Query 008294
Match_columns 571
No_of_seqs 394 out of 2927
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 22:48:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fn5_A EF-G 1, elongation fact 100.0 1.1E-94 3.6E-99 817.2 47.7 485 85-569 8-499 (709)
2 2rdo_7 EF-G, elongation factor 100.0 1.3E-88 4.5E-93 764.2 57.2 484 86-569 6-496 (704)
3 2xex_A Elongation factor G; GT 100.0 9.9E-87 3.4E-91 748.4 51.0 483 85-569 5-488 (693)
4 3vqt_A RF-3, peptide chain rel 100.0 2.2E-88 7.7E-93 741.4 36.6 458 88-569 29-499 (548)
5 1dar_A EF-G, elongation factor 100.0 2.3E-86 8E-91 745.2 41.9 481 86-569 8-489 (691)
6 2dy1_A Elongation factor G; tr 100.0 2.3E-78 7.8E-83 678.2 51.3 455 87-569 6-462 (665)
7 3j25_A Tetracycline resistance 100.0 6.2E-83 2.1E-87 712.0 10.7 425 89-569 1-425 (638)
8 3tr5_A RF-3, peptide chain rel 100.0 7.4E-78 2.5E-82 654.9 37.6 458 88-569 11-475 (528)
9 2h5e_A Peptide chain release f 100.0 1.4E-76 4.9E-81 645.5 37.7 458 88-569 11-476 (529)
10 1n0u_A EF-2, elongation factor 100.0 3.1E-75 1E-79 667.4 32.0 468 87-570 16-570 (842)
11 2ywe_A GTP-binding protein LEP 100.0 1.1E-63 3.9E-68 547.4 40.6 361 87-568 3-379 (600)
12 3cb4_D GTP-binding protein LEP 100.0 2.5E-62 8.4E-67 538.1 39.1 361 88-569 2-378 (599)
13 1g7s_A Translation initiation 100.0 2.5E-39 8.7E-44 355.9 16.6 332 89-511 4-373 (594)
14 3j2k_7 ERF3, eukaryotic polype 100.0 6.9E-36 2.4E-40 319.4 30.0 279 86-477 13-330 (439)
15 2c78_A Elongation factor TU-A; 100.0 4.4E-36 1.5E-40 318.4 27.3 273 88-475 9-309 (405)
16 1d2e_A Elongation factor TU (E 100.0 2.3E-36 7.8E-41 319.6 22.2 272 89-475 2-291 (397)
17 1jny_A EF-1-alpha, elongation 100.0 4.6E-36 1.6E-40 320.9 23.1 278 88-476 4-319 (435)
18 3mca_A HBS1, elongation factor 100.0 2E-35 6.9E-40 326.0 16.9 276 86-476 173-491 (592)
19 3p26_A Elongation factor 1 alp 100.0 1.3E-33 4.6E-38 305.7 28.5 281 88-475 31-363 (483)
20 2elf_A Protein translation elo 100.0 1.4E-34 4.6E-39 302.1 19.2 242 91-472 22-275 (370)
21 1r5b_A Eukaryotic peptide chai 100.0 3.3E-34 1.1E-38 308.8 20.0 277 88-476 41-358 (467)
22 3avx_A Elongation factor TS, e 100.0 7E-34 2.4E-38 323.9 23.6 276 86-476 292-583 (1289)
23 1zun_B Sulfate adenylate trans 100.0 4.2E-33 1.4E-37 297.9 27.8 278 87-476 21-328 (434)
24 1kk1_A EIF2gamma; initiation o 100.0 2.8E-33 9.7E-38 297.3 26.2 259 87-476 7-318 (410)
25 1f60_A Elongation factor EEF1A 100.0 2.6E-33 8.8E-38 301.1 25.2 272 89-475 6-329 (458)
26 3izq_1 HBS1P, elongation facto 100.0 2.3E-33 7.9E-38 310.4 21.7 287 87-475 164-497 (611)
27 1s0u_A EIF-2-gamma, translatio 100.0 5.5E-32 1.9E-36 287.1 26.0 258 88-476 6-316 (408)
28 3sjy_A Translation initiation 100.0 1.1E-31 3.8E-36 284.3 24.3 270 88-476 6-310 (403)
29 1wb1_A Translation elongation 100.0 1.5E-32 5.1E-37 296.6 15.7 263 88-474 17-285 (482)
30 1zo1_I IF2, translation initia 100.0 7.3E-34 2.5E-38 305.2 5.1 303 88-521 2-334 (501)
31 3izy_P Translation initiation 100.0 8.4E-33 2.9E-37 299.3 8.0 257 89-476 3-261 (537)
32 3e3x_A BIPA; MCSG,PSI2, struct 99.9 1.5E-22 5E-27 203.2 11.6 109 457-566 2-119 (332)
33 3iev_A GTP-binding protein ERA 99.8 1.5E-19 5.2E-24 184.2 19.4 117 87-220 7-135 (308)
34 1wf3_A GTP-binding protein; GT 99.8 8.8E-20 3E-24 185.1 16.8 117 89-222 6-132 (301)
35 3qq5_A Small GTP-binding prote 99.8 3E-20 1E-24 196.2 10.8 119 86-223 30-156 (423)
36 2dyk_A GTP-binding protein; GT 99.8 3.1E-19 1.1E-23 162.7 16.0 116 90-222 1-123 (161)
37 3iby_A Ferrous iron transport 99.8 3.5E-19 1.2E-23 176.6 14.8 111 91-221 2-124 (256)
38 2lkc_A Translation initiation 99.8 1.2E-19 4E-24 168.6 10.5 118 88-223 6-123 (178)
39 4dhe_A Probable GTP-binding pr 99.8 2.1E-19 7.3E-24 173.6 12.6 122 85-222 24-159 (223)
40 1zj6_A ADP-ribosylation factor 99.8 1.2E-18 4.1E-23 163.7 16.8 113 88-221 14-131 (187)
41 1upt_A ARL1, ADP-ribosylation 99.8 8.4E-19 2.9E-23 161.5 14.6 114 88-222 5-123 (171)
42 1r8s_A ADP-ribosylation factor 99.8 3.4E-18 1.2E-22 156.5 18.3 109 92-221 2-115 (164)
43 1svi_A GTP-binding protein YSX 99.8 1.9E-18 6.4E-23 163.2 16.5 119 85-222 18-149 (195)
44 2xtp_A GTPase IMAP family memb 99.8 2.9E-20 9.8E-25 184.8 3.8 203 87-312 19-256 (260)
45 3i8s_A Ferrous iron transport 99.8 7.7E-19 2.6E-23 175.9 13.9 112 90-221 3-126 (274)
46 1ega_A Protein (GTP-binding pr 99.8 5.4E-19 1.8E-23 179.4 12.5 115 89-221 7-130 (301)
47 1zd9_A ADP-ribosylation factor 99.8 3.7E-18 1.3E-22 160.6 17.3 115 88-222 20-139 (188)
48 2hjg_A GTP-binding protein ENG 99.8 6.6E-19 2.3E-23 188.1 13.5 118 88-222 173-301 (436)
49 4bas_A ADP-ribosylation factor 99.8 1.2E-18 4.3E-23 164.8 13.7 118 86-222 13-142 (199)
50 2b6h_A ADP-ribosylation factor 99.8 6.5E-18 2.2E-22 159.8 18.6 114 88-222 27-145 (192)
51 2h57_A ADP-ribosylation factor 99.8 1.7E-18 5.8E-23 163.1 14.0 115 88-221 19-140 (190)
52 1fzq_A ADP-ribosylation factor 99.8 1.1E-17 3.9E-22 156.5 19.4 114 88-222 14-132 (181)
53 2efe_B Small GTP-binding prote 99.8 3.7E-18 1.3E-22 158.8 15.6 118 88-221 10-131 (181)
54 2h17_A ADP-ribosylation factor 99.8 3E-18 1E-22 160.2 14.8 115 86-221 17-136 (181)
55 2fg5_A RAB-22B, RAS-related pr 99.8 4.1E-18 1.4E-22 160.9 15.6 118 88-221 21-142 (192)
56 3a1s_A Iron(II) transport prot 99.8 3.9E-18 1.3E-22 169.2 16.0 113 89-221 4-124 (258)
57 4dcu_A GTP-binding protein ENG 99.8 2.5E-18 8.5E-23 184.7 15.4 119 87-222 192-321 (456)
58 1z0f_A RAB14, member RAS oncog 99.8 5.2E-18 1.8E-22 157.2 15.6 119 87-221 12-134 (179)
59 1r2q_A RAS-related protein RAB 99.8 5.9E-18 2E-22 155.4 15.7 116 90-221 6-125 (170)
60 2wji_A Ferrous iron transport 99.8 9.2E-18 3.1E-22 154.6 17.0 112 90-221 3-122 (165)
61 2hxs_A RAB-26, RAS-related pro 99.8 9E-18 3.1E-22 155.8 17.0 116 88-221 4-129 (178)
62 3k53_A Ferrous iron transport 99.8 3.1E-18 1E-22 171.3 14.8 112 90-221 3-123 (271)
63 3t1o_A Gliding protein MGLA; G 99.8 1.3E-18 4.4E-23 164.1 11.4 128 88-221 12-149 (198)
64 1mky_A Probable GTP-binding pr 99.8 3.6E-18 1.2E-22 182.6 15.8 113 91-220 2-123 (439)
65 2p5s_A RAS and EF-hand domain 99.8 6.1E-18 2.1E-22 160.6 15.7 119 87-221 25-147 (199)
66 1z0j_A RAB-22, RAS-related pro 99.8 6.8E-18 2.3E-22 155.1 15.3 117 89-221 5-125 (170)
67 2il1_A RAB12; G-protein, GDP, 99.8 5.2E-18 1.8E-22 160.3 14.8 120 86-221 22-145 (192)
68 1ek0_A Protein (GTP-binding pr 99.8 8.2E-18 2.8E-22 154.4 15.7 117 90-222 3-123 (170)
69 1zbd_A Rabphilin-3A; G protein 99.8 6.2E-18 2.1E-22 160.9 15.0 118 88-221 6-127 (203)
70 2gf9_A RAS-related protein RAB 99.8 2.8E-18 9.5E-23 161.5 12.4 119 87-221 19-141 (189)
71 3pqc_A Probable GTP-binding pr 99.8 9.8E-18 3.4E-22 157.8 16.1 117 86-222 19-148 (195)
72 1m2o_B GTP-binding protein SAR 99.8 7.4E-18 2.5E-22 159.1 14.8 111 90-221 23-138 (190)
73 2hup_A RAS-related protein RAB 99.8 1.5E-17 5.1E-22 158.4 16.8 118 86-221 25-148 (201)
74 3tkl_A RAS-related protein RAB 99.8 7.1E-18 2.4E-22 159.1 14.3 117 88-222 14-136 (196)
75 3dz8_A RAS-related protein RAB 99.8 4.3E-18 1.5E-22 160.5 12.8 118 88-221 21-142 (191)
76 1kao_A RAP2A; GTP-binding prot 99.8 9.6E-18 3.3E-22 153.3 14.5 115 90-221 3-122 (167)
77 2erx_A GTP-binding protein DI- 99.8 2.4E-17 8.3E-22 151.5 17.2 115 90-221 3-123 (172)
78 4dsu_A GTPase KRAS, isoform 2B 99.8 1.2E-17 4.3E-22 156.2 15.4 116 89-221 3-123 (189)
79 2oil_A CATX-8, RAS-related pro 99.8 9.8E-18 3.4E-22 158.1 14.8 120 86-221 21-144 (193)
80 1c1y_A RAS-related protein RAP 99.8 2.7E-17 9.3E-22 150.6 17.3 115 90-221 3-122 (167)
81 3kkq_A RAS-related protein M-R 99.7 1.2E-17 4E-22 156.0 15.1 118 87-221 15-137 (183)
82 2fn4_A P23, RAS-related protei 99.7 1.3E-17 4.4E-22 154.8 15.2 117 86-221 5-128 (181)
83 1ksh_A ARF-like protein 2; sma 99.7 5E-18 1.7E-22 159.1 12.3 114 88-222 16-134 (186)
84 1f6b_A SAR1; gtpases, N-termin 99.7 8.9E-18 3E-22 159.7 14.2 112 89-221 24-140 (198)
85 3bc1_A RAS-related protein RAB 99.7 1.5E-17 5.1E-22 156.2 15.2 118 87-221 8-141 (195)
86 2gj8_A MNME, tRNA modification 99.7 1.5E-17 5E-22 154.5 14.9 114 90-220 4-128 (172)
87 3tw8_B RAS-related protein RAB 99.7 4E-18 1.4E-22 158.3 11.0 118 87-222 6-128 (181)
88 1moz_A ARL1, ADP-ribosylation 99.7 3.3E-18 1.1E-22 159.6 10.4 113 88-221 16-133 (183)
89 2x77_A ADP-ribosylation factor 99.7 2.7E-18 9.1E-23 161.5 9.7 114 88-222 20-138 (189)
90 1z06_A RAS-related protein RAB 99.7 9.9E-18 3.4E-22 157.7 13.7 119 87-221 17-141 (189)
91 3b1v_A Ferrous iron uptake tra 99.7 7.8E-18 2.7E-22 168.1 13.7 111 90-221 3-121 (272)
92 1u8z_A RAS-related protein RAL 99.7 3.5E-17 1.2E-21 149.6 16.8 115 90-221 4-123 (168)
93 1z2a_A RAS-related protein RAB 99.7 1E-17 3.4E-22 153.6 12.8 117 89-221 4-123 (168)
94 2y8e_A RAB-protein 6, GH09086P 99.7 1.9E-17 6.3E-22 153.5 14.7 114 90-221 14-133 (179)
95 1wms_A RAB-9, RAB9, RAS-relate 99.7 2.6E-17 8.7E-22 152.5 15.6 115 88-220 5-129 (177)
96 2bme_A RAB4A, RAS-related prot 99.7 1.3E-17 4.3E-22 156.1 13.5 116 88-221 8-129 (186)
97 2f7s_A C25KG, RAS-related prot 99.7 1.3E-17 4.3E-22 160.6 13.8 120 86-221 21-155 (217)
98 2g6b_A RAS-related protein RAB 99.7 1.6E-17 5.5E-22 154.4 14.0 119 88-221 8-130 (180)
99 2hjg_A GTP-binding protein ENG 99.7 4.6E-18 1.6E-22 181.6 11.6 114 91-221 4-125 (436)
100 1z08_A RAS-related protein RAB 99.7 8.6E-18 2.9E-22 154.6 11.9 118 88-221 4-125 (170)
101 3llu_A RAS-related GTP-binding 99.7 3.8E-17 1.3E-21 154.8 16.6 119 85-222 15-144 (196)
102 1g16_A RAS-related protein SEC 99.7 8.4E-18 2.9E-22 154.5 11.7 114 89-220 2-121 (170)
103 2bov_A RAla, RAS-related prote 99.7 7.5E-17 2.6E-21 153.3 18.7 117 86-221 10-133 (206)
104 2a5j_A RAS-related protein RAB 99.7 1.3E-17 4.5E-22 157.2 13.2 118 88-221 19-140 (191)
105 2fu5_C RAS-related protein RAB 99.7 8.5E-18 2.9E-22 156.9 11.6 116 88-221 6-127 (183)
106 2wjg_A FEOB, ferrous iron tran 99.7 5.5E-17 1.9E-21 152.1 17.1 113 89-221 6-126 (188)
107 2nzj_A GTP-binding protein REM 99.7 2.1E-17 7E-22 152.8 13.9 116 89-221 3-125 (175)
108 1x3s_A RAS-related protein RAB 99.7 1.5E-17 5.1E-22 156.6 13.3 116 89-220 14-134 (195)
109 3t5g_A GTP-binding protein RHE 99.7 4.5E-18 1.5E-22 158.5 9.3 117 88-221 4-125 (181)
110 3gj0_A GTP-binding nuclear pro 99.7 3.3E-18 1.1E-22 165.3 8.6 121 86-222 11-134 (221)
111 1ky3_A GTP-binding protein YPT 99.7 2.2E-17 7.4E-22 153.5 13.8 116 88-221 6-132 (182)
112 1mh1_A RAC1; GTP-binding, GTPa 99.7 3E-17 1E-21 153.3 14.6 117 89-222 4-124 (186)
113 2ce2_X GTPase HRAS; signaling 99.7 7.1E-17 2.4E-21 147.1 16.8 114 91-221 4-122 (166)
114 2a9k_A RAS-related protein RAL 99.7 9.8E-17 3.4E-21 149.7 18.1 114 89-221 17-137 (187)
115 3q85_A GTP-binding protein REM 99.7 2.7E-17 9.2E-22 151.2 14.0 116 90-221 2-123 (169)
116 2ew1_A RAS-related protein RAB 99.7 2.1E-17 7.3E-22 157.6 13.6 117 87-221 23-145 (201)
117 3clv_A RAB5 protein, putative; 99.7 6.1E-17 2.1E-21 153.1 16.5 64 155-218 93-158 (208)
118 3q72_A GTP-binding protein RAD 99.7 3.7E-17 1.3E-21 149.8 14.2 114 90-221 2-120 (166)
119 3o47_A ADP-ribosylation factor 99.7 2.4E-17 8.4E-22 169.3 14.3 112 90-222 165-281 (329)
120 4dkx_A RAS-related protein RAB 99.7 4.5E-17 1.5E-21 157.1 15.1 116 90-221 13-132 (216)
121 3cph_A RAS-related protein SEC 99.7 2.6E-17 8.8E-22 157.6 13.4 116 87-220 17-138 (213)
122 2bcg_Y Protein YP2, GTP-bindin 99.7 2E-17 7E-22 157.7 12.6 116 88-221 6-127 (206)
123 2gf0_A GTP-binding protein DI- 99.7 7.8E-17 2.7E-21 152.4 16.4 116 89-221 7-128 (199)
124 2atx_A Small GTP binding prote 99.7 2.2E-17 7.6E-22 155.8 12.4 116 88-222 16-137 (194)
125 3oes_A GTPase rhebl1; small GT 99.7 1.5E-17 5.1E-22 158.2 11.1 120 85-221 19-143 (201)
126 2fh5_B SR-beta, signal recogni 99.7 5.6E-17 1.9E-21 155.6 15.2 126 89-236 6-145 (214)
127 1vg8_A RAS-related protein RAB 99.7 1.7E-17 5.7E-22 158.1 11.1 117 88-220 6-130 (207)
128 3bwd_D RAC-like GTP-binding pr 99.7 1.1E-17 3.8E-22 155.7 9.6 117 89-222 7-127 (182)
129 2qu8_A Putative nucleolar GTP- 99.7 3.1E-16 1E-20 152.4 20.2 116 88-221 27-156 (228)
130 1mky_A Probable GTP-binding pr 99.7 1.6E-16 5.4E-21 169.8 18.6 118 88-222 178-307 (439)
131 4gzl_A RAS-related C3 botulinu 99.7 3.3E-17 1.1E-21 156.4 12.0 116 88-222 28-149 (204)
132 2o52_A RAS-related protein RAB 99.7 3.4E-17 1.2E-21 155.7 11.8 117 87-221 22-144 (200)
133 3con_A GTPase NRAS; structural 99.7 1.3E-16 4.4E-21 149.9 15.4 113 90-221 21-140 (190)
134 4dcu_A GTP-binding protein ENG 99.7 2.6E-17 9E-22 176.7 11.8 114 90-220 23-144 (456)
135 3cpj_B GTP-binding protein YPT 99.7 4.4E-17 1.5E-21 157.7 11.9 116 88-221 11-132 (223)
136 2atv_A RERG, RAS-like estrogen 99.7 3.1E-16 1E-20 148.4 17.2 116 88-221 26-146 (196)
137 2j0v_A RAC-like GTP-binding pr 99.7 5.5E-17 1.9E-21 155.4 11.9 118 88-222 7-128 (212)
138 3lvq_E ARF-GAP with SH3 domain 99.7 1.1E-16 3.6E-21 174.0 15.2 114 88-222 320-438 (497)
139 3reg_A RHO-like small GTPase; 99.7 8.3E-17 2.9E-21 151.9 12.6 117 88-221 21-141 (194)
140 3lxw_A GTPase IMAP family memb 99.7 1.1E-16 3.8E-21 157.7 13.4 118 89-223 20-155 (247)
141 4djt_A GTP-binding nuclear pro 99.7 2.2E-17 7.7E-22 158.9 8.0 118 88-221 9-131 (218)
142 2j1l_A RHO-related GTP-binding 99.7 4.3E-16 1.5E-20 149.8 16.7 118 88-222 32-153 (214)
143 3cbq_A GTP-binding protein REM 99.7 2.6E-16 9E-21 149.1 14.8 119 87-221 20-144 (195)
144 3gee_A MNME, tRNA modification 99.7 7.3E-17 2.5E-21 173.1 12.1 114 90-222 233-358 (476)
145 2q3h_A RAS homolog gene family 99.7 7.3E-17 2.5E-21 153.1 10.8 116 88-222 18-139 (201)
146 3ihw_A Centg3; RAS, centaurin, 99.7 5E-16 1.7E-20 145.7 16.3 109 87-220 17-132 (184)
147 3l0i_B RAS-related protein RAB 99.7 4.5E-18 1.6E-22 161.6 1.6 116 88-221 31-152 (199)
148 2fv8_A H6, RHO-related GTP-bin 99.7 2.2E-16 7.7E-21 150.8 13.1 116 90-222 25-144 (207)
149 1xzp_A Probable tRNA modificat 99.7 3.1E-16 1.1E-20 168.4 15.5 112 91-221 244-364 (482)
150 3c5c_A RAS-like protein 12; GD 99.7 3.3E-16 1.1E-20 147.3 13.7 116 88-221 19-141 (187)
151 3q3j_B RHO-related GTP-binding 99.7 1.3E-16 4.3E-21 153.6 11.0 118 88-222 25-146 (214)
152 3t5d_A Septin-7; GTP-binding p 99.7 2.6E-16 8.8E-21 157.6 13.4 201 90-310 8-267 (274)
153 2gco_A H9, RHO-related GTP-bin 99.7 2.8E-16 9.7E-21 149.4 13.0 117 89-222 24-144 (201)
154 2yc2_C IFT27, small RAB-relate 99.7 5.9E-17 2E-21 154.2 7.1 118 88-221 18-146 (208)
155 2cxx_A Probable GTP-binding pr 99.7 4E-16 1.4E-20 146.2 12.0 122 91-235 2-149 (190)
156 2iwr_A Centaurin gamma 1; ANK 99.7 1.7E-15 5.8E-20 140.5 15.8 109 89-220 6-121 (178)
157 1m7b_A RND3/RHOE small GTP-bin 99.6 2.8E-16 9.6E-21 147.1 10.0 117 88-221 5-125 (184)
158 3geh_A MNME, tRNA modification 99.6 2E-16 7E-21 169.1 8.4 114 90-222 224-345 (462)
159 2p67_A LAO/AO transport system 99.6 1.1E-16 3.7E-21 165.3 5.3 240 87-357 53-329 (341)
160 1gwn_A RHO-related GTP-binding 99.6 5.5E-16 1.9E-20 148.2 9.5 117 88-221 26-146 (205)
161 3lxx_A GTPase IMAP family memb 99.6 1.5E-16 5.1E-21 155.8 5.6 144 85-245 24-191 (239)
162 3r7w_A Gtpase1, GTP-binding pr 99.6 3.6E-15 1.2E-19 151.7 15.7 116 90-222 3-130 (307)
163 1lnz_A SPO0B-associated GTP-bi 99.6 1.4E-15 4.8E-20 156.4 11.6 114 90-221 158-288 (342)
164 1jwy_B Dynamin A GTPase domain 99.6 1.7E-15 5.9E-20 154.4 11.5 70 153-222 129-213 (315)
165 3th5_A RAS-related C3 botulinu 99.4 5.2E-17 1.8E-21 154.7 0.0 118 88-222 28-149 (204)
166 2aka_B Dynamin-1; fusion prote 99.6 2.8E-15 9.5E-20 151.6 12.5 136 87-222 23-207 (299)
167 2g3y_A GTP-binding protein GEM 99.6 5E-15 1.7E-19 142.2 13.3 119 88-221 35-159 (211)
168 2wkq_A NPH1-1, RAS-related C3 99.6 4.4E-15 1.5E-19 152.1 13.6 116 88-222 153-274 (332)
169 2e87_A Hypothetical protein PH 99.6 2.6E-14 8.9E-19 148.5 17.6 117 88-222 165-295 (357)
170 2zej_A Dardarin, leucine-rich 99.6 2.9E-15 9.8E-20 140.3 7.9 118 91-222 3-127 (184)
171 2cjw_A GTP-binding protein GEM 99.6 3.4E-14 1.2E-18 134.2 14.7 118 89-221 5-128 (192)
172 2qtf_A Protein HFLX, GTP-bindi 99.6 4.1E-14 1.4E-18 146.9 16.0 116 89-222 178-307 (364)
173 1nrj_B SR-beta, signal recogni 99.6 3.3E-14 1.1E-18 136.5 14.0 114 88-223 10-136 (218)
174 3dpu_A RAB family protein; roc 99.5 2.7E-14 9.1E-19 156.4 13.2 117 87-221 38-164 (535)
175 2f9l_A RAB11B, member RAS onco 99.5 7.7E-14 2.6E-18 132.2 13.1 115 89-221 4-124 (199)
176 3p32_A Probable GTPase RV1496/ 99.5 5.3E-14 1.8E-18 145.9 12.5 128 88-222 77-232 (355)
177 2j69_A Bacterial dynamin-like 99.5 1.4E-13 4.7E-18 154.7 16.5 68 155-222 174-245 (695)
178 1pui_A ENGB, probable GTP-bind 99.5 1.6E-13 5.4E-18 130.9 13.7 118 86-222 22-152 (210)
179 3def_A T7I23.11 protein; chlor 99.5 1.1E-13 3.7E-18 137.5 11.6 116 89-221 35-165 (262)
180 1h65_A Chloroplast outer envel 99.5 4.9E-13 1.7E-17 133.3 15.0 118 88-222 37-169 (270)
181 1oix_A RAS-related protein RAB 99.5 3.9E-13 1.3E-17 126.7 13.3 117 87-221 26-148 (191)
182 2wsm_A Hydrogenase expression/ 99.5 1.7E-13 6E-18 131.9 10.1 124 89-221 29-168 (221)
183 2ged_A SR-beta, signal recogni 99.4 1.1E-13 3.8E-18 130.1 7.9 126 88-235 46-185 (193)
184 3r7w_B Gtpase2, GTP-binding pr 99.4 8.5E-13 2.9E-17 133.6 14.4 112 92-222 1-121 (331)
185 2x2e_A Dynamin-1; nitration, h 99.4 1.9E-13 6.3E-18 141.8 9.3 134 89-222 30-212 (353)
186 2qag_A Septin-2, protein NEDD5 99.4 4.5E-13 1.5E-17 139.1 12.1 123 90-222 37-189 (361)
187 2qpt_A EH domain-containing pr 99.4 4E-13 1.4E-17 146.9 11.1 144 88-232 63-244 (550)
188 3c5h_A Glucocorticoid receptor 99.4 2.9E-13 9.8E-18 133.8 8.8 44 178-221 162-212 (255)
189 1wxq_A GTP-binding protein; st 99.4 1.1E-13 3.8E-18 145.2 4.5 82 92-191 2-114 (397)
190 3zvr_A Dynamin-1; hydrolase, D 99.4 9.4E-13 3.2E-17 147.1 11.6 134 89-222 50-232 (772)
191 1udx_A The GTP-binding protein 99.4 4.5E-12 1.5E-16 133.4 14.7 113 90-221 157-283 (416)
192 4a9a_A Ribosome-interacting GT 99.3 1.4E-11 4.9E-16 127.5 16.9 114 89-221 71-196 (376)
193 2www_A Methylmalonic aciduria 99.3 7.3E-12 2.5E-16 129.4 14.3 63 152-221 164-226 (349)
194 1yrb_A ATP(GTP)binding protein 99.3 5.4E-12 1.8E-16 124.7 9.7 133 88-222 12-186 (262)
195 3t34_A Dynamin-related protein 99.3 2E-11 6.9E-16 126.8 12.5 69 154-222 135-218 (360)
196 2j37_W Signal recognition part 99.2 5.8E-12 2E-16 135.3 6.4 217 88-333 99-344 (504)
197 1jal_A YCHF protein; nucleotid 99.1 5.9E-10 2E-14 114.8 12.9 82 91-190 3-108 (363)
198 2qnr_A Septin-2, protein NEDD5 99.1 5E-10 1.7E-14 113.2 11.9 122 90-221 18-169 (301)
199 2qm8_A GTPase/ATPase; G protei 99.1 4.7E-10 1.6E-14 115.2 10.7 123 88-220 53-206 (337)
200 2qag_C Septin-7; cell cycle, c 99.0 1.9E-09 6.6E-14 113.4 13.2 118 90-221 31-181 (418)
201 2dby_A GTP-binding protein; GD 99.0 7.6E-09 2.6E-13 107.1 17.5 82 91-190 2-111 (368)
202 2hf9_A Probable hydrogenase ni 99.0 1.4E-09 4.7E-14 104.7 11.0 124 89-221 37-178 (226)
203 2xxa_A Signal recognition part 99.0 5.7E-09 2E-13 110.4 16.4 217 88-334 98-347 (433)
204 3kl4_A SRP54, signal recogniti 98.9 4.1E-08 1.4E-12 103.4 17.3 215 89-333 96-345 (433)
205 2qag_B Septin-6, protein NEDD5 98.8 1.5E-08 5.1E-13 106.3 12.5 138 86-238 38-208 (427)
206 3ec1_A YQEH GTPase; atnos1, at 98.8 1.1E-09 3.8E-14 113.8 1.3 130 91-237 163-305 (369)
207 3e1y_E Eukaryotic peptide chai 98.8 1.3E-08 4.5E-13 96.6 8.5 85 386-476 3-91 (204)
208 3h2y_A GTPase family protein; 98.8 1.7E-09 5.9E-14 112.3 2.1 132 91-237 161-304 (368)
209 3sop_A Neuronal-specific septi 98.7 6.1E-08 2.1E-12 96.2 10.3 136 91-235 3-169 (270)
210 1tq4_A IIGP1, interferon-induc 98.7 3.5E-07 1.2E-11 95.9 16.1 113 90-220 69-188 (413)
211 1cip_A Protein (guanine nucleo 98.6 2E-08 6.9E-13 103.4 5.3 81 141-221 179-274 (353)
212 2v3c_C SRP54, signal recogniti 98.6 5.2E-08 1.8E-12 103.0 8.5 145 89-238 98-267 (432)
213 2ohf_A Protein OLA1, GTP-bindi 98.6 4.8E-08 1.6E-12 101.5 7.7 84 89-190 21-128 (396)
214 3dm5_A SRP54, signal recogniti 98.6 3.2E-06 1.1E-10 89.0 21.0 145 89-237 99-267 (443)
215 1zcb_A G alpha I/13; GTP-bindi 98.5 4.6E-08 1.6E-12 101.0 5.3 80 142-221 188-282 (362)
216 1u0l_A Probable GTPase ENGC; p 98.4 2.6E-07 8.9E-12 93.2 6.5 64 156-221 64-129 (301)
217 3ohm_A Guanine nucleotide-bind 98.3 2.9E-07 9.8E-12 93.5 5.2 84 139-222 151-249 (327)
218 4fid_A G protein alpha subunit 98.3 2.9E-07 1E-11 93.8 5.3 83 139-221 145-242 (340)
219 3l82_B F-box only protein 4; T 98.3 2E-06 6.8E-11 80.7 9.9 67 156-222 97-178 (227)
220 1azs_C GS-alpha; complex (lyas 98.3 9E-07 3.1E-11 92.2 8.1 80 142-221 204-298 (402)
221 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 1.5E-06 5.2E-11 90.4 9.5 85 89-190 19-127 (392)
222 1j8m_F SRP54, signal recogniti 98.2 2.5E-06 8.7E-11 85.6 9.0 143 90-237 98-267 (297)
223 4dzz_A Plasmid partitioning pr 98.2 1.3E-05 4.4E-10 75.4 13.0 143 91-238 2-160 (206)
224 2xtz_A Guanine nucleotide-bind 98.2 9.6E-07 3.3E-11 90.8 5.5 69 153-221 181-264 (354)
225 1puj_A YLQF, conserved hypothe 98.2 2.9E-06 9.8E-11 84.6 7.7 61 159-221 3-64 (282)
226 1f5n_A Interferon-induced guan 98.2 1.5E-06 5E-11 95.0 5.8 103 87-204 35-146 (592)
227 3l2o_B F-box only protein 4; s 98.1 1.5E-05 5.1E-10 78.4 11.1 60 163-222 195-263 (312)
228 2yv5_A YJEQ protein; hydrolase 97.9 6.9E-06 2.4E-10 82.7 5.5 57 165-221 66-124 (302)
229 3ec1_A YQEH GTPase; atnos1, at 97.9 1.8E-05 6.2E-10 82.0 8.6 63 157-222 51-113 (369)
230 1zu4_A FTSY; GTPase, signal re 97.9 8.6E-05 2.9E-09 75.2 12.3 146 88-238 103-283 (320)
231 2yhs_A FTSY, cell division pro 97.9 8.6E-05 3E-09 78.9 12.5 142 89-237 292-466 (503)
232 1puj_A YLQF, conserved hypothe 97.8 1.6E-05 5.4E-10 79.2 6.2 60 88-167 118-177 (282)
233 3cwq_A Para family chromosome 97.8 0.00012 4.2E-09 69.3 12.1 140 92-238 2-151 (209)
234 3e70_C DPA, signal recognition 97.8 4.6E-05 1.6E-09 77.4 8.5 141 88-237 127-296 (328)
235 3szr_A Interferon-induced GTP- 97.8 6.7E-05 2.3E-09 82.8 10.0 69 154-222 146-229 (608)
236 2ph1_A Nucleotide-binding prot 97.7 0.00043 1.5E-08 67.9 14.7 86 153-238 127-221 (262)
237 3h2y_A GTPase family protein; 97.7 3.5E-05 1.2E-09 79.7 6.7 54 165-222 56-111 (368)
238 3cnl_A YLQF, putative uncharac 97.7 1.7E-05 5.7E-10 78.2 3.5 55 163-221 5-60 (262)
239 1xe1_A Hypothetical protein PF 97.7 0.00022 7.7E-09 59.7 9.7 77 387-471 32-112 (116)
240 2ffh_A Protein (FFH); SRP54, s 97.6 0.00027 9.2E-09 74.2 11.7 145 89-238 97-266 (425)
241 1vma_A Cell division protein F 97.6 0.00028 9.7E-09 70.9 11.4 147 88-238 102-278 (306)
242 1rj9_A FTSY, signal recognitio 97.6 0.00055 1.9E-08 68.7 13.1 143 89-238 101-276 (304)
243 3end_A Light-independent proto 97.6 0.00027 9.3E-09 70.9 10.5 82 153-240 155-241 (307)
244 3cnl_A YLQF, putative uncharac 97.6 3.6E-05 1.2E-09 75.8 3.9 58 91-168 100-157 (262)
245 1wcv_1 SOJ, segregation protei 97.5 0.00022 7.5E-09 69.7 8.0 84 153-238 110-200 (257)
246 2oze_A ORF delta'; para, walke 97.4 0.00065 2.2E-08 67.7 10.9 83 153-237 153-242 (298)
247 1ls1_A Signal recognition part 97.4 0.00072 2.5E-08 67.6 10.8 144 89-237 97-265 (295)
248 2px0_A Flagellar biosynthesis 97.3 0.00028 9.6E-09 70.6 7.2 143 89-237 104-267 (296)
249 3kjh_A CO dehydrogenase/acetyl 97.3 0.00056 1.9E-08 66.0 8.8 86 153-245 130-216 (254)
250 3q5d_A Atlastin-1; G protein, 97.3 0.0008 2.7E-08 70.9 10.3 114 87-203 64-193 (447)
251 1g3q_A MIND ATPase, cell divis 97.2 0.0014 4.8E-08 62.7 10.4 82 153-238 110-192 (237)
252 1hyq_A MIND, cell division inh 97.2 0.0014 4.9E-08 63.8 10.5 82 153-238 109-191 (263)
253 1d1n_A Initiation factor 2; be 97.1 0.00095 3.2E-08 54.4 6.7 76 391-470 8-88 (99)
254 3k9g_A PF-32 protein; ssgcid, 97.1 0.0027 9.1E-08 62.1 10.8 77 153-232 143-221 (267)
255 2xj4_A MIPZ; replication, cell 97.1 0.00044 1.5E-08 68.7 5.1 82 154-237 103-212 (286)
256 3b9q_A Chloroplast SRP recepto 97.0 0.0037 1.3E-07 62.6 11.9 127 89-220 99-259 (302)
257 3q9l_A Septum site-determining 97.0 0.0015 5.2E-08 63.4 8.5 83 154-238 113-206 (260)
258 3bfv_A CAPA1, CAPB2, membrane 97.0 0.0017 5.8E-08 64.0 8.8 66 154-220 191-257 (271)
