence 3889999999999983 332 3678999998754
No 54
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=1.9e-30 Score=285.32 Aligned_cols=254 Identities=23% Similarity=0.287 Sum_probs=205.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++||+|||||||+++|. |. ..+..++|.++|+|++.....+.+++..++|||||||.+|...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLt---g~------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~ 66 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALT---GI------------AADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISN 66 (581)
T ss_pred EEEEECCCCCCHHHHHHHHh---Cc------------cCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHH
Confidence 79999999999999999995 21 1355678889999999998888888899999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccch-hhhHHHHHHHhCCcceeeeccCCCC
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANF-FRTRDMIVTNLGAKPLVVQLPVGAE 249 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~-~~~~~~i~~~l~~~~~~~~~pi~~~ 249 (571)
+..++..+|++++|||+.+|+..++.+++..+...++| +++|+||+|+...+. ..+.+++++.
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~--------------- 131 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQI--------------- 131 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHH---------------
Confidence 99999999999999999999999999999999999999 999999999865321 1111111110
Q ss_pred CCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhc
Q 008294 250 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 329 (571)
Q Consensus 250 ~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~ 329 (571)
+..+
T Consensus 132 ---------------------------------------------------------l~~~------------------- 135 (581)
T TIGR00475 132 ---------------------------------------------------------LNSY------------------- 135 (581)
T ss_pred ---------------------------------------------------------HHHh-------------------
Confidence 0000
Q ss_pred ccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEE
Q 008294 330 IAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFV 409 (571)
Q Consensus 330 ~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~ 409 (571)
......|++.+||++|.|++++++.|.+.++..... ..++||.+.|.++|..++.|+++.|
T Consensus 136 ~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~-------------------~~~~p~r~~Id~~f~v~G~GtVv~G 196 (581)
T TIGR00475 136 IFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIK-------------------RIQKPLRMAIDRAFKVKGAGTVVTG 196 (581)
T ss_pred CCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCc-------------------CcCCCcEEEEEEEEecCCcEEEEEE
Confidence 000125788999999999999999998776443210 1368999999999999999999999
Q ss_pred EEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--CccccceecCCC
Q 008294 410 RVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETLCDAD 474 (571)
Q Consensus 410 rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl~~~~ 474 (571)
+|.+|+++.||.|...+.+...+|++|... ..++++|.|||.++| .|++ ++..|.+++++.
T Consensus 197 ~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~----~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~ 261 (581)
T TIGR00475 197 TAFSGEVKVGDNLRLLPINHEVRVKAIQAQ----NQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPE 261 (581)
T ss_pred EEecceEecCCEEEECCCCceEEEeEEEEC----CccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCC
Confidence 999999999999999998888899999754 278999999999999 4554 377897776543
No 55
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.97 E-value=2.1e-31 Score=253.82 Aligned_cols=145 Identities=37% Similarity=0.491 Sum_probs=128.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe--ecCeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY--WNKHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~--~~~~~i~liDTPG~ 165 (571)
++++||+++||+|+|||||+++|++..+.....+....+.+..+..+.|+++|+|+......+. +.++.++|||||||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 4689999999999999999999998888766554433334568899999999999999999999 99999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHH
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIV 232 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~ 232 (571)
.+|..++.++++.+|++|+|||+.+|+..++.+++..+...++|+++|+||+|+...++.+.+++++
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~ 147 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIK 147 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHH
T ss_pred cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998655555555554
No 56
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.5e-29 Score=258.42 Aligned_cols=303 Identities=24% Similarity=0.342 Sum_probs=241.4
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~ 165 (571)
..+.+.|-|+||+++|||||+++|....-+ .++ ..|||...+.+.... .+..++|+|||||
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VA---A~E---------------~GGITQhIGAF~V~~p~G~~iTFLDTPGH 211 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVA---AGE---------------AGGITQHIGAFTVTLPSGKSITFLDTPGH 211 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCcee---hhh---------------cCCccceeceEEEecCCCCEEEEecCCcH
Confidence 457889999999999999999999622211 111 147888877776654 6789999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
.-|.....++...+|.+++||.+.+|+.+||.+.+..++..++|+++++||||+++++++++.+++... |.
T Consensus 212 aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~-gi-------- 282 (683)
T KOG1145|consen 212 AAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ-GI-------- 282 (683)
T ss_pred HHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc-Cc--------
Confidence 999999999999999999999999999999999999999999999999999999999988877776531 10
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
..|.
T Consensus 283 ------------------------------------------------------------~~E~---------------- 286 (683)
T KOG1145|consen 283 ------------------------------------------------------------VVED---------------- 286 (683)
T ss_pred ------------------------------------------------------------cHHH----------------
Confidence 0011
Q ss_pred HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCce
Q 008294 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~ 405 (571)
.|.-++++.+||++|.|++.|.+++.-.. +..+++++|++|+.+.|.....|+++|.
T Consensus 287 -----~GGdVQvipiSAl~g~nl~~L~eaill~A------------------e~mdLkA~p~g~~eg~VIES~vdkg~G~ 343 (683)
T KOG1145|consen 287 -----LGGDVQVIPISALTGENLDLLEEAILLLA------------------EVMDLKADPKGPAEGWVIESSVDKGRGP 343 (683)
T ss_pred -----cCCceeEEEeecccCCChHHHHHHHHHHH------------------HHhhcccCCCCCceEEEEEeeecCCccc
Confidence 13346788889999999999999987542 2234566789999999999999999999
Q ss_pred EEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCc-cccceecCCCCcc-------
Q 008294 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHPI------- 477 (571)
Q Consensus 406 i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~Gdtl~~~~~~~------- 477 (571)
++.+-|-.|||++|+.|..... -.||+.++-..| +++++|.||.-+-|.|++++ ..||-+...+...
T Consensus 344 ~aT~iVkrGTLkKG~vlV~G~~--w~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~vleVeSe~~Ar~~~~ 418 (683)
T KOG1145|consen 344 VATVIVKRGTLKKGSVLVAGKS--WCKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDEVLEVESEDRARKVLS 418 (683)
T ss_pred eeEEEEeccccccccEEEEech--hhhhhhhhhcCC---CCccccCCCCceEeecccCCCCCCceEEEEecHHHHHHHHH
Confidence 9999999999999999876543 346777776666 88999999999999999996 4688773211000
Q ss_pred --------------------------------ccc--------CCCC--CCceEEEEEEeCCCCCHHHHHHHHHHHHhhC
Q 008294 478 --------------------------------LLE--------RMDF--PDPVIKVAIEPKTKADIDKMANGLIKLAQED 515 (571)
Q Consensus 478 --------------------------------~l~--------~~~~--~~Pv~~~avep~~~~d~~kl~~~L~kl~~eD 515 (571)
... .++. ..|.+.+-|....++..+.++++|+-|..+-
T Consensus 419 ~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK~DV~GS~EAv~d~L~tl~~~~ 498 (683)
T KOG1145|consen 419 KRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIKCDVQGSAEAVLDALSTLNSEQ 498 (683)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEEecccchHHHHHHHHhhcCCCc
Confidence 000 1222 2589999999999999999999999988665
Q ss_pred CeeEE
Q 008294 516 PSFHF 520 (571)
Q Consensus 516 psl~~ 520 (571)
-.+++
T Consensus 499 v~l~~ 503 (683)
T KOG1145|consen 499 VKLNV 503 (683)
T ss_pred eEEEE
Confidence 55555
No 57
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.6e-29 Score=258.59 Aligned_cols=301 Identities=25% Similarity=0.341 Sum_probs=232.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec---CeEEEEEcCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGH 165 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~i~liDTPG~ 165 (571)
+.+.|+++||++||||||++.+-..+-+. ++ .-|+|.+.....+.++ ...|+|||||||
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~---~E---------------aGGITQhIGA~~v~~~~~~~~~itFiDTPGH 65 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAA---GE---------------AGGITQHIGAYQVPLDVIKIPGITFIDTPGH 65 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcccc---cc---------------CCceeeEeeeEEEEeccCCCceEEEEcCCcH
Confidence 56789999999999999999995221111 11 2478999999988874 479999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
+-|+....++...+|.+|||||+.+|+.+||.+.+..++..++|+++++||||++.+++..+..++++. |..
T Consensus 66 eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~-gl~------- 137 (509)
T COG0532 66 EAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY-GLV------- 137 (509)
T ss_pred HHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc-CCC-------
Confidence 999999999999999999999999999999999999999999999999999999999888877777652 110
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
.++
T Consensus 138 ------------------------------------------------------------------------~E~----- 140 (509)
T COG0532 138 ------------------------------------------------------------------------PEE----- 140 (509)
T ss_pred ------------------------------------------------------------------------Hhh-----
Confidence 000
Q ss_pred HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCce
Q 008294 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~ 405 (571)
.+..+.++.+||++|.|+++||++|.-.. +..+.+++++++..+.|.....+++.|.
T Consensus 141 -----~gg~v~~VpvSA~tg~Gi~eLL~~ill~a------------------ev~elka~~~~~a~gtviE~~~dkG~G~ 197 (509)
T COG0532 141 -----WGGDVIFVPVSAKTGEGIDELLELILLLA------------------EVLELKANPEGPARGTVIEVKLDKGLGP 197 (509)
T ss_pred -----cCCceEEEEeeccCCCCHHHHHHHHHHHH------------------HHHhhhcCCCCcceEEEEEEEeccCCCc
Confidence 12225677889999999999999997542 1224566789999999999999999999
Q ss_pred EEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCcc-ccceecCCCCc--------
Q 008294 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTI-TGETLCDADHP-------- 476 (571)
Q Consensus 406 i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~-~Gdtl~~~~~~-------- 476 (571)
++..-|+.|||+.||.|....... +|..++ .....+++.+.++--+.+.|++++. .||......+.
T Consensus 198 vatviv~~GtL~~GD~iv~g~~~g--~I~t~v---~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~ 272 (509)
T COG0532 198 VATVIVQDGTLKKGDIIVAGGEYG--RVRTMV---DDLGKPIKEAGPSKPVEILGLSEVPAAGDVFIVVKDEKKARAIAE 272 (509)
T ss_pred eEEEEEecCeEecCCEEEEccCCC--ceEEee---hhcCCCccccCCCCCeEEeccccccccCceEEecCChHHHhhhhh
Confidence 999999999999999998765432 344444 3444778888888777788877753 45555321110
Q ss_pred c--------------------cccCCCCCCce--EEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEE
Q 008294 477 I--------------------LLERMDFPDPV--IKVAIEPKTKADIDKMANGLIKLAQEDPSFHF 520 (571)
Q Consensus 477 ~--------------------~l~~~~~~~Pv--~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~ 520 (571)
. .+..+....+. +.+-+.+..++.++.|..+|+++.-..-.+++
T Consensus 273 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~viiKaDt~GSlEAL~~~L~~~~~~~v~~~i 338 (509)
T COG0532 273 LRVVLLREAELASKKKGELEELIAEIKIRGELKELNVILKADTQGSLEALKGSLKKLGVDEVKVRI 338 (509)
T ss_pred HhhhhhhhhhhhhHHHHHHHHHHHhhhccCCcceecEEEEEcccchHHHHHHHHHhcCCCceEEEE
Confidence 0 01222222334 89999999999999999999998776655444
No 58
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.2e-29 Score=255.66 Aligned_cols=249 Identities=24% Similarity=0.349 Sum_probs=210.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
.|+..||.++|||||+.++. | ...|..++|++||+|++....++..+++.+.|||.|||.+|...
T Consensus 2 ii~t~GhidHgkT~L~~alt---g------------~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~ 66 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT---G------------GVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISN 66 (447)
T ss_pred eEEEeeeeeccchhhhhhhc---c------------cccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHH
Confidence 58899999999999999994 2 34578899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccccc-hhhhHHHHHHHhCCcceeeeccCCCC
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGAE 249 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~~ 249 (571)
+..++...|.+++|||+.+|++.||.+++..+...+++. ++|+||+|+.+.. .++..++|...+
T Consensus 67 miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l-------------- 132 (447)
T COG3276 67 LLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADL-------------- 132 (447)
T ss_pred HHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhc--------------
Confidence 999999999999999999999999999999999999998 8899999987532 222222221110
Q ss_pred CCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhc
Q 008294 250 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 329 (571)
Q Consensus 250 ~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~ 329 (571)
.
T Consensus 133 ----------------------------------------------------------------------------~--- 133 (447)
T COG3276 133 ----------------------------------------------------------------------------S--- 133 (447)
T ss_pred ----------------------------------------------------------------------------c---
Confidence 0
Q ss_pred ccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEE
Q 008294 330 IAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFV 409 (571)
Q Consensus 330 ~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~ 409 (571)
-.-.|+|..|+++|.||++|-+.|.+..- +.+ -+.++||+.+|...|..+++|++..|
T Consensus 134 --l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~-~~e-------------------~d~~~~fri~IDraFtVKGvGTVVtG 191 (447)
T COG3276 134 --LANAKIFKTSAKTGRGIEELKNELIDLLE-EIE-------------------RDEQKPFRIAIDRAFTVKGVGTVVTG 191 (447)
T ss_pred --cccccccccccccCCCHHHHHHHHHHhhh-hhh-------------------hccCCceEEEEeeEEEeccccEEEEe
Confidence 01236788899999999999999988764 211 13589999999999999999999999
Q ss_pred EEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--CccccceecCCC
Q 008294 410 RVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETLCDAD 474 (571)
Q Consensus 410 rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl~~~~ 474 (571)
.++||+++.||+++..+.|+..+|++|.... .++++|.||+.|++ .|.+ ++..|+.|..++
T Consensus 192 tv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d----~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 192 TVLSGEVKVGDKLYLSPINKEVRVRSIQAHD----VDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred EEeeeeEEECCEEEEecCCCeEEEEeeeecC----cchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 9999999999999999999999999887544 88999999999998 4442 367899998765
No 59
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.4e-28 Score=256.09 Aligned_cols=279 Identities=23% Similarity=0.302 Sum_probs=215.7
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCccee------------eee-ecCcccccchhhhhhhceeEeeceEEEe
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTY 151 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~------------g~~-~~g~~~~d~~~~e~~~g~t~~~~~~~~~ 151 (571)
...+...+++++||+++|||||+.+|+|..|.+... |.- ....+++|...+|++||+|+......++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 445568899999999999999999999999876541 211 3445789999999999999999999999
Q ss_pred ecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCCeE-EEEecCCccccc
Q 008294 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPRI-CFVNKMDRLGAN 223 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~ 223 (571)
...+.++|+|+|||.||..+++.+...||.+|||||++.| ...||++|...++..|+..+ |++||||..+++
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWS 331 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCcc
Confidence 9999999999999999999999999999999999999843 46799999999999999865 569999999876
Q ss_pred hhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcC
Q 008294 224 FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELD 303 (571)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~ 303 (571)
.++ +++|+..++.
T Consensus 332 q~R-F~eIk~~l~~------------------------------------------------------------------ 344 (603)
T KOG0458|consen 332 QDR-FEEIKNKLSS------------------------------------------------------------------ 344 (603)
T ss_pred HHH-HHHHHHHHHH------------------------------------------------------------------
Confidence 443 3334333321
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhccc--CcceeeeeccccCCCChH---------------HHHHHHHHhCCCCCCCC
Q 008294 304 DEAMESYLEGNEPDEETIKKLIRKGTIA--GSFVPVLCGSAFKNKGVQ---------------PLLDAVVDYLPSPLDLP 366 (571)
Q Consensus 304 ~~l~e~~l~~~~~~~~~l~~~l~~~~~~--~~~~Pv~~~Sa~~~~Gv~---------------~Lld~i~~~lP~p~~~~ 366 (571)
||. + ..++.+ -.|+|+ |++.|.|+- .||+.|.. +-.|..
T Consensus 345 ------fL~----------~--~~gf~es~v~FIPi---SGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~-- 400 (603)
T KOG0458|consen 345 ------FLK----------E--SCGFKESSVKFIPI---SGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPER-- 400 (603)
T ss_pred ------HHH----------H--hcCcccCCcceEec---ccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCC--
Confidence 000 0 000001 134454 777777653 46777766 433432
Q ss_pred CCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceee
Q 008294 367 AMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRED 446 (571)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~ 446 (571)
.-+.||++.|..++..+..|...+|||.+|.+.+||+||+.+......|+.|..- -.+
T Consensus 401 ------------------~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~----~~~ 458 (603)
T KOG0458|consen 401 ------------------PIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSN----DEP 458 (603)
T ss_pred ------------------cccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecC----CCc
Confidence 1356999999999999999999999999999999999999988877778877533 378
Q ss_pred cCeecCCCEEEE--eCCC--Cccccceec-CCCCc
Q 008294 447 VKVALAGDIIAL--AGLK--DTITGETLC-DADHP 476 (571)
Q Consensus 447 v~~a~aGdiv~i--~gl~--~~~~Gdtl~-~~~~~ 476 (571)
...|.|||.|.+ .++. .+..||++| .+..+
T Consensus 459 ~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~~~~~~~ 493 (603)
T KOG0458|consen 459 KTWAVAGDNVSLKLPGILPNLVQVGDIADSGPQFP 493 (603)
T ss_pred ceeEeeCCEEEEecCccChhhcccceeeecCCCcc
Confidence 899999999988 4543 377899999 44433
No 60
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.96 E-value=3.1e-28 Score=267.10 Aligned_cols=344 Identities=20% Similarity=0.252 Sum_probs=220.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeee--ecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~--~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
.|.+.|+++||+|||||||+++|..........|.+ ..|.+..+....+...|.+.......+.+ ..++|||||||
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~iDTPG~ 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKI--PGLLFIDTPGH 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceecccccccccc--CCEEEEECCCh
Confidence 356789999999999999999996332222222211 11222222211111122211110011111 13799999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc-cchhhhHHHHHHHhCCcceeeec
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~-~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
.+|...+.++++.+|++++|+|+.+|+..++.+++..+...++|+++|+||+|+.. ..... +.
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~---------~~------- 145 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTE---------DA------- 145 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhc---------Cc-------
Confidence 99999999999999999999999999999999999999999999999999999852 11000 00
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
.+-+.....-....+.+-+.+.+ +..+|.+..+..+.+..
T Consensus 146 ----------------------------------~~~e~~~~~~~~v~~~f~~~l~e-----v~~~L~~~g~~~e~~~~- 185 (586)
T PRK04004 146 ----------------------------------PFLESIEKQSQRVQQELEEKLYE-----LIGQLSELGFSADRFDR- 185 (586)
T ss_pred ----------------------------------hHHHHHhhhhHHHHHHHHHHHHH-----HHHHHHhcCCChhhhhh-
Confidence 00000000000001111111100 11233333344333222
Q ss_pred HHhhcccCcceeeeeccccCCCChHHHHHHHHH----hCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeec
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVD----YLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSD 400 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~----~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d 400 (571)
++. .+..+|++.+||++|.|+++|++.+.. ++|.+.. .+++.|+.+.|++++.+
T Consensus 186 ~~~---~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~-------------------~~~~~~~~~~V~ev~~~ 243 (586)
T PRK04004 186 VKD---FTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLK-------------------IDVEGPGKGTVLEVKEE 243 (586)
T ss_pred hhc---cCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhc-------------------cCCCCCeEEEEEEEEEe
Confidence 111 234578889999999999999998864 2333332 23578999999999999
Q ss_pred CCCceEEEEEEecceeCCCCEEEeCCCCc--eeecceEEEec--------cCceeecCeecCCCEEEE--eCCCCccccc
Q 008294 401 PFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMH--------ANSREDVKVALAGDIIAL--AGLKDTITGE 468 (571)
Q Consensus 401 ~~~G~i~~~rV~sG~l~~gd~v~~~~~~~--~~~i~~i~~~~--------g~~~~~v~~a~aGdiv~i--~gl~~~~~Gd 468 (571)
++.|.+++++|++|+|++||.|...+.+. ..+|+.|+... +.....+++|.|..-+-| .|++++..|+
T Consensus 244 ~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~g~ 323 (586)
T PRK04004 244 RGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALAGS 323 (586)
T ss_pred CCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCCCC
Confidence 99999999999999999999999877653 35788887652 123467778777766655 4998888898
Q ss_pred eecCCCCcc----------cccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHH
Q 008294 469 TLCDADHPI----------LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKL 511 (571)
Q Consensus 469 tl~~~~~~~----------~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl 511 (571)
.+.-..+.- .+....+....+.+.|.+...+..+.+.++|+++
T Consensus 324 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivkad~~Gs~EAi~~~l~~~ 376 (586)
T PRK04004 324 PLRVVRDEDVEEVKEEVEEEIEEIRIETDEEGVVVKADTLGSLEALVNELREE 376 (586)
T ss_pred eEEEeCcHHHHHHHHHHHHHHHhccccccccCEEEEeCCccHHHHHHHHHHhC
Confidence 875332110 0111222345678889999999999999999875
No 61
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.96 E-value=6.3e-28 Score=238.42 Aligned_cols=289 Identities=24% Similarity=0.311 Sum_probs=222.1
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCc----ccccchhhhhhhceeEeeceEEEeec---------
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATTTYWN--------- 153 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~----~~~d~~~~e~~~g~t~~~~~~~~~~~--------- 153 (571)
.....+++..||+|+|||||+.+|. .|..++|. .+.|..++|.++|.|...+..-+-++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~Lv--------tG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlkn 185 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLV--------TGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKN 185 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEE--------ecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecC
Confidence 3456789999999999999999996 34455543 67889999999999988776665541
Q ss_pred --------------CeEEEEEcCCCCCCcHHHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecC
Q 008294 154 --------------KHRINIIDTPGHVDFTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (571)
Q Consensus 154 --------------~~~i~liDTPG~~~f~~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~ 217 (571)
+..+.|+||-||+.|...+++++- ..|..+++|.|.+|++..|++|+..+...++|+|+|++|+
T Consensus 186 Pld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~ 265 (527)
T COG5258 186 PLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKI 265 (527)
T ss_pred cccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEec
Confidence 356899999999999999999985 5699999999999999999999999999999999999999
Q ss_pred Cccc-cchhhhHHHHHHHhCC-cceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHH
Q 008294 218 DRLG-ANFFRTRDMIVTNLGA-KPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQM 295 (571)
Q Consensus 218 D~~~-~~~~~~~~~i~~~l~~-~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l 295 (571)
|+.. .++..+.++|...|.. .-+|+.+ .
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~v--k------------------------------------------------ 295 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLIV--K------------------------------------------------ 295 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccceee--e------------------------------------------------
Confidence 9965 4477777777766543 0111110 0
Q ss_pred HHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccC-cceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 008294 296 IETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAG-SFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPE 374 (571)
Q Consensus 296 ~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~-~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~ 374 (571)
+.+ +...+. .+...+ .++|+|.+|+.+|.|++ +|+.+..++|.-..
T Consensus 296 -----~~~----------------d~v~aa-~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~rr~---------- 342 (527)
T COG5258 296 -----DTD----------------DVVLAA-KAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKRRR---------- 342 (527)
T ss_pred -----ccc----------------hhHHhh-hhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCcccc----------
Confidence 000 111111 122233 48899999999999998 67777777875531
Q ss_pred CccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCC----ceeecceEEEeccCceeecCee
Q 008294 375 NPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG----KKERIGRLLEMHANSREDVKVA 450 (571)
Q Consensus 375 ~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~----~~~~i~~i~~~~g~~~~~v~~a 450 (571)
-+..+||.+||.|+++..++|.++.|.|-+|.|+.||.|+..+.. ...+|++|.+- +..|++|
T Consensus 343 ---------~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh----~~rvdsa 409 (527)
T COG5258 343 ---------WDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMH----HYRVDSA 409 (527)
T ss_pred ---------cCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEe----eEEeccc
Confidence 124789999999999999999999999999999999999986642 34567777543 3789999
Q ss_pred cCCCEEEE--eCCCC--ccccceecCCCCcccc
Q 008294 451 LAGDIIAL--AGLKD--TITGETLCDADHPILL 479 (571)
Q Consensus 451 ~aGdiv~i--~gl~~--~~~Gdtl~~~~~~~~l 479 (571)
.||+|+.+ .|+.. +..|.+|+....|-.+
T Consensus 410 ~aG~iig~Al~gv~~e~lerGMVl~~~~~pkaV 442 (527)
T COG5258 410 KAGSIIGIALKGVEKEELERGMVLSAGADPKAV 442 (527)
T ss_pred cCCcEEEEEecccCHHHHhcceEecCCCCchhh
Confidence 99999877 56654 7899999876445433
No 62
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.3e-28 Score=239.90 Aligned_cols=315 Identities=24% Similarity=0.274 Sum_probs=215.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcce---------------eeeeecCcccccchhhhhhhceeEeeceEEEee
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK---------------IGEVHEGTATMDWMEQEQERGITITSAATTTYW 152 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~---------------~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~ 152 (571)
+...++..+|+++-|||||+.+|||.+..+.. .|+..+-....|-.+.|++.||||+..+..|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 44678999999999999999999988765432 112122234567788999999999999999999
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEE-EEecCCccccchhhhHHHH
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGANFFRTRDMI 231 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iv-viNK~D~~~~~~~~~~~~i 231 (571)
..+++.+.|||||+.|...|..+..-||++|++|||..|+..||++|.-.+...++++++ .+||||+.+.+. +.+++|
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e-~~F~~I 162 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSE-EVFEAI 162 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCH-HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999875 599999987542 223333
Q ss_pred HHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHh
Q 008294 232 VTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYL 311 (571)
Q Consensus 232 ~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l 311 (571)
...+. .+.+
T Consensus 163 ~~dy~--------------------------------------------------------------------~fa~--- 171 (431)
T COG2895 163 VADYL--------------------------------------------------------------------AFAA--- 171 (431)
T ss_pred HHHHH--------------------------------------------------------------------HHHH---
Confidence 22110 0000
Q ss_pred cCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccc-ccCCCCCCe
Q 008294 312 EGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLE-RAASDDEPF 390 (571)
Q Consensus 312 ~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ 390 (571)
........++| .||+.|.+|-. + ....++|.|...-.-.+..+ .......||
T Consensus 172 --------------~L~~~~~~~IP---iSAl~GDNV~~---------~-s~~mpWY~GptLLe~LE~v~i~~~~~~~~~ 224 (431)
T COG2895 172 --------------QLGLKDVRFIP---ISALLGDNVVS---------K-SENMPWYKGPTLLEILETVEIADDRSAKAF 224 (431)
T ss_pred --------------HcCCCcceEEe---chhccCCcccc---------c-ccCCCcccCccHHHHHhhccccccccccce
Confidence 00111122344 48888877641 1 11122333221000000000 011234567
Q ss_pred EEEEEEEeecCCCceE-EEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCC--cccc
Q 008294 391 AGLAFKIMSDPFVGSL-TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD--TITG 467 (571)
Q Consensus 391 ~~~V~k~~~d~~~G~i-~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~--~~~G 467 (571)
+..|-.+. .|+..+- -.|+|-+|++++||.|...+.|+..+|++|..+.| ++++|.||+-|.+.=-++ +..|
T Consensus 225 RfPVQ~V~-Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg----~~~~A~aG~aVtl~L~deidisRG 299 (431)
T COG2895 225 RFPVQYVN-RPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDG----ELAQASAGEAVTLVLADEIDISRG 299 (431)
T ss_pred eeceEEec-CCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCC----chhhccCCceEEEEEcceeecccC
Confidence 66665544 2222222 24789999999999999999999999999998874 578999999999973333 6789
Q ss_pred ceecCCCCcccccCCCCCCceEEEEEEeCCCCCHHHHHHH
Q 008294 468 ETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANG 507 (571)
Q Consensus 468 dtl~~~~~~~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~ 507 (571)
|.|+..+.+... .-.|..-++.+.-+|..++.--+|.-+
T Consensus 300 d~i~~~~~~~~~-~~~f~A~vvWm~~~pl~pGr~Y~lK~~ 338 (431)
T COG2895 300 DLIVAADAPPAV-ADAFDADVVWMDEEPLLPGRSYDLKIA 338 (431)
T ss_pred cEEEccCCCcch-hhhcceeEEEecCCCCCCCceEEEEec
Confidence 999988766541 223444566666666655543333333
No 63
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.96 E-value=1.2e-27 Score=232.25 Aligned_cols=129 Identities=48% Similarity=0.632 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec----------CeEEEEE
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------KHRINII 160 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~----------~~~i~li 160 (571)
|||+++||+++|||||+++|++.+|.+.... ...++++|+.+.|++||+|+.....++.|. ++.++||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~--~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~ii 78 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL--AGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLI 78 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc--CCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEE
Confidence 6999999999999999999999888665432 123478999999999999999998887775 7889999
Q ss_pred cCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 161 DTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 161 DTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
|||||.+|..++..+++.+|++++|||+.+|+..+++.+++.+...++|+++|+||+|+..
T Consensus 79 DTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~ 139 (222)
T cd01885 79 DSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLI 139 (222)
T ss_pred CCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcch
Confidence 9999999999999999999999999999999999999999999999999999999999864
No 64
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.95 E-value=1.3e-26 Score=253.14 Aligned_cols=330 Identities=21% Similarity=0.272 Sum_probs=215.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------------- 152 (571)
+.+.|+++||+|||||||+|+|..........| |+|.+.....+.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~g------------------giTq~iG~~~v~~~~~~~~~~~~~~~~~v 64 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAG------------------GITQHIGATEIPMDVIEGICGDLLKKFKI 64 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCC------------------ceecccCeeEeeecccccccccccccccc
Confidence 457899999999999999999974322111111 2232222222111
Q ss_pred --cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHH
Q 008294 153 --NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM 230 (571)
Q Consensus 153 --~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 230 (571)
....++|||||||.+|...+.++++.+|++++|+|+.+|+..++.+++..++..++|+++|+||+|+....
T Consensus 65 ~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~------- 137 (590)
T TIGR00491 65 RLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGW------- 137 (590)
T ss_pred ccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchh-------
Confidence 11248999999999999999999999999999999999999999999999999999999999999986310
Q ss_pred HHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeee--ecccHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q 008294 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAY--EDIPANLQKMAQEYRSQMIETIVELDDEAME 308 (571)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e 308 (571)
....+ ..|.. ............+....++..+.
T Consensus 138 -~~~~~------------------------------------~~f~e~sak~~~~v~~~~~~~~~~lv~~l~-------- 172 (590)
T TIGR00491 138 -RSHEG------------------------------------RPFMESFSKQEIQVQQNLDTKVYNLVIKLH-------- 172 (590)
T ss_pred -hhccC------------------------------------chHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------
Confidence 00000 00000 00000000011111111111111
Q ss_pred HHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCC
Q 008294 309 SYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDE 388 (571)
Q Consensus 309 ~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (571)
...+..+.+. .+. ..+..+|++.+||++|.|+++|+++|....-.-.. .....++++
T Consensus 173 ----~~G~~~e~~~-~i~---~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~---------------~~l~~~~~~ 229 (590)
T TIGR00491 173 ----EEGFEAERFD-RVT---DFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLE---------------EQLKLEEEG 229 (590)
T ss_pred ----hcCccHHhhh-hhh---hcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhh---------------hhhccCCCC
Confidence 1112221111 111 12445789999999999999999998654211000 001224578
Q ss_pred CeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCc--eeecceEEEecc--------CceeecCeec--CCCEE
Q 008294 389 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHA--------NSREDVKVAL--AGDII 456 (571)
Q Consensus 389 p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~--~~~i~~i~~~~g--------~~~~~v~~a~--aGdiv 456 (571)
|+.+.|...+.+++.|.++.++|.+|+|++||.|...+.+. ..+|+.|+...+ .+...++++. +|--+
T Consensus 230 ~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v 309 (590)
T TIGR00491 230 PARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKI 309 (590)
T ss_pred CeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeE
Confidence 99999999999999999999999999999999999887653 467888876653 1234566755 45556
Q ss_pred EEeCCCCccccceecCCCCcc----------cccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHH
Q 008294 457 ALAGLKDTITGETLCDADHPI----------LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKL 511 (571)
Q Consensus 457 ~i~gl~~~~~Gdtl~~~~~~~----------~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl 511 (571)
.+.|++++..|+.+.-..+.- ....+.+...-+.+-|.+...+.++.|.++|+++
T Consensus 310 ~~~~l~~~~aG~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~vivkad~~Gs~EAl~~~l~~~ 374 (590)
T TIGR00491 310 AAPGLDDVMAGSPIRVVTDEEIEKVKEEILKEVEEIKIDTDEEGVVVKADTLGSLEALVNELRDM 374 (590)
T ss_pred EecCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhhcccccccccEEEEecCcchHHHHHHHHHhC
Confidence 668998888898874322110 0112223355688999999999999999999986
No 65
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=8.5e-27 Score=225.99 Aligned_cols=305 Identities=22% Similarity=0.335 Sum_probs=219.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------------- 152 (571)
.-.||+++||+++|||||+.+|. | -+.|.+.+|-+||+|+...+.....
T Consensus 9 p~vNIG~vGHVdHGKtTlv~Als---G------------vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~ 73 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALS---G------------VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEP 73 (415)
T ss_pred cceEeeeeeecccchhhheehhh---c------------eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCC
Confidence 35799999999999999999994 2 3568899999999999988765332
Q ss_pred ----------cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-CchhHHHHHHHHHhcCCCeE-EEEecCCcc
Q 008294 153 ----------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGVPRI-CFVNKMDRL 220 (571)
Q Consensus 153 ----------~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~~~p~i-vviNK~D~~ 220 (571)
--+++.|+|+|||+-....+.++....|++++||+|++. .++||++|+..+.-.++..+ +|-||+|+.
T Consensus 74 ~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV 153 (415)
T COG5257 74 KCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLV 153 (415)
T ss_pred CCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEeccccee
Confidence 014689999999999999999999999999999999965 58999999999998888765 567999997
Q ss_pred ccc-hhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHH
Q 008294 221 GAN-FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETI 299 (571)
Q Consensus 221 ~~~-~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ 299 (571)
..+ ..+-+++|++
T Consensus 154 ~~E~AlE~y~qIk~------------------------------------------------------------------ 167 (415)
T COG5257 154 SRERALENYEQIKE------------------------------------------------------------------ 167 (415)
T ss_pred cHHHHHHHHHHHHH------------------------------------------------------------------
Confidence 643 1222233322
Q ss_pred hhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccc
Q 008294 300 VELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEAT 379 (571)
Q Consensus 300 ~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~ 379 (571)
|++| .+++ -.|++.+||.++.+++.|+++|.+++|.|..
T Consensus 168 ----------FvkG--------------t~Ae--~aPIIPiSA~~~~NIDal~e~i~~~IptP~r--------------- 206 (415)
T COG5257 168 ----------FVKG--------------TVAE--NAPIIPISAQHKANIDALIEAIEKYIPTPER--------------- 206 (415)
T ss_pred ----------Hhcc--------------cccC--CCceeeehhhhccCHHHHHHHHHHhCCCCcc---------------
Confidence 1111 1111 1378888999999999999999999999975
Q ss_pred ccccCCCCCCeEEEEEEEeecC--------CCceEEEEEEecceeCCCCEEEeCCC------Cce---eecceEEEeccC
Q 008294 380 LERAASDDEPFAGLAFKIMSDP--------FVGSLTFVRVYAGTLSAGSYVLNANK------GKK---ERIGRLLEMHAN 442 (571)
Q Consensus 380 ~~~~~~~~~p~~~~V~k~~~d~--------~~G~i~~~rV~sG~l~~gd~v~~~~~------~~~---~~i~~i~~~~g~ 442 (571)
|.+.|..++|.+.|... -.|-+.-|-+.+|.|+.||.+-..+. ++. --...+..++..
T Consensus 207 -----d~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag 281 (415)
T COG5257 207 -----DLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAG 281 (415)
T ss_pred -----CCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeC
Confidence 45789999999998433 23568889999999999999975432 111 013344455543
Q ss_pred ceeecCeecCCCEEEE-eCCCC-ccccceecCC--CCcccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCee
Q 008294 443 SREDVKVALAGDIIAL-AGLKD-TITGETLCDA--DHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSF 518 (571)
Q Consensus 443 ~~~~v~~a~aGdiv~i-~gl~~-~~~Gdtl~~~--~~~~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl 518 (571)
. .++++|.+|-.++| ++||. +.++|-|... +.+- ..|....++.++-. -|.++.-.+-.+
T Consensus 282 ~-~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~G~pG-----~lPpv~~~~~ie~~----------LL~RvvG~~~e~ 345 (415)
T COG5257 282 G-EDVEEARPGGLVGVGTKLDPTLTKADALVGQVVGKPG-----TLPPVWTSIRIEYH----------LLERVVGTKEEL 345 (415)
T ss_pred C-eeeeeccCCceEEEecccCcchhhhhhhccccccCCC-----CCCCceEEEEEEee----------ehhhhhCccccc
Confidence 3 78999999999999 78886 4457766543 2222 22333444445432 244555555556
Q ss_pred EEEEeCCCCeEEEEEecHH
Q 008294 519 HFSRDEEINQTVIEGMGEL 537 (571)
Q Consensus 519 ~~~~~~etge~il~g~Gel 537 (571)
+++- -.++|.++...|..
T Consensus 346 kvep-ik~~E~Lml~VGta 363 (415)
T COG5257 346 KVEP-IKTNEVLMLNVGTA 363 (415)
T ss_pred cccc-ccCCCeEEEEeecc
Confidence 6654 35788888776653
No 66
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.95 E-value=6.4e-27 Score=223.26 Aligned_cols=128 Identities=30% Similarity=0.444 Sum_probs=114.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee-cCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~-~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
..||+++||+|+|||||+++|++... ..|... .+...+|+.++|+++|+|++.....+.+++.+++|+|||||.+|
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~---~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~ 78 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLA---KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 78 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH---hcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH
Confidence 36899999999999999999996542 222221 23457899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCcc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRL 220 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~ 220 (571)
..++..++..+|++++|||+.+|+..++++++..+...++| +++|+||+|+.
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 99999999999999999999999999999999999999998 66889999985
No 67
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=1.4e-24 Score=204.72 Aligned_cols=129 Identities=40% Similarity=0.569 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-----cCeEEEEEcCCCC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-----NKHRINIIDTPGH 165 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-----~~~~i~liDTPG~ 165 (571)
|||+++|++|+|||||+++|+...|.+...+. ...+.++.+.++.+|+|+......+.+ .+..++||||||+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 77 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREM---KEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGH 77 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCC---ceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCC
Confidence 69999999999999999999987665443221 135677888899999999887776644 4678999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.+|...+..+++.+|++|+|+|+.++...++...|..+...++|+++|+||+|+...
T Consensus 78 ~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 78 VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSA 134 (179)
T ss_pred hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcC
Confidence 999999999999999999999999988888888887777789999999999998653
No 68
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=6.1e-25 Score=214.37 Aligned_cols=247 Identities=22% Similarity=0.274 Sum_probs=200.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee---------cCeEEEEE
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------NKHRINII 160 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------~~~~i~li 160 (571)
..|++++||+++|||||..+|... + .+...|.++...+||+|.+.....+.. ...+++++
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~-------~----STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlv 75 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSEL-------G----STAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLV 75 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhh-------c----cchhhccCCcccccceeEeecceeeecccccccCccccceeEEE
Confidence 379999999999999999999521 1 245678888899999999999887765 34567999
Q ss_pred cCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchh-hhHHHHHHHhCCcc
Q 008294 161 DTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFF-RTRDMIVTNLGAKP 239 (571)
Q Consensus 161 DTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~-~~~~~i~~~l~~~~ 239 (571)
|+|||......++.+....|..++|||+..|.+.|+-+++-.........++|+||+|....+.. ..++....
T Consensus 76 DCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~k------ 149 (522)
T KOG0461|consen 76 DCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAK------ 149 (522)
T ss_pred eCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHH------
Confidence 99999999999999999999999999999999999999998888888889999999997543211 11111111
Q ss_pred eeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHH
Q 008294 240 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEE 319 (571)
Q Consensus 240 ~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~ 319 (571)
T Consensus 150 -------------------------------------------------------------------------------- 149 (522)
T KOG0461|consen 150 -------------------------------------------------------------------------------- 149 (522)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcccCcceeeeeccccCC----CChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEE
Q 008294 320 TIKKLIRKGTIAGSFVPVLCGSAFKN----KGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAF 395 (571)
Q Consensus 320 ~l~~~l~~~~~~~~~~Pv~~~Sa~~~----~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 395 (571)
.+.+.|... ..+.-.|++.+||..| .++++|.+.|...+-.|.. |+.+||.+.|.
T Consensus 150 k~~KtLe~t-~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R--------------------d~~gpflm~vD 208 (522)
T KOG0461|consen 150 KVRKTLEST-GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR--------------------DEEGPFLMAVD 208 (522)
T ss_pred HHHHHHHhc-CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc--------------------CCCCCeEEEee
Confidence 111222211 1233468999999999 8999999999888766654 46899999999
Q ss_pred EEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE
Q 008294 396 KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL 458 (571)
Q Consensus 396 k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i 458 (571)
.-+..++.|++..|.|++|.++.|+.|-.+.-+...||+.+.+++ .+|.+|.+||.+++
T Consensus 209 HCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~----~~vtsa~~GdR~g~ 267 (522)
T KOG0461|consen 209 HCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFK----QRVTSAAAGDRAGF 267 (522)
T ss_pred eeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHHh----hhhhhhhcccceee
Confidence 999999999999999999999999999988877777888887766 78999999999887
No 69
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.93 E-value=4.7e-25 Score=215.11 Aligned_cols=130 Identities=32% Similarity=0.403 Sum_probs=114.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceee--eee-----cCc------ccccchhhhhhhceeEeeceEEEeecCeEEE
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIG--EVH-----EGT------ATMDWMEQEQERGITITSAATTTYWNKHRIN 158 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g--~~~-----~g~------~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~ 158 (571)
||+++||+|+|||||+++|++.+|.+.+.+ .+. .|. +++|+.+.|+++|+|++.....+.++++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 689999999999999999999999876644 211 233 3789999999999999999999999999999
Q ss_pred EEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCC-------CCchhHHHHHHHHHhcC-CCeEEEEecCCccc
Q 008294 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVA-------GVEPQSETVWRQADKYG-VPRICFVNKMDRLG 221 (571)
Q Consensus 159 liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~-------g~~~~~~~~~~~~~~~~-~p~ivviNK~D~~~ 221 (571)
+||||||.+|...+..+++.+|++|+|||+.+ +...++.+++..+...+ .|+++|+||+|+..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 99999999999999999999999999999998 56778888888887777 46778999999874
No 70
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.92 E-value=2e-23 Score=238.12 Aligned_cols=317 Identities=20% Similarity=0.215 Sum_probs=214.5
Q ss_pred hHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC------------------eEEEEEcCCC
Q 008294 103 KTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK------------------HRINIIDTPG 164 (571)
Q Consensus 103 KSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~------------------~~i~liDTPG 164 (571)
||||+++|....- ......|+|++.+...+.+.. ..++||||||
T Consensus 474 KTtLLD~iR~t~v------------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPG 535 (1049)
T PRK14845 474 NTTLLDKIRKTRV------------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPG 535 (1049)
T ss_pred cccHHHHHhCCCc------------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCC
Confidence 9999999952111 122346888888887776542 1389999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc-cchhhhHHHHHHHhCCcceeee
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLGAKPLVVQ 243 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~-~~~~~~~~~i~~~l~~~~~~~~ 243 (571)
|.+|.....+++..+|++++|+|+.+|+..++.+++..+...++|+++|+||+|+.. ++...
T Consensus 536 he~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~----------------- 598 (1049)
T PRK14845 536 HEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISE----------------- 598 (1049)
T ss_pred cHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCcccccccc-----------------
Confidence 999988888888999999999999999999999999999999999999999999853 21000
Q ss_pred ccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHH
Q 008294 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (571)
Q Consensus 244 ~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~ 323 (571)
..++-..+....+...+++-+.+.+.-.++.+ ..+..+ +..
T Consensus 599 ---------------------------------~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~-----~G~~~e-~~~ 639 (1049)
T PRK14845 599 ---------------------------------DEPFLLNFNEQDQHALTELEIKLYELIGKLYE-----LGFDAD-RFD 639 (1049)
T ss_pred ---------------------------------chhhhhhhhhhHHHHHHHHHHHHHHHhhHHHh-----cCcchh-hhh
Confidence 00000111111111111111111110011111 111111 111
Q ss_pred HHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCC
Q 008294 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFV 403 (571)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~ 403 (571)
.+.. .+..+|++.+||++|.|+++|+++|....+.-.+ .....++++|+.+.|..++.+++.
T Consensus 640 ~~~d---~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~---------------~~L~~~~~~~~~g~VlEv~~~kG~ 701 (1049)
T PRK14845 640 RVQD---FTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLE---------------ERLKLNVEGYAKGTILEVKEEKGL 701 (1049)
T ss_pred hhhh---cCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhh---------------hhhccCCCCceEEEEEEEEEecCc
Confidence 1111 2456799999999999999999988754332111 011234578999999999999999
Q ss_pred ceEEEEEEecceeCCCCEEEeCCCCc--eeecceEEEec--------cCceeecCeecCCCEEEE--eCCCCccccceec
Q 008294 404 GSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMH--------ANSREDVKVALAGDIIAL--AGLKDTITGETLC 471 (571)
Q Consensus 404 G~i~~~rV~sG~l~~gd~v~~~~~~~--~~~i~~i~~~~--------g~~~~~v~~a~aGdiv~i--~gl~~~~~Gdtl~ 471 (571)
|.++.+.|++|+|++||.|...+.+. ..+|+.++... +.....+++|.|+.-|-| .|++++..|+.+.
T Consensus 702 G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~~ 781 (1049)
T PRK14845 702 GTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPIR 781 (1049)
T ss_pred eeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeEE
Confidence 99999999999999999999887654 46777776432 223467888888887777 4899999999885
Q ss_pred CCCCcc-----------cccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHH
Q 008294 472 DADHPI-----------LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKL 511 (571)
Q Consensus 472 ~~~~~~-----------~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl 511 (571)
-..+.- .+....+....+.+-|.+...+.++.|..+|+++
T Consensus 782 v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~vivKaDt~GSlEAl~~~L~~~ 832 (1049)
T PRK14845 782 IVPTKEKIEKAKEEVMKEVEEAKIETDKEGILIKADTLGSLEALANELRKA 832 (1049)
T ss_pred EeCCHHHHHHHHHHHHHHHhhhccCcceeeEEEEecccchHHHHHHHHHhC
Confidence 432210 0111223346688999999999999999999986
No 71
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.92 E-value=1e-24 Score=211.03 Aligned_cols=130 Identities=28% Similarity=0.340 Sum_probs=115.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcc--eeeeee-----------cCcccccchhhhhhhceeEeeceEEEeecCeEEE
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNY--KIGEVH-----------EGTATMDWMEQEQERGITITSAATTTYWNKHRIN 158 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~--~~g~~~-----------~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~ 158 (571)
+|+|+||+|+|||||+++|++.+|.+. ..+.++ .+++++|+.+.|+++|+|++.....+.+++..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999999998766 223222 4567899999999999999999999999999999
Q ss_pred EEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccc
Q 008294 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLG 221 (571)
Q Consensus 159 liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~ 221 (571)
|||||||.+|...+..+++.+|++|+|+|+.+++..++..++..+...++| +++|+||+|+..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence 999999999999999999999999999999999999998888888888866 566899999864
No 72
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=4.5e-24 Score=204.35 Aligned_cols=142 Identities=41% Similarity=0.580 Sum_probs=119.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
++|+|+++|++|+|||||+++|++..+.......+ ..+.+++.+.|..+|+|+......+.+++..+++|||||+.+|
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~--~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 78 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEV--EERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF 78 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcc--cccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH
Confidence 37899999999999999999999765554433221 2356788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHH
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIV 232 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~ 232 (571)
...+..+++.+|++++|+|+.++...++..++..+...++|+++|+||+|+...+....+++++
T Consensus 79 ~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~ 142 (194)
T cd01891 79 GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVF 142 (194)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999888888887888878899999999999997654444444443
No 73
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.91 E-value=4.7e-23 Score=200.23 Aligned_cols=130 Identities=38% Similarity=0.507 Sum_probs=113.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecC-cccccchhhhhhhceeEeeceEEEeec-----CeEEEEEcCCC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG-TATMDWMEQEQERGITITSAATTTYWN-----KHRINIIDTPG 164 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g-~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~i~liDTPG 164 (571)
|||+++||+|+|||||+++|++.++.....+....+ +.++|..+.|+++|+|+......+.+. .+.+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 689999999999999999999888876544333332 456899999999999999888887654 47899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
|.+|...+..+++.+|++++|+|+.++...+++.+++.+...++|.++|+||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 99999999999999999999999999988888888888887889999999999986
No 74
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.90 E-value=2.3e-23 Score=200.86 Aligned_cols=116 Identities=26% Similarity=0.363 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-----------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------------- 153 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~----------------- 153 (571)
+||+++||.|+|||||+++|. + ...|+.+.|.++|+|+..+...+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~---~------------~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS---G------------VWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKE 65 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh---C------------CCCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccc
Confidence 489999999999999999994 1 22567778888899988887777664
Q ss_pred ----------C------eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-CchhHHHHHHHHHhcCC-CeEEEEe
Q 008294 154 ----------K------HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGV-PRICFVN 215 (571)
Q Consensus 154 ----------~------~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~~~-p~ivviN 215 (571)
+ ++++|||||||.+|...+..++..+|++++|+|+.++ ...++.+++..+...++ |+++|+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvN 145 (203)
T cd01888 66 DSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQN 145 (203)
T ss_pred ccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEE
Confidence 3 7899999999999999999999999999999999984 67788888888877776 5788999
Q ss_pred cCCccc
Q 008294 216 KMDRLG 221 (571)
Q Consensus 216 K~D~~~ 221 (571)
|+|+..
T Consensus 146 K~Dl~~ 151 (203)
T cd01888 146 KIDLVK 151 (203)
T ss_pred chhccC
Confidence 999865
No 75
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.90 E-value=3.8e-23 Score=197.58 Aligned_cols=119 Identities=26% Similarity=0.444 Sum_probs=103.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--------------CeEE
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--------------KHRI 157 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--------------~~~i 157 (571)
||+++|++|+|||||+++|+... +...++...+|.++|+|+......+.+. ++.+
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~-----------~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIA-----------STAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQI 70 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhcc-----------chhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceE
Confidence 79999999999999999997321 2345677888999999999988877775 7899
Q ss_pred EEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 158 NIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 158 ~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
++||||||.+|......+...+|++++|+|+.++...++.+.+..+...++|+++|+||+|+..
T Consensus 71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 9999999999988888889999999999999999888888877777777899999999999864
No 76
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=9.3e-24 Score=210.42 Aligned_cols=287 Identities=21% Similarity=0.261 Sum_probs=211.7
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceee------------e-eecCcccccchhhhhhhceeEeeceEEEee
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG------------E-VHEGTATMDWMEQEQERGITITSAATTTYW 152 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g------------~-~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~ 152 (571)
+.+...|+.++||+++||||+-+.+++.+|....+. + -..-.+++|++.+|+++|-|+......++.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 346788999999999999999999988877654321 0 011136799999999999999999999999
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcCCCeE-EEEecCCccccch
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVPRI-CFVNKMDRLGANF 224 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~ 224 (571)
...+++++|+|||..|..+++.+..+||.+++|+.+..|- ..||+++..+++..++..+ +++||||-+..++
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 9999999999999999999999999999999999997432 3599999999999998875 5689999776542
Q ss_pred h-hhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcC
Q 008294 225 F-RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELD 303 (571)
Q Consensus 225 ~-~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~ 303 (571)
. +-++++.+++
T Consensus 235 s~eRy~E~~~k~-------------------------------------------------------------------- 246 (501)
T KOG0459|consen 235 SNERYEECKEKL-------------------------------------------------------------------- 246 (501)
T ss_pred chhhHHHHHHHH--------------------------------------------------------------------
Confidence 1 1122222111
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhh----cccCcceeeeeccccCCCChHHHHHHHHHh--CCCCCCCCCCCCCCCCCcc
Q 008294 304 DEAMESYLEGNEPDEETIKKLIRKG----TIAGSFVPVLCGSAFKNKGVQPLLDAVVDY--LPSPLDLPAMKGTDPENPE 377 (571)
Q Consensus 304 ~~l~e~~l~~~~~~~~~l~~~l~~~----~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~--lP~p~~~~~~~~~~~~~~~ 377 (571)
..-|+.. ...-.+ +.+|.++|.++.+..+.++-+ .|++.+. . +.-
T Consensus 247 ------------------~~fLr~~g~n~~~d~~f---~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~-------l-d~l 297 (501)
T KOG0459|consen 247 ------------------QPFLRKLGFNPKPDKHF---VPVSGLTGANVKDRTDSVCPWYKGPIFLEY-------L-DEL 297 (501)
T ss_pred ------------------HHHHHHhcccCCCCcee---eecccccccchhhcccccCCcccCCcccee-------h-hcc
Confidence 1111100 011123 345889998888766522211 2222210 0 000
Q ss_pred ccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEE
Q 008294 378 ATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIA 457 (571)
Q Consensus 378 ~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~ 457 (571)
.. .+-+.++|+++.|..-+.| +|++.+|+|-||+++.|+.+...++++...|..||.- -.+++++.|||.+-
T Consensus 298 ~~--~~R~~~GP~~~pI~~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~d----dvE~~~~~pGenvk 369 (501)
T KOG0459|consen 298 PH--LERILNGPIRCPVANKYKD--MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSD----DVETDRVAPGENVK 369 (501)
T ss_pred Cc--ccccCCCCEEeehhhhccc--cceEEEEEecccceecCCeEEEccCCcceEEEEEecc----cceeeeccCCcceE
Confidence 00 1123589999999877765 4899999999999999999999999888888887743 37899999999988
Q ss_pred E--eCCC--CccccceecCCCCcc
Q 008294 458 L--AGLK--DTITGETLCDADHPI 477 (571)
Q Consensus 458 i--~gl~--~~~~Gdtl~~~~~~~ 477 (571)
| .|++ ++..|-+||++.+++
T Consensus 370 ~rlkgieeedi~~GfiL~~~~n~~ 393 (501)
T KOG0459|consen 370 LRLKGIEEEDISPGFILCSPNNPC 393 (501)
T ss_pred EEecccchhhccCceEEecCCCcc
Confidence 7 6765 488999999998876
No 77
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.89 E-value=1.3e-22 Score=197.67 Aligned_cols=141 Identities=20% Similarity=0.195 Sum_probs=111.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEE----------------------
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATT---------------------- 149 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~---------------------- 149 (571)
+|+++|+.++|||||+++|.. +.... +. ......++.+.+|.++|.|.......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~-~~-~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 76 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDN-GR-GKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDI 76 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCC-CC-CeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccc
Confidence 478999999999999999973 21111 11 01124567788999999987544321
Q ss_pred --EeecCeEEEEEcCCCCCCcHHHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc-ch
Q 008294 150 --TYWNKHRINIIDTPGHVDFTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NF 224 (571)
Q Consensus 150 --~~~~~~~i~liDTPG~~~f~~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~-~~ 224 (571)
+...++.++|+|||||.+|...+..++. .+|++++|||+.+|...++++++..+...++|+++|+||+|+... ..
T Consensus 77 ~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 77 EICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHH
Confidence 2335688999999999999999999986 789999999999999999999999999999999999999998654 36
Q ss_pred hhhHHHHHHHhC
Q 008294 225 FRTRDMIVTNLG 236 (571)
Q Consensus 225 ~~~~~~i~~~l~ 236 (571)
.+.++++++.+.
T Consensus 157 ~~~~~~l~~~L~ 168 (224)
T cd04165 157 QETLKDLKRILK 168 (224)
T ss_pred HHHHHHHHHHhc
Confidence 677777777664
No 78
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=1.6e-21 Score=184.82 Aligned_cols=142 Identities=45% Similarity=0.680 Sum_probs=115.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+|+|+............. ...++....+..+|+|+......+.+.+..++||||||+.++...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVE--ETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCcee--cccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHH
Confidence 589999999999999999986654433222111 144666777888999999888888889999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc-cchhhhHHHHHHHh
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNL 235 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~-~~~~~~~~~i~~~l 235 (571)
+..+++.+|++++|+|+.++...+..+.+..+...++|+++|+||+|+.. .+.....+++++.+
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~ 143 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELL 143 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHH
Confidence 99999999999999999999888888888888888999999999999975 33444455555444
No 79
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.88 E-value=2.1e-22 Score=198.48 Aligned_cols=281 Identities=20% Similarity=0.268 Sum_probs=206.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCc----ccccchhhhhhhceeEeeceEE-----------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATT----------------- 149 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~----~~~d~~~~e~~~g~t~~~~~~~----------------- 149 (571)
.+++++|.+++|||||+..|.+ |+.+.|. .-+..++.|.+.|-|.....--
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTH--------geLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg 205 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTH--------GELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHG 205 (641)
T ss_pred EEEEEEecccCCcceeEeeeee--------cccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCC
Confidence 5799999999999999998852 3333332 2233455566666554433222
Q ss_pred --Eee------cCeEEEEEcCCCCCCcHHHHHHHHHh--cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 150 --TYW------NKHRINIIDTPGHVDFTLEVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 150 --~~~------~~~~i~liDTPG~~~f~~~~~~~l~~--~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
++| .-..|+|||.+||+.|.+.+..++.. .|...++|.++.|+-..|.+++..+...++|+++|++|||.
T Consensus 206 ~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 206 HNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDM 285 (641)
T ss_pred CcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeecc
Confidence 222 23569999999999999998888764 49999999999999999999999999999999999999999
Q ss_pred cccc-hhhhHHHHHHHh---CCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHH
Q 008294 220 LGAN-FFRTRDMIVTNL---GAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQM 295 (571)
Q Consensus 220 ~~~~-~~~~~~~i~~~l---~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l 295 (571)
+.++ +++.+.-+.+.+ |+..+|+-+- .-++ +-..+..|
T Consensus 286 CPANiLqEtmKll~rllkS~gcrK~PvlVr--s~DD-------Vv~~A~NF----------------------------- 327 (641)
T KOG0463|consen 286 CPANILQETMKLLTRLLKSPGCRKLPVLVR--SMDD-------VVHAAVNF----------------------------- 327 (641)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcccCcEEEe--cccc-------eEEeeccC-----------------------------
Confidence 9887 455666666555 4444444321 0000 00111111
Q ss_pred HHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 008294 296 IETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPEN 375 (571)
Q Consensus 296 ~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~ 375 (571)
...+++|+|.+|..+|.++. ||.++.+.++....