259 3cio_A ETK, tyrosine-protein k 96.9 0.0021 7.3E-08 64.2 9.0 66 154-220 213-279 (299)
260 3ea0_A ATPase, para family; al 96.8 0.013 4.6E-07 56.0 13.3 80 154-238 118-200 (245)
261 3la6_A Tyrosine-protein kinase 96.8 0.0025 8.6E-08 63.3 8.1 67 154-221 201-268 (286)
262 2crv_A IF-2MT, translation ini 96.8 0.0035 1.2E-07 52.9 7.6 75 392-470 13-96 (120)
263 2og2_A Putative signal recogni 96.8 0.0055 1.9E-07 62.7 10.6 127 89-220 156-316 (359)
264 1nij_A Hypothetical protein YJ 96.7 0.0033 1.1E-07 63.4 8.4 25 89-113 3-27 (318)
265 1t9h_A YLOQ, probable GTPase E 96.7 0.0011 3.6E-08 66.6 4.3 48 175-222 83-132 (307)
266 1cp2_A CP2, nitrogenase iron p 96.4 0.017 5.7E-07 56.3 10.8 84 153-238 114-203 (269)
267 2afh_E Nitrogenase iron protei 96.1 0.03 1E-06 55.3 11.2 85 153-239 117-207 (289)
268 4ido_A Atlastin-1; GTPase, GTP 96.0 0.025 8.6E-07 59.3 10.3 115 87-204 64-194 (457)
269 1t9h_A YLOQ, probable GTPase E 95.9 0.0023 7.9E-08 64.1 1.7 22 90-111 173-194 (307)
270 3of5_A Dethiobiotin synthetase 95.7 0.084 2.9E-06 50.3 11.9 87 153-239 109-201 (228)
271 3ug7_A Arsenical pump-driving 95.7 0.14 4.8E-06 52.1 14.1 68 179-247 237-315 (349)
272 2rcn_A Probable GTPase ENGC; Y 95.5 0.041 1.4E-06 56.1 9.5 45 176-222 128-175 (358)
273 3ez2_A Plasmid partition prote 95.5 0.027 9.2E-07 58.5 8.2 90 153-245 243-344 (398)
274 2yv5_A YJEQ protein; hydrolase 95.5 0.016 5.5E-07 57.9 6.2 21 91-111 166-186 (302)
275 1zo1_I IF2, translation initia 95.5 0.027 9.1E-07 60.3 8.2 75 393-471 412-491 (501)
276 1bif_A 6-phosphofructo-2-kinas 95.4 0.0047 1.6E-07 65.8 1.8 105 90-213 39-155 (469)
277 3zq6_A Putative arsenical pump 95.3 0.22 7.6E-06 50.0 14.0 66 180-246 223-299 (324)
278 3izy_P Translation initiation 95.3 0.064 2.2E-06 57.8 10.3 80 390-470 448-533 (537)
279 1kgd_A CASK, peripheral plasma 94.9 0.015 5.1E-07 53.1 3.5 24 90-113 5-28 (180)
280 3zvl_A Bifunctional polynucleo 94.8 0.048 1.6E-06 57.0 7.7 24 89-112 257-280 (416)
281 1lvg_A Guanylate kinase, GMP k 94.8 0.013 4.3E-07 54.7 2.9 23 90-112 4-26 (198)
282 1ye8_A Protein THEP1, hypothet 94.7 0.017 5.9E-07 52.9 3.3 23 92-114 2-24 (178)
283 3ney_A 55 kDa erythrocyte memb 94.6 0.022 7.4E-07 53.1 3.8 27 87-113 16-42 (197)
284 2yvu_A Probable adenylyl-sulfa 94.5 0.27 9.2E-06 44.7 11.1 24 89-112 12-35 (186)
285 1byi_A Dethiobiotin synthase; 94.4 0.18 6.1E-06 47.3 10.0 95 153-248 107-207 (224)
286 3a00_A Guanylate kinase, GMP k 94.3 0.019 6.5E-07 52.7 2.8 22 91-112 2-23 (186)
287 3c8u_A Fructokinase; YP_612366 94.2 0.03 1E-06 52.3 3.9 24 88-111 20-43 (208)
288 3tr0_A Guanylate kinase, GMP k 94.1 0.03 1E-06 51.9 3.6 24 90-113 7-30 (205)
289 3iqw_A Tail-anchored protein t 94.0 0.33 1.1E-05 49.0 11.5 67 180-246 223-302 (334)
290 1znw_A Guanylate kinase, GMP k 93.9 0.031 1.1E-06 52.2 3.4 23 90-112 20-42 (207)
291 1zp6_A Hypothetical protein AT 93.9 0.034 1.1E-06 50.9 3.6 22 90-111 9-30 (191)
292 1np6_A Molybdopterin-guanine d 93.9 0.033 1.1E-06 50.8 3.5 23 90-112 6-28 (174)
293 3tau_A Guanylate kinase, GMP k 93.9 0.035 1.2E-06 51.9 3.8 24 90-113 8-31 (208)
294 1z6g_A Guanylate kinase; struc 93.8 0.031 1.1E-06 52.9 3.1 23 90-112 23-45 (218)
295 2woo_A ATPase GET3; tail-ancho 93.7 0.44 1.5E-05 47.9 11.8 66 180-246 222-299 (329)
296 3io3_A DEHA2D07832P; chaperone 93.7 0.51 1.7E-05 47.9 12.3 66 180-246 232-311 (348)
297 1knq_A Gluconate kinase; ALFA/ 93.7 0.053 1.8E-06 48.9 4.4 26 90-115 8-33 (175)
298 1kag_A SKI, shikimate kinase I 93.6 0.037 1.3E-06 49.7 3.3 25 91-115 5-29 (173)
299 3kb2_A SPBC2 prophage-derived 93.6 0.04 1.4E-06 49.3 3.5 25 91-115 2-26 (173)
300 4gp7_A Metallophosphoesterase; 93.6 0.034 1.1E-06 50.4 3.0 22 90-111 9-30 (171)
301 1s96_A Guanylate kinase, GMP k 93.6 0.038 1.3E-06 52.4 3.5 25 89-113 15-39 (219)
302 3fgn_A Dethiobiotin synthetase 93.5 1.3 4.5E-05 42.6 14.2 82 153-234 125-214 (251)
303 1htw_A HI0065; nucleotide-bind 93.5 0.042 1.4E-06 49.3 3.3 25 89-113 32-56 (158)
304 3asz_A Uridine kinase; cytidin 93.5 0.043 1.5E-06 51.2 3.5 22 90-111 6-27 (211)
305 1xjc_A MOBB protein homolog; s 93.5 0.043 1.5E-06 49.8 3.3 24 89-112 3-26 (169)
306 4eun_A Thermoresistant glucoki 93.4 0.049 1.7E-06 50.5 3.8 27 90-116 29-55 (200)
307 3lw7_A Adenylate kinase relate 93.4 0.047 1.6E-06 48.7 3.6 24 91-115 2-25 (179)
308 1ihu_A Arsenical pump-driving 93.3 0.27 9.3E-06 53.7 10.2 40 181-220 200-240 (589)
309 2rcn_A Probable GTPase ENGC; Y 93.3 0.043 1.5E-06 56.0 3.4 21 91-111 216-236 (358)
310 2j41_A Guanylate kinase; GMP, 93.3 0.05 1.7E-06 50.4 3.6 23 90-112 6-28 (207)
311 1ihu_A Arsenical pump-driving 93.2 0.13 4.4E-06 56.2 7.3 67 178-246 489-567 (589)
312 2qor_A Guanylate kinase; phosp 93.1 0.045 1.5E-06 50.9 3.0 26 89-114 11-36 (204)
313 1ex7_A Guanylate kinase; subst 93.1 0.044 1.5E-06 50.5 2.9 22 92-113 3-24 (186)
314 2bdt_A BH3686; alpha-beta prot 93.1 0.055 1.9E-06 49.5 3.5 22 91-112 3-24 (189)
315 3tif_A Uncharacterized ABC tra 93.0 0.048 1.6E-06 52.3 3.1 22 90-111 31-52 (235)
316 3vaa_A Shikimate kinase, SK; s 93.0 0.061 2.1E-06 49.8 3.7 26 90-115 25-50 (199)
317 2f1r_A Molybdopterin-guanine d 93.0 0.029 9.9E-07 51.0 1.4 21 91-111 3-23 (171)
318 4fcw_A Chaperone protein CLPB; 92.9 0.56 1.9E-05 46.2 11.0 25 89-113 46-70 (311)
319 2cvh_A DNA repair and recombin 92.9 0.5 1.7E-05 43.8 10.0 23 90-112 20-42 (220)
320 1ukz_A Uridylate kinase; trans 92.8 0.092 3.2E-06 48.5 4.7 29 87-115 12-40 (203)
321 2pcj_A ABC transporter, lipopr 92.8 0.054 1.8E-06 51.5 3.1 21 91-111 31-51 (224)
322 3trf_A Shikimate kinase, SK; a 92.8 0.067 2.3E-06 48.6 3.6 26 90-115 5-30 (185)
323 2bbw_A Adenylate kinase 4, AK4 92.7 0.066 2.2E-06 51.4 3.7 27 90-116 27-53 (246)
324 3t61_A Gluconokinase; PSI-biol 92.7 0.069 2.4E-06 49.4 3.7 26 90-115 18-43 (202)
325 2ghi_A Transport protein; mult 92.7 0.08 2.7E-06 51.5 4.2 21 91-111 47-67 (260)
326 2onk_A Molybdate/tungstate ABC 92.6 0.065 2.2E-06 51.5 3.4 21 91-111 25-45 (240)
327 1ly1_A Polynucleotide kinase; 92.5 0.07 2.4E-06 48.0 3.4 22 91-112 3-24 (181)
328 1cke_A CK, MSSA, protein (cyti 92.5 0.071 2.4E-06 50.2 3.6 25 91-115 6-30 (227)
329 3uie_A Adenylyl-sulfate kinase 92.5 0.074 2.5E-06 49.3 3.6 23 90-112 25-47 (200)
330 1g7s_A Translation initiation 92.5 0.38 1.3E-05 52.5 9.8 80 388-472 462-548 (594)
331 1y63_A LMAJ004144AAA protein; 92.5 0.097 3.3E-06 47.8 4.3 25 89-113 9-33 (184)
332 1qhx_A CPT, protein (chloramph 92.4 0.083 2.8E-06 47.6 3.7 25 91-115 4-28 (178)
333 3b85_A Phosphate starvation-in 92.4 0.061 2.1E-06 50.5 2.9 21 91-111 23-43 (208)
334 1jjv_A Dephospho-COA kinase; P 92.4 0.071 2.4E-06 49.5 3.3 21 91-111 3-23 (206)
335 3aez_A Pantothenate kinase; tr 92.4 0.086 2.9E-06 52.8 4.1 25 87-111 87-111 (312)
336 3tqc_A Pantothenate kinase; bi 92.4 0.15 5.2E-06 51.1 5.9 27 87-113 89-115 (321)
337 2rhm_A Putative kinase; P-loop 92.4 0.098 3.3E-06 47.7 4.2 26 90-115 5-30 (193)
338 2eyu_A Twitching motility prot 92.4 0.083 2.8E-06 51.5 3.8 23 89-111 24-46 (261)
339 2cbz_A Multidrug resistance-as 92.3 0.069 2.3E-06 51.2 3.1 21 91-111 32-52 (237)
340 3cm0_A Adenylate kinase; ATP-b 92.3 0.097 3.3E-06 47.5 4.1 26 90-115 4-29 (186)
341 2if2_A Dephospho-COA kinase; a 92.3 0.067 2.3E-06 49.5 3.0 22 91-112 2-23 (204)
342 1b0u_A Histidine permease; ABC 92.3 0.069 2.4E-06 52.0 3.2 22 90-111 32-53 (262)
343 2jaq_A Deoxyguanosine kinase; 92.3 0.084 2.9E-06 48.6 3.6 24 92-115 2-25 (205)
344 2pze_A Cystic fibrosis transme 92.3 0.072 2.5E-06 50.8 3.2 21 91-111 35-55 (229)
345 1mv5_A LMRA, multidrug resista 92.3 0.071 2.4E-06 51.3 3.2 22 90-111 28-49 (243)
346 2d2e_A SUFC protein; ABC-ATPas 92.2 0.074 2.5E-06 51.4 3.3 21 91-111 30-50 (250)
347 4g1u_C Hemin import ATP-bindin 92.2 0.071 2.4E-06 52.1 3.2 21 91-111 38-58 (266)
348 3gfo_A Cobalt import ATP-bindi 92.2 0.072 2.5E-06 52.3 3.2 21 91-111 35-55 (275)
349 1g6h_A High-affinity branched- 92.2 0.072 2.5E-06 51.8 3.1 21 91-111 34-54 (257)
350 1uf9_A TT1252 protein; P-loop, 92.2 0.086 2.9E-06 48.5 3.6 26 88-113 6-31 (203)
351 2ff7_A Alpha-hemolysin translo 92.2 0.073 2.5E-06 51.4 3.1 21 91-111 36-56 (247)
352 2v9p_A Replication protein E1; 92.1 0.078 2.7E-06 52.8 3.4 23 89-111 125-147 (305)
353 2qt1_A Nicotinamide riboside k 92.1 0.1 3.5E-06 48.5 4.0 24 88-111 19-42 (207)
354 1nks_A Adenylate kinase; therm 92.1 0.08 2.7E-06 48.2 3.3 24 91-114 2-25 (194)
355 3lnc_A Guanylate kinase, GMP k 92.1 0.055 1.9E-06 51.4 2.2 22 90-111 27-48 (231)
356 2i3b_A HCR-ntpase, human cance 92.1 0.077 2.6E-06 49.0 3.1 21 92-112 3-23 (189)
357 1sgw_A Putative ABC transporte 92.1 0.073 2.5E-06 50.2 3.0 21 91-111 36-56 (214)
358 3iij_A Coilin-interacting nucl 92.1 0.095 3.3E-06 47.4 3.7 27 89-115 10-36 (180)
359 1ji0_A ABC transporter; ATP bi 92.0 0.078 2.7E-06 50.9 3.1 21 91-111 33-53 (240)
360 2olj_A Amino acid ABC transpor 92.0 0.079 2.7E-06 51.7 3.2 22 90-111 50-71 (263)
361 3qxc_A Dethiobiotin synthetase 92.0 0.84 2.9E-05 43.7 10.4 83 153-235 130-217 (242)
362 2vhj_A Ntpase P4, P4; non- hyd 92.0 0.18 6.2E-06 50.5 5.8 23 91-113 124-146 (331)
363 3fkq_A NTRC-like two-domain pr 91.9 0.29 1E-05 50.1 7.6 35 153-189 258-292 (373)
364 2zu0_C Probable ATP-dependent 91.9 0.086 2.9E-06 51.5 3.4 21 91-111 47-67 (267)
365 1u0l_A Probable GTPase ENGC; p 91.9 0.08 2.7E-06 52.7 3.1 21 91-111 170-190 (301)
366 2jeo_A Uridine-cytidine kinase 91.9 0.11 3.7E-06 49.8 4.0 27 89-115 24-50 (245)
367 2ehv_A Hypothetical protein PH 91.9 0.089 3E-06 50.1 3.4 22 90-111 30-51 (251)
368 3nh6_A ATP-binding cassette SU 91.9 0.12 4E-06 51.7 4.3 22 90-111 80-101 (306)
369 2c95_A Adenylate kinase 1; tra 91.8 0.1 3.6E-06 47.6 3.7 26 90-115 9-34 (196)
370 4e22_A Cytidylate kinase; P-lo 91.8 0.11 3.8E-06 50.2 4.0 27 90-116 27-53 (252)
371 3ec2_A DNA replication protein 91.8 0.074 2.5E-06 48.2 2.6 23 89-111 37-59 (180)
372 3fb4_A Adenylate kinase; psych 91.8 0.1 3.4E-06 48.8 3.6 24 92-115 2-25 (216)
373 1tev_A UMP-CMP kinase; ploop, 91.8 0.11 3.8E-06 47.2 3.9 25 91-115 4-28 (196)
374 2qi9_C Vitamin B12 import ATP- 91.8 0.087 3E-06 50.9 3.2 21 91-111 27-47 (249)
375 1vpl_A ABC transporter, ATP-bi 91.8 0.087 3E-06 51.1 3.2 21 91-111 42-62 (256)
376 3gd7_A Fusion complex of cysti 91.7 0.17 6E-06 52.1 5.6 48 91-141 48-96 (390)
377 3dl0_A Adenylate kinase; phosp 91.7 0.11 3.7E-06 48.6 3.7 24 92-115 2-25 (216)
378 2vp4_A Deoxynucleoside kinase; 91.7 0.086 2.9E-06 50.1 3.1 26 86-111 16-41 (230)
379 1rz3_A Hypothetical protein rb 91.7 0.11 3.8E-06 48.1 3.8 26 87-112 19-44 (201)
380 1odf_A YGR205W, hypothetical 3 91.7 0.12 4.1E-06 51.2 4.2 25 87-111 28-52 (290)
381 3ez9_A Para; DNA binding, wing 91.6 0.24 8.2E-06 51.3 6.6 90 153-245 246-347 (403)
382 2ixe_A Antigen peptide transpo 91.6 0.091 3.1E-06 51.5 3.1 22 90-111 45-66 (271)
383 2cdn_A Adenylate kinase; phosp 91.6 0.13 4.6E-06 47.4 4.2 26 90-115 20-45 (201)
384 2ihy_A ABC transporter, ATP-bi 91.6 0.093 3.2E-06 51.6 3.2 21 91-111 48-68 (279)
385 1aky_A Adenylate kinase; ATP:A 91.6 0.11 3.9E-06 48.7 3.7 26 90-115 4-29 (220)
386 1kht_A Adenylate kinase; phosp 91.5 0.097 3.3E-06 47.6 3.1 24 91-114 4-27 (192)
387 2yz2_A Putative ABC transporte 91.5 0.095 3.2E-06 51.2 3.1 21 91-111 34-54 (266)
388 1via_A Shikimate kinase; struc 91.5 0.1 3.5E-06 47.0 3.1 25 91-115 5-29 (175)
389 2plr_A DTMP kinase, probable t 91.5 0.13 4.5E-06 47.6 4.0 25 91-115 5-29 (213)
390 4a74_A DNA repair and recombin 91.4 0.093 3.2E-06 49.3 3.0 22 90-111 25-46 (231)
391 2nq2_C Hypothetical ABC transp 91.4 0.099 3.4E-06 50.7 3.1 21 91-111 32-52 (253)
392 1qf9_A UMP/CMP kinase, protein 91.4 0.15 5.2E-06 46.3 4.3 26 90-115 6-31 (194)
393 1sxj_A Activator 1 95 kDa subu 91.4 0.75 2.6E-05 49.3 10.4 27 89-115 76-102 (516)
394 3umf_A Adenylate kinase; rossm 91.4 0.16 5.5E-06 47.9 4.5 30 86-115 25-54 (217)
395 2wwf_A Thymidilate kinase, put 91.3 0.12 4E-06 48.0 3.5 24 90-113 10-33 (212)
396 2v54_A DTMP kinase, thymidylat 91.3 0.12 4E-06 47.7 3.4 24 90-113 4-27 (204)
397 1sq5_A Pantothenate kinase; P- 91.3 0.13 4.3E-06 51.4 3.9 25 88-112 78-102 (308)
398 1uj2_A Uridine-cytidine kinase 91.3 0.14 4.9E-06 49.3 4.1 28 88-115 20-47 (252)
399 1zd8_A GTP:AMP phosphotransfer 91.2 0.12 4.3E-06 48.7 3.6 26 90-115 7-32 (227)
400 3pfi_A Holliday junction ATP-d 91.1 0.67 2.3E-05 46.3 9.2 25 89-113 54-78 (338)
401 3tlx_A Adenylate kinase 2; str 91.1 0.16 5.4E-06 48.7 4.2 27 89-115 28-54 (243)
402 2gza_A Type IV secretion syste 91.1 0.093 3.2E-06 53.7 2.7 21 91-111 176-196 (361)
403 1zuh_A Shikimate kinase; alpha 91.1 0.14 4.8E-06 45.7 3.6 26 90-115 7-32 (168)
404 3n70_A Transport activator; si 91.0 0.39 1.3E-05 41.8 6.4 21 91-111 25-45 (145)
405 2kjq_A DNAA-related protein; s 91.0 0.1 3.6E-06 46.0 2.6 23 89-111 35-57 (149)
406 1nn5_A Similar to deoxythymidy 90.9 0.12 4.2E-06 47.9 3.3 24 89-112 8-31 (215)
407 2bwj_A Adenylate kinase 5; pho 90.9 0.14 4.7E-06 46.9 3.4 25 91-115 13-37 (199)
408 3jvv_A Twitching mobility prot 90.8 0.12 4.2E-06 52.7 3.3 21 91-111 124-144 (356)
409 3kta_A Chromosome segregation 90.8 0.14 4.9E-06 46.3 3.5 24 92-115 28-51 (182)
410 2pjz_A Hypothetical protein ST 90.8 0.12 4.3E-06 50.2 3.2 21 91-111 31-51 (263)
411 2iyv_A Shikimate kinase, SK; t 90.7 0.12 4.2E-06 46.8 2.9 25 91-115 3-27 (184)
412 2v1u_A Cell division control p 90.7 1.1 3.8E-05 45.3 10.5 25 88-112 42-66 (387)
413 2pt5_A Shikimate kinase, SK; a 90.7 0.16 5.4E-06 45.2 3.6 24 92-115 2-25 (168)
414 1e6c_A Shikimate kinase; phosp 90.7 0.14 4.6E-06 45.9 3.1 25 91-115 3-27 (173)
415 3tui_C Methionine import ATP-b 90.7 0.13 4.5E-06 52.5 3.4 22 90-111 54-75 (366)
416 1vht_A Dephospho-COA kinase; s 90.7 0.16 5.3E-06 47.6 3.7 23 90-112 4-26 (218)
417 1zak_A Adenylate kinase; ATP:A 90.7 0.13 4.6E-06 48.2 3.2 26 90-115 5-30 (222)
418 1gvn_B Zeta; postsegregational 90.6 0.17 5.7E-06 50.0 4.0 28 87-114 30-57 (287)
419 1hqc_A RUVB; extended AAA-ATPa 90.6 1 3.5E-05 44.5 9.9 24 90-113 38-61 (324)
420 2pez_A Bifunctional 3'-phospho 90.5 0.16 5.6E-06 45.8 3.5 23 90-112 5-27 (179)
421 2ze6_A Isopentenyl transferase 90.5 0.17 5.9E-06 48.8 3.9 25 91-115 2-26 (253)
422 2bbs_A Cystic fibrosis transme 90.4 0.13 4.5E-06 50.9 3.0 22 90-111 64-85 (290)
423 2vli_A Antibiotic resistance p 90.4 0.13 4.6E-06 46.4 2.8 26 90-115 5-30 (183)
424 4a1f_A DNAB helicase, replicat 90.3 0.21 7.2E-06 50.5 4.5 24 90-113 46-69 (338)
425 2pbr_A DTMP kinase, thymidylat 90.3 0.15 5E-06 46.5 3.1 21 92-112 2-22 (195)
426 3fvq_A Fe(3+) IONS import ATP- 90.3 0.13 4.5E-06 52.4 3.0 21 91-111 31-51 (359)
427 2pt7_A CAG-ALFA; ATPase, prote 90.3 0.096 3.3E-06 52.9 1.9 21 91-111 172-192 (330)
428 1gtv_A TMK, thymidylate kinase 90.2 0.076 2.6E-06 49.4 1.0 22 92-113 2-23 (214)
429 2ewv_A Twitching motility prot 90.2 0.17 5.8E-06 52.0 3.7 23 89-111 135-157 (372)
430 2chg_A Replication factor C sm 90.1 0.4 1.4E-05 44.1 6.0 22 91-112 39-60 (226)
431 2z0h_A DTMP kinase, thymidylat 90.1 0.15 5E-06 46.6 2.9 21 92-112 2-22 (197)
432 1e4v_A Adenylate kinase; trans 90.1 0.17 6E-06 47.2 3.5 24 92-115 2-25 (214)
433 1lw7_A Transcriptional regulat 90.1 0.15 5.1E-06 52.1 3.2 23 90-112 170-192 (365)
434 3a4m_A L-seryl-tRNA(SEC) kinas 90.0 0.18 6.2E-06 48.8 3.5 24 90-113 4-27 (260)
435 2p5t_B PEZT; postsegregational 89.9 0.18 6.2E-06 48.6 3.5 29 87-115 29-57 (253)
436 1z47_A CYSA, putative ABC-tran 89.9 0.17 5.7E-06 51.6 3.3 21 91-111 42-62 (355)
437 1ak2_A Adenylate kinase isoenz 89.9 0.21 7.2E-06 47.4 3.9 26 90-115 16-41 (233)
438 3rlf_A Maltose/maltodextrin im 89.8 0.16 5.5E-06 52.2 3.1 21 91-111 30-50 (381)
439 2yyz_A Sugar ABC transporter, 89.7 0.17 5.9E-06 51.6 3.3 21 91-111 30-50 (359)
440 1d2n_A N-ethylmaleimide-sensit 89.7 1.9 6.4E-05 41.6 10.8 27 87-113 61-87 (272)
441 2it1_A 362AA long hypothetical 89.7 0.18 6.1E-06 51.5 3.4 21 91-111 30-50 (362)
442 2oap_1 GSPE-2, type II secreti 89.6 0.19 6.6E-06 53.8 3.7 21 91-111 261-281 (511)
443 3sr0_A Adenylate kinase; phosp 89.6 0.21 7.3E-06 46.6 3.6 25 92-116 2-26 (206)
444 3nwj_A ATSK2; P loop, shikimat 89.6 0.18 6E-06 48.8 3.1 25 91-115 49-73 (250)
445 2f6r_A COA synthase, bifunctio 89.5 0.23 7.8E-06 48.8 3.9 23 89-111 74-96 (281)
446 1jbk_A CLPB protein; beta barr 89.5 0.24 8.2E-06 44.4 3.8 23 90-112 43-65 (195)
447 1g29_1 MALK, maltose transport 89.5 0.19 6.4E-06 51.6 3.3 21 91-111 30-50 (372)
448 1v43_A Sugar-binding transport 89.4 0.19 6.5E-06 51.5 3.4 22 90-111 37-58 (372)
449 2grj_A Dephospho-COA kinase; T 89.3 0.27 9.2E-06 45.4 4.0 29 87-115 9-37 (192)
450 1p9r_A General secretion pathw 89.3 0.19 6.5E-06 52.4 3.3 23 90-112 167-189 (418)
451 3hr8_A Protein RECA; alpha and 89.2 0.95 3.2E-05 46.0 8.3 25 89-113 60-84 (356)
452 2x8a_A Nuclear valosin-contain 89.2 0.22 7.6E-06 48.7 3.5 24 91-114 45-68 (274)
453 3syl_A Protein CBBX; photosynt 89.1 0.62 2.1E-05 45.8 6.9 25 88-112 65-89 (309)
454 2xb4_A Adenylate kinase; ATP-b 89.0 0.25 8.5E-06 46.6 3.6 24 92-115 2-25 (223)
455 3be4_A Adenylate kinase; malar 89.0 0.24 8.1E-06 46.4 3.4 25 91-115 6-30 (217)
456 1f2t_A RAD50 ABC-ATPase; DNA d 88.9 0.24 8.3E-06 43.6 3.3 23 92-114 25-47 (149)
457 3d31_A Sulfate/molybdate ABC t 88.8 0.15 5.2E-06 51.8 2.1 21 91-111 27-47 (348)
458 3r20_A Cytidylate kinase; stru 88.8 0.26 8.8E-06 47.1 3.6 26 90-115 9-34 (233)
459 1m7g_A Adenylylsulfate kinase; 88.8 0.27 9.4E-06 45.7 3.7 23 90-112 25-47 (211)
460 2w0m_A SSO2452; RECA, SSPF, un 88.8 0.24 8.1E-06 46.4 3.3 21 91-111 24-44 (235)
461 1ixz_A ATP-dependent metallopr 88.5 0.27 9.3E-06 47.1 3.6 23 91-113 50-72 (254)
462 4eaq_A DTMP kinase, thymidylat 88.1 0.35 1.2E-05 45.9 4.0 26 89-114 25-50 (229)
463 4b4t_L 26S protease subunit RP 88.0 1.2 4.1E-05 46.5 8.3 31 85-115 210-240 (437)
464 3ake_A Cytidylate kinase; CMP 87.9 0.32 1.1E-05 44.7 3.6 24 92-115 4-27 (208)
465 1oxx_K GLCV, glucose, ABC tran 87.9 0.16 5.6E-06 51.7 1.6 21 91-111 32-52 (353)
466 1q3t_A Cytidylate kinase; nucl 87.7 0.36 1.2E-05 45.8 3.8 28 88-115 14-41 (236)
467 2r8r_A Sensor protein; KDPD, P 87.6 0.48 1.6E-05 44.9 4.5 22 90-111 6-27 (228)
468 2b8t_A Thymidine kinase; deoxy 87.5 0.55 1.9E-05 44.4 4.9 42 180-221 89-130 (223)
469 3qf7_A RAD50; ABC-ATPase, ATPa 87.5 0.3 1E-05 50.0 3.3 22 92-113 25-46 (365)
470 4f4c_A Multidrug resistance pr 87.5 0.13 4.4E-06 61.7 0.7 22 90-111 1105-1126(1321)
471 2p65_A Hypothetical protein PF 87.3 0.27 9.3E-06 44.0 2.6 24 89-112 42-65 (187)
472 1a7j_A Phosphoribulokinase; tr 87.3 0.2 6.9E-06 49.5 1.8 23 90-112 5-27 (290)
473 3euj_A Chromosome partition pr 87.1 0.32 1.1E-05 51.5 3.4 21 91-111 30-50 (483)
474 3pvs_A Replication-associated 87.1 2.8 9.6E-05 43.9 10.6 25 90-114 50-74 (447)
475 2zr9_A Protein RECA, recombina 87.1 0.96 3.3E-05 45.8 6.8 23 90-112 61-83 (349)
476 1iy2_A ATP-dependent metallopr 87.0 0.37 1.3E-05 47.0 3.6 23 91-113 74-96 (278)
477 3te6_A Regulatory protein SIR3 87.0 2.2 7.6E-05 42.5 9.3 27 88-114 43-69 (318)
478 1cr0_A DNA primase/helicase; R 87.0 0.3 1E-05 48.1 3.0 22 90-111 35-56 (296)
479 1in4_A RUVB, holliday junction 87.0 0.31 1.1E-05 49.0 3.1 25 91-115 52-76 (334)
480 2w58_A DNAI, primosome compone 87.0 0.35 1.2E-05 44.4 3.3 22 91-112 55-76 (202)
481 1xwi_A SKD1 protein; VPS4B, AA 86.9 1.8 6.3E-05 43.1 8.8 25 89-113 44-68 (322)
482 3bos_A Putative DNA replicatio 86.8 0.37 1.3E-05 45.1 3.4 24 89-112 51-74 (242)
483 1lv7_A FTSH; alpha/beta domain 86.8 0.43 1.5E-05 45.8 3.9 24 90-113 45-68 (257)
484 2obl_A ESCN; ATPase, hydrolase 86.8 0.34 1.2E-05 49.1 3.2 27 88-114 69-95 (347)
485 1n0w_A DNA repair protein RAD5 86.7 0.38 1.3E-05 45.4 3.4 23 90-112 24-46 (243)
486 2npi_A Protein CLP1; CLP1-PCF1 86.6 0.31 1.1E-05 51.4 3.0 23 89-111 137-159 (460)
487 1svm_A Large T antigen; AAA+ f 86.5 0.39 1.3E-05 49.3 3.5 25 88-112 167-191 (377)
488 3io5_A Recombination and repai 86.2 5 0.00017 40.0 11.2 21 92-112 30-50 (333)
489 3qf4_B Uncharacterized ABC tra 86.1 0.54 1.8E-05 51.4 4.6 22 90-111 381-402 (598)
490 1ltq_A Polynucleotide kinase; 86.0 0.42 1.4E-05 47.0 3.4 22 91-112 3-24 (301)
491 3d3q_A TRNA delta(2)-isopenten 86.0 0.51 1.7E-05 47.6 4.0 25 91-115 8-32 (340)
492 1r6b_X CLPA protein; AAA+, N-t 86.0 2.9 9.9E-05 46.9 10.7 94 88-205 486-582 (758)
493 2axn_A 6-phosphofructo-2-kinas 85.9 0.82 2.8E-05 49.0 5.9 24 90-113 35-58 (520)
494 3crm_A TRNA delta(2)-isopenten 85.9 0.53 1.8E-05 47.1 4.0 25 91-115 6-30 (323)
495 1yqt_A RNAse L inhibitor; ATP- 85.9 0.4 1.4E-05 51.7 3.4 23 89-111 46-68 (538)
496 3b5x_A Lipid A export ATP-bind 85.6 0.4 1.4E-05 52.3 3.2 22 90-111 369-390 (582)
497 4a82_A Cystic fibrosis transme 85.5 0.48 1.6E-05 51.6 3.8 22 90-111 367-388 (578)
498 1xp8_A RECA protein, recombina 85.5 1.6 5.6E-05 44.4 7.5 24 90-113 74-97 (366)
499 2qmh_A HPR kinase/phosphorylas 85.4 0.52 1.8E-05 43.7 3.4 23 91-113 35-57 (205)
500 2bjv_A PSP operon transcriptio 85.3 2 6.9E-05 41.1 7.9 23 91-113 30-52 (265)
No 1
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.1e-94 Score=817.23 Aligned_cols=485 Identities=61% Similarity=0.989 Sum_probs=439.2
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-------CeEE
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------KHRI 157 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-------~~~i 157 (571)
.|.+++|||+|+||+|||||||+++|++.+|.+.+.|+++.|++++|++++|++||+|+.++.+++.|. ++.|
T Consensus 8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i 87 (709)
T 4fn5_A 8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV 87 (709)
T ss_dssp SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence 466789999999999999999999999999999999999999999999999999999999999999985 6899
Q ss_pred EEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCC
Q 008294 158 NIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGA 237 (571)
Q Consensus 158 ~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~ 237 (571)
||||||||.||..++.++++.+|+||+||||.+|++.||+.+|+++.++++|.++|+||||+..+++..+++++++.|+.
T Consensus 88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~ 167 (709)
T 4fn5_A 88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGH 167 (709)
T ss_dssp EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCS
T ss_pred EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCC
Q 008294 238 KPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPD 317 (571)
Q Consensus 238 ~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~ 317 (571)
.+.++++|++.+++|.|++|++.+++++|.....|+.+...++|.++.+....+|..++|.+++.|++++++|+++.+++
T Consensus 168 ~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~ 247 (709)
T 4fn5_A 168 TPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELS 247 (709)
T ss_dssp CEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCC
T ss_pred ceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEE
Q 008294 318 EETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 397 (571)
Q Consensus 318 ~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~ 397 (571)
.+++...++.....+.++|++++||+++.|++.|||+|++++|+|.+.+..+....++......+.|++++|++++|||+
T Consensus 248 ~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~ 327 (709)
T 4fn5_A 248 EAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKI 327 (709)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEEC
T ss_pred HHHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEe
Confidence 99999999999999999999999999999999999999999999999877766555455556678899999999999999
Q ss_pred eecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcc
Q 008294 398 MSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPI 477 (571)
Q Consensus 398 ~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~ 477 (571)
..|++.|+++|+|||||+|++||.|+|...++.+++++++.++|+++++|++|.|||||+|.|++++.+|||||+.+.+.
T Consensus 328 ~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~gdTl~~~~~~~ 407 (709)
T 4fn5_A 328 ATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEKPI 407 (709)
T ss_dssp CCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSCCTTCEEECSSSCC
T ss_pred ecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecCCCcCccCCEecCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEe
Q 008294 478 LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVH 557 (571)
Q Consensus 478 ~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~ 557 (571)
.++++.+|+|+++++|+|.+++|++||.++|++|++|||++++++++||||++|+|||||||||+++|||++||+|++++
T Consensus 408 ~~~~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~gvev~vs 487 (709)
T 4fn5_A 408 ILERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEANIG 487 (709)
T ss_dssp BCC----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTTCCCBCCB
T ss_pred cCCCCCCCCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHhCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEEEEec
Q 008294 558 PKSTIVKAFLKS 569 (571)
Q Consensus 558 ~p~i~yke~~~~ 569 (571)
+|.|.|||||++
T Consensus 488 ~P~V~yrETi~~ 499 (709)
T 4fn5_A 488 KPQVAYRETITK 499 (709)
T ss_dssp CCCCCCEEECCC
T ss_pred eceEEEEEEEec
Confidence 999999999964
No 2
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=1.3e-88 Score=764.22 Aligned_cols=484 Identities=61% Similarity=1.001 Sum_probs=455.8
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-------eEEE
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-------HRIN 158 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-------~~i~ 158 (571)
+.++++||+|+||+|+|||||+++|++.+|.+...|.++.|.+++|+++.|+++|+|+......+.|++ +.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 446789999999999999999999999889888888888889999999999999999999999999987 9999
Q ss_pred EEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCc
Q 008294 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAK 238 (571)
Q Consensus 159 liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~ 238 (571)
|||||||.+|..++.++++.+|++|+|||+++|+..+++.+|+.+...++|+++|+||+|+..+++.++++++++.++..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~ 165 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGAN 165 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCH
Q 008294 239 PLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDE 318 (571)
Q Consensus 239 ~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~ 318 (571)
+.++++|++.+.+|+|++|++.+++++|+....|..+...++|+++.+...++|..|+|.+++.||++|++||+|.+++.
T Consensus 166 ~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~ 245 (704)
T 2rdo_7 166 PVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTE 245 (704)
T ss_pred ceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCH
Confidence 99999999999999999999999999997644577788888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEe
Q 008294 319 ETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIM 398 (571)
Q Consensus 319 ~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~ 398 (571)
+++...+++++..+.++|+||+||++|.|++.|||+|++++|+|.+++..++..+.++.....+.|++++||+++|||++
T Consensus 246 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~ 325 (704)
T 2rdo_7 246 AEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIA 325 (704)
T ss_pred HHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEE
Confidence 99999999999999999999999999999999999999999999886655432211111124577889999999999999
Q ss_pred ecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCccc
Q 008294 399 SDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPIL 478 (571)
Q Consensus 399 ~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~ 478 (571)
.|+++|+++|+|||||+|++||.|++.+.++.++|++|+.++|+++++|++|.|||||+|.|++++.+|||||+.+.+..
T Consensus 326 ~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~GdTl~~~~~~~~ 405 (704)
T 2rdo_7 326 TDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPII 405 (704)
T ss_pred EcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccCccCCEEeCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred ccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEec
Q 008294 479 LERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHP 558 (571)
Q Consensus 479 l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~ 558 (571)
++++.++.|+++++|+|++++|++||.++|++|++|||+|++++|+||||++|+|||||||||+++||+++||+++++++
T Consensus 406 l~~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f~v~v~~~~ 485 (704)
T 2rdo_7 406 LERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGK 485 (704)
T ss_pred cCCCCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEEec
Q 008294 559 KSTIVKAFLKS 569 (571)
Q Consensus 559 p~i~yke~~~~ 569 (571)
|.|.|||||++
T Consensus 486 p~V~yrEti~~ 496 (704)
T 2rdo_7 486 PQVAYRETIRQ 496 (704)
T ss_pred CEEEEEEeecc
Confidence 99999999974
No 3
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=9.9e-87 Score=748.44 Aligned_cols=483 Identities=57% Similarity=0.934 Sum_probs=428.6
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
.+.+++++|+|+||+|+|||||+|+|++.++.+...+.+.++.+++|+.+.|+++|+|+......+.|+++.++||||||
T Consensus 5 ~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 84 (693)
T 2xex_A 5 FSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPG 84 (693)
T ss_dssp SCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcC
Confidence 45677999999999999999999999988888877777888889999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
|.+|..++.++++.+|++|+|+|+.+++..++...|..+...++|+++|+||+|+..++..++++++++.++..+.+.++
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~i 164 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQL 164 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEE
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred cCCCCCCcceeeecccceeEEec-CCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWS-GEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~ 323 (571)
|++.+.+|.+++|++.++.++|. . .|+.+...++|+.+.+.++.+|+.++|.+++.||++|++||+|.+++.+++..
T Consensus 165 pisa~~~~~~l~d~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~ 242 (693)
T 2xex_A 165 PIGAEDEFEAIIDLVEMKCFKYTND--LGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKE 242 (693)
T ss_dssp EECCGGGCCEEEETTTTEEEECCSS--SSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHH
T ss_pred ecccCCCcceeeeeecceeEEeccC--CCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999999999999997 3 47778888999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCC
Q 008294 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFV 403 (571)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~ 403 (571)
.+++++..+.++||||+||++|.|++.|||+|++++|+|.+++.+++..+.+.+....+.|++++||+++|||++.|+++
T Consensus 243 ~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~ 322 (693)
T 2xex_A 243 AIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYV 322 (693)
T ss_dssp HHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTT
T ss_pred HHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCCC
Confidence 99999999999999999999999999999999999999987654332111111233467788999999999999999999
Q ss_pred ceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCC
Q 008294 404 GSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMD 483 (571)
Q Consensus 404 G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~ 483 (571)
|+++|+|||||+|++||.|++..+++.++|++|+.++|+++++|++|.|||||+|.|++++.+|||||+.+.+..+++++
T Consensus 323 g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~~~~~~~~~~~~~ 402 (693)
T 2xex_A 323 GKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESME 402 (693)
T ss_dssp EEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEEETTCCEECCCCS
T ss_pred ceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEeCcccCccCCEEecCCCccccCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEE
Q 008294 484 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIV 563 (571)
Q Consensus 484 ~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~y 563 (571)
++.|+++++|+|++++|++||.++|++|++|||+|++++|+||||++|+|||||||||+++||+++||+++++++|.|.|
T Consensus 403 ~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~y 482 (693)
T 2xex_A 403 FPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSY 482 (693)
T ss_dssp SCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEECC
T ss_pred CCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEec
Q 008294 564 KAFLKS 569 (571)
Q Consensus 564 ke~~~~ 569 (571)
||||++
T Consensus 483 rEti~~ 488 (693)
T 2xex_A 483 RETFKS 488 (693)
T ss_dssp EEEESS
T ss_pred EEEecc
Confidence 999985
No 4
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=2.2e-88 Score=741.37 Aligned_cols=458 Identities=28% Similarity=0.425 Sum_probs=376.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCc----ccccchhhhhhhceeEeeceEEEeecCeEEEEEcCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~----~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTP 163 (571)
.++|||+|+||+|||||||+++||+.+|.+.+.|.++.|+ +++|++++|++||+|+.++..++.|++++|||||||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 4689999999999999999999999999999999998774 889999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeee
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (571)
||.||..++.++|+.+|+||+||||.+|++.||+.+|+++.++++|+++||||||+.++++.+++++|++.|+..+.|++
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~~ 188 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMT 188 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEESE
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHh-cCCCCCHHHHH
Q 008294 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYL-EGNEPDEETIK 322 (571)
Q Consensus 244 ~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l-~~~~~~~~~l~ 322 (571)
+||+.+..|.|++|++.++++.|.....+.......+.....+...+......+.. ...++.+. .+.+...
T Consensus 189 ~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~---- 260 (548)
T 3vqt_A 189 WPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQL----RMDLALLEEAGTPFDE---- 260 (548)
T ss_dssp EEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHH----HHHHHHHHHHCCCCCH----
T ss_pred eeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHh----hhHHHHHhhccCchhH----
Confidence 99999999999999999999999876544433332222211111111111111111 11111111 1222332
Q ss_pred HHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeec--
Q 008294 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSD-- 400 (571)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d-- 400 (571)
+.+..+.++||||+||++|.|++.|||+|++++|+|.+....... ..+.+.||.++|||+..+
T Consensus 261 ----e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~-----------~~~~~~p~~a~vfKi~~~~~ 325 (548)
T 3vqt_A 261 ----ERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRV-----------VEPGEEAFTGVVFKIQANMD 325 (548)
T ss_dssp ----HHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSE-----------ECTTCSSCEEEEEEEECC--
T ss_pred ----HHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccccc-----------cCCCCcCceEEEEEEEccCC
Confidence 234567899999999999999999999999999999875432211 123467999999999876
Q ss_pred -CCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccc
Q 008294 401 -PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILL 479 (571)
Q Consensus 401 -~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l 479 (571)
+++|+++|+|||||+|++||.|+|.++++.+|+++++.++|+++++|++|.|||||+|.|++++.+|||||+.+.+..+
T Consensus 326 ~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~~~~~ 405 (548)
T 3vqt_A 326 KAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKF 405 (548)
T ss_dssp -----CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSSCCCB
T ss_pred cCCCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCCCCcccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred cCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEE----
Q 008294 480 ERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLML---- 555 (571)
Q Consensus 480 ~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~---- 555 (571)
++++++.|+++++|+|+++.|.+||.++|++|+++|| +.+.++++|||++|+|||||||||+++||+++||||+.
T Consensus 406 ~~i~~~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~-~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey~vev~~e~v 484 (548)
T 3vqt_A 406 VGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGA-VQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEGV 484 (548)
T ss_dssp CCCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTS-SEEEEESSSCCCEEEESSTHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred CCCCCCCCcceeeeeeCCchhHHHHHHHHHHhhhcCc-eeEEEECCCCcEEEEEECHHHHHHHHHHHHHHhCCCEEEeec
Confidence 9999999999999999999999999999999999998 56778899999999999999999999999999999976
Q ss_pred -EecCeEEEEEEEec
Q 008294 556 -VHPKSTIVKAFLKS 569 (571)
Q Consensus 556 -~~~p~i~yke~~~~ 569 (571)
++.|+|.|||+|+.
T Consensus 485 ~~~~P~V~YrEti~~ 499 (548)
T 3vqt_A 485 STHTARWVYCEDKKI 499 (548)
T ss_dssp SCCEEEEEECSCHHH
T ss_pred cccCceEEecCCccc
Confidence 57799999999974
No 5
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=2.3e-86 Score=745.20 Aligned_cols=481 Identities=59% Similarity=0.952 Sum_probs=382.6
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+.+++++|+|+||+|+|||||+++|++.+|.....+.++.+.+++|+++.|+++|+|+......+.|+++.++|||||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~ 87 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGH 87 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCc
Confidence 34568999999999999999999999998988888888888899999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
.+|..++.++++.+|++|+|+|+.++...++...|..+...++|+++|+||+|+..++..++++++++.++..+.+.++|
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~P 167 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLP 167 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEEE
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
++.+.+|.|++|++.+++++|.+. .|..+...++|+++.+..+.+|+.++|.+++.||++|++||+|.+++.+++...+
T Consensus 168 i~~~~~~~g~~d~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~ 246 (691)
T 1dar_A 168 IGREDTFSGIIDVLRMKAYTYGND-LGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAI 246 (691)
T ss_dssp ESCGGGCCEEEETTTTEEEEECST-TSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHH
T ss_pred ccCCCcccchhhhhcceeeEeccC-CCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHH
Confidence 999999999999999999999722 3666788899999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCce
Q 008294 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~ 405 (571)
++.+..+.++|+|++||++|.|++.||++|++++|+|.+++.+++... .+....+.|++++|++++|||++.|+++|+
T Consensus 247 ~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~ 324 (691)
T 1dar_A 247 RKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTP--EGEVVEIHPDPNGPLAALAFKIMADPYVGR 324 (691)
T ss_dssp HHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECS--SSCEEEECCCTTSCCEEEEEEEEEETTTEE
T ss_pred HHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCC--CccccccccCCCCCcEEEEEEEEEcCCCCc
Confidence 999999999999999999999999999999999999998655433221 122346778899999999999999999999
Q ss_pred EEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCc-ccccCCCC
Q 008294 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP-ILLERMDF 484 (571)
Q Consensus 406 i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~-~~l~~~~~ 484 (571)
++|+|||||+|++||.|++.++++.++|++|+.++|+++++|++|.|||||+|.|++++.+|||||+...+ ..++++.+
T Consensus 325 ~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~l~~~~~ 404 (691)
T 1dar_A 325 LTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEV 404 (691)
T ss_dssp EEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEEETTCCCCBCC----
T ss_pred EEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCccCCEEecCCCcccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888 88999999
Q ss_pred CCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEE
Q 008294 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVK 564 (571)
Q Consensus 485 ~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yk 564 (571)
+.|+++++|+|++++|++||.++|++|++|||+|++++|+||||++|+|||||||||+++||+++||+++++++|.|.||
T Consensus 405 ~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~yr 484 (691)
T 1dar_A 405 PEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYR 484 (691)
T ss_dssp ----------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCEEEBTTTBCCCBCCE
T ss_pred CCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhhCceEEEeCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEec
Q 008294 565 AFLKS 569 (571)
Q Consensus 565 e~~~~ 569 (571)
|||++
T Consensus 485 Eti~~ 489 (691)
T 1dar_A 485 ETITK 489 (691)
T ss_dssp EECSS
T ss_pred Eeecc
Confidence 99975
No 6
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=2.3e-78 Score=678.23 Aligned_cols=455 Identities=29% Similarity=0.501 Sum_probs=432.2
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.++.++|+|+||+|+|||||+++|+...+.....|.+..|.+++|+.+.|+++|+|+......+.+.++.++|||||||.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 45689999999999999999999998888777777777888999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccC
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (571)
+|..++.++++.+|++++|+|+.+|+..+++.+|+.+...++|+++|+||+|+. .+..++++++++.++ .+.+.++|+
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~-~~~~~~~Pi 163 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG-PILPIDLPL 163 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC-SEEECEEEE
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhC-CcceEEeee
Confidence 999999999999999999999999999999999999999999999999999999 888999999999999 888999999
Q ss_pred CCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHH
Q 008294 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (571)
Q Consensus 247 ~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~ 326 (571)
+.+.+|.+++|++.+++++|+. |. +...++|+++.+..+.+|+.++|.+++.|++++++|++|.+++.+++...++
T Consensus 164 ~~~~~~~g~~d~~~~~~~~~~~---g~-~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~ 239 (665)
T 2dy1_A 164 YEGGKWVGLIDVFHGKAYRYEN---GE-EREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFH 239 (665)
T ss_dssp EETTEEEEEEETTTTEEEEEET---TE-EEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred cCCCcccchhhhhhhheeecCC---Cc-eeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHH
Confidence 9999999999999999999976 33 6778899999999999999999999999999999999999999999999999
Q ss_pred hhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceE
Q 008294 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406 (571)
Q Consensus 327 ~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i 406 (571)
+.+..+.++|++++||++|.|+++||++|++++|+|.+. ++++|++++|||++.|+++|++
T Consensus 240 ~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~-------------------~~~~p~~~~V~k~~~d~~~G~~ 300 (665)
T 2dy1_A 240 EAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTER-------------------FGDGPPLAKVFKVQVDPFMGQV 300 (665)
T ss_dssp HHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHH-------------------HCSCSCEEEEEEEEEETTTEEE
T ss_pred HHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCcccc-------------------CCCCCeEEEEEEEEEcCCCCeE
Confidence 999999999999999999999999999999999999642 0368999999999999999999
Q ss_pred EEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCc--ccccCCCC
Q 008294 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP--ILLERMDF 484 (571)
Q Consensus 407 ~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~--~~l~~~~~ 484 (571)
+++|||||+|++||.|++.+ +.++|++|+.++|++++++++|.|||||+|.|++++.+|||||+.+.+ ..++++++
T Consensus 301 ~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~~ 378 (665)
T 2dy1_A 301 AYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARL 378 (665)
T ss_dssp EEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCCC
T ss_pred EEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecCCCccccccCCCCC
Confidence 99999999999999999887 678999999999999999999999999999999999999999998887 78999999
Q ss_pred CCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEE
Q 008294 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVK 564 (571)
Q Consensus 485 ~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yk 564 (571)
+.|+++++|+|++++|++||.++|++|++|||+|++++|+||||++|+|||||||||+++||+ +||+++++++|.|.||
T Consensus 379 ~~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~~v~v~~~~p~V~yr 457 (665)
T 2dy1_A 379 PDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPKVPYR 457 (665)
T ss_dssp CCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCCCCCE
T ss_pred CCceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HCCceEEEeCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred EEEec
Q 008294 565 AFLKS 569 (571)
Q Consensus 565 e~~~~ 569 (571)
|||++
T Consensus 458 Eti~~ 462 (665)
T 2dy1_A 458 ETIKK 462 (665)
T ss_dssp EEESS
T ss_pred Eeecc
Confidence 99975
No 7
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=6.2e-83 Score=712.02 Aligned_cols=425 Identities=27% Similarity=0.451 Sum_probs=391.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
++|||+|+||+|||||||+++|++.+|.+.+.|.++.|++++|++++|++||+|+.++..++.|++++|||||||||.||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCCC
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGA 248 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~ 248 (571)
..++.++++.+|++|+||||.+|++.||+.+|+++.++++|.++|+||||+..+++.++++++++.|+..++..+.
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~---- 156 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK---- 156 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC----
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876543221
Q ss_pred CCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhh
Q 008294 249 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKG 328 (571)
Q Consensus 249 ~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~ 328 (571)
+++...... . .+. ..++.|.+++.||++|++|+++..++..++...++..
T Consensus 157 -------~~~~~~~~~--------~-----~~~----------~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~ 206 (638)
T 3j25_A 157 -------VELYPNVCV--------T-----NFT----------ESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIR 206 (638)
T ss_dssp -------CCSCGGGCC--------C-----CCC----------CHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHH
T ss_pred -------eEeeccccc--------c-----ccc----------hhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhh
Confidence 111111100 0 001 1245688889999999999999999999999999999
Q ss_pred cccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEE
Q 008294 329 TIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTF 408 (571)
Q Consensus 329 ~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~ 408 (571)
+..+.++|++++||++|.|++.|||+|.+++|+|.+. ++.|+.++|||+..|+++|+++|
T Consensus 207 ~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~~--------------------~~~~~~~~Vfk~~~d~~~G~la~ 266 (638)
T 3j25_A 207 FQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHR--------------------GPSELCGNVFKIEYTKKRQRLAY 266 (638)
T ss_dssp HHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGGG--------------------SCCCCCBEEBCCCCCSTTCCCCB
T ss_pred hcccccccccccccccCCCchhHhhhhhccccCcccc--------------------hhhhhcceeeeeeeeccCceEEE
Confidence 9999999999999999999999999999999999752 36789999999999999999999
Q ss_pred EEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCCCCCce
Q 008294 409 VRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPV 488 (571)
Q Consensus 409 ~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~Pv 488 (571)
+|||||+|++||.|++...+ ++++.+++.++|++++++++|.|||||+|.| ..+.+|+|+++...+..+.++.+|.|+
T Consensus 267 ~RV~sG~l~~g~~v~~~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g-~~~~~~~tl~d~~~~~~~~~i~~p~Pv 344 (638)
T 3j25_A 267 IRLYSGVLHLRDSVRVSEKE-KIKVTEMYTSINGELCKIDRAYSGEIVILQN-EFLKLNSVLGDTKLLPQRKKIENPHPL 344 (638)
T ss_dssp CCBSSBCCCSCCCSSSCCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCCCS-SSCSSEECSSSSSSGGGCSCCCCCCCC
T ss_pred EEEEcCcccCCCccccccCc-ceeEEeeecccccccccccccccceEEEEec-cccccCceecCCCCcccccCccCCCcc
Confidence 99999999999999887654 5789999999999999999999999999988 567889999998888888899999999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEEEEEe
Q 008294 489 IKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVKAFLK 568 (571)
Q Consensus 489 ~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yke~~~ 568 (571)
++++|+|.++.|++||.++|++|++|||++++++++++||++|+|||||||||+++||+++||+|+++++|.|.|||+|+
T Consensus 345 ~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~ 424 (638)
T 3j25_A 345 LQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPL 424 (638)
T ss_dssp CCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCC
T ss_pred ceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 008294 569 S 569 (571)
Q Consensus 569 ~ 569 (571)
+
T Consensus 425 ~ 425 (638)
T 3j25_A 425 K 425 (638)
T ss_dssp S
T ss_pred c
Confidence 5
No 8
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=7.4e-78 Score=654.87 Aligned_cols=458 Identities=26% Similarity=0.409 Sum_probs=397.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeec----CcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHE----GTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~----g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTP 163 (571)
+++|+|+|+||+|+|||||+++|++.+|.+...|.+.. +.+++|+.+.|+++|+|+......+.++++.++|||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 35899999999999999999999999998887777654 45788999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeee
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (571)
||.+|..++.++++.+|++|+|+|+.+++..++..+|..+...++|+++|+||+|+..++..+.++++++.++....+++
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~~ 170 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPVT 170 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred ccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHH
Q 008294 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (571)
Q Consensus 244 ~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~ 323 (571)
+|++.+..|+|++|++.++++.|.... |......++++++.+. .+++.+.+. +++|+++.++..++...
T Consensus 171 ~pig~~~~f~gv~dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~~e~~~l~~~~~~~ 239 (528)
T 3tr5_A 171 WPIGMGKYFKGIYHLIEDAIYLYQPGK-HERVGESERIEGINNP--ELDKKLGDL--------ASELRNEIELVKGASHP 239 (528)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTS-SSSTTCSCEEECTTCH--HHHHHHTHH--------HHHHHHHHHHHHHHSCC
T ss_pred cccccCCceeEEEEeecCEEEEecCCC-CCcccccccccccchH--HHHHHHHHH--------HHHHhhhcchhhhhhhH
Confidence 999999999999999999999997643 3333333444433221 222222222 45555432222121111
Q ss_pred HHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEee--cC
Q 008294 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS--DP 401 (571)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--d~ 401 (571)
..++++..+.++|||++||++|.||++||++|.+++|+|.+...... .+.+ .+.||+++|||+.. ||
T Consensus 240 ~~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~----------~~~~-~~~~~~~~VFKi~~~~dp 308 (528)
T 3tr5_A 240 FEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSR----------LVKP-EEEKFSGFVFKIQANMDP 308 (528)
T ss_dssp CCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSS----------CBCT-TSSSCEEEEEEEEECCC-
T ss_pred HHHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccce----------eeCC-CcccceeEEEEEecccCc
Confidence 12666778899999999999999999999999999999987543211 1112 36899999999985 88
Q ss_pred -CCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCccccc
Q 008294 402 -FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLE 480 (571)
Q Consensus 402 -~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~ 480 (571)
++|+++|+|||||+|++||.|++.++++.+++++++.++|.++++|++|.||||+++.|++++.+|||||+ +.+..+.
T Consensus 309 ~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~-~~~~~~~ 387 (528)
T 3tr5_A 309 GHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQ-GERFKFT 387 (528)
T ss_dssp CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEES-SCCCCBC
T ss_pred cCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcC-CCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 4566778
Q ss_pred CCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCe
Q 008294 481 RMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKS 560 (571)
Q Consensus 481 ~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~ 560 (571)
++.++.|+++.+|+|+++.|.+||..||++|++|||+ ++..+++|||++|+|||||||||+++||+++||+++.+++|.
T Consensus 388 ~~~~~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey~v~v~~~~~~ 466 (528)
T 3tr5_A 388 GIPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESVN 466 (528)
T ss_dssp CCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHHCCCEEEECCS
T ss_pred CCCCCCCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHhCcEEEEecCc
Confidence 8888899999999999999999999999999999996 888899999999999999999999999999999999999999
Q ss_pred EEEEEEEec
Q 008294 561 TIVKAFLKS 569 (571)
Q Consensus 561 i~yke~~~~ 569 (571)
|.|++||..
T Consensus 467 v~~~~~i~~ 475 (528)
T 3tr5_A 467 VVTARWVIC 475 (528)
T ss_dssp CCEEEEEEC
T ss_pred eEEEEEecC
Confidence 999999975
No 9
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=1.4e-76 Score=645.47 Aligned_cols=458 Identities=25% Similarity=0.413 Sum_probs=369.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecC----cccccchhhhhhhceeEeeceEEEeecCeEEEEEcCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG----TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g----~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTP 163 (571)
++.++|+|+||+|+|||||+++|++..+.+...|.+..+ .+++|+.+.|+++|+|+......+.++++.++|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 357999999999999999999999877777666665443 5788999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeee
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (571)
||.+|..++.++++.+|++|+|+|+.+++..+++.+|..+...++|+++|+||+|+..++..++++++++.++....+++
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~ 170 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPIT 170 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred ccCCCCCCcceeeecccceeEEecCCCCCceeee-ecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHH
Q 008294 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAY-EDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (571)
Q Consensus 244 ~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~ 322 (571)
+|++....+.|++|++.+.++.|.... |..+.. .++|. +.+. .+.|. .+++++++|+++.++..+++.
T Consensus 171 ~pi~sa~~~~Gv~dl~~~~~~~~~~~~-g~~~~~~~~i~~-~~~~------~l~e~---~~~~~~~~~~e~~~l~~~~~~ 239 (529)
T 2h5e_A 171 WPIGCGKLFKGVYHLYKDETYLYQSGK-GHTIQEVRIVKG-LNNP------DLDAA---VGEDLAQQLRDELELVKGASN 239 (529)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTC-CSSCCCCCEECC-SSCH------HHHHH---HCHHHHHHHHHHHHHHHHHSC
T ss_pred cceecccCcceeeehhhhhHhhhcccC-CCcccccccCCC-CCHH------HHHHh---hCHHHHHHhhcccchhhhhhh
Confidence 999999999999999999999996421 321111 22221 1110 12222 267788888876444444333
Q ss_pred HHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEee---
Q 008294 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS--- 399 (571)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--- 399 (571)
..+++.+..+.++|||++||++|.||+.|||+|.+++|+|.++... ...+.++ ++||.++|||+..
T Consensus 240 ~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~----------~~~~~~~-~~~~~~~vfKi~~~~d 308 (529)
T 2h5e_A 240 EFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTD----------TRTVEAS-EDKFTGFVFKIQANMD 308 (529)
T ss_dssp CCCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBS----------SCEECTT-CCSCEEEEEEECSSCC
T ss_pred hhhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCccccc----------ccccCCC-CCCeEEEEEEEeeccC
Confidence 3445677788999999999999999999999999999999864320 0112232 6899999999975
Q ss_pred cCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccc
Q 008294 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILL 479 (571)
Q Consensus 400 d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l 479 (571)
++++|+++|+||+||+|++||.|++.+.++.++|++++.++|.++++|++|.|||||+|.|++++.+|||||+.+ +..+
T Consensus 309 ~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~-~~~~ 387 (529)
T 2h5e_A 309 PKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGE-MMKF 387 (529)
T ss_dssp SSSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEESSC-CCCB
T ss_pred cCCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEeecCC-cccc
Confidence 467999999999999999999999999999999999999999999999999999999999999999999999877 5678
Q ss_pred cCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecC
Q 008294 480 ERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPK 559 (571)
Q Consensus 480 ~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p 559 (571)
+++.++.|+++++|+|+++.|.+||.++|++|++||| +++.++++|||++|+|||||||||+++||+++||+++.+++|
T Consensus 388 ~~~~~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey~v~v~~~~~ 466 (529)
T 2h5e_A 388 TGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESV 466 (529)
T ss_dssp CCCEEECCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHSSCCEEEECC
T ss_pred CCCCCCCccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHhCcEEEEecC
Confidence 8888999999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEec
Q 008294 560 STIVKAFLKS 569 (571)
Q Consensus 560 ~i~yke~~~~ 569 (571)
.|.|||||..
T Consensus 467 ~v~y~eti~~ 476 (529)
T 2h5e_A 467 NVATARWVEC 476 (529)
T ss_dssp CCSEEEEEEC
T ss_pred ceeEEEEEcC
Confidence 9999999963
No 10
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=3.1e-75 Score=667.35 Aligned_cols=468 Identities=28% Similarity=0.403 Sum_probs=382.1
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-------------
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN------------- 153 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~------------- 153 (571)
.++++||+|+||+|+|||||+++|++.+|.+...+ ..+++++|+.++|+++|+|+......+.|.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~--~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~ 93 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK--AGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKT 93 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC--------------------CCCBCCCEEEEEEECCHHHHHHCSSCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCccccc--CCCceeecCchhhhhcceeEeeceeEEEecccccccccccccc
Confidence 34689999999999999999999998888766544 345688899999999999999998888876
Q ss_pred ---CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc---------
Q 008294 154 ---KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG--------- 221 (571)
Q Consensus 154 ---~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~--------- 221 (571)
++.++|||||||.+|..++.++++.+|++|+|||+.+|+..++..+|..+...++|+++|+||+|+..
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e 173 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKED 173 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred --cchhhhHHHHHHHhC-----------CcceeeeccCCCC----------------CCcceeeecccceeE---EecCC
Q 008294 222 --ANFFRTRDMIVTNLG-----------AKPLVVQLPVGAE----------------DNFKGVVDLVKMKAI---IWSGE 269 (571)
Q Consensus 222 --~~~~~~~~~i~~~l~-----------~~~~~~~~pi~~~----------------~~~~~~id~~~~~~~---~~~~~ 269 (571)
+++.+++++++..++ ..+.+.++|++.. .+|...++.+.++.| +|+..
T Consensus 174 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~ 253 (842)
T 1n0u_A 174 LYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPK 253 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETT
T ss_pred HHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCC
Confidence 335667777777752 4444556776554 345444555555555 56442
Q ss_pred CCCceeeeecccH-------HHHHHHHHHHHHHHHHHhhcCHHHHHHHhcC--CCCCHHHHH---HHHHhhcccCcceee
Q 008294 270 ELGAKFAYEDIPA-------NLQKMAQEYRSQMIETIVELDDEAMESYLEG--NEPDEETIK---KLIRKGTIAGSFVPV 337 (571)
Q Consensus 270 ~~g~~~~~~~~~~-------~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~--~~~~~~~l~---~~l~~~~~~~~~~Pv 337 (571)
|..+...++|+ .+.+.....+..|+|++++.|+++|++||++ ..++.+++. ..+++.+ .+.++|+
T Consensus 254 --~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~-~~~~~pv 330 (842)
T 1n0u_A 254 --TKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVV-MRKFLPA 330 (842)
T ss_dssp --TTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHH-HHHHSBH
T ss_pred --CCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHH-Hhhccch
Confidence 44455444443 5666778899999999999999999999986 688888887 7788777 6688898
Q ss_pred eeccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCccccccccCCCCCCeEEEEEEEeecCCCce-EEEEEE
Q 008294 338 LCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRV 411 (571)
Q Consensus 338 ~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~-i~~~rV 411 (571)
++.|||+|++++|+|.+++.+++. ..++......+.|++++|++++|||+..++++|+ ++|+||
T Consensus 331 ----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV 400 (842)
T 1n0u_A 331 ----------ADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRV 400 (842)
T ss_dssp ----------HHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEE
T ss_pred ----------HHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEE
Confidence 699999999999999865332110 0011222345678999999999999999999995 999999
Q ss_pred ecceeCCCCEE------EeCCCCc---eeecceEEEeccCceeecCeecCCCEEEEeCCCCcccc-ceecCCCCcccccC
Q 008294 412 YAGTLSAGSYV------LNANKGK---KERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITG-ETLCDADHPILLER 481 (571)
Q Consensus 412 ~sG~l~~gd~v------~~~~~~~---~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~G-dtl~~~~~~~~l~~ 481 (571)
|||+|++||.| +|.+.++ .+||++|+.++|+++++|++|.|||||+|.|++++.+| +|||+...+..+.+
T Consensus 401 ~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l~~ 480 (842)
T 1n0u_A 401 FAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKV 480 (842)
T ss_dssp EESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBCC
T ss_pred EeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCcccccc
Confidence 99999999999 4444555 68999999999999999999999999999999998554 69999888888999
Q ss_pred CCCC-CceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHh-CceEEEecC
Q 008294 482 MDFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KKLMLVHPK 559 (571)
Q Consensus 482 ~~~~-~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~-~vev~~~~p 559 (571)
+.++ .|+++++|+|+++.|++||.+||++|++|||+|++++| ||||++|+|||||||||+++||+++| |+++++++|
T Consensus 481 ~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~-etge~il~g~GelHLei~~~rL~~~f~~vev~~~~P 559 (842)
T 1n0u_A 481 MKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPP 559 (842)
T ss_dssp CCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEEC-TTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECC
T ss_pred CCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEc-CCCCEEEEeccHHHHHHHHHHHHHHhcCCceEecCc
Confidence 9988 69999999999999999999999999999999999998 89999999999999999999999999 999999999
Q ss_pred eEEEEEEEecC
Q 008294 560 STIVKAFLKSL 570 (571)
Q Consensus 560 ~i~yke~~~~~ 570 (571)
.|.|||||++.
T Consensus 560 ~V~yrETi~~~ 570 (842)
T 1n0u_A 560 VVAYRETVESE 570 (842)
T ss_dssp CCCCEEEESSC
T ss_pred EEEEEEeeccc
Confidence 99999999853
No 11
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=1.1e-63 Score=547.41 Aligned_cols=361 Identities=29% Similarity=0.489 Sum_probs=304.9
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-----CeEEEEEc
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----KHRINIID 161 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~i~liD 161 (571)
.+++|||+|+||+|+|||||+++|++.+|.+...+ .+.+++|+.+.|+++|+|+......+.|. .+.++|||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~---~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliD 79 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE---KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLID 79 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC--------------------------CCCCSEEEEEECTTSCEEEEEEEC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccc---ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEE
Confidence 35689999999999999999999998888665432 25688999999999999999998888775 37999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCccee
Q 008294 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (571)
Q Consensus 162 TPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 241 (571)
||||.+|..++.++++.+|++|+|||+++|++.|+..+|..+...++|+++|+||+|+..++..++.+++++.++..