T Consensus 328 ----------------------------------~Ser~CPIFQvSNVtG~NL~-LLkmFLNlls~R~~----------- 361 (641)
T KOG0463|consen 328 ----------------------------------PSERVCPIFQVSNVTGTNLP-LLKMFLNLLSLRRQ----------- 361 (641)
T ss_pred ----------------------------------ccccccceEEeccccCCChH-HHHHHHhhcCcccc-----------
Confidence 12357899999999999987 88888888865433
Q ss_pred ccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCc----eeecceEEEeccCceeecCeec
Q 008294 376 PEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK----KERIGRLLEMHANSREDVKVAL 451 (571)
Q Consensus 376 ~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~----~~~i~~i~~~~g~~~~~v~~a~ 451 (571)
.+.+.|...+|.++|..|++|+++-|..++|+++.+|.+...++.. ...|++| .+++.+|..+.
T Consensus 362 --------~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSI----HRKRMpV~~Vr 429 (641)
T KOG0463|consen 362 --------LNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSI----HRKRMPVGIVR 429 (641)
T ss_pred --------cccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhh----hhccccceEEe
Confidence 1247889999999999999999999999999999999999876532 2344444 37789999999
Q ss_pred CCCEEEE--eCCC--CccccceecCCCC
Q 008294 452 AGDIIAL--AGLK--DTITGETLCDADH 475 (571)
Q Consensus 452 aGdiv~i--~gl~--~~~~Gdtl~~~~~ 475 (571)
+|+...+ .+++ ++++|.++.++.-
T Consensus 430 cGQtASFALKKIkr~~vRKGMVmVsp~l 457 (641)
T KOG0463|consen 430 CGQTASFALKKIKRKDVRKGMVMVSPKL 457 (641)
T ss_pred ccchhhhHhhhcchhhhhcceEEecCCC
Confidence 9999766 4554 4889999988754
No 80
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.87 E-value=3.7e-22 Score=159.39 Aligned_cols=75 Identities=49% Similarity=0.826 Sum_probs=70.7
Q ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEec
Q 008294 484 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHP 558 (571)
Q Consensus 484 ~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~ 558 (571)
||+|+++++|+|.+++|.++|.+||++|++|||+|++.+|++|||++|+||||+||||+++||+++||++|+++.
T Consensus 1 ~p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~~~~ 75 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVEFGK 75 (75)
T ss_dssp SSS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEEEE-
T ss_pred CCCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeEecC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999873
No 81
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=5.9e-21 Score=196.32 Aligned_cols=113 Identities=26% Similarity=0.334 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc--
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f-- 168 (571)
+.|||+|.+|+|||||+|+|+ |......+ ...|+|.+.......|.++.+.+|||+|..+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~---g~r~AIV~--------------D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~ 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT---GRRIAIVS--------------DTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCeeeEee--------------cCCCCccCCccceeEEcCceEEEEECCCCCcCCc
Confidence 689999999999999999996 43333322 23688999999999999999999999998753
Q ss_pred -------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 169 -------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 169 -------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
..++..++..||++|||||+.+|+++.++++...++..++|+++|+||+|-.
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 3457779999999999999999999999999999998889999999999964
No 82
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.3e-20 Score=199.33 Aligned_cols=241 Identities=25% Similarity=0.255 Sum_probs=161.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------------- 152 (571)
+.+.++|+||++.|||-|++.+....-+.... .|+|.......+..
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegea------------------ggitqqIgAt~fp~~ni~e~tk~~~~~~K~ 535 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEA------------------GGITQQIGATYFPAENIREKTKELKKDAKK 535 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccc------------------cceeeeccccccchHHHHHHHHHHHhhhhh
Confidence 46789999999999999999996321111111 23444444333322
Q ss_pred --cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHH
Q 008294 153 --NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM 230 (571)
Q Consensus 153 --~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 230 (571)
+--.+.+||||||..|.....++...+|.+|+|||..+|+.+||.+.++.++..+.|+||++||+|++
T Consensus 536 ~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRL---------- 605 (1064)
T KOG1144|consen 536 RLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRL---------- 605 (1064)
T ss_pred hcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhh----------
Confidence 22358899999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeee-cccHHHHHH----HHHHHHHHHHHHhhcCHH
Q 008294 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYE-DIPANLQKM----AQEYRSQMIETIVELDDE 305 (571)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~----~~~~~~~l~e~~~~~~~~ 305 (571)
|||..... ++-+.+... ..++..++-..+.+
T Consensus 606 ----------------------------------------Ygwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~e---- 641 (1064)
T KOG1144|consen 606 ----------------------------------------YGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVE---- 641 (1064)
T ss_pred ----------------------------------------cccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHH----
Confidence 22222111 111111111 11222222222222
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCC
Q 008294 306 AMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAAS 385 (571)
Q Consensus 306 l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~ 385 (571)
+.|+-|+ .+|+ -+-...+.++-++.+||.+|.||.+|+-+|+++...-.. -...
T Consensus 642 faEQgLN------~~Ly---ykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~-----------------~kl~ 695 (1064)
T KOG1144|consen 642 FAEQGLN------AELY---YKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV-----------------EKLA 695 (1064)
T ss_pred HHHcccc------hhhe---eecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH-----------------HHHh
Confidence 2222111 0000 011123556778889999999999999999987422111 0001
Q ss_pred CCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCC
Q 008294 386 DDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK 427 (571)
Q Consensus 386 ~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~ 427 (571)
....+.+.|..+-..++.|+-.-+-+..|.|+.||.|.+.+.
T Consensus 696 y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~ 737 (1064)
T KOG1144|consen 696 YVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGL 737 (1064)
T ss_pred hhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCC
Confidence 234577889888888999998888889999999999986543
No 83
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=6.1e-21 Score=188.18 Aligned_cols=285 Identities=20% Similarity=0.269 Sum_probs=208.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCc----ccccchhhhhhhceeEeeceEEEee--------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATTTYW-------------- 152 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~----~~~d~~~~e~~~g~t~~~~~~~~~~-------------- 152 (571)
.++|++|..++|||||+..|. .|..++|. .-+..+++|.+.|-|...+.-.+.+
T Consensus 168 vRvAVlGg~D~GKSTLlGVLT--------QgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLT--------QGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred EEEEEecCcccCcceeeeeee--------cccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 478999999999999999885 23333332 1234466777777665554433322
Q ss_pred -------cCeEEEEEcCCCCCCcHHHHHHHHHhc--CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccc
Q 008294 153 -------NKHRINIIDTPGHVDFTLEVERALRVL--DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 153 -------~~~~i~liDTPG~~~f~~~~~~~l~~~--D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (571)
....++|||.+||.+|...+..++..- |.+++||.|..|+...|++|+..+...++|++++++|+|+....
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccch
Confidence 246799999999999999998888754 99999999999999999999999999999999999999997643
Q ss_pred -hhhhHHHHHHHh---CCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHH
Q 008294 224 -FFRTRDMIVTNL---GAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETI 299 (571)
Q Consensus 224 -~~~~~~~i~~~l---~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ 299 (571)
.+++++++.+.+ |+..+|..+.
T Consensus 320 ~~~~tv~~l~nll~~~Gc~kvp~~Vt------------------------------------------------------ 345 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGCTKVPKRVT------------------------------------------------------ 345 (591)
T ss_pred hHHHHHHHHHHHHhhcCccccceEee------------------------------------------------------
Confidence 677777777665 4433332221
Q ss_pred hhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccc
Q 008294 300 VELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEAT 379 (571)
Q Consensus 300 ~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~ 379 (571)
++++...+.++ ...++++|+|++|..+|.|++ |+..+.+.+|+-..+. +.
T Consensus 346 -----------------~~ddAv~Aaq~-~~s~nivPif~vSsVsGegl~-ll~~fLn~Lsp~~~~~-----------e~ 395 (591)
T KOG1143|consen 346 -----------------TKDDAVKAAQE-LCSGNIVPIFAVSSVSGEGLR-LLRTFLNCLSPAGTAE-----------ER 395 (591)
T ss_pred -----------------chHHHHHHHHH-hccCCceeEEEEeecCccchh-HHHHHHhhcCCcCChH-----------HH
Confidence 12233333333 456889999999999999998 5666666665543211 10
Q ss_pred ccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCC--Cc--eeecceEEEeccCceeecCeecCCCE
Q 008294 380 LERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GK--KERIGRLLEMHANSREDVKVALAGDI 455 (571)
Q Consensus 380 ~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~--~~--~~~i~~i~~~~g~~~~~v~~a~aGdi 455 (571)
.. -...|...+|..+|..|.+|.+.-|.+.+|.++.|+.+.+.+. |. +.++..|. +++.++..+.||+-
T Consensus 396 ~~---L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~----Rnr~acrvvraGqa 468 (591)
T KOG1143|consen 396 IQ---LVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIR----RNRQACRVVRAGQA 468 (591)
T ss_pred HH---HhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeee----ccccceeeecCccc
Confidence 00 1256778899999999999999999999999999999997654 33 34566654 55688889999999
Q ss_pred EEEe-CCCC---ccccceecCCC
Q 008294 456 IALA-GLKD---TITGETLCDAD 474 (571)
Q Consensus 456 v~i~-gl~~---~~~Gdtl~~~~ 474 (571)
..+. +.-+ ++.|.+|....
T Consensus 469 Aslsl~d~D~~~LR~GMVl~~~~ 491 (591)
T KOG1143|consen 469 ASLSLNDPDGVSLRRGMVLAEID 491 (591)
T ss_pred eeeeccCCCccchhcceEEeecC
Confidence 8884 2222 67898887654
No 84
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.85 E-value=2.3e-20 Score=172.78 Aligned_cols=116 Identities=27% Similarity=0.396 Sum_probs=94.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-CeEEEEEcCCCCCCcHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVDFTL 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~liDTPG~~~f~~ 170 (571)
+|+++|++|+|||||+++|. +.. .+..+.+..+++|+......+.+. +..+++|||||+.+|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~---~~~------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 66 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALT---GIE------------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIK 66 (164)
T ss_pred EEEEEecCCCCHHHHHHHHh---Ccc------------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHH
Confidence 79999999999999999996 210 122234455677888777777776 78999999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC-CeEEEEecCCcccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV-PRICFVNKMDRLGA 222 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~-p~ivviNK~D~~~~ 222 (571)
.+..+++.+|++++|+|+.++...++.+.+..+...+. |+++|+||+|+...
T Consensus 67 ~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 67 NMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE 119 (164)
T ss_pred HHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH
Confidence 88889999999999999998888888877777766676 99999999998653
No 85
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.84 E-value=5.4e-20 Score=167.34 Aligned_cols=112 Identities=21% Similarity=0.312 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH-
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~- 169 (571)
.+|+++|.+|+|||||+|+|. |...+.+.+ +|+|+......+.+.+..+.|+||||..++.
T Consensus 1 i~ialvG~PNvGKStLfN~Lt---g~~~~v~n~---------------pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~ 62 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALT---GAKQKVGNW---------------PGTTVEKKEGIFKLGDQQVELVDLPGIYSLSS 62 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHH---TTSEEEEES---------------TTSSSEEEEEEEEETTEEEEEEE----SSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCceecCC---------------CCCCeeeeeEEEEecCceEEEEECCCcccCCC
Confidence 379999999999999999995 666555553 5778888888899899999999999975541
Q ss_pred ---HH--HHHHH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 170 ---LE--VERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ---~~--~~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.+ +..++ ...|++|+|+||++ ..+...+..++.+.++|+++|+||+|+...
T Consensus 63 ~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 63 KSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAER 120 (156)
T ss_dssp SSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHH
T ss_pred CCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHH
Confidence 11 23333 46799999999987 456677788889999999999999997643
No 86
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=9.8e-20 Score=177.88 Aligned_cols=116 Identities=23% Similarity=0.304 Sum_probs=94.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC--
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-- 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~-- 167 (571)
.--|+|+|.+|+|||||+|+|+ |....+.+..++ +|......-+..++.++.|+||||...
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~---G~KisIvS~k~Q--------------TTR~~I~GI~t~~~~QiIfvDTPGih~pk 68 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALV---GQKISIVSPKPQ--------------TTRNRIRGIVTTDNAQIIFVDTPGIHKPK 68 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHh---cCceEeecCCcc--------------hhhhheeEEEEcCCceEEEEeCCCCCCcc
Confidence 4568999999999999999997 655554443333 355555555666789999999999654
Q ss_pred ------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 168 ------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 ------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
....+..++..+|+++||||+.+++...++.+++.++..+.|+++++||+|+...
T Consensus 69 ~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~ 129 (298)
T COG1159 69 HALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP 129 (298)
T ss_pred hHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc
Confidence 3555777889999999999999999999999999999888999999999998654
No 87
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.82 E-value=9.6e-20 Score=205.34 Aligned_cols=240 Identities=19% Similarity=0.182 Sum_probs=174.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+|+|. |...+.+++ .|+|++.....+.+++..+++|||||+.++.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Lt---g~~~~vgn~---------------pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLT---GARQRVGNW---------------AGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHh---CCCCccCCC---------------CCceEeeEEEEEEcCceEEEEEECCCccccc
Confidence 3589999999999999999995 443333332 5778888888888899999999999998874
Q ss_pred H--------HH--HHHH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc-cchhhhHHHHHHHhC
Q 008294 170 L--------EV--ERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLG 236 (571)
Q Consensus 170 ~--------~~--~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~-~~~~~~~~~i~~~l~ 236 (571)
. +. ..++ ..+|++++|+|+++.. .....+.++.+.++|+++|+||+|+.. .......+++++.+|
T Consensus 65 ~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG 142 (772)
T PRK09554 65 TISSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLG 142 (772)
T ss_pred cccccccHHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhC
Confidence 2 11 1222 3689999999998743 334566778889999999999999864 344556788899999
Q ss_pred CcceeeeccCCCC-CCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHhcCC
Q 008294 237 AKPLVVQLPVGAE-DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL-DDEAMESYLEGN 314 (571)
Q Consensus 237 ~~~~~~~~pi~~~-~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~-~~~l~e~~l~~~ 314 (571)
...+++..+.+.+ +++.+.++..... + .....++|++..+..++.++.+.|.+.+. ++.++.+|+|++
T Consensus 143 ~pVvpiSA~~g~GIdeL~~~I~~~~~~---------~-~~~~~~yp~~le~~I~~l~~~L~e~iae~~~RwLAiKlLEgD 212 (772)
T PRK09554 143 CPVIPLVSTRGRGIEALKLAIDRHQAN---------E-NVELVHYPQPLLNEADSLAKVMPSDIPLQQRRWLGLQMLEGD 212 (772)
T ss_pred CCEEEEEeecCCCHHHHHHHHHHhhhc---------c-CCcccCCCHHHHHHHHHHHHHhhhhhccccchHHHHHHhcCc
Confidence 9888888887766 4444443322110 0 11124577778888888888888877655 788999999987
Q ss_pred CCCHH------HHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhC
Q 008294 315 EPDEE------TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYL 359 (571)
Q Consensus 315 ~~~~~------~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~l 359 (571)
..+.+ ++.+.+++........|.+++++.+..+++.+++.+....
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ia~~ry~~i~~l~~~~v~~~ 263 (772)
T PRK09554 213 IYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDAVSNTL 263 (772)
T ss_pred hHHHhhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 65554 4445555555555556888899999999999999988643
No 88
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.82 E-value=3.7e-19 Score=165.51 Aligned_cols=114 Identities=32% Similarity=0.355 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec---CeEEEEEcCCCCCC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGHVD 167 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~i~liDTPG~~~ 167 (571)
++|+++|++|+|||||+++|...... . ....++|.......+.+. +..+++|||||+.+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~--~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~ 62 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA--A----------------GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA 62 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc--c----------------ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH
Confidence 46999999999999999999722110 0 012345655555555553 78899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
|...+..++..+|++++|+|+.++...++.+.+..+...++|+++|+||+|+...
T Consensus 63 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 63 FTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNA 117 (168)
T ss_pred HHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccc
Confidence 9888888999999999999999988888888888888899999999999998644
No 89
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.79 E-value=3.4e-18 Score=172.18 Aligned_cols=111 Identities=22% Similarity=0.212 Sum_probs=79.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc---
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF--- 168 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f--- 168 (571)
.|+++|++|+|||||+|+|+ |......+.. .++|..........++.++.||||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~---~~~~~~vs~~--------------~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~ 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLH---GQKISITSPK--------------AQTTRNRISGIHTTGASQIIFIDTPGFHEKKHS 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHh---CCcEeecCCC--------------CCcccCcEEEEEEcCCcEEEEEECcCCCCCcch
Confidence 58999999999999999997 3221111111 233433322333446678999999998653
Q ss_pred -----HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 169 -----TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 169 -----~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
...+..++..+|++++|+|++++.... ..++..+...+.|+++|+||+|+.
T Consensus 65 l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 65 LNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 223456788999999999999865544 556677777899999999999985
No 90
>PRK15494 era GTPase Era; Provisional
Probab=99.79 E-value=4e-18 Score=176.57 Aligned_cols=117 Identities=17% Similarity=0.244 Sum_probs=86.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|++|+|||||+|+|+ |......+ ...++|.......+.+++.+++||||||+.+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~---~~k~~ivs--------------~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~ 112 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRII---GEKLSIVT--------------PKVQTTRSIITGIITLKDTQVILYDTPGIFE 112 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHh---CCceeecc--------------CCCCCccCcEEEEEEeCCeEEEEEECCCcCC
Confidence 345789999999999999999997 21111111 1123444444445667888999999999854
Q ss_pred c--------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 F--------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f--------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
. ......++..+|++++|+|+.+++...+..++..++..+.|.++|+||+|+..
T Consensus 113 ~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 113 PKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES 174 (339)
T ss_pred CcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc
Confidence 2 22234467899999999999988887777777777778889999999999853
No 91
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=3.2e-18 Score=176.21 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=101.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC-
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~- 167 (571)
....|||+|.||+|||||+|+|+ |..+...+. ..|+|+++....+++++..+.+|||+|...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~il---geeR~Iv~~--------------~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk 239 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAIL---GEERVIVSD--------------IAGTTRDSIDIEFERDGRKYVLIDTAGIRRK 239 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhc---cCceEEecC--------------CCCccccceeeeEEECCeEEEEEECCCCCcc
Confidence 56899999999999999999997 444333332 357799999999999999999999999654
Q ss_pred ---------c-HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 168 ---------F-TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 ---------f-~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
| ...+..++..+|.+++|+||.+|+..|+..+...+.+.+.++++|+||.|+...
T Consensus 240 ~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 240 GKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred cccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCc
Confidence 2 344788999999999999999999999999999999999999999999998653
No 92
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.78 E-value=1.1e-18 Score=143.27 Aligned_cols=84 Identities=31% Similarity=0.414 Sum_probs=80.1
Q ss_pred CCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCcccc
Q 008294 388 EPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITG 467 (571)
Q Consensus 388 ~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~G 467 (571)
+||+++|||+.+|++.|+++|+|||+|+|+.||.|++.. ++.+++++|+.++|.++.++++|.||||+++.|++++.+|
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~G 80 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKGLRVG 80 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEECCCCCcCc
Confidence 789999999999999999999999999999999999877 6678999999999999999999999999999999999999
Q ss_pred ceecC
Q 008294 468 ETLCD 472 (571)
Q Consensus 468 dtl~~ 472 (571)
|||++
T Consensus 81 dtl~~ 85 (85)
T cd03690 81 DVLGD 85 (85)
T ss_pred cccCC
Confidence 99963
No 93
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.78 E-value=3.5e-18 Score=158.97 Aligned_cols=116 Identities=20% Similarity=0.172 Sum_probs=81.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
||+++|+.|+|||||+++|....+.. .+... .....|+......+.+++..+++|||||+.+|...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~-------~~~~~-------~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 66 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY-------KGLPP-------SKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSL 66 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc-------cCCcc-------cccCCccccceEEEEECCEEEEEEECCCChhhHHH
Confidence 58999999999999999997432210 00000 01122444444556677899999999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHHH----hcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQ-SETVWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
+...++.+|++++|+|+.+.-... ....+..+. ..++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 67 WDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred HHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 899999999999999997642211 122222222 24799999999999854
No 94
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=5e-18 Score=155.69 Aligned_cols=112 Identities=25% Similarity=0.293 Sum_probs=87.2
Q ss_pred EEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH---
Q 008294 94 GIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL--- 170 (571)
Q Consensus 94 ~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~--- 170 (571)
+++|++|+|||||+++|+.. ..... +...++|.........+.++.+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~---~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 63 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGR---RDAIV--------------EDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGIS 63 (157)
T ss_pred CccCCCCCCHHHHHHHHhCC---cEEee--------------cCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHH
Confidence 58999999999999999721 10000 11234565555666677889999999999998644
Q ss_pred -----HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 171 -----EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 171 -----~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.....++.+|++++|+|+.++.......+++.++..++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 64 KEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE 120 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh
Confidence 4566788999999999999888777778888888889999999999998653
No 95
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.76 E-value=1.5e-17 Score=178.79 Aligned_cols=116 Identities=22% Similarity=0.194 Sum_probs=93.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|++|+|||||+|+|+.... ... ....|+|.......+.+++..+.+|||||+.+
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~---~~~--------------~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~ 232 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEER---VIV--------------SDIAGTTRDSIDIPFERNGKKYLLIDTAGIRR 232 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCe---eec--------------CCCCCceECcEeEEEEECCcEEEEEECCCccc
Confidence 3457899999999999999999972211 111 11346677777677777888999999999865
Q ss_pred cH-----------HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 168 FT-----------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 168 f~-----------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
+. .....+++.+|++|+|+|+.++...++..++..+...++|+++|+||+|+.
T Consensus 233 ~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 233 KGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred cccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 42 123557899999999999999999999999999999999999999999986
No 96
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=1.9e-17 Score=178.26 Aligned_cols=117 Identities=21% Similarity=0.214 Sum_probs=94.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|++|+|||||+|+|+.... ... ....|+|.......+.+++..+.+|||||+.+
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~---~~~--------------~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~ 233 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEER---VIV--------------SDIAGTTRDSIDTPFERDGQKYTLIDTAGIRR 233 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCc---eee--------------cCCCCceEEEEEEEEEECCeeEEEEECCCCCC
Confidence 3468999999999999999999973211 111 11357788777777778889999999999754
Q ss_pred cH-----------HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 FT-----------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~-----------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.. .....+++.+|++|+|+|+.++...++..++..+...++|+++|+||+|+..
T Consensus 234 ~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 234 KGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVD 298 (435)
T ss_pred CcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCC
Confidence 21 2345688899999999999999999999999999999999999999999863
No 97
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.76 E-value=1.5e-17 Score=156.03 Aligned_cols=112 Identities=21% Similarity=0.176 Sum_probs=78.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
..++|+++|++|+|||||+++|... .. .. + +...| .....+.+++..+++|||||+..|
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~--~~---~~---------~---~~t~g----~~~~~~~~~~~~l~l~D~~G~~~~ 71 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE--DI---DT---------I---SPTLG----FQIKTLEYEGYKLNIWDVGGQKTL 71 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CC---CC---------c---CCccc----cceEEEEECCEEEEEEECCCCHHH
Confidence 4568999999999999999999621 00 00 0 01112 122234456789999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhH-HHHHHHH----HhcCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQA----DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~----~~~~~p~ivviNK~D~~~ 221 (571)
...+...++.+|++++|+|+.+...... ...+..+ ...++|+++|+||+|+..
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 72 RPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 8888889999999999999987532211 1112222 225789999999999864
No 98
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.76 E-value=2e-17 Score=152.86 Aligned_cols=112 Identities=20% Similarity=0.192 Sum_probs=77.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++|..... ...... ...|.+ ...+.+.+..+++|||||+.+|...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~---~~~~~~------------~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~~~~ 61 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENA---QSQIIV------------PTVGFN----VESFEKGNLSFTAFDMSGQGKYRGL 61 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCC---Ccceec------------Cccccc----eEEEEECCEEEEEEECCCCHhhHHH
Confidence 588999999999999999962110 000000 011222 2234567889999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhH-HHHHHHH------HhcCCCeEEEEecCCcccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQS-ETVWRQA------DKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~------~~~~~p~ivviNK~D~~~~ 222 (571)
+..+++.+|++|+|+|+++...... ...+..+ ...++|+++|+||+|+..+
T Consensus 62 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 62 WEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred HHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 9999999999999999987543211 1112222 1247999999999998653
No 99
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.75 E-value=5.3e-18 Score=138.93 Aligned_cols=83 Identities=51% Similarity=0.773 Sum_probs=79.4
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccce
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 469 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdt 469 (571)
|+++|||+.+|++.|+++++|||+|+|++||.|++...++.+++++|+.++|.++.++++|.||||+++.|++++.+|||
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdt 80 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTRTGDT 80 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCcccCCE
Confidence 57999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred ecC
Q 008294 470 LCD 472 (571)
Q Consensus 470 l~~ 472 (571)
||.
T Consensus 81 l~~ 83 (83)
T cd04092 81 LVT 83 (83)
T ss_pred EeC
Confidence 973
No 100
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=3.5e-17 Score=152.37 Aligned_cols=116 Identities=21% Similarity=0.204 Sum_probs=86.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
.++|+++|++|+|||||+++|+.... ... ...++.+.......+..++..+++|||||+.+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~ 64 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEER---VIV--------------SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKG 64 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc---eec--------------cCCCCCccCceeeEEEECCeeEEEEECCCCcccc
Confidence 46899999999999999999973211 000 1123445555445566677889999999986541
Q ss_pred -----------HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 170 -----------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 -----------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.....+++.+|++++|+|+.++...+....+..+...+.|+++++||+|+...
T Consensus 65 ~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 65 KVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred chhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 12345678899999999999988888877788888889999999999998654
No 101
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=2.1e-17 Score=179.01 Aligned_cols=117 Identities=25% Similarity=0.354 Sum_probs=94.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+.++|+|+|.+|+|||||+|+|+.... . ..+...|+|.+.....+.+.+..++||||||+..
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~---~--------------~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~ 98 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRRE---A--------------VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEP 98 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCc---c--------------cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCC
Confidence 4568999999999999999999972111 0 0112356777777777788899999999999863
Q ss_pred --------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 --------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 --------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+...+..+++.+|++|+|+|+.++.......++..++..++|+++|+||+|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 99 DAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 344566788999999999999999888788888888889999999999999753
No 102
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=2e-17 Score=153.72 Aligned_cols=115 Identities=22% Similarity=0.233 Sum_probs=80.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~ 166 (571)
..++|+++|+.|+|||||+++|+. +..... .....|... ....+.+++ ..++||||||+.
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~--~~~~~~--------------~~~t~~~~~--~~~~~~~~~~~~~l~i~D~~G~~ 63 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKS--GTFSER--------------QGNTIGVDF--TMKTLEIEGKRVKLQIWDTAGQE 63 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhh--CCCccc--------------CCCccceEE--EEEEEEECCEEEEEEEEECCChH
Confidence 357999999999999999999962 211100 001112222 223344444 578999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (571)
+|.......++.+|++++|+|+.+....+....| ..+. ..++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 64 RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 9988888999999999999999876544443333 2222 24789999999999854
No 103
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.75 E-value=2.8e-17 Score=151.66 Aligned_cols=110 Identities=22% Similarity=0.174 Sum_probs=76.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|++|+|||||+++|.... .. ++. .|+......+.+.+..+++|||||+.+|...
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~--~~------------~~~-------~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 59 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE--VV------------TTI-------PTIGFNVETVTYKNLKFQVWDLGGQTSIRPY 59 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC--Cc------------CcC-------CccCcCeEEEEECCEEEEEEECCCCHHHHHH
Confidence 47899999999999999995211 00 000 0211222334557789999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchh-HHHHH-HHHHh---cCCCeEEEEecCCcccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQ-SETVW-RQADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~-~~~~~-~~~~~---~~~p~ivviNK~D~~~~ 222 (571)
+..+++.+|++|+|+|+.+..... ..+.+ ..+.. .++|+++|+||+|+..+
T Consensus 60 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 60 WRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 888999999999999998643221 12222 22222 37899999999998643
No 104
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.74 E-value=4.2e-17 Score=152.41 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=77.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|+.|+|||||+++|.. +... .+. ...|.++ ..+...+..+++|||||+.+|.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~--~~~~------------~~~---~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~ 67 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKL--GQSV------------TTI---PTVGFNV----ETVTYKNVKFNVWDVGGQDKIR 67 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHcc--CCCc------------ccc---CCcccce----EEEEECCEEEEEEECCCCHHHH
Confidence 46899999999999999999962 1110 000 0112222 2334467899999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHH-H---hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQA-D---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~-~---~~~~p~ivviNK~D~~~ 221 (571)
.....+++.+|++|+|+|+++..... ....+... . ..++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 68 PLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 88888899999999999998743221 12223222 2 13689999999999754
No 105
>PRK00089 era GTPase Era; Reviewed
Probab=99.74 E-value=9.8e-17 Score=163.59 Aligned_cols=114 Identities=20% Similarity=0.247 Sum_probs=82.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc-
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF- 168 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f- 168 (571)
...|+++|++|+|||||+|+|+ |......+..+ ++|.......+..++.++.+|||||+.+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~---g~~~~~vs~~~--------------~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALV---GQKISIVSPKP--------------QTTRHRIRGIVTEDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHh---CCceeecCCCC--------------CcccccEEEEEEcCCceEEEEECCCCCCch
Confidence 4579999999999999999997 32211111111 12222222223335689999999998663
Q ss_pred -------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 169 -------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 169 -------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
...+..++..+|++++|+|+.++.......++..+...++|+++|+||+|+.
T Consensus 68 ~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 68 RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 2345567788999999999998777777778888877789999999999986
No 106
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.74 E-value=4.9e-17 Score=150.72 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=79.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++++........ ....+.++......+......+++|||||+..|...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 65 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQ----------------LSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTM 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc----------------CCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhh
Confidence 6899999999999999999732110000 001122222222333334567899999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhc--CCCeEEEEecCCcc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY--GVPRICFVNKMDRL 220 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~--~~p~ivviNK~D~~ 220 (571)
...+++.+|++|+|+|+++....+....| ..+++. ++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 99999999999999999876555444433 334433 79999999999973
No 107
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.74 E-value=6.7e-17 Score=151.85 Aligned_cols=111 Identities=21% Similarity=0.201 Sum_probs=79.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|.. +..... ..|+......+.+++..+.+|||||+..|.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~--~~~~~~-------------------~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 73 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLL--GEVVHT-------------------SPTIGSNVEEIVYKNIRFLMWDIGGQESLR 73 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHcc--CCCCCc-------------------CCccccceEEEEECCeEEEEEECCCCHHHH
Confidence 46899999999999999999962 211100 012222334455678899999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchh--HHHHHHHHHh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQ--SETVWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~--~~~~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
..+..+++.+|++++|+|+++..... ..++...+.. .++|+++++||+|+..
T Consensus 74 ~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 74 SSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 88889999999999999998753222 1222233322 3689999999999864
No 108
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.74 E-value=2.4e-17 Score=177.30 Aligned_cols=113 Identities=24% Similarity=0.312 Sum_probs=92.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC----
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD---- 167 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~---- 167 (571)
+|+++|++|+|||||+|+|+... ... .+...|+|.+.....+.|++..+++|||||+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~---~~~--------------v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~ 63 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKR---DAI--------------VSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDG 63 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC---cce--------------ecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchh
Confidence 48999999999999999997211 111 111246777777788888999999999999743
Q ss_pred ----cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 ----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 ----f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+...+..+++.+|++++|+|+.++....+.+++..+++.++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 445577788999999999999999999999999999999999999999999754
No 109
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.74 E-value=1.5e-17 Score=136.36 Aligned_cols=81 Identities=33% Similarity=0.514 Sum_probs=77.7
Q ss_pred EEEEEEee---cCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccc
Q 008294 392 GLAFKIMS---DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGE 468 (571)
Q Consensus 392 ~~V~k~~~---d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gd 468 (571)
++|||+.+ ||+.|+++|+|||+|+|++||.|++...++.+++++|+.++|.+..++++|.||||+++.|++++.+||
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~~~Gd 80 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNFQIGD 80 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCccccC
Confidence 58999999 999999999999999999999999988887899999999999999999999999999999999999999
Q ss_pred eecC
Q 008294 469 TLCD 472 (571)
Q Consensus 469 tl~~ 472 (571)
|||+
T Consensus 81 tl~~ 84 (85)
T cd03689 81 TLTE 84 (85)
T ss_pred EeeC
Confidence 9985
No 110
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=4.7e-17 Score=176.32 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=90.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
...++|+++|++|+|||||+|+|+... .... ....|+|.+.....+.+++..+.||||||+.+
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~---~~~~--------------s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEE---RSVV--------------DDVAGTTVDPVDSLIELGGKTWRFVDTAGLRR 271 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCC---cccc--------------cCCCCccCCcceEEEEECCEEEEEEECCCccc
Confidence 356899999999999999999997211 1111 11245566666666777888999999999632
Q ss_pred ---------cHHH--HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 ---------FTLE--VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 ---------f~~~--~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+... ...+++.+|++|+|+|++++...+....+..+...++|+++|+||+|+..
T Consensus 272 ~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 272 RVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred cccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 2111 23467899999999999999999998888888889999999999999864
No 111
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.73 E-value=8.6e-17 Score=148.92 Aligned_cols=114 Identities=18% Similarity=0.106 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|.+|+|||||+++++......... .+ .+... .....+......+++|||||+.+|..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~-----~t-----------~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~ 65 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYD-----PT-----------IEDSY-TKQCEIDGQWAILDILDTAGQEEFSA 65 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccC-----CC-----------ccceE-EEEEEECCEEEEEEEEECCCCcchhH
Confidence 589999999999999999998432110000 00 00000 11111222335789999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH----HhcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~----~~~~~p~ivviNK~D~~~ 221 (571)
.+...++.+|++++|+|+.+.........| ..+ ...++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 66 MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc
Confidence 899999999999999999875433322222 222 234789999999999754
No 112
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.73 E-value=7.5e-17 Score=150.13 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH-
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~- 169 (571)
|+|+++|++|+|||||+++|..... ... ...+.|.......+.+++..++||||||+.+..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~---~~~---------------~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 62 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP---EVA---------------PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPL 62 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC---ccC---------------CCCCcccceeEEEEccCceEEEEEECCCcCCccc
Confidence 5899999999999999999972211 000 012334444444455567899999999985311
Q ss_pred -------HHHHHHH-HhcCeEEEEEeCCCCCc---hhHHHHHHHHHhc--CCCeEEEEecCCccc
Q 008294 170 -------LEVERAL-RVLDGAICLFDSVAGVE---PQSETVWRQADKY--GVPRICFVNKMDRLG 221 (571)
Q Consensus 170 -------~~~~~~l-~~~D~~ilVvda~~g~~---~~~~~~~~~~~~~--~~p~ivviNK~D~~~ 221 (571)
.....++ ..+|++++|+|+.+... ......+..+... ++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 63 EERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLT 127 (168)
T ss_pred cCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCc
Confidence 1122222 33689999999986432 1222344455444 799999999999854
No 113
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.73 E-value=6.2e-17 Score=149.18 Aligned_cols=110 Identities=23% Similarity=0.193 Sum_probs=77.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|++|+|||||+++++.... . . ...|.......+.+....+.+|||||+..|...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~---~----------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 59 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--V---T----------------TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 59 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--C---C----------------CCCCcCcceEEEEECCEEEEEEECCCChhhHHH
Confidence 489999999999999999972210 0 0 001222223345556789999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHH----HhcCCCeEEEEecCCcccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQ-SETVWRQA----DKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~----~~~~~p~ivviNK~D~~~~ 222 (571)
....++.+|++++|+|+....... ....+... ...+.|+++|+||+|+...
T Consensus 60 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 60 WKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence 888899999999999998752211 22222222 2357899999999998653
No 114
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.73 E-value=1.1e-16 Score=149.25 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=74.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCe-EEEEEcCCCCCC---
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHVD--- 167 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~i~liDTPG~~~--- 167 (571)
+|+++|++|+|||||+++|. +.....+. ..+.|.......+.+++. .++||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~---~~~~~v~~---------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 63 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAIS---NAKPKIAD---------------YPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGAS 63 (170)
T ss_pred CeEEECCCCCCHHHHHHHHh---cCCccccC---------------CCccccCCcceEEEcCCCCeEEEEecCcccCccc
Confidence 68999999999999999996 21111111 012233333344455565 899999999743
Q ss_pred ----cHHHHHHHHHhcCeEEEEEeCCCC-CchhHHHHH-HHHHh-----cCCCeEEEEecCCccc
Q 008294 168 ----FTLEVERALRVLDGAICLFDSVAG-VEPQSETVW-RQADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 ----f~~~~~~~l~~~D~~ilVvda~~g-~~~~~~~~~-~~~~~-----~~~p~ivviNK~D~~~ 221 (571)
+...+.+.+..+|++++|+|+.+. -..+....| ..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 64 EGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred ccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 344455667779999999999876 233333333 33332 3689999999999754
No 115
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.73 E-value=9.4e-17 Score=148.47 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=79.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|++|+|||||+++|+......... ...|.........+......+++|||||+.+|...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~ 65 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQ----------------HTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSV 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC----------------CceeeeEEEEEEEECCEEEEEEEEECcchHHHHHh
Confidence 78999999999999999997322110000 00122222222333333467899999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH---HhcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQA---DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~---~~~~~p~ivviNK~D~~~ 221 (571)
....++.+|++++|+|+.+.........| ..+ ...++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 66 TRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 88899999999999999986555444444 222 234789999999999753
No 116
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.72 E-value=1.1e-16 Score=148.05 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=75.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||++++.. +... .+.+ ..|.. ...+......+.+|||||+..|...
T Consensus 2 kv~~~G~~~~GKTsli~~l~~--~~~~------------~~~p---t~g~~----~~~~~~~~~~~~l~D~~G~~~~~~~ 60 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKL--GEIV------------TTIP---TIGFN----VETVEYKNISFTVWDVGGQDKIRPL 60 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhc--CCCc------------ccCC---CCCcc----eEEEEECCEEEEEEECCCCHhHHHH
Confidence 689999999999999999962 2111 0000 01221 1234456788999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCch-hHHHHHHHHHh----cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEP-QSETVWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~-~~~~~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
+..+++.+|++|+|+|+++.... +..+.+..+.. .+.|+++++||+|+..
T Consensus 61 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 61 WRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 88899999999999999863221 12222333221 3589999999999854
No 117
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.72 E-value=1.4e-16 Score=149.80 Aligned_cols=111 Identities=18% Similarity=0.119 Sum_probs=78.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||||++++.. +... ++. .|+......+.+.+..+.+|||||+..|.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~--~~~~------------~~~-------~t~~~~~~~~~~~~~~l~l~D~~G~~~~~ 71 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKL--GESV------------TTI-------PTIGFNVETVTYKNISFTVWDVGGQDKIR 71 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCCC------------CcC-------CccccceEEEEECCEEEEEEECCCChhhH
Confidence 46899999999999999999962 2110 000 01112222344577899999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCch-hHHHHHHHHHh----cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEP-QSETVWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~-~~~~~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
..+...++.+|++|+|+|+++.... ...+.+..+.. .++|+++|+||+|+..
T Consensus 72 ~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 72 PLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 8888899999999999999864221 22233333321 3689999999999864
No 118
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.72 E-value=1.1e-16 Score=151.81 Aligned_cols=113 Identities=18% Similarity=0.078 Sum_probs=79.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|.+|+|||||+++|... .... .. .|.......+.+++..+.+|||||+..
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~--~~~~---~~----------------~t~~~~~~~~~~~~~~~~~~D~~G~~~ 73 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKND--RLAQ---HQ----------------PTQHPTSEELAIGNIKFTTFDLGGHQQ 73 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcC--CCcc---cC----------------CccccceEEEEECCEEEEEEECCCCHH
Confidence 34478999999999999999999621 1100 00 012222234455788999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHHH----hcCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
+...+..++..+|++++|+|+++..... ....+..+. ..++|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 74 ARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 8888889999999999999998642211 122222222 25799999999999864
No 119
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.72 E-value=3.2e-17 Score=134.36 Aligned_cols=83 Identities=65% Similarity=1.034 Sum_probs=79.4
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccce
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 469 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdt 469 (571)
++++|||+.+|++.|+++++|||+|+|++||.|++...++.+++.+|+.++|.++.+++++.||||+++.|++++.+|||
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~~Gdt 80 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTATGDT 80 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCCccCCE
Confidence 57899999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred ecC
Q 008294 470 LCD 472 (571)
Q Consensus 470 l~~ 472 (571)
|++
T Consensus 81 l~~ 83 (83)
T cd04088 81 LCD 83 (83)
T ss_pred eeC
Confidence 973
No 120
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.72 E-value=1.1e-16 Score=149.53 Aligned_cols=109 Identities=17% Similarity=0.052 Sum_probs=76.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++|... ... .+ ..|+......+.+.+..+++|||||+.++...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~--~~~------------~~-------~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~ 59 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD--EFM------------QP-------IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPL 59 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcC--CCC------------Cc-------CCcCceeEEEEEECCEEEEEEECCCChhcchH
Confidence 4789999999999999999621 100 00 11222222345567889999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhH-HHHHHHHH----hcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
+...++.+|++++|+|+++...... ...+..+. ..+.|+++|+||+|+..
T Consensus 60 ~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 60 WKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 8899999999999999986422211 12222222 12489999999999853
No 121
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.72 E-value=9.8e-17 Score=152.78 Aligned_cols=112 Identities=21% Similarity=0.157 Sum_probs=78.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|+.|+|||||+++|.. +.. . .. ..|.......+.+++..+.+|||||+.++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~--~~~-~--~~----------------~~T~~~~~~~i~~~~~~~~l~D~~G~~~~ 76 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKD--DRL-A--QH----------------VPTLHPTSEELTIGNIKFKTFDLGGHEQA 76 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc--CCC-c--cc----------------CCccCcceEEEEECCEEEEEEECCCCHHH
Confidence 457889999999999999999962 111 0 00 01222233445567889999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHH----HhcCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQA----DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~----~~~~~p~ivviNK~D~~~ 221 (571)
...+..+++.+|++++|+|+.+..... ....+..+ ...+.|+++|+||+|+..
T Consensus 77 ~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 77 RRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 888888899999999999998642211 12222222 235699999999999864
No 122
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.72 E-value=8.2e-17 Score=147.99 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=78.7
Q ss_pred EEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH---
Q 008294 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE--- 171 (571)
Q Consensus 95 ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~--- 171 (571)
++|++|+|||||++++. +.....+ ...|+|+......+.+++..+++|||||+.++...
T Consensus 1 l~G~~~~GKssl~~~~~---~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~ 62 (158)
T cd01879 1 LVGNPNVGKTTLFNALT---GARQKVG---------------NWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSED 62 (158)
T ss_pred CCCCCCCCHHHHHHHHh---cCccccc---------------CCCCcccccceEEEeeCCeEEEEEECCCccccCCCChh
Confidence 58999999999999996 2211111 12466777766777788889999999999886532
Q ss_pred ---HHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 172 ---VERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ---~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
....+. .+|++++|+|+... ......+..+...++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 63 EKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 334443 89999999999863 2333445566778999999999999864
No 123
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.72 E-value=7.1e-17 Score=149.21 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC----
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV---- 166 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~---- 166 (571)
++|+++|++|+|||||+|+|. |.... ... ...+.+... .+|||||+.
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~---~~~~~----------------------~~~--~~~v~~~~~--~~iDtpG~~~~~~ 52 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQ---GNYTL----------------------ARK--TQAVEFNDK--GDIDTPGEYFSHP 52 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHc---CCCcc----------------------Ccc--ceEEEECCC--CcccCCccccCCH
Confidence 479999999999999999985 21100 000 111122222 379999973
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
++..++..+++.+|++++|+|++++........+.. ..++|+++++||+|+...
T Consensus 53 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~ 106 (158)
T PRK15467 53 RWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDA 106 (158)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcc
Confidence 456666777899999999999998765444333322 346899999999998543
No 124
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.72 E-value=1.3e-16 Score=148.30 Aligned_cols=115 Identities=18% Similarity=0.141 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+++|+.... .. .+.+ ..|++..............+.+|||||+.+|..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~--~~-----------~~~~---t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~ 65 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF--TS-----------AFVS---TVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CC-----------CCCC---ceeeEEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 4799999999999999999973211 00 0000 012222222222222346799999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|..+.........| ..+.. .+.|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 66 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred HHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 889999999999999999864333322222 23322 3678999999999854
No 125
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.71 E-value=1.7e-16 Score=147.18 Aligned_cols=113 Identities=16% Similarity=0.149 Sum_probs=74.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++|+........ ..+. + +.......+......+.+|||||+.+|...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~-----~~t~-----------~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 64 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDY-----DPTI-----------E-DSYRKQIEIDGEVCLLDILDTAGQEEFSAM 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccc-----CCch-----------h-hhEEEEEEECCEEEEEEEEECCCcccchHH
Confidence 6899999999999999999732211000 0000 0 000111112223467889999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HH----HHhcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQ----ADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~----~~~~~~p~ivviNK~D~~~ 221 (571)
....++.+|++++|+|+.+.........| .. ....++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 65 RDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 88999999999999999874333222222 12 2224789999999999754
No 126
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.71 E-value=2.6e-16 Score=148.88 Aligned_cols=112 Identities=18% Similarity=0.136 Sum_probs=78.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||||++++.. +.... + ....|.. ...+..++..+++|||||+..|.
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~--~~~~~------------~---~pt~g~~----~~~~~~~~~~~~i~D~~Gq~~~~ 75 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKL--GEIVT------------T---IPTIGFN----VETVEYKNISFTVWDVGGQDKIR 75 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHcc--CCCcc------------c---cCCccee----EEEEEECCEEEEEEECCCCHHHH
Confidence 46899999999999999999962 11100 0 0111222 22345678899999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhH-HHHHHHH-Hh---cCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQA-DK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~-~~---~~~p~ivviNK~D~~~~ 222 (571)
..+...++.+|++|+|+|+++...... ...+..+ .. .++|+++|+||+|+...
T Consensus 76 ~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 888889999999999999986432221 1122222 11 36899999999998653
No 127
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.71 E-value=1.9e-16 Score=146.34 Aligned_cols=114 Identities=17% Similarity=0.245 Sum_probs=77.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe--ecCeEEEEEcCCCCCCcH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY--WNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~--~~~~~i~liDTPG~~~f~ 169 (571)
+|+++|.+|+|||||+++|...... . ++. ...|.........+. .....++||||||+.+|.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~--~-----------~~~---~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT--K-----------DYK---KTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--C-----------CCC---CcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHH
Confidence 6899999999999999999732110 0 000 001111111112222 235689999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|+.+.........|..... .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 66 AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccc
Confidence 888999999999999999987544444444432222 3799999999999754
No 128
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.71 E-value=1.7e-16 Score=179.94 Aligned_cols=119 Identities=24% Similarity=0.389 Sum_probs=96.8
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
......++|+|+|++|+|||||+|+|+ +..... .+...|+|.+.......|++..+++|||||
T Consensus 270 ~~~~~~~~V~IvG~~nvGKSSL~n~l~---~~~~~i--------------v~~~pGvT~d~~~~~~~~~~~~~~liDT~G 332 (712)
T PRK09518 270 AGPKAVGVVAIVGRPNVGKSTLVNRIL---GRREAV--------------VEDTPGVTRDRVSYDAEWAGTDFKLVDTGG 332 (712)
T ss_pred cccccCcEEEEECCCCCCHHHHHHHHh---CCCcee--------------ecCCCCeeEEEEEEEEEECCEEEEEEeCCC
Confidence 344556899999999999999999997 211111 112357788777777788899999999999
Q ss_pred CCC--------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 165 HVD--------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 165 ~~~--------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
+.. +...+..+++.+|++|+|+|+.+++......++..++..++|+++|+||+|+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 333 WEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred cCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 764 45566778999999999999999998888888888999999999999999974
No 129
>PRK04213 GTP-binding protein; Provisional
Probab=99.71 E-value=2e-16 Score=152.19 Aligned_cols=112 Identities=21% Similarity=0.317 Sum_probs=75.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC-
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~- 167 (571)
+..+|+++|.+|+|||||+|+|. +.... ....+|+|..... +.++ .+++|||||+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~---~~~~~---------------~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~ 65 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELT---GKKVR---------------VGKRPGVTRKPNH--YDWG--DFILTDLPGFGFM 65 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh---CCCCc---------------cCCCCceeeCceE--Eeec--ceEEEeCCccccc
Confidence 45789999999999999999996 21111 1112355655433 2233 689999999633
Q ss_pred ----------cHHHHHH----HHHhcCeEEEEEeCCCC-----------CchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 168 ----------FTLEVER----ALRVLDGAICLFDSVAG-----------VEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 ----------f~~~~~~----~l~~~D~~ilVvda~~g-----------~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
|...+.. ++..+|++++|+|+... ....+.+++..+...++|+++|+||+|+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 66 SGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc
Confidence 2222222 33456899999999642 1234566677777789999999999998654
No 130
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.71 E-value=2.8e-16 Score=146.14 Aligned_cols=116 Identities=17% Similarity=0.199 Sum_probs=77.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++++....... +. ...|++.......+......+.+|||||+.+|.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~-------------~~---~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTES-------------YI---STIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 65 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC-------------CC---CccceeEEEEEEEECCEEEEEEEEECCCcHhHH
Confidence 36899999999999999999972211000 00 001222222222222234678999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
......++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 66 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD 121 (166)
T ss_pred HHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc
Confidence 8888899999999999999874333322222 22222 3689999999999754
No 131
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.71 E-value=2.1e-16 Score=147.35 Aligned_cols=113 Identities=24% Similarity=0.232 Sum_probs=76.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++++.... ... + ....|+.+.............+.+|||||+.+|...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~--~~~-----------~---~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF--EKK-----------Y---VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCC-----------C---CCceeeEEEEEEEEECCEEEEEEEEECCCChhhccc
Confidence 689999999999999999973211 000 0 001122222211222234578999999999998777
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhc--CCCeEEEEecCCcc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY--GVPRICFVNKMDRL 220 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~--~~p~ivviNK~D~~ 220 (571)
....++.+|++|+|+|.++....+....| ..+... ++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 77888999999999999876555444333 222222 79999999999985
No 132
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.71 E-value=2.5e-16 Score=149.28 Aligned_cols=114 Identities=22% Similarity=0.231 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEE-eecCeEEEEEcCCCCCCcH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT-YWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~-~~~~~~i~liDTPG~~~f~ 169 (571)
.+|+++|+.|+|||||++++++.... ... ...|.+........ .+.+..+++|||||+..|.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~----~~~-------------~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 66 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV----NTV-------------PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR 66 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC----CcC-------------CccccceeEEEeeccCCCceEEEEEECCCcHhHH
Confidence 46999999999999999999732211 000 00122221111111 2246789999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHH-----HHHHHHHhcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSE-----TVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~-----~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
..+...++.+|++++|+|+.+....... +++......++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 67 PLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 8888889999999999999875322221 122223345799999999999753
No 133
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.71 E-value=3.4e-16 Score=144.72 Aligned_cols=114 Identities=15% Similarity=0.078 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|.+|+|||||+++++....... ...+ . + ........+......+.||||||+.+|..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-----~~~t-~----------~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEK-----YDPT-I----------E-DSYRKQIEVDGQQCMLEILDTAGTEQFTA 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-----cCCc-h----------h-hhEEEEEEECCEEEEEEEEECCCccccch
Confidence 4799999999999999999973211100 0000 0 0 00011122222345688999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHh----cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETV-WRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|..+......... +..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 65 MRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 88889999999999999986433332222 223322 3689999999999753
No 134
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=3.9e-16 Score=144.97 Aligned_cols=136 Identities=17% Similarity=0.204 Sum_probs=101.8
Q ss_pred ccCCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcC
Q 008294 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (571)
Q Consensus 83 ~~~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDT 162 (571)
.++|.+..+.||++|.+|+|||||+|+|+...+ ..+. ...+|.|.......+.. .+.|+|.
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~-LArt---------------SktPGrTq~iNff~~~~---~~~lVDl 77 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKN-LART---------------SKTPGRTQLINFFEVDD---ELRLVDL 77 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcc-eeec---------------CCCCCccceeEEEEecC---cEEEEeC
Confidence 456777889999999999999999999972211 1111 12357788777665532 3899999
Q ss_pred CCCCC----------cHHHHHHHHH---hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc-chhhhH
Q 008294 163 PGHVD----------FTLEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTR 228 (571)
Q Consensus 163 PG~~~----------f~~~~~~~l~---~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~-~~~~~~ 228 (571)
||+.= +...+..++. ...++++++|+.+++...+++.++.+...++|+++++||+|+... ...+.+
T Consensus 78 PGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l 157 (200)
T COG0218 78 PGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQL 157 (200)
T ss_pred CCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHH
Confidence 99752 2333444443 358899999999999999999999999999999999999999874 355566
Q ss_pred HHHHHHhCC
Q 008294 229 DMIVTNLGA 237 (571)
Q Consensus 229 ~~i~~~l~~ 237 (571)
..+++.++.
T Consensus 158 ~~v~~~l~~ 166 (200)
T COG0218 158 NKVAEELKK 166 (200)
T ss_pred HHHHHHhcC
Confidence 666665544
No 135
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.70 E-value=3.6e-16 Score=144.70 Aligned_cols=115 Identities=15% Similarity=0.106 Sum_probs=78.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|++|+|||||+++|+...-. .. .....|.+.......+......+.+|||||+.+|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~--~~--------------~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~ 65 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFS--EN--------------QESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRS 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CC--------------CCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHH
Confidence 47999999999999999999732110 00 011123233333334444557789999999999888
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh---cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|+.+....... ..+..+.. .++|+++++||+|+..
T Consensus 66 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 66 LAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 888889999999999999864332222 22233333 3588999999999753
No 136
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.70 E-value=9.3e-16 Score=141.44 Aligned_cols=114 Identities=20% Similarity=0.214 Sum_probs=81.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+|+|+ +........ ..+.+.......+...+..+.+|||||+.+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~---~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV---GQKISIVSP--------------KPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh---CCceEeccC--------------CCCceeceEEEEEEcCCeEEEEEECCCCCcch
Confidence 4679999999999999999996 221111110 01112222222334456889999999987643
Q ss_pred --------HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 170 --------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 170 --------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
......+..+|++++|+|+.+..........+.+...+.|.++|+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 234556888999999999998766666667777777789999999999986
No 137
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.70 E-value=2.7e-16 Score=148.87 Aligned_cols=111 Identities=18% Similarity=0.134 Sum_probs=76.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||||++++.. +... .+ .. |+......+...+..+++|||||+..+.
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~--~~~~------------~~---~~----T~~~~~~~~~~~~~~~~l~D~~G~~~~~ 75 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKL--GEVV------------TT---IP----TIGFNVETVEYKNLKFTMWDVGGQDKLR 75 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCcc------------cc---CC----ccccceEEEEECCEEEEEEECCCCHhHH
Confidence 46799999999999999999951 2111 00 00 1111222344577899999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCch-hHHHHHHHH-Hh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEP-QSETVWRQA-DK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~-~~~~~~~~~-~~---~~~p~ivviNK~D~~~ 221 (571)
..+..+++.+|++|+|+|+++.-.. .....+... .. .++|+++|+||.|+..
T Consensus 76 ~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 76 PLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 8888999999999999999753211 112222222 22 3689999999999864
No 138
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.70 E-value=3.1e-16 Score=150.94 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=76.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-ecCeEEEEEcCCCCCCcHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~liDTPG~~~f~~ 170 (571)
+|+++|.+|+|||||+++|+.... .. .+ ....|.......+.+. .....+.||||||+..|..
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~--~~-----------~~---~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~ 65 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIF--SQ-----------HY---KATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG 65 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CC-----------CC---CCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhh
Confidence 689999999999999999973211 00 00 0001112222222222 2356789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHH-------hcCCCeEEEEecCCcc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD-------KYGVPRICFVNKMDRL 220 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~-------~~~~p~ivviNK~D~~ 220 (571)
.....++.+|++|+|+|.++.........|. .+. ..++|+++|+||+|+.
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 8889999999999999998754443333332 111 2468999999999985
No 139
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.70 E-value=3.5e-16 Score=145.76 Aligned_cols=116 Identities=18% Similarity=0.147 Sum_probs=78.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||++++..... .. . + ....|++.......+......+.+|||||+.+|.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f--~~--~---------~---~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 66 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF--NP--S---------F---ISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR 66 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC--Cc--c---------c---ccCccceEEEEEEEECCEEEEEEEEeCCchHHHH
Confidence 57899999999999999999973211 00 0 0 0011222222222222233678999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~---~~~p~ivviNK~D~~~ 221 (571)
......++.+|++|+|+|+.+.........|. .+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 67 TITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 88888899999999999998754433333332 2222 4689999999999864
No 140
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.70 E-value=5.3e-16 Score=142.99 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|.+|+|||||+++|+..... . . ...+ .+.+. .....+......+++|||||+.+|..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~--~-~~~t-----------~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~ 64 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--D--E-YDPT-----------IEDSY-RKQVVIDGETCLLDILDTAGQEEYSA 64 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--C--C-cCCc-----------chheE-EEEEEECCEEEEEEEEECCCCcchHH
Confidence 36899999999999999999832110 0 0 0000 01011 11112222235688999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHH----hcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETV-WRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++++|+|..+......... +..+. ..++|+++|+||+|+..
T Consensus 65 l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 65 MRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999999999999986433222222 22222 34789999999999754
No 141
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.70 E-value=8.8e-17 Score=130.99 Aligned_cols=81 Identities=46% Similarity=0.792 Sum_probs=77.0
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccce
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 469 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdt 469 (571)
|+++|||+.+|++ |+++++|||+|+|++||.|++...++.+++.+|+.+.|.++.+++++.||||+++.|++ +.+|||
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~-~~~Gdt 78 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID-CASGDT 78 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECCC-cccCCE
Confidence 5799999999998 99999999999999999999998888899999999999999999999999999999998 999999
Q ss_pred ecC
Q 008294 470 LCD 472 (571)
Q Consensus 470 l~~ 472 (571)
|++
T Consensus 79 l~~ 81 (81)
T cd04091 79 FTD 81 (81)
T ss_pred ecC
Confidence 973
No 142
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=3.9e-16 Score=168.18 Aligned_cols=113 Identities=26% Similarity=0.329 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC---
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD--- 167 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~--- 167 (571)
++|+++|++|+|||||+|+|+ +...... ....|+|.+.....+.+++..+++|||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~---~~~~~~v--------------~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~ 64 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLT---GKRDAIV--------------ADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD 64 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCceee--------------CCCCCCcccceEEEEEECCcEEEEEECCCCCCcch
Confidence 579999999999999999996 2111110 11246677766777788889999999999987
Q ss_pred -----cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 168 -----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 168 -----f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
+...+..++..+|++|+|+|+.++....+.++...++..++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 65 GFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 33445678899999999999999988888888888888999999999999964
No 143
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.70 E-value=3.2e-16 Score=145.36 Aligned_cols=113 Identities=15% Similarity=0.183 Sum_probs=76.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|++|+|||||+++|+........ ....|.+.......+......+++|||||+.+|...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKY----------------LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV 65 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC----------------CCccceeEEEEEEEECCeEEEEEEEECCccHHHHHH
Confidence 6899999999999999999732110000 000122222222333334578999999999998888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh--------cCCCeEEEEecCCcc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--------YGVPRICFVNKMDRL 220 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--------~~~p~ivviNK~D~~ 220 (571)
....++.+|++|+|+|.++.........| ..+.. .+.|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 66 RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 88889999999999999875433333223 22221 458999999999975
No 144
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.70 E-value=3.2e-16 Score=145.90 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=78.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|+.|+|||||++++... ..... .+ ...|.++......+......+.+|||||+..|.
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~--~~~~~---~~-----------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 65 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEK--KFMAD---CP-----------HTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR 65 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC--CCCCC---CC-----------cccceeEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 358999999999999999999722 11100 00 001222222222233334678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHH---hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~---~~~~p~ivviNK~D~~~ 221 (571)
......++.+|++|+|+|.++....+....|. ... ..+.|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 66 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 88889999999999999998754444443332 222 24678999999999854
No 145
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.70 E-value=5.7e-16 Score=143.72 Aligned_cols=114 Identities=18% Similarity=0.121 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|.+|+|||||+++++. +..... ...+ .+.+.. ....+......+++|||||+..|..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~--~~~~~~---~~~t-----------~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQ--GIFVEK---YDPT-----------IEDSYR-KQVEVDGQQCMLEILDTAGTEQFTA 64 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHh--CCCCcc---cCCc-----------chheEE-EEEEECCEEEEEEEEECCCcccchh
Confidence 3789999999999999999972 211110 0000 010111 1112222346678999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHH----hcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|..+........ .+..+. ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 65 MRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence 9999999999999999987644333222 222222 24789999999999754
No 146
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=1.9e-16 Score=147.51 Aligned_cols=116 Identities=22% Similarity=0.187 Sum_probs=80.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
+..++|+++|++|+|||||+++|.. +.... + ....+........+.+.+ ..+.+|||||+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~--~~~~~------~----------~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~ 66 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQ--GLFPP------G----------QGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ 66 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHh--CCCCC------C----------CCCceeeEEEEEEEEECCEEEEEEEEECCCc
Confidence 4568999999999999999999962 11100 0 001112222223334444 56889999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH----HHHHhcCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW----RQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~----~~~~~~~~p~ivviNK~D~~~ 221 (571)
.+|.......++.+|++++|+|+.++........| ..+...++|.++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 67 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 99999889999999999999999875443333333 222334789999999999753
No 147
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.70 E-value=4.1e-16 Score=149.79 Aligned_cols=114 Identities=20% Similarity=0.180 Sum_probs=78.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
.|+++|..|+|||||+.++.+.... . ++. ...|.......+.+......+++|||+|+.+|...
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~--~-----------~~~---~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l 65 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC--E-----------ACK---SGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI 65 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC--C-----------cCC---CcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHH
Confidence 5889999999999999999732111 0 000 00122222222222223478899999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHH-HH---hcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQ-AD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~-~~---~~~~p~ivviNK~D~~~ 221 (571)
+..+++.+|++|+|+|.++....+....|.. +. ..++|+++|.||+|+..
T Consensus 66 ~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~ 119 (202)
T cd04120 66 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 119 (202)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 9999999999999999998655555444432 22 23689999999999753
No 148
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.70 E-value=2.1e-16 Score=179.21 Aligned_cols=117 Identities=18% Similarity=0.205 Sum_probs=90.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
...++|+++|++|+|||||+|+|+... ..... ...|+|.+.....+.+++..+.||||||+.+
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~---~~~v~--------------~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~ 510 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEE---RAVVN--------------DLAGTTRDPVDEIVEIDGEDWLFIDTAGIKR 510 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcc---ccccC--------------CCCCCCcCcceeEEEECCCEEEEEECCCccc
Confidence 346899999999999999999997221 11111 1245566666666777888999999999742
Q ss_pred ---------cHHH--HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 ---------FTLE--VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 ---------f~~~--~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+... ...+++.+|++++|+|++++...++...+..+...++|+++|+||+|+..
T Consensus 511 ~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 511 RQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred CcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 2111 24457889999999999999999999999888888999999999999864
No 149
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.70 E-value=4e-16 Score=145.60 Aligned_cols=116 Identities=17% Similarity=0.141 Sum_probs=80.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++++.... ..... ...|.+..............+++|||||+.+|.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~--~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 67 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRF--QPVHD--------------LTIGVEFGARMITIDGKQIKLQIWDTAGQESFR 67 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC--CCCCC--------------CccceeEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 46899999999999999999972211 00000 012333333333333344689999999999988
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~---~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|+++....+....|. .++. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 68 SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 88888999999999999998654444443333 2333 3689999999999753
No 150
>PTZ00369 Ras-like protein; Provisional
Probab=99.70 E-value=3.7e-16 Score=148.89 Aligned_cols=115 Identities=16% Similarity=0.155 Sum_probs=77.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++++..... . .+.+ ..|.+. .....+......+++|||||+.+|.
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~-----------~~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 67 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--D-----------EYDP---TIEDSY-RKQCVIDEETCLLDILDTAGQEEYS 67 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--c-----------CcCC---chhhEE-EEEEEECCEEEEEEEEeCCCCccch
Confidence 468999999999999999999732110 0 0000 001111 1112233344678899999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
..+..+++.+|++++|+|+++.........| ..+. ..++|+++|+||+|+..
T Consensus 68 ~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 68 AMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred hhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999999999999875443332222 2222 23789999999999753
No 151
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.69 E-value=4e-16 Score=145.64 Aligned_cols=114 Identities=19% Similarity=0.166 Sum_probs=75.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|++|+|||||+++|+........ ....+.+.......+......+++|||||+.+|...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQY----------------KATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSL 65 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc----------------CCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhH
Confidence 6899999999999999999732110000 000111221111222223356789999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHH--HHh------cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQ--ADK------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~--~~~------~~~p~ivviNK~D~~~ 221 (571)
....++.+|++|+|+|+.+.........|.. +.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 66 GVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 8899999999999999987543332222321 111 2789999999999863
No 152
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.69 E-value=4.9e-16 Score=143.45 Aligned_cols=111 Identities=22% Similarity=0.287 Sum_probs=78.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCCcH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~f~ 169 (571)
+|+++|++|+|||||+++|+...... +...+.+.+.....+.+++ ..+++|||||+..+.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~ 63 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN------------------QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc------------------cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 78999999999999999997221110 0112233333333333433 568999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH-Hhc--CCCeEEEEecCCcc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA-DKY--GVPRICFVNKMDRL 220 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~-~~~--~~p~ivviNK~D~~ 220 (571)
......++.+|++++|+|+.+.........| ..+ ... ++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 64 SLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 8888899999999999999875444443333 222 233 48999999999974
No 153
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.69 E-value=3.8e-16 Score=144.27 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=77.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|++|+|||||+++|+....... .....+.+.......+......+.+|||||+..|...
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD----------------LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTL 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc----------------cCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 689999999999999999972211100 0111233333332333334467999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH----HhcCCCeEEEEecCCcc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRL 220 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~----~~~~~p~ivviNK~D~~ 220 (571)
....++.+|++++|+|+.+....+....| ..+ ...++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 66 TSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 88889999999999999865444433333 222 23578999999999986
No 154
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.69 E-value=4.3e-16 Score=144.12 Aligned_cols=112 Identities=18% Similarity=0.140 Sum_probs=77.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCCcH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~f~ 169 (571)
+|+++|++|+|||||+++|+.... .. ...+.++.......+.+++ ..+++|||||+..|.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 63 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF--SE----------------QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC----------------CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH
Confidence 689999999999999999972211 00 0001122222222333333 678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~---~~~p~ivviNK~D~~~ 221 (571)
......++.+|++|+|+|+.+....+....|. .+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 64 SITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 88899999999999999998755444433342 2222 4689999999999753
No 155
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=6.4e-17 Score=156.17 Aligned_cols=247 Identities=20% Similarity=0.335 Sum_probs=174.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------------- 152 (571)
-..||+.+||+.+||||++.++. |.- . -..+.|-+|.+|+...+.....
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiS---Gv~----T--------vrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s 101 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAIS---GVH----T--------VRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRS 101 (466)
T ss_pred eeeeecceeccccCcceeeeeec---cce----E--------EEehhhhhcceeEEeccccceEEecCCCCCCCcchhhc
Confidence 36799999999999999999983 321 1 1234566788888777654322
Q ss_pred -----------------c----CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-CchhHHHHHHHHHhcCCCe
Q 008294 153 -----------------N----KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGVPR 210 (571)
Q Consensus 153 -----------------~----~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~~~p~ 210 (571)
+ -+.+.|+|+|||+-....+..+....|++++++.+++. .++||-+|+....-+++..
T Consensus 102 ~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkh 181 (466)
T KOG0466|consen 102 FGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKH 181 (466)
T ss_pred cCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhce
Confidence 0 13578999999999999999999999999999998864 5799999998888888777
Q ss_pred EEE-EecCCccccch-hhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHH
Q 008294 211 ICF-VNKMDRLGANF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMA 288 (571)
Q Consensus 211 ivv-iNK~D~~~~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 288 (571)
+++ -||+|+...+. .+-.++|+
T Consensus 182 iiilQNKiDli~e~~A~eq~e~I~-------------------------------------------------------- 205 (466)
T KOG0466|consen 182 IIILQNKIDLIKESQALEQHEQIQ-------------------------------------------------------- 205 (466)
T ss_pred EEEEechhhhhhHHHHHHHHHHHH--------------------------------------------------------
Confidence 654 69999875431 11122222
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCC
Q 008294 289 QEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAM 368 (571)
Q Consensus 289 ~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~ 368 (571)
+|+.| ...+ -.|++.+||--+.+++.+.++|++.+|-|..
T Consensus 206 --------------------kFi~~--------------t~ae--~aPiiPisAQlkyNId~v~eyivkkIPvPvR---- 245 (466)
T KOG0466|consen 206 --------------------KFIQG--------------TVAE--GAPIIPISAQLKYNIDVVCEYIVKKIPVPVR---- 245 (466)
T ss_pred --------------------HHHhc--------------cccC--CCceeeehhhhccChHHHHHHHHhcCCCCcc----
Confidence 22221 1111 1378888999999999999999999999975
Q ss_pred CCCCCCCccccccccCCCCCCeEEEEEEEee--------cCCCceEEEEEEecceeCCCCEEEeCCC-------Cc-eee
Q 008294 369 KGTDPENPEATLERAASDDEPFAGLAFKIMS--------DPFVGSLTFVRVYAGTLSAGSYVLNANK-------GK-KER 432 (571)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--------d~~~G~i~~~rV~sG~l~~gd~v~~~~~-------~~-~~~ 432 (571)
|...|..+.|.+.|. +.-.|-++-|-++.|.|+.||.+-..+. |. ..+
T Consensus 246 ----------------df~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~ 309 (466)
T KOG0466|consen 246 ----------------DFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCR 309 (466)
T ss_pred ----------------ccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEe
Confidence 235666777777763 2234678999999999999999975431 11 111
Q ss_pred --cceEEEeccCceeecCeecCCCEEEE-eCCCC
Q 008294 433 --IGRLLEMHANSREDVKVALAGDIIAL-AGLKD 463 (571)
Q Consensus 433 --i~~i~~~~g~~~~~v~~a~aGdiv~i-~gl~~ 463 (571)
..+|..+. .+..+++.|.+|-.+++ +.++.
T Consensus 310 Pi~SrI~sL~-AE~n~L~~AvPGGLIGVGT~~DP 342 (466)
T KOG0466|consen 310 PIFSRIVSLF-AEQNDLQFAVPGGLIGVGTKMDP 342 (466)
T ss_pred eHHHHHHHHH-hhhccceeecCCceeeeccccCc
Confidence 22233333 23467889999999988 55554
No 156
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.69 E-value=5.8e-16 Score=145.99 Aligned_cols=117 Identities=16% Similarity=0.072 Sum_probs=77.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe----------ecCeEEE
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY----------WNKHRIN 158 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~----------~~~~~i~ 158 (571)
...+|+++|..|+|||||++++.......... ...|.........+. .....+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFI----------------TTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQ 66 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCC----------------CccceEEEEEEEEEcCccccccccCCCEEEEE
Confidence 35789999999999999999997321100000 001111111111111 1236789
Q ss_pred EEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHh----cCCCeEEEEecCCccc
Q 008294 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 159 liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~----~~~p~ivviNK~D~~~ 221 (571)
||||||+.+|.......++.+|++|+|+|+.+....+....|. .+.. .+.|+++|+||+|+..
T Consensus 67 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 67 LWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred EEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 9999999999888899999999999999998744444333332 2222 3678999999999754
No 157
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.69 E-value=3.5e-16 Score=147.71 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=84.7
Q ss_pred ccCCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcC
Q 008294 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (571)
Q Consensus 83 ~~~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDT 162 (571)
.+.+..+.++|+|+|++|+|||||+|+|+..... ... ....|.|.......+ + ..+.+|||
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~-~~~---------------~~~~~~t~~~~~~~~--~-~~~~liDt 71 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKL-ART---------------SKTPGRTQLINFFEV--N-DGFRLVDL 71 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-ccc---------------cCCCCcceEEEEEEe--C-CcEEEEeC
Confidence 3345567789999999999999999999732110 000 001234444332222 2 37999999
Q ss_pred CCCCC----------cHHHHHHHHH---hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 163 PGHVD----------FTLEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 163 PG~~~----------f~~~~~~~l~---~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
||+.+ |...+..+++ .+|++++|+|+..+....+..+++.+...++|+++|+||+|+..
T Consensus 72 pG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 72 PGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred CCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 99742 2333334444 45899999999999999998888888889999999999999864
No 158
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.69 E-value=5.5e-16 Score=141.99 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|++|+|||||+++|...... ..+ ...+++.......+.+.+..+++|||||+.++..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~--~~~---------------~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 64 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRA--IVS---------------DIAGTTRDVIEESIDIGGIPVRLIDTAGIRETED 64 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceE--ecc---------------CCCCCccceEEEEEEeCCEEEEEEECCCcCCCcc
Confidence 37899999999999999999722110 000 0134555555556667788999999999987643
Q ss_pred H--------HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 171 E--------VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 171 ~--------~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
. ....+..+|++++|+|+.+.........+.. ..+.|+++|+||+|+...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 65 EIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCc
Confidence 2 3456778999999999997666555554444 568999999999998643
No 159
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.69 E-value=7.7e-16 Score=142.94 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=77.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++|+...- ... + ....|.+.......+......+.+|||||+..|.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~-----------~---~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 66 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEF--NLD-----------S---KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR 66 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC--CCC-----------C---CCccceEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 46899999999999999999972211 000 0 0011222222222222233578999999999988
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
......++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 67 AITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred HHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 8888899999999999999864443333323 22222 3589999999999753
No 160
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.68 E-value=7.3e-16 Score=142.26 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=73.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCCcHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~f~~ 170 (571)
.|+++|.+|+|||||+++|..... .. . ....|.++ ..+.. ....+.+|||||+..+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~--~~--~-------------~~t~~~~~----~~~~~~~~~~l~i~D~~G~~~~~~ 59 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL--VT--T-------------IPTVGFNV----EMLQLEKHLSLTVWDVGGQEKMRT 59 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc--cc--c-------------cCccCcce----EEEEeCCceEEEEEECCCCHhHHH
Confidence 378999999999999999972211 00 0 00112221 11222 357899999999999888
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhH-HHHHH-HHH---hcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQS-ETVWR-QAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~-~~~---~~~~p~ivviNK~D~~~ 221 (571)
.+...++.+|++|+|+|+.+...... ...+. .+. ..++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 60 VWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 88888999999999999987542111 11122 222 25799999999999854
No 161
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.68 E-value=6.7e-16 Score=142.71 Aligned_cols=113 Identities=18% Similarity=0.135 Sum_probs=75.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++|+......... ++ ..+ .. .....+......+.+|||||+.++...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~-----~~-~~~----------~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 64 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYE-----PT-KAD----------SY-RKKVVLDGEDVQLNILDTAGQEDYAAI 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccC-----Cc-chh----------hE-EEEEEECCEEEEEEEEECCChhhhhHH
Confidence 79999999999999999998322111000 00 000 00 011122234567999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHHH----hcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQ-SETVWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
...+++.+|++++|+|..+.-... ....+.... ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 65 RDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 999999999999999987642211 112222222 25799999999999754
No 162
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.68 E-value=1.6e-15 Score=146.24 Aligned_cols=117 Identities=14% Similarity=0.100 Sum_probs=75.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHV 166 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTPG~~ 166 (571)
+..++|+++|++|+|||||+++|+.... .... ..+.|+......+.+.+ ..+++|||||+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~---~~~~---------------~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~ 100 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADV---YAED---------------QLFATLDPTTRRLRLPDGREVLLTDTVGFI 100 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchh---ccCC---------------ccceeccceeEEEEecCCceEEEeCCCccc
Confidence 4468999999999999999999973210 0000 01223333334444444 389999999985
Q ss_pred Cc-HH-------HHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH---HhcCCCeEEEEecCCcccc
Q 008294 167 DF-TL-------EVERALRVLDGAICLFDSVAGVEPQSETVW-RQA---DKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 167 ~f-~~-------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~---~~~~~p~ivviNK~D~~~~ 222 (571)
+. .. .....+..+|++++|+|+.++........| ..+ ...++|+++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 101 RDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 42 11 122345688999999999876554433222 222 2346899999999998653
No 163
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.67 E-value=1.3e-15 Score=141.68 Aligned_cols=110 Identities=17% Similarity=0.106 Sum_probs=78.4
Q ss_pred EEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHHH
Q 008294 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEV 172 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~ 172 (571)
|+++|..|+|||||+++|..... . . ++. .|+......+.+.+..+.+|||||+.+|...+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~--~--~---------~~~-------pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~ 61 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS--L--E---------SVV-------PTTGFNSVAIPTQDAIMELLEIGGSQNLRKYW 61 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC--c--c---------ccc-------ccCCcceEEEeeCCeEEEEEECCCCcchhHHH
Confidence 78999999999999999972211 0 0 000 01111224456678899999999999999999
Q ss_pred HHHHHhcCeEEEEEeCCCCCchhH-HHHHHHHH--hcCCCeEEEEecCCcccc
Q 008294 173 ERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD--KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 173 ~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~--~~~~p~ivviNK~D~~~~ 222 (571)
..+++.+|++|+|+|+++...... ...+..+. ..++|+++|+||+|+...
T Consensus 62 ~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 62 KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 999999999999999987543222 22223332 257999999999998654
No 164
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.67 E-value=1.4e-15 Score=146.25 Aligned_cols=115 Identities=21% Similarity=0.253 Sum_probs=77.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 166 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~~ 166 (571)
...+|+++|..|+|||||+++|+.... . +. + ....|+... ...+.+. ...+.||||||+.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~--~--~~---------~---~~t~~~~~~--~~~~~~~~~~~~l~l~D~~G~~ 66 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTF--S--GS---------Y---ITTIGVDFK--IRTVEINGERVKLQIWDTAGQE 66 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--C--CC---------c---CccccceeE--EEEEEECCEEEEEEEEeCCCch
Confidence 367899999999999999999972211 0 00 0 001122222 2223333 3578999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
.|.......++.+|++++|+|+++....+....| ..+.. ...|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 67 RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred hHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 9988889999999999999999875443333323 22222 3589999999999753
No 165
>PLN03118 Rab family protein; Provisional
Probab=99.67 E-value=1.9e-15 Score=146.69 Aligned_cols=118 Identities=17% Similarity=0.207 Sum_probs=80.6
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.+...+|+++|+.|+|||||+++|+... .... ....|.+.......+....+.+.||||||+.
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~--~~~~---------------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 73 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSS--VEDL---------------APTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCC--CCCc---------------CCCceeEEEEEEEEECCEEEEEEEEECCCch
Confidence 3445789999999999999999997321 1000 0111223322222332234678999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHH-HH----hcCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQ-AD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~-~~----~~~~p~ivviNK~D~~~ 221 (571)
+|......+++.+|++|+|+|+.+........ .|.. +. ..+.|.++|+||+|+..
T Consensus 74 ~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 74 RFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99988899999999999999998754444332 3422 22 23678999999999854
No 166
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.67 E-value=6.5e-16 Score=149.94 Aligned_cols=119 Identities=20% Similarity=0.298 Sum_probs=89.1
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+..+..+||+||.+|+|||||.|.++ |..... ..++..+|.......+..+..++.|.||||.
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mi---g~kv~~--------------vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGl 130 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMI---GQKVSA--------------VSRKVHTTRHRILGIITSGETQLVFYDTPGL 130 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhh---CCcccc--------------ccccccceeeeeeEEEecCceEEEEecCCcc
Confidence 44578999999999999999999997 221111 1223345666777777888999999999995
Q ss_pred CC------------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc-CCCeEEEEecCCccc
Q 008294 166 VD------------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-GVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~------------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~p~ivviNK~D~~~ 221 (571)
.. +......++..||.+++|+|+.+.-....-.++..++.+ ++|-|+|.||+|...
T Consensus 131 vs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 131 VSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLK 199 (379)
T ss_pred cccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcch
Confidence 43 344567789999999999999863334444556666654 799999999999764
No 167
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.67 E-value=7.6e-16 Score=147.86 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=75.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCCcH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~f~ 169 (571)
+|+++|+.|+|||||+++|+.... .. .+. ..+.......+.+++ ..++||||||+.+|.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~-----------~~~------~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 61 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EP-----------KYR------RTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--Cc-----------cCC------CchhhheeEEEEECCEEEEEEEEECCCchhhh
Confidence 478999999999999999973211 00 000 001111112233334 678999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH----HhcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~----~~~~~p~ivviNK~D~~~ 221 (571)
.....++..+|++|+|+|+.+....+....| ..+ ...++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 62 AMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 8888899999999999999875443322222 122 225799999999999754
No 168
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.67 E-value=1.5e-15 Score=138.92 Aligned_cols=110 Identities=19% Similarity=0.164 Sum_probs=76.5
Q ss_pred EEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHHH
Q 008294 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEV 172 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~ 172 (571)
|+++|+.|+|||||+++|..... . .++. + |.......+..++..+.+|||||+..|...+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~---~----------~~~~-----~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 61 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF---S----------EDTI-----P--TVGFNMRKVTKGNVTLKVWDLGGQPRFRSMW 61 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC---C----------cCcc-----C--CCCcceEEEEECCEEEEEEECCCCHhHHHHH
Confidence 78999999999999999962110 0 0000 0 1112222344567889999999999999989
Q ss_pred HHHHHhcCeEEEEEeCCCCCch-hHHHHHHHHH----hcCCCeEEEEecCCcccc
Q 008294 173 ERALRVLDGAICLFDSVAGVEP-QSETVWRQAD----KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 173 ~~~l~~~D~~ilVvda~~g~~~-~~~~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (571)
..+++.+|++++|+|+.+.... +....+..+. ..++|+++|+||+|+...
T Consensus 62 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 62 ERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 9999999999999999763222 2222333332 247899999999997643
No 169
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=9e-16 Score=146.49 Aligned_cols=115 Identities=21% Similarity=0.205 Sum_probs=75.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||++++....... +...+ ..+.+.......+......++||||||+.+|...
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~---~~~~~------------t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 66 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLN---GNFIA------------TVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSV 66 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc---cCcCC------------cccceeEEEEEEECCEEEEEEEEeCCCcHHHHHh
Confidence 68999999999999999997221100 00000 0111222222222223468999999999998888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
....++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 67 THAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG 120 (191)
T ss_pred hHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh
Confidence 88889999999999999875333222222 23322 3689999999999753
No 170
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.67 E-value=1.8e-15 Score=140.21 Aligned_cols=113 Identities=18% Similarity=0.137 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|.+|+|||||+++++. +..... +.+.. + ........+......+.||||||+..|..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~--~~~~~~-----------~~~t~---~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVS--GTFIEK-----------YDPTI---E-DFYRKEIEVDSSPSVLEILDTAGTEQFAS 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCCC-----------CCCch---h-heEEEEEEECCEEEEEEEEECCCcccccc
Confidence 3799999999999999999973 211110 00000 0 01111122222235688999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCcc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRL 220 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~ 220 (571)
.....++.+|++++|+|.++....+....| ..+.. .++|+++|+||+|+.
T Consensus 65 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 65 MRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred hHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 888899999999999999875433322222 22222 479999999999974
No 171
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.67 E-value=1.4e-15 Score=141.96 Aligned_cols=110 Identities=21% Similarity=0.166 Sum_probs=78.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++|.. ... .. + ..|+......+..++..+++|||||+..|...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~---~~~--~~---------~-------~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~ 59 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQG---EIP--KK---------V-------APTVGFTPTKLRLDKYEVCIFDLGGGANFRGI 59 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhC---CCC--cc---------c-------cCcccceEEEEEECCEEEEEEECCCcHHHHHH
Confidence 489999999999999999962 110 00 0 01222223345567899999999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHHHh----cCCCeEEEEecCCcccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQ-SETVWRQADK----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (571)
+..+++.+|++|+|+|+++..... ....+..+.. .++|+++|+||+|+..+
T Consensus 60 ~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 60 WVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNA 115 (167)
T ss_pred HHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCC
Confidence 999999999999999998743222 2223333322 47899999999998764
No 172
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.67 E-value=9.6e-16 Score=142.55 Aligned_cols=114 Identities=14% Similarity=0.094 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|.+|+|||||+++++. +..... +... -+.+. .....+......+.+|||||+.+|..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~--~~f~~~--------~~~t------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK--GTFRES--------YIPT------IEDTY-RQVISCSKNICTLQITDTTGSHQFPA 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCCC--------cCCc------chheE-EEEEEECCEEEEEEEEECCCCCcchH
Confidence 4689999999999999999972 211100 0000 00011 11223333457799999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh------cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~------~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++|+|+|..+....... ..+..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 65 MQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 888889999999999999876544332 22333332 4689999999999753
No 173
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=1.2e-15 Score=157.00 Aligned_cols=118 Identities=22% Similarity=0.229 Sum_probs=83.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPG 164 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG 164 (571)
..+-+..|+|||.+|||||||+++|. +....... . .++|+......+.+ ++..+++|||||
T Consensus 154 elk~~adVglVG~PNaGKSTLln~ls---~a~~~va~-y--------------pfTT~~p~~G~v~~~~~~~~~i~D~PG 215 (335)
T PRK12299 154 ELKLLADVGLVGLPNAGKSTLISAVS---AAKPKIAD-Y--------------PFTTLHPNLGVVRVDDYKSFVIADIPG 215 (335)
T ss_pred EEcccCCEEEEcCCCCCHHHHHHHHH---cCCCccCC-C--------------CCceeCceEEEEEeCCCcEEEEEeCCC
Confidence 44556789999999999999999996 22222111 1 24467766666766 557899999999
Q ss_pred CCC-------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh-----cCCCeEEEEecCCccc
Q 008294 165 HVD-------FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~-------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~-----~~~p~ivviNK~D~~~ 221 (571)
+.+ +.....+.+..+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+..
T Consensus 216 li~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 216 LIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred ccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 854 344567778889999999999864333333333 33433 3689999999999864
No 174
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=9.1e-16 Score=140.43 Aligned_cols=120 Identities=19% Similarity=0.174 Sum_probs=89.5
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.+...+|.++|..|+|||.|+.++...+.. + ..+..-|+.+......++.+..++++|||+|++
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~--------------e--~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQE 69 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFT--------------E--SYISTIGVDFKIRTVELDGKTIKLQIWDTAGQE 69 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcc--------------h--hhcceeeeEEEEEEeeecceEEEEEeeeccccH
Confidence 355789999999999999999999511110 0 011123444555444555566789999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHh---cCCCeEEEEecCCcccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~---~~~p~ivviNK~D~~~~ 222 (571)
+|...+..++|.|+++|+|+|.++.-.......|. .+++ .++|.++|.||+|+...
T Consensus 70 RFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 70 RFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred HHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhh
Confidence 99999999999999999999999866666666653 3333 37899999999998654
No 175
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.67 E-value=9.9e-16 Score=143.36 Aligned_cols=114 Identities=21% Similarity=0.224 Sum_probs=78.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|+.|+|||||+++|. +..... . ....|.+ ...+.+.+..+.+|||||+..
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~---~~~~~~-----------~---~~t~g~~----~~~i~~~~~~~~~~D~~G~~~ 70 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLA---SEDISH-----------I---TPTQGFN----IKTVQSDGFKLNVWDIGGQRA 70 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHh---cCCCcc-----------c---CCCCCcc----eEEEEECCEEEEEEECCCCHH
Confidence 336789999999999999999996 210000 0 0011222 224455678999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchh-HHHHHHH----HHhcCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQ----ADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~----~~~~~~p~ivviNK~D~~~~ 222 (571)
+...+...++.+|++++|+|+.+..... ....+.. ....++|+++++||+|+...
T Consensus 71 ~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 71 IRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 8888888899999999999998632211 1222222 23357999999999998653
No 176
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.67 E-value=1.9e-15 Score=143.84 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=80.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|..|+|||||+.++.. +.... .+ ....|.......+.+......++||||||+.+
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~--~~~~~-----------~~---~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~ 67 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQD--GSTES-----------PY---GYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR 67 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHc--CCCCC-----------CC---CCcceeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 3467899999999999999999973 11100 00 00112222222222322347889999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
|...+...++.+|++|+|+|.++.........| ..+.. .++|+++|.||+|+..
T Consensus 68 ~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~ 124 (189)
T cd04121 68 FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAF 124 (189)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchh
Confidence 998888889999999999999876554444433 23332 4789999999999753
No 177
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.67 E-value=1.8e-15 Score=141.16 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=76.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++++. +..... + ....|.........+......+.||||||+.+|.
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~--~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 68 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVT--NKFDTQ-----------L---FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFR 68 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHc--CCCCcC-----------c---CCceeeEEEEEEEEECCeEEEEEEEeCCChHHHH
Confidence 57899999999999999999972 111000 0 0011222222222232344678899999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHH-HH-------hcCCCeEEEEecCCcc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQ-AD-------KYGVPRICFVNKMDRL 220 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~-~~-------~~~~p~ivviNK~D~~ 220 (571)
......++.+|++++|+|..+....+....|.. +. ..++|+++|+||+|+.
T Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 69 SLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 888889999999999999986543333332321 11 2468999999999975
No 178
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.67 E-value=1.6e-15 Score=138.65 Aligned_cols=113 Identities=21% Similarity=0.254 Sum_probs=78.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++|......... ....+.+..............+++|||||+..+...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENY----------------KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSI 65 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCcc----------------CCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHH
Confidence 6899999999999999999722211100 001122333333333334578899999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhc---CCCeEEEEecCCcc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY---GVPRICFVNKMDRL 220 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~---~~p~ivviNK~D~~ 220 (571)
....++.+|++++|+|+.+.........| ..+... ++|+++++||+|+.
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 99999999999999999874333332223 334443 58999999999975
No 179
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.67 E-value=1.9e-15 Score=140.70 Aligned_cols=113 Identities=16% Similarity=0.109 Sum_probs=77.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|+.|+|||||+++|+.... .. . .+. + ....++. ..+......+++|||||+.++...
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~--~~--~-~~~-~---------~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~ 63 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF--PE--N-VPR-V---------LPEITIP---ADVTPERVPTTIVDTSSRPQDRAN 63 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--Cc--c-CCC-c---------ccceEee---eeecCCeEEEEEEeCCCchhhhHH
Confidence 689999999999999999973211 10 0 000 0 0011111 122235678999999999988888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCcccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
+...++.+|++++|+|+.+....... ..| ..++. .++|+++|+||+|+...
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 64 LAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDG 118 (166)
T ss_pred HhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccc
Confidence 88888999999999999876554442 233 33332 37899999999998643
No 180
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.67 E-value=1.4e-15 Score=156.49 Aligned_cols=119 Identities=21% Similarity=0.236 Sum_probs=79.7
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTP 163 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTP 163 (571)
...+-+..|++||.+|+|||||+++|.. ....... . ..+|.......+.+.+ ..++|||||
T Consensus 152 lelk~~adV~lvG~pnaGKSTLl~~lt~---~~~~va~-y--------------~fTT~~p~ig~v~~~~~~~~~i~D~P 213 (329)
T TIGR02729 152 LELKLLADVGLVGLPNAGKSTLISAVSA---AKPKIAD-Y--------------PFTTLVPNLGVVRVDDGRSFVIADIP 213 (329)
T ss_pred EEeeccccEEEEcCCCCCHHHHHHHHhc---CCccccC-C--------------CCCccCCEEEEEEeCCceEEEEEeCC
Confidence 3445567899999999999999999962 2111111 1 1234444445555555 899999999
Q ss_pred CCCC-------cHHHHHHHHHhcCeEEEEEeCCCC---CchhHHHHH-HHHHh-----cCCCeEEEEecCCccc
Q 008294 164 GHVD-------FTLEVERALRVLDGAICLFDSVAG---VEPQSETVW-RQADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 164 G~~~-------f~~~~~~~l~~~D~~ilVvda~~g---~~~~~~~~~-~~~~~-----~~~p~ivviNK~D~~~ 221 (571)
|+.+ ......+.+..+|++++|+|+.+. ........| +.+.. .++|+++|+||+|+..
T Consensus 214 Gli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 214 GLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred CcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 9864 334556677789999999999864 122222222 33332 3689999999999864
No 181
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.67 E-value=1.6e-15 Score=142.28 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=77.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+++++. +..... +.+ ..+.... ....+......++||||||..+|..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~--~~f~~~-----------~~~---t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~ 65 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFIS--HSFPDY-----------HDP---TIEDAYK-QQARIDNEPALLDILDTAGQAEFTA 65 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHh--CCCCCC-----------cCC---cccceEE-EEEEECCEEEEEEEEeCCCchhhHH
Confidence 4799999999999999999973 211100 000 0010110 1112222336789999999999998
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++|+|+|..+.........| ..+. ..++|+++|+||+|+..
T Consensus 66 l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 66 MRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred HhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 889999999999999999887665554322 2222 24789999999999753
No 182
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.67 E-value=1.7e-15 Score=139.64 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=75.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++|+......... .+ .+.+.......+......+++|||||+..+...
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHE-----ST-----------TQASFFQKTVNIGGKRIDLAIWDTAGQERYHAL 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcC-----Cc-----------cceeEEEEEEEECCEEEEEEEEECCchHHHHHh
Confidence 79999999999999999998322110000 00 001111112222223457899999999988888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (571)
....++.+|++++|+|..++...+....| ..+. ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 66 GPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 88888999999999999876443333333 2222 23689999999999763
No 183
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.66 E-value=1.9e-15 Score=141.38 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=78.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++++. +..... + ....|.........+......+++|||||+.+|.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~--~~~~~~-----------~---~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 65 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA--GRFPER-----------T---EATIGVDFRERTVEIDGERIKVQLWDTAGQERFR 65 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh--CCCCCc-----------c---ccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH
Confidence 57899999999999999999972 111000 0 0001112222222222234789999999999886
Q ss_pred H-HHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHh----cCCCeEEEEecCCccc
Q 008294 170 L-EVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~-~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~----~~~p~ivviNK~D~~~ 221 (571)
. .....++.+|++++|+|+.+....+....|. .+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 66 KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 4 4666788999999999999876666555554 3332 3689999999999754
No 184
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.66 E-value=1.5e-15 Score=144.90 Aligned_cols=113 Identities=16% Similarity=0.170 Sum_probs=74.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++|+........ ..+ . +... .....+......++||||||+.+|...
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~-----~~t-~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 63 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETY-----DPT-I----------EDSY-RKQVVVDGQPCMLEVLDTAGQEEYTAL 63 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccC-----CCc-h----------HhhE-EEEEEECCEEEEEEEEECCCchhhHHH
Confidence 3889999999999999999732111000 000 0 0011 011112222356899999999999998
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh------cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADK------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~------~~~p~ivviNK~D~~~ 221 (571)
...+++.+|++|+|+|.++.........| ..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 64 RDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 89999999999999999875443332222 32322 4689999999999753
No 185
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.66 E-value=1.9e-15 Score=144.44 Aligned_cols=121 Identities=19% Similarity=0.275 Sum_probs=82.5
Q ss_pred ccCCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcC
Q 008294 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (571)
Q Consensus 83 ~~~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDT 162 (571)
...+....++|+++|++|+|||||+++|+.... ... .....|.|....... + +..+.||||
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~~---------------~~~~~~~t~~~~~~~--~-~~~l~l~Dt 77 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKN-LAR---------------TSKTPGRTQLINFFE--V-NDKLRLVDL 77 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-ccc---------------ccCCCCceeEEEEEe--c-CCeEEEeCC
Confidence 345566788999999999999999999972110 000 011124454433322 2 468999999
Q ss_pred CCCCC----------cHHHHHHHHHhc---CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 163 PGHVD----------FTLEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 163 PG~~~----------f~~~~~~~l~~~---D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
||+.. +......+++.+ +++++|+|+..+......+++..+...++|+++++||+|+...
T Consensus 78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 78 PGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKK 150 (196)
T ss_pred CCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCH
Confidence 99642 223333444443 6788999998877777666777777889999999999998643
No 186
>PLN03110 Rab GTPase; Provisional
Probab=99.66 E-value=1.9e-15 Score=147.19 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=80.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|+.|+|||||+++|+...... ++ ....|++.....+.+......++||||||+..
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-------------~~---~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~ 73 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL-------------ES---KSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC-------------CC---CCceeEEEEEEEEEECCEEEEEEEEECCCcHH
Confidence 346799999999999999999997221100 00 00112222222222322346899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCcc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRL 220 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~ 220 (571)
|.......++.+|++|+|+|..+....+....| ..+.. .++|+++|+||+|+.
T Consensus 74 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred HHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 988888999999999999999875444444333 33332 478999999999974
No 187
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.66 E-value=1.8e-15 Score=147.49 Aligned_cols=117 Identities=24% Similarity=0.189 Sum_probs=80.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|..|+|||||+++++. +..... .....|+++.............+.+|||||+.+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~--~~f~~~--------------~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhh--CCCCCc--------------cCCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 3457899999999999999999872 211110 001123333322222223457899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHH--hcCCCeEEEEecCCcc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD--KYGVPRICFVNKMDRL 220 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~--~~~~p~ivviNK~D~~ 220 (571)
|......+++.+|++|+|+|.++....+....|. .+. ..++|+++|+||+|+.
T Consensus 75 ~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 9888888899999999999999765555444442 222 2478999999999974
No 188
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.66 E-value=1.8e-15 Score=141.71 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=74.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++++..... . .+.+ ..|.........+......++||||||+.+|...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~--~-----------~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD--K-----------NYKA---TIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI 65 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--C-----------CCCC---ceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh
Confidence 5899999999999999999832110 0 0000 0111222222222223467999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHhc----CCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWR-QADKY----GVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~~----~~p~ivviNK~D~~~ 221 (571)
....++.+|++++|+|+.+.........|. .+.+. ..|+++|.||+|+..
T Consensus 66 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCc
Confidence 889999999999999997643333333332 23222 256899999999753
No 189
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.66 E-value=6.4e-16 Score=127.53 Aligned_cols=83 Identities=33% Similarity=0.596 Sum_probs=76.5
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCC---ceeecceEEEeccCceeecCeecCCCEEEEeCCCCccc
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT 466 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~ 466 (571)
|.++|||+..|++.|+++|+|||+|+|++||.|++...+ ..+++++++.++|.+..+++++.||||+++.|++++.+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~~ 80 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDITI 80 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCcc
Confidence 468999999999999999999999999999999977653 35789999999999999999999999999999999999
Q ss_pred cceecC
Q 008294 467 GETLCD 472 (571)
Q Consensus 467 Gdtl~~ 472 (571)
||||++
T Consensus 81 Gdtl~~ 86 (86)
T cd03691 81 GDTICD 86 (86)
T ss_pred cceecC
Confidence 999963
No 190
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.66 E-value=4.7e-16 Score=140.74 Aligned_cols=97 Identities=20% Similarity=0.138 Sum_probs=66.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC----C
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV----D 167 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~----~ 167 (571)
+|+++|++|+|||||+++|.... . .+ ..|+ .+.+.. .+|||||+. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~---~------------~~-------~~t~-----~~~~~~---~~iDt~G~~~~~~~ 51 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE---I------------LY-------KKTQ-----AVEYND---GAIDTPGEYVENRR 51 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc---c------------cc-------ccce-----eEEEcC---eeecCchhhhhhHH
Confidence 68999999999999999996110 0 00 0011 122222 689999983 2
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+...+...++.+|++++|+|+.++...+....+.. .+.|.++|+||+|+..
T Consensus 52 ~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 52 LYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAE 102 (142)
T ss_pred HHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCC
Confidence 33334456789999999999998776655433322 2459999999999753
No 191
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=1.7e-15 Score=159.11 Aligned_cols=117 Identities=21% Similarity=0.289 Sum_probs=81.2
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTPG~ 165 (571)
.+-+..|+|||.+|||||||+|+|. +....... ..++|.......+.+.+ ..+.|+||||+
T Consensus 156 lk~iadValVG~PNaGKSTLln~Lt---~~k~~vs~---------------~p~TT~~p~~Giv~~~~~~~i~~vDtPGi 217 (390)
T PRK12298 156 LKLLADVGLLGLPNAGKSTFIRAVS---AAKPKVAD---------------YPFTTLVPNLGVVRVDDERSFVVADIPGL 217 (390)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHh---CCcccccC---------------CCCCccCcEEEEEEeCCCcEEEEEeCCCc
Confidence 3445689999999999999999996 22222111 13456666666666664 46999999998
Q ss_pred CC-------cHHHHHHHHHhcCeEEEEEeCCC----CCchhHHHHHHHHHhc-----CCCeEEEEecCCccc
Q 008294 166 VD-------FTLEVERALRVLDGAICLFDSVA----GVEPQSETVWRQADKY-----GVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~-------f~~~~~~~l~~~D~~ilVvda~~----g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~ 221 (571)
.+ ....+.+.+..+|++++|||+.. ....+....++.+..+ +.|.++|+||+|+..
T Consensus 218 ~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 218 IEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred cccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence 64 33456678899999999999872 1122223344444443 689999999999854
No 192
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.66 E-value=3.5e-15 Score=145.12 Aligned_cols=109 Identities=17% Similarity=0.097 Sum_probs=77.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++|+... ... + ..|+........+..+.+.||||||+..|...
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~--f~~------------~-------~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l 60 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERR--FKD------------T-------VSTVGGAFYLKQWGPYNISIWDTAGREQFHGL 60 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCC------------C-------CCccceEEEEEEeeEEEEEEEeCCCcccchhh
Confidence 68999999999999999997221 100 0 00222222223345678999999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHh---cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETV-WRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
....++.+|++|+|+|+++......... |..+.. .++|+++|.||+|+..
T Consensus 61 ~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 61 GSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 8889999999999999987544444332 333332 3689999999999864
No 193
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.65 E-value=2.5e-15 Score=140.23 Aligned_cols=113 Identities=17% Similarity=0.139 Sum_probs=75.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||++++..... .. .+.+ ..+... .....+......+.+|||||+.+|...
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~--~~-----------~~~~---t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 65 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF--IE-----------SYDP---TIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAM 65 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--Cc-----------ccCC---cchheE-EEEEEECCEEEEEEEEeCCCcccchhh
Confidence 689999999999999999972221 10 0000 001010 111112223367899999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-----HHHHhcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-----RQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-----~~~~~~~~p~ivviNK~D~~~ 221 (571)
....++.+|++++|+|..+....+....| +.....++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 66 RELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120 (168)
T ss_pred hHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc
Confidence 99999999999999999865433332222 212234799999999999753
No 194
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.65 E-value=6.6e-16 Score=127.31 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=74.3
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEe-C---CCCcc
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTI 465 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~-g---l~~~~ 465 (571)
|.++|||+.+|++.|+++++|||+|+|++||.|++...++.+++++|+.+ +.+..+++++.||||+++. | ++++.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~-~~~~~~~~~~~aGdI~~v~~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIF-RPEMTPTDELSAGQVGYIIAGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEE-CCCccCCceECCCCEEEEEccccccCccc
Confidence 57999999999999999999999999999999999887778999999955 7778999999999999995 3 67788
Q ss_pred ccceecC
Q 008294 466 TGETLCD 472 (571)
Q Consensus 466 ~Gdtl~~ 472 (571)
+|||||+
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03699 80 VGDTITL 86 (86)
T ss_pred cccEeeC
Confidence 9999974
No 195
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=4.8e-15 Score=134.61 Aligned_cols=125 Identities=22% Similarity=0.210 Sum_probs=99.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcce-eeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~-~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTPG~~~ 167 (571)
..+|+++|..++||||++.++.+....... .++-..+ ...|.+|+.....++...+ +.+.|.|||||.+
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~---------k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R 80 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSG---------KGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER 80 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeecccccccc---------ccccceeEeecccceEEcCcceEEEecCCCcHH
Confidence 468999999999999999999744331111 0000000 0034578888888887766 8999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcC-CCeEEEEecCCccccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG-VPRICFVNKMDRLGAN 223 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~-~p~ivviNK~D~~~~~ 223 (571)
|.-.+.-..+.++++|++||++.+.....+++++.+...+ +|++|++||.|+..+.
T Consensus 81 F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ 137 (187)
T COG2229 81 FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDAL 137 (187)
T ss_pred HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCC
Confidence 9999999999999999999999988887788888888887 9999999999998764
No 196
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.65 E-value=1.7e-15 Score=140.75 Aligned_cols=112 Identities=22% Similarity=0.266 Sum_probs=73.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC-cHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-FTL 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~-f~~ 170 (571)
+|+++|.+|+|||||+++++... .. +.. ..+. + +.......+......+.+|||||+.. +..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~--~~~-~~t~-----------~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 63 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FI--GEY-DPNL-----------E-SLYSRQVTIDGEQVSLEILDTAGQQQADTE 63 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cc--ccc-CCCh-----------H-HhceEEEEECCEEEEEEEEECCCCcccccc
Confidence 48999999999999999997311 10 110 0000 0 11111222333445789999999985 455
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH-----hcCCCeEEEEecCCcc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD-----KYGVPRICFVNKMDRL 220 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~-----~~~~p~ivviNK~D~~ 220 (571)
.....++.+|++|+|+|+.+.........| ..+. ..++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 64 QLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred hHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 677889999999999999876444433332 2222 2379999999999974
No 197
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.65 E-value=2.7e-15 Score=138.99 Aligned_cols=116 Identities=15% Similarity=0.109 Sum_probs=76.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-ecCeEEEEEcCCCCCCcHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~liDTPG~~~f~~ 170 (571)
+|+++|.+|+|||||+++|........ +.. ....|..+......+. .....+.+|||||+..|..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~--~~~------------~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 67 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFP--KNY------------LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSD 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcC--ccC------------CCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHH
Confidence 689999999999999999973211110 000 0001222222222222 2447899999999998888
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|.++.........| ..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 888899999999999999865333322333 22332 3689999999999754
No 198
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=3.8e-15 Score=135.79 Aligned_cols=118 Identities=18% Similarity=0.177 Sum_probs=90.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+++++|..++|||+|+++++|.......... -|+.+-+..+.+....++++||||+|+++|
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqAT----------------IGiDFlskt~~l~d~~vrLQlWDTAGQERF 84 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQAT----------------IGIDFLSKTMYLEDRTVRLQLWDTAGQERF 84 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccce----------------eeeEEEEEEEEEcCcEEEEEEEecccHHHH
Confidence 3478999999999999999999977654332221 255666666666667889999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhc----CCCeEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY----GVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~----~~p~ivviNK~D~~~~ 222 (571)
...+-.++|.+.++|+|+|.++--.......| +.++.. ++-+++|.||.||...
T Consensus 85 rslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 85 RSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred hhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 99999999999999999999876554433333 444433 2446678999999765
No 199
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.65 E-value=1.2e-15 Score=163.81 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=84.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+|+|+.. ..... ....|+|.+.....+.+++..+++|||||+.++.
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~---~~a~v--------------~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~ 277 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGE---ERAIV--------------TDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD 277 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCccc--------------CCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc
Confidence 468999999999999999999721 11111 1124556666666677788999999999998754
Q ss_pred HH--------HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 170 LE--------VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~--------~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.. ....++.+|++++|+|++++........|.. ..++|+++|+||+|+..
T Consensus 278 ~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 278 DEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTG 335 (449)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccc
Confidence 32 3446788999999999998776665555554 45789999999999854
No 200
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.65 E-value=3.3e-15 Score=145.35 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=74.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee---cCeEEEEEcCCCCCCc
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---NKHRINIIDTPGHVDF 168 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---~~~~i~liDTPG~~~f 168 (571)
+|+++|.+|+|||||+++|+..... . .+ ...++.+.....+.. ....++||||||+..|
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~--~-----------~~-----~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~ 63 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFG--K-----------SY-----KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG 63 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC--C-----------CC-----CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH
Confidence 6899999999999999999722110 0 00 011122222222222 2478999999999988
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh------cCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~------~~~p~ivviNK~D~~~ 221 (571)
.......++.+|++|+|+|+++.........| ..+.. .+.|+++|+||+|+..
T Consensus 64 ~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 64 GKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 88888899999999999999875433333333 23322 2357889999999853
No 201
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.65 E-value=2.9e-15 Score=155.49 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=76.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~ 167 (571)
..++|+++|.+|+|||||+|+|+ +... .... ..+.|.+.....+.+ ++..+.||||||+.+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~---~~~~-~v~~--------------~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~ 249 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALT---GADV-YAAD--------------QLFATLDPTTRRLDLPDGGEVLLTDTVGFIR 249 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh---CCce-eecc--------------CCccccCCEEEEEEeCCCceEEEEecCcccc
Confidence 45889999999999999999996 2111 1110 123344444445555 567999999999832
Q ss_pred -c-------HHHHHHHHHhcCeEEEEEeCCCCCchhHHH----HHHHHHhcCCCeEEEEecCCccc
Q 008294 168 -F-------TLEVERALRVLDGAICLFDSVAGVEPQSET----VWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 -f-------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~----~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
. ...+...+..+|++++|+|+++........ .+..+...++|+++|+||+|+..
T Consensus 250 ~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 250 DLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred cCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 1 112334578899999999998765443332 23333334789999999999753
No 202
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.65 E-value=8.1e-16 Score=140.16 Aligned_cols=113 Identities=27% Similarity=0.306 Sum_probs=77.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~f 168 (571)
++|+++|++|+|||||+++|+... . +.+...+++.......+..++ +.+.+|||||+.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 63 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK----F--------------ITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY 63 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC----C--------------cCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc
Confidence 589999999999999999997221 0 111123455555554455666 78999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
........+.++.++.++|.... ...+...++..+.. ++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 64 RAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDA 123 (161)
T ss_pred hHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcc
Confidence 77777777777777777776543 22233333333333 8899999999998653
No 203
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=1.2e-15 Score=162.77 Aligned_cols=119 Identities=19% Similarity=0.254 Sum_probs=82.2
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
...+-+..|+|||.+|||||||+|+|. +....+.. ..++|+......+.+.+..++|+||||
T Consensus 154 leLk~~adV~LVG~PNAGKSTLln~Ls---~akpkIad---------------ypfTTl~P~lGvv~~~~~~f~laDtPG 215 (500)
T PRK12296 154 LELKSVADVGLVGFPSAGKSSLISALS---AAKPKIAD---------------YPFTTLVPNLGVVQAGDTRFTVADVPG 215 (500)
T ss_pred EEecccceEEEEEcCCCCHHHHHHHHh---cCCccccc---------------cCcccccceEEEEEECCeEEEEEECCC
Confidence 445567899999999999999999996 22222211 135577777777777889999999999
Q ss_pred CCCc-------HHHHHHHHHhcCeEEEEEeCCCC---Cch-hHHH-HHHHH--------------HhcCCCeEEEEecCC
Q 008294 165 HVDF-------TLEVERALRVLDGAICLFDSVAG---VEP-QSET-VWRQA--------------DKYGVPRICFVNKMD 218 (571)
Q Consensus 165 ~~~f-------~~~~~~~l~~~D~~ilVvda~~g---~~~-~~~~-~~~~~--------------~~~~~p~ivviNK~D 218 (571)
+.+- ..+..+.+..+|++|+|||++.. ..+ .... +...+ ...++|+++|+||+|
T Consensus 216 liegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiD 295 (500)
T PRK12296 216 LIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKID 295 (500)
T ss_pred CccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECcc
Confidence 7542 23456677889999999999742 111 1111 11122 124689999999999
Q ss_pred ccc
Q 008294 219 RLG 221 (571)
Q Consensus 219 ~~~ 221 (571)
++.
T Consensus 296 L~d 298 (500)
T PRK12296 296 VPD 298 (500)
T ss_pred chh
Confidence 864
No 204
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.65 E-value=7.7e-15 Score=138.03 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+.++++... .. ++.+ ..|..... ...+....+.++||||||+.+|..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~-----------~~~p---t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PS-----------EYVP---TVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 64 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CC-----------CCCC---ceeeeeEE-EEEECCEEEEEEEEECCCccchhh
Confidence 4799999999999999999973211 10 0000 00111110 111222236789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHH-HHH-HHHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSET-VWR-QADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~-~~~~--~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++|+|+|.++........ .|. .+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 65 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred hhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 7778899999999999998765444432 342 2322 3689999999999754
No 205
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.64 E-value=3.4e-15 Score=143.24 Aligned_cols=112 Identities=17% Similarity=0.144 Sum_probs=71.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCCcH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~f~ 169 (571)
+|+++|.+|+|||||+++++... ... . + ...++.......+.+++ +.++||||||+.+|.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~--f~~--~---------~-----~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~ 63 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE--FPE--E---------Y-----IPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP 63 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC--CCc--c---------c-----CCccccccceeEEEECCEEEEEEEEeCCCcccCC
Confidence 68999999999999999997321 110 0 0 00111111111222334 678899999987642
Q ss_pred ----HH----HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH------hcCCCeEEEEecCCccc
Q 008294 170 ----LE----VERALRVLDGAICLFDSVAGVEPQSETVW-RQAD------KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ----~~----~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~------~~~~p~ivviNK~D~~~ 221 (571)
.+ ...+++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+..
T Consensus 64 ~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 64 GTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred ccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 11 34567899999999999876444433333 2222 24689999999999854
No 206
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.64 E-value=4.7e-15 Score=139.83 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
++|+++|++|+|||||+++++..... +...+ +. +... .....+...++.+.+|||||+.+|..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~----~~~~~-t~-----------~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~ 64 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV----ESYYP-TI-----------ENTF-SKIIRYKGQDYHLEIVDTAGQDEYSI 64 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc----cccCc-ch-----------hhhE-EEEEEECCEEEEEEEEECCChHhhHH
Confidence 68999999999999999999732110 10000 00 0000 01111111346789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHH----hcCCCeEEEEecCCcc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETV-WRQAD----KYGVPRICFVNKMDRL 220 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~----~~~~p~ivviNK~D~~ 220 (571)
.....+..+|++++|+|..+....+.... +..+. ..++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 65 LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 88889999999999999987544333322 23222 2468999999999975
No 207
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.64 E-value=3.2e-15 Score=154.61 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=95.5
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
...+..+++|+|.||+|||||+|+|+ +....+.+.- .|+|.+.-...+..+++.+.++||+|.
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~---~~d~AIVTdI--------------~GTTRDviee~i~i~G~pv~l~DTAGi 275 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALL---GRDRAIVTDI--------------AGTTRDVIEEDINLNGIPVRLVDTAGI 275 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHh---cCCceEecCC--------------CCCccceEEEEEEECCEEEEEEecCCc
Confidence 34456789999999999999999997 3333333322 577999999999999999999999998
Q ss_pred CCcHH--------HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 166 VDFTL--------EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~--------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.+-.. .....+..||.+++|+|++.+.......++. +...+.|+++|+||+|+...
T Consensus 276 Ret~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 276 RETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred ccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccc
Confidence 76422 2455788999999999999987777777766 66678999999999998764
No 208
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=6.5e-15 Score=136.90 Aligned_cols=120 Identities=19% Similarity=0.132 Sum_probs=93.0
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+.+....|.++|.+|+|||+++.++...+........ -|+......+.+......+++|||.|+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sT----------------iGIDFk~kti~l~g~~i~lQiWDtaGQ 71 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFIST----------------IGIDFKIKTIELDGKKIKLQIWDTAGQ 71 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccce----------------EEEEEEEEEEEeCCeEEEEEEEEcccc
Confidence 4566889999999999999999999744432222211 355666666666666788999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHH-H---hcCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA-D---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~-~---~~~~p~ivviNK~D~~~ 221 (571)
..|...+..+++.|+++++|+|.+..........|... . ..++|.++|.||+|+..