T Consensus 80 TPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~--- 156 (600)
T 2ywe_A 80 TPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD--- 156 (600)
T ss_dssp CCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC---
T ss_pred CCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCC---
Confidence 99999999999999999999999999999999999999999999999999999999998877666666666654431
Q ss_pred eeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHH
Q 008294 242 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETI 321 (571)
Q Consensus 242 ~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l 321 (571)
T Consensus 157 -------------------------------------------------------------------------------- 156 (600)
T 2ywe_A 157 -------------------------------------------------------------------------------- 156 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecC
Q 008294 322 KKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP 401 (571)
Q Consensus 322 ~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~ 401 (571)
..+++++||++|.|+++|+++|.+++|+|.. ++++|+.++||+++.|+
T Consensus 157 ------------~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~--------------------~~~~pl~~lV~~~~~d~ 204 (600)
T 2ywe_A 157 ------------PEEAILASAKEGIGIEEILEAIVNRIPPPKG--------------------DPQKPLKALIFDSYYDP 204 (600)
T ss_dssp ------------GGGCEECBTTTTBSHHHHHHHHHHHSCCCCC--------------------CTTSCCEEEEEEEEEET
T ss_pred ------------cccEEEEEeecCCCchHHHHHHHHhcccccc--------------------cccCCcceeEEEEeecc
Confidence 0137889999999999999999999999864 24789999999999999
Q ss_pred CCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEe-C---CCCccccceecCCCCc-
Q 008294 402 FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHP- 476 (571)
Q Consensus 402 ~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~-g---l~~~~~Gdtl~~~~~~- 476 (571)
+.|.++++||++|+|++||.|++.++++.+++++++.+.+ +..+++++.|||++++. | ++++.+|||||..+.+
T Consensus 205 ~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~ 283 (600)
T 2ywe_A 205 YRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPT 283 (600)
T ss_dssp TTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCC
T ss_pred cceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEEeCCCcc
Confidence 9999999999999999999999999999999999999886 47899999999999884 5 5578999999998877
Q ss_pred -ccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEE-----ecHHHHHHHHHHHHhHh
Q 008294 477 -ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREF 550 (571)
Q Consensus 477 -~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g-----~GelhLev~~~rL~~~~ 550 (571)
.+++++.+++|+++++++|.+..|+++|.++|++|.+|||+|+++ +||+|++++| ||||||||+++||+++|
T Consensus 284 ~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~g~~~~~~G~lHlei~~erl~re~ 361 (600)
T 2ywe_A 284 KEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYE--PESSPALGMGFRVGFLGLLHMEIVQERLEREY 361 (600)
T ss_dssp SSCCSCCCCCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHHS
T ss_pred ccccCCCCCCCcEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEE--ECCccccccceEEEeccHHHHHHHHHHHHhhc
Confidence 478889999999999999999999999999999999999999998 4688866666 99999999999999999
Q ss_pred CceEEEecCeEEEEEEEe
Q 008294 551 KKLMLVHPKSTIVKAFLK 568 (571)
Q Consensus 551 ~vev~~~~p~i~yke~~~ 568 (571)
|+++.+++|+|.|||+|+
T Consensus 362 ~~~v~~~~P~V~yreti~ 379 (600)
T 2ywe_A 362 GVKIITTAPNVIYRVKKK 379 (600)
T ss_dssp CCCEEECCCEECEEEEET
T ss_pred CceEEEEeeeEEEEEEec
Confidence 999999999999999997
No 12
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=2.5e-62 Score=538.05 Aligned_cols=361 Identities=29% Similarity=0.423 Sum_probs=300.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-----CeEEEEEcC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----KHRINIIDT 162 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~i~liDT 162 (571)
+++|||+|+||+|+|||||+++|++.+|.+... ..+.+++|+++.|+++|+|+......+.|. ++.++||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~---~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDT 78 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR---EMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDT 78 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC-----------------------------CEEEEEEECTTSCEEEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccc---cccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEEC
Confidence 468999999999999999999999888876543 125688999999999999999999998885 389999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceee
Q 008294 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (571)
Q Consensus 163 PG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 242 (571)
|||.+|..++.++++.+|++|+|||+++|+..|+..+|..+...++|+++|+||+|+..++..++.+++.+.++...
T Consensus 79 PGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~--- 155 (599)
T 3cb4_D 79 PGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA--- 155 (599)
T ss_dssp CCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC---
T ss_pred CCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc---
Confidence 99999999999999999999999999999999999999999999999999999999988776666666666554310
Q ss_pred eccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHH
Q 008294 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (571)
Q Consensus 243 ~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~ 322 (571)
T Consensus 156 -------------------------------------------------------------------------------- 155 (599)
T 3cb4_D 156 -------------------------------------------------------------------------------- 155 (599)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCC
Q 008294 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPF 402 (571)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~ 402 (571)
.+++++||++|.|+++|+++|.+++|+|.. +++.|+.++||+++.|++
T Consensus 156 ------------~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~--------------------~~~~p~~alI~d~~~d~~ 203 (599)
T 3cb4_D 156 ------------TDAVRCSAKTGVGVQDVLERLVRDIPPPEG--------------------DPEGPLQALIIDSWFDNY 203 (599)
T ss_dssp ------------TTCEEECTTTCTTHHHHHHHHHHHSCCCCC--------------------CTTSCCEEEEEEEEEETT
T ss_pred ------------ceEEEeecccCCCchhHHHHHhhcCCCccc--------------------cccCCceeeeeecccccc
Confidence 137889999999999999999999999864 257899999999999999
Q ss_pred CceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE-eCC---CCccccceecCCCCc--
Q 008294 403 VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL-AGL---KDTITGETLCDADHP-- 476 (571)
Q Consensus 403 ~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i-~gl---~~~~~Gdtl~~~~~~-- 476 (571)
+|+++++||++|+|++||.|++.++++.+++.++..+.+. ..+++++.|||++++ .|+ +++.+|||||+.+.+
T Consensus 204 ~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~~ 282 (599)
T 3cb4_D 204 LGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAE 282 (599)
T ss_dssp TEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCCS
T ss_pred ccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccCccCCEeeecCCccc
Confidence 9999999999999999999999999999999999998865 789999999999988 455 468999999998877
Q ss_pred ccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEE-----ecHHHHHHHHHHHHhHhC
Q 008294 477 ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFK 551 (571)
Q Consensus 477 ~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g-----~GelhLev~~~rL~~~~~ 551 (571)
.+++++.++.|+++++++|.+..|.++|.++|.+|.++||+|+++ ++++|+++.| ||||||||+++||+++||
T Consensus 283 ~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~ 360 (599)
T 3cb4_D 283 KALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--PESSSALGFGFRCGFLGLLHMEIIQERLEREYD 360 (599)
T ss_dssp SCCTTCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHTSC
T ss_pred cccccccCCCcceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE--eccccccccceEEEeccHHHHHHHHHHHHHHcC
Confidence 678888999999999999999999999999999999999999998 5788866666 999999999999999999
Q ss_pred ceEEEecCeEEEEEEEec
Q 008294 552 KLMLVHPKSTIVKAFLKS 569 (571)
Q Consensus 552 vev~~~~p~i~yke~~~~ 569 (571)
+++.+++|+|.|||+|++
T Consensus 361 ~~~~~~~P~V~yreti~~ 378 (599)
T 3cb4_D 361 LDLITTAPTVVYEVETTS 378 (599)
T ss_dssp CCEEECCCEECEEEEESS
T ss_pred ceEEEEeeeEEEEEEecC
Confidence 999999999999999975
No 13
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=2.5e-39 Score=355.87 Aligned_cols=332 Identities=22% Similarity=0.254 Sum_probs=253.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------------- 152 (571)
+.++|+++||+|||||||+++|+......... +|+|.......+.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~------------------ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v 65 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREA------------------GGITQHIGATEIPMDVIEGICGDFLKKFSI 65 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccC------------------CceecccCeEEEeechhhhhcccccccccc
Confidence 35799999999999999999998443211111 12333322222221
Q ss_pred --cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHH
Q 008294 153 --NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM 230 (571)
Q Consensus 153 --~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 230 (571)
....++|||||||.+|...+.++++.+|++|+|+|+.+|++.|+.+.|..+...++|+++|+||+|+.......
T Consensus 66 ~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~---- 141 (594)
T 1g7s_A 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVH---- 141 (594)
T ss_dssp GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCC----
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccc----
Confidence 22369999999999999998889999999999999999999999999999999999999999999986421000
Q ss_pred HHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008294 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESY 310 (571)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~ 310 (571)
.+ .++++.+.......++.+.+.+.+.++++++.+
T Consensus 142 ----------------------------------------~~-----~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~g 176 (594)
T 1g7s_A 142 ----------------------------------------EG-----RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEG 176 (594)
T ss_dssp ----------------------------------------TT-----CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------------------------cC-----CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00 011222222234456677777777778888877
Q ss_pred hcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCe
Q 008294 311 LEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPF 390 (571)
Q Consensus 311 l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 390 (571)
++++.. .. ....+..+|++++||++|.|+++|+++|..++|+|.+. ...+++++|+
T Consensus 177 l~~e~~------~~---l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~---------------~l~~~~~~p~ 232 (594)
T 1g7s_A 177 FESERF------DR---VTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE---------------QLKIEEDSPA 232 (594)
T ss_dssp CEEEEG------GG---CSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG---------------GGEECTTSBC
T ss_pred cchHHH------HH---HHhccCcceEEEEeccCCCCchhHHHHHHhhccccchh---------------hhccccCCCc
Confidence 763211 00 11124678999999999999999999999998866531 1234568899
Q ss_pred EEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCcee--ecceEEEec--------cCceeecCeec--CCCEEEE
Q 008294 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKE--RIGRLLEMH--------ANSREDVKVAL--AGDIIAL 458 (571)
Q Consensus 391 ~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~--~i~~i~~~~--------g~~~~~v~~a~--aGdiv~i 458 (571)
.++|++++.+++.|.++++||++|+|++||.|++.+.+..+ +|++|+.+. +....++++|. +|+++++
T Consensus 233 ~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~ 312 (594)
T 1g7s_A 233 RGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVA 312 (594)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEEC
T ss_pred eeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEE
Confidence 99999999999999999999999999999999998877644 999999873 56678999998 9999999
Q ss_pred eCCCCccccceecCCCCcc--------cccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHH
Q 008294 459 AGLKDTITGETLCDADHPI--------LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKL 511 (571)
Q Consensus 459 ~gl~~~~~Gdtl~~~~~~~--------~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl 511 (571)
.||+++.+||+|+...++. .+..+.+..+.+.+.|++...++.+.|.++|+++
T Consensus 313 ~~l~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 313 PGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp SSCTTBCTTCEEEECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCCCCCCEEEecCCHHHHHHHHHHHHHhcccccccccEEEEeCCCCCHHHHHHHHHhC
Confidence 9999999999999876541 1333444567788999999999999999999997
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=6.9e-36 Score=319.38 Aligned_cols=279 Identities=19% Similarity=0.270 Sum_probs=218.7
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceee------------e-eecCcccccchhhhhhhceeEeeceEEEee
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG------------E-VHEGTATMDWMEQEQERGITITSAATTTYW 152 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g------------~-~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~ 152 (571)
+.+..++|+++||+|+|||||+++|++.++.+.... . -......+|..+.|+++|+|++.....+.+
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 345678999999999999999999998887654421 0 011235688899999999999999999999
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCc-------hhHHHHHHHHHhcCCC-eEEEEecCCccccch
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-------PQSETVWRQADKYGVP-RICFVNKMDRLGANF 224 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~-------~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~ 224 (571)
.++.++|||||||.+|...+..+++.+|++|+|||+.+|.. .|+++++..+...++| +++|+||+|+...++
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 99999999999999999999999999999999999999876 7999999999999999 789999999865432
Q ss_pred h-hhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcC
Q 008294 225 F-RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELD 303 (571)
Q Consensus 225 ~-~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~ 303 (571)
. ...+++.+
T Consensus 173 ~~~~~~~i~~---------------------------------------------------------------------- 182 (439)
T 3j2k_7 173 SNERYEECKE---------------------------------------------------------------------- 182 (439)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 1 11111111
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhh-cccCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCC
Q 008294 304 DEAMESYLEGNEPDEETIKKLIRKG-TIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKG 370 (571)
Q Consensus 304 ~~l~e~~l~~~~~~~~~l~~~l~~~-~~~~~~~Pv~~~Sa~~~~Gv~~------------Lld~i~~~lP~p~~~~~~~~ 370 (571)
++...+... ......+|++.+||++|.|+.+ |++.| +.+|.|..
T Consensus 183 ----------------~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l-~~i~~~~~------ 239 (439)
T 3j2k_7 183 ----------------KLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYL-DNLPNFNR------ 239 (439)
T ss_pred ----------------HHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHH-HhCCCCcc------
Confidence 000111000 0011246899999999999998 44444 44665532
Q ss_pred CCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCee
Q 008294 371 TDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVA 450 (571)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a 450 (571)
+.+.|+.+.|..++. +.|++..|||.+|+|++||.|...+.+...+|++|+.. .+++++|
T Consensus 240 --------------~~~~p~r~~v~~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~----~~~~~~a 299 (439)
T 3j2k_7 240 --------------SVDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSD----DTETDFV 299 (439)
T ss_pred --------------CCCCCeEEEEEEEEc--CCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEEC----CeEcCEe
Confidence 247899999999875 56999999999999999999999999988999998753 3789999
Q ss_pred cCCCEEEE--eCCC--CccccceecCCCCcc
Q 008294 451 LAGDIIAL--AGLK--DTITGETLCDADHPI 477 (571)
Q Consensus 451 ~aGdiv~i--~gl~--~~~~Gdtl~~~~~~~ 477 (571)
.|||+|++ .|++ ++..||+||+++++.
T Consensus 300 ~aG~~v~~~l~gi~~~~i~rG~vl~~~~~~~ 330 (439)
T 3j2k_7 300 APGENLKIRLKGIEEEEILPGFILCDPSNLC 330 (439)
T ss_pred cCCCcceEEEeccchhhcCCcEEecCCCCCC
Confidence 99999994 7776 488999999887653
No 15
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=4.4e-36 Score=318.36 Aligned_cols=273 Identities=26% Similarity=0.402 Sum_probs=216.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceee--eeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG--EVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g--~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+..++|+++||+|+|||||+++|+.... ..| ........+|..+.|+++|+|+......+.+.+..++|||||||
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAA---AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHH---HSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhh---hcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh
Confidence 4568999999999999999999985311 011 01112235788889999999999988888888899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
.+|...+..+++.+|++|+|+|+.++...|++++|..+...++| +++|+||+|+.... +.++.+.+
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~--~~~~~~~~----------- 152 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP--ELLDLVEM----------- 152 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH--HHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcH--HHHHHHHH-----------
Confidence 99999999999999999999999999999999999999999999 78899999987421 11111100
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
++.+.
T Consensus 153 ---------------------------------------------------------------------------~~~~~ 157 (405)
T 2c78_A 153 ---------------------------------------------------------------------------EVRDL 157 (405)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 01111
Q ss_pred HHhhcccCcceeeeeccccCCCC------------------hHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCC
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNKG------------------VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD 386 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~G------------------v~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~ 386 (571)
+.........+|++.+||++|.| +.+|++.|.+++|.|.. +.
T Consensus 158 l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~--------------------~~ 217 (405)
T 2c78_A 158 LNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVR--------------------DV 217 (405)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCC--------------------CC
T ss_pred HHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCC--------------------CC
Confidence 11111111235889999999987 88999999999998854 13
Q ss_pred CCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCC---ceeecceEEEeccCceeecCeecCCCEEEEe--CC
Q 008294 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALA--GL 461 (571)
Q Consensus 387 ~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~--gl 461 (571)
++|+.+.|.+++.++++|++++|||++|+|++||.|.+.+.+ ...+|++|.... .++++|.|||++++. |+
T Consensus 218 ~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~g~ 293 (405)
T 2c78_A 218 DKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR----KTLQEGIAGDNVGVLLRGV 293 (405)
T ss_dssp SSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETT----EEESEEETTCEEEEEESSC
T ss_pred CCCcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECC----cccCEEcCCCEEEEEECCC
Confidence 689999999999999999999999999999999999987766 578899886542 789999999999885 55
Q ss_pred --CCccccceecCCCC
Q 008294 462 --KDTITGETLCDADH 475 (571)
Q Consensus 462 --~~~~~Gdtl~~~~~ 475 (571)
+++..||+||+++.
T Consensus 294 ~~~~i~~G~~l~~~~~ 309 (405)
T 2c78_A 294 SREEVERGQVLAKPGS 309 (405)
T ss_dssp CTTTCCTTCEEESTTS
T ss_pred cHhhcCceEEEEcCCC
Confidence 56899999998764
No 16
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=2.3e-36 Score=319.57 Aligned_cols=272 Identities=26% Similarity=0.345 Sum_probs=213.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeee-eecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-VHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~-~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
...+|+++||+|+|||||+++|+..... .|. .....+.+|..+.|+++|+|+......+.+.++.++|||||||.+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~ 78 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAE---GGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD 78 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHH---TTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhh---cCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH
Confidence 3578999999999999999999853210 110 111123467777888999999998888888889999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHHHHHHhCCcceeeeccC
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (571)
|...+..+++.+|++|+|||+.+|...|++++|..+...++| +++|+||+|+.... +.++.+.
T Consensus 79 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~--~~~~~~~-------------- 142 (397)
T 1d2e_A 79 YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS--EMVELVE-------------- 142 (397)
T ss_dssp HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH--HHHHHHH--------------
T ss_pred HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH--HHHHHHH--------------
Confidence 999999999999999999999999999999999999999999 57899999986421 1111110
Q ss_pred CCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHH
Q 008294 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (571)
Q Consensus 247 ~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~ 326 (571)
+++.+.+.
T Consensus 143 ------------------------------------------------------------------------~~~~~~l~ 150 (397)
T 1d2e_A 143 ------------------------------------------------------------------------LEIRELLT 150 (397)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 01111111
Q ss_pred hhcccCcceeeeeccccCCCC----------hHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEE
Q 008294 327 KGTIAGSFVPVLCGSAFKNKG----------VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396 (571)
Q Consensus 327 ~~~~~~~~~Pv~~~Sa~~~~G----------v~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 396 (571)
........+|++++||++|.| +.+|+++|.+++|.|.. +.++|+.+.|++
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~--------------------~~~~p~~~~v~~ 210 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTR--------------------DLEKPFLLPVES 210 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCC--------------------CTTSCCEEECCE
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCC--------------------CCCCcEEEEEEE
Confidence 111112246899999999764 89999999999998864 136899999999
Q ss_pred EeecCCCceEEEEEEecceeCCCCEEEeCCCC--ceeecceEEEeccCceeecCeecCCCEEEEe--CC--CCcccccee
Q 008294 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIALA--GL--KDTITGETL 470 (571)
Q Consensus 397 ~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~--gl--~~~~~Gdtl 470 (571)
++.++++|++++|||++|+|++||.|.+.+.+ ...+|++|.... .++++|.|||++++. |+ +++..||+|
T Consensus 211 v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l 286 (397)
T 1d2e_A 211 VYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFH----KSLDRAEAGDNLGALVRGLKREDLRRGLVM 286 (397)
T ss_dssp EEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETT----EEESEEETTCEEEEEESSCCGGGCCTTCEE
T ss_pred EEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECC----cccCEecCCCceEEEecccchhccCceeEE
Confidence 99999999999999999999999999876654 677888886543 789999999999885 66 468899999
Q ss_pred cCCCC
Q 008294 471 CDADH 475 (571)
Q Consensus 471 ~~~~~ 475 (571)
|+++.
T Consensus 287 ~~~~~ 291 (397)
T 1d2e_A 287 AKPGS 291 (397)
T ss_dssp ESTTS
T ss_pred eCCCC
Confidence 98764
No 17
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=4.6e-36 Score=320.86 Aligned_cols=278 Identities=26% Similarity=0.317 Sum_probs=207.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceee--e-----eecC------cccccchhhhhhhceeEeeceEEEeecC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG--E-----VHEG------TATMDWMEQEQERGITITSAATTTYWNK 154 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g--~-----~~~g------~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 154 (571)
+..++|+++||+|+|||||+++|++.++.+.... . ...| .+.+|..++|+++|+|+......+.+.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 4578999999999999999999998765543211 0 0111 1457889999999999999988999999
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCC-eEEEEecCCccccchh-
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVP-RICFVNKMDRLGANFF- 225 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~- 225 (571)
+.++|||||||.+|...+..+++.+|++|+|||+.+| +..|+++++..+...++| +++|+||+|+...++.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 9999999999999999999999999999999999998 888999999999999985 7899999999763210
Q ss_pred hhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHH
Q 008294 226 RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDE 305 (571)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~ 305 (571)
+.++.+.
T Consensus 164 ~~~~~~~------------------------------------------------------------------------- 170 (435)
T 1jny_A 164 KRYKEIV------------------------------------------------------------------------- 170 (435)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 1111111
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCCCCCC
Q 008294 306 AMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMKGTDP 373 (571)
Q Consensus 306 l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~------------~Lld~i~~~lP~p~~~~~~~~~~~ 373 (571)
+++.+.+.........+|++.+||++|.|+. .|+++|.. +|+|...
T Consensus 171 -------------~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~-~~~p~~~-------- 228 (435)
T 1jny_A 171 -------------DQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPPKP-------- 228 (435)
T ss_dssp -------------HHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCCCCCG--------
T ss_pred -------------HHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc-cCCCCCC--------
Confidence 0111111111111113578999999999986 68888755 4545421
Q ss_pred CCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCC
Q 008294 374 ENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAG 453 (571)
Q Consensus 374 ~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aG 453 (571)
.+.|+.+.|..++..++.|++++|||++|+|++||.|++.+.+...+|++|... ..++++|.||
T Consensus 229 ------------~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~~~~a~aG 292 (435)
T 1jny_A 229 ------------VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETH----HTKMDKAEPG 292 (435)
T ss_dssp ------------GGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEET----TEEESEECTT
T ss_pred ------------CCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEEC----CcEEeEEcCC
Confidence 257888889999999999999999999999999999999998999999999653 3789999999
Q ss_pred CEEEE--eCC--CCccccceecCCCCc
Q 008294 454 DIIAL--AGL--KDTITGETLCDADHP 476 (571)
Q Consensus 454 div~i--~gl--~~~~~Gdtl~~~~~~ 476 (571)
|+|++ .|+ +++.+||+||+++.+
T Consensus 293 ~~v~~~l~g~~~~~i~~Gd~l~~~~~~ 319 (435)
T 1jny_A 293 DNIGFNVRGVEKKDIKRGDVVGHPNNP 319 (435)
T ss_dssp CEEEEEEESSCGGGCCTTCEEECTTSC
T ss_pred CEEEEEEecCCHHHcCCccEecCCCCC
Confidence 99998 354 568999999987644
No 18
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-35 Score=325.99 Aligned_cols=276 Identities=21% Similarity=0.244 Sum_probs=185.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCccee-------eeee------cCcccccchhhhhhhceeEeeceEEEee
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI-------GEVH------EGTATMDWMEQEQERGITITSAATTTYW 152 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~-------g~~~------~g~~~~d~~~~e~~~g~t~~~~~~~~~~ 152 (571)
..+..++|+++||+|+|||||+++|++.++.+... .... ....++|..+.|+++|+|+......+.+
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 45668999999999999999999999876654422 0111 1245788899999999999999999999
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcCCC-eEEEEecCCccccch
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVP-RICFVNKMDRLGANF 224 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~ 224 (571)
.++.++|||||||.+|...+..+++.+|++|+|||+.+|. ..|+++++..+...++| +|+|+||+|+..++.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCH
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccH
Confidence 9999999999999999999999999999999999999854 89999999999999998 788999999876331
Q ss_pred ---hhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhh
Q 008294 225 ---FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (571)
Q Consensus 225 ---~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 301 (571)
..+.+++.+.+.
T Consensus 333 ~~~~~i~~el~~~l~----------------------------------------------------------------- 347 (592)
T 3mca_A 333 DRFQEIKNIVSDFLI----------------------------------------------------------------- 347 (592)
T ss_dssp HHHHHHHHHHHHHHT-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 222222222210
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH--------------HHHHHHHHhCCCCCCCCC
Q 008294 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ--------------PLLDAVVDYLPSPLDLPA 367 (571)
Q Consensus 302 ~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~--------------~Lld~i~~~lP~p~~~~~ 367 (571)
........-+|++.+||++|.|+. .|++.|.+++|+..
T Consensus 348 ------------------------~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~~---- 399 (592)
T 3mca_A 348 ------------------------KMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEK---- 399 (592)
T ss_dssp ------------------------TTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCSC----
T ss_pred ------------------------HhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhccccc----
Confidence 000011123588999999999998 79999999887322
Q ss_pred CCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeec
Q 008294 368 MKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDV 447 (571)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v 447 (571)
+.+.|+.+.|..++.+ +.|++..|||.+|+|++||.|...+.+...+|++|... ..++
T Consensus 400 -----------------~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~----~~~~ 457 (592)
T 3mca_A 400 -----------------PYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRN----SDPS 457 (592)
T ss_dssp -----------------TTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECS----SSCS
T ss_pred -----------------cccccchheeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEc----CccC
Confidence 1478999999999999 89999999999999999999999999988899999853 3789
Q ss_pred C-eecCCCEEEE--eCCC--CccccceecCCCCc
Q 008294 448 K-VALAGDIIAL--AGLK--DTITGETLCDADHP 476 (571)
Q Consensus 448 ~-~a~aGdiv~i--~gl~--~~~~Gdtl~~~~~~ 476 (571)
+ +|.|||+|++ .|++ ++..||+||+++.+
T Consensus 458 ~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~~~ 491 (592)
T 3mca_A 458 STWAVAGDTVTLQLADIEVNQLRPGDILSNYENP 491 (592)
T ss_dssp CCEEETTCEEEEEESSSCGGGCCTTCEEECSSSC
T ss_pred cceecCCCEEEEEEccccccccceEEEeccCCCC
Confidence 9 9999999986 5765 48899999988764
No 19
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=1.3e-33 Score=305.69 Aligned_cols=281 Identities=20% Similarity=0.247 Sum_probs=204.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCccee------------ee-eecCcccccchhhhhhhceeEeeceEEEeecC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GE-VHEGTATMDWMEQEQERGITITSAATTTYWNK 154 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~------------g~-~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 154 (571)
+...+|+++|++|+|||||+++|++..+.+... |. -.....++|....|+++|+|+......+.+.+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 457899999999999999999999886654321 10 01224567888999999999999999999999
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCC-eEEEEecCCccccchhh
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFR 226 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~ 226 (571)
+.++|||||||.+|...+..+++.+|++|+|||+.+| +..|+++++..+...+++ +++|+||+|+...+..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~- 189 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ- 189 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH-
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH-
Confidence 9999999999999999999999999999999999988 678999999999988865 8899999998753211
Q ss_pred hHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHH
Q 008294 227 TRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEA 306 (571)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l 306 (571)
.++++.+
T Consensus 190 ~~~~i~~------------------------------------------------------------------------- 196 (483)
T 3p26_A 190 RFEEIKS------------------------------------------------------------------------- 196 (483)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 1111110
Q ss_pred HHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHH------------------HHHHHHHhCCC--CCCCC
Q 008294 307 MESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------------LLDAVVDYLPS--PLDLP 366 (571)
Q Consensus 307 ~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~------------------Lld~i~~~lP~--p~~~~ 366 (571)
++...+.........+|++.+||++|.|+++ +|+.+...+|. |..
T Consensus 197 -------------~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~-- 261 (483)
T 3p26_A 197 -------------KLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGI-- 261 (483)
T ss_dssp -------------HHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTC--
T ss_pred -------------HHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccc--
Confidence 1111111111112246899999999999873 44445444544 322
Q ss_pred CCCCCCCCCccccccccCCCCCCeEEEEEEEeecC---CCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEec---
Q 008294 367 AMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP---FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMH--- 440 (571)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~---~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~--- 440 (571)
+.+.|+.+.|..++..+ +.|++..|||.+|+|++||.|...+.+...+|++|....
T Consensus 262 ------------------~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~ 323 (483)
T 3p26_A 262 ------------------NKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQG 323 (483)
T ss_dssp ------------------CSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-
T ss_pred ------------------cCCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccc
Confidence 24789999999999876 489999999999999999999999999889999998763
Q ss_pred -cCceeecCeecCCCEEEE--eC--CCCccccceecCCCC
Q 008294 441 -ANSREDVKVALAGDIIAL--AG--LKDTITGETLCDADH 475 (571)
Q Consensus 441 -g~~~~~v~~a~aGdiv~i--~g--l~~~~~Gdtl~~~~~ 475 (571)
|..+.++++|.|||+|+| .+ .+++..||+||+++.
T Consensus 324 ~~~~~~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 324 QSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDY 363 (483)
T ss_dssp ----CCEESCEETTCEEEEEEESCCGGGCCTTCEEECTTC
T ss_pred cccccccccEECCCCEEEEEEEecccccCCceEEEEcCCC
Confidence 445689999999999999 34 367899999998876
No 20
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=1.4e-34 Score=302.13 Aligned_cols=242 Identities=13% Similarity=0.077 Sum_probs=198.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
++|+++||+|+|||||+++|+ ++|+|+......+.++++.++|||||||.+|..
T Consensus 22 ~~i~iiG~~d~GKSTL~~~L~--------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~ 75 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAANLG--------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLK 75 (370)
T ss_dssp EEEEEEESTTSSHHHHHHTTS--------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHH
T ss_pred CEEEEECCCCCCHHHHHHHHH--------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHH
Confidence 499999999999999999994 368899988888999999999999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEe-cCCccccch-hhhHHHHHHHhCCcceeeeccCC
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVN-KMDRLGANF-FRTRDMIVTNLGAKPLVVQLPVG 247 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviN-K~D~~~~~~-~~~~~~i~~~l~~~~~~~~~pi~ 247 (571)
.+..+++.+|++|+||| .+|+..|+++++..+...++|. ++|+| |+|+ ..+. .++.+++++.+..
T Consensus 76 ~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~---------- 143 (370)
T 2elf_A 76 SLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSG---------- 143 (370)
T ss_dssp HHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTT----------
T ss_pred HHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHh----------
Confidence 99999999999999999 9999999999999999999999 89999 9998 5321 2222333322211
Q ss_pred CCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHh
Q 008294 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (571)
Q Consensus 248 ~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~ 327 (571)
.
T Consensus 144 ------------------------------------------------------------------~------------- 144 (370)
T 2elf_A 144 ------------------------------------------------------------------T------------- 144 (370)
T ss_dssp ------------------------------------------------------------------S-------------
T ss_pred ------------------------------------------------------------------c-------------
Confidence 0
Q ss_pred hcccCcceeeee--ccccC---CCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCC
Q 008294 328 GTIAGSFVPVLC--GSAFK---NKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPF 402 (571)
Q Consensus 328 ~~~~~~~~Pv~~--~Sa~~---~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~ 402 (571)
....+|+++ +||++ |.|+++|++.|.+++|+|... .. .....|+.++|..++..++
T Consensus 145 ---~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~-----------~~-----~~~~~p~r~~v~~vf~~~~ 205 (370)
T 2elf_A 145 ---VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAE-----------NA-----ELNSLPARIFIDHAFNVTG 205 (370)
T ss_dssp ---TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHH-----------HH-----HGGGSCCEEEEEEEECCC-
T ss_pred ---CCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccC-----------Cc-----ccccccccccceeEEEcCC
Confidence 012368999 99999 999999999999998876210 00 0024567788888888899
Q ss_pred CceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEe--CC--CCccccceecC
Q 008294 403 VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA--GL--KDTITGETLCD 472 (571)
Q Consensus 403 ~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~--gl--~~~~~Gdtl~~ 472 (571)
+|++++|||++|+|++||.|++.+.+...+|++|... + +++++|.|||+|++. |+ +++.+||+||+
T Consensus 206 ~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~-~---~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 206 KGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSH-D---VDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp --CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEET-T---EEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred CceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEEC-C---CCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 9999999999999999999999999999999998653 2 889999999999995 54 46899999997
No 21
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=3.3e-34 Score=308.77 Aligned_cols=277 Identities=22% Similarity=0.308 Sum_probs=184.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCccee------------eee-ecCcccccchhhhhhhceeEeeceEEEeecC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTYWNK 154 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~------------g~~-~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 154 (571)
+..++|+++||+|+|||||+++|++.+|..... |.. ....+.+|..+.|+++|+|+......+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 557899999999999999999999887765321 110 1123567888999999999999988898999
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcCCC-eEEEEecCCccccchh-
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVP-RICFVNKMDRLGANFF- 225 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~- 225 (571)
..++|||||||.+|...+..+++.+|++|+|||+.+|. ..|+++++..+...++| +++|+||+|+...++.
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 99999999999999999999999999999999999986 37999999999999998 8899999999653211
Q ss_pred hhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHH
Q 008294 226 RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDE 305 (571)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~ 305 (571)
+.++.+.+
T Consensus 201 ~~~~~i~~------------------------------------------------------------------------ 208 (467)
T 1r5b_A 201 ERYKECVD------------------------------------------------------------------------ 208 (467)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111110
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhh-ccc-CcceeeeeccccCCCChHH--------------HHHHHHHhCCCCCCCCCCC
Q 008294 306 AMESYLEGNEPDEETIKKLIRKG-TIA-GSFVPVLCGSAFKNKGVQP--------------LLDAVVDYLPSPLDLPAMK 369 (571)
Q Consensus 306 l~e~~l~~~~~~~~~l~~~l~~~-~~~-~~~~Pv~~~Sa~~~~Gv~~--------------Lld~i~~~lP~p~~~~~~~ 369 (571)
++...+... ... ..-+|++.+||++|.|+.+ |++.| +.+|.|..
T Consensus 209 --------------e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l-~~i~~~~~----- 268 (467)
T 1r5b_A 209 --------------KLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYL-DSMTHLER----- 268 (467)
T ss_dssp --------------HHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHH-HHCCCCHH-----
T ss_pred --------------HHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHH-HhCCCCcC-----
Confidence 011111110 000 1135889999999999875 55555 44665532
Q ss_pred CCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCe
Q 008294 370 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 449 (571)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~ 449 (571)
+.++|+.+.|..++.+ .|+++.|||.+|+|++||.|...+.+...+|++|+.. ...++++
T Consensus 269 ---------------~~~~p~~~~v~~~~~~--~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~---~~~~~~~ 328 (467)
T 1r5b_A 269 ---------------KVNAPFIMPIASKYKD--LGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDE---ADEEISS 328 (467)
T ss_dssp ---------------HHTSCCEEECCEEEES--SSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECT---TCCEESE
T ss_pred ---------------CCCCCcEEEEEEEEeC--CCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEecc---CCcEeeE
Confidence 1368999999998764 6899999999999999999999888888889888653 2478999
Q ss_pred ecCCCEEEE--eC-CCCccccceecCCCCc
Q 008294 450 ALAGDIIAL--AG-LKDTITGETLCDADHP 476 (571)
Q Consensus 450 a~aGdiv~i--~g-l~~~~~Gdtl~~~~~~ 476 (571)
|.|||+|++ .| .+++..||+||+++++
T Consensus 329 a~aG~~v~i~l~g~~~~i~rG~vl~~~~~~ 358 (467)
T 1r5b_A 329 SICGDQVRLRVRGDDSDVQTGYVLTSTKNP 358 (467)
T ss_dssp EETTCEEEEEEESCCTTCCTTCEEECSSSC
T ss_pred EcCCCEEEEEEeccHhhCCceEEEeCCCCC
Confidence 999999999 56 5679999999987654
No 22
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=7e-34 Score=323.89 Aligned_cols=276 Identities=24% Similarity=0.336 Sum_probs=203.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeee-eecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-VHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~-~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
..+...+|+++||+|+|||||+++|+.... ..|. .....+.+|..+.|+++|+|+......+.+.+..++||||||
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~---~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPG 368 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLA---KTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPG 368 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHH---HHSCC---------------------CCSCEEEECSSCEEEEEECCC
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhc---cccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCC
Confidence 345678999999999999999999985321 0110 001112567788899999999999888888899999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHHHHHHhCCcceeee
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (571)
|.+|...+..+++.+|++|+|||+.+|...|+++++..+...++| +++|+||+|+.... +.++.+.+
T Consensus 369 HedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~--e~le~i~e---------- 436 (1289)
T 3avx_A 369 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDE--ELLELVEM---------- 436 (1289)
T ss_dssp HHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCH--HHHHHHHH----------
T ss_pred hHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccch--hhHHHHHH----------
Confidence 999999999999999999999999999999999999999999999 67899999987421 11111110
Q ss_pred ccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHH
Q 008294 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (571)
Q Consensus 244 ~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~ 323 (571)
++.+
T Consensus 437 ----------------------------------------------------------------------------Ei~e 440 (1289)
T 3avx_A 437 ----------------------------------------------------------------------------EVRE 440 (1289)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1111
Q ss_pred HHHhhcccCcceeeeeccccCC--------CChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEE
Q 008294 324 LIRKGTIAGSFVPVLCGSAFKN--------KGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAF 395 (571)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~--------~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 395 (571)
.+.........+|++.+||++| .|+.+|++.|.+++|.|.. +.++|+.+.|.