T Consensus 72 erf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 72 ERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred hhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 99999999999999999999999987666655555332 2 23789999999999865
No 209
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.64 E-value=4.2e-15 Score=139.19 Aligned_cols=113 Identities=14% Similarity=0.070 Sum_probs=74.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|++|+|||||+++++........... ..........+....+.+.+|||||+.+|...
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t-----------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 64 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPT-----------------VFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL 64 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-----------------eeeeeEEEEEECCEEEEEEEEeCCCccccccc
Confidence 6899999999999999999732211000000 00011111222223456889999999998877
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHH-HH-HHHH--hcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSET-VW-RQAD--KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~-~~-~~~~--~~~~p~ivviNK~D~~~ 221 (571)
....++.+|++++|+|..+.-..+... .| ..+. ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 65 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRD 118 (174)
T ss_pred ccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhc
Confidence 777889999999999998754433331 22 2222 35799999999999854
No 210
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.64 E-value=3.7e-15 Score=159.13 Aligned_cols=116 Identities=19% Similarity=0.144 Sum_probs=87.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|++|+|||||+|+|+.....+ .. ...|+|.+.....+.+++..+++|||||+.+
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai---vs--------------~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~ 263 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAI---VS--------------DIKGTTRDVVEGDFELNGILIKLLDTAGIRE 263 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcc---cC--------------CCCCcEEEEEEEEEEECCEEEEEeeCCCccc
Confidence 345689999999999999999997321111 01 1246677777777788899999999999976
Q ss_pred cHHH--------HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 FTLE--------VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~--------~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+... ...+++.+|++++|+|++++...... .+..+...++|+++|+||+|+..
T Consensus 264 ~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 264 HADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKI 324 (442)
T ss_pred chhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCC
Confidence 5432 34577889999999999987665554 45555556899999999999854
No 211
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.64 E-value=2.6e-15 Score=144.00 Aligned_cols=109 Identities=25% Similarity=0.275 Sum_probs=76.5
Q ss_pred EcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHH
Q 008294 96 MAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERA 175 (571)
Q Consensus 96 vG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~ 175 (571)
+|..|+|||||++++++ +.... .+. ..-|++.......+......+.||||||+.+|...+..+
T Consensus 1 vG~~~vGKTsLi~r~~~--~~f~~-----------~~~---~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~ 64 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT--GEFEK-----------KYV---ATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGY 64 (200)
T ss_pred CCCCCCCHHHHHHHHhc--CCCCC-----------CCC---CceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHH
Confidence 69999999999999972 21110 000 011223322222222345789999999999999989999
Q ss_pred HHhcCeEEEEEeCCCCCchhHHHHHHH-HHh--cCCCeEEEEecCCcc
Q 008294 176 LRVLDGAICLFDSVAGVEPQSETVWRQ-ADK--YGVPRICFVNKMDRL 220 (571)
Q Consensus 176 l~~~D~~ilVvda~~g~~~~~~~~~~~-~~~--~~~p~ivviNK~D~~ 220 (571)
++.+|++|+|+|.++.........|.. +.+ .++|+++|+||+|+.
T Consensus 65 ~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 65 YIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred hcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999999999999998766555544533 333 478999999999974
No 212
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=4.5e-15 Score=156.67 Aligned_cols=117 Identities=20% Similarity=0.253 Sum_probs=80.1
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-CeEEEEEcCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPG 164 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~liDTPG 164 (571)
..+-+..|+++|.+|||||||+++|. +...+.+. . .++|.......+.+. +..++|+||||
T Consensus 154 elk~~adVglVG~pNaGKSTLLn~Lt---~ak~kIa~-y--------------pfTTl~PnlG~v~~~~~~~~~laD~PG 215 (424)
T PRK12297 154 ELKLLADVGLVGFPNVGKSTLLSVVS---NAKPKIAN-Y--------------HFTTLVPNLGVVETDDGRSFVMADIPG 215 (424)
T ss_pred eecccCcEEEEcCCCCCHHHHHHHHH---cCCCcccc-C--------------CcceeceEEEEEEEeCCceEEEEECCC
Confidence 34445689999999999999999996 22222211 1 244666666666665 78899999999
Q ss_pred CCC-------cHHHHHHHHHhcCeEEEEEeCCCC--Cch--hHHHHHHHHHh-----cCCCeEEEEecCCcc
Q 008294 165 HVD-------FTLEVERALRVLDGAICLFDSVAG--VEP--QSETVWRQADK-----YGVPRICFVNKMDRL 220 (571)
Q Consensus 165 ~~~-------f~~~~~~~l~~~D~~ilVvda~~g--~~~--~~~~~~~~~~~-----~~~p~ivviNK~D~~ 220 (571)
+.. ......+.+..+|++|+|||+++. ..+ ....+...+.. .++|.++|+||+|+.
T Consensus 216 liega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 216 LIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred CcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 854 234456667789999999999743 122 22233344443 378999999999974
No 213
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.64 E-value=5.6e-15 Score=134.69 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=81.3
Q ss_pred EEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-CeEEEEEcCCCCCCcH----
Q 008294 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVDFT---- 169 (571)
Q Consensus 95 ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~liDTPG~~~f~---- 169 (571)
++|++|+|||||+++|+...... .....+.|.......+.+. ...+.+|||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~ 63 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI-----------------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGR 63 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc-----------------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchh
Confidence 58999999999999997221110 0111233444444444443 6789999999988764
Q ss_pred ---HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 170 ---LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ---~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
......++.+|++++|+|+..................++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 64 EREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE 119 (163)
T ss_pred hHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh
Confidence 34556789999999999999887777766566777789999999999998653
No 214
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.64 E-value=3.4e-15 Score=140.45 Aligned_cols=114 Identities=22% Similarity=0.202 Sum_probs=84.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|..|+|||||+++|. .+..... .-|.......+.+++..+++||.+|+..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~--~~~~~~~-------------------~pT~g~~~~~i~~~~~~~~~~d~gG~~~ 70 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLK--NGEISET-------------------IPTIGFNIEEIKYKGYSLTIWDLGGQES 70 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHH--SSSEEEE-------------------EEESSEEEEEEEETTEEEEEEEESSSGG
T ss_pred CcEEEEEEECCCccchHHHHHHhh--hcccccc-------------------CcccccccceeeeCcEEEEEEecccccc
Confidence 567899999999999999999996 2221111 1144444556667899999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCc-hhHHHHHHHH-H---hcCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVE-PQSETVWRQA-D---KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~-~~~~~~~~~~-~---~~~~p~ivviNK~D~~~~ 222 (571)
+...+..++..+|++|+|||+++.-. ....+.+..+ . ..++|+++++||.|+.++
T Consensus 71 ~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 71 FRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp GGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred ccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 88888899999999999999986321 2233333332 2 247899999999998764
No 215
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.64 E-value=4.4e-15 Score=159.77 Aligned_cols=111 Identities=24% Similarity=0.333 Sum_probs=90.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH-
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~- 169 (571)
.+||++|++|+|||||+|+| +|...+.|.+ .|+|+......+..+++.+.++|.||..++.
T Consensus 4 ~~valvGNPNvGKTtlFN~L---TG~~q~VgNw---------------pGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~ 65 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNAL---TGANQKVGNW---------------PGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTA 65 (653)
T ss_pred ceEEEecCCCccHHHHHHHH---hccCceecCC---------------CCeeEEEEEEEEEecCceEEEEeCCCcCCCCC
Confidence 46999999999999999999 5877777765 5899999999999999999999999976641
Q ss_pred -----HHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 170 -----LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 -----~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.-+..++. ..|++|.|+||++ -.....+..++.+.++|+++++|++|...
T Consensus 66 ~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~ 122 (653)
T COG0370 66 YSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAK 122 (653)
T ss_pred CCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHH
Confidence 11333333 4599999999976 45566666788899999999999999653
No 216
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.63 E-value=5.6e-16 Score=151.57 Aligned_cols=156 Identities=17% Similarity=0.274 Sum_probs=117.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhc-eeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERG-ITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g-~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
...+.|+++|++|+|||||+++|+...... .. ....| +++ +...+.+++++||||+.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~----------~~------~~~~g~i~i------~~~~~~~i~~vDtPg~~ 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ----------NI------SDIKGPITV------VTGKKRRLTFIECPNDI 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccC----------cc------ccccccEEE------EecCCceEEEEeCCchH
Confidence 445789999999999999999997331110 00 01122 111 22367889999999964
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEE-EEecCCcccc--chhhhHHHHHHHhCCcce---
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGA--NFFRTRDMIVTNLGAKPL--- 240 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iv-viNK~D~~~~--~~~~~~~~i~~~l~~~~~--- 240 (571)
..+...++.+|.+++|+|+..+...++..++..+...++|.++ |+||+|+... ...++.+++++.+.....
T Consensus 95 ---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ 171 (225)
T cd01882 95 ---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGA 171 (225)
T ss_pred ---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCC
Confidence 5677788999999999999999999999999999989999655 9999999642 345666677665442221
Q ss_pred ---------eeeccCCCCCCcceeeecccceeEEecC
Q 008294 241 ---------VVQLPVGAEDNFKGVVDLVKMKAIIWSG 268 (571)
Q Consensus 241 ---------~~~~pi~~~~~~~~~id~~~~~~~~~~~ 268 (571)
|+++|.++..+|.+.++++.++++.|..
T Consensus 172 ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~ 208 (225)
T cd01882 172 KLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRN 208 (225)
T ss_pred cEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeec
Confidence 4567888889999999999999999965
No 217
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.63 E-value=5.9e-15 Score=140.89 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=75.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++|+...... +. + ....|.+.......+......+++|||||+.+|...
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~---~~---------~---~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 66 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV---GP---------Y---QNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAM 66 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC---cC---------c---ccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 68999999999999999997321110 00 0 000122222222223223356789999999988777
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhc--CCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY--GVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~--~~p~ivviNK~D~~~ 221 (571)
....++.+|++++|+|.++.........| ..+... ++|+++|+||+|+..
T Consensus 67 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 67 SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccc
Confidence 77788899999999999875333322222 333332 689999999999754
No 218
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.63 E-value=7.1e-15 Score=135.12 Aligned_cols=111 Identities=19% Similarity=0.180 Sum_probs=74.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCCCCcH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFT 169 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~~~f~ 169 (571)
+|+++|++|+|||||+++|+.... ... +.+. +.......+..+ .+.+++|||||+.++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~----~~~---------~~~~------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 61 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF----VEE---------YDPT------IEDSYRKTIVVDGETYTLDILDTAGQEEFS 61 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC----CcC---------cCCC------hhHeEEEEEEECCEEEEEEEEECCChHHHH
Confidence 489999999999999999973211 000 0000 001111122223 4678999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhH-HHHHHHHHh----cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|..+...... ...+..+.. .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 62 AMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 888899999999999999976432222 222333322 4799999999999754
No 219
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=5.4e-15 Score=140.64 Aligned_cols=114 Identities=16% Similarity=0.198 Sum_probs=76.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++|+... ... .+ ....|.+.......+......+.+|||||+.+|...
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~--~~~-----------~~---~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~ 65 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDE--FSE-----------ST---KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSL 65 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC-----------CC---CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhh
Confidence 68999999999999999997211 100 00 001122222222333233467899999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
....++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 66 NNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN 119 (188)
T ss_pred HHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc
Confidence 89999999999999999875443333333 22222 3578999999999753
No 220
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.63 E-value=5.4e-15 Score=139.98 Aligned_cols=113 Identities=20% Similarity=0.256 Sum_probs=74.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++++.... .. ++. ...|..+......+......+.+|||+|+..|...
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f--~~-----------~~~---~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~ 65 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF--DE-----------DYI---QTLGVNFMEKTISIRGTEITFSIWDLGGQREFINM 65 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC-----------CCC---CccceEEEEEEEEECCEEEEEEEEeCCCchhHHHh
Confidence 689999999999999999973211 10 000 01122222222222223467899999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
...+++.+|++++|+|+++.........| ..++. ...| ++|+||+|+..
T Consensus 66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFA 118 (182)
T ss_pred hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccc
Confidence 88899999999999999875444333233 23332 2455 78899999853
No 221
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.63 E-value=5.8e-15 Score=138.03 Aligned_cols=119 Identities=13% Similarity=0.015 Sum_probs=77.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|..|+|||||+++++. +... ... ...+ .|.........+......+++|||+|...
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~--~~f~-~~~-~~~T-----------~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 66 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG--RSFS-LNA-YSPT-----------IKPRYAVNTVEVYGQEKYLILREVGEDEV 66 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhC--CCCC-ccc-CCCc-----------cCcceEEEEEEECCeEEEEEEEecCCccc
Confidence 3578999999999999999999972 2111 000 0000 11111112222222336788999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHH-hcCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD-KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~-~~~~p~ivviNK~D~~~ 221 (571)
+......+++.+|++++|+|+++....... ..+..+. ..++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 67 AILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred ccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccc
Confidence 887778888999999999999775322222 2222222 23799999999999753
No 222
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.63 E-value=7.3e-15 Score=145.57 Aligned_cols=113 Identities=19% Similarity=0.122 Sum_probs=73.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++++. +.... . ... +.. ........+....+.++||||+|+.+|...
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~--~~f~~--~-y~p-Ti~-----------d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~ 64 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLG--GRFEE--Q-YTP-TIE-----------DFHRKLYSIRGEVYQLDILDTSGNHPFPAM 64 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHc--CCCCC--C-CCC-Chh-----------HhEEEEEEECCEEEEEEEEECCCChhhhHH
Confidence 689999999999999999972 21110 0 000 000 011111222223478899999999998877
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHh------------cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETV-WRQADK------------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~------------~~~p~ivviNK~D~~~ 221 (571)
...++..+|++|+|+|.++....+.... +..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 65 RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 7778889999999999987543332222 222221 3689999999999853
No 223
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.62 E-value=9.3e-15 Score=138.75 Aligned_cols=113 Identities=12% Similarity=-0.005 Sum_probs=74.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-ecCeEEEEEcCCCCCCcHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~liDTPG~~~f~~ 170 (571)
+|+++|..|+|||||+++|+.......... + .+.... ...... .....+.+|||||+.+|..
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~-----t-----------~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~ 64 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVP-----T-----------VFENYV-TNIQGPNGKIIELALWDTAGQEEYDR 64 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCC-----e-----------eeeeeE-EEEEecCCcEEEEEEEECCCchhHHH
Confidence 689999999999999999973211100000 0 000110 011111 1245789999999999888
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHH-HHH-HHH--hcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSET-VWR-QAD--KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~-~~~--~~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++|+|+|+++........ .|. ... ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 65 LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence 7777889999999999998754443332 232 222 24789999999999754
No 224
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.62 E-value=5.8e-15 Score=138.21 Aligned_cols=110 Identities=18% Similarity=0.185 Sum_probs=73.1
Q ss_pred EEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-CeEEEEEcCCCCCCc-----
Q 008294 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVDF----- 168 (571)
Q Consensus 95 ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~liDTPG~~~f----- 168 (571)
++|++|+|||||+++|... ....+ ...+.|.......+.++ +..+++|||||+.+.
T Consensus 1 iiG~~~~GKStll~~l~~~---~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 62 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNA---KPKVA---------------NYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGR 62 (176)
T ss_pred CCCCCCCcHHHHHHHHhcC---Ccccc---------------CCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCC
Confidence 5899999999999999721 11111 11234555555556667 889999999998442
Q ss_pred --HHHHHHHHHhcCeEEEEEeCCCCC-----ch-hHH-HHHHHHH----------hcCCCeEEEEecCCcccc
Q 008294 169 --TLEVERALRVLDGAICLFDSVAGV-----EP-QSE-TVWRQAD----------KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 --~~~~~~~l~~~D~~ilVvda~~g~-----~~-~~~-~~~~~~~----------~~~~p~ivviNK~D~~~~ 222 (571)
.......++.+|++++|+|+.+.. .. ... .....+. ..++|+++|+||+|+...
T Consensus 63 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 135 (176)
T cd01881 63 GLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA 135 (176)
T ss_pred CccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence 234556788899999999998763 11 111 1222221 147999999999998643
No 225
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.62 E-value=9.2e-15 Score=139.26 Aligned_cols=115 Identities=15% Similarity=0.062 Sum_probs=75.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
++|+++|..|+|||||+++++. +.... .+.+ ..+... .....+......++||||||+.+|..
T Consensus 1 ~kivivG~~~vGKTsli~~~~~--~~~~~-----------~~~~---t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~ 63 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTR--GYFPQ-----------VYEP---TVFENY-VHDIFVDGLHIELSLWDTAGQEEFDR 63 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCC-----------ccCC---cceeee-EEEEEECCEEEEEEEEECCCChhccc
Confidence 4799999999999999999972 21110 0000 001111 01112222346799999999999877
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHH-HH-HHHHh--cCCCeEEEEecCCcccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSET-VW-RQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~-~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
....+++.+|++|+|+|..+....+... .| ..+.. .++|+++|+||+|+...
T Consensus 64 l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 64 LRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 7777889999999999998754444332 22 33333 37899999999998654
No 226
>PLN03108 Rab family protein; Provisional
Probab=99.62 E-value=1.2e-14 Score=140.78 Aligned_cols=117 Identities=16% Similarity=0.120 Sum_probs=79.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
...+|+++|+.|+|||||+++|+........ . ...|.+.......+......+++|||||+..|
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~--~--------------~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~ 68 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--D--------------LTIGVEFGARMITIDNKPIKLQIWDTAGQESF 68 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCC--C--------------CCccceEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 3578999999999999999999732111000 0 01122222222333223456889999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHH---hcCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~---~~~~p~ivviNK~D~~~ 221 (571)
.......++.+|++|+|+|+++....+....|. .+. ..++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 69 RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 888888999999999999998754444332332 222 23689999999999754
No 227
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.62 E-value=1.4e-14 Score=134.22 Aligned_cols=114 Identities=21% Similarity=0.205 Sum_probs=74.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++++. +..... + ....|.........+......+.+|||||+.+|...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~--~~~~~~-----------~---~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTD--NEFHSS-----------H---ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhc--CCCCCC-----------C---CCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhh
Confidence 689999999999999999972 211100 0 000121222222222222367899999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (571)
....++.+|++++|+|..+.-.......| ..+. ..++|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 88899999999999999864333333222 2222 23689999999999754
No 228
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.62 E-value=7.8e-15 Score=136.74 Aligned_cols=114 Identities=15% Similarity=0.014 Sum_probs=74.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++|+...-....... ..........+......+.+|||||+.+|...
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 64 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPT-----------------VFDNYSATVTVDGKQVNLGLWDTAGQEEYDRL 64 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-----------------eeeeeEEEEEECCEEEEEEEEeCCCccccccc
Confidence 6899999999999999999732110000000 00001111122234567999999999988666
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHH--HHHHHHHh--cCCCeEEEEecCCcccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
....++.+|++++|+|+.+....... ..+..+.. .++|+++|+||+|+...
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 65 RPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDD 119 (171)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhc
Confidence 66677899999999999864333222 22233332 36999999999998654
No 229
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.61 E-value=1e-14 Score=141.51 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-ecCeEEEEEcCCCCCCcH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~liDTPG~~~f~ 169 (571)
.+|+++|..|+|||||+++|+... ...... ...|.......+.+. .....+++|||||+..|.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~--~~~~~~--------------~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~ 66 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGR--FAEVSD--------------PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR 66 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCCCC--------------ceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH
Confidence 689999999999999999997321 111000 001111111111111 123679999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
......++.+|++|+|+|.++.........| ..+. ....|+++|.||+|+..
T Consensus 67 ~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 67 SITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred HHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 8888899999999999999874332222222 2222 23467788999999754
No 230
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.61 E-value=1.4e-14 Score=138.26 Aligned_cols=114 Identities=15% Similarity=0.057 Sum_probs=77.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+.+++.... .. .+.+ .-|.... ....+......++||||||+.+|..
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f--~~-----------~~~~---t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~ 66 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF--PK-----------EYIP---TVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDR 66 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC--Cc-----------CCCC---ceEeeeE-EEEEECCEEEEEEEEECCCchhhhh
Confidence 5799999999999999999973221 10 0000 0011111 1112222346789999999999998
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHH-HHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSET-VWRQ-ADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~-~~~--~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++|+|+|.++........ .|.. +.. .++|+++|.||.|+..
T Consensus 67 l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 67 LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 8888999999999999998755444432 3432 222 4789999999999854
No 231
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.61 E-value=1.4e-14 Score=136.10 Aligned_cols=114 Identities=15% Similarity=0.074 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+.+++... ... ++.+. .+... .....+......++||||||+.+|..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~--f~~-----------~~~~t---~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA--FPG-----------EYIPT---VFDNY-SANVMVDGKPVNLGLWDTAGQEDYDR 64 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCC-----------cCCCc---ceeee-EEEEEECCEEEEEEEEECCCchhhhh
Confidence 478999999999999999997321 110 00000 00000 01112222346789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++|+|+|.++....+.. ..| ..+.. .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 65 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 888889999999999999875444443 223 22222 3689999999999854
No 232
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=8.1e-15 Score=133.75 Aligned_cols=116 Identities=18% Similarity=0.177 Sum_probs=82.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..++|||||+-++..... ... .|..-|..+-...+.+.....++.||||+|+++|.
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F--~e~--------------~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQF--HEN--------------IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYH 68 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCcc--ccc--------------cccccccEEEEEEEEeCCcEEEEEEEEcCCccccc
Confidence 46899999999999999999973221 110 12223333333334443345788899999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhcCCC---eEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKYGVP---RICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~~~p---~ivviNK~D~~~ 221 (571)
+..-.++|.|+++|+|+|.++.-..+....| ..+.+..-| +.+|.||+|+..
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 9999999999999999999986666665555 334333223 345799999865
No 233
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.61 E-value=1.4e-14 Score=136.23 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..++|||+|+.+++. +.... ++.+ .-|.+.. ....+......++||||+|+.+|..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~--~~f~~-----------~~~~---Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~ 64 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS--NKFPT-----------DYIP---TVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNR 64 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc--CCCCC-----------CCCC---cceeeeE-EEEEECCEEEEEEEEECCCCccccc
Confidence 4799999999999999999983 21111 0000 0011111 1122222347889999999999998
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++|+|+|.++....+.. ..| ..++. .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 65 LRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred cchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 888899999999999999876555443 233 33332 3789999999999854
No 234
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.60 E-value=1.3e-14 Score=135.83 Aligned_cols=112 Identities=15% Similarity=0.046 Sum_probs=72.8
Q ss_pred EEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHHH
Q 008294 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEV 172 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~ 172 (571)
|+++|..|+|||||+++++.......... + .+ ........+......+.+|||||+.+|....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~-----~-----------~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 63 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVP-----T-----------VF-ENYSADVEVDGKPVELGLWDTAGQEDYDRLR 63 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCC-----c-----------EE-eeeeEEEEECCEEEEEEEEECCCCcccchhc
Confidence 57999999999999999973221100000 0 00 0001111122233568999999999988877
Q ss_pred HHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 173 ERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 173 ~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
...++.+|++|+|+|.++....... ..| ..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 64 PLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 7788999999999999865333322 122 23332 3799999999999864
No 235
>PRK11058 GTPase HflX; Provisional
Probab=99.60 E-value=2.3e-14 Score=152.22 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=77.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVD 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTPG~~~ 167 (571)
..+.|+++|.+|+|||||+|+|. +..... . ...+.|++.....+.+.+ ..+.||||||+.+
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt---~~~~~v-~--------------~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r 257 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRIT---EARVYA-A--------------DQLFATLDPTLRRIDVADVGETVLADTVGFIR 257 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh---CCceee-c--------------cCCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence 34789999999999999999996 221111 0 112345555545555544 3889999999854
Q ss_pred c--------HHHHHHHHHhcCeEEEEEeCCCCCchhHH----HHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 F--------TLEVERALRVLDGAICLFDSVAGVEPQSE----TVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f--------~~~~~~~l~~~D~~ilVvda~~g~~~~~~----~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
. ...+...++.+|++++|+|+++....... ..+..+...++|+++|+||+|+..
T Consensus 258 ~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 258 HLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred cCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 2 11234556889999999999886543332 233444445799999999999853
No 236
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.60 E-value=9.8e-15 Score=161.36 Aligned_cols=105 Identities=24% Similarity=0.288 Sum_probs=78.0
Q ss_pred cCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH-----
Q 008294 97 AHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE----- 171 (571)
Q Consensus 97 G~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~----- 171 (571)
|.+|+|||||+|+|. |.....+. .+|+|++.....+.+++..+++|||||+.++...
T Consensus 1 G~pNvGKSSL~N~Lt---g~~~~v~n---------------~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~ 62 (591)
T TIGR00437 1 GNPNVGKSTLFNALT---GANQTVGN---------------WPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEE 62 (591)
T ss_pred CCCCCCHHHHHHHHh---CCCCeecC---------------CCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHH
Confidence 899999999999995 32222211 2578888888888888899999999999887432
Q ss_pred HHH-HH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 172 VER-AL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~-~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+.+ .+ ..+|++++|+|+++. ........++.+.++|+++|+||+|+..
T Consensus 63 v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 63 VARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAE 113 (591)
T ss_pred HHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHH
Confidence 122 22 368999999999873 2334445566678999999999999753
No 237
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.60 E-value=1.4e-14 Score=135.79 Aligned_cols=114 Identities=16% Similarity=0.051 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
++|+++|+.|+|||||+++++.......... + .+... .....+......+.+|||||+.+|..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~------t----------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVP------T----------VFENY-VADIEVDGKQVELALWDTAGQEDYDR 64 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCC------c----------cccce-EEEEEECCEEEEEEEEeCCCchhhhh
Confidence 5799999999999999999973211100000 0 00011 11122222345789999999998877
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|..+....... ..| ..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 65 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred ccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 666788899999999999754322222 222 22222 3789999999999864
No 238
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.59 E-value=6.1e-15 Score=123.41 Aligned_cols=82 Identities=30% Similarity=0.410 Sum_probs=74.7
Q ss_pred eEEEEEEEeecC-CCceEEEEEEecceeCCCCEEEeCC---------CCceeecceEEEeccCceeecCeecCCCEEEEe
Q 008294 390 FAGLAFKIMSDP-FVGSLTFVRVYAGTLSAGSYVLNAN---------KGKKERIGRLLEMHANSREDVKVALAGDIIALA 459 (571)
Q Consensus 390 ~~~~V~k~~~d~-~~G~i~~~rV~sG~l~~gd~v~~~~---------~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~ 459 (571)
++++|||+..++ +.|+++++|||+|+|+.||.|++.. ....+++++|+.++|.++.++++|.|||||+|.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 478999999999 8999999999999999999998765 344588999999999999999999999999999
Q ss_pred CCCCccccceec
Q 008294 460 GLKDTITGETLC 471 (571)
Q Consensus 460 gl~~~~~Gdtl~ 471 (571)
|++++..||+.+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 999999998753
No 239
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.59 E-value=3.7e-14 Score=134.19 Aligned_cols=114 Identities=14% Similarity=0.043 Sum_probs=77.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..++|||||+.+++.... .. ++.+ ..+.... ....+......+.||||+|+..|.
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f--~~-----------~~~p---T~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~ 67 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF--PE-----------NYVP---TVFENYT-ASFEIDTQRIELSLWDTSGSPYYD 67 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--CC-----------ccCC---ceeeeeE-EEEEECCEEEEEEEEECCCchhhH
Confidence 46799999999999999999973221 10 0000 0011111 112222234679999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCcc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRL 220 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~ 220 (571)
.....+++.+|++|+|+|.++....... ..| ..++. .+.|+++|.||+|+.
T Consensus 68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 8888889999999999999876554443 334 23332 268999999999974
No 240
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.58 E-value=3.3e-14 Score=133.26 Aligned_cols=113 Identities=15% Similarity=0.032 Sum_probs=74.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+++++|..|+|||||+.+++.... .. ++.+ .+.........+......+.+|||||+.+|...
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~--~~-----------~~~~----t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 64 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY--PT-----------EYVP----TAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC-----------CCCC----ceeeeeeEEEEECCEEEEEEEEECCCChhhccc
Confidence 689999999999999999973211 00 0000 010111111222223467889999999998877
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHH--HHHHHHHh--cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~--~~~p~ivviNK~D~~~ 221 (571)
...+++.+|++|+|+|..+....+.. ..+..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 65 RPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRT 118 (173)
T ss_pred cccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhcc
Confidence 77788999999999999875443332 22333333 3689999999999853
No 241
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.57 E-value=1.6e-14 Score=121.04 Aligned_cols=80 Identities=24% Similarity=0.296 Sum_probs=69.9
Q ss_pred eEEEEEEEeecCCC-ceEEEEEEecceeCCCCEEEeCCC---------CceeecceEEEeccCceeecCeecCCCEEEEe
Q 008294 390 FAGLAFKIMSDPFV-GSLTFVRVYAGTLSAGSYVLNANK---------GKKERIGRLLEMHANSREDVKVALAGDIIALA 459 (571)
Q Consensus 390 ~~~~V~k~~~d~~~-G~i~~~rV~sG~l~~gd~v~~~~~---------~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~ 459 (571)
++++|||+..+|+. |+++++|||||+|++||.|++... ...++|++|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 47899999999997 679999999999999999986321 13578999999999999999999999999999
Q ss_pred CCCCccccce
Q 008294 460 GLKDTITGET 469 (571)
Q Consensus 460 gl~~~~~Gdt 469 (571)
|+++..++.+
T Consensus 81 gl~~~~~~~~ 90 (94)
T cd04090 81 GIDSSIVKTA 90 (94)
T ss_pred CcchheeceE
Confidence 9998665444
No 242
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.56 E-value=6.5e-14 Score=132.09 Aligned_cols=114 Identities=14% Similarity=0.059 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+++++.... .. ++.+. .+.... ....+......+++|||+|+..|..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f--~~-----------~~~~t---~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~ 64 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY--PE-----------TYVPT---VFENYT-ASFEIDEQRIELSLWDTSGSPYYDN 64 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--CC-----------CcCCc---eEEEEE-EEEEECCEEEEEEEEECCCchhhhh
Confidence 3699999999999999999973211 00 00000 011110 1122222346789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++|+|+|.++....... ..| ..+++ .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 65 VRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred cchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence 778889999999999999876554442 334 23332 3789999999999853
No 243
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.56 E-value=5.8e-14 Score=137.14 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=70.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++++ .+..... .+.+ ..+.........+......+++|||||+..+..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~--~~~~~~~----------~~~~---t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~- 65 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFT--SGEYDDH----------AYDA---SGDDDTYERTVSVDGEESTLVVIDHWEQEMWTE- 65 (221)
T ss_pred EEEEECCCCCcHHHHHHHHh--cCCcCcc----------CcCC---CccccceEEEEEECCEEEEEEEEeCCCcchHHH-
Confidence 68999999999999999996 2211100 0000 001011112222333457899999999984322
Q ss_pred HHHHHH-hcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCccc
Q 008294 172 VERALR-VLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~-~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
...++ .+|++++|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 66 -~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 66 -DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred -hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 33455 89999999999875433322 22333333 4689999999999754
No 244
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.56 E-value=1.1e-13 Score=127.86 Aligned_cols=110 Identities=20% Similarity=0.246 Sum_probs=74.5
Q ss_pred EEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc----
Q 008294 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF---- 168 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f---- 168 (571)
|+++|++|+|||||++.|+..... ... +...+.|...... .++ ..+.+|||||+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~-~~~---------------~~~~~~t~~~~~~--~~~-~~~~~~D~~g~~~~~~~~ 62 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL-ART---------------SKTPGKTQLINFF--NVN-DKFRLVDLPGYGYAKVSK 62 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce-eee---------------cCCCCcceeEEEE--Ecc-CeEEEecCCCccccccCH
Confidence 789999999999999999621111 000 0112333332222 222 38999999998663
Q ss_pred ------HHHHHHHHH---hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 169 ------TLEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ------~~~~~~~l~---~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
...+...+. .++++++|+|..........+.++.+...+.|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~ 124 (170)
T cd01876 63 EVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLK 124 (170)
T ss_pred HHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 222223333 35789999999887777777788888888999999999999854
No 245
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.56 E-value=9.2e-14 Score=136.01 Aligned_cols=115 Identities=13% Similarity=0.050 Sum_probs=77.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||+|+.+++.... .. ++.+ ..|..... ...+......+.||||+|+.+|.
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F--~~-----------~y~p---Ti~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~ 75 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCY--PE-----------TYVP---TVFENYTA-GLETEEQRVELSLWDTSGSPYYD 75 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCC--CC-----------CcCC---ceeeeeEE-EEEECCEEEEEEEEeCCCchhhH
Confidence 45799999999999999999973211 10 0000 00111111 12222345679999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhH-HHHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQS-ETVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
.....+++.+|++|+|+|.++...... ...| ..+.. .++|+++|+||+|+..
T Consensus 76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 131 (232)
T cd04174 76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 888889999999999999987655443 2333 33332 3689999999999743
No 246
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.55 E-value=2.9e-14 Score=126.98 Aligned_cols=97 Identities=23% Similarity=0.194 Sum_probs=67.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC----CC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG----HV 166 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG----~~ 166 (571)
++|.+||.+|+|||||+++|. |..... .-|... . +.=++||||| +.
T Consensus 2 krimliG~~g~GKTTL~q~L~---~~~~~~-------------------~KTq~i-----~---~~~~~IDTPGEyiE~~ 51 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALN---GEEIRY-------------------KKTQAI-----E---YYDNTIDTPGEYIENP 51 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHc---CCCCCc-------------------Ccccee-----E---ecccEEECChhheeCH
Confidence 579999999999999999995 211000 011111 1 1225699999 33
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
.|..........||.+++|.|+++.... .--..+..++.|+|-||||+|+.
T Consensus 52 ~~y~aLi~ta~dad~V~ll~dat~~~~~---~pP~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 52 RFYHALIVTAQDADVVLLLQDATEPRSV---FPPGFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred HHHHHHHHHHhhCCEEEEEecCCCCCcc---CCchhhcccCCCEEEEEECccCc
Confidence 4666677777899999999999875332 11234556789999999999998
No 247
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.53 E-value=7.5e-14 Score=125.62 Aligned_cols=109 Identities=23% Similarity=0.202 Sum_probs=76.2
Q ss_pred EEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeE-eeceEEEe--ecCeEEEEEcCCCCCCcHHH
Q 008294 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITI-TSAATTTY--WNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 95 ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~-~~~~~~~~--~~~~~i~liDTPG~~~f~~~ 171 (571)
++|++|+|||||+++|......... ...|. ......+. ..+..+.+|||||+.++...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 61 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEE-------------------YETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSL 61 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcc-------------------cccchhheeeEEEEECCEEEEEEEEecCChHHHHhH
Confidence 5899999999999999732221000 00111 11111111 23678999999999998888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-----HHHHhcCCCeEEEEecCCcccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-----RQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-----~~~~~~~~p~ivviNK~D~~~~ 222 (571)
....++.+|++++|+|+.++........+ ......++|+++|+||+|+...
T Consensus 62 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 62 RRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 88889999999999999987655554433 3344568999999999998653
No 248
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.52 E-value=1.1e-13 Score=121.97 Aligned_cols=116 Identities=17% Similarity=0.194 Sum_probs=89.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|.+||.+|+|||+|+-+++.++....... .-|+.+......+..+..++.||||+|+++|.
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~----------------tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFR 74 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPT----------------TIGVDFKVKVMQVDGKRLKLAIWDTAGQERFR 74 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCc----------------eeeeeEEEEEEEEcCceEEEEEEeccchHhhh
Confidence 47899999999999999999974333211111 13666777777777778899999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHH-HHh----cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQ-ADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~-~~~----~~~p~ivviNK~D~~~ 221 (571)
..+..++|.|.++|+|+|.+...+....++|.. +.. .++-.++|.||+|+..
T Consensus 75 tLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 75 TLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred ccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 999999999999999999997666666677743 222 2455678999999653
No 249
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.52 E-value=2.3e-13 Score=132.50 Aligned_cols=114 Identities=16% Similarity=0.083 Sum_probs=76.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+.++..... .. ++.+. .+.... ....+......+.||||+|+..|..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f--~~-----------~y~pT---i~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~ 64 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--PG-----------SYVPT---VFENYT-ASFEIDKRRIELNMWDTSGSSYYDN 64 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CC-----------ccCCc---cccceE-EEEEECCEEEEEEEEeCCCcHHHHH
Confidence 4789999999999999999973211 10 00000 011111 1112222346789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHH-HHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQ-ADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~-~~~--~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++|+|+|.++....... ..|.. ... .++|+++|+||+|+..
T Consensus 65 l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 65 VRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred HhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 888899999999999999876444333 33432 222 4789999999999854
No 250
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.5e-13 Score=124.31 Aligned_cols=117 Identities=18% Similarity=0.152 Sum_probs=86.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..++.++|..|+|||.|+-++......... + -.-|+......+++..+..++++|||.||+.|.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~h-----d-----------~TiGvefg~r~~~id~k~IKlqiwDtaGqe~fr 69 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVH-----D-----------LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFR 69 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccc-----c-----------ceeeeeeceeEEEEcCceEEEEEEecCCcHHHH
Confidence 457889999999999999999733221111 1 113555555556666677889999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~~ 222 (571)
..+..+++.+-++|||+|.+..........| ..+++ .++-++++.||+|+...
T Consensus 70 sv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 70 SVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred HHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 9999999999999999999876555555554 33333 35667888999998653
No 251
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.52 E-value=4.2e-13 Score=130.55 Aligned_cols=116 Identities=21% Similarity=0.159 Sum_probs=78.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
...+|+++|+.|+|||||+++++. |....... ...|..+.........+...+++|||+|+.+|
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~--~~~~~~~~--------------~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~ 71 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLT--GEFEKKYI--------------PTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF 71 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHh--CCCCCCCC--------------CccceEEEEEEEEECCeEEEEEEEECCCchhh
Confidence 346899999999999999998762 22111000 01122222222222335678999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHH-HH--hcCCCeEEEEecCCcc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ-AD--KYGVPRICFVNKMDRL 220 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~-~~--~~~~p~ivviNK~D~~ 220 (571)
.......++.+|++++|+|.++.........|.. +. ..++|+++++||+|+.
T Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 72 GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 8777788889999999999987665554443321 11 2478999999999974
No 252
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.51 E-value=5.3e-13 Score=123.37 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=68.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+.+++. +..... +.+. .+ .. ...+.+......+.+|||+|+.+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~--~~f~~~-----------~~~~---~~-~~-~~~i~~~~~~~~l~i~D~~g~~~---- 59 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLT--GSYVQL-----------ESPE---GG-RF-KKEVLVDGQSHLLLIRDEGGAPD---- 59 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHh--CCCCCC-----------CCCC---cc-ce-EEEEEECCEEEEEEEEECCCCCc----
Confidence 689999999999999999973 211100 0000 01 11 11122222236689999999975
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHh----cCCCeEEEEecCCcc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETV-WRQADK----YGVPRICFVNKMDRL 220 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~----~~~p~ivviNK~D~~ 220 (571)
...++.+|++++|+|.++....+.... +..+.. .++|+++|.||+|+.
T Consensus 60 -~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 60 -AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred -hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 245678999999999998666555333 333332 357999999999963
No 253
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.51 E-value=1.9e-13 Score=119.33 Aligned_cols=106 Identities=21% Similarity=0.308 Sum_probs=78.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcc-eeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc--
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNY-KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~-~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f-- 168 (571)
.|+++|.+|+|||||+|+|+ +... ..+. ..+.|.......+.+.+..+.|+||||..+-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~---~~~~~~~~~---------------~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~ 62 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALT---GKKLAKVSN---------------IPGTTRDPVYGQFEYNNKKFILVDTPGINDGES 62 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHH---TSTSSEESS---------------STTSSSSEEEEEEEETTEEEEEEESSSCSSSSH
T ss_pred CEEEECCCCCCHHHHHHHHh---ccccccccc---------------cccceeeeeeeeeeeceeeEEEEeCCCCcccch
Confidence 48999999999999999997 2211 1111 1244555544555668889999999998652
Q ss_pred -------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEec
Q 008294 169 -------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNK 216 (571)
Q Consensus 169 -------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK 216 (571)
.......+..+|++++|+|+.+........+++.++ .+.|+++|+||
T Consensus 63 ~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 63 QDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred hhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 223555667889999999988855556677777776 88999999998
No 254
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.50 E-value=2.3e-13 Score=133.30 Aligned_cols=119 Identities=20% Similarity=0.315 Sum_probs=85.0
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeE-EEEEcCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHR-INIIDTPG 164 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~-i~liDTPG 164 (571)
..+.+..|++||.+|||||||+++|. .+..+++.+. -+|+.....+..++++. +++-|.||
T Consensus 192 ELKsiadvGLVG~PNAGKSTLL~als---~AKpkVa~Ya---------------FTTL~P~iG~v~yddf~q~tVADiPG 253 (366)
T KOG1489|consen 192 ELKSIADVGLVGFPNAGKSTLLNALS---RAKPKVAHYA---------------FTTLRPHIGTVNYDDFSQITVADIPG 253 (366)
T ss_pred EeeeecccceecCCCCcHHHHHHHhh---ccCCcccccc---------------eeeeccccceeeccccceeEeccCcc
Confidence 34556789999999999999999995 4445555431 23666666666665554 99999999
Q ss_pred CCC-------cHHHHHHHHHhcCeEEEEEeCCCCC--c--hhHHHHHHHHHhc-----CCCeEEEEecCCcccc
Q 008294 165 HVD-------FTLEVERALRVLDGAICLFDSVAGV--E--PQSETVWRQADKY-----GVPRICFVNKMDRLGA 222 (571)
Q Consensus 165 ~~~-------f~~~~~~~l~~~D~~ilVvda~~g~--~--~~~~~~~~~~~~~-----~~p~ivviNK~D~~~~ 222 (571)
... ..-...+.+..++..++|||.+.+. . .+-..++..+..+ ..|.+||+||+|.+.+
T Consensus 254 iI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 254 IIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA 327 (366)
T ss_pred ccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH
Confidence 765 2445677888899999999998762 2 2233344444433 5799999999998643
No 255
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.50 E-value=4e-13 Score=132.14 Aligned_cols=147 Identities=15% Similarity=0.239 Sum_probs=93.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc---
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF--- 168 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f--- 168 (571)
+|+++|.+|+|||||+++|. |.....+.. .+.|.......+.+++..+++|||||+.+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Lt---g~~~~v~~~---------------~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~ 63 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLT---NTKSEVAAY---------------EFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAAD 63 (233)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCccccCC---------------CCccccceEEEEEECCeEEEEEECCCccccccc
Confidence 58999999999999999996 332221111 233555555566678899999999998643
Q ss_pred ----HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC------CeE----------EEEecCCccccchhhhH
Q 008294 169 ----TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV------PRI----------CFVNKMDRLGANFFRTR 228 (571)
Q Consensus 169 ----~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~------p~i----------vviNK~D~~~~~~~~~~ 228 (571)
..+....++.+|++++|+|+.+.. .+.......+...++ |.+ -+.++.|+...+. +.+
T Consensus 64 ~~~~~~~~l~~~~~ad~il~V~D~t~~~-~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~-~~v 141 (233)
T cd01896 64 GKGRGRQVIAVARTADLILMVLDATKPE-GHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDE-KTI 141 (233)
T ss_pred chhHHHHHHHhhccCCEEEEEecCCcch-hHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCH-HHH
Confidence 345667889999999999997633 244445566655443 221 2334666665543 455
Q ss_pred HHHHHHhCCcceeeeccCCCCCCcceeeeccc
Q 008294 229 DMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVK 260 (571)
Q Consensus 229 ~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~ 260 (571)
..+.+.++.+...+ -+..+-....++|.+.
T Consensus 142 ~~~l~~~~i~~~~v--~~~~~~~~~~~~~~~~ 171 (233)
T cd01896 142 KAILREYKIHNADV--LIREDITVDDLIDVIE 171 (233)
T ss_pred HHHHHHhCeeeEEE--EEccCCCHHHHHHHHh
Confidence 66777777765544 3344444455555544
No 256
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.50 E-value=3.2e-13 Score=119.75 Aligned_cols=114 Identities=24% Similarity=0.272 Sum_probs=86.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|.|+|..|+||||++++|+ +.... ++ .-|+.....++.++++.+++||..|+..
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~---~~~~~--------~i----------~pt~gf~Iktl~~~~~~L~iwDvGGq~~ 72 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLL---GEDTD--------TI----------SPTLGFQIKTLEYKGYTLNIWDVGGQKT 72 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhc---CCCcc--------cc----------CCccceeeEEEEecceEEEEEEcCCcch
Confidence 345689999999999999999996 21100 00 1155555667788999999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchh-HHHHHH----HHHhcCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWR----QADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~----~~~~~~~p~ivviNK~D~~~~ 222 (571)
+..-+..++..+|+.|+|||+.+....+ +...+. .-+..+.|++++.||.|+.++
T Consensus 73 lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 73 LRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred hHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence 9999999999999999999998654332 222222 223457899999999998754
No 257
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=2.4e-13 Score=125.86 Aligned_cols=120 Identities=14% Similarity=0.113 Sum_probs=91.8
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
..+...+|++||.+++|||-|+.++..+........ .-|+.+......++.+..+.+||||+|+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~Sks----------------TIGvef~t~t~~vd~k~vkaqIWDTAGQ 73 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKS----------------TIGVEFATRTVNVDGKTVKAQIWDTAGQ 73 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCccccc----------------ceeEEEEeeceeecCcEEEEeeecccch
Confidence 345578899999999999999999963322211111 1355666666666666778899999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
++|...+..+++.|-++++|+|.+...+......| ..++. .++++++|.||+|+..
T Consensus 74 ERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 74 ERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred hhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 99999999999999999999999877766665555 45554 3788999999999854
No 258
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.49 E-value=3e-13 Score=130.31 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe--ecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY--WNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~--~~~~~i~liDTPG~~~f 168 (571)
++|+++|++|+|||||+++|..... .. + +. .++.......+. ..+..+.|||||||.++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~--~~-------t-~~---------s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~ 61 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY--RS-------T-VT---------SIEPNVATFILNSEGKGKKFRLVDVPGHPKL 61 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC--CC-------c-cC---------cEeecceEEEeecCCCCceEEEEECCCCHHH
Confidence 4799999999999999999973211 00 0 00 001111111111 24678999999999999
Q ss_pred HHHHHHHHHhc-CeEEEEEeCCCCCch--hHHHHHH----HHH--hcCCCeEEEEecCCccccc
Q 008294 169 TLEVERALRVL-DGAICLFDSVAGVEP--QSETVWR----QAD--KYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 169 ~~~~~~~l~~~-D~~ilVvda~~g~~~--~~~~~~~----~~~--~~~~p~ivviNK~D~~~~~ 223 (571)
.......++.+ +++|+|+|+...... ...+.+. ... ..++|+++|+||+|+..+.
T Consensus 62 ~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 62 RDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred HHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 99999999998 999999999875311 1112221 111 2489999999999997654
No 259
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.48 E-value=5.7e-13 Score=127.45 Aligned_cols=67 Identities=19% Similarity=0.144 Sum_probs=48.7
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HH-HHHHh--cCCCeEEEEecCCccc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
....++||||+|+.+. ....+++.+|++|+|+|.++........ .| ..++. .++|+++|+||+|+..
T Consensus 64 ~~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 64 VSVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred EEEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 3578999999999763 2344678999999999998765544332 34 33332 3689999999999854
No 260
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.48 E-value=1.6e-13 Score=123.94 Aligned_cols=117 Identities=17% Similarity=0.124 Sum_probs=82.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
...+|.++|.+|+|||+|+|++.+.......... -|..+-...+.+...-..++||||+|+++|
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaT----------------IgadFltKev~Vd~~~vtlQiWDTAGQERF 71 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKAT----------------IGADFLTKEVQVDDRSVTLQIWDTAGQERF 71 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccc----------------cchhheeeEEEEcCeEEEEEEEecccHHHh
Confidence 3578999999999999999999844321111000 122222223333334467899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH--HHHh------cCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWR--QADK------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~--~~~~------~~~p~ivviNK~D~~~ 221 (571)
...-...+|.+|.+++|+|....-.....+.|+ .+.. ...|+||+.||+|..+
T Consensus 72 qsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 72 QSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred hhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 999899999999999999998765555555553 2222 2568999999999865
No 261
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.47 E-value=7.1e-13 Score=122.46 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=77.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..++|||||+++|..... .. ++. ...|................+.|||++|+.+|...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~--~~-----------~~~---~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 64 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF--PE-----------NYI---PTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSL 64 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST--TS-----------SSE---TTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc--cc-----------ccc---ccccccccccccccccccccccccccccccccccc
Confidence 589999999999999999973221 10 000 01123333333333334567999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHH---hcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWR-QAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~---~~~~p~ivviNK~D~~~ 221 (571)
....++.+|++|+|+|.++.........|. .+. ..+.|++++.||.|+..
T Consensus 65 ~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 65 RDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence 888899999999999998644333333332 222 22578999999999764
No 262
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.47 E-value=3e-13 Score=117.45 Aligned_cols=112 Identities=21% Similarity=0.245 Sum_probs=83.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
..+.++|..++|||||+|... +|...+ .-+-|+......+..++..+.+||.||+..|..
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia--~g~~~e------------------dmiptvGfnmrk~tkgnvtiklwD~gGq~rfrs 80 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIA--RGQYLE------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 80 (186)
T ss_pred eeEEEEeeccCCcceEEEEEe--eccchh------------------hhcccccceeEEeccCceEEEEEecCCCccHHH
Confidence 478899999999999999875 221111 012244445555666788999999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCC--chhHHHHHHHHH---hcCCCeEEEEecCCcccc
Q 008294 171 EVERALRVLDGAICLFDSVAGV--EPQSETVWRQAD---KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~--~~~~~~~~~~~~---~~~~p~ivviNK~D~~~~ 222 (571)
.+.++.+.++++++||||.+.- +..-.++...+. -.++|+++..||+|++++
T Consensus 81 mWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 81 MWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred HHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc
Confidence 9999999999999999998632 222223333333 358999999999999876
No 263
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=8.2e-13 Score=114.72 Aligned_cols=117 Identities=18% Similarity=0.089 Sum_probs=86.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..++.|+|...+|||+|+-+.+.......-.. .-|+......+.-..+..++++|||.|++.+.
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvs----------------TvGidFKvKTvyr~~kRiklQiwDTagqEryr 84 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVS----------------TVGIDFKVKTVYRSDKRIKLQIWDTAGQERYR 84 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceee----------------eeeeeEEEeEeeecccEEEEEEEecccchhhh
Confidence 45899999999999999998863322211111 12555555443333355789999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHH----hcCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD----KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (571)
..+-.++|.++++|+++|.++.......+-|.... ..+.|+|+|.||+|+...
T Consensus 85 tiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 85 TITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE 141 (193)
T ss_pred HHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccc
Confidence 99999999999999999999866655555554332 348999999999998654
No 264
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.46 E-value=7.4e-13 Score=125.90 Aligned_cols=114 Identities=14% Similarity=0.066 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+++|.. +....... .+. +... .....+......+++|||||+.+|..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~--~~~~~~~~----~t~----------~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~ 64 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTL--GEFPEEYH----PTV----------FENY-VTDCRVDGKPVQLALWDTAGQEEYER 64 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCcccC----Ccc----------cceE-EEEEEECCEEEEEEEEECCCChhccc
Confidence 4799999999999999999962 21111000 000 0000 01111221235688999999988765
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHH-HH-HHHHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSET-VW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|........... .| ..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 65 LRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 5455678899999999997643333221 23 33322 3689999999999753
No 265
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=3.9e-13 Score=122.50 Aligned_cols=114 Identities=24% Similarity=0.218 Sum_probs=87.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+.-.+|.++|--+|||||++..|- .+.+... --|+....-.+.+++.++++||..|+..
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk--~~E~vtt-------------------vPTiGfnVE~v~ykn~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLK--LGEIVTT-------------------VPTIGFNVETVEYKNISFTVWDVGGQEK 73 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeec--cCCcccC-------------------CCccccceeEEEEcceEEEEEecCCCcc
Confidence 445689999999999999999883 2211111 1166666777788899999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCC--chhHHHHHHHHHh---cCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGV--EPQSETVWRQADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~--~~~~~~~~~~~~~---~~~p~ivviNK~D~~~~ 222 (571)
+..-+..+++..+++|+|||+++.. ...-.++.+.+.. .+.|++++.||.|++++
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc
Confidence 9999999999999999999998642 2333344444443 37899999999998875
No 266
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.46 E-value=1.1e-12 Score=125.80 Aligned_cols=114 Identities=21% Similarity=0.280 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH-
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~- 169 (571)
++|+++|.+|+|||||+|+|+....... .....++|.........+.+.++++|||||..+..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~----------------~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~ 64 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFES----------------KLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV 64 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccc----------------ccCCCCcccccceeeEEECCeEEEEEECcCCCCccC
Confidence 4799999999999999999972211100 01124667777777777899999999999988752
Q ss_pred ------HHHHHHH----HhcCeEEEEEeCCCCCchhHHHHHHHHHhc-C----CCeEEEEecCCccc
Q 008294 170 ------LEVERAL----RVLDGAICLFDSVAGVEPQSETVWRQADKY-G----VPRICFVNKMDRLG 221 (571)
Q Consensus 170 ------~~~~~~l----~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~----~p~ivviNK~D~~~ 221 (571)
.++.+.+ ...|++++|+|+.. +.......++.+.+. + .++++++|+.|...
T Consensus 65 ~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 65 SPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 2222222 34699999999987 777777777777653 2 57889999999764
No 267
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=1.6e-12 Score=125.72 Aligned_cols=118 Identities=21% Similarity=0.195 Sum_probs=82.7
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.+...||.++|.+|+|||||+|+|+.... .....+..|+ .+. ......+++..++||||||+.
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~--~~v~~vg~~t--------------~~~-~~~~~~~~~~~l~lwDtPG~g 98 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEV--KEVSKVGVGT--------------DIT-TRLRLSYDGENLVLWDTPGLG 98 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccC--ceeeecccCC--------------Cch-hhHHhhccccceEEecCCCcc
Confidence 44567888999999999999999983222 1111111111 000 011112355789999999998
Q ss_pred C-------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCCeEEEEecCCccc
Q 008294 167 D-------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~-------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~ivviNK~D~~~ 221 (571)
| +.......+...|++++++|+.+.....++..++..... +.++++++|.+|+..
T Consensus 99 dg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 99 DGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAE 162 (296)
T ss_pred cchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhc
Confidence 8 555577788899999999999988777788887766543 479999999999754
No 268
>COG2262 HflX GTPases [General function prediction only]
Probab=99.44 E-value=2.5e-12 Score=130.98 Aligned_cols=120 Identities=16% Similarity=0.144 Sum_probs=81.5
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-CeEEEEEcCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTP 163 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~liDTP 163 (571)
.....++.|+++|.+|||||||+|+|. +..... +...-.|.+...-.+.+. +..+.+-||-
T Consensus 187 R~~~~~p~vaLvGYTNAGKSTL~N~LT---~~~~~~---------------~d~LFATLdpttR~~~l~~g~~vlLtDTV 248 (411)
T COG2262 187 RSRSGIPLVALVGYTNAGKSTLFNALT---GADVYV---------------ADQLFATLDPTTRRIELGDGRKVLLTDTV 248 (411)
T ss_pred hcccCCCeEEEEeeccccHHHHHHHHh---ccCeec---------------cccccccccCceeEEEeCCCceEEEecCc
Confidence 344568999999999999999999995 221110 001122555555555555 6899999999
Q ss_pred CCCCc--------HHHHHHHHHhcCeEEEEEeCCCCCc-hhHHHHHHHHH---hcCCCeEEEEecCCcccc
Q 008294 164 GHVDF--------TLEVERALRVLDGAICLFDSVAGVE-PQSETVWRQAD---KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 164 G~~~f--------~~~~~~~l~~~D~~ilVvda~~g~~-~~~~~~~~~~~---~~~~p~ivviNK~D~~~~ 222 (571)
|+.+- ...+......+|++++|||+++..- .+.......+. ...+|+++|.||+|+...
T Consensus 249 GFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 249 GFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED 319 (411)
T ss_pred cCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc
Confidence 98762 2334555677899999999998632 22223333333 357899999999997643
No 269
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.43 E-value=2.7e-12 Score=123.09 Aligned_cols=114 Identities=15% Similarity=0.087 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCCcH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFT 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~f~ 169 (571)
.+|+++|.+|+|||||+|+|+.... ...+....+ . ..+|.... .+.. ....+.+|||||+.+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~--~~~~~~~~~-----~------~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~ 66 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH--EEEGAAPTG-----V------VETTMKRT--PYPHPKFPNVTLWDLPGIGSTA 66 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC--CCCCccccC-----c------cccccCce--eeecCCCCCceEEeCCCCCccc
Confidence 4799999999999999999972110 001111111 0 00111111 1111 13478999999987542
Q ss_pred HHHHH-----HHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 170 LEVER-----ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~-----~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
..... .+..+|++++|.| ..+.......+..+...+.|+++|+||+|+..
T Consensus 67 ~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 67 FPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchh
Confidence 22222 2456788888754 35677777788888888999999999999843
No 270
>PRK09866 hypothetical protein; Provisional
Probab=99.43 E-value=2.3e-12 Score=138.30 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=57.6
Q ss_pred CeEEEEEcCCCCCC-----cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcC--CCeEEEEecCCccc
Q 008294 154 KHRINIIDTPGHVD-----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG--VPRICFVNKMDRLG 221 (571)
Q Consensus 154 ~~~i~liDTPG~~~-----f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~--~p~ivviNK~D~~~ 221 (571)
..++.|+||||... +...+..++..+|.+++|+|+..+....++.+++.+++.+ .|+++|+||+|+..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQD 303 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCC
Confidence 46899999999754 3445677899999999999999888888888888888877 49999999999753
No 271
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.3e-12 Score=112.55 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=86.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
-..++.++|+.|.|||.|+.+++.......... .-|+.+....++...+..+++||||+|+++|
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssH----------------TiGveFgSrIinVGgK~vKLQIWDTAGQErF 71 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSH----------------TIGVEFGSRIVNVGGKTVKLQIWDTAGQERF 71 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccc----------------eeeeeecceeeeecCcEEEEEEeecccHHHH
Confidence 356889999999999999999985433221111 1255555555555556788999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHH---hcCCCeEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD---KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~---~~~~p~ivviNK~D~~~~ 222 (571)
...+..+++.|-++++|.|++..........|. .++ ..++-++++.||-|+...
T Consensus 72 RSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 72 RSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred HHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 999999999999999999998765555544442 233 345556777899998654
No 272
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.39 E-value=3.4e-12 Score=126.30 Aligned_cols=116 Identities=21% Similarity=0.269 Sum_probs=82.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC-
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~- 167 (571)
..++|+|.|++|+|||||++++. ++.....+. +-+|-.....+++.+..++++|||||.-|
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT---~AkpEvA~Y---------------PFTTK~i~vGhfe~~~~R~QvIDTPGlLDR 228 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLT---TAKPEVAPY---------------PFTTKGIHVGHFERGYLRIQVIDTPGLLDR 228 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHh---cCCCccCCC---------------CccccceeEeeeecCCceEEEecCCcccCC
Confidence 57999999999999999999994 544443332 12366667778888899999999999766
Q ss_pred -------cHHHHHHHHHh-cCeEEEEEeCCC--CCchhHH-HHHHHHH-hcCCCeEEEEecCCcccc
Q 008294 168 -------FTLEVERALRV-LDGAICLFDSVA--GVEPQSE-TVWRQAD-KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 -------f~~~~~~~l~~-~D~~ilVvda~~--g~~~~~~-~~~~~~~-~~~~p~ivviNK~D~~~~ 222 (571)
...+...|++. .+++++++|+++ |...... .+|+..+ .++.|+++|+||+|....
T Consensus 229 Pl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~ 295 (346)
T COG1084 229 PLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADE 295 (346)
T ss_pred ChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccch
Confidence 23445556654 478899999984 4433222 2334443 456899999999998753
No 273
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.39 E-value=5.3e-12 Score=121.15 Aligned_cols=115 Identities=13% Similarity=0.131 Sum_probs=79.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-----ecCeEEEEEcCCCCC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-----WNKHRINIIDTPGHV 166 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-----~~~~~i~liDTPG~~ 166 (571)
+|+++|..++|||||+++++.... ... + ...-|.++......+. ...+.++||||+|+.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f--~~~-----------~---~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQV--LGR-----------P---SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CCC-----------C---CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 689999999999999999973211 000 0 0011222322222221 134679999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHh----------------------cCCCeEEEEecCCcccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK----------------------YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~----------------------~~~p~ivviNK~D~~~~ 222 (571)
+|.......++.+|++|+|+|.++.........|. .+.. .++|+++|.||+|+...
T Consensus 66 ~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 66 SVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred hHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 99888888999999999999999876555554442 2221 36899999999998653
No 274
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.39 E-value=3.4e-12 Score=111.00 Aligned_cols=116 Identities=20% Similarity=0.223 Sum_probs=87.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
....|+|.+|+|||+|+-++...+.....+.. -|+......+.+......+.||||+|++.|..
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitT----------------iGvDfkirTv~i~G~~VkLqIwDtAGqErFrt 72 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITT----------------IGVDFKIRTVDINGDRVKLQIWDTAGQERFRT 72 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEE----------------eeeeEEEEEeecCCcEEEEEEeecccHHHHHH
Confidence 35679999999999999999744332222111 24445555555555667899999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc---CCCeEEEEecCCcccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY---GVPRICFVNKMDRLGA 222 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~---~~p~ivviNK~D~~~~ 222 (571)
.+..+++..+++++|+|.+.|.......-|..-.+. .+|-++|.||.|.++.
T Consensus 73 itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 73 ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPER 127 (198)
T ss_pred HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccc
Confidence 999999999999999999998877776666444433 4677899999998754
No 275
>PRK13768 GTPase; Provisional
Probab=99.37 E-value=1.1e-11 Score=123.46 Aligned_cols=69 Identities=23% Similarity=0.337 Sum_probs=49.9
Q ss_pred CeEEEEEcCCCCCCcH---HH---HHHHHHh--cCeEEEEEeCCCCCchhHHHHHHHHH-----hcCCCeEEEEecCCcc
Q 008294 154 KHRINIIDTPGHVDFT---LE---VERALRV--LDGAICLFDSVAGVEPQSETVWRQAD-----KYGVPRICFVNKMDRL 220 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~---~~---~~~~l~~--~D~~ilVvda~~g~~~~~~~~~~~~~-----~~~~p~ivviNK~D~~ 220 (571)
+..+.+|||||+.++. .. ..+.+.. ++++++|+|+..+....+......+. ..++|+++|+||+|+.
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 3479999999987742 22 2333433 79999999998877766654443332 5789999999999987
Q ss_pred cc
Q 008294 221 GA 222 (571)
Q Consensus 221 ~~ 222 (571)
..
T Consensus 176 ~~ 177 (253)
T PRK13768 176 SE 177 (253)
T ss_pred Cc
Confidence 64
No 276
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=6.7e-12 Score=109.23 Aligned_cols=119 Identities=21% Similarity=0.255 Sum_probs=84.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+-..+|+++|..|+|||.|+.++. .| -..+|... .-|+.+-...+.+..+..++++|||+|+++
T Consensus 5 kflfkivlvgnagvgktclvrrft--qg------lfppgqga--------tigvdfmiktvev~gekiklqiwdtagqer 68 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFT--QG------LFPPGQGA--------TIGVDFMIKTVEVNGEKIKLQIWDTAGQER 68 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhh--cc------CCCCCCCc--------eeeeeEEEEEEEECCeEEEEEEeeccchHH
Confidence 345789999999999999999996 22 22222200 013333344444445678899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~~ 222 (571)
|...+..+++.|+.+|+|.|.+.........-| +... ...+-.|+|.||+|+.+.
T Consensus 69 frsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 69 FRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR 127 (213)
T ss_pred HHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh
Confidence 999999999999999999999976654443322 2332 234556889999998543
No 277
>PLN00023 GTP-binding protein; Provisional
Probab=99.37 E-value=6.6e-12 Score=126.67 Aligned_cols=122 Identities=17% Similarity=0.142 Sum_probs=81.7
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee------------
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW------------ 152 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~------------ 152 (571)
.+.....+|+++|..|+|||||+++|+.... ... ....-|.++....+.+..
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F--~~~--------------~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~ 79 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSS--IAR--------------PPQTIGCTVGVKHITYGSPGSSSNSIKGDS 79 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCc--ccc--------------cCCceeeeEEEEEEEECCcccccccccccC
Confidence 3444567899999999999999999972211 000 000112233222222211
Q ss_pred -cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhc---------------CCCeEEEEe
Q 008294 153 -NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY---------------GVPRICFVN 215 (571)
Q Consensus 153 -~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~---------------~~p~ivviN 215 (571)
....++||||+|+..|.......++.+|++|+|+|.++.........| ..+... ++|++||.|
T Consensus 80 ~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN 159 (334)
T PLN00023 80 ERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN 159 (334)
T ss_pred CceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence 236799999999999999889999999999999999875444333333 233321 479999999
Q ss_pred cCCcccc
Q 008294 216 KMDRLGA 222 (571)
Q Consensus 216 K~D~~~~ 222 (571)
|+|+...
T Consensus 160 K~DL~~~ 166 (334)
T PLN00023 160 KADIAPK 166 (334)
T ss_pred Ccccccc
Confidence 9998653
No 278
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.34 E-value=1.4e-11 Score=124.06 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=87.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~ 167 (571)
..+|+++|++|+|||||+|+|+...-. ...+... .........+++......+..++ .++++|||||+.+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~-~~~~~~~-------~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd 75 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLI-PSDYPPD-------PAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGD 75 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCc-cccCCCC-------ccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccc
Confidence 468999999999999999999722111 1001000 00011222334444444455555 5799999999877
Q ss_pred cHHH---------------------HHHHHH-------hcCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 168 FTLE---------------------VERALR-------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 168 f~~~---------------------~~~~l~-------~~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
+... .....+ .+|++++++++. +++...+.+.++.+.. ++|+++|+||+|
T Consensus 76 ~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D 154 (276)
T cd01850 76 NINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKAD 154 (276)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCC
Confidence 5321 111112 368899999887 5788888888888875 799999999999
Q ss_pred ccccc-hhhhHHHHHHHhCC
Q 008294 219 RLGAN-FFRTRDMIVTNLGA 237 (571)
Q Consensus 219 ~~~~~-~~~~~~~i~~~l~~ 237 (571)
+...+ .....+.+++.+..
T Consensus 155 ~l~~~e~~~~k~~i~~~l~~ 174 (276)
T cd01850 155 TLTPEELKEFKQRIMEDIEE 174 (276)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 96532 33445555555533
No 279
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=8.4e-12 Score=129.00 Aligned_cols=116 Identities=17% Similarity=0.134 Sum_probs=87.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+|+|.+|+|||||+|+|.... ..+.+ ...|+|.+.....++.+++.+.|+||+|..+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~d---rsIVS--------------pv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSRED---RSIVS--------------PVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCC---ceEeC--------------CCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 345899999999999999999997322 22222 2357789988889999999999999999866
Q ss_pred c---------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC------------CeEEEEecCCcc
Q 008294 168 F---------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV------------PRICFVNKMDRL 220 (571)
Q Consensus 168 f---------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~------------p~ivviNK~D~~ 220 (571)
- ......++..+|++++|+|+.++...+...+.+.+...+. |.+++.||+|+.
T Consensus 329 ~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~ 402 (531)
T KOG1191|consen 329 ESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLV 402 (531)
T ss_pred ccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhcc
Confidence 1 3335667889999999999998888887777776665443 455566666653
No 280
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.32 E-value=5.4e-12 Score=117.53 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=67.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee---cCeEEEEEcCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---NKHRINIIDTPGHV 166 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---~~~~i~liDTPG~~ 166 (571)
.+.|.++|+.|+|||+|+..|.+... .. . + +++ .....+.. .+..+.+||+|||.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~--~~--T------~-----------tS~-e~n~~~~~~~~~~~~~~lvD~PGH~ 60 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKT--VP--T------V-----------TSM-ENNIAYNVNNSKGKKLRLVDIPGHP 60 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-------B--------------------S-SEEEECCGSSTCGTCECEEEETT-H
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCc--CC--e------e-----------ccc-cCCceEEeecCCCCEEEEEECCCcH
Confidence 46899999999999999999984311 10 0 0 011 11111111 45679999999999
Q ss_pred CcHHHHHHH---HHhcCeEEEEEeCCCCCchhHHHHHHH----H---H--hcCCCeEEEEecCCccccch
Q 008294 167 DFTLEVERA---LRVLDGAICLFDSVAGVEPQSETVWRQ----A---D--KYGVPRICFVNKMDRLGANF 224 (571)
Q Consensus 167 ~f~~~~~~~---l~~~D~~ilVvda~~g~~~~~~~~~~~----~---~--~~~~p~ivviNK~D~~~~~~ 224 (571)
+........ +..+.++|+|||+.. ....-.+..+. + . ...+|++|+.||.|+..+..
T Consensus 61 rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 61 RLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp CCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred HHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 988777765 888999999999974 22222222221 1 1 35789999999999987653
No 281
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.32 E-value=1.9e-12 Score=113.78 Aligned_cols=117 Identities=17% Similarity=0.114 Sum_probs=82.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..=+|||+|+-+++.+...-.....+ .-++.....+++.....++||||+|+++|.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTl----------------QASF~~kk~n~ed~ra~L~IWDTAGQErfH 76 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTL----------------QASFQNKKVNVEDCRADLHIWDTAGQERFH 76 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHH----------------HHHHhhcccccccceeeeeeeeccchHhhh
Confidence 4689999999999999999997433221111110 001222223333445679999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH----HHHHhcCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW----RQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~----~~~~~~~~p~ivviNK~D~~~~ 222 (571)
..---+++.+|++++|+|.++....|....| +.+....+..+||.||+|+...
T Consensus 77 ALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee 133 (218)
T KOG0088|consen 77 ALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE 133 (218)
T ss_pred ccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh
Confidence 7777789999999999999987777766655 2333446778899999998643
No 282
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.31 E-value=3.3e-12 Score=111.77 Aligned_cols=113 Identities=20% Similarity=0.194 Sum_probs=72.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++|+..... +........+.++......+......+.+||++|+..+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 66 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP--------------DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ 66 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc--------------ccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc
Confidence 5899999999999999999833221 00001111223333333344444456999999999887766
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhH-HHH---HHHHHh--cCCCeEEEEecCC
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQS-ETV---WRQADK--YGVPRICFVNKMD 218 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~-~~~---~~~~~~--~~~p~ivviNK~D 218 (571)
....+..+|++++|+|.++...... .++ +..... .++|+++|.||.|
T Consensus 67 ~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 67 HQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp SHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 6666999999999999986432222 122 122222 4699999999998
No 283
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.31 E-value=2.3e-11 Score=116.80 Aligned_cols=137 Identities=17% Similarity=0.160 Sum_probs=82.8
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceee---eeec-------C-----cccccchhhhhhhceeEeeceEEEe
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG---EVHE-------G-----TATMDWMEQEQERGITITSAATTTY 151 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g---~~~~-------g-----~~~~d~~~~e~~~g~t~~~~~~~~~ 151 (571)
.++...|.++|..|+||||++.+|....+...... .+++ + ..+.+|.+..++.+.--+-+..++-
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 34556889999999999999999974433222111 1111 0 1234555555554433322222211
Q ss_pred -----------------ecCeEEEEEcCCCCCCc------HHHHHHHHHhc--CeEEEEEeCCCCCchhH-----HHHHH
Q 008294 152 -----------------WNKHRINIIDTPGHVDF------TLEVERALRVL--DGAICLFDSVAGVEPQS-----ETVWR 201 (571)
Q Consensus 152 -----------------~~~~~i~liDTPG~~~f------~~~~~~~l~~~--D~~ilVvda~~g~~~~~-----~~~~~ 201 (571)
....++.||||||+.+. ......++... -+++.|||....-.+.| .....
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 03467999999999872 11222333332 46778898865443333 34456
Q ss_pred HHHhcCCCeEEEEecCCccccc
Q 008294 202 QADKYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 202 ~~~~~~~p~ivviNK~D~~~~~ 223 (571)
++.+..+|.|+|.||+|..+..
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~ 197 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSE 197 (366)
T ss_pred HHHhccCCeEEEEecccccccH
Confidence 7788899999999999987754
No 284
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.29 E-value=1.6e-11 Score=121.97 Aligned_cols=117 Identities=22% Similarity=0.254 Sum_probs=81.0
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-ecCeEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~liDTPG~ 165 (571)
.+-+-.|++||.||+|||||++++. .+..+++.+ + -+|+......+. ..+..+.+-|.||.
T Consensus 156 LKllADVGLVG~PNaGKSTlls~vS---~AkPKIadY-p--------------FTTL~PnLGvV~~~~~~sfv~ADIPGL 217 (369)
T COG0536 156 LKLLADVGLVGLPNAGKSTLLSAVS---AAKPKIADY-P--------------FTTLVPNLGVVRVDGGESFVVADIPGL 217 (369)
T ss_pred EeeecccccccCCCCcHHHHHHHHh---hcCCcccCC-c--------------cccccCcccEEEecCCCcEEEecCccc
Confidence 3445678999999999999999994 555555442 1 124444444333 35677999999998
Q ss_pred CC-------cHHHHHHHHHhcCeEEEEEeCCCCC----chhHHHHHHHHHhc-----CCCeEEEEecCCccc
Q 008294 166 VD-------FTLEVERALRVLDGAICLFDSVAGV----EPQSETVWRQADKY-----GVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~-------f~~~~~~~l~~~D~~ilVvda~~g~----~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~ 221 (571)
.+ ..-...+.+..+.+.++|||.+..- ...-..+...+.++ +.|.++|+||+|+..
T Consensus 218 IEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 218 IEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred ccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence 76 3445677888889999999998432 22233344555543 789999999999654
No 285
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1e-10 Score=101.01 Aligned_cols=123 Identities=20% Similarity=0.152 Sum_probs=86.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
-..|..+|-.++||||++-.|. .+...... -|+..+.-+..+++..+|+||..|+.+..
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLk--l~~~~~~i-------------------pTvGFnvetVtykN~kfNvwdvGGqd~iR 75 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLK--LGQSVTTI-------------------PTVGFNVETVTYKNVKFNVWDVGGQDKIR 75 (180)
T ss_pred cceEEEEecccCCceehhhHHh--cCCCcccc-------------------cccceeEEEEEeeeeEEeeeeccCchhhh
Confidence 3578899999999999999996 22111100 13344445566789999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCC--CchhHHHHHHHHH---hcCCCeEEEEecCCccccchhhhHHHHHHHhC
Q 008294 170 LEVERALRVLDGAICLFDSVAG--VEPQSETVWRQAD---KYGVPRICFVNKMDRLGANFFRTRDMIVTNLG 236 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g--~~~~~~~~~~~~~---~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~ 236 (571)
.-+.+++....++|||+|+.+. ++..-.++.+.+. ....+++|..||-|++.+. -.++|++.|+
T Consensus 76 plWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~---~pqei~d~le 144 (180)
T KOG0071|consen 76 PLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM---KPQEIQDKLE 144 (180)
T ss_pred HHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc---CHHHHHHHhc
Confidence 9999999999999999999864 2222223333332 2467888999999998764 2344444443
No 286
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.25 E-value=1.2e-10 Score=119.34 Aligned_cols=140 Identities=17% Similarity=0.104 Sum_probs=77.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCcc-----cc-cchhhh---hhhceeEeeceEEE-----
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA-----TM-DWMEQE---QERGITITSAATTT----- 150 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~~-----~~-d~~~~e---~~~g~t~~~~~~~~----- 150 (571)
.+...|+|+|.+|+|||||+++|.... |.....-..++... .+ |....+ ...++-+.......
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 456789999999999999999986332 22222222333222 11 221111 11222222211111
Q ss_pred -----------eecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 151 -----------YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 151 -----------~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
...++.+.||||+|...-... ....+|.+++|++...|..-|.... ....+..++|+||+|+
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~----gi~E~aDIiVVNKaDl 206 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK----GIMELADLIVINKADG 206 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh----hhhhhhheEEeehhcc
Confidence 124789999999998843222 5678999999987554443333211 0112234899999998
Q ss_pred cccc-hhhhHHHHHHH
Q 008294 220 LGAN-FFRTRDMIVTN 234 (571)
Q Consensus 220 ~~~~-~~~~~~~i~~~ 234 (571)
.... ..+...++++.
T Consensus 207 ~~~~~a~~~~~el~~~ 222 (332)
T PRK09435 207 DNKTAARRAAAEYRSA 222 (332)
T ss_pred cchhHHHHHHHHHHHH
Confidence 7543 23334444443
No 287
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.25 E-value=1.4e-10 Score=118.56 Aligned_cols=88 Identities=20% Similarity=0.199 Sum_probs=51.4
Q ss_pred EEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeec--------------eEEE--eecCeE
Q 008294 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA--------------ATTT--YWNKHR 156 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~--------------~~~~--~~~~~~ 156 (571)
|+++|.+|+|||||+|+|. +.....+. .++++. +...|+..... ...+ .+....
T Consensus 1 i~ivG~pnvGKStLfn~lt---~~~~~~~~-~pftT~------~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~ 70 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAAT---LADVEIAN-YPFTTI------DPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVP 70 (318)
T ss_pred CEEECCCCCCHHHHHHHHh---CCCCcccC-CCCccc------cceeEEEEEecCCCchhhhhhhcccccccccCcCcce
Confidence 5899999999999999996 22221111 111111 00111111000 0000 013357
Q ss_pred EEEEcCCCCC----CcH---HHHHHHHHhcCeEEEEEeCCC
Q 008294 157 INIIDTPGHV----DFT---LEVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 157 i~liDTPG~~----~f~---~~~~~~l~~~D~~ilVvda~~ 190 (571)
+++|||||.. .+. ......++.+|++++|||+..
T Consensus 71 i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 71 VELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred EEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 9999999983 232 345667999999999999973
No 288
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.23 E-value=1.8e-10 Score=112.04 Aligned_cols=115 Identities=19% Similarity=0.182 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee--cCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~--~~~~i~liDTPG~~~f 168 (571)
.+|+++|..|+|||||+++|......... ...+........... ....+.+|||+|+.+|
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~ 67 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGY------------------PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY 67 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccC------------------CCceeeeeEEEEEEeCCCEEEEEeecCCCHHHH
Confidence 78999999999999999999732211000 001111111111111 1467999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCC--CCchhHHHHHHHHHhc---CCCeEEEEecCCccccc
Q 008294 169 TLEVERALRVLDGAICLFDSVA--GVEPQSETVWRQADKY---GVPRICFVNKMDRLGAN 223 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~--g~~~~~~~~~~~~~~~---~~p~ivviNK~D~~~~~ 223 (571)
...+..+.+.++++++|+|... ............+... +.|+++|.||+|+....
T Consensus 68 ~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 68 RSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred HHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 9999999999999999999985 2223333333344443 58999999999997653
No 289
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.8e-11 Score=108.58 Aligned_cols=120 Identities=19% Similarity=0.120 Sum_probs=84.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
-..|.|+|.-++|||||+.++=.... ..-+.. .+. +--.|+.....+.+..+..+.+||.-|+....
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~--~~~~~l---------~~~--ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lr 83 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFS--KAYGGL---------NPS--KITPTVGLNIGTIEVCNAPLSFWDLGGQESLR 83 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHH--hhhcCC---------CHH--HeecccceeecceeeccceeEEEEcCChHHHH
Confidence 35789999999999999999841100 000000 000 11125555556666678899999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCch-----hHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEP-----QSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~-----~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
+.+..++..++++|+||||.+.-.. +-+.+...-...++|+++.+||-|+.++
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 84 SLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA 141 (197)
T ss_pred HHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence 9999999999999999999973222 2223334444569999999999998764
No 290
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.20 E-value=7.5e-11 Score=116.33 Aligned_cols=204 Identities=17% Similarity=0.212 Sum_probs=126.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc-
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF- 168 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f- 168 (571)
.-++++||.+++|||||+++| ++.....+... -+|......-+.+++.+|+++|+||...-
T Consensus 63 da~v~lVGfPsvGKStLL~~L---Tnt~seva~y~---------------FTTl~~VPG~l~Y~ga~IQild~Pgii~ga 124 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKL---TNTKSEVADYP---------------FTTLEPVPGMLEYKGAQIQLLDLPGIIEGA 124 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHH---hCCCccccccC---------------ceecccccceEeecCceEEEEcCcccccCc
Confidence 468999999999999999999 46655555431 23666777778899999999999997552
Q ss_pred ------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC-----CeEEEEecCCccccc----------hhhh
Q 008294 169 ------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV-----PRICFVNKMDRLGAN----------FFRT 227 (571)
Q Consensus 169 ------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~-----p~ivviNK~D~~~~~----------~~~~ 227 (571)
..++....|.||++++|+|+...... -..+.+.+...++ |--+.+.|-+.-+-+ -...
T Consensus 125 s~g~grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ 203 (365)
T COG1163 125 SSGRGRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDT 203 (365)
T ss_pred ccCCCCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHH
Confidence 35678889999999999999875433 3345566665543 333444443332211 1345
Q ss_pred HHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHH
Q 008294 228 RDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAM 307 (571)
Q Consensus 228 ~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~ 307 (571)
+..+.+.++++.+.+. |.++-.+..++|.+..+ +.|.+.. +...-
T Consensus 204 ir~iL~Ey~I~nA~V~--Ir~dvTlDd~id~l~~n-rvY~p~l----~v~NK---------------------------- 248 (365)
T COG1163 204 VRAILREYRIHNADVL--IREDVTLDDLIDALEGN-RVYKPAL----YVVNK---------------------------- 248 (365)
T ss_pred HHHHHHHhCcccceEE--EecCCcHHHHHHHHhhc-ceeeeeE----EEEec----------------------------
Confidence 6666677777655433 23334444555554433 2222210 00000
Q ss_pred HHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhC
Q 008294 308 ESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYL 359 (571)
Q Consensus 308 e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~l 359 (571)
...++.+++....+. ...+++||.++.|+++|.+.|.+.+
T Consensus 249 -----iD~~~~e~~~~l~~~-------~~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 249 -----IDLPGLEELERLARK-------PNSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred -----ccccCHHHHHHHHhc-------cceEEEecccCCCHHHHHHHHHHhh
Confidence 011222222222211 1567779999999999999999876
No 291
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.20 E-value=1.3e-11 Score=105.47 Aligned_cols=112 Identities=21% Similarity=0.227 Sum_probs=81.7
Q ss_pred EEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHHHHH
Q 008294 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 174 (571)
Q Consensus 95 ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~ 174 (571)
++|.+++|||.|+-++- . |..-.|++.. ..|+......+.+.....++++|||+|+++|.+.+..
T Consensus 2 llgds~~gktcllir~k--d------gafl~~~fis-------tvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~a 66 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFK--D------GAFLAGNFIS-------TVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHA 66 (192)
T ss_pred ccccCccCceEEEEEec--c------CceecCceee-------eeeeccccceeccCCcEEEEEEeeccchHHHhhhhHh
Confidence 68999999999986652 2 2222222222 1355555566666667788999999999999999999
Q ss_pred HHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 175 ALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 175 ~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
+++.+|..+++.|..+.........| .+..+ ..+.+.++.||+|+..
T Consensus 67 yyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 67 YYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH 117 (192)
T ss_pred hhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch
Confidence 99999999999999877666555555 23333 3567788999999854
No 292
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.20 E-value=7.4e-11 Score=116.00 Aligned_cols=129 Identities=19% Similarity=0.276 Sum_probs=61.5
Q ss_pred EEcCCCCchHHHHHHHHHhc---CCcceeeeeecCcccccchh------------hhhhhceeEeec--------eEEEe
Q 008294 95 IMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTATMDWME------------QEQERGITITSA--------ATTTY 151 (571)
Q Consensus 95 ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~~~~d~~~------------~e~~~g~t~~~~--------~~~~~ 151 (571)
|+|++|+||||++.++.... |........+++.....+.+ ...+.|.--+.+ ...++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d 80 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID 80 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence 68999999999999997433 22333444555543322211 111111100000 00011
Q ss_pred e-------cCeEEEEEcCCCCCCcHHHHHH------HHH--hcCeEEEEEeCCCCCchhHH-----HHHHHHHhcCCCeE
Q 008294 152 W-------NKHRINIIDTPGHVDFTLEVER------ALR--VLDGAICLFDSVAGVEPQSE-----TVWRQADKYGVPRI 211 (571)
Q Consensus 152 ~-------~~~~i~liDTPG~~~f~~~~~~------~l~--~~D~~ilVvda~~g~~~~~~-----~~~~~~~~~~~p~i 211 (571)
| ....+.|+|||||.++...... .+. ..=++++++|+..-..+... ..+..+.+.++|++
T Consensus 81 ~l~~~i~~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~v 160 (238)
T PF03029_consen 81 WLDEEIEKYEDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHV 160 (238)
T ss_dssp HHHHHHHHHH-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHhhcCCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEE
Confidence 1 1237999999999886433222 222 23478899999754333222 22233455799999
Q ss_pred EEEecCCccccc
Q 008294 212 CFVNKMDRLGAN 223 (571)
Q Consensus 212 vviNK~D~~~~~ 223 (571)
.|+||+|+....
T Consensus 161 nvlsK~Dl~~~~ 172 (238)
T PF03029_consen 161 NVLSKIDLLSKY 172 (238)
T ss_dssp EEE--GGGS-HH
T ss_pred EeeeccCcccch
Confidence 999999998754
No 293
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=2.5e-10 Score=98.47 Aligned_cols=120 Identities=16% Similarity=0.109 Sum_probs=84.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
....+.+-.|||..|+|||.|+..+.........+.. -|+.+....+.+.....++++|||.|+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcpht----------------igvefgtriievsgqkiklqiwdtagq 70 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHT----------------IGVEFGTRIIEVSGQKIKLQIWDTAGQ 70 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcc----------------cceecceeEEEecCcEEEEEEeecccH
Confidence 3445778889999999999999999643322221111 234444444455556788999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHhc---CCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADKY---GVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~~---~~p~ivviNK~D~~~ 221 (571)
++|...+..+++.+-++++|.|.+...+......|. .++.. +.-++++.||.|+..
T Consensus 71 erfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 71 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred HHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh
Confidence 999999999999999999999998655444444443 23333 334577889999864
No 294
>PTZ00099 rab6; Provisional
Probab=99.19 E-value=1.5e-10 Score=108.83 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=53.1
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH-Hh--cCCCeEEEEecCCccc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA-DK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~-~~--~~~p~ivviNK~D~~~ 221 (571)
....+.||||||+..|...+..+++.+|++|+|+|.++.........| ..+ .. .++|+++|+||+|+..
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~ 99 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 99 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 457899999999999998889999999999999999875443333333 222 22 3578899999999853
No 295
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.18 E-value=2.8e-10 Score=108.60 Aligned_cols=115 Identities=18% Similarity=0.110 Sum_probs=80.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||+|+-+++...........+ + +.......+......+.|+||+|+.+|.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~pti----------e-------d~y~k~~~v~~~~~~l~ilDt~g~~~~~ 65 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTI----------E-------DSYRKELTVDGEVCMLEILDTAGQEEFS 65 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCc----------c-------ccceEEEEECCEEEEEEEEcCCCcccCh
Confidence 4689999999999999999997332211111100 0 1112222333345778899999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH----HhcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~----~~~~~p~ivviNK~D~~~ 221 (571)
.....+++.+|+.++|++.++--..+....+ ..+ ....+|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 66 AMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred HHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 9999999999999999999875544433322 222 224689999999999865
No 296
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.16 E-value=6.7e-10 Score=107.39 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=71.6
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCccc--ccchhhhhhhcee---EeeceEEE----------
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTAT--MDWMEQEQERGIT---ITSAATTT---------- 150 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~--~d~~~~e~~~g~t---~~~~~~~~---------- 150 (571)
....+++|+++|+.|+|||||+++++...+...+.+ +..+... .|.... +..|.. +......+
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~-v~~~~~~~~~D~~~~-~~~~~~~~~l~~gcic~~~~~~~~~~l 95 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIA-VIEGDVITKFDAERL-RKYGAPAIQINTGKECHLDAHMVAHAL 95 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEE-EEECCCCCcccHHHH-HHcCCcEEEEcCCCcccCChHHHHHHH
Confidence 445689999999999999999999997654322222 2222221 222221 122221 11111111
Q ss_pred ---eecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 151 ---YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 151 ---~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
...+..+.||+|.|...... ......+..+.|+|+.++...... .....+.|.++++||+|+..
T Consensus 96 ~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~~----~~~~~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 96 EDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPLK----YPGMFKEADLIVINKADLAE 162 (207)
T ss_pred HHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhhh----hHhHHhhCCEEEEEHHHccc
Confidence 00246899999999321111 111234666789999866543221 22234578899999999864
No 297
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=4.9e-10 Score=104.29 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=85.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
.+.|.++|..|+|||+|+-.|.+... .+. -+++......+..++...+|||.|||.+..
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~----~~T-----------------vtSiepn~a~~r~gs~~~~LVD~PGH~rlR 96 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSH----RGT-----------------VTSIEPNEATYRLGSENVTLVDLPGHSRLR 96 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCc----cCe-----------------eeeeccceeeEeecCcceEEEeCCCcHHHH
Confidence 36789999999999999999973211 111 135666677777778889999999999988
Q ss_pred HHHHHHHH---hcCeEEEEEeCCCCC---chhHHHHHHHH-----HhcCCCeEEEEecCCccccchhhhHH
Q 008294 170 LEVERALR---VLDGAICLFDSVAGV---EPQSETVWRQA-----DKYGVPRICFVNKMDRLGANFFRTRD 229 (571)
Q Consensus 170 ~~~~~~l~---~~D~~ilVvda~~g~---~~~~~~~~~~~-----~~~~~p~ivviNK~D~~~~~~~~~~~ 229 (571)
......+. .+-++|||||+..-. ....+.+...+ ....+|++++.||.|+..+...+.++
T Consensus 97 ~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir 167 (238)
T KOG0090|consen 97 RKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIR 167 (238)
T ss_pred HHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHH
Confidence 88777777 789999999997432 22222222222 24567888999999998877555444
No 298
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1e-10 Score=101.50 Aligned_cols=113 Identities=23% Similarity=0.192 Sum_probs=80.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+--+|.++|-.|+||||++-++- .|++.. .--|+..+..++.+++..+++||..|+...
T Consensus 17 ~e~rililgldGaGkttIlyrlq--------vgevvt-------------tkPtigfnve~v~yKNLk~~vwdLggqtSi 75 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQ--------VGEVVT-------------TKPTIGFNVETVPYKNLKFQVWDLGGQTSI 75 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcc--------cCcccc-------------cCCCCCcCccccccccccceeeEccCcccc
Confidence 44578899999999999887773 122110 011444555566678999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCC--chhHHHHHHHHHh---cCCCeEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGV--EPQSETVWRQADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~--~~~~~~~~~~~~~---~~~p~ivviNK~D~~~~ 222 (571)
..-+..++...|.+|+|||..+-. .....++..++.+ .+...+++.||+|...+
T Consensus 76 rPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 76 RPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred cHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence 999999999999999999998632 2233334334332 35566788999997654
No 299
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.7e-10 Score=101.67 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee---------cCeEEEEEc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------NKHRINIID 161 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------~~~~i~liD 161 (571)
.+...+|.+|+|||+++-+.. .|.... .+.. ..||.+....+.+.. ....++|||
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YT--D~~F~~-------qFIs-------TVGIDFreKrvvY~s~gp~g~gr~~rihLQlWD 73 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYT--DGKFNT-------QFIS-------TVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWD 73 (219)
T ss_pred HHHHhhccCCCCceEEEEEec--CCcccc-------eeEE-------EeecccccceEEEeccCCCCCCcceEEEEeeec
Confidence 345678999999999987764 111100 0000 012222222222211 125689999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCcccc
Q 008294 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 162 TPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~~ 222 (571)
|+|+++|.+.+-..++.|-+.++++|.+..........| .+++. .+--++++.||+|+.+.
T Consensus 74 TAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~ 139 (219)
T KOG0081|consen 74 TAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ 139 (219)
T ss_pred cccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh
Confidence 999999999999999999999999999876555555544 33332 24446778999998754
No 300
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.12 E-value=1.3e-09 Score=96.63 Aligned_cols=115 Identities=15% Similarity=0.206 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchh--hhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWME--QEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~--~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
.++.+||.+-+|||+|+..+. .|...... +.+--.|+.. .|-++|. ..+++||||+|+++|
T Consensus 9 frlivigdstvgkssll~~ft--~gkfaels---dptvgvdffarlie~~pg~------------riklqlwdtagqerf 71 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFT--EGKFAELS---DPTVGVDFFARLIELRPGY------------RIKLQLWDTAGQERF 71 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHh--cCcccccC---CCccchHHHHHHHhcCCCc------------EEEEEEeeccchHHH
Confidence 567899999999999999986 33322221 1121122221 2222332 357899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc--C---CC-eEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--G---VP-RICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~---~p-~ivviNK~D~~~~ 222 (571)
...+..+++.+-++++|+|.++.-.....+.|..-.++ + .+ +.+|..|+|+...
T Consensus 72 rsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq 131 (213)
T KOG0091|consen 72 RSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ 131 (213)
T ss_pred HHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh
Confidence 99999999999999999999876555555555332222 2 22 3568899998643
No 301
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.11 E-value=7e-10 Score=107.60 Aligned_cols=126 Identities=27% Similarity=0.270 Sum_probs=70.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh---cCCcceeeeeec------Ccccccch---hhhhhhceeEeeceEE-------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHE------GTATMDWM---EQEQERGITITSAATT------- 149 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~------g~~~~d~~---~~e~~~g~t~~~~~~~------- 149 (571)
+-..|+|.|.+|+|||||+++|... .|.....-.+++ |...-|.. ......|+-+.+....
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4679999999999999999999733 232222212221 22222221 1223445555443322
Q ss_pred ---------EeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHH--HHHHHHHhcCCCeEEEEecCC
Q 008294 150 ---------TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 150 ---------~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~~~p~ivviNK~D 218 (571)
++.-++.+.||.|-|...- + ..-...+|.+++|+-+..|..-|.. -+++. .-++|+||+|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQs--E-~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~vVNKaD 178 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQS--E-VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADIFVVNKAD 178 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTH--H-HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--S
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCcc--H-HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccEEEEeCCC
Confidence 1114789999999997652 2 2235678999999988766555442 33333 4599999999
Q ss_pred ccccc
Q 008294 219 RLGAN 223 (571)
Q Consensus 219 ~~~~~ 223 (571)
+..++
T Consensus 179 ~~gA~ 183 (266)
T PF03308_consen 179 RPGAD 183 (266)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 76653
No 302
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.10 E-value=2.8e-10 Score=96.70 Aligned_cols=99 Identities=21% Similarity=0.158 Sum_probs=63.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC----C
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH----V 166 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~----~ 166 (571)
++|++||.+|+|||||+++|. |.... -.....+ +|+ .=-.|||||- .
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~---G~~~l----------------------ykKTQAv--e~~--d~~~IDTPGEy~~~~ 52 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLY---GNDTL----------------------YKKTQAV--EFN--DKGDIDTPGEYFEHP 52 (148)
T ss_pred ceeEEecccccCchhHHHHhh---cchhh----------------------hccccee--ecc--CccccCCchhhhhhh
Confidence 479999999999999999995 21000 0011111 121 1237899993 3
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.+-.........+|.+++|-.++++.+.-. -..+.-...|+|-|++|+|++.
T Consensus 53 ~~Y~aL~tt~~dadvi~~v~~and~~s~f~---p~f~~~~~k~vIgvVTK~DLae 104 (148)
T COG4917 53 RWYHALITTLQDADVIIYVHAANDPESRFP---PGFLDIGVKKVIGVVTKADLAE 104 (148)
T ss_pred HHHHHHHHHhhccceeeeeecccCccccCC---cccccccccceEEEEecccccc
Confidence 334445566678899999998887643211 1223345678899999999973
No 303
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.10 E-value=4.9e-10 Score=97.00 Aligned_cols=115 Identities=23% Similarity=0.253 Sum_probs=81.5
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-CeEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~liDTPG~ 165 (571)
..+-.+|.++|-.++||||++..|- +. |....-...|. +...+.+. .+++++||..|+
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~---sE--------------D~~hltpT~GF----n~k~v~~~g~f~LnvwDiGGq 72 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLK---SE--------------DPRHLTPTNGF----NTKKVEYDGTFHLNVWDIGGQ 72 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHc---cC--------------ChhhccccCCc----ceEEEeecCcEEEEEEecCCc
Confidence 3556789999999999999999994 11 11111111232 22334444 489999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCc--hhHH---HHHHHHHhcCCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVE--PQSE---TVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~--~~~~---~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
......+..++...|++|+|||+++.-. ...+ ++++..+...+|+.++.||-|+..+
T Consensus 73 r~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 73 RGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred cccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 9999999999999999999999876321 2222 2333344567899999999998754
No 304
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.09 E-value=2.4e-09 Score=112.91 Aligned_cols=82 Identities=23% Similarity=0.260 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-------------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY------------------- 151 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~------------------- 151 (571)
.+|++||.+|+|||||+|+|. +.....+. .+++ |+........
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt---~~~~~~~~-y~f~--------------t~~p~~g~~~v~~~~~~~r~~~~~~~~~~ 63 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAAT---LADVEIAN-YPFT--------------TIDPNVGVAYVRVECPCKELGVKCNPRNG 63 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCcccccC-CCCc--------------ceeeeeeeeeeccCCchhhhhhhhccccc
Confidence 379999999999999999996 32222111 1111 2111111100
Q ss_pred -----ecCeEEEEEcCCCCCC-------cHHHHHHHHHhcCeEEEEEeCCC
Q 008294 152 -----WNKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 152 -----~~~~~i~liDTPG~~~-------f~~~~~~~l~~~D~~ilVvda~~ 190 (571)
+....++++||||..+ ........++.+|++++|||+..
T Consensus 64 ~~~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 64 KCIDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred cccCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 1235689999999743 23356677999999999999973
No 305
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.09 E-value=8.5e-11 Score=93.90 Aligned_cols=68 Identities=40% Similarity=0.581 Sum_probs=62.6
Q ss_pred ceEEEEEEecceeCCCCEEEe--CCCCce---eecceEEEeccCceeecCeecCCCEEEEeCCCC-ccccceec
Q 008294 404 GSLTFVRVYAGTLSAGSYVLN--ANKGKK---ERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLC 471 (571)
Q Consensus 404 G~i~~~rV~sG~l~~gd~v~~--~~~~~~---~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~-~~~Gdtl~ 471 (571)
|+++++||++|+|++||.|++ ..+++. .+|++|+.+++...++++.+.||+++.+.++++ +..|||||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 789999999999999999999 445455 899999999999999999999999999999999 79999996
No 306
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.08 E-value=2.2e-09 Score=106.23 Aligned_cols=119 Identities=16% Similarity=0.184 Sum_probs=71.0
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
......+|+++|.+|+|||||+|+|+..... ..+. -.+.|.........+++..+++|||||.
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~--~v~~---------------~~~~T~~~~~~~~~~~g~~i~vIDTPGl 89 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKA--ATSA---------------FQSETLRVREVSGTVDGFKLNIIDTPGL 89 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCc--ccCC---------------CCCceEEEEEEEEEECCeEEEEEECCCc
Confidence 3445689999999999999999999722110 0010 0123445555566678899999999999
Q ss_pred CCcHH------H----HHHHHH--hcCeEEEEEeCCC-CCchhHHHHHHHHHh-cC----CCeEEEEecCCccc
Q 008294 166 VDFTL------E----VERALR--VLDGAICLFDSVA-GVEPQSETVWRQADK-YG----VPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~------~----~~~~l~--~~D~~ilVvda~~-g~~~~~~~~~~~~~~-~~----~p~ivviNK~D~~~ 221 (571)
.+... . +..++. ..|.+++|..... .....+...++.+.. ++ .++++|+||+|...
T Consensus 90 ~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 90 LESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 87621 1 111222 3466666654432 233444444444433 22 35677888888643
No 307
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.06 E-value=1.3e-09 Score=106.74 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=55.3
Q ss_pred CeEEEEEcCCCCCCc-------------HHHHHHHHH-hcCeEEEEEeCCCCCchhH-HHHHHHHHhcCCCeEEEEecCC
Q 008294 154 KHRINIIDTPGHVDF-------------TLEVERALR-VLDGAICLFDSVAGVEPQS-ETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 154 ~~~i~liDTPG~~~f-------------~~~~~~~l~-~~D~~ilVvda~~g~~~~~-~~~~~~~~~~~~p~ivviNK~D 218 (571)
-..++||||||+... ...+..+++ ..+.+++|+|+..++..+. .++.+.+...+.|.++|+||+|
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D 203 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLD 203 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCC
Confidence 367999999998632 123555667 4469999999999888877 5788888889999999999999
Q ss_pred ccccc
Q 008294 219 RLGAN 223 (571)
Q Consensus 219 ~~~~~ 223 (571)
.....
T Consensus 204 ~~~~~ 208 (240)
T smart00053 204 LMDEG 208 (240)
T ss_pred CCCcc
Confidence 87543
No 308
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.01 E-value=3.8e-09 Score=108.49 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=93.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhc---eeEeece-----EEEee---cCeEEE
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERG---ITITSAA-----TTTYW---NKHRIN 158 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g---~t~~~~~-----~~~~~---~~~~i~ 158 (571)
-..|+++|+.++|||||+|+|....- ...+.......+..|-.+. ...| +|..... +.+.. -...+.
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~V-lP~i~~~~~k~Ra~DELpq-s~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLV-LPNISNEYDKERAQDELPQ-SAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhc-cccccchhHHhHHHhccCc-CCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 46799999999999999999974311 0000000000000000000 1123 2322222 11111 236799
Q ss_pred EEcCCCCCC-------------------------cHHH----HHHHHH-hcCeEEEEE-eCC------CCCchhHHHHHH
Q 008294 159 IIDTPGHVD-------------------------FTLE----VERALR-VLDGAICLF-DSV------AGVEPQSETVWR 201 (571)
Q Consensus 159 liDTPG~~~-------------------------f~~~----~~~~l~-~~D~~ilVv-da~------~g~~~~~~~~~~ 201 (571)
||||+|+.+ |... +...+. .+|.+|+|. |++ ++.....++...
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999999865 1111 455667 789999999 886 556677888899
Q ss_pred HHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceee
Q 008294 202 QADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (571)
Q Consensus 202 ~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 242 (571)
.+++.++|+++++||.|-...+..+..+++.++++...+++
T Consensus 175 eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v 215 (492)
T TIGR02836 175 ELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAM 215 (492)
T ss_pred HHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEE
Confidence 99999999999999999544445556677778777544443
No 309
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.00 E-value=3.4e-09 Score=88.17 Aligned_cols=85 Identities=24% Similarity=0.311 Sum_probs=74.0
Q ss_pred CCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--
Q 008294 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK-- 462 (571)
Q Consensus 387 ~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~-- 462 (571)
+.||++.|.++|..++.|++..|||.+|+++.||.|++.+.+...+|++|.... .++++|.|||.++| .+++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~----~~~~~a~aG~~v~i~l~~i~~~ 77 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHH----EPLEEALPGDNVGFNVKNVSKK 77 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECC----cCcCEECCCCEEEEEECCCCHH
Confidence 469999999999988999999999999999999999999988888899987543 77999999999998 4543
Q ss_pred CccccceecCCCC
Q 008294 463 DTITGETLCDADH 475 (571)
Q Consensus 463 ~~~~Gdtl~~~~~ 475 (571)
++.+|++||+++.
T Consensus 78 ~v~~G~vl~~~~~ 90 (91)
T cd03693 78 DIKRGDVAGDSKN 90 (91)
T ss_pred HcCCcCEEccCCC
Confidence 3789999998653
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.97 E-value=1.6e-08 Score=103.32 Aligned_cols=128 Identities=21% Similarity=0.179 Sum_probs=70.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCcc-----cc-cch---hhhhhhceeEeeceEE------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA-----TM-DWM---EQEQERGITITSAATT------ 149 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~~-----~~-d~~---~~e~~~g~t~~~~~~~------ 149 (571)
.+...|+|+|.+|+|||||++.|.... |.....-..++... .. +.. ......+..+......
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 456889999999999999999987432 22111111121111 11 100 0000112111111110
Q ss_pred ----------EeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 150 ----------TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 150 ----------~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
+...++.+.||||||...-. ...+..+|.++++.+...+..-+. .... ..++|.++|+||+|+
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~--~~~~--l~~~~~ivv~NK~Dl 184 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQG--IKAG--LMEIADIYVVNKADG 184 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHH--HHHH--HhhhccEEEEEcccc
Confidence 11247899999999976422 335677899888865543321111 1111 246889999999998
Q ss_pred ccc
Q 008294 220 LGA 222 (571)
Q Consensus 220 ~~~ 222 (571)
...
T Consensus 185 ~~~ 187 (300)
T TIGR00750 185 EGA 187 (300)
T ss_pred cch
Confidence 754
No 311
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.94 E-value=6e-09 Score=85.17 Aligned_cols=79 Identities=24% Similarity=0.399 Sum_probs=69.1
Q ss_pred CeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Cc
Q 008294 389 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DT 464 (571)
Q Consensus 389 p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~ 464 (571)
||.+.|...+..+ .|++..|||.+|++++||.|+..+.+...+|++|...+ .++++|.|||.+++ .+++ ++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~----~~~~~a~aGd~v~~~l~~~~~~~v 75 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDD----EEVDYAVAGENVRLKLKGIDEEDI 75 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECC----eECCEECCCCEEEEEECCCCHHHC
Confidence 6889999999888 89999999999999999999999988888899887553 88999999999996 5655 48
Q ss_pred cccceecC
Q 008294 465 ITGETLCD 472 (571)
Q Consensus 465 ~~Gdtl~~ 472 (571)
..|++||+
T Consensus 76 ~~G~vl~~ 83 (83)
T cd03698 76 SPGDVLCS 83 (83)
T ss_pred CCCCEEeC
Confidence 89999874
No 312
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.93 E-value=2.1e-08 Score=98.65 Aligned_cols=128 Identities=23% Similarity=0.239 Sum_probs=73.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh---cCCcceeeeeec-----Ccccc-cchh---hhhhhceeEeeceEE-------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHE-----GTATM-DWME---QEQERGITITSAATT------- 149 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~-----g~~~~-d~~~---~e~~~g~t~~~~~~~------- 149 (571)
+-..|+|.|.+|+|||||+++|... .|.....-.+++ |.+.+ |... .....|+-+.+....
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 4458999999999999999999632 233222222222 22221 1111 111223332222111
Q ss_pred ---------EeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 150 ---------TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 150 ---------~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
|+--++.+.||.|-|...-.. .-...+|.+++|.=+.-|...|.... --+.+--++||||+|+.
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINKaD~~ 202 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINKADRK 202 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHh----hhhhhhheeeEeccChh
Confidence 111478999999999765222 22356799998887777766665432 11123449999999976
Q ss_pred ccc
Q 008294 221 GAN 223 (571)
Q Consensus 221 ~~~ 223 (571)
+++
T Consensus 203 ~A~ 205 (323)
T COG1703 203 GAE 205 (323)
T ss_pred hHH
Confidence 653
No 313
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.92 E-value=6.5e-10 Score=99.99 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=82.3
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
..++...++|+|..++||||++.+++ .|...+- +..+...|+.+ ....+.....++.+|||.|+
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryC--kgifTkd---ykktIgvdfle-----------rqi~v~~Edvr~mlWdtagq 79 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYC--KGIFTKD---YKKTIGVDFLE-----------RQIKVLIEDVRSMLWDTAGQ 79 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHh--ccccccc---cccccchhhhh-----------HHHHhhHHHHHHHHHHhccc
Confidence 34567889999999999999999997 2211110 00011112211 11112234567889999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH--HhcCCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA--DKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~--~~~~~p~ivviNK~D~~~~ 222 (571)
.+|-..+..+++.|.+.++|++.++........-| +.. .-..+|.++|-||||+...
T Consensus 80 eEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 80 EEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVED 139 (246)
T ss_pred hhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHh
Confidence 99999999999999999999998875544333333 222 2247999999999998754
No 314
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.92 E-value=2.2e-08 Score=95.97 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=37.0
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+....+|+|.|..- ..... -..+|.+|+|+|+.++...+.. . .......-++++||+|+..
T Consensus 91 ~~D~iiIEt~G~~l-~~~~~--~~l~~~~i~vvD~~~~~~~~~~-~---~~qi~~ad~~~~~k~d~~~ 151 (199)
T TIGR00101 91 PLEMVFIESGGDNL-SATFS--PELADLTIFVIDVAAGDKIPRK-G---GPGITRSDLLVINKIDLAP 151 (199)
T ss_pred CCCEEEEECCCCCc-ccccc--hhhhCcEEEEEEcchhhhhhhh-h---HhHhhhccEEEEEhhhccc
Confidence 46788999999321 11111 1236899999999876553221 0 1112223389999999874
No 315
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.88 E-value=2.5e-08 Score=97.21 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=77.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCCcHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~f~~ 170 (571)
+|.++|..++||||+.+.+..+... . +-..-|.|.......+.. +...+++||+||+.+|..
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p--~---------------dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~ 63 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP--R---------------DTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFME 63 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G--G---------------GGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc--h---------------hccccCCcCCceEEEEecCCCcEEEEEEcCCcccccc
Confidence 5889999999999999998722110 0 011224466555555543 556999999999998765
Q ss_pred H-----HHHHHHhcCeEEEEEeCC-CCCchhH---HHHHHHHHhc--CCCeEEEEecCCccccc-hhhhHHHHHHHh
Q 008294 171 E-----VERALRVLDGAICLFDSV-AGVEPQS---ETVWRQADKY--GVPRICFVNKMDRLGAN-FFRTRDMIVTNL 235 (571)
Q Consensus 171 ~-----~~~~l~~~D~~ilVvda~-~g~~~~~---~~~~~~~~~~--~~p~ivviNK~D~~~~~-~~~~~~~i~~~l 235 (571)
. ...-++.++++|+|+|+. +...... ...+..+.+. ++.+.|++.|+|+...+ ..++.+.+++.+
T Consensus 64 ~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i 140 (232)
T PF04670_consen 64 NYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRI 140 (232)
T ss_dssp TTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHH
Confidence 4 466789999999999998 3332222 2333444443 67788999999997654 233444444433
No 316
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.86 E-value=5.6e-09 Score=97.12 Aligned_cols=65 Identities=22% Similarity=0.178 Sum_probs=48.0
Q ss_pred cCeEEEEEcCCCCCCc----HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHH-hcCCCeEEEEecC
Q 008294 153 NKHRINIIDTPGHVDF----TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICFVNKM 217 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f----~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~-~~~~p~ivviNK~ 217 (571)
....+.|+||||..+. ...+..++..+|++|+|+++.........+.+.... ...-..++|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 3456999999998542 355778889999999999999877766666555444 4455677888985
No 317
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.86 E-value=4.5e-08 Score=98.52 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=71.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|.+|+||||++|+|+ |......+ .+ .+.+.........+++..+++|||||..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIl---G~~v~~vs--------~f------~s~t~~~~~~~~~~~G~~l~VIDTPGL~d 98 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSII---GERIATVS--------AF------QSEGLRPMMVSRTRAGFTLNIIDTPGLIE 98 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHh---CCCccccc--------CC------CCcceeEEEEEEEECCeEEEEEECCCCCc
Confidence 356789999999999999999997 22111000 00 01122222334456889999999999987
Q ss_pred cHH---HHHHHHH------hcCeEEEEEeCCC-CCchhHHHHHHHHHhc-----CCCeEEEEecCCcc
Q 008294 168 FTL---EVERALR------VLDGAICLFDSVA-GVEPQSETVWRQADKY-----GVPRICFVNKMDRL 220 (571)
Q Consensus 168 f~~---~~~~~l~------~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~ 220 (571)
... +....++ ..|++++|..... .....+..+++.+... -.+.++++|+.|..
T Consensus 99 ~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 99 GGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 521 2222233 4789999954332 3444445555544432 25689999999975
No 318
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.85 E-value=1.7e-08 Score=81.28 Aligned_cols=78 Identities=31% Similarity=0.428 Sum_probs=67.7
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCC--CCceeecceEEEeccCceeecCeecCCCEEEEeCCCC--cc
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD--TI 465 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~--~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~--~~ 465 (571)
+.++|++++.+++.|+++++||++|+|++||.++..+ .....+|.+|+... .+++++.|||++++.+.+. +.
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~~~~~~~~ 76 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK----GEVDEAVAGDIVGIVLKDKDDIK 76 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecC----ceeceecCCCEEEEEEccccccC
Confidence 3678999999999999999999999999999999887 66677888887665 6789999999999977654 88
Q ss_pred ccceec
Q 008294 466 TGETLC 471 (571)
Q Consensus 466 ~Gdtl~ 471 (571)
+||+++
T Consensus 77 ~g~~l~ 82 (83)
T cd01342 77 IGDTLT 82 (83)
T ss_pred CCCEec
Confidence 899875
No 319
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.85 E-value=5.8e-08 Score=98.11 Aligned_cols=151 Identities=20% Similarity=0.223 Sum_probs=101.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~ 167 (571)
..+|.++|..|.||||++|.|+...- .+.....+....-..+++.+......+.-++ ..+++|||||+.|
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l--------~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSL--------VDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhc--------cCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence 57999999999999999999984411 1111111111111344555666555555554 4688999999988
Q ss_pred cHHH--------------HHHHH-------H-------hcCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 168 FTLE--------------VERAL-------R-------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 168 f~~~--------------~~~~l-------~-------~~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
+... ...++ | ..+++++.+-.+ +|+.+.+.+.++.+.+. +.+|-||-|+|
T Consensus 95 ~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vNlIPVI~KaD 173 (373)
T COG5019 95 FIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VNLIPVIAKAD 173 (373)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cCeeeeeeccc
Confidence 5222 11111 1 147788888765 89999999888777654 78899999999
Q ss_pred ccccc-hhhhHHHHHHHhCCcceeeeccCCCC
Q 008294 219 RLGAN-FFRTRDMIVTNLGAKPLVVQLPVGAE 249 (571)
Q Consensus 219 ~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~~ 249 (571)
....+ .....+.|++.+....++++-|...+
T Consensus 174 ~lT~~El~~~K~~I~~~i~~~nI~vf~pyd~e 205 (373)
T COG5019 174 TLTDDELAEFKERIREDLEQYNIPVFDPYDPE 205 (373)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCceeCCCCcc
Confidence 87644 66677778887877777777775443
No 320
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.84 E-value=2.1e-07 Score=96.13 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=55.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC----------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---------------- 154 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~---------------- 154 (571)
.+|++||.+|+|||||+|+|. +.....+. . .++|+......+.+.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt---~~~~~v~n-y--------------pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~ 64 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALT---KAGAEAAN-Y--------------PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIV 64 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCeecc-c--------------ccccccceEEEEEeccccchhhHHhcCCcccc
Confidence 479999999999999999995 33322222 1 2334444333333222
Q ss_pred -eEEEEEcCCCCCC-------cHHHHHHHHHhcCeEEEEEeCC
Q 008294 155 -HRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSV 189 (571)
Q Consensus 155 -~~i~liDTPG~~~-------f~~~~~~~l~~~D~~ilVvda~ 189 (571)
..+.++||||..+ ........++.+|++++|||+.
T Consensus 65 ~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 65 PATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 3699999999764 2335667789999999999995
No 321
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.83 E-value=3.1e-08 Score=102.33 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=63.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhce---eEeeceEEEee-cCeEEEEEcCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGI---TITSAATTTYW-NKHRINIIDTPGH 165 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~---t~~~~~~~~~~-~~~~i~liDTPG~ 165 (571)
..+|||+|.+|+|||||+|+|. |. |.-++|.. ..|+ |... ..+.. +...+++||.||.