T Consensus 441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r--------------------~~d~Pfr~pId 500 (1289)
T 3avx_A 441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPER--------------------AIDKPFLLPIE 500 (1289)
T ss_dssp HHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCC--------------------GGGSCCEEECC
T ss_pred HHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCcc--------------------ccccceeeecc
Confidence 1111111123468999999999 5799999999999998754 13689999999
Q ss_pred EEeecCCCceEEEEEEecceeCCCCEEEeCCCC--ceeecceEEEeccCceeecCeecCCCEEEEe--CC--CCccccce
Q 008294 396 KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIALA--GL--KDTITGET 469 (571)
Q Consensus 396 k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~--gl--~~~~~Gdt 469 (571)
.++.++++|++++|||++|+|++||.|...+.+ ...+|++|... ..++++|.|||+|++. |+ +++..||+
T Consensus 501 ~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~----~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdV 576 (1289)
T 3avx_A 501 DVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQV 576 (1289)
T ss_dssp EEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECS----SCEESEEETTCEEEEEESSCCGGGCCTTCE
T ss_pred ccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeec----CceeeEEecCCcceeEeeecchhcCCcccE
Confidence 999999999999999999999999999987766 57789888543 2789999999999884 66 45889999
Q ss_pred ecCCCCc
Q 008294 470 LCDADHP 476 (571)
Q Consensus 470 l~~~~~~ 476 (571)
|++++.+
T Consensus 577 L~~~~~~ 583 (1289)
T 3avx_A 577 LAKPGTI 583 (1289)
T ss_dssp EESTTSC
T ss_pred EecCCCC
Confidence 9987643
No 23
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=4.2e-33 Score=297.95 Aligned_cols=278 Identities=22% Similarity=0.227 Sum_probs=208.3
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCccee--ee-----eecCc--------ccccchhhhhhhceeEeeceEEEe
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI--GE-----VHEGT--------ATMDWMEQEQERGITITSAATTTY 151 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~--g~-----~~~g~--------~~~d~~~~e~~~g~t~~~~~~~~~ 151 (571)
.+..++|+++||+|+|||||+++|++..+.+... .. ...|+ ..+|..+.|+++|+|++.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3456899999999999999999999876543221 00 01122 346788899999999999988898
Q ss_pred ecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHH
Q 008294 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDM 230 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~ 230 (571)
+.+..++|||||||.+|...+..+++.+|++|+|||+.+|...|+.+++..+...++| +++|+||+|+...+.+. +++
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~-~~~ 179 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERV-FES 179 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHH-HHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHH-HHH
Confidence 8999999999999999999999999999999999999999999999999999888886 78899999987532111 111
Q ss_pred HHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008294 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESY 310 (571)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~ 310 (571)
+.+
T Consensus 180 i~~----------------------------------------------------------------------------- 182 (434)
T 1zun_B 180 IKA----------------------------------------------------------------------------- 182 (434)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 110
Q ss_pred hcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCccc
Q 008294 311 LEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPEA 378 (571)
Q Consensus 311 l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~~~ 378 (571)
++.+.+.........+|++.+||++|.|+++ |++.| +.+|.|..
T Consensus 183 ---------~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l-~~i~~~~~-------------- 238 (434)
T 1zun_B 183 ---------DYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEIL-ETVEIASD-------------- 238 (434)
T ss_dssp ---------HHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHH-HHSCCTTC--------------
T ss_pred ---------HHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHH-hcCCCccc--------------
Confidence 0001111100001236889999999999986 55544 45665543
Q ss_pred cccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE
Q 008294 379 TLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL 458 (571)
Q Consensus 379 ~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i 458 (571)
+.+.|+.+.|..++...+.|+...|||.+|+|++||.|...+.++..+|++|.... .++++|.|||++++
T Consensus 239 ------~~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~----~~~~~a~aG~~v~~ 308 (434)
T 1zun_B 239 ------RNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE----GELEQAGPGQAVTL 308 (434)
T ss_dssp ------CCSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETT----EEESEECTTCEEEE
T ss_pred ------CCCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcC----cceeEecCCCEEEE
Confidence 13678999998888776778888999999999999999999988888999998765 57999999999999
Q ss_pred eCCC--CccccceecCCCCc
Q 008294 459 AGLK--DTITGETLCDADHP 476 (571)
Q Consensus 459 ~gl~--~~~~Gdtl~~~~~~ 476 (571)
...+ ++..||+||.++.+
T Consensus 309 ~l~~~~~i~~G~~l~~~~~~ 328 (434)
T 1zun_B 309 TMEDEIDISRGDLLVHADNV 328 (434)
T ss_dssp EESSCCCCCTTCEEEETTSC
T ss_pred EeCCccccCCccEEECCCCC
Confidence 6543 47899999987665
No 24
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=2.8e-33 Score=297.29 Aligned_cols=259 Identities=23% Similarity=0.343 Sum_probs=197.8
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-------------
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN------------- 153 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~------------- 153 (571)
.+..++|+++||+|+|||||+++|+ |. ..+..+.|.++|+|+......+.+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~---g~------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~ 71 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALT---GV------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPV 71 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHH---TC------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSB
T ss_pred CCCccEEEEECCCCCCHHHHHHHHh---CC------------ccccChhhhcCCcEEEEeeeeeeccccccccccccccc
Confidence 3557899999999999999999996 21 2355667888999998776654431
Q ss_pred ----------CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCC-CeEEEEecCCccc
Q 008294 154 ----------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDRLG 221 (571)
Q Consensus 154 ----------~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~-p~ivviNK~D~~~ 221 (571)
...++|||||||.+|...+.+++..+|++|+|||+.+|. ..|+.+++..+...++ |+++|+||+|+..
T Consensus 72 ~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 72 CPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp CTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred ccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCC
Confidence 178999999999999999999999999999999999998 8999999998887776 6788899999876
Q ss_pred cch-hhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHh
Q 008294 222 ANF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIV 300 (571)
Q Consensus 222 ~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 300 (571)
.+. .+.++++++
T Consensus 152 ~~~~~~~~~~i~~------------------------------------------------------------------- 164 (410)
T 1kk1_A 152 KEKALENYRQIKE------------------------------------------------------------------- 164 (410)
T ss_dssp HHHHHHHHHHHHH-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 431 111111111
Q ss_pred hcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccc
Q 008294 301 ELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATL 380 (571)
Q Consensus 301 ~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~ 380 (571)
|+.+. ....+|++++||++|.|+++|+++|.+.+|.|..
T Consensus 165 ---------~l~~~----------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~---------------- 203 (410)
T 1kk1_A 165 ---------FIEGT----------------VAENAPIIPISALHGANIDVLVKAIEDFIPTPKR---------------- 203 (410)
T ss_dssp ---------HHTTS----------------TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC----------------
T ss_pred ---------HHHhc----------------CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc----------------
Confidence 11110 0123589999999999999999999999998854
Q ss_pred cccCCCCCCeEEEEEEEee--------cCCCceEEEEEEecceeCCCCEEEeCCCCc------------eeecceEEEec
Q 008294 381 ERAASDDEPFAGLAFKIMS--------DPFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEMH 440 (571)
Q Consensus 381 ~~~~~~~~p~~~~V~k~~~--------d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~~~ 440 (571)
+.+.|+.+.|.+.+. ++++|.+++|||++|+|++||.|.+.+.++ ..+|.+|..
T Consensus 204 ----~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~-- 277 (410)
T 1kk1_A 204 ----DPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQA-- 277 (410)
T ss_dssp ----CTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE--
T ss_pred ----ccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEE--
Confidence 136788899988763 456899999999999999999999866432 345555553
Q ss_pred cCceeecCeecCCCEEEEe-CC------CCccccceecCCCCc
Q 008294 441 ANSREDVKVALAGDIIALA-GL------KDTITGETLCDADHP 476 (571)
Q Consensus 441 g~~~~~v~~a~aGdiv~i~-gl------~~~~~Gdtl~~~~~~ 476 (571)
...++++|.|||++++. ++ .++..|++||.++.+
T Consensus 278 --~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~~ 318 (410)
T 1kk1_A 278 --GGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKL 318 (410)
T ss_dssp --TTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCS
T ss_pred --CCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCCC
Confidence 24789999999998884 33 246789999987643
No 25
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=2.6e-33 Score=301.06 Aligned_cols=272 Identities=25% Similarity=0.293 Sum_probs=212.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCccee------------eee-ecCcccccchhhhhhhceeEeeceEEEeecCe
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTYWNKH 155 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~------------g~~-~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~ 155 (571)
...+|+++||+|+|||||+++|++..+.+... |.- .....++|..+.|+++|+|+......+.+.++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 46899999999999999999999775543321 110 01113467888999999999999999999999
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCch-------hHHHHHHHHHhcCCC-eEEEEecCCccccch---
Q 008294 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEP-------QSETVWRQADKYGVP-RICFVNKMDRLGANF--- 224 (571)
Q Consensus 156 ~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~-------~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~--- 224 (571)
.++|||||||.+|...+..+++.+|++|+|||+.+|... |+++++..+...++| +++|+||+|+...+.
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~ 165 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF 165 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHH
Confidence 999999999999999999999999999999999987655 899999999889997 788999999874221
Q ss_pred hhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCH
Q 008294 225 FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDD 304 (571)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~ 304 (571)
..+.+++++
T Consensus 166 ~~i~~~~~~----------------------------------------------------------------------- 174 (458)
T 1f60_A 166 QEIVKETSN----------------------------------------------------------------------- 174 (458)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 111111111
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------------------HHHHHHHHhCC
Q 008294 305 EAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------------------PLLDAVVDYLP 360 (571)
Q Consensus 305 ~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~------------------------~Lld~i~~~lP 360 (571)
.+.........+|++.+||++|.|+. .|+++|.. +|
T Consensus 175 -------------------~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~ 234 (458)
T 1f60_A 175 -------------------FIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IE 234 (458)
T ss_dssp -------------------HHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SC
T ss_pred -------------------HHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cC
Confidence 11111001112578888999999975 47777654 45
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEec
Q 008294 361 SPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMH 440 (571)
Q Consensus 361 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~ 440 (571)
.|.. ..+.|+.+.|..++.+++.|+++.|||.+|+++.||.|...+.+...+|.+|...
T Consensus 235 ~p~~--------------------~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~- 293 (458)
T 1f60_A 235 QPSR--------------------PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMH- 293 (458)
T ss_dssp CCCC--------------------CTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEET-
T ss_pred CCcc--------------------cCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEEC-
Confidence 4432 1478999999999999999999999999999999999999888888899998753
Q ss_pred cCceeecCeecCCCEEEE--eCC--CCccccceecCCCC
Q 008294 441 ANSREDVKVALAGDIIAL--AGL--KDTITGETLCDADH 475 (571)
Q Consensus 441 g~~~~~v~~a~aGdiv~i--~gl--~~~~~Gdtl~~~~~ 475 (571)
..++++|.|||+++| .|+ +++..|++|+.++.
T Consensus 294 ---~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 294 ---HEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKN 329 (458)
T ss_dssp ---TEECSCBCTTCEEEEEESSCCTTTSCTTCEEEETTS
T ss_pred ---CeEEEEEcCCCEEEEEEcCCcccccCceeEEecCCC
Confidence 268999999999988 466 46899999998764
No 26
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-33 Score=310.37 Aligned_cols=287 Identities=20% Similarity=0.243 Sum_probs=217.8
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCccee------------ee-eecCcccccchhhhhhhceeEeeceEEEeec
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GE-VHEGTATMDWMEQEQERGITITSAATTTYWN 153 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~------------g~-~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~ 153 (571)
.+...+|+++|++|+|||||+++|++..+.+... |. -.....++|....|+.+|+|+......+.+.
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3456799999999999999999999665544321 10 0122456788889999999999999999999
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCC-eEEEEecCCccccchh
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVP-RICFVNKMDRLGANFF 225 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~ 225 (571)
++.++|||||||.+|...+..+++.+|++|+|||+.+| +..|+++++..+...++| +++|+||+|+...+..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 99999999999999999999999999999999999986 578999999999999987 7888999998753211
Q ss_pred hhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHH
Q 008294 226 RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDE 305 (571)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~ 305 (571)
.++++.+
T Consensus 324 -~~~ei~~------------------------------------------------------------------------ 330 (611)
T 3izq_1 324 -RFEEIKS------------------------------------------------------------------------ 330 (611)
T ss_dssp -HHHHHHH------------------------------------------------------------------------
T ss_pred -HHHHHHH------------------------------------------------------------------------
Confidence 1111110
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHH---------------HHHHHHHhCCCCCCCCCCCC
Q 008294 306 AMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP---------------LLDAVVDYLPSPLDLPAMKG 370 (571)
Q Consensus 306 l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~---------------Lld~i~~~lP~p~~~~~~~~ 370 (571)
++...+.........+|++.+||++|.|+.+ |++.|....+.+....+
T Consensus 331 --------------~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p--- 393 (611)
T 3izq_1 331 --------------KLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENE--- 393 (611)
T ss_dssp --------------HHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSS---
T ss_pred --------------HHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCc---
Confidence 1111111111112246889999999999974 44444433221111000
Q ss_pred CCCCCccccccccCCCCCCeEEEEEEEeecC---CCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEec----cCc
Q 008294 371 TDPENPEATLERAASDDEPFAGLAFKIMSDP---FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMH----ANS 443 (571)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~---~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~----g~~ 443 (571)
....+.|+.+.|..++..+ +.|++..|||.+|+|++||.|...+.+...+|++|.... |..
T Consensus 394 ------------~~~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~ 461 (611)
T 3izq_1 394 ------------GINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTN 461 (611)
T ss_dssp ------------CCSCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSS
T ss_pred ------------ccccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEccccccccc
Confidence 0124789999999999877 589999999999999999999999999889999998663 556
Q ss_pred eeecCeecCCCEEEE--eC--CCCccccceecCCCC
Q 008294 444 REDVKVALAGDIIAL--AG--LKDTITGETLCDADH 475 (571)
Q Consensus 444 ~~~v~~a~aGdiv~i--~g--l~~~~~Gdtl~~~~~ 475 (571)
+.++++|.|||+|+| .+ .+++..||+||+++.
T Consensus 462 ~~~v~~A~aGd~v~l~l~~~~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 462 HEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDY 497 (611)
T ss_dssp CCCCCCEETTCEEEEEESSCCTTSCCTTCEEBCSTT
T ss_pred ccccceecCCCcceEEeeeccHhhCcceEEccCCCC
Confidence 789999999999999 44 467899999998876
No 27
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=5.5e-32 Score=287.09 Aligned_cols=258 Identities=22% Similarity=0.298 Sum_probs=187.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee---------------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--------------- 152 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~--------------- 152 (571)
+...+|+++||+|+|||||+++|. |. ..+....|.++|+|+........+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~---g~------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~ 70 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALT---GV------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRC 70 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHH---SC------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHh---CC------------ccccCcccccCCcEEEecccccccccccccccccccccc
Confidence 346899999999999999999996 21 234556788899998776554332
Q ss_pred c--------CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCC-CeEEEEecCCcccc
Q 008294 153 N--------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDRLGA 222 (571)
Q Consensus 153 ~--------~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~-p~ivviNK~D~~~~ 222 (571)
. ...++|||||||.+|...+.+++..+|++|+|||+.+|. ..|+.+++..+...++ |+++|+||+|+...
T Consensus 71 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 71 PNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDE 150 (408)
T ss_dssp TTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCT
T ss_pred cccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCH
Confidence 1 168999999999999999999999999999999999998 8999999988887776 68899999998764
Q ss_pred ch-hhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhh
Q 008294 223 NF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (571)
Q Consensus 223 ~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 301 (571)
+. ...++++++.+
T Consensus 151 ~~~~~~~~~i~~~l------------------------------------------------------------------ 164 (408)
T 1s0u_A 151 KQAEENYEQIKEFV------------------------------------------------------------------ 164 (408)
T ss_dssp TTTTTHHHHHHHHH------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH------------------------------------------------------------------
Confidence 31 11222222211
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccc
Q 008294 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLE 381 (571)
Q Consensus 302 ~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~ 381 (571)
.+ . ....+|++.+||++|.|+++|+++|.+.+|.|..
T Consensus 165 ----------~~--------------~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~----------------- 201 (408)
T 1s0u_A 165 ----------KG--------------T--IAENAPIIPISAHHEANIDVLLKAIQDFIPTPKR----------------- 201 (408)
T ss_dssp ----------TT--------------S--TTTTCCEEEC------CHHHHHHHHHHHSCCCCC-----------------
T ss_pred ----------hh--------------c--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc-----------------
Confidence 10 0 0123588999999999999999999999987753
Q ss_pred ccCCCCCCeEEEEEEEeec--------CCCceEEEEEEecceeCCCCEEEeCCCC------------ceeecceEEEecc
Q 008294 382 RAASDDEPFAGLAFKIMSD--------PFVGSLTFVRVYAGTLSAGSYVLNANKG------------KKERIGRLLEMHA 441 (571)
Q Consensus 382 ~~~~~~~p~~~~V~k~~~d--------~~~G~i~~~rV~sG~l~~gd~v~~~~~~------------~~~~i~~i~~~~g 441 (571)
+.+.|+.+.|.+.|.. ++.|.++.|||.+|+|++||.|...+.+ ...+|++|+..
T Consensus 202 ---~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~-- 276 (408)
T 1s0u_A 202 ---DPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAG-- 276 (408)
T ss_dssp ---CTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEET--
T ss_pred ---cCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEEC--
Confidence 1367899999888743 3478899999999999999999876532 14678888753
Q ss_pred CceeecCeecCCCEEEEeC-----C--CCccccceecCCCCc
Q 008294 442 NSREDVKVALAGDIIALAG-----L--KDTITGETLCDADHP 476 (571)
Q Consensus 442 ~~~~~v~~a~aGdiv~i~g-----l--~~~~~Gdtl~~~~~~ 476 (571)
..++++|.|||++++.. + +++..|++||.++.+
T Consensus 277 --~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~~ 316 (408)
T 1s0u_A 277 --NTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTL 316 (408)
T ss_dssp --TEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTCS
T ss_pred --CEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCCC
Confidence 37899999999999942 2 247789999987643
No 28
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=1.1e-31 Score=284.27 Aligned_cols=270 Identities=20% Similarity=0.258 Sum_probs=192.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-----cCeEEEEEcC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-----NKHRINIIDT 162 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-----~~~~i~liDT 162 (571)
+...+|+++|++|+|||||+++|+...... ..+... .+.......+..++.+.......+.+ ....++||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSK-KLGYAE--TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCS-SSEEEE--EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc-ccCccc--cceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 446799999999999999999997321111 001100 00000011112233332222111111 2378999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCC-CeEEEEecCCccccc-hhhhHHHHHHHhCCcc
Q 008294 163 PGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDRLGAN-FFRTRDMIVTNLGAKP 239 (571)
Q Consensus 163 PG~~~f~~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~-p~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~ 239 (571)
|||.+|...+..+++.+|++|+|+|+.++. ..|+.+++..+...++ |+++|+||+|+...+ ..+..+++++.+
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l---- 158 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFT---- 158 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHH----
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHH----
Confidence 999999999999999999999999999998 8999999999888776 889999999987643 112222222111
Q ss_pred eeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHH
Q 008294 240 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEE 319 (571)
Q Consensus 240 ~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~ 319 (571)
.+
T Consensus 159 ------------------------------------------------------------------------~~------ 160 (403)
T 3sjy_A 159 ------------------------------------------------------------------------KG------ 160 (403)
T ss_dssp ------------------------------------------------------------------------TT------
T ss_pred ------------------------------------------------------------------------Hh------
Confidence 00
Q ss_pred HHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEee
Q 008294 320 TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 399 (571)
Q Consensus 320 ~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 399 (571)
.....+|++.+||++|.|+++|+++|.+.+|.|.. +.+.|+.+.|.+.+.
T Consensus 161 ----------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~--------------------~~~~~~~~~v~~~~~ 210 (403)
T 3sjy_A 161 ----------TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYR--------------------DLSQKPVMLVIRSFD 210 (403)
T ss_dssp ----------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC--------------------CTTSCCEEEEEEEEC
T ss_pred ----------hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCC--------------------CCCCCcEEEEEEEEe
Confidence 01123589999999999999999999999988754 136789999998875
Q ss_pred --------cCCCceEEEEEEecceeCCCCEEEeCCCCc------------eeecceEEEeccCceeecCeecCCCEEEEe
Q 008294 400 --------DPFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEMHANSREDVKVALAGDIIALA 459 (571)
Q Consensus 400 --------d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~ 459 (571)
++++|.+++|||.+|++++||.|.+.+.++ ..+|++|... ..++++|.|||+|++.
T Consensus 211 v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~a~~G~~v~~~ 286 (403)
T 3sjy_A 211 VNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFG----DEEFKEAKPGGLVAIG 286 (403)
T ss_dssp CCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET----TEEESEECSSSCEEEE
T ss_pred ecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEEC----CEEcCEEeCCCEEEEE
Confidence 444899999999999999999999866543 3578888753 3889999999999983
Q ss_pred -----CC--CCccccceecCCCCc
Q 008294 460 -----GL--KDTITGETLCDADHP 476 (571)
Q Consensus 460 -----gl--~~~~~Gdtl~~~~~~ 476 (571)
++ +++..|++||.++.+
T Consensus 287 l~~~~~~~~~d~~~G~vl~~~~~~ 310 (403)
T 3sjy_A 287 TYLDPSLTKADNLLGSIITLADAE 310 (403)
T ss_dssp ESSCHHHHGGGTTTTCEEEETTCC
T ss_pred eccccccchhhhccccEEeCCCCC
Confidence 22 357789999987654
No 29
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.98 E-value=1.5e-32 Score=296.58 Aligned_cols=263 Identities=22% Similarity=0.297 Sum_probs=195.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
-+..+|+++||+|+|||||+++|+ +.. ....+|..+.|+++|+|+......+.++++.++|||||||.+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~---~~~--------~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~ 85 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLT---EIA--------STSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD 85 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHH---TTC----------------------------CCCEEEETTEEEEECCCSSHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHH---CCC--------cccccccccccccCccEEecceEEEEECCEEEEEEECCChHH
Confidence 346899999999999999999996 211 113456677899999999999888888999999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccc-hhhhHHHHHHHhCCcceeeeccC
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPV 246 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi 246 (571)
|...+..+++.+|++|+|||+.+|+..|+.+++..+...++|.++|+||+|+...+ .+.+.+++++
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~------------- 152 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKS------------- 152 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHH-------------
Confidence 99999999999999999999999999999999999999999999999999987532 1111111111
Q ss_pred CCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHH
Q 008294 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (571)
Q Consensus 247 ~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~ 326 (571)
.+.
T Consensus 153 -----------------------------------------------------------------------------~l~ 155 (482)
T 1wb1_A 153 -----------------------------------------------------------------------------ILQ 155 (482)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred -----------------------------------------------------------------------------HHh
Confidence 111
Q ss_pred hhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceE
Q 008294 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406 (571)
Q Consensus 327 ~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i 406 (571)
.. ......|++.+||++|.|+++|+++|.+.+|.|.... +.++|+.+.|...+..++.|++
T Consensus 156 ~~-~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~~------------------~~~~~~~~~v~~v~~~~g~G~v 216 (482)
T 1wb1_A 156 ST-HNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIR------------------NTESYFKMPLDHAFPIKGAGTV 216 (482)
T ss_dssp HS-SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHSCCCC------------------CSSSCCBCBCSCEECCSSCCCE
T ss_pred hh-cccccceEEEEECcCCCCHHHHHHHHHHhhcCccccc------------------cccccccccceeEEEecCCceE
Confidence 10 0001257899999999999999999999887552100 1356788888888888999999
Q ss_pred EEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Ccccccee-cCCC
Q 008294 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETL-CDAD 474 (571)
Q Consensus 407 ~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl-~~~~ 474 (571)
+.|+|.+|++++||.|...+.+...+|+.|... ..++++|.|||.+++ .|++ ++..||+| +.++
T Consensus 217 ~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~~ 285 (482)
T 1wb1_A 217 VTGTINKGIVKVGDELKVLPINMSTKVRSIQYF----KESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDT 285 (482)
T ss_dssp ECCCCCBSCCCSSEEECCTTTCCCEEECCBCGG----GSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTTC
T ss_pred EEEEEEEeEEeeCCEEEECCCCcEEEEeEEEEC----CeEeeEecCCCEEEEEecCCCHhhccccceEecCCC
Confidence 999999999999999999888878888888643 377999999999988 4764 47899999 5543
No 30
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.98 E-value=7.3e-34 Score=305.24 Aligned_cols=303 Identities=23% Similarity=0.250 Sum_probs=229.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+.++|+++||+|+|||||+++|+.... . ....+|+|++.....+.+++..++|||||||.+
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v--------~----------~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~ 63 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKV--------A----------SGEAGGITQHIGAYHVETENGMITFLDTPGHAA 63 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHH--------S----------BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCC--------c----------cccCCCeeEeEEEEEEEECCEEEEEEECCCcHH
Confidence 3568999999999999999999973211 0 011257788777777778888999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCC
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 247 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (571)
|...+.++++.+|++|+|||+.+|..+|+.++|..+...++|+++|+||+|+..++.+++.+++.+
T Consensus 64 f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~-------------- 129 (501)
T 1zo1_I 64 FTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQ-------------- 129 (501)
T ss_dssp CTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCC--------------
T ss_pred HHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHH--------------
Confidence 999999999999999999999999999999999999999999999999999976543221110000
Q ss_pred CCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHh
Q 008294 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (571)
Q Consensus 248 ~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~ 327 (571)
.+ +..+
T Consensus 130 -----------------------~~-------------------------------------------~~~~-------- 135 (501)
T 1zo1_I 130 -----------------------YG-------------------------------------------ILPE-------- 135 (501)
T ss_dssp -----------------------CC-------------------------------------------CCTT--------
T ss_pred -----------------------hh-------------------------------------------hhHH--------
Confidence 00 0000
Q ss_pred hcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEE
Q 008294 328 GTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 407 (571)
Q Consensus 328 ~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~ 407 (571)
..+..+|++++||++|.|+++|+++|......+. ...+++.|+.+.|++.+.+++.|.++
T Consensus 136 --~~~~~~~~v~vSAktG~gI~eLle~I~~~~~~~~------------------~~~~~~~~~~~~V~e~~~d~g~G~v~ 195 (501)
T 1zo1_I 136 --EWGGESQFVHVSAKAGTGIDELLDAILLQAEVLE------------------LKAVRKGMASGAVIESFLDKGRGPVA 195 (501)
T ss_dssp --CCSSSCEEEECCTTTCTTCTTHHHHTTTTCCCST------------------TTSCCCSBCEEEEEEEEECSSSSEEE
T ss_pred --HhCCCccEEEEeeeeccCcchhhhhhhhhhhhhc------------------cccccccccccceEEEEEeCCcEEEE
Confidence 0012368999999999999999999975421111 11235788999999999999999999
Q ss_pred EEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCc-cccceecCCCCcc---------
Q 008294 408 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHPI--------- 477 (571)
Q Consensus 408 ~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~Gdtl~~~~~~~--------- 477 (571)
+++|++|+|++||.|.+.+. ..+|..++..+ ..++++|.||+.+.+.|++++ ..||+++...++-
T Consensus 196 ~~~V~~Gtlk~Gd~v~~g~~--~~kVr~i~~~~---g~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~~~~a~~~~~~r 270 (501)
T 1zo1_I 196 TVLVREGTLHKGDIVLCGFE--YGRVRAMRNEL---GQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYR 270 (501)
T ss_dssp EEEEEESBCCTTCEEEEEBS--SCEEEEECCTT---TTSEEEECCSSCSSSEEECSCCCTTEEEEEECSSCTTBCSSCBT
T ss_pred EEEEEeeEEecCCEEEEccc--eeEEEEEEecC---CCcCcEeccCCcEEEeCCCCCCCCCCEEEecCCHHHHHHHHHHH
Confidence 99999999999999987542 23455444333 367999999999999999884 7899997443221
Q ss_pred ---------------cccCCC--C---CCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEE
Q 008294 478 ---------------LLERMD--F---PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFS 521 (571)
Q Consensus 478 ---------------~l~~~~--~---~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~ 521 (571)
.+..+. + ..+.+.+.|++..++..+.|.++|.+|..++..+.+-
T Consensus 271 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v~ 334 (501)
T 1zo1_I 271 QGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKII 334 (501)
T ss_dssp TCCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCCC
T ss_pred HHHHHHHHHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHHHHhhcccccceEEE
Confidence 122211 1 3456888899999999999999999998877766553
No 31
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.97 E-value=8.4e-33 Score=299.35 Aligned_cols=257 Identities=21% Similarity=0.261 Sum_probs=202.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~ 167 (571)
+.++|+++||+|+|||||+++|..... .....+|+|.+.....+.+ ++..++|||||||.+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~------------------~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~ 64 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV------------------AAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAA 64 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH------------------HHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc------------------ccccCCceeEEEeEEEEEeCCCCEEEEEECCChHH
Confidence 457899999999999999999973221 1112346676666666655 567899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCC
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 247 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (571)
|...+.++++.+|++|+|+|+.+|..+|+.++|..+...++|+++|+||+|+..++..+..+++.+. +.
T Consensus 65 f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~-~~---------- 133 (537)
T 3izy_P 65 FSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAY-DV---------- 133 (537)
T ss_dssp TTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHT-TS----------
T ss_pred HHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhh-hh----------
Confidence 9999999999999999999999999999999999999999999999999999765433322222210 00
Q ss_pred CCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHh
Q 008294 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (571)
Q Consensus 248 ~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~ 327 (571)
+.
T Consensus 134 --------------------------------------------------------------~~---------------- 135 (537)
T 3izy_P 134 --------------------------------------------------------------VC---------------- 135 (537)
T ss_dssp --------------------------------------------------------------CC----------------
T ss_pred --------------------------------------------------------------hH----------------
Confidence 00
Q ss_pred hcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEE
Q 008294 328 GTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 407 (571)
Q Consensus 328 ~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~ 407 (571)
...+..+|++++||++|.|+++|+++|...++.+.. ..+++.|+.+.|++.+.+++.|+++
T Consensus 136 -e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~------------------~~~~~~~~~~~V~e~~~~~g~G~V~ 196 (537)
T 3izy_P 136 -EDYGGDVQAVHVSALTGENMMALAEATIALAEMLEL------------------KADPTGAVEGTVIESFTDKGRGPVT 196 (537)
T ss_dssp -CCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCC------------------CCCSSSSEEEEEEEECCCTTCCCCE
T ss_pred -HhcCCCceEEEEECCCCCCchhHHHHHHHhhhcccc------------------cCCCCCCcceeEEEEEEeCCCceEE
Confidence 001223689999999999999999999988764422 1235789999999999999999999
Q ss_pred EEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCc-cccceecCCCCc
Q 008294 408 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP 476 (571)
Q Consensus 408 ~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~Gdtl~~~~~~ 476 (571)
.++|.+|+|++||.|.... ...+|+.++..+| .++++|.||++|+|.|++++ ..||+|+...++
T Consensus 197 ~g~V~~G~l~~Gd~v~~g~--~~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 197 TAIIQRGTLRKGSILVAGK--SWAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLPSAGDEILEVESE 261 (537)
T ss_dssp EEEEEEECCSSEEEECCSS--CCEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEEEEESSCCSCCSS
T ss_pred EEEEecCEEEcCCEEEeCC--ceEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCCCCCCEEEecCCh
Confidence 9999999999999985432 3357777765554 67999999999999999985 789999977554
No 32
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=99.87 E-value=1.5e-22 Score=203.19 Aligned_cols=109 Identities=18% Similarity=0.355 Sum_probs=79.4
Q ss_pred EEeCCCCccccceecCCCCcccccCCCCCCceEEEEEEeCCC----CC-----HHHHHHHHHHHHhhCCeeEEEEeCCCC
Q 008294 457 ALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTK----AD-----IDKMANGLIKLAQEDPSFHFSRDEEIN 527 (571)
Q Consensus 457 ~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~Pv~~~avep~~~----~d-----~~kl~~~L~kl~~eDpsl~~~~~~etg 527 (571)
+++|++++.+|||||+...+.+++++.+++|+++++|+|++. .| ..+|.++|.+|+++||+|+++.+++++
T Consensus 2 av~Gl~~~~iGDTl~~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~ 81 (332)
T 3e3x_A 2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPD 81 (332)
T ss_dssp ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTT
T ss_pred CccCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCC
Confidence 578999999999999999899999999999999999999987 55 789999999999999999999999999
Q ss_pred eEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEEEE
Q 008294 528 QTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVKAF 566 (571)
Q Consensus 528 e~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yke~ 566 (571)
+++|+|||||||||+++||+++ |+++.+++|+|+|||+
T Consensus 82 ~~~v~G~GELHLeIl~ErLrrE-g~ev~v~~P~V~YrEt 119 (332)
T 3e3x_A 82 KFRVSGRGELHLSILIENMRRE-GFELAVSRPEVIIXEE 119 (332)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH-TBCEEECCCEECCEEE
T ss_pred eEEEEeeCHHHHHHHHHHHHhc-CceEEEeCCEEEEEEE
Confidence 9999999999999999999999 9999999999999996
No 33
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.83 E-value=1.5e-19 Score=184.17 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=92.9
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-CeEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~liDTPG~ 165 (571)
+...-.|+++|++|+|||||+|+|+... ....+ ...++|.......+.++ +.+++||||||+
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~---~~i~s--------------~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~ 69 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTK---VSIIS--------------PKAGTTRMRVLGVKNIPNEAQIIFLDTPGI 69 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSC---CSCCC--------------SSSCCCCSCEEEEEEETTTEEEEEEECCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCC---ccccC--------------CCCCceeeEEEEEEecCCCCeEEEEECcCC
Confidence 3445689999999999999999997221 11111 12345665555666677 899999999999
Q ss_pred CCcH----------HHHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHhcCCCeEEEEecCCcc
Q 008294 166 VDFT----------LEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 166 ~~f~----------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~~~~p~ivviNK~D~~ 220 (571)
.++. ..+..+++.+|++++|+|+.++...++... +..+...++|+++|+||+|+.
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 70 YEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 7654 667788999999999999999999999888 677778899999999999986
No 34
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.82 E-value=8.8e-20 Score=185.08 Aligned_cols=117 Identities=21% Similarity=0.171 Sum_probs=90.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC-
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~- 167 (571)
+...|+++|++|+|||||+|+|+..... ..+.. .++|.......+.+++.+++||||||+.+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~---ivs~~--------------~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVA---PISPR--------------PQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS---CCCSS--------------SCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCcee---eecCC--------------CCceeEEEEEEEEeCCcEEEEecCccccch
Confidence 4568999999999999999999832211 11111 12233333334556789999999999987
Q ss_pred -------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCCeEEEEecCCcccc
Q 008294 168 -------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 -------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
|...+..+++.+|++++|+|++++....+..++..+... ++|+++|+||+|+...
T Consensus 69 ~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 69 MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY 132 (301)
T ss_dssp CSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred hhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCc
Confidence 567778889999999999999999888888888888877 8999999999998653
No 35
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.81 E-value=3e-20 Score=196.24 Aligned_cols=119 Identities=21% Similarity=0.230 Sum_probs=90.5
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCe-EEEEEcCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPG 164 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~i~liDTPG 164 (571)
+....++|+++|+.|+|||||+|+|+.... ...+...|+|.......+.+.+. .++||||||
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~-----------------~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG 92 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNV-----------------SIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPG 92 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC------------------------------CCCCEEEEEETTTEEEEEEECSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCC-----------------CccCCCCCeeeeeEEEEEEECCCCeEEEEECcC
Confidence 445678999999999999999999962111 11233467788888777877665 899999999
Q ss_pred CCCcH-------HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccc
Q 008294 165 HVDFT-------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 165 ~~~f~-------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (571)
+.+|. ..+..+++.+|++|+|+|+ +...++...+..+...++|+++|+||+|+...+
T Consensus 93 ~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 93 LDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp TTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred CCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 98873 3366788899999999999 778899999999999999999999999987653
No 36
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.81 E-value=3.1e-19 Score=162.70 Aligned_cols=116 Identities=20% Similarity=0.204 Sum_probs=87.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC--
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-- 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~-- 167 (571)
+++|+++|..|+|||||+++|+...... .+...++|.......+...+..+.+|||||+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 63 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAV-----------------VADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD 63 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC----------------------------CCEEEEEEETTEEEEEEECGGGCSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeee-----------------ccCCCCceecceEEEEEeCCceEEEEECCCCCCcc
Confidence 3689999999999999999997322110 111234455555566677888999999999987
Q ss_pred -----cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 168 -----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 -----f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
+...+...++.+|++++|+|+.++...........+...++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 64 KWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp SCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred chHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 4555667889999999999999988887777777787789999999999998653
No 37
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.80 E-value=3.5e-19 Score=176.55 Aligned_cols=111 Identities=21% Similarity=0.258 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
++|+++|++|+|||||+|+|. |.....+. ..|+|+......+.+++..++||||||+.++..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~---g~~~~v~~---------------~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~ 63 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALT---NANQRVGN---------------WPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVA 63 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHH---TTSEEEEE---------------CTTSSSEEEEEEEEETTEEEEEEECCCCSSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCCCccC---------------CCCceEEEEEEEEEECCeEEEEEeCCCcccccc
Confidence 689999999999999999996 43322222 146777777778888899999999999988754
Q ss_pred ----------HHHHHH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 171 ----------EVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ----------~~~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
....++ ..+|++|+|+|+++ ......++.++...++|+++|+||+|+..