T Consensus 35 ~l~IaV~G~sGsGKSSfINalr---Gl----~~~d~~aA---------~tGv~etT~~~--~~Y~~p~~pnv~lWDlPG~ 96 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALR---GL----GHEDEGAA---------PTGVVETTMEP--TPYPHPKFPNVTLWDLPGI 96 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHT---T------TTSTTS-----------SSSHSCCTS---EEEE-SS-TTEEEEEE--G
T ss_pred ceEEEEECCCCCCHHHHHHHHh---CC----CCCCcCcC---------CCCCCcCCCCC--eeCCCCCCCCCeEEeCCCC
Confidence 4699999999999999999995 21 11111110 1121 2221 12222 2236999999997
Q ss_pred CCcHHHHHHH-----HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 166 VDFTLEVERA-----LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 166 ~~f~~~~~~~-----l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
..-.-....+ +..-|.+|++.+. .+...+..+++.+.++++|+.+|-+|+|.
T Consensus 97 gt~~f~~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 97 GTPNFPPEEYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp GGSS--HHHHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred CCCCCCHHHHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 5432233333 4455887776653 56777888889999999999999999995
No 322
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.78 E-value=8.6e-08 Score=92.98 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc--
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f-- 168 (571)
.+|+++|..|+||||++|.|+....... ......+|.........+.+..+++|||||..|-
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~----------------~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~ 64 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKS----------------GSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG 64 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS------------------TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceee----------------ccccCCcccccceeeeeecceEEEEEeCCCCCCCcc
Confidence 4799999999999999999972111000 0011233444445555778999999999997652
Q ss_pred -----HHHHHHHHH----hcCeEEEEEeCCCCCchhHHHHHHHHHh-cC----CCeEEEEecCCcccc
Q 008294 169 -----TLEVERALR----VLDGAICLFDSVAGVEPQSETVWRQADK-YG----VPRICFVNKMDRLGA 222 (571)
Q Consensus 169 -----~~~~~~~l~----~~D~~ilVvda~~g~~~~~~~~~~~~~~-~~----~p~ivviNK~D~~~~ 222 (571)
..++..++. ..+++++|+... .++......++.+.. ++ .-.+||++..|....
T Consensus 65 ~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 65 SDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED 131 (212)
T ss_dssp EHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT
T ss_pred cHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc
Confidence 223333332 358999999987 677777777766654 23 246788898887654
No 323
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.6e-08 Score=90.26 Aligned_cols=115 Identities=18% Similarity=0.168 Sum_probs=81.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++.-++.++|--|||||||++.|- ..+.+. .--|.......+...+.+++-+|..||..
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLK-----dDrl~q----------------hvPTlHPTSE~l~Ig~m~ftt~DLGGH~q 76 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLK-----DDRLGQ----------------HVPTLHPTSEELSIGGMTFTTFDLGGHLQ 76 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHc-----cccccc----------------cCCCcCCChHHheecCceEEEEccccHHH
Confidence 334579999999999999999883 111110 01134444444556888999999999998
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHH----HhcCCCeEEEEecCCccccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQA----DKYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~----~~~~~p~ivviNK~D~~~~~ 223 (571)
-...+..++..+|+++++||+.+.-..+ .+..+..+ .-.++|+++..||+|++.+-
T Consensus 77 Arr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 77 ARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 8888888999999999999998643222 12222222 23589999999999998764
No 324
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.77 E-value=8e-08 Score=96.86 Aligned_cols=140 Identities=20% Similarity=0.204 Sum_probs=81.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~~~ 167 (571)
..||.++|..|.|||||+|.|+........ ...+.......+..++......+..+ ...+++|||||+.+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISED--------SSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS-----------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccccccc--------ccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccc
Confidence 368999999999999999999732111110 00000011122333444444444433 35689999999886
Q ss_pred cHHH--------------HHHHH-------------HhcCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 168 FTLE--------------VERAL-------------RVLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 168 f~~~--------------~~~~l-------------~~~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
.... ...++ ...|++++.++++ +|+.+.+.+.++.+... +++|-|+.|+|.
T Consensus 76 ~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaKaD~ 154 (281)
T PF00735_consen 76 NIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAKADT 154 (281)
T ss_dssp SSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEESTGGG
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEecccc
Confidence 3111 11111 1248899999986 78888888888777655 889999999998
Q ss_pred cccc-hhhhHHHHHHHhCCc
Q 008294 220 LGAN-FFRTRDMIVTNLGAK 238 (571)
Q Consensus 220 ~~~~-~~~~~~~i~~~l~~~ 238 (571)
...+ .....+.|++.+..+
T Consensus 155 lt~~el~~~k~~i~~~l~~~ 174 (281)
T PF00735_consen 155 LTPEELQAFKQRIREDLEEN 174 (281)
T ss_dssp S-HHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHc
Confidence 7643 445555666655433
No 325
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=5.6e-08 Score=101.59 Aligned_cols=153 Identities=18% Similarity=0.234 Sum_probs=104.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
...+|++|++|+|||||+..|+... ..+.-.+....+|+..+ +..+|+|+.|| .| .
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~---------------tk~ti~~i~GPiTvvsg------K~RRiTflEcp--~D-l 124 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRF---------------TKQTIDEIRGPITVVSG------KTRRITFLECP--SD-L 124 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHH---------------HHhhhhccCCceEEeec------ceeEEEEEeCh--HH-H
Confidence 4567899999999999999997321 11111222233454443 56899999999 33 5
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEE-EEecCCccccchhhhHHHHHHHhCCcce-------e
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGANFFRTRDMIVTNLGAKPL-------V 241 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iv-viNK~D~~~~~~~~~~~~i~~~l~~~~~-------~ 241 (571)
..++.....||+++++||++.|+.-.|.+.+..+...+.|.++ |++..|+... ..++.++++.|..... .
T Consensus 125 ~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~--~stLr~~KKrlkhRfWtEiyqGaK 202 (1077)
T COG5192 125 HQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN--PSTLRSIKKRLKHRFWTEIYQGAK 202 (1077)
T ss_pred HHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccC--hHHHHHHHHHHhhhHHHHHcCCce
Confidence 5778888999999999999999999999999999999999875 7899998653 2345555554432111 1
Q ss_pred ee---------ccCCCCCCcceeeecccceeEEecC
Q 008294 242 VQ---------LPVGAEDNFKGVVDLVKMKAIIWSG 268 (571)
Q Consensus 242 ~~---------~pi~~~~~~~~~id~~~~~~~~~~~ 268 (571)
++ +|-.+-.++...|.+++.+.+.|..
T Consensus 203 lFylsgV~nGRYpDreilnLsRfisVMKfRPl~Wrn 238 (1077)
T COG5192 203 LFYLSGVENGRYPDREILNLSRFISVMKFRPLEWRN 238 (1077)
T ss_pred EEEecccccCCCCCHHHHHHHHHHhhhccccccccc
Confidence 11 1222223455556666777777764
No 326
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.76 E-value=8.8e-08 Score=95.79 Aligned_cols=128 Identities=13% Similarity=0.197 Sum_probs=66.9
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecC-cccccchhhhhhhc---eeEeeceEEEe----------
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG-TATMDWMEQEQERG---ITITSAATTTY---------- 151 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g-~~~~d~~~~e~~~g---~t~~~~~~~~~---------- 151 (571)
.......|.|+|.+|+|||||+++++.........+.+... .+..|... -+..| +.+........
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~r-I~~~g~pvvqi~tG~~Chl~a~mv~~Al~ 178 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAAR-IRATGTPAIQVNTGKGCHLDAQMIADAAP 178 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHH-HHhcCCcEEEecCCCCCcCcHHHHHHHHH
Confidence 44568899999999999999999998653222222222111 11112211 12222 22222211111
Q ss_pred ---ecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 152 ---WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 152 ---~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
..+..+.||++-|.--.-.. ..+. .+.-+.|++..+|..... +.-..+..+-++|+||+|+..
T Consensus 179 ~L~~~~~d~liIEnvGnLvcPa~--fdlg-e~~~v~vlsV~eg~dkpl----Kyp~~f~~ADIVVLNKiDLl~ 244 (290)
T PRK10463 179 RLPLDDNGILFIENVGNLVCPAS--FDLG-EKHKVAVLSVTEGEDKPL----KYPHMFAAASLMLLNKVDLLP 244 (290)
T ss_pred HHhhcCCcEEEEECCCCccCCCc--cchh-hceeEEEEECccccccch----hccchhhcCcEEEEEhHHcCc
Confidence 13457889999985211000 0111 133457788877643111 111223567799999999864
No 327
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.72 E-value=1.1e-07 Score=77.41 Aligned_cols=78 Identities=22% Similarity=0.368 Sum_probs=64.9
Q ss_pred CeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Cc
Q 008294 389 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DT 464 (571)
Q Consensus 389 p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~ 464 (571)
||.+.|.+.+... |++..|||.+|++++||.|+..+.+...+|++|.... .++++|.|||.+++ .+++ ++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~----~~~~~a~aGd~v~l~l~~i~~~~v 74 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNED----VEVRYARPGENVRLRLKGIEEEDI 74 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECC----EECCEECCCCEEEEEecCCCHHHC
Confidence 6788888888653 8999999999999999999999988888899886442 78999999999998 3443 37
Q ss_pred cccceecC
Q 008294 465 ITGETLCD 472 (571)
Q Consensus 465 ~~Gdtl~~ 472 (571)
..|+.||+
T Consensus 75 ~~G~vl~~ 82 (82)
T cd04089 75 SPGFVLCS 82 (82)
T ss_pred CCCCEEeC
Confidence 78998874
No 328
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.70 E-value=7.5e-08 Score=93.41 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=84.3
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
+|..+.+.+++.|.+|+|||+|+|.++.... +...++. ..|-|.... +..-+..+.++|.||
T Consensus 131 ~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~-~~~t~k~--------------K~g~Tq~in---~f~v~~~~~~vDlPG 192 (320)
T KOG2486|consen 131 CPKDKRPELAFYGRSNVGKSSLLNDLVRVKN-IADTSKS--------------KNGKTQAIN---HFHVGKSWYEVDLPG 192 (320)
T ss_pred CCCCCCceeeeecCCcccHHHHHhhhhhhhh-hhhhcCC--------------CCccceeee---eeeccceEEEEecCC
Confidence 4556678999999999999999999973211 1111110 234444333 333467899999999
Q ss_pred CC----------CcHHHHHHHH---HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 165 HV----------DFTLEVERAL---RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~----------~f~~~~~~~l---~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+. |+...+..++ +..=.+++++|+.-+++..+...+.++.+.++|+.+|+||||+..
T Consensus 193 ~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 193 YGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQK 262 (320)
T ss_pred cccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhh
Confidence 42 2333333333 233457889999999999999999999999999999999999753
No 329
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.70 E-value=6.5e-08 Score=90.79 Aligned_cols=112 Identities=15% Similarity=0.087 Sum_probs=71.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe---ecCeEEEEEcCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY---WNKHRINIIDTPGHV 166 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~---~~~~~i~liDTPG~~ 166 (571)
...+++||..++|||.|+-.+............+. +.....+. .....+.||||.|++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-------------------dnys~~v~V~dg~~v~L~LwDTAGqe 64 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-------------------DNYSANVTVDDGKPVELGLWDTAGQE 64 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-------------------ccceEEEEecCCCEEEEeeeecCCCc
Confidence 46889999999999999987752111111111111 11111122 234568999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhH-HHHH-HHHHhc--CCCeEEEEecCCcc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVW-RQADKY--GVPRICFVNKMDRL 220 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~-~~~~~~--~~p~ivviNK~D~~ 220 (571)
+|-.-...++..+|.++++++......... ...| -.++.+ ++|+|+|.+|.|+.
T Consensus 65 dYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 65 DYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred ccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 997755568889999999898765443322 1122 233333 79999999999986
No 330
>PTZ00258 GTP-binding protein; Provisional
Probab=98.66 E-value=1.2e-07 Score=99.07 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=59.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--------------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------------- 153 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-------------- 153 (571)
.+...|+|||.+|+|||||+|+|. +.....+.. .++|+......+.+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt---~~~~~v~n~---------------pftTi~p~~g~v~~~d~r~~~l~~~~~~~ 80 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALC---KQQVPAENF---------------PFCTIDPNTARVNVPDERFDWLCKHFKPK 80 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHh---cCcccccCC---------------CCCcccceEEEEecccchhhHHHHHcCCc
Confidence 445689999999999999999994 332222221 234555554444443
Q ss_pred ---CeEEEEEcCCCCCC-------cHHHHHHHHHhcCeEEEEEeCC
Q 008294 154 ---KHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSV 189 (571)
Q Consensus 154 ---~~~i~liDTPG~~~-------f~~~~~~~l~~~D~~ilVvda~ 189 (571)
..++.++||||... ........++.+|++++|||+.
T Consensus 81 ~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 81 SIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred ccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 34599999999754 3345677889999999999985
No 331
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=8.9e-09 Score=104.70 Aligned_cols=130 Identities=34% Similarity=0.362 Sum_probs=103.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCccee--------------eeeecCcccccchhhhhhhceeEeeceEEEeec
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI--------------GEVHEGTATMDWMEQEQERGITITSAATTTYWN 153 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~--------------g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~ 153 (571)
+..+||+++||.++||||+.. +..|.+..+ |+. .....+|...-|+++|+++......+...
T Consensus 5 ~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf-~~a~~~dk~~ae~~r~i~I~~~l~~~~t~ 80 (391)
T KOG0052|consen 5 KIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSF-KYAWVLDKLKAERERGITIDIALWKFETS 80 (391)
T ss_pred ccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhcccee-eeeeeechhhhccccceEEEEEeecccce
Confidence 346899999999999999887 333433321 221 12366788889999999988888888778
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCCe-EEEEecCCccc
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPR-ICFVNKMDRLG 221 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~ 221 (571)
.+.+++||.|||.+|...+.....++|.+++.|.+..| ...|++++...+..+++.. ++.+||+|-..
T Consensus 81 k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 81 KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred eEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 89999999999999999999999999999999988432 3579999999999887654 56699999754
No 332
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.63 E-value=9.1e-08 Score=95.71 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=53.9
Q ss_pred EEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-----------------e
Q 008294 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-----------------H 155 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-----------------~ 155 (571)
|+|||.+|+|||||+|+|. +.....+. . .++|+......+.+.+ .
T Consensus 1 igivG~PN~GKSTLfn~Lt---~~~~~~~n-~--------------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~ 62 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALT---KAGAEAAN-Y--------------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPA 62 (274)
T ss_pred CeEeCCCCCcHHHHHHHHh---CCCCcccc-c--------------cccchhceeeeEEeccchhhhHHHHhCCceeeee
Confidence 5899999999999999995 33222221 1 2334444443333322 3
Q ss_pred EEEEEcCCCCCC-------cHHHHHHHHHhcCeEEEEEeCC
Q 008294 156 RINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSV 189 (571)
Q Consensus 156 ~i~liDTPG~~~-------f~~~~~~~l~~~D~~ilVvda~ 189 (571)
.+.++||||..+ ........++.+|++++|||+.
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 599999999764 2335666789999999999985
No 333
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.62 E-value=2.8e-07 Score=74.79 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=63.8
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCCCcccc
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITG 467 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~~G 467 (571)
|++.|...+.....|+...|||.+|++++||+|+..+.+...+|+.|...+ .++++|.|||.++| .+-+++.+|
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~----~~~~~a~aGd~v~l~l~~~~~i~~G 76 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFD----GELDEAGAGESVTLTLEDEIDVSRG 76 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEECC----cEeCEEcCCCEEEEEECCccccCCC
Confidence 356677777666667789999999999999999999988888899986443 77999999999988 333457889
Q ss_pred ceec
Q 008294 468 ETLC 471 (571)
Q Consensus 468 dtl~ 471 (571)
++||
T Consensus 77 ~vl~ 80 (81)
T cd03695 77 DVIV 80 (81)
T ss_pred CEEe
Confidence 9887
No 334
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=4.9e-07 Score=92.24 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=95.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~ 167 (571)
-.++.++|..|.|||||+|.|+...-. +....+..+......+.+......++-++ .+++++||||..|
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~---------~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLS---------GNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhcc---------CCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence 479999999999999999999743110 00001111122222344444444444444 4678999999988
Q ss_pred cHHH--------------HHHHH-----------H--hcCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 168 FTLE--------------VERAL-----------R--VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 168 f~~~--------------~~~~l-----------~--~~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
+... ...++ . ..+++++.+... +|+.+.+.+.++.+.. .+.+|-||-|.|.
T Consensus 92 ~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 92 AVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADT 170 (366)
T ss_pred cccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeecccc
Confidence 4211 12222 1 357888888775 7899999888777654 4788999999998
Q ss_pred cccc-hhhhHHHHHHHhCCcceeeecc
Q 008294 220 LGAN-FFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 220 ~~~~-~~~~~~~i~~~l~~~~~~~~~p 245 (571)
...+ .....+.|.+.+....++++.|
T Consensus 171 lT~~El~~~K~~I~~~i~~~nI~vf~f 197 (366)
T KOG2655|consen 171 LTKDELNQFKKRIRQDIEEHNIKVFDF 197 (366)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcceecC
Confidence 7654 5666777777777766666543
No 335
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.61 E-value=2.5e-07 Score=75.56 Aligned_cols=78 Identities=26% Similarity=0.327 Sum_probs=64.8
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Ccc
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTI 465 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~ 465 (571)
|.+.|.++|..++.|.+..|||.+|++++||.+...+.+...+|++|... .+++++|.|||.+++ .+++ ++.
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~----~~~~~~a~aGd~v~i~l~~~~~~~i~ 76 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVH----GKDVEEAKAGDRVALNLTGVDAKDLE 76 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEEC----CcCcCEEcCCCEEEEEEcCCCHHHcC
Confidence 45778888888889999999999999999999999888877788888644 378999999999998 3442 467
Q ss_pred ccceec
Q 008294 466 TGETLC 471 (571)
Q Consensus 466 ~Gdtl~ 471 (571)
.|++||
T Consensus 77 ~G~vl~ 82 (83)
T cd03696 77 RGDVLS 82 (83)
T ss_pred CccEEc
Confidence 888886
No 336
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=2.1e-06 Score=81.55 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=82.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~ 167 (571)
-.||.+||.+|.|||||+|.|... +.....+. +...+-....+.+......++.++ .++++|||||+.|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s-~v~~~s~~--------~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKS-HVSDSSSS--------DNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHH-HHhhccCC--------CcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 579999999999999999999622 11111111 111111111223333333344444 4689999999988
Q ss_pred cHH--------------HHHHHHH--------------hcCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 168 FTL--------------EVERALR--------------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 168 f~~--------------~~~~~l~--------------~~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
+.. +...+++ ..+++++.+.++ +.+.+.+.+.+..+.+. +.++-||-|.|
T Consensus 117 qInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIakaD 195 (336)
T KOG1547|consen 117 QINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAKAD 195 (336)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEeecc
Confidence 411 1122221 136777778775 66778888877666543 56778899999
Q ss_pred ccccc-hhhhHHHHHHHhCCcc
Q 008294 219 RLGAN-FFRTRDMIVTNLGAKP 239 (571)
Q Consensus 219 ~~~~~-~~~~~~~i~~~l~~~~ 239 (571)
-..-+ .....++|++.|-.+.
T Consensus 196 tlTleEr~~FkqrI~~el~~~~ 217 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIRKELEKHG 217 (336)
T ss_pred cccHHHHHHHHHHHHHHHHhcC
Confidence 76533 3344556666664433
No 337
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.60 E-value=2.7e-07 Score=76.07 Aligned_cols=80 Identities=25% Similarity=0.272 Sum_probs=64.1
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCC--CceeecceEEEeccCceeecCeecCCCEEEE--eCCC--C
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--D 463 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~ 463 (571)
|++.|...+..+++|.+..|||.+|++++||.|+..+. +...+|++|... ..++++|.|||.+++ .+++ +
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~ 76 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMF----RKTLDEAEAGDNVGVLLRGVKRED 76 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEEC----CcCCCEECCCCEEEEEECCCCHHH
Confidence 35677777777888999999999999999999987653 456678887644 378999999999998 4443 3
Q ss_pred ccccceecCC
Q 008294 464 TITGETLCDA 473 (571)
Q Consensus 464 ~~~Gdtl~~~ 473 (571)
+.+|++||++
T Consensus 77 v~rG~vl~~~ 86 (87)
T cd03697 77 VERGMVLAKP 86 (87)
T ss_pred cCCccEEecC
Confidence 7889999875
No 338
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.60 E-value=1.4e-07 Score=98.01 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=71.2
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
....+++.++|.+|+|||+++|.+. .. ...+.+.. -+|-..-..++.++-.++++|||||.-
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vt---ra---dvevqpYa------------FTTksL~vGH~dykYlrwQViDTPGIL 226 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVT---RA---DDEVQPYA------------FTTKLLLVGHLDYKYLRWQVIDTPGIL 226 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhccccc---cc---ccccCCcc------------cccchhhhhhhhhheeeeeecCCcccc
Confidence 4467899999999999999998874 11 11111111 123334444556666789999999976
Q ss_pred Cc------HHH--HHHHHHhc-CeEEEEEeCCC--CCchhHH-HHHHHHH--hcCCCeEEEEecCCccc
Q 008294 167 DF------TLE--VERALRVL-DGAICLFDSVA--GVEPQSE-TVWRQAD--KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f------~~~--~~~~l~~~-D~~ilVvda~~--g~~~~~~-~~~~~~~--~~~~p~ivviNK~D~~~ 221 (571)
|- .-+ .+.++.-. -+++++.|.++ |...... .++...+ -.+.|.|+|+||+|...
T Consensus 227 D~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~ 295 (620)
T KOG1490|consen 227 DRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMR 295 (620)
T ss_pred CcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccC
Confidence 62 111 22233222 35778888874 4332222 2223332 24899999999999765
No 339
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.59 E-value=1.1e-06 Score=77.55 Aligned_cols=115 Identities=18% Similarity=0.190 Sum_probs=76.6
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEe-eceEEEee---cCeEEEEEcCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITIT-SAATTTYW---NKHRINIIDTPG 164 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~-~~~~~~~~---~~~~i~liDTPG 164 (571)
+.-+++++|.-++|||++++.|++-..... +.... |+. ....+++. -...+.|.||.|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~--------~e~~p----------TiEDiY~~svet~rgarE~l~lyDTaG 69 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPG--------TELHP----------TIEDIYVASVETDRGAREQLRLYDTAG 69 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCC--------Ccccc----------chhhheeEeeecCCChhheEEEeeccc
Confidence 355789999999999999999996443221 11111 111 11112221 135688999999
Q ss_pred CCCcHHHHH-HHHHhcCeEEEEEeCCCCCchhHHHHHHHHH-----hcCCCeEEEEecCCccc
Q 008294 165 HVDFTLEVE-RALRVLDGAICLFDSVAGVEPQSETVWRQAD-----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~-~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~-----~~~~p~ivviNK~D~~~ 221 (571)
..+...+.- .++..+|+.++|.|..+.-..+-.+.+..-. +..+|+++..||+|+..
T Consensus 70 lq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~ 132 (198)
T KOG3883|consen 70 LQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE 132 (198)
T ss_pred ccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc
Confidence 999855544 4667789999999998766666655554322 24689999999999853
No 340
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.59 E-value=2.5e-07 Score=85.11 Aligned_cols=51 Identities=20% Similarity=0.165 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
......++.+|++++|+|+.++...+...+...+...++|+++|+||+|+.
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 344556677999999999988776666666666666789999999999975
No 341
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.57 E-value=4.8e-07 Score=74.54 Aligned_cols=79 Identities=22% Similarity=0.176 Sum_probs=63.5
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCC----ceeecceEEEeccCceeecCeecCCCEEEE--eCCC-
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG----KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 462 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~----~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~- 462 (571)
|.+.|.+.|..++.|.+..|||.+|++++||.++..+.+ ...+|++|... ..++++|.|||.+++ .+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~ 76 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRN----RSPVRVVRAGQSASLALKKIDR 76 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEEC----CeECCEECCCCEEEEEEcCCCH
Confidence 356777788778899999999999999999999998863 46677777543 488999999999998 4443
Q ss_pred -CccccceecC
Q 008294 463 -DTITGETLCD 472 (571)
Q Consensus 463 -~~~~Gdtl~~ 472 (571)
++.+|++||.
T Consensus 77 ~~i~~G~vl~~ 87 (87)
T cd03694 77 SLLRKGMVLVS 87 (87)
T ss_pred HHcCCccEEeC
Confidence 3778988873
No 342
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.57 E-value=3.3e-07 Score=90.61 Aligned_cols=115 Identities=20% Similarity=0.172 Sum_probs=72.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-ecCeEEEEEcCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGHV 166 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~liDTPG~~ 166 (571)
...+.|++||.+|+|||||+++|. ++.. .+..... -|.+....... -.+..+.+.||-|+.
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT---~Aal-----~p~drLF----------ATLDpT~h~a~Lpsg~~vlltDTvGFi 237 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALT---KAAL-----YPNDRLF----------ATLDPTLHSAHLPSGNFVLLTDTVGFI 237 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHH---hhhc-----Cccchhh----------eeccchhhhccCCCCcEEEEeechhhh
Confidence 446899999999999999999996 2110 1100000 01111111111 145678899999975
Q ss_pred Cc--------HHHHHHHHHhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCCCe-------EEEEecCCcc
Q 008294 167 DF--------TLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGVPR-------ICFVNKMDRL 220 (571)
Q Consensus 167 ~f--------~~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~p~-------ivviNK~D~~ 220 (571)
.- ...+..-...+|+++.|+|.++.. ..|...++..+...++|- +=|=||+|..
T Consensus 238 sdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 238 SDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred hhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 42 223444566789999999999864 456667788888888862 3345677753
No 343
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.55 E-value=8.9e-07 Score=82.24 Aligned_cols=124 Identities=16% Similarity=0.134 Sum_probs=64.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCc-ccccchhhhhhhcee---EeeceEE-Ee-------------
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT-ATMDWMEQEQERGIT---ITSAATT-TY------------- 151 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~-~~~d~~~~e~~~g~t---~~~~~~~-~~------------- 151 (571)
.+.|.+.|++|+|||||+.+++.......+.+-+...- +..|.....+..|.- +.+...+ ..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 58999999999999999999986554333333222111 111221111112221 1111111 00
Q ss_pred -ecCeEEEEEcCCCCCCcHHHHHHHHHhcC-eEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 152 -WNKHRINIIDTPGHVDFTLEVERALRVLD-GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 152 -~~~~~i~liDTPG~~~f~~~~~~~l~~~D-~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.....+.||.+.| +...- .+....| .-|+|+|..+|...--.-.-. .-.--++||||.|+..
T Consensus 93 ~~~~~Dll~iEs~G--NL~~~--~sp~L~d~~~v~VidvteGe~~P~K~gP~----i~~aDllVInK~DLa~ 156 (202)
T COG0378 93 DFPDLDLLFIESVG--NLVCP--FSPDLGDHLRVVVIDVTEGEDIPRKGGPG----IFKADLLVINKTDLAP 156 (202)
T ss_pred cCCcCCEEEEecCc--ceecc--cCcchhhceEEEEEECCCCCCCcccCCCc----eeEeeEEEEehHHhHH
Confidence 0225788999988 21111 1112334 789999999875421110000 0012379999999864
No 344
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.40 E-value=5.5e-06 Score=90.26 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=69.9
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+.....+|+++|.+|+||||++|+|+..... ..... ..++|. .......+.+..+++|||||.
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf--~vss~--------------~~~TTr-~~ei~~~idG~~L~VIDTPGL 176 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKF--STDAF--------------GMGTTS-VQEIEGLVQGVKIRVIDTPGL 176 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccc--cccCC--------------CCCceE-EEEEEEEECCceEEEEECCCC
Confidence 3445578999999999999999999722110 11100 112222 223334557889999999998
Q ss_pred CCcH------HHH----HHHHH--hcCeEEEEEeCCCC-CchhHHHHHHHHHh-cC----CCeEEEEecCCccc
Q 008294 166 VDFT------LEV----ERALR--VLDGAICLFDSVAG-VEPQSETVWRQADK-YG----VPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~------~~~----~~~l~--~~D~~ilVvda~~g-~~~~~~~~~~~~~~-~~----~p~ivviNK~D~~~ 221 (571)
.+.. .++ ...+. ..|++|+|+..... ........++.+.. ++ .-.|||++..|...
T Consensus 177 ~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 177 KSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 8641 122 22333 36888888765422 11233334444432 22 35688999999864
No 345
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=9.9e-07 Score=80.80 Aligned_cols=117 Identities=21% Similarity=0.183 Sum_probs=81.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
..+.++++|..|.||||++++.+ +|...+.... .-|+........-..+..+++.|||.|++.|
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~l--tgeFe~~y~a--------------t~Gv~~~pl~f~tn~g~irf~~wdtagqEk~ 72 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHL--TGEFEKTYPA--------------TLGVEVHPLLFDTNRGQIRFNVWDTAGQEKK 72 (216)
T ss_pred ceEEEEEecCCcccccchhhhhh--cccceecccC--------------cceeEEeeeeeecccCcEEEEeeecccceee
Confidence 47899999999999999999998 4433332211 1133332222222224489999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH--HHHH-hcCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW--RQAD-KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~--~~~~-~~~~p~ivviNK~D~~~ 221 (571)
......++-.+.++|+++|....++-+....| ..++ ..++|++++.||.|-..
T Consensus 73 gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 73 GGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA 128 (216)
T ss_pred cccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc
Confidence 88877788888999999999876665554443 2232 24689999999999644
No 346
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.31 E-value=2.8e-06 Score=78.22 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=40.1
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh--cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~ivviNK~D~~~ 221 (571)
+..++..+|.+++|+|+.+........+.+.+.. .++|+++|+||+|+..
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~ 53 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVP 53 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCC
Confidence 4678899999999999998766666666666654 3489999999999853
No 347
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.31 E-value=5.3e-06 Score=76.53 Aligned_cols=125 Identities=22% Similarity=0.154 Sum_probs=66.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhc-CCcceeeeeecCcccccchhhhh--hhceeEeeceEEEee----------------
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYT-GRNYKIGEVHEGTATMDWMEQEQ--ERGITITSAATTTYW---------------- 152 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~-g~~~~~g~~~~g~~~~d~~~~e~--~~g~t~~~~~~~~~~---------------- 152 (571)
.++++|..|+|||||+++++... +.....-..+.|....|...... ..-+.+......+..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~~ 81 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERLD 81 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHHH
Confidence 57899999999999999998542 11110000012222222211111 011223333333221
Q ss_pred ---cCeEEEEEcCCCCCCcHHHH--------HHHHHhcCeEEEEEeCCCCCchh--HHHHHHHHHhcCCCeEEEEecCCc
Q 008294 153 ---NKHRINIIDTPGHVDFTLEV--------ERALRVLDGAICLFDSVAGVEPQ--SETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 153 ---~~~~i~liDTPG~~~f~~~~--------~~~l~~~D~~ilVvda~~g~~~~--~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
...++.+|||||..+-.... .......|.++.+||+....... ......++.. --++|+||+|+
T Consensus 82 ~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~---ad~ivlnk~dl 158 (158)
T cd03112 82 AGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF---ADRILLNKTDL 158 (158)
T ss_pred hccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH---CCEEEEecccC
Confidence 24578999999987632222 22334569999999997533221 1112233333 33889999995
No 348
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.28 E-value=6.2e-06 Score=78.84 Aligned_cols=203 Identities=15% Similarity=0.217 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc--
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f-- 168 (571)
-+|++||.+.+|||||+..+. ..-+...+.+ -+|.......+.+++..|+++|.||...-
T Consensus 63 aRValIGfPSVGKStlLs~iT---~T~SeaA~ye---------------FTTLtcIpGvi~y~ga~IQllDLPGIieGAs 124 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKIT---STHSEAASYE---------------FTTLTCIPGVIHYNGANIQLLDLPGIIEGAS 124 (364)
T ss_pred eEEEEecCCCccHHHHHHHhh---cchhhhhcee---------------eeEEEeecceEEecCceEEEecCcccccccc
Confidence 579999999999999999995 2111111110 12555555567778999999999997653
Q ss_pred -----HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhc------CCCeEEEE-ecCCccc--------cchhhh
Q 008294 169 -----TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY------GVPRICFV-NKMDRLG--------ANFFRT 227 (571)
Q Consensus 169 -----~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~------~~p~ivvi-NK~D~~~--------~~~~~~ 227 (571)
..++....+.||++++|.||+.... -++.+ ..+... ..|-|-+- .|.--.. .--+..
T Consensus 125 qgkGRGRQviavArtaDlilMvLDatk~e~--qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~ 202 (364)
T KOG1486|consen 125 QGKGRGRQVIAVARTADLILMVLDATKSED--QREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKL 202 (364)
T ss_pred cCCCCCceEEEEeecccEEEEEecCCcchh--HHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHH
Confidence 3346667788999999999986422 22222 233322 23444332 1111110 001344
Q ss_pred HHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHH
Q 008294 228 RDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAM 307 (571)
Q Consensus 228 ~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~ 307 (571)
+..|...+.++.+.+ -+.++-....+||++.....|... -+...-+
T Consensus 203 i~~ILheykI~Naev--l~ReD~t~DdfIDvi~gnr~Y~~C-----lYvYnKI--------------------------- 248 (364)
T KOG1486|consen 203 IYTILHEYKIHNAEV--LFREDCTVDDFIDVIEGNRVYIKC-----LYVYNKI--------------------------- 248 (364)
T ss_pred HHHHHHHHeeccceE--EEecCCChHHHHHHHhccceEEEE-----EEEeecc---------------------------
Confidence 555555555444332 234455555667777654443322 1111111
Q ss_pred HHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCC
Q 008294 308 ESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLP 360 (571)
Q Consensus 308 e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP 360 (571)
.+++.+|+-+..++ - .-+.+|+-.+.|++.|++.|.+.+-
T Consensus 249 ------D~vs~eevdrlAr~----P---nsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 249 ------DQVSIEEVDRLARQ----P---NSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred ------ceecHHHHHHHhcC----C---CcEEEEeccccCHHHHHHHHHHHhc
Confidence 12344444333221 0 1234588899999999999998874
No 349
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.27 E-value=4.3e-06 Score=87.06 Aligned_cols=130 Identities=19% Similarity=0.222 Sum_probs=74.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc----CCcceeeeeecCcccccchhhhh------hhceeEeeceEE-------E
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTATMDWMEQEQ------ERGITITSAATT-------T 150 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~----g~~~~~g~~~~g~~~~d~~~~e~------~~g~t~~~~~~~-------~ 150 (571)
.+..+++++|++|+||||++..|.... |. .+.+-+... ++ .....|+ ..|+.+...... -
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D-~~-R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~ 211 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTD-SY-RIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA 211 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecc-cc-cccHHHHHHHHHHHcCCceEecCCcccHHHHHH
Confidence 345689999999999999999997432 21 111111110 00 0011121 123333222111 1
Q ss_pred eecCeEEEEEcCCCCCC---cHHHHHHHHHhc---CeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-------EEEEecC
Q 008294 151 YWNKHRINIIDTPGHVD---FTLEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPR-------ICFVNKM 217 (571)
Q Consensus 151 ~~~~~~i~liDTPG~~~---f~~~~~~~l~~~---D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-------ivviNK~ 217 (571)
.+.++.+.||||||... +..+....+..+ +-.++|++++.+....+...+......++|. =+|++|+
T Consensus 212 ~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKl 291 (374)
T PRK14722 212 ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKL 291 (374)
T ss_pred HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecc
Confidence 23578999999999764 344445555444 3458999999876666655555544443332 4788999
Q ss_pred Ccc
Q 008294 218 DRL 220 (571)
Q Consensus 218 D~~ 220 (571)
|-.
T Consensus 292 DEt 294 (374)
T PRK14722 292 DEA 294 (374)
T ss_pred ccC
Confidence 964
No 350
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.24 E-value=9.9e-06 Score=85.68 Aligned_cols=129 Identities=18% Similarity=0.155 Sum_probs=69.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCc-ccccchh-hhhhhceeEeeceEEE-------------e
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDWME-QEQERGITITSAATTT-------------Y 151 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~-~~~d~~~-~e~~~g~t~~~~~~~~-------------~ 151 (571)
...|+++|..|+||||++..|.... |........+... ...+... .....++.+......- .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999996332 3211111111111 1111111 1112233222110000 0
Q ss_pred ecCeEEEEEcCCCCCCcHHHHHHHHH------hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 152 WNKHRINIIDTPGHVDFTLEVERALR------VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~~~~~~~l~------~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
..++.+.||||||...........+. ..|-++||+|+..|... ....+...+.--+.-+|+||+|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 13689999999997654333333222 34789999999876443 223333333333567899999964
No 351
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.24 E-value=1.8e-06 Score=81.51 Aligned_cols=122 Identities=15% Similarity=0.190 Sum_probs=80.5
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~ 167 (571)
+.++|.++|.+|+|||++=..+..+--+ .+-...|-|++....+..+ ++..+++||+.|+..
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a-----------------~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~ 65 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIA-----------------RDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE 65 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhh-----------------hhhhccCCcceeeehhhhhhhhheeehhccCCcHH
Confidence 3578999999999999998877521100 0112234466665555544 557899999999988
Q ss_pred cHHHHHH-----HHHhcCeEEEEEeCCCCCchhHHHHHH----HHHhc--CCCeEEEEecCCccccchhhh
Q 008294 168 FTLEVER-----ALRVLDGAICLFDSVAGVEPQSETVWR----QADKY--GVPRICFVNKMDRLGANFFRT 227 (571)
Q Consensus 168 f~~~~~~-----~l~~~D~~ilVvda~~g~~~~~~~~~~----~~~~~--~~p~ivviNK~D~~~~~~~~~ 227 (571)
|.....+ -++..++.++|+|+.......+....+ .+.+. ...+++.+.|+|+...+..+.
T Consensus 66 fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~ 136 (295)
T KOG3886|consen 66 FMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDAREL 136 (295)
T ss_pred HHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHH
Confidence 7655444 567789999999997544444433333 33332 345688899999987664443
No 352
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.24 E-value=1.1e-05 Score=65.92 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=59.9
Q ss_pred EEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCC---ceeecceEEEeccCceeecCeecCCCEEEE--eCCCCccc
Q 008294 392 GLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTIT 466 (571)
Q Consensus 392 ~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~~ 466 (571)
+.|..+|.....|.++.+||-+|++++|+.+...+.+ ..-+|.+|... ..++++|.+|+-|.| .+++++..
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~----~~~v~~a~~G~ecgi~l~~~~d~~~ 78 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRF----KDDVKEVKKGYECGITLENFNDIKV 78 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEc----CcccCEECCCCEEEEEEeCcccCCC
Confidence 3455555555668999999999999999999998887 44567776654 388999999999988 56778888
Q ss_pred ccee
Q 008294 467 GETL 470 (571)
Q Consensus 467 Gdtl 470 (571)
||+|
T Consensus 79 Gdvi 82 (84)
T cd03692 79 GDII 82 (84)
T ss_pred CCEE
Confidence 9886
No 353
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.24 E-value=6.9e-06 Score=84.08 Aligned_cols=143 Identities=18% Similarity=0.180 Sum_probs=85.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC-CcceeeeeecCccccc---chhhhhhhceeEeeceEEEee-------------
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG-RNYKIGEVHEGTATMD---WMEQEQERGITITSAATTTYW------------- 152 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g-~~~~~g~~~~g~~~~d---~~~~e~~~g~t~~~~~~~~~~------------- 152 (571)
++...+.|..|+|||||+++|+.+.. .....--.+.|..-.| ......+.-..+..++++|+.
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~ 80 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR 80 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh
Confidence 35778999999999999999996544 2222111111211112 111122224567777788773
Q ss_pred --cCeEEEEEcCCCCCCcHHHHHH--------HHHhcCeEEEEEeCCCCCchhH---HHHHHHHHhcCCCeEEEEecCCc
Q 008294 153 --NKHRINIIDTPGHVDFTLEVER--------ALRVLDGAICLFDSVAGVEPQS---ETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 153 --~~~~i~liDTPG~~~f~~~~~~--------~l~~~D~~ilVvda~~g~~~~~---~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
+.....+|.|-|..+=...+.. ..-..|++|-|||+.+...... .....++.. --++++||.|+
T Consensus 81 ~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD~ivlNK~Dl 157 (323)
T COG0523 81 RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---ADVIVLNKTDL 157 (323)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---CcEEEEecccC
Confidence 4567899999998874333322 2233488999999987655433 223333333 33899999999
Q ss_pred cccchhhhHHHHHHHh
Q 008294 220 LGANFFRTRDMIVTNL 235 (571)
Q Consensus 220 ~~~~~~~~~~~i~~~l 235 (571)
......+.++...+.+
T Consensus 158 v~~~~l~~l~~~l~~l 173 (323)
T COG0523 158 VDAEELEALEARLRKL 173 (323)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8866333333333333
No 354
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.23 E-value=1.1e-05 Score=73.51 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=40.5
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
.++.+.||||||... .....+..+|.+++|+....+ +-..+.....+..--++++||+|
T Consensus 90 ~~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~----D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAG----DDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCch----hHHHHhhhhHhhhcCEEEEeCCC
Confidence 468999999999653 445689999999999977522 22222222333445599999998
No 355
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.19 E-value=5.2e-06 Score=77.66 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=43.5
Q ss_pred CCCCC-CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 162 TPGHV-DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 162 TPG~~-~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
-|||. ....++...+..+|.+++|+|+.++.......++..+ .+.|.++|+||+|+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 36764 3567788899999999999999877665544444433 368999999999985
No 356
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.18 E-value=1.4e-05 Score=82.03 Aligned_cols=143 Identities=20% Similarity=0.183 Sum_probs=80.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc-CCcceeeeeecCcccccchhhhh--hhceeEeeceEEEeec------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT-GRNYKIGEVHEGTATMDWMEQEQ--ERGITITSAATTTYWN------------ 153 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~-g~~~~~g~~~~g~~~~d~~~~e~--~~g~t~~~~~~~~~~~------------ 153 (571)
+++...+.|..|+|||||+|+|+... |.....-..+.|..-.|..-... ..-.++..++++|...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 57889999999999999999999543 21111111122322223221111 1123455566666531
Q ss_pred -------CeEEEEEcCCCCCCcHHHHHHHH--------HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 154 -------KHRINIIDTPGHVDFTLEVERAL--------RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 154 -------~~~i~liDTPG~~~f~~~~~~~l--------~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
.....+|.|.|..+-.......+ -..|++|.|||+.......... .....+...--+|++||+|
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~-~~~~~Qi~~AD~IvlnK~D 161 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQF-TIAQSQVGYADRILLTKTD 161 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcccc-HHHHHHHHhCCEEEEeccc
Confidence 25679999999988433322211 1248899999998643321111 0111222234489999999
Q ss_pred ccccchhhhHHHHHH
Q 008294 219 RLGANFFRTRDMIVT 233 (571)
Q Consensus 219 ~~~~~~~~~~~~i~~ 233 (571)
+.... .++.+.++.
T Consensus 162 l~~~~-~~~~~~l~~ 175 (318)
T PRK11537 162 VAGEA-EKLRERLAR 175 (318)
T ss_pred cCCHH-HHHHHHHHH
Confidence 98753 444455544
No 357
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.17 E-value=9.4e-06 Score=71.88 Aligned_cols=115 Identities=19% Similarity=0.185 Sum_probs=81.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|....|||||+-..+.... | .+-++..|+...-...++......+.+||..|+.+|.
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~---------------d-e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~ 83 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEY---------------D-EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFI 83 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchh---------------H-HHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhh
Confidence 46899999999999999988761100 0 1223445655544444444455678899999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHhcCCCe--EEEEecCCcc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADKYGVPR--ICFVNKMDRL 220 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~~~~p~--ivviNK~D~~ 220 (571)
...--+...+-++++++|-+..-+-....- .++++..+... |+|.+|-|+.
T Consensus 84 n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 84 NMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred ccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhh
Confidence 888888888899999999987555444433 46777665443 5788999964
No 358
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.15 E-value=6.3e-06 Score=78.45 Aligned_cols=55 Identities=13% Similarity=-0.129 Sum_probs=40.8
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+..|...+..+++.+|++++|+|+.+........++ ....++|+++|+||+|+..
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~--~~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--LFGGNNPVILVGNKIDLLP 75 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCCccchhHH--HhcCCCcEEEEEEchhcCC
Confidence 333677888889999999999999875544443332 2235789999999999864
No 359
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=1.5e-05 Score=80.30 Aligned_cols=144 Identities=23% Similarity=0.234 Sum_probs=92.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCc----ccccchhhhhhhceeEeeceE-EEe----e------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAAT-TTY----W------ 152 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~----~~~d~~~~e~~~g~t~~~~~~-~~~----~------ 152 (571)
...+-|.++|.-..||||+++.|+.+...-.++|.- +-+ .+|.-..++.-.|.+..+..- .+. +
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpE-PTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPE-PTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCC-CCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 445789999999999999999998554322222221 100 112112222333333222100 000 0
Q ss_pred -------c---CeEEEEEcCCCC-----------CCcHHHHHHHHHhcCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCe
Q 008294 153 -------N---KHRINIIDTPGH-----------VDFTLEVERALRVLDGAICLFDSV-AGVEPQSETVWRQADKYGVPR 210 (571)
Q Consensus 153 -------~---~~~i~liDTPG~-----------~~f~~~~~~~l~~~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ 210 (571)
. =..+++|||||. .+|..........+|.+++++|+. -.+.....+++..++...-.+
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edki 214 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKI 214 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCccee
Confidence 0 136999999995 357777888889999999999997 356778888999999888888
Q ss_pred EEEEecCCccccc-hhhhHHHHH
Q 008294 211 ICFVNKMDRLGAN-FFRTRDMIV 232 (571)
Q Consensus 211 ivviNK~D~~~~~-~~~~~~~i~ 232 (571)
=||+||.|....+ +-++.-.+.
T Consensus 215 RVVLNKADqVdtqqLmRVyGALm 237 (532)
T KOG1954|consen 215 RVVLNKADQVDTQQLMRVYGALM 237 (532)
T ss_pred EEEeccccccCHHHHHHHHHHHH
Confidence 8999999987643 334444333
No 360
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.15 E-value=5e-05 Score=78.04 Aligned_cols=130 Identities=16% Similarity=0.106 Sum_probs=68.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCccc----ccc-hhhhhhhceeEeeceEE-------------E
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTAT----MDW-MEQEQERGITITSAATT-------------T 150 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~----~d~-~~~e~~~g~t~~~~~~~-------------~ 150 (571)
....|+++|++|+||||++..|...........-+....++ .+. .......++.+...... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999996432111111111111000 000 11122334333211000 0
Q ss_pred eecCeEEEEEcCCCCCCcH----HHHHHHHH--------hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 151 YWNKHRINIIDTPGHVDFT----LEVERALR--------VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 151 ~~~~~~i~liDTPG~~~f~----~~~~~~l~--------~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
...++.+.||||||..... .++....+ ..+..++|+|++.|..... ......+.--+.-+|+||+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~--~a~~f~~~~~~~giIlTKlD 270 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS--QAKAFHEAVGLTGIILTKLD 270 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH--HHHHHHhhCCCCEEEEECCC
Confidence 1256889999999976532 23333222 2477899999986543222 12222222224578999999
Q ss_pred cc
Q 008294 219 RL 220 (571)
Q Consensus 219 ~~ 220 (571)
..
T Consensus 271 ~t 272 (318)
T PRK10416 271 GT 272 (318)
T ss_pred CC
Confidence 43
No 361
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.15 E-value=2.1e-05 Score=73.64 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=42.1
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHH------HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERAL------RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l------~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.++.+.++||||...+.......+ ...|.+++|+|+..+.. .....+......+ ..-+|+||+|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~-~~~~~~~~~~~~~-~~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD-AVNQAKAFNEALG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH-HHHHHHHHHhhCC-CCEEEEECCcCCC
Confidence 467799999999864433322222 23799999999965432 2233334444445 3567889999754
No 362
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.14 E-value=6.5e-06 Score=83.21 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=44.5
Q ss_pred CCCCC-cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 163 PGHVD-FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 163 PG~~~-f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
|||.. ...++...+..+|++++|+|+..+.......+.+.+ .+.|+++|+||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 78754 567788899999999999999877666555554444 368999999999985
No 363
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.14 E-value=3.2e-05 Score=77.76 Aligned_cols=131 Identities=13% Similarity=0.108 Sum_probs=68.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCc-ceeeeeecCccccc-chh---hhhhhceeEeeceE-----E--------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTATMD-WME---QEQERGITITSAAT-----T-------- 149 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~-~~~g~~~~g~~~~d-~~~---~e~~~g~t~~~~~~-----~-------- 149 (571)
.+.+.|+++|++|+||||++..|....... .+..-++....... ... --...|+.+..... .
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 346789999999999999999886332111 11111111110000 000 01233333211000 0
Q ss_pred EeecCeEEEEEcCCCCCCcHHHHHH-------HHH-----hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecC
Q 008294 150 TYWNKHRINIIDTPGHVDFTLEVER-------ALR-----VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (571)
Q Consensus 150 ~~~~~~~i~liDTPG~~~f~~~~~~-------~l~-----~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~ 217 (571)
....++.+.||||||.......... ... ..|..++|+|+..+. ..........+.--+.-+|+||+
T Consensus 150 ~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~~~g~IlTKl 227 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQAKVFNEAVGLTGIILTKL 227 (272)
T ss_pred HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHHHHHHhhCCCCEEEEEcc
Confidence 0125689999999997654333221 222 279999999997542 22222222222112457899999
Q ss_pred Ccc
Q 008294 218 DRL 220 (571)
Q Consensus 218 D~~ 220 (571)
|..
T Consensus 228 De~ 230 (272)
T TIGR00064 228 DGT 230 (272)
T ss_pred CCC
Confidence 963
No 364
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.11 E-value=1.6e-05 Score=75.97 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=65.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC---CcceeeeeecCcccccc---hhhhhhhceeEeeceE-------------EEe
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG---RNYKIGEVHEGTATMDW---MEQEQERGITITSAAT-------------TTY 151 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g---~~~~~g~~~~g~~~~d~---~~~e~~~g~t~~~~~~-------------~~~ 151 (571)
+.|+++|++|+||||.+-.|..... ......+.+... .-.. ..--+.-|+.+..... .+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R-~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR-IGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS-THHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC-ccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5789999999999999999974322 111111111110 0000 0001122332211100 001
Q ss_pred ecCeEEEEEcCCCCCCcHHHHH----HHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 152 WNKHRINIIDTPGHVDFTLEVE----RALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~~~~~----~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
.+++.+.||||||......+.. ..+. ..+-+++|+|++.+..... .........++. =++++|+|..
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE-QALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH-HHHHHHHHSSTC-EEEEESTTSS
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH-HHHHHhhcccCc-eEEEEeecCC
Confidence 1457899999999776543322 2222 3478999999987543222 333333334444 5669999964
No 365
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.11 E-value=1.8e-06 Score=78.99 Aligned_cols=65 Identities=23% Similarity=0.307 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+.++++|++|+|||||+|+|+... ....+.+.. ...+.+.+|.......+ .....+|||||..+|
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~--~~~t~~is~--------~~~rGkHTTt~~~l~~l---~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA--KQKTGEISE--------KTGRGKHTTTHRELFPL---PDGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS------S----------------------SEEEEEE---TTSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc--chhhhhhhc--------ccCCCcccCCCeeEEec---CCCcEEEECCCCCcc
Confidence 689999999999999999998321 111121110 01122334444443333 234689999998775
No 366
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.09 E-value=6.4e-06 Score=75.86 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=36.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
..+|+++|.+|+|||||+|+|+ +....... ...|+|.......+ +..+.|+||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~---~~~~~~~~--------------~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLR---SKKVCKVA--------------PIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHh---cCCceeeC--------------CCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 4689999999999999999997 22111111 12355554433322 345899999994
No 367
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.09 E-value=5.1e-05 Score=78.81 Aligned_cols=144 Identities=21% Similarity=0.182 Sum_probs=80.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc-CCcceeeeeecCcccccchhhhh--------hhceeEeeceEEEee-------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT-GRNYKIGEVHEGTATMDWMEQEQ--------ERGITITSAATTTYW------- 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~-g~~~~~g~~~~g~~~~d~~~~e~--------~~g~t~~~~~~~~~~------- 152 (571)
+++...+.|..|+|||||+++|+... |.....-..+.|..-.|..-... +.-+.+..++++|..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 46788999999999999999999643 21111111122322222211111 012333444444432
Q ss_pred --------cCeEEEEEcCCCCCCcHHHHHHH-------HHhcCeEEEEEeCCCCCchh----------------------
Q 008294 153 --------NKHRINIIDTPGHVDFTLEVERA-------LRVLDGAICLFDSVAGVEPQ---------------------- 195 (571)
Q Consensus 153 --------~~~~i~liDTPG~~~f~~~~~~~-------l~~~D~~ilVvda~~g~~~~---------------------- 195 (571)
......+|.|.|..+-...+... .-..|++|.|||+.......
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHET 162 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccc
Confidence 23578999999998854333221 12458999999997542110
Q ss_pred --HHHHHHHHHhcCCCeEEEEecCCccccc-hhhhHHHHHHHh
Q 008294 196 --SETVWRQADKYGVPRICFVNKMDRLGAN-FFRTRDMIVTNL 235 (571)
Q Consensus 196 --~~~~~~~~~~~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l 235 (571)
......++ ...-+|++||+|+...+ ..++.+.+++..
T Consensus 163 ~~~~~~~~Qi---~~AD~IvlnK~Dl~~~~~l~~~~~~l~~~~ 202 (341)
T TIGR02475 163 PLEELFEDQL---ACADLVILNKADLLDAAGLARVRAEIAAEL 202 (341)
T ss_pred hHHHHHHHHH---HhCCEEEEeccccCCHHHHHHHHHHHHHhC
Confidence 00111222 23458999999998754 445555555543
No 368
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.08 E-value=1.7e-05 Score=74.66 Aligned_cols=140 Identities=21% Similarity=0.194 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHH-hc-CCcceeeeeecCcccccchhhhhhhce---eEeeceEEEee-------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF-YT-GRNYKIGEVHEGTATMDWMEQEQERGI---TITSAATTTYW------------- 152 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~-~~-g~~~~~g~~~~g~~~~d~~~~e~~~g~---t~~~~~~~~~~------------- 152 (571)
|.+.+.|..|+|||||+++|+. .. +.....-..+.|..-.|.... .+.|+ .+......+..
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l-~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~ 79 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELL-QEDGVPVVELNNGCICCTLRDDLVEALRRLLR 79 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHH-HTTT-EEEEECTTTESS-TTS-HHHHHHHHCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhh-cccceEEEEecCCCcccccHHHHHHHHHHHHH
Confidence 4678999999999999999993 22 221111111223222222111 12232 33333333321
Q ss_pred -c--CeEEEEEcCCCCCCcHHH-----HHHHHHhcCeEEEEEeCCCCCch-hHHHHHHHHHhcCCCeEEEEecCCccccc
Q 008294 153 -N--KHRINIIDTPGHVDFTLE-----VERALRVLDGAICLFDSVAGVEP-QSETVWRQADKYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 153 -~--~~~i~liDTPG~~~f~~~-----~~~~l~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (571)
. .....||.|.|..+-... .....-..+.+|.|||+..-... ..... ...+...--++++||+|+...+
T Consensus 80 ~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~--~~~Qi~~ADvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 80 EYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPEL--LREQIAFADVIVLNKIDLVSDE 157 (178)
T ss_dssp CCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHH--HHHHHCT-SEEEEE-GGGHHHH
T ss_pred hcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhh--hhhcchhcCEEEEeccccCChh
Confidence 2 468899999997764333 12223345899999999653111 11111 1222234459999999998765
Q ss_pred h--hhhHHHHHH
Q 008294 224 F--FRTRDMIVT 233 (571)
Q Consensus 224 ~--~~~~~~i~~ 233 (571)
. .++.+.+++
T Consensus 158 ~~i~~~~~~ir~ 169 (178)
T PF02492_consen 158 QKIERVREMIRE 169 (178)
T ss_dssp --HHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 2 344444444
No 369
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.08 E-value=6.5e-05 Score=70.67 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=54.6
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
..+.+.++||||... .....++..+|.+++|+.+...-.......++.++..++|..+|+||+|....
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~ 158 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDE 158 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcc
Confidence 578999999997643 35667889999999999987654556667778888889999999999997543
No 370
>PRK10867 signal recognition particle protein; Provisional
Probab=98.08 E-value=0.00026 Score=75.49 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=71.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc----CCcceeeeeecCcc-cccch-hhhhhhceeEeeceEE-------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTA-TMDWM-EQEQERGITITSAATT------------- 149 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~----g~~~~~g~~~~g~~-~~d~~-~~e~~~g~t~~~~~~~------------- 149 (571)
....|.++|..|+||||++..|.... |........+.... ..+.. ..-...|+.+......
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 35788999999999999888876321 32222111111110 00000 0012223332211000
Q ss_pred EeecCeEEEEEcCCCCCCcHHHHH----HH--HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCcccc
Q 008294 150 TYWNKHRINIIDTPGHVDFTLEVE----RA--LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGA 222 (571)
Q Consensus 150 ~~~~~~~i~liDTPG~~~f~~~~~----~~--l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~ 222 (571)
....++.+.||||||......... .. ....|.+++|+|+..| ............ .++ .-+|+||+|-..
T Consensus 179 a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~~- 254 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGDA- 254 (433)
T ss_pred HHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCcc-
Confidence 011457899999999654322222 11 2245788999998653 222222222222 233 357889999532
Q ss_pred chhhhHHHHHHHhCC
Q 008294 223 NFFRTRDMIVTNLGA 237 (571)
Q Consensus 223 ~~~~~~~~i~~~l~~ 237 (571)
....+-.+...++.
T Consensus 255 -rgG~alsi~~~~~~ 268 (433)
T PRK10867 255 -RGGAALSIRAVTGK 268 (433)
T ss_pred -cccHHHHHHHHHCc
Confidence 12235555566664
No 371
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=3.1e-05 Score=83.83 Aligned_cols=134 Identities=16% Similarity=0.212 Sum_probs=79.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeee-------e--ecCcc-c--ccc---hhhhhhhc---e-------e
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-------V--HEGTA-T--MDW---MEQEQERG---I-------T 142 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~-------~--~~g~~-~--~d~---~~~e~~~g---~-------t 142 (571)
.+.-+|+|.|.+++||||++|++++..-....+|. + .+|.. + .+- .......+ . .