T Consensus 64 ~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 64 NAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAE 124 (256)
T ss_dssp -----CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHH
T ss_pred cccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 233344 67999999999987 44555667778888999999999999764
No 38
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.80 E-value=1.2e-19 Score=168.63 Aligned_cols=118 Identities=33% Similarity=0.407 Sum_probs=92.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++.++|+++|.+|+|||||+++|+..... . . ...+++.......+.+++..+++|||||+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~-~---------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVT--E-Q---------------EAGGITQHIGAYQVTVNDKKITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSS--C-S---------------SCCSSSTTCCCCEEEETTEEEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccc--c-C---------------CCCceeEeeeEEEEEeCCceEEEEECCCCHH
Confidence 45679999999999999999999732111 0 0 0112333333445566788999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (571)
|......++..+|++++|+|+.++...++.+.+..+...++|+++|+||+|+...+
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~ 123 (178)
T 2lkc_A 68 FTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN 123 (178)
T ss_dssp SSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC
Confidence 87777777888999999999999888888888888888899999999999987643
No 39
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.80 E-value=2.1e-19 Score=173.65 Aligned_cols=122 Identities=17% Similarity=0.156 Sum_probs=89.5
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-ecCeEEEEEcCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTP 163 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~liDTP 163 (571)
.+..+.++|+++|++|+|||||+|+|+.... ... .....|+|.......+. +++..++|||||
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~--~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 87 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKR--LAF--------------ASKTPGRTQHINYFSVGPAAEPVAHLVDLP 87 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSS--SSC--------------TTCCCCSCCCEEEEEESCTTSCSEEEEECC
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCc--cee--------------ecCCCCcccceEEEEecCCCCCcEEEEcCC
Confidence 3445678999999999999999999962210 000 01113445555445554 567899999999
Q ss_pred CCCCc----------HHHHHHHHHh---cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 164 GHVDF----------TLEVERALRV---LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 164 G~~~f----------~~~~~~~l~~---~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
|+.+. ...+..+++. +|++++|+|+.++.......++..+...++|+++|+||+|+...
T Consensus 88 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 88 GYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp CCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCH
T ss_pred CCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCCh
Confidence 97542 3344455555 78899999999998888888888898899999999999998753
No 40
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=1.2e-18 Score=163.69 Aligned_cols=113 Identities=18% Similarity=0.075 Sum_probs=78.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|+.. ... ... .|+......+.+++..+.+|||||+.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~---~~~----------------~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN--EVV---HTS----------------PTIGSNVEEIVINNTRFLMWDIGGQES 72 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT--SCE---EEE----------------CCSCSSCEEEEETTEEEEEEECCC---
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC--CCC---cCc----------------CCCccceEEEEECCEEEEEEECCCCHh
Confidence 34679999999999999999999722 111 100 022222334556789999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
|......+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp -CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 988888899999999999999886443332 22333332 5899999999999864
No 41
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.79 E-value=8.4e-19 Score=161.53 Aligned_cols=114 Identities=19% Similarity=0.057 Sum_probs=82.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|+.... .. + ..|+......+.+++..+.+|||||+.+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~------------~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~~~ 63 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEV--VT------------T-------IPTIGFNVETVTYKNLKFQVWDLGGLTS 63 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSC--CC------------C-------CCCSSEEEEEEEETTEEEEEEEECCCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC--CC------------c-------CCcCccceEEEEECCEEEEEEECCCChh
Confidence 4467999999999999999999973211 00 0 0122222344566789999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHH-HHh---cCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQ-ADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~-~~~---~~~p~ivviNK~D~~~~ 222 (571)
|...+..+++.+|++++|+|+.+....... ..+.. +.. .++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 64 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp GGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 888888889999999999999876443322 22232 222 58999999999998653
No 42
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.79 E-value=3.4e-18 Score=156.45 Aligned_cols=109 Identities=17% Similarity=0.081 Sum_probs=79.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|++|+|||||+++|+...... +. -|+......+.+++..+++|||||+.+|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~--------------~~-------~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 60 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT--------------TI-------PTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC--------------CC-------CCSSCCEEEEECSSCEEEEEECCCCGGGHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc--------------cc-------CcCceeEEEEEECCEEEEEEEcCCChhhHHH
Confidence 79999999999999999997432110 00 0222223345567899999999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
+..+++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 61 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp HHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 88899999999999999875333222 22233322 3789999999999865
No 43
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.79 E-value=1.9e-18 Score=163.16 Aligned_cols=119 Identities=15% Similarity=0.252 Sum_probs=83.4
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
.+..+.++|+++|++|+|||||+++|+.... ... .....|.|.......+ +..+.+|||||
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~--------------~~~~~~~t~~~~~~~~---~~~~~l~Dt~G 78 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKN--LAR--------------TSSKPGKTQTLNFYII---NDELHFVDVPG 78 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-----------------------------CCEEEEEE---TTTEEEEECCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCC--ccc--------------cCCCCCceeeEEEEEE---CCcEEEEECCC
Confidence 3445678999999999999999999972210 000 0111233443333222 34799999999
Q ss_pred C----------CCcHHHHHHHHHhc---CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 165 H----------VDFTLEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 165 ~----------~~f~~~~~~~l~~~---D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
+ ..|...+...++.+ |++++|+|+.++.......++..+...++|+++|+||+|+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 79 YGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK 149 (195)
T ss_dssp BCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred CCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh
Confidence 4 34444556666666 9999999999988888888888888889999999999998654
No 44
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.78 E-value=2.9e-20 Score=184.76 Aligned_cols=203 Identities=13% Similarity=0.112 Sum_probs=124.8
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
..+..+|+++|++|+|||||+|+|+......... ...++|.......+.+.+..++||||||+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~ 82 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKL----------------GSQTLTKTCSKSQGSWGNREIVIIDTPDMF 82 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT----------------TSCCCCCSCEEEEEEETTEEEEEEECCGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCC----------------CCCceeeeeEEEEEEeCCCEEEEEECcCCC
Confidence 3456899999999999999999998332211100 011245666666777889999999999998
Q ss_pred CcH-----------HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc-----CCCeEEEEe-cCCccccchhhh--
Q 008294 167 DFT-----------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-----GVPRICFVN-KMDRLGANFFRT-- 227 (571)
Q Consensus 167 ~f~-----------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~ivviN-K~D~~~~~~~~~-- 227 (571)
++. ..+..+++.+|++|+|+|+.. +..+....+..+... +.|.++|+| |+|+...+..+.
T Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~ 161 (260)
T 2xtp_A 83 SWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMH 161 (260)
T ss_dssp GSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHH
Confidence 762 223336678999999999985 777777777777765 678888888 999986544332
Q ss_pred ------HHHHHHHhCCcceeee-ccC------CCCCCcceeeeccccee-EEecCCCCCceeeeecccH--HHHHHHHHH
Q 008294 228 ------RDMIVTNLGAKPLVVQ-LPV------GAEDNFKGVVDLVKMKA-IIWSGEELGAKFAYEDIPA--NLQKMAQEY 291 (571)
Q Consensus 228 ------~~~i~~~l~~~~~~~~-~pi------~~~~~~~~~id~~~~~~-~~~~~~~~g~~~~~~~~~~--~~~~~~~~~ 291 (571)
++++.+.++....++. +|+ +...-|..+++.+.++. ++|..+ ...+.|. ......+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 235 (260)
T 2xtp_A 162 DSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNG------LYSLIQRSKCGPVGSDER 235 (260)
T ss_dssp HCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCH------HHHHC-------------
T ss_pred hcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCCHH------HHHHHHHHHhhhhhHHHH
Confidence 2224444443211110 332 22334555556655544 444321 1223344 445566778
Q ss_pred HHHHHHHHhhcCHHHHHHHhc
Q 008294 292 RSQMIETIVELDDEAMESYLE 312 (571)
Q Consensus 292 ~~~l~e~~~~~~~~l~e~~l~ 312 (571)
+..+.|.+++.+++++++|.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ 256 (260)
T 2xtp_A 236 VKEFKQSLIKYMETQRSYTAL 256 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999965
No 45
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.78 E-value=7.7e-19 Score=175.93 Aligned_cols=112 Identities=21% Similarity=0.299 Sum_probs=85.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+|+|+ |.....+. ..|+|+......+.+.+..+.||||||+.++.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~---g~~~~v~~---------------~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLT---GSRQRVGN---------------WAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH---TTCEEEEE---------------CTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHh---CCCcccCC---------------CCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence 4689999999999999999996 33222222 24667777777788888999999999998875
Q ss_pred H---------HH-HHH--HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 170 L---------EV-ERA--LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~---------~~-~~~--l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
. .+ ... .+.+|++|+|+|+++ .........++...++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 65 TISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp C----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred cccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 1 11 122 268999999999987 34455566777788999999999999754
No 46
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.78 E-value=5.4e-19 Score=179.45 Aligned_cols=115 Identities=20% Similarity=0.219 Sum_probs=85.6
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC-C
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV-D 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~-~ 167 (571)
+..+|+++|++|+|||||+|+|+ |......+.. .++|.......+.+++.++++|||||+. .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~---g~~~~i~s~~--------------~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~ 69 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLL---GQKISITSRK--------------AQTTRHRIVGIHTEGAYQAIYVDTPGLHME 69 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHH---TCSEEECCCC--------------SSCCSSCEEEEEEETTEEEEEESSSSCCHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHH---CCCccccCCC--------------CCcceeeEEEEEEECCeeEEEEECcCCCcc
Confidence 35689999999999999999997 2221111111 1233333333456788999999999997 3
Q ss_pred cH--------HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 FT--------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~--------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.. ..+..+++.+|++++|+|+.+ +..++..+++.+...+.|.++|+||+|+..
T Consensus 70 ~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 70 EKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp HHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred chhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 22 223456678899999999988 888998888888888999999999999865
No 47
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.78 E-value=3.7e-18 Score=160.61 Aligned_cols=115 Identities=18% Similarity=0.132 Sum_probs=82.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|+....... + ..|+......+.+.+..+.||||||+.+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------------~-------~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNED-------------M-------IPTVGFNMRKITKGNVTIKLWDIGGQPR 79 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-------------C-------CCCCSEEEEEEEETTEEEEEEEECCSHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCc-------------c-------CCCCceeEEEEEeCCEEEEEEECCCCHh
Confidence 4568999999999999999999973221100 0 0122222334567889999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (571)
|...+..+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+...
T Consensus 80 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 988888899999999999999875333322 22333322 58999999999998653
No 48
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.78 E-value=6.6e-19 Score=188.13 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=89.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+..++|+++|++|+|||||+|+|+.. .... .....|+|.+.....+.+++..++||||||+.+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~---~~~~--------------~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~ 235 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGE---ERVI--------------VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRK 235 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS---TTEE--------------EC---------CCEEEEETTEEEEETTHHHHTC
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCC---Ccee--------------ecCCCCceeeeeEEEEEECCeEEEEEECCCcCc
Confidence 45689999999999999999999721 1110 112346787777778888899999999999843
Q ss_pred ----------cHHH-HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 168 ----------FTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 ----------f~~~-~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
|... ...+++.+|++++|+|+.++...++..++..+...++|+++|+||+|+...
T Consensus 236 ~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 236 KGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 301 (436)
T ss_dssp BTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred CccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCc
Confidence 3322 346889999999999999999999998888888899999999999998653
No 49
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.78 E-value=1.2e-18 Score=164.79 Aligned_cols=118 Identities=22% Similarity=0.155 Sum_probs=83.3
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+....++|+++|+.|+|||||+++|+.... ... ++ ..|+......+.+.+..++||||||+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~---~~~---------~~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~ 73 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQS---SSK---------HI-------TATVGYNVETFEKGRVAFTVFDMGGA 73 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----------------CC-------CCCSSEEEEEEEETTEEEEEEEECCS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCC---ccc---------cc-------ccccceeEEEEEeCCEEEEEEECCCC
Confidence 445678999999999999999999962111 000 00 01222233345678899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHhc-----------CCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY-----------GVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~-----------~~p~ivviNK~D~~~~ 222 (571)
.+|...+..+++.+|++|+|+|+.+....... ..+..+... ++|+++|+||+|+...
T Consensus 74 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 74 KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp GGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred HhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 99988888889999999999999986543333 333334333 8999999999998654
No 50
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.78 E-value=6.5e-18 Score=159.77 Aligned_cols=114 Identities=20% Similarity=0.121 Sum_probs=77.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|++|+|||||+++|+. +.... + ..|+......+.+++..+++|||||+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~--~~~~~------------~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL--GEIVT------------T-------IPTIGFNVETVEYKNICFTVWDVGGQDK 85 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS--SCCEE------------E-------EEETTEEEEEEEETTEEEEEEECC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh--CCccc------------c-------CCcCceeEEEEEECCEEEEEEECCCCHh
Confidence 4567899999999999999999961 11110 0 0122222344566889999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (571)
|...+..+++.+|++|+|+|+.+....... ..+..+.. .++|+++|+||+|+...
T Consensus 86 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp -CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 988888899999999999999876433322 22233322 37999999999998653
No 51
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=163.06 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=81.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|..|+|||||+++|+.... .... ...|+......+.+++..+.||||||+.+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~---~~~~----------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNA---QSQN----------------ILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGG---CCSS----------------CCCCSSEEEEEEECSSCEEEEEEECCSTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC---CCCC----------------cCCccceeEEEEEECCEEEEEEECCCCHH
Confidence 4467999999999999999999962210 0000 01122333345566789999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHH-HHh-----cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQ-ADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~-~~~-----~~~p~ivviNK~D~~~ 221 (571)
|...+..+++.+|++|+|+|+.+....... ..+.. +.. .++|+++|+||+|+..
T Consensus 80 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp TGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 988888899999999999999875322221 22233 332 4789999999999864
No 52
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.77 E-value=1.1e-17 Score=156.48 Aligned_cols=114 Identities=19% Similarity=0.189 Sum_probs=81.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|. +.... .. ....|.+ ...+.+++..+.+|||||+.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~---~~~~~--~~------------~~t~g~~----~~~~~~~~~~l~i~Dt~G~~~ 72 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLA---SEDIS--HI------------TPTQGFN----IKSVQSQGFKLNVWDIGGQRK 72 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHC---CSCCE--EE------------EEETTEE----EEEEEETTEEEEEEECSSCGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHh---cCCCC--cc------------cCcCCeE----EEEEEECCEEEEEEECCCCHH
Confidence 446899999999999999999996 21110 00 0011222 234455789999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHH----hcCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (571)
|...+..+++.+|++++|+|+++....... ..+..+. ..++|+++|+||+|+...
T Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 998889999999999999999875433322 2223222 257899999999998654
No 53
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.77 E-value=3.7e-18 Score=158.83 Aligned_cols=118 Identities=17% Similarity=0.128 Sum_probs=81.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|++|+|||||+++|+........ ....|.+.......+......+.||||||+.+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 73 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ----------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTS----------------CCCSCCSEEEEEEEETTEEEEEEEEECCCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcC----------------CCCceeEEEEEEEEECCEEEEEEEEeCCCChh
Confidence 34579999999999999999999832211000 00112223222233322356899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHhc---CCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY---GVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~---~~p~ivviNK~D~~~ 221 (571)
|.......++.+|++|+|+|+.+....... ..+..+... ++|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 988889999999999999999875443332 233344433 788999999999854
No 54
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.77 E-value=3e-18 Score=160.18 Aligned_cols=115 Identities=17% Similarity=0.053 Sum_probs=81.3
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+..+..+|+++|..|+|||||+++|+... .. .. ..|+......+.+++..+.+|||||+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~---~~----------------~~t~~~~~~~~~~~~~~~~i~Dt~G~ 75 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNE--VV---HT----------------SPTIGSNVEEIVINNTRFLMWDIGGQ 75 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTS--CE---EE----------------ECCSSSSCEEEEETTEEEEEEEESSS
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCC--CC---cc----------------CCcCceeeEEEEECCEEEEEEECCCC
Confidence 33456899999999999999999997321 10 00 00111222345557899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHH----hcCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
.+|...+..+++.+|++++|+|+++....... ..+..+. ..++|+++|+||+|+..
T Consensus 76 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 76 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp GGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 99888888889999999999999886443332 2333333 26899999999999865
No 55
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=4.1e-18 Score=160.93 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=85.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|.+|+|||||+++|+....... .....|.+.......+......+.||||||+.+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHN----------------ISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTT----------------CCCCSSEEEEEEEEECSSSEEEEEEEEECCSGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCC----------------cCCCcceeEEEEEEEeCCEEEEEEEEcCCCchh
Confidence 4568999999999999999999973221100 001134455444444445667899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
|...+...++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 85 FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 998889999999999999999876543333333 33333 3789999999999854
No 56
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.77 E-value=3.9e-18 Score=169.18 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=86.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+|+|+ |.....+. ..|+|+......+.+.+..+.||||||+.+|
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~---g~~~~~~~---------------~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~ 65 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALT---GTKQYVAN---------------WPGVTVEKKEGVFTYKGYTINLIDLPGTYSL 65 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHH---TTCEEEEE---------------CTTSCCEEEEEEEEETTEEEEEEECCCCSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHH---CCCCcccC---------------CCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 45789999999999999999996 32222222 1467887777788888899999999999887
Q ss_pred HH------HHHHHH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 169 TL------EVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~------~~~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.. .....+ ..+|++++|+|+++. ......+.++...++|+++|+||+|+..
T Consensus 66 ~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 66 GYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAK 124 (258)
T ss_dssp CSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred CCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 43 123333 478999999999873 3344566777788999999999999754
No 57
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=2.5e-18 Score=184.70 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=92.5
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC--
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG-- 164 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG-- 164 (571)
.....+|+++|++|+|||||+|+|+.. ..... ....|+|.......+.+++..++||||||
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~---~~~~~--------------~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~ 254 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGE---ERVIV--------------SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 254 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTS---TTEEE--------------CC------CTTSEEEEETTEEEEETTGGGTT
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCC---Ccccc--------------CCCCCeEEEEEEEEEEECCceEEEEECCCCC
Confidence 346789999999999999999999722 11111 11246677777777888899999999999
Q ss_pred --------CCCcHHH-HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 165 --------HVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 165 --------~~~f~~~-~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
++.|... ...+++.+|++|+|+|+.+++..++..++..+...++|+++|+||+|+...
T Consensus 255 ~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 255 KKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 321 (456)
T ss_dssp TBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred cCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 4555444 345889999999999999999999999999999999999999999998653
No 58
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.77 E-value=5.2e-18 Score=157.25 Aligned_cols=119 Identities=17% Similarity=0.131 Sum_probs=83.5
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.++..+|+++|+.|+|||||+++|+........ ....|.+.......+......+.||||||+.
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC----------------PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC----------------TTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 345789999999999999999999843221100 0011333333333333345689999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (571)
+|...+..+++.+|++|+|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp GTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 9999999999999999999999875443333332 2232 25789999999999854
No 59
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.77 E-value=5.9e-18 Score=155.36 Aligned_cols=116 Identities=15% Similarity=0.101 Sum_probs=82.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|+....... .+...|.+.......+...+..+++|||||+.+|.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 69 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEF----------------QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 69 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT----------------CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh
Confidence 57899999999999999999983211100 00112334444444444446789999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|+.+......... +..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 888999999999999999987543333322 233333 3688999999999854
No 60
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.77 E-value=9.2e-18 Score=154.56 Aligned_cols=112 Identities=21% Similarity=0.275 Sum_probs=77.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|. +.....+ ...|+|+......+.+++..+.+|||||+.+|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~---~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 64 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALT---GENVYIG---------------NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH---CCSSSCC--------------------CCCCCEEEEEETTEEEEEEECCCCSCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHh---CCCeecc---------------CCCCcceeeeEEEEEECCcEEEEEECCCcccCC
Confidence 4689999999999999999996 2111111 112445555555566778899999999998874
Q ss_pred ------HHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 170 ------LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ------~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.....+++ .+|++++|+|+.+. ......+..+...++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 65 ANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp SSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred CcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhcc
Confidence 22334444 78999999999762 2233344556667899999999999753
No 61
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.77 E-value=9e-18 Score=155.75 Aligned_cols=116 Identities=16% Similarity=0.073 Sum_probs=79.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC---eEEEEEcCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---HRINIIDTPG 164 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~---~~i~liDTPG 164 (571)
.+..+|+++|++|+|||||+++|+..... .+....+..+.....+.+.+ ..+++|||||
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G 65 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFG------------------KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTT------------------HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCC------------------CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCC
Confidence 34678999999999999999999732110 01111122222223344443 7899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh-----cCCC-eEEEEecCCccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK-----YGVP-RICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~-----~~~p-~ivviNK~D~~~ 221 (571)
+.+|...+..+++.+|++++|+|+++.........| ..+.. .+.| +++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 66 QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp CCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred CccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 999988889999999999999999875443322222 33333 2667 688999999864
No 62
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.77 E-value=3.1e-18 Score=171.31 Aligned_cols=112 Identities=18% Similarity=0.224 Sum_probs=87.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
.++|+++|++|+|||||+|+|+ |.....+. ..|+|+......+.+++..+++|||||+.+|.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~---g~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 64 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALT---GLRQHVGN---------------WPGVTVEKKEGIMEYREKEFLVVDLPGIYSLT 64 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH---TTCEEEEE---------------CTTSSCEEEEEEEEETTEEEEEEECCCCSCCC
T ss_pred eeEEEEECCCCCCHHHHHHHHh---CCCcccCC---------------CCCeEEEeeEEEEEECCceEEEEeCCCccccc
Confidence 5799999999999999999996 43333332 24667777778888899999999999999875
Q ss_pred H------HHHHHH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcC-CCeEEEEecCCccc
Q 008294 170 L------EVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYG-VPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~------~~~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~-~p~ivviNK~D~~~ 221 (571)
. ....++ ..+|++++|+|++++ ......+..+...+ +|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 65 AHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLK 123 (271)
T ss_dssp SSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHH
T ss_pred cCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCc
Confidence 4 233333 468999999999874 45556667777778 99999999999754
No 63
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.77 E-value=1.3e-18 Score=164.09 Aligned_cols=128 Identities=20% Similarity=0.127 Sum_probs=82.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceE-EEeecCeEEEEEcCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT-TTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~-~~~~~~~~i~liDTPG~~ 166 (571)
+...+|+++|++|+|||||++.+..... ....+ +......+.....|.+...... .+......++||||||+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~-~~~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVP-EGRKG-----EMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSC-GGGBC-----CCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcc-ccccc-----cccccccccccceeeeecccccccccCCceEEEEEeCCChH
Confidence 3467999999999999999976642111 00000 0000000000011122211111 222345689999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh---------cCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK---------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~---------~~~p~ivviNK~D~~~ 221 (571)
+|......+++.+|++|+|+|++++...+..+.+..+.. .++|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 86 FYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp SCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred HHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 999999999999999999999997655555554443332 5899999999999864
No 64
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.76 E-value=3.6e-18 Score=182.61 Aligned_cols=113 Identities=22% Similarity=0.286 Sum_probs=88.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC---
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD--- 167 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~--- 167 (571)
++|+++|.+|+|||||+|+|+... .. ..+...|+|.+.....+.|++..+++|||||+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~---~~--------------~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 64 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKK---KA--------------IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 64 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-------------------------------CCSEEEEEETTEEEEEEECTTTTSSGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---Cc--------------eecCCCCCccceeeEEEEECCeEEEEEECCCcccccc
Confidence 589999999999999999997211 10 0122457888888888899999999999999875
Q ss_pred ------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 168 ------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 168 ------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
+...+..+++.+|++++|+|+.++....+..+...++..++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 65 DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp GCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred chHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 24556778999999999999999999888888888888899999999999974
No 65
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.76 E-value=6.1e-18 Score=160.64 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=79.3
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.++..+|+++|++|+|||||+++|+..... .. .....|.+.......+......++||||||+.
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~--------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFR--EN--------------ISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC--------------------------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCC--cc--------------CCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence 345689999999999999999999732210 00 00112333333333333345679999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
+|...+..+++.+|++|+|+|+.++........| ..+.. .++|+++|+||+|+..
T Consensus 89 ~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred chhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 9999999999999999999999875444333333 23332 3799999999999854
No 66
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.76 E-value=6.8e-18 Score=155.07 Aligned_cols=117 Identities=16% Similarity=0.116 Sum_probs=82.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+++|+....... .....|.+.......+......+.+|||||+.+|
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 68 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPN----------------INPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 68 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTT----------------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCC----------------CCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh
Confidence 357899999999999999999973321100 0111244444444444334578999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.......++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 69 RALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred hcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 88888999999999999999875444433333 33433 3678899999999864
No 67
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.76 E-value=5.2e-18 Score=160.28 Aligned_cols=120 Identities=22% Similarity=0.195 Sum_probs=81.6
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+.+...+|+++|..|+|||||+++|+..... . . .....|.+.......+......+.||||||+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~--~------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFC--E--A------------CKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCC--c--C------------CCCccceeEEEEEEEECCeEEEEEEEeCCCc
Confidence 4455789999999999999999999621100 0 0 0011122333322222222368999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.+|...+...++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 86 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 99999999999999999999999875544433333 23332 4789999999999854
No 68
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=8.2e-18 Score=154.39 Aligned_cols=117 Identities=17% Similarity=0.193 Sum_probs=81.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|+.|+|||||+++|+........ ....|.+.......+......+.+|||||+.+|.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 66 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENK----------------EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA 66 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTC----------------CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEEEEEEECCEEEEEEEEECCCChhhh
Confidence 368999999999999999999833211000 0112333333333333345689999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~~ 222 (571)
..+...++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+...
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 67 SLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred hhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 8899999999999999999875443333322 23322 47899999999998653
No 69
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.76 E-value=6.2e-18 Score=160.86 Aligned_cols=118 Identities=18% Similarity=0.087 Sum_probs=82.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|++|+|||||+++|+........ ....|++.......+......+.||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAF----------------VSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCC----------------CCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc----------------CCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 45689999999999999999999732110000 00123344333333333457899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
|...+..+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 70 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 999899999999999999999875433333323 33333 4789999999999854
No 70
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.76 E-value=2.8e-18 Score=161.45 Aligned_cols=119 Identities=15% Similarity=0.029 Sum_probs=83.3
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.+...+|+++|.+|+|||||+++|+........ ....|.+.......+......++||||||+.
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAF----------------VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----------------CCCCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCc----------------CCceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence 345789999999999999999999733211000 0012334443333343445789999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh---cCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
+|...+..+++.+|++|+|+|+.+....... ..+..+.. .++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp SSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 9988888889999999999999875433322 22334443 3789999999999854
No 71
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.76 E-value=9.8e-18 Score=157.77 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=83.3
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+....++|+++|..|+|||||+++|+... ... .. ...|.|..... ...+..+.+|||||+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~-~~--------------~~~~~t~~~~~---~~~~~~~~i~Dt~G~ 78 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRK--IAF-VS--------------KTPGKTRSINF---YLVNSKYYFVDLPGY 78 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSC--CSC-CC--------------SSCCCCCCEEE---EEETTTEEEEECCCB
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCc--ccc-cc--------------CCCCCccCeEE---EEECCcEEEEECCCC
Confidence 44556799999999999999999997322 110 00 01233333222 223457899999994
Q ss_pred ----------CCcHHHHHHHHHhc---CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 166 ----------VDFTLEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ----------~~f~~~~~~~l~~~---D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
..|.......++.+ |++++|+|+..+.......++..+...++|+++|+||+|+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 79 GYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKM 148 (195)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred ccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCCh
Confidence 33444445555555 9999999999988888888888888889999999999998753
No 72
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.76 E-value=7.4e-18 Score=159.09 Aligned_cols=111 Identities=15% Similarity=0.071 Sum_probs=80.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|..... .. + ..|+......+.+++..+++|||||+.++.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~--~~------------~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 81 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRL--AT------------L-------QPTWHPTSEELAIGNIKFTTFDLGGHIQAR 81 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCC--CC------------C-------CCCCSCEEEEEEETTEEEEEEECCCSGGGT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC--Cc------------c-------ccCCCCCeEEEEECCEEEEEEECCCCHHHH
Confidence 45899999999999999999973211 10 0 112222334566678999999999999988
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHH----hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
.....+++.+|++++|+|+++........ .+..+. ..++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 77777889999999999998765433322 223332 25799999999999865
No 73
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=158.42 Aligned_cols=118 Identities=19% Similarity=0.132 Sum_probs=80.1
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 163 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTP 163 (571)
..+...+|+++|.+|+|||||+++|+.... .. +....++.......+.+++ ..+.|||||
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~--~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 86 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAF--SE----------------RQGSTIGVDFTMKTLEIQGKRVKLQIWDTA 86 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------CEEEEEEEETTEEEEEEEECCT
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCC--CC----------------CCCCCcceEEEEEEEEECCEEEEEEEEECC
Confidence 445678999999999999999999973211 00 0001111222223334444 689999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh---cCCCeEEEEecCCccc
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
|+.+|...+..+++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+..
T Consensus 87 G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 87 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp TCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 99999999999999999999999998643322222 2233333 4689999999999864
No 74
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.75 E-value=7.1e-18 Score=159.14 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=82.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
+...+|+++|++|+|||||+++|+....... ...+++.......+.+++ ..+.||||||+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 75 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES------------------YISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSC------------------CCCCSSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCC------------------CCCcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 4578999999999999999999983221100 011223333334444444 67999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~~ 222 (571)
.+|......+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+...
T Consensus 76 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 99998899999999999999999874432222222 33333 37899999999998643
No 75
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=4.3e-18 Score=160.51 Aligned_cols=118 Identities=18% Similarity=0.064 Sum_probs=84.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|+.|+|||||+++|+.......... ..|++.......+......+.||||||+.+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVS----------------TVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEE----------------EETTTEEEEEEEETTTTEEEEEECHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCC----------------CeeeEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 3468999999999999999999984332111110 113344444444455678899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh---cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
|.......++.+|++|+|+|+.+....... ..+..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 85 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp CHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 999999999999999999999864332222 22333333 4789999999999854
No 76
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.75 E-value=9.6e-18 Score=153.29 Aligned_cols=115 Identities=18% Similarity=0.098 Sum_probs=77.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|+........ ..+ .+ +.......+......+.+|||||+.+|.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----~~~-----------~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKY-----DPT-----------IE-DFYRKEIEVDSSPSVLEILDTAGTEQFA 65 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCC-----CTT-----------CC-EEEEEEEEETTEEEEEEEEECCCTTCCH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccC-----CCC-----------cc-eeEEEEEEECCEEEEEEEEECCCchhhH
Confidence 468999999999999999999832211000 000 01 1111122222234569999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHH----HhcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQA----DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~----~~~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|+.+....... ..+..+ ...++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence 9999999999999999999874332222 122222 234899999999999854
No 77
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=2.4e-17 Score=151.53 Aligned_cols=115 Identities=16% Similarity=0.112 Sum_probs=77.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|+.......... ..+.+.. ...........+.+|||||+.+|.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~----------------t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~ 65 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIP----------------TVEDTYR-QVISCDKSICTLQITDTTGSHQFP 65 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCC----------------CSCEEEE-EEEEETTEEEEEEEEECCSCSSCH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC----------------CccccEE-EEEEECCEEEEEEEEECCCchhhH
Confidence 46899999999999999999973211000000 0011111 111222234679999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhH-HHHHHHHHh-----cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~-----~~~p~ivviNK~D~~~ 221 (571)
.....+++.+|++++|+|+.+...... ...+..+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred HHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 999999999999999999986432222 223333333 3799999999999864
No 78
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.75 E-value=1.2e-17 Score=156.24 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=74.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+++|+........ .++. .+.......+......+.||||||+.+|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----~~t~------------~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 65 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEY-----DPTI------------EDSYRKQVVIDGETCLLDILDTAGQEEY 65 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCC-----CTTC------------CEEEEEEEEETTEEEEEEEEECCCC---
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCC-----CCCc------------hheEEEEEEECCcEEEEEEEECCCcHHH
Confidence 3568999999999999999999833211000 0000 0111111222223356888999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
......+++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 88899999999999999999874333332222 2222 24799999999999864
No 79
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.75 E-value=9.8e-18 Score=158.13 Aligned_cols=120 Identities=14% Similarity=0.050 Sum_probs=84.2
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
..++..+|+++|++|+|||||+++|+........ ....|.+.......+......+.||||||+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 84 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS----------------RTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC----------------CCCSSEEEEEEEEEETTEEEEEEEEEESCC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEEEEEEECCEEEEEEEEeCCCc
Confidence 3456789999999999999999999843221100 001233343333334345678999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh---cCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.+|...+..+++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 85 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp CTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 999888899999999999999998754332222 2333333 3789999999999864
No 80
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.75 E-value=2.7e-17 Score=150.56 Aligned_cols=115 Identities=17% Similarity=0.075 Sum_probs=77.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|+........ ..+ .+... .....+......+.+|||||+.+|.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~-----~~t-----------~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY-----DPT-----------IEDSY-RKQVEVDCQQCMLEILDTAGTEQFT 65 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSC-----CCC-----------SEEEE-EEEEESSSCEEEEEEEEECSSCSST
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCC-----CCC-----------ccceE-EEEEEECCEEEEEEEEECCChHHHH
Confidence 468999999999999999999842110000 000 01111 1112222345689999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHH----hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|+.+....... ..+..+. ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 8899999999999999999864322221 1222222 34899999999999864
No 81
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.75 E-value=1.2e-17 Score=155.96 Aligned_cols=118 Identities=16% Similarity=0.144 Sum_probs=78.7
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
..+..+|+++|++|+|||||+++|+........ .. ..+... .....+......+.+|||||+.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~-----~~-----------t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY-----DP-----------TIEDSY-LKHTEIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC-----CT-----------TCCEEE-EEEEEETTEEEEEEEEECCSCG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC-----CC-----------Ccccee-EEEEEeCCcEEEEEEEECCCch
Confidence 345689999999999999999999832111000 00 011111 1122222233557789999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHH-----HHHHHHHhcCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-----TVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-----~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+|......+++.+|++++|+|+.+....... .+.......++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp GGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 9988888999999999999999875322222 222223346899999999999864
No 82
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.75 E-value=1.3e-17 Score=154.85 Aligned_cols=117 Identities=19% Similarity=0.187 Sum_probs=79.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTP 163 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTP 163 (571)
+..+..+|+++|+.|+|||||+++|+....... ...+ .+.... ..+.++ ...+.|||||
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~~t-----------~~~~~~---~~~~~~~~~~~~~~~Dt~ 65 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSD-----YDPT-----------IEDSYT---KICSVDGIPARLDILDTA 65 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS-----CCTT-----------CCEEEE---EEEEETTEEEEEEEEECC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccc-----cCCC-----------cCceEE---EEEEECCEEEEEEEEECC
Confidence 345578999999999999999999984321100 0000 111111 223333 3678999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHH----HHHHhcCCCeEEEEecCCccc
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVW----RQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~----~~~~~~~~p~ivviNK~D~~~ 221 (571)
|+.+|.......++.+|++++|+|+.+....... ..+ ......++|+++|+||+|+..
T Consensus 66 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 66 GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp CTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred CchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999988888899999999999999874322222 112 222345889999999999864
No 83
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.75 E-value=5e-18 Score=159.08 Aligned_cols=114 Identities=21% Similarity=0.153 Sum_probs=81.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|+... ... + ..|+......+.+++..+++|||||+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-----~~~---------~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~~~ 74 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-----VDT---------I-------SPTLGFNIKTLEHRGFKLNIWDVGGQKS 74 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-----CSS---------C-------CCCSSEEEEEEEETTEEEEEEEECCSHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-----CCc---------c-------cccCccceEEEEECCEEEEEEECCCCHh
Confidence 346799999999999999999996211 000 0 0022222334555789999999999998
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (571)
|...+...++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 887778888999999999999876443332 23333332 47999999999998653
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.75 E-value=8.9e-18 Score=159.68 Aligned_cols=112 Identities=18% Similarity=0.125 Sum_probs=76.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+++|.. +... .+ ..|+......+.+++..+++|||||+.+|
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~--~~~~------------~~-------~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD--DRLG------------QH-------VPTLHPTSEELTIAGMTFTTFDLGGHIQA 82 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC--C-------------------------CCCCCSCEEEEETTEEEEEEEECC----
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc--CCCC------------cc-------CCCCCceeEEEEECCEEEEEEECCCcHhh
Confidence 346899999999999999999951 1100 00 01222233456667899999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHH----hcCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
...+..+++.+|++++|+|+++........ .+..+. ..++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 877778899999999999998754333222 223232 25799999999999865
No 85
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.75 E-value=1.5e-17 Score=156.24 Aligned_cols=118 Identities=17% Similarity=0.060 Sum_probs=80.4
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-----------Ce
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----------KH 155 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-----------~~ 155 (571)
.++..+|+++|++|+|||||+++|+......... ...|.+... ...+... ..