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 34568999999999999999999965321111110 0 01110 0 000 00000000 0 1
Q ss_pred EeeceEEEeecC-------eEEEEEcCCCCCC---cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-E
Q 008294 143 ITSAATTTYWNK-------HRINIIDTPGHVD---FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-I 211 (571)
Q Consensus 143 ~~~~~~~~~~~~-------~~i~liDTPG~~~---f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-i 211 (571)
-..+...+.|.. ..+.++|.||..- +...+......+|++|+|+.|..-.+......+..+.+. +|. +
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniF 265 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIF 265 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEE
Confidence 112233344432 2689999999753 455566777889999999999876666666666666655 554 5
Q ss_pred EEEecCCcccc
Q 008294 212 CFVNKMDRLGA 222 (571)
Q Consensus 212 vviNK~D~~~~ 222 (571)
|+.||.|....
T Consensus 266 IlnnkwDasas 276 (749)
T KOG0448|consen 266 ILNNKWDASAS 276 (749)
T ss_pred EEechhhhhcc
Confidence 66788897544
No 372
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.06 E-value=1.3e-05 Score=73.69 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=33.3
Q ss_pred CeEEEEEeCCCCCchhHHHHH-HHHHhcCCCeEEEEecCCccc
Q 008294 180 DGAICLFDSVAGVEPQSETVW-RQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~-~~~~~~~~p~ivviNK~D~~~ 221 (571)
|.+++|+|+.++.......+. ..+...++|+++|+||+|+..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~ 43 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVP 43 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCC
Confidence 789999999887666555444 456677899999999999853
No 373
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.05 E-value=0.0003 Score=75.13 Aligned_cols=128 Identities=20% Similarity=0.289 Sum_probs=68.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCc-ceeeeeecCc--c-cccchh-hhhhhceeEeeceEEE-----------e
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGT--A-TMDWME-QEQERGITITSAATTT-----------Y 151 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~-~~~g~~~~g~--~-~~d~~~-~e~~~g~t~~~~~~~~-----------~ 151 (571)
.....|+++|.+|+||||++..|....... .+..-+.... . ..+... .-...|+.+......- .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 346789999999999999999886332111 1111111111 0 000000 0112233222111000 0
Q ss_pred ecCeEEEEEcCCCCCCcHHHH------HHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCCe-EEEEecCCcc
Q 008294 152 WNKHRINIIDTPGHVDFTLEV------ERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPR-ICFVNKMDRL 220 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~~~~------~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~-ivviNK~D~~ 220 (571)
...+.+.||||||........ ...+..+|.+++|+|+..|. +....+..+ .+++ -+|+||+|-.
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq-----~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ-----QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH-----HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 134589999999976653332 23345679999999998762 222333333 2343 5789999953
No 374
>PRK14974 cell division protein FtsY; Provisional
Probab=98.04 E-value=3.5e-05 Score=79.46 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=66.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCc-ceeeeeecCccc----ccc-hhhhhhhceeEeeceE-----E--------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTAT----MDW-MEQEQERGITITSAAT-----T-------- 149 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~-~~~g~~~~g~~~----~d~-~~~e~~~g~t~~~~~~-----~-------- 149 (571)
+.+.|+++|.+|+||||++..|....... .+.+-+ .+.++ .+. ...-..-|+.+..... .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li-~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIA-AGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEe-cCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 45789999999999999888886432111 011111 11110 000 0011122322211100 0
Q ss_pred EeecCeEEEEEcCCCCCCcHHHHHHH----HH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 150 TYWNKHRINIIDTPGHVDFTLEVERA----LR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 150 ~~~~~~~i~liDTPG~~~f~~~~~~~----l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
....++.+.||||+|........... .+ ..|..++|+|+..|- ...+........--.--+++||+|..
T Consensus 218 ~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 218 AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 01145779999999976533332222 22 358999999997653 22222222222212357889999974
No 375
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.03 E-value=2.8e-05 Score=82.84 Aligned_cols=115 Identities=18% Similarity=0.081 Sum_probs=73.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
-.+|+++|..|+|||||+-+|+........+-.. .-+++- ....-......++||+-..+-.
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl---------------~~i~IP---advtPe~vpt~ivD~ss~~~~~ 70 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL---------------PRILIP---ADVTPENVPTSIVDTSSDSDDR 70 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccccccccC---------------CccccC---CccCcCcCceEEEecccccchh
Confidence 4578899999999999999998544322111110 112222 1112234458899999777666
Q ss_pred HHHHHHHHhcCeEEEEEeCCCC-----CchhHHHHHHHHH--hcCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAG-----VEPQSETVWRQAD--KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g-----~~~~~~~~~~~~~--~~~~p~ivviNK~D~~~~ 222 (571)
......++.||++++|.+..+. ++.-..-+++..- -.++|+|+|.||+|....
T Consensus 71 ~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 71 LCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred HHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 6678889999999999977652 2222222222222 146899999999998653
No 376
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.01 E-value=9.8e-06 Score=75.78 Aligned_cols=58 Identities=16% Similarity=0.306 Sum_probs=39.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
....+++++|.+|+|||||+|+|+ +..... .....|+|.......+ +..+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~---~~~~~~--------------~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLK---RSRACN--------------VGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHh---Ccccce--------------ecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 334689999999999999999997 211111 1123567776554433 246899999994
No 377
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.00 E-value=4.4e-05 Score=74.64 Aligned_cols=91 Identities=14% Similarity=0.081 Sum_probs=54.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.++..|+|+|+.++|||||+|+|+.... .-..+. .. ....+|+-+....... ..+..+.++||||..+
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~-~f~~~~-----~~-----~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~ 72 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLS-GFDVMD-----TS-----QQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDG 72 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCC-CeEecC-----CC-----CCCccceEEEeccccC-CCcceEEEEecCCcCc
Confidence 4578999999999999999999973210 111111 00 1112333322221111 1457899999999865
Q ss_pred c------HHHHHHHHHh--cCeEEEEEeCCC
Q 008294 168 F------TLEVERALRV--LDGAICLFDSVA 190 (571)
Q Consensus 168 f------~~~~~~~l~~--~D~~ilVvda~~ 190 (571)
. ......++.. +|.+|+.++...
T Consensus 73 ~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 73 RERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 3 2223455555 899998888753
No 378
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.00 E-value=7.4e-06 Score=85.87 Aligned_cols=131 Identities=10% Similarity=0.144 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
++++++|.+|+|||||+|+|+.......... + ....+|+|.......+ +..+.++||||.....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~------~------~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~~- 218 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVI------T------TSPFPGTTLDLIEIPL---DDGHSLYDTPGIINSH- 218 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCccee------e------ecCCCCeEeeEEEEEe---CCCCEEEECCCCCChh-
Confidence 6899999999999999999985432111100 0 1122567776554433 2346899999986531
Q ss_pred HHHHHH-----------HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc-chhhhHHHHHHHhCC
Q 008294 171 EVERAL-----------RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTRDMIVTNLGA 237 (571)
Q Consensus 171 ~~~~~l-----------~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~-~~~~~~~~i~~~l~~ 237 (571)
++...+ .......+.+|....+.......+..+......+.++++|.+.... +.++..+-+++.+|.
T Consensus 219 ~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g~ 297 (360)
T TIGR03597 219 QMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKHLGN 297 (360)
T ss_pred HhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhhcCC
Confidence 111111 1235566667665432222211112222234455667777776543 444445555555554
No 379
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.00 E-value=3.9e-05 Score=71.80 Aligned_cols=69 Identities=23% Similarity=0.335 Sum_probs=47.2
Q ss_pred CeEEEEEcCCCCCCc------HHHHHHHHHhcC---eEEEEEeCCCCCch-----hHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 154 KHRINIIDTPGHVDF------TLEVERALRVLD---GAICLFDSVAGVEP-----QSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 154 ~~~i~liDTPG~~~f------~~~~~~~l~~~D---~~ilVvda~~g~~~-----~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
+-.+.++|+||+.+. .....+.+.+.+ ++++++|+.--+.. .....+..+....+|.|=|++|||+
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDL 176 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHH
Confidence 346889999998763 566666776643 47788887642221 2223344555678999999999998
Q ss_pred ccc
Q 008294 220 LGA 222 (571)
Q Consensus 220 ~~~ 222 (571)
...
T Consensus 177 lk~ 179 (273)
T KOG1534|consen 177 LKD 179 (273)
T ss_pred hhh
Confidence 754
No 380
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=5.2e-05 Score=78.69 Aligned_cols=131 Identities=14% Similarity=0.122 Sum_probs=66.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcC-CcceeeeeecCcccccchhhhh----hhceeEeeceEE---------Ee-ec
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTG-RNYKIGEVHEGTATMDWMEQEQ----ERGITITSAATT---------TY-WN 153 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g-~~~~~g~~~~g~~~~d~~~~e~----~~g~t~~~~~~~---------~~-~~ 153 (571)
+.+.|+++|+.|+||||++..|..... .-.+.+-+...+.......+-+ .-|+.+...... +. ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 357899999999999999999963321 1111221111110000000000 112222111000 00 02
Q ss_pred CeEEEEEcCCCCCCc----HHHHHHHHHh--cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 154 KHRINIIDTPGHVDF----TLEVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 154 ~~~i~liDTPG~~~f----~~~~~~~l~~--~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
++.+.||||||.... ..++...+.. .|.++||+|++.+.. .....++.....+ .-=++++|+|-..
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~~~~-idglI~TKLDET~ 391 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIH-IDGIVFTKFDETA 391 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhcCCC-CCEEEEEcccCCC
Confidence 468999999997553 3333333332 377899999864321 1233333333322 2357899999643
No 381
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.96 E-value=7.6e-06 Score=77.86 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcce-eeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~-~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
.+++++|.+|+|||||+|+|+.......+ .+. ......+|+|.......+. ..+.||||||.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~----------~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDL----------LTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccc----------cccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 58999999999999999999843211100 000 0111234778877666553 25899999995
No 382
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.94 E-value=1.3e-05 Score=73.63 Aligned_cols=58 Identities=21% Similarity=0.348 Sum_probs=39.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
....+++++|.+|+|||||+|+|+...... ....+|+|.......+ +..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~-----------------~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK-----------------VGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc-----------------ccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 346789999999999999999997321111 1112355655554433 256999999994
No 383
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.94 E-value=2e-05 Score=80.12 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=44.5
Q ss_pred CCCCCC-cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 162 TPGHVD-FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 162 TPG~~~-f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
-|||.. -..++...+..+|++++|+|+..+.......+...+. +.|+++|+||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC
Confidence 478754 4667888999999999999998877665554444432 78999999999985
No 384
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=8.9e-05 Score=79.84 Aligned_cols=131 Identities=20% Similarity=0.175 Sum_probs=65.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCcccccchhhhh----hhceeEeeceEE------E-eec
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTATMDWMEQEQ----ERGITITSAATT------T-YWN 153 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~~~~d~~~~e~----~~g~t~~~~~~~------~-~~~ 153 (571)
+....|+|+|..|+||||++..|.... +...+..-+............-. ..|+.+...... + ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 345799999999999999999987421 10011111111010000011111 112222111000 0 114
Q ss_pred CeEEEEEcCCCCCCcHHHHHH---HHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 154 KHRINIIDTPGHVDFTLEVER---ALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~---~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
++.+.||||||.......... .+. .....++|+++..+..... +.++..... .+.-+|+||+|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~-eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD-EVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH-HHHHHHHhh-CCeEEEEecCcCc
Confidence 688999999997543222111 111 1245678888876433322 333333333 4667999999974
No 385
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.90 E-value=0.00011 Score=70.35 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=47.3
Q ss_pred CeEEEEEcC-CCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcC-CCeEEEEecCCcc
Q 008294 154 KHRINIIDT-PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG-VPRICFVNKMDRL 220 (571)
Q Consensus 154 ~~~i~liDT-PG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~-~p~ivviNK~D~~ 220 (571)
.+.+.++|| +|.+.|... ..+.+|.+|+|+|++..--...+++-+...+.+ .++.+|+||+|-.
T Consensus 133 ~~e~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCcEEEEecccchhhhccc---cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 366888888 455555432 345789999999998655556667777788888 7888999999954
No 386
>PRK12288 GTPase RsgA; Reviewed
Probab=97.89 E-value=1.7e-05 Score=82.40 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=39.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
.++|+|.+|+|||||+|+|+... ....|.+.. ...+.+.+|.....+.+..+ ..||||||...|
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~--~~~t~~is~--------~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA--EILVGDVSD--------NSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc--ceeeccccC--------cCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 58999999999999999997221 122222210 01122345555554444323 359999998875
No 387
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.89 E-value=0.0012 Score=70.48 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=71.5
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh----cCCcceeeeeecCcc-cccch-hhhhhhceeEeeceE-----E--------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY----TGRNYKIGEVHEGTA-TMDWM-EQEQERGITITSAAT-----T-------- 149 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~----~g~~~~~g~~~~g~~-~~d~~-~~e~~~g~t~~~~~~-----~-------- 149 (571)
+...+.++|++|+||||++-.|... .|........+.... ..+.. ..-...|+.+..... .
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 3568899999999999998888643 222111111111100 00000 001122222211100 0
Q ss_pred EeecCeEEEEEcCCCCCCcHHHHHHH------HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCcccc
Q 008294 150 TYWNKHRINIIDTPGHVDFTLEVERA------LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGA 222 (571)
Q Consensus 150 ~~~~~~~i~liDTPG~~~f~~~~~~~------l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~ 222 (571)
....++.+.||||||........... ....|.+++|+|+..+ ............ .++ .=+|+||+|-..
T Consensus 178 ~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~-~v~i~giIlTKlD~~~- 253 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNE-RLGLTGVVLTKLDGDA- 253 (428)
T ss_pred HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHh-hCCCCEEEEeCccCcc-
Confidence 01145789999999965432222221 2236889999999754 222222222221 223 347799999432
Q ss_pred chhhhHHHHHHHhCC
Q 008294 223 NFFRTRDMIVTNLGA 237 (571)
Q Consensus 223 ~~~~~~~~i~~~l~~ 237 (571)
....+..+...++.
T Consensus 254 -~~G~~lsi~~~~~~ 267 (428)
T TIGR00959 254 -RGGAALSVRSVTGK 267 (428)
T ss_pred -cccHHHHHHHHHCc
Confidence 12235556666664
No 388
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.89 E-value=0.00025 Score=66.38 Aligned_cols=81 Identities=16% Similarity=0.097 Sum_probs=59.3
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHHHHHH
Q 008294 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTN 234 (571)
Q Consensus 156 ~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~ 234 (571)
.+.+|||||..+. ....++..+|.+|+|+++...-.......++.+...+.+ ..+|+|++|.......+.++.+++.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~~~~~ 141 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEEI 141 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHHHHHHH
Confidence 7999999986553 466788999999999998765555555666666666655 4588999987554444556777777
Q ss_pred hCCc
Q 008294 235 LGAK 238 (571)
Q Consensus 235 l~~~ 238 (571)
++..
T Consensus 142 ~~~~ 145 (179)
T cd02036 142 LGVP 145 (179)
T ss_pred hCCC
Confidence 7754
No 389
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.88 E-value=8.5e-05 Score=75.08 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=38.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
...+++++|.+|+|||||+|+|..... ...+ ...|+|.......+ +..+.|+||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~--~~~~---------------~~~g~T~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKV--AKVG---------------NRPGVTKGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc--cccC---------------CCCCeecceEEEEe---CCCEEEEECCCc
Confidence 457899999999999999999962110 1111 12455665544333 236899999998
No 390
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=4.4e-05 Score=78.06 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe------------------e
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY------------------W 152 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~------------------~ 152 (571)
.+++|||.||+|||||+|++..... .... ++.+ ||........ +
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a---~~aN-YPF~--------------TIePN~Giv~v~d~rl~~L~~~~~c~~k~ 64 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGA---EIAN-YPFC--------------TIEPNVGVVYVPDCRLDELAEIVKCPPKI 64 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCc---cccC-CCcc--------------cccCCeeEEecCchHHHHHHHhcCCCCcE
Confidence 5799999999999999999963321 1111 1111 1111111111 1
Q ss_pred cCeEEEEEcCCCCCC-------cHHHHHHHHHhcCeEEEEEeCCC
Q 008294 153 NKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 153 ~~~~i~liDTPG~~~-------f~~~~~~~l~~~D~~ilVvda~~ 190 (571)
....+.|+|.+|... ........+|.+|+++.|||+.+
T Consensus 65 ~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 65 RPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred EeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 235689999999865 46668889999999999999983
No 391
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.85 E-value=2.6e-05 Score=70.38 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
..++++|.+|+|||||+|+|+.. .....+. ..|.|.......+ + ..+.||||||..
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~---~~~~~~~--------------~~~~~~~~~~~~~--~-~~~~i~DtpG~~ 139 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGK---KKVSVSA--------------TPGKTKHFQTIFL--T-PTITLCDCPGLV 139 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC---CceeeCC--------------CCCcccceEEEEe--C-CCEEEEECCCcC
Confidence 37999999999999999999722 1111111 1233444333333 2 268999999963
No 392
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.85 E-value=9.8e-05 Score=61.53 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=63.5
Q ss_pred EEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCc-cccce
Q 008294 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGET 469 (571)
Q Consensus 391 ~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~Gdt 469 (571)
.+.|.....+++.|.++.+-|.+|+|+.||.+....... ||+.|+...| .++++|.||+.|-|.|++++ .+||.
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~g--kVr~l~d~~g---~~v~~a~Ps~~V~I~G~~~~P~aGd~ 76 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTYG--KVRAMFDENG---KRVKEAGPSTPVEILGLKGVPQAGDK 76 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEccccc--EEEEEECCCC---CCCCEECCCCcEEEcCCCCCCCCCCE
Confidence 467888889999999999999999999999998765332 6777766665 77999999999999999886 56877
Q ss_pred ec
Q 008294 470 LC 471 (571)
Q Consensus 470 l~ 471 (571)
+.
T Consensus 77 ~~ 78 (95)
T cd03702 77 FL 78 (95)
T ss_pred EE
Confidence 64
No 393
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.83 E-value=5.8e-05 Score=76.74 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=40.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+++++|.+|+|||||+|+|.... ....+ ...|+|.......+ +..+.|+||||...
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~--~~~~~---------------~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 178 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKK--IAKTG---------------NRPGVTKAQQWIKL---GKGLELLDTPGILW 178 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCC--ccccC---------------CCCCeEEEEEEEEe---CCcEEEEECCCcCC
Confidence 345689999999999999999997211 01111 12466776654333 34689999999753
No 394
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=97.83 E-value=0.00011 Score=62.05 Aligned_cols=81 Identities=16% Similarity=0.182 Sum_probs=58.5
Q ss_pred CCCCeEEEEEEEeecC--------CCceEEEEEEecceeCCCCEEEeCCC-------Cc-----eeecceEEEeccCcee
Q 008294 386 DDEPFAGLAFKIMSDP--------FVGSLTFVRVYAGTLSAGSYVLNANK-------GK-----KERIGRLLEMHANSRE 445 (571)
Q Consensus 386 ~~~p~~~~V~k~~~d~--------~~G~i~~~rV~sG~l~~gd~v~~~~~-------~~-----~~~i~~i~~~~g~~~~ 445 (571)
.+.|+.|+|.++|... ..|.++-|+|.+|.|+.||.|-..+. +. ..+|.+|+.. ..
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~----~~ 77 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAE----NN 77 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEec----Cc
Confidence 3678899999998655 77899999999999999999964421 11 2334444433 37
Q ss_pred ecCeecCCCEEEE-eCCCC-cccccee
Q 008294 446 DVKVALAGDIIAL-AGLKD-TITGETL 470 (571)
Q Consensus 446 ~v~~a~aGdiv~i-~gl~~-~~~Gdtl 470 (571)
.+++|.||+.++| ++|+. +.++|.|
T Consensus 78 ~l~~a~pGgliGvgT~Ldpsltk~D~l 104 (113)
T cd03688 78 DLQEAVPGGLIGVGTKLDPTLTKADRL 104 (113)
T ss_pred cccEEeCCCeEEEccccCcccccccee
Confidence 8999999999999 66664 3334444
No 395
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.82 E-value=1.7e-05 Score=79.23 Aligned_cols=65 Identities=26% Similarity=0.253 Sum_probs=40.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+++|++|+|||||+|+|... ...+.+.+.. ...+.+.+|.......+..++ .||||||...|
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~--~~~~t~eIS~--------~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPE--LNQKTGEISE--------KLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCch--hhhhhhhhcc--------cCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 47889999999999999999721 1112222110 011234456666655554344 69999998775
No 396
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00021 Score=74.09 Aligned_cols=129 Identities=19% Similarity=0.162 Sum_probs=63.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCC-cceeeeeecCcc----cccchhhhhhhceeEeeceE--EE-------e-e
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGTA----TMDWMEQEQERGITITSAAT--TT-------Y-W 152 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~-~~~~g~~~~g~~----~~d~~~~e~~~g~t~~~~~~--~~-------~-~ 152 (571)
.+.+.++++|+.|+||||++..|...... ..+.+-+...+. ...+...-..-|+.+....- .+ . .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 34678999999999999999999743211 111221211110 00111011111221111000 00 0 0
Q ss_pred cCeEEEEEcCCCCCCcHHH----HHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhc-CC-CeEEEEecCCcc
Q 008294 153 NKHRINIIDTPGHVDFTLE----VERALR--VLDGAICLFDSVAGVEPQSETVWRQADKY-GV-PRICFVNKMDRL 220 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~----~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~-p~ivviNK~D~~ 220 (571)
.++.+.||||||......+ +..... ..|.+++|+++.. ..+. ....+..+ .+ +--++++|+|-.
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d--~~~i~~~f~~l~i~glI~TKLDET 355 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSAD--VMTILPKLAEIPIDGFIITKMDET 355 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHH--HHHHHHhcCcCCCCEEEEEcccCC
Confidence 3579999999998544333 222222 2266678887732 3222 22233222 22 235789999964
No 397
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.78 E-value=0.00021 Score=70.34 Aligned_cols=153 Identities=16% Similarity=0.087 Sum_probs=83.2
Q ss_pred ccCCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeee-eecCc--ccccchhhhhhhc------eeEeeceEEEee-
Q 008294 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-VHEGT--ATMDWMEQEQERG------ITITSAATTTYW- 152 (571)
Q Consensus 83 ~~~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~-~~~g~--~~~d~~~~e~~~g------~t~~~~~~~~~~- 152 (571)
...+..+++.-.|.|..|+|||||+|.++...+..+...- .+.|. ..-...-.+++.| +....++.+|..
T Consensus 50 ~~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk 129 (391)
T KOG2743|consen 50 KSSLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVK 129 (391)
T ss_pred ccCCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEec
Confidence 3456678899999999999999999999844332221110 01111 0000000011111 234455566654
Q ss_pred --------------cCeEEEEEcCCCCCCcHHHHHH--------HHHhcCeEEEEEeCCCCCchhHH----HHHHHH-Hh
Q 008294 153 --------------NKHRINIIDTPGHVDFTLEVER--------ALRVLDGAICLFDSVAGVEPQSE----TVWRQA-DK 205 (571)
Q Consensus 153 --------------~~~~i~liDTPG~~~f~~~~~~--------~l~~~D~~ilVvda~~g~~~~~~----~~~~~~-~~ 205 (571)
+.+...++.|-|.++=...... .--..|++|-|||+.+.....++ -+|..+ .+
T Consensus 130 ~~gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Q 209 (391)
T KOG2743|consen 130 DNGVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQ 209 (391)
T ss_pred chHHHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHH
Confidence 3467899999999884332222 22235999999999864322211 112111 11
Q ss_pred cCCCeEEEEecCCccccc-hhhhHHHHHHHh
Q 008294 206 YGVPRICFVNKMDRLGAN-FFRTRDMIVTNL 235 (571)
Q Consensus 206 ~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l 235 (571)
-...--+++||.|+.... ...+.+.|+...
T Consensus 210 iA~AD~II~NKtDli~~e~~~~l~q~I~~IN 240 (391)
T KOG2743|consen 210 IALADRIIMNKTDLVSEEEVKKLRQRIRSIN 240 (391)
T ss_pred HhhhheeeeccccccCHHHHHHHHHHHHHhh
Confidence 112225789999997743 444555555433
No 398
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.77 E-value=9.5e-05 Score=76.70 Aligned_cols=82 Identities=17% Similarity=0.079 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcc-eeeeeecCcccccchhhhhhhceeEeeceEEEee-----------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNY-KIGEVHEGTATMDWMEQEQERGITITSAATTTYW----------------- 152 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~-~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~----------------- 152 (571)
.+++|||.+|+|||||+|+|. +... ..... +.+ |+......+..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT---~~~~~~~a~y-pft--------------Ti~p~~g~v~v~d~r~d~L~~~~~~~~~ 64 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATT---NLLGNEAANP-PFT--------------TIEPNAGVVNPSDPRLDLLAIYIKPEKV 64 (368)
T ss_pred ceEEEECCCCCChHHHHHHHh---CCCccccCCC-CCC--------------CCCCceeEEEechhHHHHHHHHhCCcCc
Confidence 578999999999999999995 3222 11111 111 12222211111
Q ss_pred cCeEEEEEcCCCCCC-------cHHHHHHHHHhcCeEEEEEeCCC
Q 008294 153 NKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 153 ~~~~i~liDTPG~~~-------f~~~~~~~l~~~D~~ilVvda~~ 190 (571)
....+.++|.||... ........++.+|++++|||+.+
T Consensus 65 ~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 65 PPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred CCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 234689999999765 44568889999999999999863
No 399
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.77 E-value=3.7e-05 Score=76.21 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=39.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
..++++|++|+|||||+|+|+.... .+.+.+.. ...+.+++|.......+ .+ -.||||||...|
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~--~~t~~i~~--------~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK--QQVNDISS--------KLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh--ccccceec--------cCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 4789999999999999999983211 11122110 00112345666555555 22 379999998764
No 400
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.75 E-value=4.8e-05 Score=71.07 Aligned_cols=58 Identities=19% Similarity=0.106 Sum_probs=38.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
....+++++|.+|+|||||+|+|+.... .... ...|+|.......+. ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~---~~~~--------------~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKV---AKVG--------------NKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCc---eeec--------------CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3457899999999999999999972211 0111 112456555544442 56899999996
No 401
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.71 E-value=0.003 Score=65.94 Aligned_cols=212 Identities=16% Similarity=0.146 Sum_probs=101.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcC-CcceeeeeecCccc---ccc-hhhhhhhceeEeeceE-------------E
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG-RNYKIGEVHEGTAT---MDW-MEQEQERGITITSAAT-------------T 149 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g-~~~~~g~~~~g~~~---~d~-~~~e~~~g~t~~~~~~-------------~ 149 (571)
+..-.|.++|--|+||||.+..|.+... ...+.+-+...+.. .+. ...-.+.|+.+..... .
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 3456789999999999999998863321 11111111111000 000 0011112222111100 0
Q ss_pred EeecCeEEEEEcCCCCCCcHHHHHHH------HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCcccc
Q 008294 150 TYWNKHRINIIDTPGHVDFTLEVERA------LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGA 222 (571)
Q Consensus 150 ~~~~~~~i~liDTPG~~~f~~~~~~~------l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~ 222 (571)
+....+.+.|+||+|-.....++..- .-..|=+++|+||.-|...... ...-...+++ =+|++|+|-..
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~---A~aF~e~l~itGvIlTKlDGda- 253 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNT---AKAFNEALGITGVILTKLDGDA- 253 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHH---HHHHhhhcCCceEEEEcccCCC-
Confidence 01145789999999965543333332 2334889999999876443221 1111223444 47899999432
Q ss_pred chhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecc-cHHHHHHHHH--HHHHHHHHH
Q 008294 223 NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDI-PANLQKMAQE--YRSQMIETI 299 (571)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~--~~~~l~e~~ 299 (571)
.--..-+++...|.++. . ++.+++..+ +++| |+.+.++.-. ....|+|.+
T Consensus 254 -RGGaALS~~~~tg~PIk---F-iGtGEki~d----------------------LE~F~P~R~asRILGMGDv~sLvEk~ 306 (451)
T COG0541 254 -RGGAALSARAITGKPIK---F-IGTGEKIDD----------------------LEPFHPDRFASRILGMGDVLSLIEKA 306 (451)
T ss_pred -cchHHHhhHHHHCCCeE---E-EecCCCccc----------------------CCCcChHHHHHHhcCcccHHHHHHHH
Confidence 11223344555554221 0 122222211 1122 2222222111 123455555
Q ss_pred hhc-----CHHHHHHHhcCCCCCHHHHHHHHHhhccc
Q 008294 300 VEL-----DDEAMESYLEGNEPDEETIKKLIRKGTIA 331 (571)
Q Consensus 300 ~~~-----~~~l~e~~l~~~~~~~~~l~~~l~~~~~~ 331 (571)
.+. .+++.++...|. ++-+++.+.+++.-..
T Consensus 307 ~~~~d~e~a~~~~~kl~~g~-FtL~Df~~Ql~~m~km 342 (451)
T COG0541 307 EEVVDEEEAEKLAEKLKKGK-FTLEDFLEQLEQMKKM 342 (451)
T ss_pred HHhhhHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHcc
Confidence 443 245666777766 8888888877765433
No 402
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00031 Score=74.46 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=65.6
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc--C-CcceeeeeecCcccccchhhh----hhhceeEeeceEE-------EeecC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT--G-RNYKIGEVHEGTATMDWMEQE----QERGITITSAATT-------TYWNK 154 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~--g-~~~~~g~~~~g~~~~d~~~~e----~~~g~t~~~~~~~-------~~~~~ 154 (571)
....|+++|+.|+||||++..|.... . .....+-+...+......+.. ...|+........ ....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 45689999999999999999886431 1 011112211111111111111 1223322211110 11256
Q ss_pred eEEEEEcCCCCCCcHHHHHH---HHHh---cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 155 HRINIIDTPGHVDFTLEVER---ALRV---LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~---~l~~---~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
+.+.+|||+|.......... .+.. .+-.+||+|++.+... ..+........+ .-=++++|+|-.
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~-~~~~~~~f~~~~-~~~~I~TKlDEt 339 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDT-LDEVISAYQGHG-IHGCIITKVDEA 339 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHH-HHHHHHHhcCCC-CCEEEEEeeeCC
Confidence 78999999997654333222 2322 2457899999753221 122222222222 234789999964
No 403
>PRK12289 GTPase RsgA; Reviewed
Probab=97.70 E-value=0.00017 Score=75.06 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=35.1
Q ss_pred HHHhcCeEEEEEeCCCCC-ch-hHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 175 ALRVLDGAICLFDSVAGV-EP-QSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 175 ~l~~~D~~ilVvda~~g~-~~-~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
++..+|.+++|+|+.+.. .. .....+..+...++|+++|+||+|+..
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~ 134 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVS 134 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCC
Confidence 578899999999997543 33 223444555667999999999999863
No 404
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.68 E-value=0.00015 Score=65.37 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~ivviNK~D~~~ 221 (571)
+++..++..+|++++|+|+.++...+...+.+.+... ++|+++|+||+|+..
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLT 56 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCC
Confidence 5678899999999999999988877777777777665 899999999999864
No 405
>PRK12289 GTPase RsgA; Reviewed
Probab=97.68 E-value=4.7e-05 Score=79.15 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=37.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
.++|+|.+|+|||||+|+|+.... ...+.+.. ...+.+.+|.......+..+ ..||||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~--~~t~~vs~--------~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE--LRVGKVSG--------KLGRGRHTTRHVELFELPNG---GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc--cccccccC--------CCCCCCCcCceeEEEECCCC---cEEEeCCCcccc
Confidence 589999999999999999972211 11121110 01122335555544433222 279999998664
No 406
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.68 E-value=0.00042 Score=66.12 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=74.0
Q ss_pred EEEEcCCCCchHHHHHHHH---HhcCCcceeeeeecCcccccchh------------hhhhhceeEeec--------eEE
Q 008294 93 IGIMAHIDAGKTTTTERVL---FYTGRNYKIGEVHEGTATMDWME------------QEQERGITITSA--------ATT 149 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll---~~~g~~~~~g~~~~g~~~~d~~~------------~e~~~g~t~~~~--------~~~ 149 (571)
-+|||++|+||||.++.+. ...|........++++..+.|.. ...+.|.--+.+ ...
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~ 84 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEAN 84 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhh
Confidence 4699999999999998664 33454444455566554333211 111222111111 011
Q ss_pred Eee-------cCeEEEEEcCCCCCCc------HHHHHHHHHhcCeEE---EEEeCCCCCch-----hHHHHHHHHHhcCC
Q 008294 150 TYW-------NKHRINIIDTPGHVDF------TLEVERALRVLDGAI---CLFDSVAGVEP-----QSETVWRQADKYGV 208 (571)
Q Consensus 150 ~~~-------~~~~i~liDTPG~~~f------~~~~~~~l~~~D~~i---lVvda~~g~~~-----~~~~~~~~~~~~~~ 208 (571)
++| ....+.++|+||+.++ ...+.+.++..|.-+ -++|+.---.+ .....+..+..+..
T Consensus 85 idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~mel 164 (290)
T KOG1533|consen 85 IDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMEL 164 (290)
T ss_pred hHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcc
Confidence 122 2467899999998764 455667777777644 44555421111 11223344556789
Q ss_pred CeEEEEecCCccc
Q 008294 209 PRICFVNKMDRLG 221 (571)
Q Consensus 209 p~ivviNK~D~~~ 221 (571)
|++=|+.|+|+..
T Consensus 165 phVNvlSK~Dl~~ 177 (290)
T KOG1533|consen 165 PHVNVLSKADLLK 177 (290)
T ss_pred cchhhhhHhHHHH
Confidence 9999999999864
No 407
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.64 E-value=8.2e-05 Score=71.71 Aligned_cols=86 Identities=16% Similarity=0.268 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc--
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f-- 168 (571)
-+++++|.+.+|||||+..|. |......+. -+.|.........+++.++.+.|.||..+-
T Consensus 60 a~vg~vgFPSvGksTl~~~l~---g~~s~vasy---------------efttl~~vpG~~~y~gaKiqlldlpgiiegak 121 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLT---GTFSEVAAY---------------EFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAK 121 (358)
T ss_pred eeeeEEecCccchhhhhhhhc---CCCCccccc---------------cceeEEEecceEeccccceeeecCcchhcccc
Confidence 378999999999999999995 433322221 123444445555678899999999998663
Q ss_pred -----HHHHHHHHHhcCeEEEEEeCCCCCch
Q 008294 169 -----TLEVERALRVLDGAICLFDSVAGVEP 194 (571)
Q Consensus 169 -----~~~~~~~l~~~D~~ilVvda~~g~~~ 194 (571)
..+++...+.+.++++|.|+...+..
T Consensus 122 dgkgrg~qviavartcnli~~vld~~kp~~h 152 (358)
T KOG1487|consen 122 DGKGRGKQVIAVARTCNLIFIVLDVLKPLSH 152 (358)
T ss_pred cCCCCccEEEEEeecccEEEEEeeccCcccH
Confidence 34466677888999999999876543
No 408
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.64 E-value=0.00013 Score=72.29 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=36.5
Q ss_pred HHHHHHhcCeEEEEEeCCCCC-chhHHHH-HHHHHhcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGV-EPQSETV-WRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~-~~~~~~~-~~~~~~~~~p~ivviNK~D~~~ 221 (571)
....++.+|.+++|+|+.+.. .....+- +..+...++|.++|+||+|+..
T Consensus 30 ~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~ 81 (245)
T TIGR00157 30 TRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLD 81 (245)
T ss_pred ECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCC
Confidence 334688999999999998644 3333333 3455567899999999999854
No 409
>PRK13796 GTPase YqeH; Provisional
Probab=97.63 E-value=8.6e-05 Score=78.01 Aligned_cols=61 Identities=21% Similarity=0.314 Sum_probs=40.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhc-CCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYT-GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~-g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+++.++|.+|+|||||+|+|+... +..... .....+|+|.......+. ....++||||...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~-------------~~s~~pGTT~~~~~~~l~---~~~~l~DTPGi~~ 222 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVI-------------TTSRFPGTTLDKIEIPLD---DGSFLYDTPGIIH 222 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceE-------------EecCCCCccceeEEEEcC---CCcEEEECCCccc
Confidence 579999999999999999998432 211110 011235777766554442 2258999999753
No 410
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.63 E-value=8.3e-05 Score=76.67 Aligned_cols=58 Identities=22% Similarity=0.244 Sum_probs=40.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
...++++|-+|+|||||+|+|+.... ... ....|+|.....+.+. ..+.|+||||..-
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~---~~~--------------s~~PG~Tk~~q~i~~~---~~i~LlDtPGii~ 189 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKV---AKT--------------SNRPGTTKGIQWIKLD---DGIYLLDTPGIIP 189 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccc---eee--------------CCCCceecceEEEEcC---CCeEEecCCCcCC
Confidence 45699999999999999999972222 111 1124777766655543 4499999999643
No 411
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.60 E-value=5.5e-06 Score=75.65 Aligned_cols=115 Identities=19% Similarity=0.317 Sum_probs=77.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC---eEEEEEcCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---HRINIIDTPGH 165 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~---~~i~liDTPG~ 165 (571)
....+.|+|..++|||+++.+.+++......... -|+.+... .+.|+. .++.|||..|+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAt----------------Igvdfalk--Vl~wdd~t~vRlqLwdIagQ 85 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRAT----------------IGVDFALK--VLQWDDKTIVRLQLWDIAGQ 85 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHH----------------HhHHHHHH--HhccChHHHHHHHHhcchhh
Confidence 3567889999999999999999854332111000 01111111 123332 46789999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh------cC--CCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK------YG--VPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~------~~--~p~ivviNK~D~~~ 221 (571)
+.|...+.-+++.+.++++|+|.+...+......|.+-.. .+ +|.++..||+|...
T Consensus 86 erfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~ 149 (229)
T KOG4423|consen 86 ERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK 149 (229)
T ss_pred hhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccCh
Confidence 9999888889999999999999997766555555543221 23 45577789999754
No 412
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.59 E-value=9.8e-05 Score=75.02 Aligned_cols=65 Identities=23% Similarity=0.253 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+.++++|++|+|||||+|+|+.... ...|.+.. .....+++|.......+... ..++||||..+|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~--~~~g~v~~--------~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD--LATGEISE--------KLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh--ccccceec--------cCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 6799999999999999999972211 11121110 01122335555544444322 379999999775
No 413
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.58 E-value=0.0006 Score=68.26 Aligned_cols=131 Identities=13% Similarity=0.110 Sum_probs=66.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCC-cceeeeeecCcccccchhh----hhhhceeEeeceEE---------E-eec
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGTATMDWMEQ----EQERGITITSAATT---------T-YWN 153 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~-~~~~g~~~~g~~~~d~~~~----e~~~g~t~~~~~~~---------~-~~~ 153 (571)
+...++++|..|+||||++..|...... ....+-+............ -..-|+.+...... + ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3469999999999999999988643211 1122222211110000000 01112222111000 0 013
Q ss_pred CeEEEEEcCCCCCCcH----HHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 154 KHRINIIDTPGHVDFT----LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~----~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
++.+.||||||..... .++...+. ..|-.++|+|++.+.. ...+.++.....+ +-=++++|+|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~~~~-~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIH-IDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhCCCC-CCEEEEEeecCCC
Confidence 5789999999976432 33333332 2367899999864321 2222333333222 2357899999654
No 414
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.57 E-value=0.0002 Score=71.81 Aligned_cols=84 Identities=15% Similarity=0.135 Sum_probs=57.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------------- 152 (571)
+...++|||.+|+|||||+|+|... ....+.+ + -.||+........
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~---~a~~~Nf-P--------------F~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~ 80 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKS---KAGAANF-P--------------FCTIDPNEARVEVPDSRFDLLCPIYGPKS 80 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcC---CCCccCC-C--------------cceeccccceeecCchHHHHHHHhcCCcc
Confidence 4568999999999999999999622 1111111 1 1234333333221
Q ss_pred -cCeEEEEEcCCCCCC-------cHHHHHHHHHhcCeEEEEEeCCC
Q 008294 153 -NKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 153 -~~~~i~liDTPG~~~-------f~~~~~~~l~~~D~~ilVvda~~ 190 (571)
-...+++.|.+|... ........+|.+|+++.||++.+
T Consensus 81 ~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 81 KVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred eeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 134699999999765 34557788999999999998873
No 415
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.56 E-value=0.00022 Score=72.44 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHhcCeEEEEEeCCCCC-chhH-HHHHHHHHhcCCCeEEEEecCCccc
Q 008294 176 LRVLDGAICLFDSVAGV-EPQS-ETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 176 l~~~D~~ilVvda~~g~-~~~~-~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+..+|.+++|+|+.+.. .... ...+..+...++|.++|+||+|+..
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~ 123 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLD 123 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCC
Confidence 56789999999998775 4333 2334456678999999999999854
No 416
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.56 E-value=0.0011 Score=59.76 Aligned_cols=75 Identities=13% Similarity=0.017 Sum_probs=49.6
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCCeEEEEecCCccccchhhhHHHHH
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLGANFFRTRDMIV 232 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~ivviNK~D~~~~~~~~~~~~i~ 232 (571)
+.+.++|||+..+ ......+..+|.+++|++....-...+...++.+... ..+..+|+|+++.. .+..++.+.+.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~-~~~~~~~~~~~ 121 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP-KEGKKVFKRLS 121 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH-HHHHHHHHHHH
Confidence 7899999998654 4456789999999999988643333444555555332 35667999999743 22333444443
No 417
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.55 E-value=0.00021 Score=71.06 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=55.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...++.|+|-+|+|||||+|++........+..+ .| .+.|+|+..+..........+.++||||..-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~--vG----------~~pGVT~~V~~~iri~~rp~vy~iDTPGil~ 208 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAAR--VG----------AEPGVTRRVSERIRISHRPPVYLIDTPGILV 208 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhcccee--cc----------CCCCceeeehhheEeccCCceEEecCCCcCC
Confidence 34578999999999999999999744433332211 11 2478898888755445667799999999532
Q ss_pred -cHHHHHHHHHhcCeEEEEEeC
Q 008294 168 -FTLEVERALRVLDGAICLFDS 188 (571)
Q Consensus 168 -f~~~~~~~l~~~D~~ilVvda 188 (571)
-....+.+++.| .+.+|-|.
T Consensus 209 P~I~~~e~~lKLA-L~g~Vkd~ 229 (335)
T KOG2485|consen 209 PSIVDVEDGLKLA-LCGLVKDH 229 (335)
T ss_pred CCCCCHHHhhhhh-hccccccc
Confidence 223344444443 23344444
No 418
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.54 E-value=0.00067 Score=57.68 Aligned_cols=81 Identities=23% Similarity=0.294 Sum_probs=65.8
Q ss_pred EEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCc--eeecceEEEeccC-------ceeecCeec--CCCEEEEe
Q 008294 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHAN-------SREDVKVAL--AGDIIALA 459 (571)
Q Consensus 391 ~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~--~~~i~~i~~~~g~-------~~~~v~~a~--aGdiv~i~ 459 (571)
.+.|.....+++.|..+-+-|++|+|+.||.|....... ..||+.|+...+. +...++++. +|--+...
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~ 81 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAP 81 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeC
Confidence 466788888999999999999999999999998766543 3578888888773 335788888 78888888
Q ss_pred CCCCccccceec
Q 008294 460 GLKDTITGETLC 471 (571)
Q Consensus 460 gl~~~~~Gdtl~ 471 (571)
||+++..|+.|.
T Consensus 82 gL~~v~aG~~~~ 93 (110)
T cd03703 82 DLEKAIAGSPLL 93 (110)
T ss_pred CCccccCCCEEE
Confidence 999998898764
No 419
>PRK00098 GTPase RsgA; Reviewed
Probab=97.53 E-value=0.00028 Score=72.10 Aligned_cols=46 Identities=22% Similarity=0.246 Sum_probs=34.0
Q ss_pred HHHhcCeEEEEEeCCCCCc-hh-HHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 175 ALRVLDGAICLFDSVAGVE-PQ-SETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 175 ~l~~~D~~ilVvda~~g~~-~~-~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
.+..+|.+++|+|+.+... .. ....+..+...++|.++|+||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 3678899999999975432 22 2334455667899999999999985
No 420
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00084 Score=70.69 Aligned_cols=129 Identities=14% Similarity=0.178 Sum_probs=64.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhc----CCcceeeeeecCccc-ccchhhh-hhhceeEeece------EEEeecCeEE
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTAT-MDWMEQE-QERGITITSAA------TTTYWNKHRI 157 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~----g~~~~~g~~~~g~~~-~d~~~~e-~~~g~t~~~~~------~~~~~~~~~i 157 (571)
...++++|++|+||||++..|.... |........+..... .+..... ...|+...... ..+...++.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3568999999999999999997422 211111111111100 0000000 11122211100 0001146789
Q ss_pred EEEcCCCCCCcHH----HHHHHHHh-----cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 158 NIIDTPGHVDFTL----EVERALRV-----LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 158 ~liDTPG~~~f~~----~~~~~l~~-----~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
.||||||...... ++...+.. ..-.+||+|++.+.... ..........+ +-=+|++|+|-.
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f~~~~-~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAYESLN-YRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHhcCCC-CCEEEEEcccCC
Confidence 9999999764322 22222322 23578999998753222 22333222222 335789999964
No 421
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.50 E-value=0.00036 Score=73.21 Aligned_cols=54 Identities=19% Similarity=0.024 Sum_probs=39.5
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.+|...+......+|++++|+|+.+.......++.+.+ .+.|+++|+||+|+..
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~ 104 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLP 104 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCC
Confidence 45666666666788999999999876555444444333 2789999999999864
No 422
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.0015 Score=68.71 Aligned_cols=130 Identities=17% Similarity=0.176 Sum_probs=67.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc-------CCcceeeeeecCcc-cccchhh-hhhhceeEeeceEE-------Eee
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT-------GRNYKIGEVHEGTA-TMDWMEQ-EQERGITITSAATT-------TYW 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~-------g~~~~~g~~~~g~~-~~d~~~~-e~~~g~t~~~~~~~-------~~~ 152 (571)
....|+++|+.|+||||.+..|.... |........+.... ..+.... -..-|+.+...... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 35689999999999999999887432 11111111111100 0000000 01122222111100 011
Q ss_pred cCeEEEEEcCCCCCCc----HHHHHHHHHhc--C-eEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 153 NKHRINIIDTPGHVDF----TLEVERALRVL--D-GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f----~~~~~~~l~~~--D-~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
.++.+.||||||.... ..++...+... + -.++|+|++.+..... +.+......+ +-=++++|.|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 5789999999997542 23444444433 3 5889999987633222 3333322222 346889999963
No 423
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.47 E-value=0.0009 Score=69.56 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=67.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcC---CcceeeeeecCcccccchhhhh------hhceeEeeceEEE-------ee
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTG---RNYKIGEVHEGTATMDWMEQEQ------ERGITITSAATTT-------YW 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g---~~~~~g~~~~g~~~~d~~~~e~------~~g~t~~~~~~~~-------~~ 152 (571)
+.+.|++||++|+||||-+-.|..... ...+.+-+...+... -..|+ .-|+.+......- ..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI--GA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI--GAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh--hHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence 478999999999999999999974332 122222221111000 01111 1122222211110 01
Q ss_pred cCeEEEEEcCCCCCCc----HHHHHHHHHhc--CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 153 NKHRINIIDTPGHVDF----TLEVERALRVL--DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f----~~~~~~~l~~~--D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.++++.|+||.|...+ ..++...+..+ .-..||++++.. .....+++......++. =++++|+|-..
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~-~~I~TKlDET~ 352 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPID-GLIFTKLDETT 352 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcc-eeEEEcccccC
Confidence 5789999999997654 33344444333 446678887542 12222333333333322 36789999653
No 424
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.46 E-value=0.00085 Score=71.78 Aligned_cols=129 Identities=12% Similarity=0.165 Sum_probs=65.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC---CcceeeeeecCcc---cccchhh-hhhhceeEeeceEEE-------eecCe
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG---RNYKIGEVHEGTA---TMDWMEQ-EQERGITITSAATTT-------YWNKH 155 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g---~~~~~g~~~~g~~---~~d~~~~-e~~~g~t~~~~~~~~-------~~~~~ 155 (571)
.+.++++|+.|+||||++..|....- .-.+.+-+...+. ..+.... -...|+.+......- ...++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 46899999999999999998863221 1112221111110 0000000 011222221110000 11467
Q ss_pred EEEEEcCCCCCCcH----HHHHHHHHhc---CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 156 RINIIDTPGHVDFT----LEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 156 ~i~liDTPG~~~f~----~~~~~~l~~~---D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
.+.||||||+.... .++...+..+ +-+++|++++.+. ....+.+......++ --++++|+|..
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 89999999986542 2333333312 3568889986532 222333444443332 35889999973
No 425
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.45 E-value=0.0026 Score=67.34 Aligned_cols=137 Identities=17% Similarity=0.215 Sum_probs=84.6
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhc------CCc--ceee--eeecCc----------ccccchh------------
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYT------GRN--YKIG--EVHEGT----------ATMDWME------------ 134 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~------g~~--~~~g--~~~~g~----------~~~d~~~------------ 134 (571)
.++.+.|++||.-.+|||+.++.+.... |.. +.+. ....|- +-.|-.+
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 3567899999999999999999886321 100 0011 111111 1111111
Q ss_pred ----hhhhhceeEeeceEEEeecC---eEEEEEcCCCCCC-------------cHHHHHHHHHhcCeEEEEEe-CCCC-C
Q 008294 135 ----QEQERGITITSAATTTYWNK---HRINIIDTPGHVD-------------FTLEVERALRVLDGAICLFD-SVAG-V 192 (571)
Q Consensus 135 ----~e~~~g~t~~~~~~~~~~~~---~~i~liDTPG~~~-------------f~~~~~~~l~~~D~~ilVvd-a~~g-~ 192 (571)
.....|.|+....+++..++ .+..|+|.||... .......++...+++|+||- ++-. -
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE 464 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE 464 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence 12356888888888888755 4789999999653 23334455667788888873 2211 1
Q ss_pred chhHHHHHHHHHhcCCCeEEEEecCCccccc
Q 008294 193 EPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 193 ~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (571)
...--.+..++.-.|...|+|++|+|+...+
T Consensus 465 RSnVTDLVsq~DP~GrRTIfVLTKVDlAEkn 495 (980)
T KOG0447|consen 465 RSIVTDLVSQMDPHGRRTIFVLTKVDLAEKN 495 (980)
T ss_pred hhhHHHHHHhcCCCCCeeEEEEeecchhhhc
Confidence 1222234455666788899999999997654
No 426
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.44 E-value=0.00021 Score=65.52 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
...+++++|.+|+|||||+|+|.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 45678999999999999999996
No 427
>PRK00098 GTPase RsgA; Reviewed
Probab=97.41 E-value=0.00022 Score=72.84 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..++++|++|+|||||+|+|+
T Consensus 165 k~~~~~G~sgvGKStlin~l~ 185 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALA 185 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHh
Confidence 578999999999999999997
No 428
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.38 E-value=0.00097 Score=62.06 Aligned_cols=83 Identities=14% Similarity=0.074 Sum_probs=58.0
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccc------
Q 008294 153 NKHRINIIDTPGHVDFTLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGAN------ 223 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~------ 223 (571)
.++.+.++|||+... ......+ ..+|.+++|+.+...-.......++.+.+.+.+++ +|+|+.+....+
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~~~~ 143 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKKIY 143 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCCccc
Confidence 578899999999753 3333333 57899999998876555667788888888888875 678999853211
Q ss_pred --hhhhHHHHHHHhCC
Q 008294 224 --FFRTRDMIVTNLGA 237 (571)
Q Consensus 224 --~~~~~~~i~~~l~~ 237 (571)
....++.+.+.++.
T Consensus 144 ~~~~~~~~~~~~~~~~ 159 (169)
T cd02037 144 IFGKGGGEKLAEELGV 159 (169)
T ss_pred ccCCccHHHHHHHcCC
Confidence 12345666666544
No 429
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.38 E-value=0.00083 Score=71.22 Aligned_cols=143 Identities=14% Similarity=0.147 Sum_probs=74.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcc-----------eeeeeecCcccccchhhhhhhceeEeeceEEEeecCeE
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNY-----------KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHR 156 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~-----------~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~ 156 (571)
..+++|+|+|++|+|||||+++|....|... ..+.......+.|+.+....+......... ...+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~~~~~~~~l~~~D~~~ia~~~~~~~~~~~~----~a~~ 292 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVK----YANK 292 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHhhcCCccCCChhhhHHHHhhhHHHHHHHHH----hcCC
Confidence 3478999999999999999999987655431 112112222334443333333222222111 1245
Q ss_pred EEEEcCCCCCC----------cHHHHHHHHH--hcCeEEEEEeCC-----CCCchh---------HHHHHHHHHhcCCCe
Q 008294 157 INIIDTPGHVD----------FTLEVERALR--VLDGAICLFDSV-----AGVEPQ---------SETVWRQADKYGVPR 210 (571)
Q Consensus 157 i~liDTPG~~~----------f~~~~~~~l~--~~D~~ilVvda~-----~g~~~~---------~~~~~~~~~~~~~p~ 210 (571)
++|+||--..- ....+....+ .-|.+ ++++.. +|+... ...+...+.++++|.
T Consensus 293 ~~f~Dt~~~~t~~y~~~y~g~~~p~l~~~~~~~ryDlv-lll~pd~Pwv~DGlR~~~D~e~R~~f~~~l~~~l~~~g~~~ 371 (399)
T PRK08099 293 VAFIDTDFVTTQAFCKKYEGREHPFVQALIDEYRFDLT-ILLENNTPWVADGLRSLGSSVDRKRFQNLLKEMLKENNIEY 371 (399)
T ss_pred eEEEeCChHHHHHHHHHhCCCCCHHHHHHHHhCCCCEE-EEcCCCCCcccCCcccCCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999876321 1122233332 24754 444433 222211 122335566789995
Q ss_pred EEEEecCCccccchhhhHHHHHHHhCC
Q 008294 211 ICFVNKMDRLGANFFRTRDMIVTNLGA 237 (571)
Q Consensus 211 ivviNK~D~~~~~~~~~~~~i~~~l~~ 237 (571)
+++ ++-|. ..++.+.++.|.+.++.
T Consensus 372 v~l-~~g~~-~eR~~~a~~~i~~~l~~ 396 (399)
T PRK08099 372 VHV-ESPDY-DKRYLRCVELVDQMLGE 396 (399)
T ss_pred EEE-CCCCH-HHHHHHHHHHHHHHhhc
Confidence 544 44442 34456666666666543
No 430
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=97.34 E-value=0.0012 Score=55.25 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=61.3
Q ss_pred EEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCC-ccccce
Q 008294 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGET 469 (571)
Q Consensus 391 ~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~-~~~Gdt 469 (571)
.+.|.....|++.|.++.+-|.+|+|+.||.+...... -||..++...| ..+.+|.||+.+.+.|+++ ...||.
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~--GkVr~~~d~~g---~~v~~a~Ps~~v~i~g~~~~p~aGd~ 76 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTY--GKIRTMVDENG---KALLEAGPSTPVEILGLKDVPKAGDG 76 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCcc--ceEEEEECCCC---CCccccCCCCCEEEeeecCCccCCCE
Confidence 46788888999999999999999999999999876532 25666555544 6799999999999999987 456776
Q ss_pred ec
Q 008294 470 LC 471 (571)
Q Consensus 470 l~ 471 (571)
+.
T Consensus 77 ~~ 78 (95)
T cd03701 77 VL 78 (95)
T ss_pred EE
Confidence 64
No 431
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.0014 Score=74.08 Aligned_cols=129 Identities=15% Similarity=0.190 Sum_probs=62.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhc----CCcceeeeeecCccc---ccchh-hhhhhceeEeeceE--EE-----eecC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTAT---MDWME-QEQERGITITSAAT--TT-----YWNK 154 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~----g~~~~~g~~~~g~~~---~d~~~-~e~~~g~t~~~~~~--~~-----~~~~ 154 (571)
...|++||+.|+||||++..|.... |. .+.+-+...+.- .+... --...|+.+....- .+ ...+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~-kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGA-DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCC-CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 4689999999999999999997321 21 111111110000 00000 00112222211100 00 1146
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHH------hcCeEEEEEeCCCCCchhHHHHHHHHHhc-C-CCeEEEEecCCcc
Q 008294 155 HRINIIDTPGHVDFTLEVERALR------VLDGAICLFDSVAGVEPQSETVWRQADKY-G-VPRICFVNKMDRL 220 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~------~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~-~p~ivviNK~D~~ 220 (571)
+.+.||||||.-.........+. ..+-.++|+|++.+... ..++....... . -+-=+|++|+|-.
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~-l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDT-LNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHH-HHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 78999999994432222222222 23568999999753211 11222222221 1 1335789999964
No 432
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.32 E-value=0.0018 Score=69.84 Aligned_cols=129 Identities=18% Similarity=0.195 Sum_probs=63.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc----CCcceeeeeecCcc---cccchhh-hhhhceeEeeceEE-------Eeec
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTA---TMDWMEQ-EQERGITITSAATT-------TYWN 153 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~----g~~~~~g~~~~g~~---~~d~~~~-e~~~g~t~~~~~~~-------~~~~ 153 (571)
+...++++|+.|+||||++..|.... |. .+.+-+...+. ..+.... -...|+.+...... ....
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~ 333 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-SKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELR 333 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-CeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhcc
Confidence 34689999999999999999997322 21 12222211110 0000000 12233322211111 1124
Q ss_pred CeEEEEEcCCCCCCcHHHHHHH---HHhc---CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 154 KHRINIIDTPGHVDFTLEVERA---LRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~---l~~~---D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
++.+.+|||+|........... +... .-.++|+|+..+... ..+........+ ..-+|+||+|-.