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 70 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFI----------------TTVGIDFRE-KRVVYRANGPDGAVGRGQRI 70 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC----------------CCCSEEEEE-EEEEECTTSCCCSSCCCEEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcc----------------cccceeeee-EEEEEecCCcccccccCcEE
Confidence 3457899999999999999999998322110000 001111110 1112222 46
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh----cCCCeEEEEecCCccc
Q 008294 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 156 ~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
.++||||||+.+|......+++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 71 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED 141 (195)
T ss_dssp EEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred EEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 8999999999999999999999999999999998754433322 2233332 5799999999999854
No 86
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.75 E-value=1.5e-17 Score=154.51 Aligned_cols=114 Identities=16% Similarity=0.147 Sum_probs=80.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++|...... .. . ...|+|.......+.+++..+.+|||||+.++.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~--~~-~--------------~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 66 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAA--IV-T--------------DIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 66 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCS--CC-C--------------SSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc--ee-e--------------CCCCceeceeeEEEEECCeEEEEEECCCcccch
Confidence 357999999999999999999722110 00 0 012344444445566678889999999997642
Q ss_pred H--------HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc---CCCeEEEEecCCcc
Q 008294 170 L--------EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY---GVPRICFVNKMDRL 220 (571)
Q Consensus 170 ~--------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~---~~p~ivviNK~D~~ 220 (571)
. ....+++.+|++++|+|+++.........+..+... ++|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 67 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 1 123468899999999999887665555555544433 68999999999974
No 87
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.74 E-value=4e-18 Score=158.30 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=82.8
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG 164 (571)
.+...+|+++|++|+|||||+++|+.. ... .+...+++.......+.+++ ..+++|||||
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~---~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G 67 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADN---TFS---------------GSYITTIGVDFKIRTVEINGEKVKLQIWDTAG 67 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSC---C------------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcC---CCC---------------CccCCCceeEEEEEEEEECCEEEEEEEEcCCC
Confidence 345789999999999999999999611 100 01112334444444455555 7899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh--cCCCeEEEEecCCcccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
+.++......+++.+|++++|+|+.++........| ..+.. .++|+++|+||+|+...
T Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 68 QERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp GGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred chhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 999888888889999999999999875443333322 23332 25899999999997643
No 88
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=3.3e-18 Score=159.61 Aligned_cols=113 Identities=20% Similarity=0.135 Sum_probs=77.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|+. +.. ... ..|+......+.+++..+.+|||||+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~--~~~---~~~----------------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI--GEV---VTT----------------KPTIGFNVETLSYKNLKLNVWDLGGQTS 74 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC--SEE---EEE----------------CSSTTCCEEEEEETTEEEEEEEEC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc--CCc---Ccc----------------CCcCccceEEEEECCEEEEEEECCCCHh
Confidence 4568999999999999999999951 111 000 0122222334556789999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHH----hcCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
|...+..+++.+|++++|+|+.+....... ..+..+. ..++|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 75 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 888788888999999999999876443332 2333333 35789999999999865
No 89
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.74 E-value=2.7e-18 Score=161.48 Aligned_cols=114 Identities=17% Similarity=0.078 Sum_probs=80.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|.. +... . +. .|+......+.+++..+++|||||+.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~---~---------~~-------~t~~~~~~~~~~~~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL--GDVV---T---------TV-------PTVGVNLETLQYKNISFEVWDLGGQTG 78 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC--SCCE---E---------EC-------SSTTCCEEEEEETTEEEEEEEECCSSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc--CCCC---C---------cC-------CCCceEEEEEEECCEEEEEEECCCCHh
Confidence 3467899999999999999999951 1111 0 00 011222334556789999999999998
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (571)
+...+..+++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+...
T Consensus 79 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 79 VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp SCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 877777788899999999999876443322 22333322 47899999999998653
No 90
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.74 E-value=9.9e-18 Score=157.66 Aligned_cols=119 Identities=21% Similarity=0.243 Sum_probs=78.4
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
..+..+|+++|.+|+|||||+++|+........ ....|.+.......+......++||||||+.
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT----------------EATIGVDFRERAVDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC----------------CCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence 345789999999999999999999732211000 0011222222222222234689999999999
Q ss_pred CcH-HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 167 DFT-LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~-~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
+|. .....+++.+|++|+|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141 (189)
T ss_dssp HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 887 6677889999999999999864332222222 2222 35799999999999854
No 91
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.74 E-value=7.8e-18 Score=168.14 Aligned_cols=111 Identities=20% Similarity=0.276 Sum_probs=81.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+|+|. |.....+. ..|+|+......+.+ +..+.+|||||+.+|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~---g~~~~v~~---------------~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~ 63 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLIT---GHNQRVGN---------------WPGVTVERKSGLVKK-NKDLEIQDLPGIYSMS 63 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH---CCCCCCCS---------------SSCCCCSCEEEECTT-CTTEEEEECCCCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHH---CCCCcccC---------------CCCCcEEEEEEEEec-CCeEEEEECCCcCccC
Confidence 4689999999999999999996 32211111 136666665566655 7789999999998875
Q ss_pred ------HHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 170 ------LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ------~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.....++. .+|++++|+|+++. ......+.++...++|+++|+||+|+..
T Consensus 64 ~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 64 PYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp CSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred CCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 23344555 59999999999762 3334445666778999999999999753
No 92
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.74 E-value=3.5e-17 Score=149.64 Aligned_cols=115 Identities=18% Similarity=0.192 Sum_probs=74.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|+....... ...+ .+.+. .....+......+.+|||||+.++.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~~t-----------~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~ 66 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVED-----YEPT-----------KADSY-RKKVVLDGEEVQIDILDTAGQEDYA 66 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSC-----CCTT-----------CCEEE-EEEEEETTEEEEEEEEECCC---CH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCC-----CCCC-----------cceEE-EEEEEECCEEEEEEEEECCCcchhH
Confidence 57899999999999999999983221000 0000 01111 1111222233689999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
.....+++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 67 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 9999999999999999999864332222222 2222 23799999999999864
No 93
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.74 E-value=1e-17 Score=153.64 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=78.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+++|+.... .... . ...|.+.......+......+.+|||||+.+|
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~----~----------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF--TKDY----K----------KTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC--CCCS----S----------CCCSSSEEEEEEEETTEEEEEEEECCTTGGGT
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC--CCCC----C----------CceEEEEEEEEEEECCEEEEEEEEcCCCcHhH
Confidence 467899999999999999999973211 0000 0 00112222222222223468999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
.......++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 68 DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD 123 (168)
T ss_dssp TCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc
Confidence 88888899999999999999874332222222 22322 4899999999999864
No 94
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.74 E-value=1.9e-17 Score=153.50 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=78.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~ 167 (571)
..+|+++|+.|+|||||+++|+........ ...++.......+.+++ ..+.+|||||+.+
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 75 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTY------------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 75 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSC------------------CCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC------------------CCceeeEEEEEEEEECCeEEEEEEEECCCcHH
Confidence 478999999999999999999832211000 01122222223333333 6899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHH---hcCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~---~~~~p~ivviNK~D~~~ 221 (571)
|...+...++.+|++++|+|+.+........ .+..+. ..++|+++|+||+|+..
T Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 76 FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 9888889999999999999998643322222 222222 24789999999999864
No 95
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.74 E-value=2.6e-17 Score=152.54 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=79.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
....+|+++|++|+|||||+++|+...... +....++.......+.+++ ..+.+|||||+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDT------------------QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----------------------CCSEEEEEEEEEETTEEEEEEEEECCCC
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCC------------------CCCCceeeeEEEEEEEECCEEEEEEEEeCCCc
Confidence 346799999999999999999997322110 0011122222223333444 58999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---h----cCCCeEEEEecCCcc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---K----YGVPRICFVNKMDRL 220 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~----~~~p~ivviNK~D~~ 220 (571)
.+|.......++.+|++++|+|+.+.........| ..+. . .++|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 99998888899999999999999875433322222 2222 1 578999999999986
No 96
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.74 E-value=1.3e-17 Score=156.07 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=81.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
++..+|+++|++|+|||||+++|+........ ...++.......+..++ ..+.||||||+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 69 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS------------------NHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC------------------CCCSEEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC------------------CCccceEEEEEEEEECCEEEEEEEEeCCCc
Confidence 45789999999999999999999733211100 01122222223333444 68999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-H---HHHhcCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-R---QADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~---~~~~~~~p~ivviNK~D~~~ 221 (571)
.+|...+..+++.+|++|+|+|+.+.........| . .....++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 70 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 99999889999999999999999875443333323 2 22235789999999999854
No 97
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.74 E-value=1.3e-17 Score=160.55 Aligned_cols=120 Identities=17% Similarity=0.088 Sum_probs=80.3
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec----------Ce
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------KH 155 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~----------~~ 155 (571)
..++..+|+++|++|+|||||+++|+.... .. ... ...+.+.......+... ..
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~--~~~------------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKF--NP--KFI------------TTVGIDFREKRVVYNAQGPNGSSGKAFKV 84 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCC--CC--EEE------------EEEEEEEEEEEEEEEC-------CCEEEE
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCC--Cc--CCC------------CceeEEEEEEEEEECCccccccccCceeE
Confidence 345678999999999999999999972211 00 000 00111111112222222 57
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHH-HHh----cCCCeEEEEecCCccc
Q 008294 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ-ADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 156 ~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~-~~~----~~~p~ivviNK~D~~~ 221 (571)
.++||||||+.+|...+...++.+|++|+|+|+.+.........|.. +.. .++|+++|+||+|+..
T Consensus 85 ~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp EEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred EEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 89999999999999889999999999999999987544333333322 221 4789999999999854
No 98
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.6e-17 Score=154.37 Aligned_cols=119 Identities=16% Similarity=0.104 Sum_probs=73.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|+...... .... ...+.+.......+......+++|||||+.+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~~------------~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 72 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLA---GTFI------------STVGIDFRNKVLDVDGVKVKLQMWDTAGQER 72 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC---CCCC------------CCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC---CCcC------------CceeeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 456899999999999999999997432210 0000 0012222222222222235899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHh---cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
|...+..+++.+|++|+|+|+.+......... +..+.. .++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 73 FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp ------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 98888889999999999999987543332222 233332 5789999999999864
No 99
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.74 E-value=4.6e-18 Score=181.61 Aligned_cols=114 Identities=25% Similarity=0.316 Sum_probs=83.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC----
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV---- 166 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~---- 166 (571)
++|+++|++|+|||||+|+|+ |... ...+...|+|.+.....+.|.+..++||||||+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~---~~~~--------------~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 66 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIA---GERI--------------SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE 66 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHE---EEEC--------------C-----------CEEEECTTCSSCCEEEC---------
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCc--------------eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcch
Confidence 689999999999999999995 2100 0122346788888888888889999999999986
Q ss_pred ----CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 167 ----DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ----~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.+...+..+++.+|++|+|+|+.++....+.++...++..++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 67 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCcc
Confidence 4566778899999999999999999999888888888889999999999999754
No 100
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.74 E-value=8.6e-18 Score=154.55 Aligned_cols=118 Identities=18% Similarity=0.104 Sum_probs=73.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|+......... ...|.+.......+......+.+|||||+.+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 67 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHI----------------TTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCC----------------CCCSCEEEEEEEESSSCEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCC----------------CccceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 345799999999999999999998332110000 0012222222222222346789999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (571)
+.......++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125 (170)
T ss_dssp -----CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred hhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 888888888999999999999875433333322 2222 25789999999999864
No 101
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.74 E-value=3.8e-17 Score=154.85 Aligned_cols=119 Identities=18% Similarity=0.128 Sum_probs=80.1
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe---ecCeEEEEEc
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY---WNKHRINIID 161 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~---~~~~~i~liD 161 (571)
.+.++..+|+++|..|+|||||++++.. ..... ...+++......... .....++|||
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~---~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~i~D 75 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFH---KMSPN----------------ETLFLESTNKIYKDDISNSSFVNFQIWD 75 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHS---CCCGG----------------GGGGCCCCCSCEEEEECCTTSCCEEEEE
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHh---cCCCc----------------ceeeeccccceeeeeccCCCeeEEEEEE
Confidence 3445678999999999999999998752 11100 111222222223322 3457899999
Q ss_pred CCCCCCcHHHH---HHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh-----cCCCeEEEEecCCcccc
Q 008294 162 TPGHVDFTLEV---ERALRVLDGAICLFDSVAGVEPQSETVWRQADK-----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 162 TPG~~~f~~~~---~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~-----~~~p~ivviNK~D~~~~ 222 (571)
|||+.+|.... ..+++.+|++|+|+|+++........+...+.. .++|+++|+||+|+...
T Consensus 76 t~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 76 FPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp CCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred CCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 99999987776 789999999999999998743333333333332 38999999999998754
No 102
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.74 E-value=8.4e-18 Score=154.46 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=77.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 166 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~~ 166 (571)
...+|+++|++|+|||||+++|+....... ...+++.......+.++ ...+.+|||||+.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPS------------------FITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------------------------CCEEEEEEESSSCEEEEEEECCTTGG
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCC------------------CCCccceeEEEEEEEECCEEEEEEEEeCCCCh
Confidence 357899999999999999999973211000 01112222222233333 4679999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHh---cCCCeEEEEecCCcc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADK---YGVPRICFVNKMDRL 220 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~---~~~p~ivviNK~D~~ 220 (571)
++...+...++.+|++++|+|+.+......... +..+.. .++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp GTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 988888889999999999999987543322222 233333 378999999999983
No 103
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.74 E-value=7.5e-17 Score=153.32 Aligned_cols=117 Identities=18% Similarity=0.203 Sum_probs=79.6
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTP 163 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTP 163 (571)
+..+..+|+++|++|+|||||+++|+........ ..+ .+.+. ...+.++ ...+.|||||
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----~~t-----------~~~~~---~~~~~~~~~~~~~~l~Dt~ 70 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY-----EPT-----------KADSY---RKKVVLDGEEVQIDILDTA 70 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTC-----CTT-----------CCEEE---EEEEEETTEEEEEEEEECC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCC-----CCc-----------cceEE---EEEEEECCEEEEEEEEcCC
Confidence 3445789999999999999999999833211000 000 11111 1222333 3589999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCccc
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~ 221 (571)
|+.+|......+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 71 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 71 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp CTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred ChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence 9999999999999999999999999864332222222 22222 3799999999999864
No 104
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.74 E-value=1.3e-17 Score=157.16 Aligned_cols=118 Identities=15% Similarity=0.083 Sum_probs=80.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|+.|+|||||+++|+........ ....|.+.......+......++||||||+.+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC---------------------CCSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 45689999999999999999999842211000 00112233332233322346899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh---cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
|......+++.+|++|+|+|+++....+... .+..+.. .++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 83 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 8888888999999999999998744333322 2233333 3789999999999854
No 105
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.73 E-value=8.5e-18 Score=156.92 Aligned_cols=116 Identities=17% Similarity=0.093 Sum_probs=60.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
+...+|+++|++|+|||||+++|+..... .+...+++.......+.+++ ..++||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN------------------STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67 (183)
T ss_dssp SEEEEEEEECCCCC----------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC------------------CCCCCcccceeEEEEEEECCEEEEEEEEcCCCC
Confidence 45689999999999999999999721110 01112223333333344444 78999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh---cCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.+|.......++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp ------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 998887788889999999999998754333322 2233333 3789999999999864
No 106
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.73 E-value=5.5e-17 Score=152.09 Aligned_cols=113 Identities=21% Similarity=0.278 Sum_probs=81.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+++|+ +...... ...++|.......+.+++..+++|||||+.+|
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~---~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALT---GENVYIG---------------NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH---TTCEEEE---------------ECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHh---CCCcccc---------------CCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 45799999999999999999997 2111111 11355666666667778899999999999987
Q ss_pred H------HHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 169 T------LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~------~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
. .....+++ .+|++++|+|+.. .......+..+...++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 68 TANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp SSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred ccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 4 22334444 4899999999975 23334455666678899999999999754
No 107
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=152.75 Aligned_cols=116 Identities=15% Similarity=0.063 Sum_probs=71.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC-
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~- 167 (571)
...+|+++|++|+|||||+++|+.... ... ....|.+.......+......+.+|||||+..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 65 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQE---RDL--------------HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC----------------------CCCSSSSEEEEEEEETTEEEEEEEECCC-----
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCC---ccc--------------cCccccceeEEEEEECCEEEEEEEEecCCCCcc
Confidence 457999999999999999999972111 000 01123344333333332345789999999988
Q ss_pred -cHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHhc----CCCeEEEEecCCccc
Q 008294 168 -FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADKY----GVPRICFVNKMDRLG 221 (571)
Q Consensus 168 -f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~~----~~p~ivviNK~D~~~ 221 (571)
+.......++.+|++++|+|+.+........ .+..+... ++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp --CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred chhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 4444556678899999999998643333322 23334443 799999999999864
No 108
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.5e-17 Score=156.64 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=81.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+++|+........ ....|.+.......+......+.||||||+.+|
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 77 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPEL----------------AATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 77 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC----------------CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccC----------------CCccceEEEEEEEEECCeEEEEEEEeCCCchhh
Confidence 3579999999999999999999743211000 011233444444444445578999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCcc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRL 220 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~ 220 (571)
......+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 78 RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp CCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 88888999999999999999875433333333 33333 368999999999984
No 109
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.73 E-value=4.5e-18 Score=158.53 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=75.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|++|+|||||+++|+........ .. ..+.+. .....+......+++|||||+.+
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~-----~~-----------t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSY-----DP-----------TIENTF-TKLITVNGQEYHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCC-----CT-----------TCCEEE-EEEEEETTEEEEEEEEECCCCCT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCC-----CC-----------CccccE-EEEEEECCEEEEEEEEeCCCchh
Confidence 34689999999999999999999832211000 00 112222 12222222336789999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-----HHHHhcCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-----RQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-----~~~~~~~~p~ivviNK~D~~~ 221 (571)
|.......++.+|++++|+|+.+.........| ..+...++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp TCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT
T ss_pred hhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 877777788899999999999864332222222 222234799999999999854
No 110
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.73 E-value=3.3e-18 Score=165.30 Aligned_cols=121 Identities=21% Similarity=0.178 Sum_probs=87.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
......+|+++|.+|+|||||+++|+..... .. .....|++.......+......++||||||+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~--~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 74 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFE--KK--------------YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHT--CE--------------EETTTTEEEEEEEEEETTEEEEEEEEEECSG
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCC--CC--------------CCCccceeEEEEEEEECCEEEEEEEEeCCCh
Confidence 3445689999999999999999997622111 00 0112355666665555556788999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh--cCCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
.+|......+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp GGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred HHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc
Confidence 99888888899999999999999875444433333 22322 28999999999998653
No 111
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.73 E-value=2.2e-17 Score=153.49 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=69.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec---CeEEEEEcCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPG 164 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~i~liDTPG 164 (571)
++..+|+++|++|+|||||+++|+........ ...++.......+.++ ...+.+|||||
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 67 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQY------------------KATIGADFLTKEVTVDGDKVATMQVWDTAG 67 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---------------------CCCSCEEEEECCSSSCCEEEEEECCC-
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCccc------------------CCccceEEEEEEEEEcCCcEEEEEEEECCC
Confidence 45789999999999999999999842211000 0111111222223332 46899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh-------cCCCeEEEEecCCccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK-------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~-------~~~p~ivviNK~D~~~ 221 (571)
+.+|.......++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp ---------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred ChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 999988888889999999999999875433332222 22221 5789999999999854
No 112
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.73 E-value=3e-17 Score=153.26 Aligned_cols=117 Identities=15% Similarity=0.032 Sum_probs=78.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+++|+......... .+ . +... .....+......+.+|||||+.+|
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~-----~t-~----------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~ 66 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-----PT-V----------FDNY-SANVMVDGKPVNLGLWDTAGQEDY 66 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCC-----CC-S----------CCEE-EEEEEETTEEEEEEEECCCCSGGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcC-----Cc-c----------ccee-EEEEEECCEEEEEEEEECCCCHhH
Confidence 35689999999999999999997432110000 00 0 1111 111122223467889999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHH--HHHHHHhc--CCCeEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
......+++.+|++++|+|+.+........ .+..+... ++|+++|+||+|+...
T Consensus 67 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 67 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124 (186)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred HHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccccc
Confidence 877777889999999999998754444332 23344443 8999999999998653
No 113
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.73 E-value=7.1e-17 Score=147.14 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|+.|+|||||+++|+........ ..+ .+... .....+......+.+|||||+.++..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----~~~-----------~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~ 66 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEC-----DPT-----------IEDSY-RKQVVIDGETCLLDILDTAGQEEYSA 66 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCC-----CTT-----------CCEEE-EEEEEETTEEEEEEEEECCCCSSCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcccc-----CCc-----------cceEE-EEEEEECCEEEEEEEEECCCchhhhH
Confidence 58999999999999999999833211000 000 01111 11112222346689999999999998
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh----cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++++|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 8999999999999999998643322222 2233322 2799999999999864
No 114
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.73 E-value=9.8e-17 Score=149.67 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=77.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 166 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~~ 166 (571)
+..+|+++|+.|+|||||+++|+....... ...+ .+.+. ...+... ...+.||||||+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----~~~t-----------~~~~~---~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVED-----YEPT-----------KADSY---RKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCS-----CCTT-----------CCEEE---EEEEEETTEEEEEEEEECCCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCc-----CCCc-----------cceEE---EEEEEECCEEEEEEEEECCCCc
Confidence 467999999999999999999983221000 0000 01111 1122233 3579999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
+|......+++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 78 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred ccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999999999999999864332222222 2222 23799999999999864
No 115
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.73 E-value=2.7e-17 Score=151.18 Aligned_cols=116 Identities=14% Similarity=0.028 Sum_probs=68.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|+...+.... . ...+.........+......+.+|||||+.++.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 65 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH--E--------------MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG 65 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEETTEEEEEEEECCCCC----
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc--c--------------CCCcCCeeeEEEEECCeEEEEEEEECCCccccc
Confidence 568999999999999999999621111000 0 000111112222222234678899999999986
Q ss_pred H-HHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCccc
Q 008294 170 L-EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~-~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
. .....++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 66 GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp ----CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred hhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 6 455568889999999999874322222 22233322 2799999999999864
No 116
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=2.1e-17 Score=157.58 Aligned_cols=117 Identities=20% Similarity=0.154 Sum_probs=80.6
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG 164 (571)
.++..+|+++|.+|+|||||+++|+....... ....++.+.....+.+++ ..++||||||
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G 84 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPG------------------QGATIGVDFMIKTVEINGEKVKLQIWDTAG 84 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTT------------------CCCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCC------------------CCCccceeEEEEEEEECCEEEEEEEEECCC
Confidence 35578999999999999999999973221100 001112222222333443 5899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCCeEEEEecCCccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (571)
+.+|......+++.+|++|+|+|+++.........| ..+. ..++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 85 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp SGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 999998888899999999999999875433222222 2232 24789999999999854
No 117
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.73 E-value=6.1e-17 Score=153.15 Aligned_cols=64 Identities=25% Similarity=0.293 Sum_probs=52.0
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH-hcCCCeEEEEecCC
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD-KYGVPRICFVNKMD 218 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~-~~~~p~ivviNK~D 218 (571)
..+.||||||+.+|...+...++.+|++|+|+|+.++........| ..+. ..++|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 7899999999999988899999999999999999886544443333 3333 35689999999999
No 118
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.72 E-value=3.7e-17 Score=149.80 Aligned_cols=114 Identities=12% Similarity=0.043 Sum_probs=63.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|. +...... ....|.+.. ....+......+.+|||||+.+|.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~---~~~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~ 63 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG---GVEDGPE--------------AEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGR 63 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC---CC------------------------CEEE-EEEEETTEEEEEEEEECC------
T ss_pred eEEEEEECCCCCCHHHHHHHHc---CccccCC--------------CCccccceE-EEEEECCEEEEEEEEECCCCccch
Confidence 4589999999999999999995 2111100 111233332 122333345678999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|+.+....... ..+..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 64 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp ---------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred hhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 8888899999999999999864332222 22333333 3789999999999864
No 119
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=169.33 Aligned_cols=112 Identities=20% Similarity=0.127 Sum_probs=77.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+|+|++|+|||||+++|+. +... . . ..|+......+.+.+..++||||||+.+|.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~--~~~~---~---------~-------~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 223 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKL--GEIV---T---------T-------IPTIGFNVETVEYKNISFTVWDVGGQDKIR 223 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCS--SCCE---E---------E-------EEETTEEEEEEEETTEEEEEEECC-----C
T ss_pred cceEEEECCCCccHHHHHHHHhC--CCCC---C---------c-------ccccceEEEEEecCcEEEEEEECCCCHhHH
Confidence 45899999999999999999951 1110 0 0 013334445567788999999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHH--HHHHHHHh---cCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~---~~~p~ivviNK~D~~~~ 222 (571)
.....+++.+|++|+|+|+++....... .....+.. .++|+++|+||+|+...
T Consensus 224 ~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp CSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 8899999999999999999865443322 22233333 28899999999998654
No 120
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.72 E-value=4.5e-17 Score=157.12 Aligned_cols=116 Identities=20% Similarity=0.199 Sum_probs=78.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||||+++++...... ++. ...|................+.||||+|+++|.
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~-------------~~~---~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~ 76 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDN-------------TYQ---ATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR 76 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC--------------------------CEEEEEECSSCEEEEEEECCSCTTTCG
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCC-------------CcC---CccceEEEEEEEEecceEEEEEEEECCCchhhh
Confidence 4689999999999999999998322110 000 011222222222233345678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH---HhcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA---DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~---~~~~~p~ivviNK~D~~~ 221 (571)
.....+++.+|++++|+|.++.........| ..+ ...++|+++|.||+|+..
T Consensus 77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~ 132 (216)
T 4dkx_A 77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132 (216)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh
Confidence 9999999999999999999864443333222 222 234789999999999864
No 121
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=2.6e-17 Score=157.56 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=79.1
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG 164 (571)
.....+|+++|++|+|||||+++|+...... . ...+++.......+.+++ ..+.||||||
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 78 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNP----S--------------FITTIGIDFKIKTVDINGKKVKLQLWDTAG 78 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCC----S--------------SSCCCSCCEEEEEEEETTEEEEEEEECCTT
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCc----c--------------cCCcccceEEEEEEEECCEEEEEEEEeCCC
Confidence 3456899999999999999999997322100 0 001222222333344454 6899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh---cCCCeEEEEecCCcc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRL 220 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~ 220 (571)
+.+|...+..+++.+|++|+|+|+.+....... ..+..+.. .++|+++|+||+|+.
T Consensus 79 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp GGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred cHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 999888888899999999999999875432222 22233333 378999999999983
No 122
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.72 E-value=2e-17 Score=157.73 Aligned_cols=116 Identities=19% Similarity=0.172 Sum_probs=80.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~ 165 (571)
+...+|+++|++|+|||||+++|+........ ...++.......+.++ ...+.||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDY------------------ISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTC------------------CCSSCCCEEEEEEEETTEEEEEEEECCTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCC------------------CCcccceeEEEEEEECCEEEEEEEEeCCCh
Confidence 45689999999999999999999732211000 0111222222233333 358999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.+|...+..+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 99888888889999999999999875444433333 33332 4689999999999864
No 123
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=7.8e-17 Score=152.36 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=77.6
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
...+|+++|++|+|||||+++|+.......... ..+.+.. ....+......+.||||||+.+|
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----------------t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~ 69 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP----------------TIEDTYR-QVISCDKSVCTLQITDTTGSHQF 69 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSC----------------CCCEEEE-EEEEETTEEEEEEEEECCGGGSC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccC----------------cccccee-EEEEECCEEEEEEEEeCCChHHh
Confidence 457999999999999999999984211100000 0011111 11122223467999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh-----cCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~-----~~~p~ivviNK~D~~~ 221 (571)
......+++.+|++++|+|+.+....... ..+..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 70 PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred HHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 99899999999999999999864322221 22222222 3789999999999864
No 124
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=2.2e-17 Score=155.80 Aligned_cols=116 Identities=15% Similarity=0.015 Sum_probs=80.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~ 165 (571)
+...+|+++|+.|+|||||+++|+........ ..+ .+... ...+..+ ...+.||||||+
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~-----~~t-----------~~~~~---~~~~~~~~~~~~~~i~D~~G~ 76 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEY-----VPT-----------VFDHY---AVSVTVGGKQYLLGLYDTAGQ 76 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSC-----CCS-----------SCCCE---EEEEESSSCEEEEEEECCCCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-----CCc-----------cccee---EEEEEECCEEEEEEEEECCCC
Confidence 34679999999999999999999843211000 000 01111 1122333 378999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH--HHHHHHhc--CCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
.+|......+++.+|++|+|+|+.+........ .+..+... ++|+++|+||+|+...
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp SSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred cchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 999888888899999999999998754333332 33444444 8999999999998654
No 125
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=158.23 Aligned_cols=120 Identities=18% Similarity=0.141 Sum_probs=78.4
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
.+..+..+|+++|.+|+|||||+++|+......... . ..+.+. .....+......+.||||||
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-----~-----------t~~~~~-~~~~~~~~~~~~~~l~Dt~G 81 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD-----P-----------TVENTY-SKIVTLGKDEFHLHLVDTAG 81 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC-----C-----------CSEEEE-EEEEC----CEEEEEEEECC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC-----C-----------ccceEE-EEEEEECCEEEEEEEEECCC
Confidence 344567899999999999999999998322110000 0 011122 22233334568899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~ 221 (571)
+.+|......+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 82 QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp CCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred ccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 999888888889999999999999864433333322 23322 3789999999999864
No 126
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.72 E-value=5.6e-17 Score=155.63 Aligned_cols=126 Identities=21% Similarity=0.207 Sum_probs=83.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec---CeEEEEEcCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGH 165 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~i~liDTPG~ 165 (571)
+..+|+++|++|+|||||+++|+..... .. ..+.......+.++ +..++||||||+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 64 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DT-------------------QTSITDSSAIYKVNNNRGNSLTLIDLPGH 64 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CB-------------------CCCCSCEEEEEECSSTTCCEEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cc-------------------cCCcceeeEEEEecCCCccEEEEEECCCC
Confidence 3578999999999999999999843211 00 00111111223444 678999999999
Q ss_pred CCcHH-HHHHHHHhcCeEEEEEeCCCCCchhHHH---HHHHH-H-----hcCCCeEEEEecCCcccc-chhhhHHHHHHH
Q 008294 166 VDFTL-EVERALRVLDGAICLFDSVAGVEPQSET---VWRQA-D-----KYGVPRICFVNKMDRLGA-NFFRTRDMIVTN 234 (571)
Q Consensus 166 ~~f~~-~~~~~l~~~D~~ilVvda~~g~~~~~~~---~~~~~-~-----~~~~p~ivviNK~D~~~~-~~~~~~~~i~~~ 234 (571)
.+|.. .+..+++.+|++|+|+|+.+ ....... .|... . ..++|+++|+||+|+... ......+.+++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~ 143 (214)
T 2fh5_B 65 ESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKE 143 (214)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHH
Confidence 99887 56677899999999999976 2222222 22222 1 236899999999999764 345556666655
Q ss_pred hC
Q 008294 235 LG 236 (571)
Q Consensus 235 l~ 236 (571)
++
T Consensus 144 l~ 145 (214)
T 2fh5_B 144 LN 145 (214)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 127
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.72 E-value=1.7e-17 Score=158.13 Aligned_cols=117 Identities=19% Similarity=0.121 Sum_probs=78.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|++|+|||||+++|+......... ...|.+.......+......+.||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK----------------ATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCC----------------CCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCC----------------CcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 356899999999999999999998432111000 0012222222222222346899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh-------cCCCeEEEEecCCcc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK-------YGVPRICFVNKMDRL 220 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~-------~~~p~ivviNK~D~~ 220 (571)
|......+++.+|++|+|+|+.++........| ..+.. .++|+++|+||+|+.
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp GSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred HHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 877777888999999999999875433333222 22211 478999999999986
No 128
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.72 E-value=1.1e-17 Score=155.72 Aligned_cols=117 Identities=17% Similarity=0.112 Sum_probs=73.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+++|+......... .+. +.... ....+......+.+|||||+.+|
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~-----~t~-----------~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~ 69 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYV-----PTV-----------FDNFS-ANVVVNGATVNLGLWDTAGQEDY 69 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------------------CB-CCCC-------CEEECCCC-CTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC-----Cee-----------eeeEE-EEEEECCEEEEEEEEECCCChhh
Confidence 35789999999999999999998432110000 000 00000 00112223466789999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HH-HHHHh--cCCCeEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSET-VW-RQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~-~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
......+++.+|++++|+|+++........ .| ..+.. .++|+++|+||+|+...
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 70 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp TTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred hhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcC
Confidence 888888899999999999998754433332 23 33333 27999999999998653
No 129
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.72 E-value=3.1e-16 Score=152.37 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=78.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+.++|+++|.+|+|||||+++|+.. ...... ..+.|.......+.+.+..+.||||||+.+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~---~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA---NVDVQS---------------YSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT---CEEEEC---------------C-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC---CCccCC---------------CCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 45689999999999999999999621 111100 123344444455566788999999999943
Q ss_pred c---------HHHHHHHHHhcCeEEEEEeCCCCCchh---HHHHHHHHHhc--CCCeEEEEecCCccc
Q 008294 168 F---------TLEVERALRVLDGAICLFDSVAGVEPQ---SETVWRQADKY--GVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f---------~~~~~~~l~~~D~~ilVvda~~g~~~~---~~~~~~~~~~~--~~p~ivviNK~D~~~ 221 (571)
+ ...+...+..+|++|+|+|+++..... ....+..+... ++|+++|+||+|+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 89 RAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp SCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred cccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 1 112233467789999999998765432 23445555554 899999999999864
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.71 E-value=1.6e-16 Score=169.82 Aligned_cols=118 Identities=17% Similarity=0.254 Sum_probs=86.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|++|+|||||+|+|+ |....... ...|+|.+.....+.+++..+.+|||||+..
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~---g~~~~~v~--------------~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~ 240 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAIL---NKERALVS--------------PIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 240 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHH---TSTTEEEC--------------CCC------CCEEEEETTEEEEESSCSCC--
T ss_pred ccCceEEEECCCCCCHHHHHHHHh---CCcccccC--------------CCCCCcCCceEEEEEECCEEEEEEECCCCcc
Confidence 356899999999999999999997 32211111 1235676666677788899999999999854
Q ss_pred cHH------------HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 168 FTL------------EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~------------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
+.. ....+++.+|++++|+|+.++...+...++..+...++|+++|+||+|+...
T Consensus 241 ~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 241 KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVH 307 (439)
T ss_dssp ---------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTT
T ss_pred ccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCc
Confidence 322 2356788999999999999998888887788888889999999999998653
No 131
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.71 E-value=3.3e-17 Score=156.44 Aligned_cols=116 Identities=13% Similarity=0.030 Sum_probs=79.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe--ecCeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY--WNKHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~--~~~~~i~liDTPG~ 165 (571)
.+..+|+++|.+|+|||||+++|+......... +++.......+. .....++||||||+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-------------------PTVFDNYSANVMVDGKPVNLGLWDTAGL 88 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CC-------------------CCSEEEEEEEEECC-CEEEEEEEEECCS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcC-------------------CeecceeEEEEEECCEEEEEEEEECCCc
Confidence 345799999999999999999998432211110 111111111222 23456779999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH--HHHHHHhc--CCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
.+|......+++.+|++++|+|+++........ .+..+... ++|+++|+||+|+...