T Consensus 334 d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~-l~~i~~~f~~~~-~~g~IlTKlDet 404 (484)
T PRK06995 334 NKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT-LNEVVQAYRGPG-LAGCILTKLDEA 404 (484)
T ss_pred CCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH-HHHHHHHhccCC-CCEEEEeCCCCc
Confidence 6689999999954433222222 2211 226899999754311 122222222223 335778999954
No 433
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.29 E-value=0.0018 Score=63.61 Aligned_cols=64 Identities=8% Similarity=0.000 Sum_probs=44.9
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHH------hcCCCeEEEEecCC
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD------KYGVPRICFVNKMD 218 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~------~~~~p~ivviNK~D 218 (571)
+++.+.||||||+.. ..+..++..+|.+|+.+.+....-..+.+.+..+. ..++|..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468999999999875 55677899999999888775322222333332222 34678889999987
No 434
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=97.25 E-value=0.0024 Score=51.18 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=51.3
Q ss_pred CeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCCCccc
Q 008294 389 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTIT 466 (571)
Q Consensus 389 p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~~ 466 (571)
|....|.+.+.-...+ +..|+|..|+|++|..| .|. +++.+..++-+ .++|++|.+||-|+| .|..++..
T Consensus 4 p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~G~--~iG~I~sIe~~-~k~v~~A~~G~eVai~Ieg~~~i~e 75 (81)
T PF14578_consen 4 PGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----DGR--KIGRIKSIEDN-GKNVDEAKKGDEVAISIEGPTQIKE 75 (81)
T ss_dssp SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----CSS--CEEEEEEEEET-TEEESEEETT-EEEEEEET--TB-T
T ss_pred ceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----CCE--EEEEEEEeEEC-CcCccccCCCCEEEEEEeCCccCCC
Confidence 4455555555555657 77779999999999999 333 47888888744 499999999999998 45446777
Q ss_pred cceec
Q 008294 467 GETLC 471 (571)
Q Consensus 467 Gdtl~ 471 (571)
||+|.
T Consensus 76 GDiLy 80 (81)
T PF14578_consen 76 GDILY 80 (81)
T ss_dssp T-EEE
T ss_pred CCEEe
Confidence 88763
No 435
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.23 E-value=0.00068 Score=69.90 Aligned_cols=82 Identities=13% Similarity=0.064 Sum_probs=61.2
Q ss_pred eeEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-----------chhHHHHHHHHHh----
Q 008294 141 ITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-----------EPQSETVWRQADK---- 205 (571)
Q Consensus 141 ~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-----------~~~~~~~~~~~~~---- 205 (571)
.|.......+.+++..+.+||++|+......+...+..++++|+|||.++-- .......++.+..
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 3444555566778899999999999999999999999999999999998631 1122233333322
Q ss_pred cCCCeEEEEecCCcccc
Q 008294 206 YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 206 ~~~p~ivviNK~D~~~~ 222 (571)
.++|+++++||.|+...
T Consensus 227 ~~~pill~~NK~D~f~~ 243 (317)
T cd00066 227 ANTSIILFLNKKDLFEE 243 (317)
T ss_pred cCCCEEEEccChHHHHH
Confidence 47899999999997653
No 436
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.23 E-value=0.0014 Score=68.15 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=88.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeec--------eEEEee---cCeEEE
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA--------ATTTYW---NKHRIN 158 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~--------~~~~~~---~~~~i~ 158 (571)
-.-|++||++-+||||++.++....-. ..+.......+..|-.|+. ..|-|+.+. .+.+.. -..++-
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~Vl-PnI~d~~~reRa~DELPQS-~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVL-PNIEDEYERERARDELPQS-GAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcC-CCCCCHHHHHHhhhcCCcC-CCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 356999999999999999999744321 1110000001111111111 112222111 111111 246788
Q ss_pred EEcCCCCC--------C-----------------cHHHHHHHHHhc------CeEEEEEeCCCC------CchhHHHHHH
Q 008294 159 IIDTPGHV--------D-----------------FTLEVERALRVL------DGAICLFDSVAG------VEPQSETVWR 201 (571)
Q Consensus 159 liDTPG~~--------~-----------------f~~~~~~~l~~~------D~~ilVvda~~g------~~~~~~~~~~ 201 (571)
||||-|+. + |...+.-+.+.. =|+++--|++-+ .....++...
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 99999852 1 333333333322 234444566522 2234567788
Q ss_pred HHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 202 QADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 202 ~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
.++..++|+++++|-.+-...+-.++.+++.++++...+|+..
T Consensus 175 ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc 217 (492)
T PF09547_consen 175 ELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNC 217 (492)
T ss_pred HHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeeh
Confidence 9999999999999999876666778889999999887776654
No 437
>PHA02518 ParA-like protein; Provisional
Probab=97.22 E-value=0.0038 Score=60.04 Aligned_cols=77 Identities=10% Similarity=0.077 Sum_probs=46.6
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh-----cCCCeE-EEEecCCccccchhh
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK-----YGVPRI-CFVNKMDRLGANFFR 226 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~-----~~~p~i-vviNK~D~~~~~~~~ 226 (571)
..+.+.||||||... .....++..+|.+|+++.+..---......++.+.. .+.|.+ ++.|+.+.......+
T Consensus 75 ~~~d~viiD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~~~~~~ 152 (211)
T PHA02518 75 SGYDYVVVDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKNTQLYRE 152 (211)
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCcchHHHH
Confidence 457899999999743 567889999999999998864322222233332222 245554 566776643332233
Q ss_pred hHHHH
Q 008294 227 TRDMI 231 (571)
Q Consensus 227 ~~~~i 231 (571)
+.+.+
T Consensus 153 ~~~~l 157 (211)
T PHA02518 153 ARKAL 157 (211)
T ss_pred HHHHH
Confidence 44444
No 438
>PRK13796 GTPase YqeH; Provisional
Probab=97.13 E-value=0.0027 Score=66.74 Aligned_cols=49 Identities=16% Similarity=0.020 Sum_probs=33.9
Q ss_pred HHHHHHHhcC-eEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLD-GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D-~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.+...+...| .+++|||+.+-.......+.+.. .+.|+++|+||+|+..
T Consensus 61 ~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~ 110 (365)
T PRK13796 61 KLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLP 110 (365)
T ss_pred HHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCC
Confidence 3566666666 89999999875544433332222 2789999999999864
No 439
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.09 E-value=0.0015 Score=68.01 Aligned_cols=82 Identities=15% Similarity=0.056 Sum_probs=61.8
Q ss_pred eeEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-----------chhHHHHHHHHHh----
Q 008294 141 ITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-----------EPQSETVWRQADK---- 205 (571)
Q Consensus 141 ~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-----------~~~~~~~~~~~~~---- 205 (571)
.|.......+.+++..+.+||..|+..+...+...+..++++|+|||.++-- .......++.+..
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 3444555667778899999999999999999999999999999999998521 1222333443332
Q ss_pred cCCCeEEEEecCCcccc
Q 008294 206 YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 206 ~~~p~ivviNK~D~~~~ 222 (571)
.++|+++++||.|+...
T Consensus 250 ~~~piil~~NK~D~~~~ 266 (342)
T smart00275 250 ANTSIILFLNKIDLFEE 266 (342)
T ss_pred cCCcEEEEEecHHhHHH
Confidence 47899999999998643
No 440
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.09 E-value=0.0043 Score=60.05 Aligned_cols=85 Identities=14% Similarity=0.047 Sum_probs=49.6
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHH--HHhcCeEEEEEeCCCCCchhHHHHHHHHHhc----CCCe-EEEEecCCccccchh
Q 008294 153 NKHRINIIDTPGHVDFTLEVERA--LRVLDGAICLFDSVAGVEPQSETVWRQADKY----GVPR-ICFVNKMDRLGANFF 225 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~--l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~----~~p~-ivviNK~D~~~~~~~ 225 (571)
+.+.+.||||+|....... ... ++.+|.++++++...--......+++.++.. +.+. .+|+||.|.. ...
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--~~~ 191 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD--RET 191 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--cHH
Confidence 4689999999886531111 112 3479999999977532111223333333332 4444 3889999954 233
Q ss_pred hhHHHHHHHhCCcce
Q 008294 226 RTRDMIVTNLGAKPL 240 (571)
Q Consensus 226 ~~~~~i~~~l~~~~~ 240 (571)
+.++++.+.++....
T Consensus 192 ~~~~~~~~~~~~~vl 206 (212)
T cd02117 192 ELIDAFAERLGTQVI 206 (212)
T ss_pred HHHHHHHHHcCCCEE
Confidence 456777777776443
No 441
>PRK12288 GTPase RsgA; Reviewed
Probab=97.08 E-value=0.003 Score=65.80 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=32.8
Q ss_pred HhcCeEEEEEeCCCCCchhHHHHH-HHHHhcCCCeEEEEecCCccc
Q 008294 177 RVLDGAICLFDSVAGVEPQSETVW-RQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 177 ~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~~~p~ivviNK~D~~~ 221 (571)
..+|.+++|++..........+-| ..+...++|.++|+||+|+..
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~ 164 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLD 164 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 457999999987765554443333 445667899999999999864
No 442
>PRK01889 GTPase RsgA; Reviewed
Probab=97.06 E-value=0.0029 Score=66.29 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=37.1
Q ss_pred HHhcCeEEEEEeCCCCCch-hHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 176 LRVLDGAICLFDSVAGVEP-QSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 176 l~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
...+|.+++|+++..++.. .....+..+...+++.++|+||+|+..
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~ 156 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCE 156 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 3567999999999766666 445666777889999999999999864
No 443
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=97.06 E-value=0.011 Score=58.52 Aligned_cols=81 Identities=19% Similarity=0.198 Sum_probs=54.2
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccccchhhhHHHH
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMI 231 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~~~~~~~~i 231 (571)
+++.+.|||||+... ..+..++..+|.+|+|+++...-...+....+.+...+.+. .+++|+.|..... ...+.+
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~~~~--~~~~~l 182 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRDKTE--LGREEI 182 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCchhhh--hHHHHH
Confidence 358899999998665 45677788999999999886433334444555566667775 4889999863221 123455
Q ss_pred HHHhCC
Q 008294 232 VTNLGA 237 (571)
Q Consensus 232 ~~~l~~ 237 (571)
.+.++.
T Consensus 183 ~~~~~~ 188 (251)
T TIGR01969 183 ETILEV 188 (251)
T ss_pred HHhhCC
Confidence 555554
No 444
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.0043 Score=59.46 Aligned_cols=116 Identities=21% Similarity=0.257 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
++|.++|+--+|||++-....+...... +-++ |....+|.....- .=..+.+||-||+.+|..
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne--------Tlfl-----ESTski~~d~is~----sfinf~v~dfPGQ~~~Fd 90 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE--------TLFL-----ESTSKITRDHISN----SFINFQVWDFPGQMDFFD 90 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc--------eeEe-----eccCcccHhhhhh----hhcceEEeecCCccccCC
Confidence 5699999999999999887653221100 1111 1111111111110 114578999999988633
Q ss_pred ---HHHHHHHhcCeEEEEEeCCCCCc-hhHHHHHHHHHhc----CCCeEEEEecCCccccc
Q 008294 171 ---EVERALRVLDGAICLFDSVAGVE-PQSETVWRQADKY----GVPRICFVNKMDRLGAN 223 (571)
Q Consensus 171 ---~~~~~l~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~----~~p~ivviNK~D~~~~~ 223 (571)
....-++.+.+.|+|+|+.+... ..++-+.-..+.+ ++.+=+++-|.|-+..+
T Consensus 91 ~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 91 PSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred CccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 35667788899999999986544 3344444444544 34456889999977654
No 445
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.03 E-value=0.00078 Score=71.15 Aligned_cols=73 Identities=23% Similarity=0.271 Sum_probs=45.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|++||.+|+||||+||+|. |...-..+- .+|.|-....+.+ .-.+.|-||||..-=.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLv---G~KkVsVS~--------------TPGkTKHFQTi~l---s~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALV---GRKKVSVSS--------------TPGKTKHFQTIFL---SPSVCLCDCPGLVFPS 373 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHh---cCceeeeec--------------CCCCcceeEEEEc---CCCceecCCCCccccC
Confidence 6899999999999999999997 433222221 2344554444443 3568899999975322
Q ss_pred HHHHHHHHhcCeE
Q 008294 170 LEVERALRVLDGA 182 (571)
Q Consensus 170 ~~~~~~l~~~D~~ 182 (571)
-...++...++|+
T Consensus 374 f~~~r~emvl~Gi 386 (562)
T KOG1424|consen 374 FSPTRAEMVLNGI 386 (562)
T ss_pred CCchHHHHHHhcC
Confidence 1222344444453
No 446
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.03 E-value=0.0074 Score=51.53 Aligned_cols=59 Identities=10% Similarity=-0.016 Sum_probs=43.2
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC----CeEEEEec
Q 008294 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV----PRICFVNK 216 (571)
Q Consensus 156 ~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~----p~ivviNK 216 (571)
.+.++|||+.... .....+..+|.+++|++....-.......++.+++.+. .+.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7899999997653 45678899999999998876545555666666666554 34577885
No 447
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=0.0036 Score=61.15 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=79.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 166 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~~ 166 (571)
-..||.-||.+|-|||||++.|............ ...++........+... ..+++++||.|+.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H--------------~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfG 106 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTH--------------TLPNVKLQANTYELQESNVRLKLTIVDTVGFG 106 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCcc--------------CCCCceeecchhhhhhcCeeEEEEEEeecccc
Confidence 3579999999999999999999733221111000 01122222221111112 2468999999987
Q ss_pred Cc-------------H-HHH----------HHHHH-----hcCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEec
Q 008294 167 DF-------------T-LEV----------ERALR-----VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNK 216 (571)
Q Consensus 167 ~f-------------~-~~~----------~~~l~-----~~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK 216 (571)
|- . .+. .+++. ..+++++.|..+ +++...+.-.++.+.. .+.+|-||-|
T Consensus 107 DQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVNIIPvIAK 185 (406)
T KOG3859|consen 107 DQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVNIIPVIAK 185 (406)
T ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhhhHHHHHH
Confidence 61 1 111 11221 125677777665 6776666655555543 4677778999
Q ss_pred CCccccc-hhhhHHHHHHHhCCc-ceeeeccCC
Q 008294 217 MDRLGAN-FFRTRDMIVTNLGAK-PLVVQLPVG 247 (571)
Q Consensus 217 ~D~~~~~-~~~~~~~i~~~l~~~-~~~~~~pi~ 247 (571)
.|-...+ +.+....|...|-.+ .-..+.|..
T Consensus 186 aDtisK~eL~~FK~kimsEL~sngv~IYqfPtD 218 (406)
T KOG3859|consen 186 ADTISKEELKRFKIKIMSELVSNGVQIYQFPTD 218 (406)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCceeeeccch
Confidence 9976533 444444444444333 334566654
No 448
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.98 E-value=0.0051 Score=52.04 Aligned_cols=71 Identities=25% Similarity=0.233 Sum_probs=46.3
Q ss_pred EEEEc-CCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 93 IGIMA-HIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 93 I~ivG-~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
|++.| ..|+||||+.-.|...... .|. .....|.. ..+.+.++|||+... ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~---~~~---~vl~~d~d-------------------~~~d~viiD~p~~~~--~~ 54 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR---RGK---RVLLIDLD-------------------PQYDYIIIDTPPSLG--LL 54 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh---CCC---cEEEEeCC-------------------CCCCEEEEeCcCCCC--HH
Confidence 56666 6799999999988633221 000 00011111 116799999999765 34
Q ss_pred HHHHHHhcCeEEEEEeCCC
Q 008294 172 VERALRVLDGAICLFDSVA 190 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~ 190 (571)
...++..+|.+++++++..
T Consensus 55 ~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 55 TRNALAAADLVLIPVQPSP 73 (104)
T ss_pred HHHHHHHCCEEEEeccCCH
Confidence 5588899999999998864
No 449
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=96.98 E-value=0.0089 Score=60.09 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=47.8
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHH----HhcCCCeE-EEEecCCccccchhhh
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA----DKYGVPRI-CFVNKMDRLGANFFRT 227 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~----~~~~~p~i-vviNK~D~~~~~~~~~ 227 (571)
+++.+.||||||..... .+..++..+|.+|+++.+...-.......++.+ ...+++++ +|+|+.+. ...
T Consensus 116 ~~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-----~~~ 189 (270)
T PRK13185 116 DDYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-----TDL 189 (270)
T ss_pred ccCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-----HHH
Confidence 46889999999865322 245568899999999977432112222222222 23456654 78999773 223
Q ss_pred HHHHHHHhCCcc
Q 008294 228 RDMIVTNLGAKP 239 (571)
Q Consensus 228 ~~~i~~~l~~~~ 239 (571)
++++.+.++...
T Consensus 190 ~~~~~~~~g~~v 201 (270)
T PRK13185 190 IDKFNEAVGLKV 201 (270)
T ss_pred HHHHHHHcCCCE
Confidence 455555565543
No 450
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=96.96 E-value=0.0092 Score=57.28 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=50.7
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG 221 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~ 221 (571)
..+.+.|||||..... .+.......+|.+|+|+++...-........+.+...+.+++ +|+||.|...
T Consensus 126 ~~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 126 KYFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred hcCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 3678999999984332 233345567899999999976666667777788888888865 7899999643
No 451
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.95 E-value=0.011 Score=58.45 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=52.1
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh--cCCCeEEEEecCCccccchhhhHHHH
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLGANFFRTRDMI 231 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~~~~~~~~~~i 231 (571)
+.+.+||||+.. ......++..+|.+++++.+..--.......+ ..... ...+.-+|+|+.|.......++.+.+
T Consensus 115 ~D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~~ 192 (246)
T TIGR03371 115 RDWVLIDVPRGP--SPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPARQLSRDVRAVL 192 (246)
T ss_pred CCEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcchhhHHHHHHHH
Confidence 479999999953 45677889999999999987521111111122 22221 23456789999996544345566677
Q ss_pred HHHhCCc
Q 008294 232 VTNLGAK 238 (571)
Q Consensus 232 ~~~l~~~ 238 (571)
++.++..
T Consensus 193 ~~~~~~~ 199 (246)
T TIGR03371 193 RQTLGSR 199 (246)
T ss_pred HHHhccc
Confidence 7777654
No 452
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.92 E-value=0.0021 Score=77.55 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=62.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-ecCeEEEEEcCCCCCC-
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGHVD- 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~liDTPG~~~- 167 (571)
.+=..|||++|+||||++..- |....... .......+|+. ....|. |-...-.+|||+|..-
T Consensus 111 LPWYlviG~~gsGKtt~l~~s----gl~~pl~~---------~~~~~~~~~~~---~t~~c~wwf~~~avliDtaG~y~~ 174 (1169)
T TIGR03348 111 LPWYLVIGPPGSGKTTLLQNS----GLKFPLAE---------RLGAAALRGVG---GTRNCDWWFTDEAVLIDTAGRYTT 174 (1169)
T ss_pred CCCEEEECCCCCchhHHHHhC----CCCCcCch---------hhccccccCCC---CCcccceEecCCEEEEcCCCcccc
Confidence 466899999999999999876 21110000 00000001110 011222 2335677999999321
Q ss_pred -------cHHHHHHH---H------HhcCeEEEEEeCCCCCch--h--------HHHHHHHHH---hcCCCeEEEEecCC
Q 008294 168 -------FTLEVERA---L------RVLDGAICLFDSVAGVEP--Q--------SETVWRQAD---KYGVPRICFVNKMD 218 (571)
Q Consensus 168 -------f~~~~~~~---l------~~~D~~ilVvda~~g~~~--~--------~~~~~~~~~---~~~~p~ivviNK~D 218 (571)
...++... + +-.||+|++||+.+=... . .+..+..+. ...+|+.|+++|||
T Consensus 175 ~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~D 254 (1169)
T TIGR03348 175 QDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKAD 254 (1169)
T ss_pred CCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecch
Confidence 12222222 2 235999999999853321 1 111122222 34789999999999
Q ss_pred ccc
Q 008294 219 RLG 221 (571)
Q Consensus 219 ~~~ 221 (571)
+..
T Consensus 255 ll~ 257 (1169)
T TIGR03348 255 LLA 257 (1169)
T ss_pred hhc
Confidence 863
No 453
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.91 E-value=0.014 Score=58.54 Aligned_cols=80 Identities=18% Similarity=0.141 Sum_probs=47.8
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHH----HhcCCCeE-EEEecCCccccchhhhH
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA----DKYGVPRI-CFVNKMDRLGANFFRTR 228 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~----~~~~~p~i-vviNK~D~~~~~~~~~~ 228 (571)
.+.+.||||||.... ..+..++..+|.+|+++.+...--......++.+ ...+++.+ +|+|++|.. ..+
T Consensus 115 ~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~-----~~i 188 (267)
T cd02032 115 EYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDKT-----DLI 188 (267)
T ss_pred cCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCHH-----HHH
Confidence 578999999986532 2344568999999999987533222223333222 23455544 688999841 233
Q ss_pred HHHHHHhCCcc
Q 008294 229 DMIVTNLGAKP 239 (571)
Q Consensus 229 ~~i~~~l~~~~ 239 (571)
+++.+.++...
T Consensus 189 ~~~~~~~~~~v 199 (267)
T cd02032 189 DKFVEAVGMPV 199 (267)
T ss_pred HHHHHhCCCCE
Confidence 44555555443
No 454
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.0069 Score=62.02 Aligned_cols=124 Identities=21% Similarity=0.305 Sum_probs=65.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhc---CCccee--e-eeecCcccccchhh-hhhhceeEeeceEEE------------
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYT---GRNYKI--G-EVHEGTATMDWMEQ-EQERGITITSAATTT------------ 150 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~--g-~~~~g~~~~d~~~~-e~~~g~t~~~~~~~~------------ 150 (571)
.-.|.++|--|+||||.+-.|.++- |..... + .+..| ..|.... -.+.++.+..+....
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRag--AfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAG--AFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccc--hHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 3467899999999999999987432 221111 0 11111 1111111 122233332221111
Q ss_pred -eecCeEEEEEcCCCCCCcHH----HHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcC--CCe-EEEEecCCcc
Q 008294 151 -YWNKHRINIIDTPGHVDFTL----EVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYG--VPR-ICFVNKMDRL 220 (571)
Q Consensus 151 -~~~~~~i~liDTPG~~~f~~----~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~--~p~-ivviNK~D~~ 220 (571)
.-+++.+.|+||.|...-.. |+..... ..|-+|+|+||+-|.... .+++.++ +-+ -++++|+|-.
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae-----~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE-----AQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH-----HHHHHHHHhhccceEEEEecccC
Confidence 11578999999999654322 2222222 239999999998764321 2222222 221 4789999953
No 455
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=96.87 E-value=0.012 Score=59.79 Aligned_cols=85 Identities=16% Similarity=0.052 Sum_probs=50.0
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh----cCCCeE-EEEecCCccccchhhhH
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPRI-CFVNKMDRLGANFFRTR 228 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~----~~~p~i-vviNK~D~~~~~~~~~~ 228 (571)
++.+.||||||... ......++..||.+|+++++...--.....+++.++. .+++.. +|+|+.|. ...+
T Consensus 115 ~yD~IiIDt~~~l~-~~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~-----~~~~ 188 (290)
T CHL00072 115 EYDIILFDVLGDVV-CGGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK-----RDLI 188 (290)
T ss_pred cCCEEEEecCCcce-echhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc-----hhHH
Confidence 57899999998632 2234456788999999998753221222233322222 234443 78899873 2345
Q ss_pred HHHHHHhCCcceeeecc
Q 008294 229 DMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 229 ~~i~~~l~~~~~~~~~p 245 (571)
+++.+.++..... .+|
T Consensus 189 ~~~~~~~~~~vl~-~Ip 204 (290)
T CHL00072 189 DKYVEACPMPVLE-VLP 204 (290)
T ss_pred HHHHHHcCCceEE-ECC
Confidence 5566667665443 444
No 456
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.81 E-value=0.0097 Score=48.92 Aligned_cols=73 Identities=22% Similarity=0.152 Sum_probs=48.7
Q ss_pred EEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH-
Q 008294 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE- 171 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~- 171 (571)
+++.|..|+||||++..|...... .|..+ ..+ + .+.++|+||..+....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~----------------------~g~~v----~~~--~--d~iivD~~~~~~~~~~~ 51 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK----------------------RGKRV----LLI--D--DYVLIDTPPGLGLLVLL 51 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----------------------CCCeE----EEE--C--CEEEEeCCCCccchhhh
Confidence 678899999999999999733211 01111 011 1 7899999997763321
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchh
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQ 195 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~ 195 (571)
....+..+|.++++++....-...
T Consensus 52 ~~~~~~~~~~vi~v~~~~~~~~~~ 75 (99)
T cd01983 52 CLLALLAADLVIIVTTPEALAVLG 75 (99)
T ss_pred hhhhhhhCCEEEEecCCchhhHHH
Confidence 256778889999999887543333
No 457
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=96.72 E-value=0.014 Score=58.61 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=47.4
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHH----hcCCCe-EEEEecCCccccchhhh
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD----KYGVPR-ICFVNKMDRLGANFFRT 227 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~----~~~~p~-ivviNK~D~~~~~~~~~ 227 (571)
+.+.+.||||||..... .+..++..+|.+|+++...-.-.......++.+. ..+++. -+|+|+.|.. ..
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----~~ 187 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT-----DL 187 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH-----HH
Confidence 46899999999854311 1224578999999988664221122223333222 235554 3788999853 34
Q ss_pred HHHHHHHhCCcc
Q 008294 228 RDMIVTNLGAKP 239 (571)
Q Consensus 228 ~~~i~~~l~~~~ 239 (571)
++++.+.++...
T Consensus 188 ~~~~~~~~~~~v 199 (268)
T TIGR01281 188 IERFNERVGMPV 199 (268)
T ss_pred HHHHHHHcCCCE
Confidence 556666666543
No 458
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.043 Score=55.51 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHH
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.+.-.|+++|.-|+|||||++.|.
T Consensus 186 tdf~VIgvlG~QgsGKStllslLa 209 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLA 209 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHh
Confidence 567789999999999999999885
No 459
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=96.65 E-value=0.011 Score=59.62 Aligned_cols=85 Identities=9% Similarity=-0.038 Sum_probs=48.6
Q ss_pred ecCeEEEEEcCCCCCCcH-HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHH---hcCCCeE-EEEecCCccccchhh
Q 008294 152 WNKHRINIIDTPGHVDFT-LEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD---KYGVPRI-CFVNKMDRLGANFFR 226 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~-~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~---~~~~p~i-vviNK~D~~~~~~~~ 226 (571)
++++.+.||||||..... -....++..+|.+++++....---......++.+. ..+.++. +|+|+.+.. ...+
T Consensus 114 ~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~--~~~~ 191 (273)
T PRK13232 114 TDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVD--GERE 191 (273)
T ss_pred cccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCC--ccHH
Confidence 356899999999864211 11122345789999999764211111112333333 3355554 778976532 1255
Q ss_pred hHHHHHHHhCCc
Q 008294 227 TRDMIVTNLGAK 238 (571)
Q Consensus 227 ~~~~i~~~l~~~ 238 (571)
+++++++.++..
T Consensus 192 ~~e~l~~~~~~~ 203 (273)
T PRK13232 192 LLEAFAKKLGSQ 203 (273)
T ss_pred HHHHHHHHhCCC
Confidence 678888888764
No 460
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.64 E-value=0.0016 Score=66.81 Aligned_cols=61 Identities=23% Similarity=0.418 Sum_probs=43.9
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
..++...++|||-+|+||||+||+|.... ....|. ..|+|..+..+.+ +..|.|+|.||.
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k--~C~vg~---------------~pGvT~smqeV~L---dk~i~llDsPgi 307 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRK--ACNVGN---------------VPGVTRSMQEVKL---DKKIRLLDSPGI 307 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhc--cccCCC---------------Cccchhhhhheec---cCCceeccCCce
Confidence 34567889999999999999999997332 222232 2466666655544 568999999996
Q ss_pred C
Q 008294 166 V 166 (571)
Q Consensus 166 ~ 166 (571)
.
T Consensus 308 v 308 (435)
T KOG2484|consen 308 V 308 (435)
T ss_pred e
Confidence 4
No 461
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.60 E-value=0.019 Score=57.61 Aligned_cols=84 Identities=12% Similarity=-0.027 Sum_probs=45.1
Q ss_pred cCeEEEEEcCCCCCCcHHH-HHHHHHhcCeEEEEEeCCCCCchhHHHHHHH---H-HhcCCCeEEE-EecCCccccchhh
Q 008294 153 NKHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQ---A-DKYGVPRICF-VNKMDRLGANFFR 226 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~-~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~---~-~~~~~p~ivv-iNK~D~~~~~~~~ 226 (571)
+.+.+.||||||....... ...++..+|.+|+++.+..--.......++. + ...+.++..| .|+.. .....+
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~--~~~~~~ 192 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN--TDREDE 192 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHHHHHHHHHHHHHHhCccCCCceEEEEEecCC--ChhHHH
Confidence 3678999999986531111 1122346999999997753111111222222 2 2235666544 45422 222345
Q ss_pred hHHHHHHHhCCc
Q 008294 227 TRDMIVTNLGAK 238 (571)
Q Consensus 227 ~~~~i~~~l~~~ 238 (571)
.++++++.++..
T Consensus 193 ~~~~l~~~~g~~ 204 (270)
T cd02040 193 LIDAFAKRLGTQ 204 (270)
T ss_pred HHHHHHHHcCCC
Confidence 677787777764
No 462
>CHL00175 minD septum-site determining protein; Validated
Probab=96.59 E-value=0.057 Score=54.61 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=55.5
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccch--hhhHHH
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANF--FRTRDM 230 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~--~~~~~~ 230 (571)
.+.+.|||||+... .....++..+|.+++|++....--......++.+...+.+ .-+|+|+++....+. ....++
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~ 203 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMMSVRD 203 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhhccccHHH
Confidence 68899999998754 4566778889999999987643334444555666665543 567899998532111 113566
Q ss_pred HHHHhCCcc
Q 008294 231 IVTNLGAKP 239 (571)
Q Consensus 231 i~~~l~~~~ 239 (571)
+.+.++...
T Consensus 204 l~~~~~~~~ 212 (281)
T CHL00175 204 VQEMLGIPL 212 (281)
T ss_pred HHHHhCCCe
Confidence 777777643
No 463
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.54 E-value=0.0013 Score=67.22 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=24.5
Q ss_pred cCCCCCeeEEEEEcCCCCchHHHHHHHH
Q 008294 84 VIPLKDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 84 ~~~~~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
....+....|++||.+|+|||+++|.|.
T Consensus 301 Lh~dkkqISVGfiGYPNvGKSSiINTLR 328 (572)
T KOG2423|consen 301 LHSDKKQISVGFIGYPNVGKSSIINTLR 328 (572)
T ss_pred hccCccceeeeeecCCCCchHHHHHHHh
Confidence 3456677899999999999999999996
No 464
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.0075 Score=71.06 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCC--
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD-- 167 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~-- 167 (571)
+=-.|||++|+||||++... |.... ....+...|..... ..+|+| -...-.+|||.|-.-
T Consensus 126 PWy~viG~pgsGKTtal~~s----gl~Fp------------l~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q 188 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNS----GLQFP------------LAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQ 188 (1188)
T ss_pred CceEEecCCCCCcchHHhcc----cccCc------------chhhhccccccCCC-CcccCcccccceEEEcCCcceecc
Confidence 44679999999999998754 21110 00111111111111 223333 345678999999321
Q ss_pred ----c--HHHHH---------HHHHhcCeEEEEEeCCCCCch--hHH-HHH-------HHHH---hcCCCeEEEEecCCc
Q 008294 168 ----F--TLEVE---------RALRVLDGAICLFDSVAGVEP--QSE-TVW-------RQAD---KYGVPRICFVNKMDR 219 (571)
Q Consensus 168 ----f--~~~~~---------~~l~~~D~~ilVvda~~g~~~--~~~-~~~-------~~~~---~~~~p~ivviNK~D~ 219 (571)
. ..++. +..+-.||+|+.+|..+-.+. +.+ .+. ..++ ....|+.+++||+|+
T Consensus 189 ~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dl 268 (1188)
T COG3523 189 DSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADL 268 (1188)
T ss_pred cCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccc
Confidence 1 11222 223446999999998753322 222 112 1222 247899999999998
Q ss_pred cc
Q 008294 220 LG 221 (571)
Q Consensus 220 ~~ 221 (571)
..
T Consensus 269 l~ 270 (1188)
T COG3523 269 LP 270 (1188)
T ss_pred cc
Confidence 64
No 465
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=96.52 E-value=0.07 Score=53.57 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
...+|.++|..++|||||+..|-
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klq 73 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQ 73 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhh
Confidence 45799999999999999999994
No 466
>PRK13695 putative NTPase; Provisional
Probab=96.48 E-value=0.0061 Score=56.99 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=29.9
Q ss_pred HhcCeEEEEEe---CCCCCchhHHHHHHHHHhcCCCeEEEEecC
Q 008294 177 RVLDGAICLFD---SVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (571)
Q Consensus 177 ~~~D~~ilVvd---a~~g~~~~~~~~~~~~~~~~~p~ivviNK~ 217 (571)
..+|. +++| ..+....+..+.+..+.+.+.|+++++||.
T Consensus 95 ~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 95 EEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred CCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 34455 7899 566666777788888888899999999984
No 467
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.46 E-value=0.0044 Score=57.92 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=34.7
Q ss_pred CeEEEEEeCCCCCchhHHHHHHH--HHhcCCCeEEEEecCCccc
Q 008294 180 DGAICLFDSVAGVEPQSETVWRQ--ADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~--~~~~~~p~ivviNK~D~~~ 221 (571)
|++++|+|+..........+.+. +...+.|+++|+||+|+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999998877776666666 4456799999999999964
No 468
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.43 E-value=0.021 Score=57.94 Aligned_cols=143 Identities=22% Similarity=0.233 Sum_probs=73.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCccc----ccchhh-hhhhceeEeeceEE-----Ee------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTAT----MDWMEQ-EQERGITITSAATT-----TY------ 151 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~----~d~~~~-e~~~g~t~~~~~~~-----~~------ 151 (571)
++...|.++|-.|+||||-+..|.+..-......-+..+.|+ .+.... -.+-|+.+-..... +-
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 346788999999999999999997442211111111111111 111111 12234433332100 00
Q ss_pred --ecCeEEEEEcCCCCCC----cHHHHHHHHHhc---Ce-----EEEEEeCCCCCchhHHHHHHHHHhcC--CCe-EEEE
Q 008294 152 --WNKHRINIIDTPGHVD----FTLEVERALRVL---DG-----AICLFDSVAGVEPQSETVWRQADKYG--VPR-ICFV 214 (571)
Q Consensus 152 --~~~~~i~liDTPG~~~----f~~~~~~~l~~~---D~-----~ilVvda~~g~~~~~~~~~~~~~~~~--~p~-ivvi 214 (571)
-+++.+.||||+|--. ...++..-.+.+ +. +++|+||.-|-.. +.+++.++ +++ =+++
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna-----l~QAk~F~eav~l~GiIl 291 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA-----LSQAKIFNEAVGLDGIIL 291 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH-----HHHHHHHHHhcCCceEEE
Confidence 1578999999999543 344444333333 33 7788899877543 22222221 222 4789
Q ss_pred ecCCccccchhhhHHHHHHHhCC
Q 008294 215 NKMDRLGANFFRTRDMIVTNLGA 237 (571)
Q Consensus 215 NK~D~~~~~~~~~~~~i~~~l~~ 237 (571)
+|+|- ...--++-.|...++.
T Consensus 292 TKlDg--tAKGG~il~I~~~l~~ 312 (340)
T COG0552 292 TKLDG--TAKGGIILSIAYELGI 312 (340)
T ss_pred Eeccc--CCCcceeeeHHHHhCC
Confidence 99993 2223334445555554
No 469
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.077 Score=48.29 Aligned_cols=23 Identities=26% Similarity=0.135 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..+|+|.|++|+|||||+..+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 46899999999999999999873
No 470
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=96.22 E-value=0.0081 Score=56.81 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=53.4
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC---eEEEEecCCccccc-hhhhHH
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP---RICFVNKMDRLGAN-FFRTRD 229 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p---~ivviNK~D~~~~~-~~~~~~ 229 (571)
.+.+.|||||+..... +...+..+|.+|+++++..---..+......+...+.+ ..+|+||.+.-..+ ..+...
T Consensus 94 ~yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~~~~~~~~~ 171 (195)
T PF01656_consen 94 DYDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNESKLQEEIE 171 (195)
T ss_dssp TSSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCHHHHHHHHH
T ss_pred cccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCccchHHHHHH
Confidence 3899999999976643 77888999999999998643233444555666666633 36789999865333 333444
Q ss_pred HHHHHh
Q 008294 230 MIVTNL 235 (571)
Q Consensus 230 ~i~~~l 235 (571)
.+...+
T Consensus 172 ~~~~~~ 177 (195)
T PF01656_consen 172 EIEREL 177 (195)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 444433
No 471
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.22 E-value=0.032 Score=56.28 Aligned_cols=83 Identities=11% Similarity=-0.060 Sum_probs=44.7
Q ss_pred CeEEEEEcCCCCCCcHHH-HHHHHHhcCeEEEEEeCCCCCchhHHHHH---HHH-HhcCCCeE-EEEecCCccccchhhh
Q 008294 154 KHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVW---RQA-DKYGVPRI-CFVNKMDRLGANFFRT 227 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~-~~~~l~~~D~~ilVvda~~g~~~~~~~~~---~~~-~~~~~p~i-vviNK~D~~~~~~~~~ 227 (571)
.+.+.||||||....... ...++..+|.+|+++.+..---.....++ ..+ ...++++. ++.|+.. .....+.
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~~--~~~~~~~ 192 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN--VDDEKEL 192 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCCC--CchHHHH
Confidence 578999999986421111 11234478999999977532222222222 222 22355554 4456422 2233455
Q ss_pred HHHHHHHhCCc
Q 008294 228 RDMIVTNLGAK 238 (571)
Q Consensus 228 ~~~i~~~l~~~ 238 (571)
.+++++.++..
T Consensus 193 ~e~l~~~~~~~ 203 (275)
T TIGR01287 193 IDEFAKKLGTQ 203 (275)
T ss_pred HHHHHHHhCCc
Confidence 67777777764
No 472
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=96.20 E-value=0.044 Score=55.37 Aligned_cols=87 Identities=8% Similarity=-0.077 Sum_probs=46.3
Q ss_pred cCeEEEEEcCCCCCCcHH-HHHHHHHhcCeEEEEEeCCCCCchhHH---HHHHHHHh-cCCCeEEEEecCCccccchhhh
Q 008294 153 NKHRINIIDTPGHVDFTL-EVERALRVLDGAICLFDSVAGVEPQSE---TVWRQADK-YGVPRICFVNKMDRLGANFFRT 227 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~-~~~~~l~~~D~~ilVvda~~g~~~~~~---~~~~~~~~-~~~p~ivviNK~D~~~~~~~~~ 227 (571)
..+.+.||||||...... .+..++..+|.+|+++.+...--.... +.+..+.. .+..+..+++.... .....+.
T Consensus 115 ~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n~r~-~~~~~~~ 193 (279)
T PRK13230 115 LGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIYAANNICKGIKRFAKRGKSALGGIIYNGRS-VIDAPDI 193 (279)
T ss_pred cCCCEEEEecCCccccCCccccccccccceEEEeccchHHHHHHHHHHHHHHHHHhhcCCCcceEEEEeccC-CCchhHH
Confidence 368899999998532111 122345668999999987532111222 22333322 35555444443221 1112356
Q ss_pred HHHHHHHhCCcce
Q 008294 228 RDMIVTNLGAKPL 240 (571)
Q Consensus 228 ~~~i~~~l~~~~~ 240 (571)
++++.+.++....
T Consensus 194 ~e~l~~~~g~~vl 206 (279)
T PRK13230 194 VEEFAKKIGTNVI 206 (279)
T ss_pred HHHHHHHhCCcEE
Confidence 7788888876544
No 473
>PRK01889 GTPase RsgA; Reviewed
Probab=96.20 E-value=0.0075 Score=63.20 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..++++|.+|+|||||+|+|+.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g 217 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLG 217 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 4799999999999999999973
No 474
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=96.15 E-value=0.011 Score=51.25 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchHHHHHHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll 111 (571)
+|+++|..|+|||+|+.++.
T Consensus 2 kvv~~G~~gvGKt~l~~~~~ 21 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFV 21 (124)
T ss_pred EEEEECCCChhHHHHHHHHh
Confidence 68999999999999999995
No 475
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.11 E-value=0.039 Score=59.51 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=73.5
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
...++...-++|.-++|||.|+++++...-.....++ ......++..... .....+.|-|.+-.
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~--------------~~~~~avn~v~~~--g~~k~LiL~ei~~~ 484 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGT--------------TKPRYAVNSVEVK--GQQKYLILREIGED 484 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccC--------------CCCceeeeeeeec--cccceEEEeecCcc
Confidence 3445778899999999999999999821110000000 0011122222111 22334445554432
Q ss_pred -CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHH-HHhcCCCeEEEEecCCccccc--hhhhHHHHHHHhCCc
Q 008294 166 -VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQ-ADKYGVPRICFVNKMDRLGAN--FFRTRDMIVTNLGAK 238 (571)
Q Consensus 166 -~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~-~~~~~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~~~ 238 (571)
.++..+-. ..+|.+++++|.+......-.. .... -....+|.++|..|+|+.... ..-..++.+..++..
T Consensus 485 ~~~~l~~ke---~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~ 559 (625)
T KOG1707|consen 485 DQDFLTSKE---AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP 559 (625)
T ss_pred ccccccCcc---ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCCChHHHHHhcCCC
Confidence 12222222 6789999999998543332221 1111 123689999999999997654 222236777777764
No 476
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.09 E-value=0.036 Score=53.69 Aligned_cols=121 Identities=15% Similarity=0.152 Sum_probs=67.0
Q ss_pred cCCCCchHHHHHHHHH---hcCCcceeeeeecCcccccchhhhhhhc-----eeEeece-E-EE-------eecCeEEEE
Q 008294 97 AHIDAGKTTTTERVLF---YTGRNYKIGEVHEGTATMDWMEQEQERG-----ITITSAA-T-TT-------YWNKHRINI 159 (571)
Q Consensus 97 G~~~~GKSTLi~~Ll~---~~g~~~~~g~~~~g~~~~d~~~~e~~~g-----~t~~~~~-~-~~-------~~~~~~i~l 159 (571)
.-.|+||||++-.|.. ..|.....-.-++......|.+...+.| +.+.... . .+ ...++.+.|
T Consensus 9 ~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~Vl 88 (231)
T PF07015_consen 9 SKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVL 88 (231)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEE
Confidence 4578999999988852 2343333333344444444443333333 1111100 0 00 013468999
Q ss_pred EcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCch---hHHHHHHHH---HhcCCCeEEEEecCCc
Q 008294 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEP---QSETVWRQA---DKYGVPRICFVNKMDR 219 (571)
Q Consensus 160 iDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~---~~~~~~~~~---~~~~~p~ivviNK~D~ 219 (571)
+||+|.... ....++..+|.+|+-+-.+...-. .+...+..+ ....+|.-|+.|++.-
T Consensus 89 vDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 89 VDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred EeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 999998763 355677789998876654432222 233333222 2457899999999973
No 477
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.90 E-value=0.029 Score=41.74 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=25.3
Q ss_pred HHHHHH-hcCeEEEEEeCCCC--CchhHH-HHHHHHHh-c-CCCeEEEEecCC
Q 008294 172 VERALR-VLDGAICLFDSVAG--VEPQSE-TVWRQADK-Y-GVPRICFVNKMD 218 (571)
Q Consensus 172 ~~~~l~-~~D~~ilVvda~~g--~~~~~~-~~~~~~~~-~-~~p~ivviNK~D 218 (571)
...+++ ..+.+++++|.++. ...... .+++.++. + ++|+++|+||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 444554 34889999999853 332222 23344443 3 899999999998
No 478
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=95.88 E-value=0.037 Score=61.71 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=63.3
Q ss_pred EEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCCCccccce
Q 008294 392 GLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITGET 469 (571)
Q Consensus 392 ~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~~Gdt 469 (571)
+.|-++|..+..|.++-++|..|++++|..+++.+.+.....++|..+. +...+|+++..|+=|+| .+..++..||.
T Consensus 495 a~v~~vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~-~~k~~v~ev~~g~ecgi~~~~~~~~~~gD~ 573 (587)
T TIGR00487 495 AEVRQVFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLK-RFKDDVKEVSNGYECGIGIKNYNDIKEGDI 573 (587)
T ss_pred EEEEEEEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhh-ccCccccEECCCCEEEEEEeccccCCCCCE
Confidence 4555666666779999999999999999999988877655556666665 44588999999999998 55667889998
Q ss_pred ec
Q 008294 470 LC 471 (571)
Q Consensus 470 l~ 471 (571)
|-
T Consensus 574 i~ 575 (587)
T TIGR00487 574 IE 575 (587)
T ss_pred EE
Confidence 84
No 479
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.81 E-value=0.054 Score=50.45 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+.+.++|+|..|+|||||+++|+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 456899999999999999999973
No 480
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=95.80 E-value=0.053 Score=62.26 Aligned_cols=80 Identities=19% Similarity=0.195 Sum_probs=65.2
Q ss_pred EEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCCCccccc
Q 008294 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITGE 468 (571)
Q Consensus 391 ~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~~Gd 468 (571)
.+.|-++|..+..|.++-|+|..|+++.|..+++.+.+.....++|-.+. +...+|+++..|.=|+| .+..++..||
T Consensus 696 ~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk-~~k~~v~ev~~g~ecgi~~~~~~d~~~gD 774 (787)
T PRK05306 696 QAEVREVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLK-RFKDDVKEVRAGYECGIGLENYNDIKEGD 774 (787)
T ss_pred eEEEEEEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhc-ccCcCccEeCCCCEEEEEeeccccCCCCC
Confidence 35566777777889999999999999999999999887655555666665 44588999999999998 5677899999
Q ss_pred eec
Q 008294 469 TLC 471 (571)
Q Consensus 469 tl~ 471 (571)
+|-
T Consensus 775 ~ie 777 (787)
T PRK05306 775 IIE 777 (787)
T ss_pred EEE
Confidence 884
No 481
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.74 E-value=0.062 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+.|+|+|..|+|||||+++|+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999973
No 482
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.74 E-value=0.012 Score=59.55 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..+.|+|+|+.|+||||++..|..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999973
No 483
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=95.73 E-value=0.1 Score=50.73 Aligned_cols=66 Identities=15% Similarity=0.024 Sum_probs=48.8
Q ss_pred eEEEEEcCCCCCCcHHH-HHHHHHh--cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCcc
Q 008294 155 HRINIIDTPGHVDFTLE-VERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRL 220 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~-~~~~l~~--~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~ 220 (571)
+.+.++|||........ +...+.. +|.+++|+.+...-.......++.++..+.+. -+|+|++...
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 89999999975443322 2333333 37899999988766777888899999988875 5789998754
No 484
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=95.70 E-value=0.3 Score=48.87 Aligned_cols=85 Identities=12% Similarity=-0.073 Sum_probs=47.2
Q ss_pred cCeEEEEEcCCCCCCcHHHH-HHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccchhhhHHH
Q 008294 153 NKHRINIIDTPGHVDFTLEV-ERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDM 230 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~-~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~ 230 (571)
+.+.+.||||||........ ..++..+|.+|+++.+..---......++.+...+.+.. ++.|..+.. ...+.+++
T Consensus 112 ~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~~~--~~~~~~~~ 189 (264)
T PRK13231 112 EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRGID--NEVEIVSE 189 (264)
T ss_pred CCCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHHHHHHHHHHcCCcceEEEEcCCCCc--cHHHHHHH
Confidence 46789999999865321110 111258899999987753222223333444444444433 455655532 23456777
Q ss_pred HHHHhCCcc
Q 008294 231 IVTNLGAKP 239 (571)
Q Consensus 231 i~~~l~~~~ 239 (571)
+.+.++...
T Consensus 190 l~~~~~~~v 198 (264)
T PRK13231 190 FASRIGSRI 198 (264)
T ss_pred HHHHhCCCe
Confidence 777777543
No 485
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=95.65 E-value=0.12 Score=51.42 Aligned_cols=85 Identities=13% Similarity=0.013 Sum_probs=55.7
Q ss_pred cCeEEEEEcCCCCCCcHH-----HH----HHHHHh--cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCcc
Q 008294 153 NKHRINIIDTPGHVDFTL-----EV----ERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRL 220 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~-----~~----~~~l~~--~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~ 220 (571)
..+.+.++|||.-..... +. ...+.. .+.+++|+....-....+.+.+..+...++++ -+|+|++...
T Consensus 123 ~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~ 202 (254)
T cd00550 123 AEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPE 202 (254)
T ss_pred CCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCccc
Confidence 468999999998533211 11 111221 25788888877655567778889999999987 5789998753
Q ss_pred cc-----------chhhhHHHHHHHhCC
Q 008294 221 GA-----------NFFRTRDMIVTNLGA 237 (571)
Q Consensus 221 ~~-----------~~~~~~~~i~~~l~~ 237 (571)
.. .+.+.++++++.|+.
T Consensus 203 ~~~~~~~~~~~~~~q~~~l~~~~~~~~~ 230 (254)
T cd00550 203 DVTNCPFLEARREIQQKYLEEIEELFSD 230 (254)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22 134557777777654
No 486
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=95.64 E-value=0.094 Score=56.70 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.++|.|+|..++|||||+.+|.
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~ 46 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQ 46 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhh
Confidence 4799999999999999999984
No 487
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.61 E-value=0.042 Score=55.29 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHh
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+.|+|+|..|+|||||+.+|+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~ 24 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDR 24 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999743
No 488
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.59 E-value=0.049 Score=54.88 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=46.1
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHH------hcCeEEEEEeCCCCCchhHHHHH----HHHHhcCCCeE-EEEecCCccc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALR------VLDGAICLFDSVAGVEPQSETVW----RQADKYGVPRI-CFVNKMDRLG 221 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~------~~D~~ilVvda~~g~~~~~~~~~----~~~~~~~~p~i-vviNK~D~~~ 221 (571)
+.+.+.||||+|.. +..++. .||.+|+++.+..---.....++ +.....+++++ +|+|+...
T Consensus 117 ~~yD~iliD~~~~~-----~~~al~~~~~~~aad~viIp~~p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~-- 189 (275)
T PRK13233 117 DDLDFVFFDVLGDV-----VCGGFAMPIRDGKAQEVYIVASGEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRNV-- 189 (275)
T ss_pred CCCCEEEEecCCce-----eeccccccchhccCceEEEeccccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCC--
Confidence 46889999998743 222333 78999999977521111111222 22234466655 78897431
Q ss_pred cchhhhHHHHHHHhCCcc
Q 008294 222 ANFFRTRDMIVTNLGAKP 239 (571)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~ 239 (571)
....++++++.+.++...
T Consensus 190 ~~~~~~~e~l~~~~~~~~ 207 (275)
T PRK13233 190 DGELELLEEFTDAIGTQM 207 (275)
T ss_pred CcHHHHHHHHHHHcCCce
Confidence 122456788888877643
No 489
>CHL00189 infB translation initiation factor 2; Provisional
Probab=95.57 E-value=0.057 Score=61.45 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=62.9
Q ss_pred EEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCCCccccc
Q 008294 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITGE 468 (571)
Q Consensus 391 ~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~~Gd 468 (571)
.|.|-++|..+. |.++-|+|.+|+++.|..+++.+.+.....+.|..+. +...+|+++..|.-|+| .+..++..||
T Consensus 651 ~a~v~~vF~~~k-~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk-~~k~~v~ev~~g~ecgi~i~~~~d~~~gD 728 (742)
T CHL00189 651 EAEVKTVFPLAK-RFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLK-RVKEDVEEAQEGNECGIFIEEFQLWQSGD 728 (742)
T ss_pred eEEeeEEEecCC-CEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHh-hcCccccEeCCCCEEEEEeeCCCCCCcCC
Confidence 344556665566 8999999999999999999998887665556666665 44588999999999999 5677799999
Q ss_pred eec
Q 008294 469 TLC 471 (571)
Q Consensus 469 tl~ 471 (571)
+|-
T Consensus 729 ~ie 731 (742)
T CHL00189 729 KIH 731 (742)
T ss_pred EEE
Confidence 883
No 490
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.57 E-value=0.35 Score=47.59 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+.+.+.|++|+|||+|+.++.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999863
No 491
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.46 E-value=0.014 Score=44.37 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...|+|+.|+|||||++++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999963
No 492
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.44 E-value=0.17 Score=50.97 Aligned_cols=84 Identities=10% Similarity=-0.098 Sum_probs=45.5
Q ss_pred cCeEEEEEcCCCCCCcHH-HHHHHHHhcCeEEEEEeCCCCCchhH---HHHHHHHHh-cCCCeE-EEEecCCccccchhh
Q 008294 153 NKHRINIIDTPGHVDFTL-EVERALRVLDGAICLFDSVAGVEPQS---ETVWRQADK-YGVPRI-CFVNKMDRLGANFFR 226 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~-~~~~~l~~~D~~ilVvda~~g~~~~~---~~~~~~~~~-~~~p~i-vviNK~D~~~~~~~~ 226 (571)
+.+.+.||||||...... ....++..+|.+|+++.+..---... .+.+...+. .++.+. +++|+... ....+
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~--~~~~e 193 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMYAANNICKGILKYADAGGVRLGGLICNSRKV--DNERE 193 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCCC--CchHH
Confidence 458999999988542111 11223447899999997643111112 222233322 344443 67787531 12345
Q ss_pred hHHHHHHHhCCc
Q 008294 227 TRDMIVTNLGAK 238 (571)
Q Consensus 227 ~~~~i~~~l~~~ 238 (571)
.++++++.++..
T Consensus 194 ~~~~l~~~~~~~ 205 (274)
T PRK13235 194 MIEELARKIGTQ 205 (274)
T ss_pred HHHHHHHHcCCc
Confidence 677777777753
No 493
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.43 E-value=0.091 Score=52.92 Aligned_cols=44 Identities=23% Similarity=0.170 Sum_probs=32.3
Q ss_pred cCeEEEEEeCCCCCch--hHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 179 LDGAICLFDSVAGVEP--QSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 179 ~D~~ilVvda~~g~~~--~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.|-+++|+.+.++.-. ...+.+-.+...++..++++||+|+...
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~ 125 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDD 125 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcc
Confidence 5778888887764322 3335566677889999999999999764
No 494
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.36 E-value=0.03 Score=52.58 Aligned_cols=106 Identities=19% Similarity=0.151 Sum_probs=53.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC---c
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD---F 168 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~---f 168 (571)
+|.|+|++||||||+...|....+. ..++.| |+.......+..... ..-.++|-.+... .
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i----~hlstg----d~~r~~~~~~t~lg~---------~~k~~i~~g~lv~d~i~ 64 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL----PHLDTG----DILRAAIAERTELGE---------EIKKYIDKGELVPDEIV 64 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC----cEEcHh----HHhHhhhccCChHHH---------HHHHHHHcCCccchHHH
Confidence 6899999999999999999855332 111111 111111111100000 0001344444221 1
Q ss_pred HHHHHHHHHhcCeE-EEEEeCCCCCchhHHHHHHHHHhcCCCeEEEE
Q 008294 169 TLEVERALRVLDGA-ICLFDSVAGVEPQSETVWRQADKYGVPRICFV 214 (571)
Q Consensus 169 ~~~~~~~l~~~D~~-ilVvda~~g~~~~~~~~~~~~~~~~~p~ivvi 214 (571)
...+...+..+|+. .+++|.--....|.+.+-+.+..++.+.-.++
T Consensus 65 ~~~v~~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~ 111 (178)
T COG0563 65 NGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVI 111 (178)
T ss_pred HHHHHHHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEE
Confidence 23445556666633 46677655556666666666666665544443
No 495
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=95.19 E-value=0.17 Score=48.65 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=37.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEe
Q 008294 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVN 215 (571)
Q Consensus 156 ~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviN 215 (571)
.+.|||||..... ......+..+|.+|+|+.+..--.....+.+..++ +.+++ +|+|
T Consensus 150 D~IiiD~pp~~~~-~~~~~l~~~aD~viiV~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 150 RIIIIDTPPLLVF-SEARALARLVGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred CEEEEECCCCcch-hHHHHHHHhCCEEEEEEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 6899999876652 23444456789999999887655555666666666 44554 3444
No 496
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.16 E-value=0.14 Score=44.56 Aligned_cols=25 Identities=28% Similarity=0.206 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.++.++|++|+||||++..++...+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 5789999999999999999985443
No 497
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=95.12 E-value=0.61 Score=41.51 Aligned_cols=80 Identities=14% Similarity=0.033 Sum_probs=50.3
Q ss_pred eEEEEEcCCCCCC-------cHHHHHHHHHhcCe-EEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccchh
Q 008294 155 HRINIIDTPGHVD-------FTLEVERALRVLDG-AICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFF 225 (571)
Q Consensus 155 ~~i~liDTPG~~~-------f~~~~~~~l~~~D~-~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~~ 225 (571)
+.+.+|+.+|... ...++.+.+ +. +++|.+...+.-.+.....+.++..++++. ++.|..+.......
T Consensus 39 ~d~vliEGaGg~~~p~~~~~~~~d~~~~~---~~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~ 115 (134)
T cd03109 39 YDFVLVEGAGGLCVPLKEDFTNADVAKEL---NLPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLAT 115 (134)
T ss_pred CCEEEEECCCccccCCCCCCCHHHHHHHh---CCCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhh
Confidence 6889999997422 233333333 33 677777777655556667778888888875 66798875432222
Q ss_pred hhHHHHHHHhCC
Q 008294 226 RTRDMIVTNLGA 237 (571)
Q Consensus 226 ~~~~~i~~~l~~ 237 (571)
..++.+.+.++.
T Consensus 116 ~~~~~i~~~~gi 127 (134)
T cd03109 116 LNVETIERLTGI 127 (134)
T ss_pred hhHHHHHHhcCC
Confidence 346666776665
No 498
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.11 E-value=0.02 Score=49.70 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=20.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.|+|.|.+|+||||+++.|....|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 488999999999999999985544
No 499
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.09 E-value=0.37 Score=46.75 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
....+.+.|.+|+|||+|+.++..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~ 60 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACA 60 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999973
No 500
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.02 E-value=0.14 Score=46.99 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.+.++|+|..|+|||||+++|+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv 23 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLV 23 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHH
Confidence 3578999999999999999997
Done!