T Consensus 89 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTC
T ss_pred hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccc
Confidence 999888888899999999999998765544432 33344444 8999999999998754
No 132
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.71 E-value=3.4e-17 Score=155.75 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=77.9
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG 164 (571)
.++..+|+++|..|+|||||+++|+..... . +....++.......+..++ ..+.||||||
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~--~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G 83 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFK--Q----------------DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAG 83 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------------------------CCEEEEEEEETTEEEEEEEECCTT
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC--c----------------cCCCcccceeEEEEEEECCeeeEEEEEcCCC
Confidence 355789999999999999999999722110 0 0001112222222333343 7899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCCeEEEEecCCccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (571)
+.+|...+..+++.+|++|+|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 84 QERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp HHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred cHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 988877778889999999999999875433332222 2232 24789999999999854
No 133
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.71 E-value=1.3e-16 Score=149.90 Aligned_cols=113 Identities=16% Similarity=0.196 Sum_probs=67.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~~~ 167 (571)
..+|+++|..|+|||||+++|+....... ..++ .+... ...+.++ ...+.||||||+.+
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----~~~t-----------~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~ 81 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDE-----YDPT-----------IEDSY---RKQVVIDGETCLLDILDTAGQEE 81 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSC-----CCTT-----------CCEEE---EEEEEETTEEEEEEEEECCC---
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCccc-----cCCc-----------cceEE---EEEEEECCEEEEEEEEECCChHH
Confidence 46899999999999999999983221100 0000 01111 1122233 35699999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~ 221 (571)
|......+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 82 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp --------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 988888999999999999999875443333322 22222 3799999999999864
No 134
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.70 E-value=2.6e-17 Score=176.73 Aligned_cols=114 Identities=25% Similarity=0.335 Sum_probs=88.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC-----
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG----- 164 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG----- 164 (571)
.++|+++|++|+|||||+|+|+ |.. . .......|+|.......+.|.+..+++|||||
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~---~~~--~------------~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~ 85 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIA---GER--I------------SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 85 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHE---EEE--E------------C-----------CEEEECTTCSSCCEEECCCC-----
T ss_pred CCEEEEECCCCCcHHHHHHHHh---CCC--C------------cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcc
Confidence 5799999999999999999995 210 0 01223458888888888888999999999999
Q ss_pred ---CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 165 ---HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 165 ---~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
+..+...+..+++.+|++|+|+|+.+++...+.++++.++..++|+++|+||+|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 86 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp -CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred hHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 45566778889999999999999999999999999999999999999999999975
No 135
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.4e-17 Score=157.73 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=78.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
+...+|+++|++|+|||||+++|+........ ....|.+... ..+.+++ ..+.||||||+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~----------------~~t~~~~~~~--~~~~~~~~~~~~~i~Dt~G~ 72 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS----------------KSTIGVEFAT--RTLEIEGKRIKAQIWDTAGQ 72 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC----------------------CCSEEE--EEEEETTEEEEEEEECCTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEE--EEEEECCEEEEEEEEECCCc
Confidence 45789999999999999999999732211000 0011222222 2333444 68999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.+|...+..+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp TTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred cchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 99988788889999999999999875544433333 33333 3789999999999864
No 136
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=3.1e-16 Score=148.39 Aligned_cols=116 Identities=20% Similarity=0.108 Sum_probs=76.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|.+|+|||||+++|+........ ..+ .+... .....+......+.||||||+.+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-----~~t-----------~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-----DPT-----------LESTY-RHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-----CTT-----------CCEEE-EEEEEETTEEEEEEEEECCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCccc-----CCC-----------CCceE-EEEEEECCEEEEEEEEECCCCCc
Confidence 34579999999999999999999843211000 000 11111 11122222347799999999998
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHH----HhcCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQA----DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~----~~~~~p~ivviNK~D~~~ 221 (571)
.......++.+|++++|+|+++....... ..+..+ ...++|+++|+||+|+..
T Consensus 89 -~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp -CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred -ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc
Confidence 67788889999999999999863222111 112222 235899999999999864
No 137
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.70 E-value=5.5e-17 Score=155.45 Aligned_cols=118 Identities=14% Similarity=0.033 Sum_probs=78.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|++|+|||||+++|+........ ..+ .+.... ....+......+.||||||+.+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~-----~~t-----------~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-----IPT-----------VFDNFS-ANVAVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-----CCS-----------SCCCEE-EEEECSSCEEEEEEECCCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccC-----CCc-----------cceeEE-EEEEECCEEEEEEEEECCCcHH
Confidence 45689999999999999999999832211000 000 011111 1112222346899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH--HHHHHHHhc--CCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
|......+++.+|++|+|+|+++....... ..+..+... ++|+++|+||+|+...
T Consensus 70 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD 128 (212)
T ss_dssp CCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred HHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhC
Confidence 988888889999999999999875443332 223344443 8999999999998653
No 138
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.70 E-value=1.1e-16 Score=174.01 Aligned_cols=114 Identities=17% Similarity=0.075 Sum_probs=84.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|.+|+|||||+++|+..... . . ..|+......+.+++..+.||||||+.+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~------------~-------~~T~~~~~~~~~~~~~~~~l~Dt~G~~~ 378 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV--T------------T-------IPTVGFNVETVTYKNVKFNVWDVGGQDK 378 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC--C------------C-------CCCSSEEEEEEESSSCEEEEEEECCCGG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC--C------------c-------CCccceeEEEEEeCCEEEEEEECCCcHH
Confidence 45689999999999999999999732210 0 0 0133344455667889999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh----cCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~~~ 222 (571)
|...+..+++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+...
T Consensus 379 ~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp GSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred HHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 9888888999999999999998864443332 2223322 48999999999998653
No 139
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.70 E-value=8.3e-17 Score=151.94 Aligned_cols=117 Identities=14% Similarity=0.031 Sum_probs=79.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|.+|+|||||+++|+......... .+ .+.+... ...+......++||||||+.+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~-----~t-----------~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~ 83 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYV-----PT-----------VFENFSH-VMKYKNEEFILHLWDTAGQEE 83 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCC-----CC-----------SEEEEEE-EEEETTEEEEEEEEEECCSGG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccC-----Ce-----------eeeeeEE-EEEECCEEEEEEEEECCCcHH
Confidence 456799999999999999999998432110000 00 1111111 122222345679999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHhc--CCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADKY--GVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~~--~~p~ivviNK~D~~~ 221 (571)
|......+++.+|++|+|+|+.+....... ..| ..+... ++|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 988888899999999999999875443332 223 333333 689999999999864
No 140
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.69 E-value=1.1e-16 Score=157.71 Aligned_cols=118 Identities=18% Similarity=0.191 Sum_probs=87.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC---
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH--- 165 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~--- 165 (571)
...+|+++|++|+|||||+|+|+......... ...|+|.......+.+++..++||||||+
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~----------------~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRL----------------GATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC-------------------------CCSCEEEEEEETTEEEEEEECCSCSST
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccC----------------CCCCccccEEEEEEEECCcEEEEEECCCCCCC
Confidence 45799999999999999999997322211100 01245666666677888999999999998
Q ss_pred -----CCcHHHHHHHH----HhcCeEEEEEeCCCCCchhHHHHHHHHHhc------CCCeEEEEecCCccccc
Q 008294 166 -----VDFTLEVERAL----RVLDGAICLFDSVAGVEPQSETVWRQADKY------GVPRICFVNKMDRLGAN 223 (571)
Q Consensus 166 -----~~f~~~~~~~l----~~~D~~ilVvda~~g~~~~~~~~~~~~~~~------~~p~ivviNK~D~~~~~ 223 (571)
.++..++.+++ +.+|++|+|+|+.. +...+...++.+... +.|+++|.||+|+...+
T Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~ 155 (247)
T 3lxw_A 84 QVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS 155 (247)
T ss_dssp THHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC
T ss_pred CCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCC
Confidence 55666777766 88999999999975 667777777766653 78999999999987654
No 141
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.69 E-value=2.2e-17 Score=158.88 Aligned_cols=118 Identities=22% Similarity=0.182 Sum_probs=77.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHV 166 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTPG~~ 166 (571)
....+|+++|.+|+|||||+++|+.. ....... ...+.+..........+. ..++||||||+.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDG--RFEKNYN--------------ATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTC--STTCEEE--------------TTTTEEEEEEEEEBTTSCEEEEEEEEECSGG
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcC--CCCCCCC--------------CccceeeEEEEEEeCCCcEEEEEEEecCCch
Confidence 34679999999999999999999621 1111000 011222221111111112 679999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH---HhcCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA---DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~---~~~~~p~ivviNK~D~~~ 221 (571)
++.......++.+|++|+|+|+.++...+....| ..+ ...++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp GTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred hhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 9887788889999999999999976554443333 222 234789999999999854
No 142
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.69 E-value=4.3e-16 Score=149.80 Aligned_cols=118 Identities=14% Similarity=-0.005 Sum_probs=64.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|.+|+|||||+++|+... ... . ...+ .+... .....+......+.||||||+.+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~--~~~--~-~~~t-----------~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~ 94 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGA--FPE--S-YTPT-----------VFERY-MVNLQVKGKPVHLHIWDTAGQDD 94 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC------------CCC-----------CCEEE-EEEEEETTEEEEEEEEEC-----
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCC--CCC--C-CCCc-----------cceeE-EEEEEECCEEEEEEEEECCCchh
Confidence 456799999999999999999997211 100 0 0000 01011 11112222345799999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HH-HHHHh--cCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSET-VW-RQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~-~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
|......+++.+|++|+|+|+++........ .| ..+.. .++|+++|+||+|+...
T Consensus 95 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp ----------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC
T ss_pred hhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc
Confidence 9888888999999999999998754333322 22 33333 37999999999998654
No 143
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.69 E-value=2.6e-16 Score=149.14 Aligned_cols=119 Identities=13% Similarity=0.021 Sum_probs=74.8
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.+...+|+++|.+|+|||||+++|....+.... ....+.+.......+......+.+|||||+.
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH----------------EPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGG----------------TTTSCTTEEEEEEEETTEEEEEEEECCCCCS
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccC----------------CCCcccceEEEEEEECCEEEEEEEEecCCCc
Confidence 345689999999999999999999511111000 0001111111122222234578899999999
Q ss_pred CcHH-HHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh----cCCCeEEEEecCCccc
Q 008294 167 DFTL-EVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~-~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
++.. ....+++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred cchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 8765 4566788999999999998643322222 2233332 3799999999999864
No 144
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.69 E-value=7.3e-17 Score=173.15 Aligned_cols=114 Identities=18% Similarity=0.098 Sum_probs=69.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+|+|+.... . ......|+|.+.....+.+++..++||||||+.++.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~---a--------------~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~ 295 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQER---A--------------IVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG 295 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-----------------------------------CEEEEETTEEEEEEC--------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---c--------------ccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch
Confidence 35799999999999999999962211 0 111234667777777788899999999999998865
Q ss_pred HHH--------HHHHHhcCeEEEEEeCCCCCch----hHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 170 LEV--------ERALRVLDGAICLFDSVAGVEP----QSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~--------~~~l~~~D~~ilVvda~~g~~~----~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
..+ ..+++.+|++++|+|++++... .....+..+. ++|+++|+||+|+...
T Consensus 296 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 296 EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAAN 358 (476)
T ss_dssp ------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTT
T ss_pred hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCc
Confidence 433 2356789999999999988776 3444444333 7999999999998654
No 145
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.68 E-value=7.3e-17 Score=153.14 Aligned_cols=116 Identities=14% Similarity=-0.007 Sum_probs=76.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
.+..+|+++|+.|+|||||+++|+.... .. . .. +++.......+..++ ..+.||||||+
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~--~~--~-~~--------------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~ 78 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY--PT--E-YI--------------PTAFDNFSAVVSVDGRPVRLQLCDTAGQ 78 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------------------------CCSSEEEEEEEEETTEEEEEEEEECCCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC--CC--C-CC--------------CcccceeEEEEEECCEEEEEEEEECCCC
Confidence 4567999999999999999999972210 00 0 00 011111112233344 57789999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH--HHHHHHhc--CCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
.+|......+++.+|++|+|+|+++........ .+..+... ++|+++|+||+|+...
T Consensus 79 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 79 DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRED 139 (201)
T ss_dssp TTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred HHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence 998777777889999999999998754433332 22333332 8999999999998653
No 146
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.68 E-value=5e-16 Score=145.75 Aligned_cols=109 Identities=15% Similarity=0.099 Sum_probs=74.1
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG 164 (571)
..+..+|+++|..|+|||||+++|+..... . .+.+ .+... ...+.+++ ..+.||||||
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~--~-----------~~~~----t~~~~---~~~~~~~~~~~~l~i~Dt~G 76 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYV--Q-----------EESP----EGGRF---KKEIVVDGQSYLLLIRDEGG 76 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCC--C-----------CCCT----TCEEE---EEEEEETTEEEEEEEEECSS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCC--C-----------CcCC----CcceE---EEEEEECCEEEEEEEEECCC
Confidence 345679999999999999999999832211 0 0000 01111 12233333 6678899999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCcc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRL 220 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~ 220 (571)
+.+|. +++.+|++++|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 77 ~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 77 PPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp SCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred Chhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99876 78889999999999875544443333 33433 468999999999985
No 147
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.68 E-value=4.5e-18 Score=161.55 Aligned_cols=116 Identities=19% Similarity=0.252 Sum_probs=77.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
+...+|+++|.+|+|||||+++|+ +... ..+...+++.......+.+++ ..++||||||+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~---~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 92 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFA---DDTY---------------TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSB---CCCC---------------CCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHh---cCCC---------------CCCcCCcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 457899999999999999999995 1100 001112223333333444444 67999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhc---CCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY---GVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~---~~p~ivviNK~D~~~ 221 (571)
.+|...+..+++.+|++|+|+|+.+.........| ..+... ++|+++|+||+|+..
T Consensus 93 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp TTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred HhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 99888788889999999999999886544443333 333332 789999999999864
No 148
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=2.2e-16 Score=150.83 Aligned_cols=116 Identities=13% Similarity=0.009 Sum_probs=77.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++|+........ .. ..+.+... ...+......+.||||||+.+|.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----~~-----------t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~ 87 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVY-----VP-----------TVFENYVA-DIEVDGKQVELALWDTAGQEDYD 87 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-----------------------CCEEEE-EEEETTEEEEEEEEECTTCTTCT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcC-----CC-----------cccceEEE-EEEECCEEEEEEEEECCCcHHHH
Confidence 468999999999999999999842211000 00 01111111 11222223679999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHH--HHHHHHHhc--CCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
.....+++.+|++|+|+|+.+....... ..+..+... ++|+++|+||+|+...
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 88 RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSD 144 (207)
T ss_dssp TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGC
T ss_pred HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcc
Confidence 7778888999999999999864332222 233444443 8999999999998653
No 149
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.68 E-value=3.1e-16 Score=168.37 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=87.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC-CcH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV-DFT 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~-~f~ 169 (571)
.+|+++|.+|+|||||+|+|+.....+ .. ...|+|.+.....+.+++..++||||||+. ++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~---vs--------------~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~ 306 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAI---VT--------------DIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN 306 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCC---CC--------------CSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCc---cC--------------CCCCeeeeeEEEEEecCCeEEEEEECCCccccch
Confidence 689999999999999999998432111 11 113556666666777788999999999998 653
Q ss_pred --------HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 170 --------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 --------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.....+++.+|++|+|+|++++...+..++++.+ .++|+++|+||+|+..
T Consensus 307 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 307 DLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVE 364 (482)
T ss_dssp TTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred hhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccc
Confidence 3456789999999999999988777777777655 4789999999999854
No 150
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=147.27 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=73.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|..|+|||||+++|+...... . ...+ .+.+. .....+......+.||||||+.+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~----~-~~~t-----------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFIS----E-YDPN-----------LEDTY-SSEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCS----C-CCTT-----------CCEEE-EEEEEETTEEEEEEEEECCC---
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCc----c-cCCC-----------cccee-eEEEEECCEEEEEEEEECCCCCc
Confidence 346799999999999999999998432110 0 0000 11111 11122223446789999999988
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh------cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~------~~~p~ivviNK~D~~~ 221 (571)
|.. +...++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 82 ~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 82 PRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred chh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 765 36788999999999999864333332222 33332 4899999999999854
No 151
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.67 E-value=1.3e-16 Score=153.65 Aligned_cols=118 Identities=14% Similarity=0.065 Sum_probs=80.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|..|+|||||+++|+......... .+ .+.+. .....+......+.||||||+.+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~-----~t-----------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 87 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYV-----PT-----------VFENY-TACLETEEQRVELSLWDTSGSPY 87 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCC-----CC-----------SEEEE-EEEEEC--CEEEEEEEEECCSGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcC-----Ce-----------eeeeE-EEEEEECCEEEEEEEEECCCCHh
Confidence 346799999999999999999998432110000 00 11121 11222334557899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhH-HHHH-HHHHhc--CCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVW-RQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~-~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
|......+++.+|++|+|+|+++...... ...| ..+... ++|+++|+||+|+...
T Consensus 88 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGC
T ss_pred HHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 98888888999999999999987544443 2333 444443 7899999999998653
No 152
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.67 E-value=2.6e-16 Score=157.57 Aligned_cols=201 Identities=16% Similarity=0.208 Sum_probs=116.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~ 167 (571)
..+|+++|++|+|||||+|+|+ +........ ++ .......++++......+.+++ ..++||||||+.+
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~---~~~~~~~~~-~~------~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLF---LTDLYSPEY-PG------PSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHS---SSCC----------------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred EEEEEEECCCCCCHHHHHHHHh---CCCccccCC-CC------cccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 5799999999999999999985 211111100 00 0001123344444444555544 4899999999954
Q ss_pred c-------HHHH-------HHHHHh-------------cCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 168 F-------TLEV-------ERALRV-------------LDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 168 f-------~~~~-------~~~l~~-------------~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
+ .... ..++.. +|+++++++.. ++....+...++.+.. ++|+++|+||+|+
T Consensus 78 ~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~ 156 (274)
T 3t5d_A 78 AVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADT 156 (274)
T ss_dssp CSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGG
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCC
Confidence 3 2222 444544 67888888655 5888888888888877 8999999999998
Q ss_pred ccc-chhhhHHHHHHHh---CCcceeee-----------------cc---CCCCCCcceeeecccceeEEecCCCCCcee
Q 008294 220 LGA-NFFRTRDMIVTNL---GAKPLVVQ-----------------LP---VGAEDNFKGVVDLVKMKAIIWSGEELGAKF 275 (571)
Q Consensus 220 ~~~-~~~~~~~~i~~~l---~~~~~~~~-----------------~p---i~~~~~~~~~id~~~~~~~~~~~~~~g~~~ 275 (571)
... +.....+.+.+.+ +....++. +| ++....+....+.+..+.|.|+
T Consensus 157 ~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~~vv~s~~~~~~~~~~~~~r~y~wg-------- 228 (274)
T 3t5d_A 157 LTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWG-------- 228 (274)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSEECCCCCCC--------CEEECSSC--------
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCcEEEEeeeEEeeCCeEEEeeecccc--------
Confidence 753 3444445555544 33222111 11 3333344433455555666553
Q ss_pred eeecccHHHHHHHHHHHHHHH-----HHHhhcCHHHHHHH
Q 008294 276 AYEDIPANLQKMAQEYRSQMI-----ETIVELDDEAMESY 310 (571)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~l~-----e~~~~~~~~l~e~~ 310 (571)
..++++.....+..+|+.|+ |.....++.++|.|
T Consensus 229 -~~~ve~~~~~df~~lr~~l~~~~~~~l~~~t~~~~ye~y 267 (274)
T 3t5d_A 229 -VAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENY 267 (274)
T ss_dssp -EEESSCTTTCSHHHHHHTTTTTTHHHHHHHHHHTHHHHH
T ss_pred -eEEecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445545555667777777 88888888888888
No 153
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.67 E-value=2.8e-16 Score=149.41 Aligned_cols=117 Identities=15% Similarity=-0.008 Sum_probs=78.5
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
...+|+++|.+|+|||||+++|......... ..+ .+.... ....+......+.||||||+.+|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----~~t-----------~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~ 86 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-----VPT-----------VFENYI-ADIEVDGKQVELALWDTAGQEDY 86 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSC-----CCS-----------SCCCCE-EEEEETTEEEEEEEECCCCSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCccc-----CCc-----------ccceEE-EEEEECCEEEEEEEEECCCchhH
Confidence 3578999999999999999999843221100 000 011111 11122223358999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHH--HHHHHHHhc--CCCeEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
......+++.+|++|+|+|+.+....... ..+..+... ++|+++|+||+|+...
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 87777888999999999999864333322 233344444 8999999999998654
No 154
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.66 E-value=5.9e-17 Score=154.20 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=60.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec----CeEEEEEcCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----KHRINIIDTP 163 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~----~~~i~liDTP 163 (571)
....+|+++|++|+|||||+++|+........ ++ ...+..+.....+.++ ...+.|||||
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----------~~-----~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 81 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLK-----------DY-----AMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81 (208)
T ss_dssp EEEEEEEEC--------------------------------------------------CEEEECTTSSEEEEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccC-----------CC-----CCccceEEEEEEEEECCcccEEEEEEEECC
Confidence 34579999999999999999999732000000 00 0011112222333344 4689999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh------cCCCeEEEEecCCccc
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~------~~~p~ivviNK~D~~~ 221 (571)
|+.+|......+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 82 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp TTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred CcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 9999888888889999999999999875443333333 33333 4789999999999854
No 155
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.66 E-value=4e-16 Score=146.15 Aligned_cols=122 Identities=20% Similarity=0.298 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC-----
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH----- 165 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~----- 165 (571)
.+|+++|++|+|||||+++|+... ... ....|+|....... +. .+++|||||+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~---~~~---------------~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~ 59 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK---VRR---------------GKRPGVTRKIIEIE--WK--NHKIIDMPGFGFMMG 59 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC---CSS---------------SSSTTCTTSCEEEE--ET--TEEEEECCCBSCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC---Ccc---------------CCCCCccceeEEEe--cC--CEEEEECCCcccccc
Confidence 589999999999999999997211 100 01123343333222 22 7899999995
Q ss_pred ------CCcHHHHHHHHHh----cCeEEEEEeCCCC-----------CchhHHHHHHHHHhcCCCeEEEEecCCccccch
Q 008294 166 ------VDFTLEVERALRV----LDGAICLFDSVAG-----------VEPQSETVWRQADKYGVPRICFVNKMDRLGANF 224 (571)
Q Consensus 166 ------~~f~~~~~~~l~~----~D~~ilVvda~~g-----------~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~ 224 (571)
..|......+++. +++++.|+|+... ...++.+.+..+...++|+++|+||+|+....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~- 138 (190)
T 2cxx_A 60 LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV- 138 (190)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-
T ss_pred CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-
Confidence 3344444444444 5677777776531 12223345555666789999999999987653
Q ss_pred hhhHHHHHHHh
Q 008294 225 FRTRDMIVTNL 235 (571)
Q Consensus 225 ~~~~~~i~~~l 235 (571)
.+..+++.+.+
T Consensus 139 ~~~~~~~~~~~ 149 (190)
T 2cxx_A 139 QEVINFLAEKF 149 (190)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 23333444333
No 156
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.65 E-value=1.7e-15 Score=140.52 Aligned_cols=109 Identities=16% Similarity=0.087 Sum_probs=71.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|.+|+|||||+++|+...... . ..+ .|... .....+......+.+|||||+.+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-----~-~~t-----------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~- 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-----L-EKT-----------ESEQY-KKEMLVDGQTHLVLIREEAGAPD- 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-----C-SSC-----------SSSEE-EEEEEETTEEEEEEEEECSSSCC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-----c-CCC-----------cceeE-EEEEEECCEEEEEEEEECCCCch-
Confidence 45789999999999999999998422110 0 000 11111 11112222336789999999987
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HH---Hh---cCCCeEEEEecCCcc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QA---DK---YGVPRICFVNKMDRL 220 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~---~~---~~~p~ivviNK~D~~ 220 (571)
..+++.+|++|+|+|+++.........|. .+ .. .++|+++|+||+|+.
T Consensus 67 ----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 67 ----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp ----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred ----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 45778899999999998754444443331 22 22 378999999999984
No 157
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.65 E-value=2.8e-16 Score=147.10 Aligned_cols=117 Identities=14% Similarity=0.016 Sum_probs=78.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|++|+|||||+++|+......... .+ .+... .....+......+.||||||+.+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-----~t-----------~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~ 67 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV-----PT-----------VFENY-TASFEIDTQRIELSLWDTSGSPY 67 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC-----CC-----------SEEEE-EEEEECSSCEEEEEEEEECCSGG
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCC-----Cc-----------cceeE-EEEEEECCEEEEEEEEECCCChh
Confidence 346789999999999999999998432110000 00 01111 11112223456899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
|......+++.+|++|+|+|+++....... ..| ..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 877777788999999999999875433332 233 33333 3789999999999864
No 158
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.64 E-value=2e-16 Score=169.05 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=76.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+|+|+.....+. .. ..|+|.+.....+.+++..++||||||+.++.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v---~~--------------~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~ 286 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIV---TD--------------LPGTTRDVVESQLVVGGIPVQVLDTAGIRETS 286 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCC---SC--------------CTTCCHHHHHHEEEETTEEEEECC--------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccc---cC--------------CCCeeEEEEEEEEEECCEEEEEEECCccccch
Confidence 35799999999999999999985432111 00 12344444444556688999999999997764
Q ss_pred HHHHH--------HHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 170 LEVER--------ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~--------~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
..+.. .++.+|++++|+|++++...+..+++..+.. .|+++|+||+|+...
T Consensus 287 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 287 DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEK 345 (462)
T ss_dssp ------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSCG
T ss_pred hHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCcc
Confidence 43322 4677899999999999888888777766643 799999999998754
No 159
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.63 E-value=1.1e-16 Score=165.34 Aligned_cols=240 Identities=14% Similarity=0.089 Sum_probs=142.3
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHh---cCCcceeeeeecCccc------ccchhhhh----hhceeEeec-------
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTAT------MDWMEQEQ----ERGITITSA------- 146 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~g~~~------~d~~~~e~----~~g~t~~~~------- 146 (571)
..+...|+++|++|+|||||+++|... .+........+.+++. .+....+. .++.-....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 345789999999999999999999733 2222222222222211 11111100 111100000
Q ss_pred --------eEEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 147 --------ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 147 --------~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
...+.+.++.++||||||+.++... ..+.+|++++|+|+..+...+.... ...++|.++|+||+|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~D 205 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDD 205 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCC
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCC
Confidence 0011256889999999999886544 4689999999999976533221110 113578999999999
Q ss_pred cccc-chhhhHHHHHHHhCC-c-----ceeeeccCC--CCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHH
Q 008294 219 RLGA-NFFRTRDMIVTNLGA-K-----PLVVQLPVG--AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQ 289 (571)
Q Consensus 219 ~~~~-~~~~~~~~i~~~l~~-~-----~~~~~~pi~--~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 289 (571)
+... +....++++++.++. . ..+..+|+. .+.++.++++.+.+....|.. + ..+|+ ....
T Consensus 206 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~---~-----~~~~~---~r~~ 274 (341)
T 2p67_A 206 GDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTA---S-----GRLQQ---VRQQ 274 (341)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHH---T-----THHHH---HHHH
T ss_pred CCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHh---C-----ChHHH---HHHH
Confidence 9764 455555666654321 1 023345554 567777877777654432311 1 12222 2233
Q ss_pred HHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHH
Q 008294 290 EYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVD 357 (571)
Q Consensus 290 ~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~ 357 (571)
..+..+.|.+ +++++++|+++ ++.+++...+++++..+.++|++| .+.|++.+..
T Consensus 275 ~~~~~~~e~i---~e~l~~~~~~~--~~~~~~~~~l~~~v~~~~~~P~~~--------~~~~~~~~~~ 329 (341)
T 2p67_A 275 QSVEWLRKQT---EEEVLNHLFAN--EDFDRYYRQTLLAVKNNTLSPRTG--------LRQLSEFIQT 329 (341)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHC--HHHHHHHHHHHHHHHTTSSCHHHH--------HHHHHHHHHC
T ss_pred HHHHHHHHHH---HHHHHHHHHhC--cchhHHHHHHHHHHHhCCCCHHHH--------HHHHHHHHhh
Confidence 4566666664 78999999995 888899999999999999999975 3567776654
No 160
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.63 E-value=5.5e-16 Score=148.19 Aligned_cols=117 Identities=14% Similarity=0.016 Sum_probs=77.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|.+|+|||||+++|+......... .+ .+... .....+......+.||||||+.+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~-----~t-----------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 88 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV-----PT-----------VFENY-TASFEIDTQRIELSLWDTSGSPY 88 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC-----CC-----------SEEEE-EEEEESSSSEEEEEEEEECCSGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC-----Cc-----------cceeE-EEEEEECCEEEEEEEEeCCCcHh
Confidence 346799999999999999999998432110000 00 01111 11112222357899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
|......+++.+|++|+|+|+++....... ..| ..+.. .++|+++|+||+|+..
T Consensus 89 ~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 877777788999999999999874433332 223 33333 3789999999999864
No 161
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.63 E-value=1.5e-16 Score=155.82 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=87.0
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
.+....++|+++|++|+|||||+|+|+.... ... .....++|.......+.+.+..++||||||
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~---~~~-------------~~~~~~~t~~~~~~~~~~~~~~i~liDTpG 87 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKV---FHS-------------GTAAKSITKKCEKRSSSWKETELVVVDTPG 87 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCC---SCC--------------------CCSCEEEEEEETTEEEEEEECCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCc---Ccc-------------CCCCCceeeeEEEEEEEeCCceEEEEECCC
Confidence 3445678999999999999999999972111 000 011124566666667788899999999999
Q ss_pred CCCc-------HHHHHHH----HHhcCeEEEEEeCCCCCchhHHHHHHHHH-----hcCCCeEEEEecCCccccc-hh--
Q 008294 165 HVDF-------TLEVERA----LRVLDGAICLFDSVAGVEPQSETVWRQAD-----KYGVPRICFVNKMDRLGAN-FF-- 225 (571)
Q Consensus 165 ~~~f-------~~~~~~~----l~~~D~~ilVvda~~g~~~~~~~~~~~~~-----~~~~p~ivviNK~D~~~~~-~~-- 225 (571)
+.+. ..++... .+.+|++|+|+|+.. ........+..+. ....|+++|+||+|+.... ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~ 166 (239)
T 3lxx_A 88 IFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDY 166 (239)
T ss_dssp CC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------
T ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHH
Confidence 8753 2233333 345699999999974 3444444443332 2356999999999986543 22
Q ss_pred -----hhHHHHHHHhCCcceeeecc
Q 008294 226 -----RTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 226 -----~~~~~i~~~l~~~~~~~~~p 245 (571)
+.++++.+.++.....+..+
T Consensus 167 i~~~~~~l~~l~~~~~~~~~~~~~~ 191 (239)
T 3lxx_A 167 LREAPEDIQDLMDIFGDRYCALNNK 191 (239)
T ss_dssp ----CHHHHHHHHHHSSSEEECCTT
T ss_pred HHhchHHHHHHHHHcCCEEEEEECC
Confidence 24566666666654444333
No 162
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.62 E-value=3.6e-15 Score=151.68 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=84.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCCc
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDF 168 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~f 168 (571)
..+|+++|.+|+|||||+++|+...... .....|.|+......+.+ ++..+++|||||+.+|
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~-----------------~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~ 65 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAF-----------------DTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF 65 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTG-----------------GGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc-----------------cccCcCCccceEEEEEEeCCceEEEEEECCCcHHH
Confidence 4689999999999999999997211110 111235566665555554 6789999999999988
Q ss_pred -----HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH----HHHh--cCCCeEEEEecCCcccc
Q 008294 169 -----TLEVERALRVLDGAICLFDSVAGVEPQSETVWR----QADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 -----~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~----~~~~--~~~p~ivviNK~D~~~~ 222 (571)
.......++.+|++|+|+|+++.........|. .+.. .++|+++|+||+|+...
T Consensus 66 ~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 66 MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 445667788999999999999876555544432 2222 28999999999998763
No 163
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.61 E-value=1.4e-15 Score=156.40 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=77.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCCCCCC-
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVD- 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTPG~~~- 167 (571)
+..|+++|.+|||||||+++|... ..... + ....|.......+.+.+ ..++||||||+.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~---~~~i~---------~------~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~ 219 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSA---KPKIA---------D------YHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 219 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEE---CCEES---------S------TTSSCCCCCEEEEECSSSCEEEEEEHHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcC---CCccc---------c------CCccccCceEEEEEeCCCceEEEecCCCCccc
Confidence 568999999999999999999521 11110 1 11334444444555554 7899999999643
Q ss_pred ------cHHHHHHHHHhcCeEEEEEeCCC---CCchhH-HHHHHHHHh-----cCCCeEEEEecCCccc
Q 008294 168 ------FTLEVERALRVLDGAICLFDSVA---GVEPQS-ETVWRQADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 ------f~~~~~~~l~~~D~~ilVvda~~---g~~~~~-~~~~~~~~~-----~~~p~ivviNK~D~~~ 221 (571)
+.....+.+..+|++|+|+|+++ ...... ..++..+.. .++|+++|+||+|+..
T Consensus 220 a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 220 AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp TTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred ccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 44566677788999999999976 222222 233344544 3789999999999864
No 164
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.61 E-value=1.7e-15 Score=154.39 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=55.6
Q ss_pred cCeEEEEEcCCCCCC-------------cHHHHHHHHHhcCeEEEEEeC-CCCCchhH-HHHHHHHHhcCCCeEEEEecC
Q 008294 153 NKHRINIIDTPGHVD-------------FTLEVERALRVLDGAICLFDS-VAGVEPQS-ETVWRQADKYGVPRICFVNKM 217 (571)
Q Consensus 153 ~~~~i~liDTPG~~~-------------f~~~~~~~l~~~D~~ilVvda-~~g~~~~~-~~~~~~~~~~~~p~ivviNK~ 217 (571)
....++||||||+.+ +...+..+++.+|++++|+|+ ..+..... ..++..+...++|+++|+||+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 457899999999865 456677889999999999997 55555443 467777777899999999999
Q ss_pred Ccccc
Q 008294 218 DRLGA 222 (571)
Q Consensus 218 D~~~~ 222 (571)
|+...
T Consensus 209 Dl~~~ 213 (315)
T 1jwy_B 209 DLMDK 213 (315)
T ss_dssp TSSCS
T ss_pred ccCCc
Confidence 98653
No 165
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.40 E-value=5.2e-17 Score=154.75 Aligned_cols=118 Identities=15% Similarity=0.019 Sum_probs=79.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|.+|+|||||+++|+......... .+ . +... .....+......+.+|||||+.+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-----~t-~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-----PT-V----------FDNY-SANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 446789999999999999999997321100000 00 0 0000 11112223456778999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH--HHHHHHHhc--CCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
|......+++.+|++|+|+|+++....... ..+..+... ++|+++|+||+|+...
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
Confidence 988888899999999999999876544433 223334433 7999999999998643
No 166
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.60 E-value=2.8e-15 Score=151.57 Aligned_cols=136 Identities=17% Similarity=0.195 Sum_probs=84.3
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcce--eeeeec-------------------Ccccccchh--hh------h
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVHE-------------------GTATMDWME--QE------Q 137 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~--~g~~~~-------------------g~~~~d~~~--~e------~ 137 (571)
....++|+++|.+|+|||||+|+|+........ ..+..+ |..+.+... .+ .
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 345689999999999999999999833221000 000001 100011110 00 0
Q ss_pred h----hceeEeeceEEEeec-CeEEEEEcCCCCCC-------------cHHHHHHHHHhcCeEE-EEEeCCCCCchhHH-
Q 008294 138 E----RGITITSAATTTYWN-KHRINIIDTPGHVD-------------FTLEVERALRVLDGAI-CLFDSVAGVEPQSE- 197 (571)
Q Consensus 138 ~----~g~t~~~~~~~~~~~-~~~i~liDTPG~~~-------------f~~~~~~~l~~~D~~i-lVvda~~g~~~~~~- 197 (571)
- .|++.......+... ...++||||||+.+ +...+..+++.+|.+| +|+|+..+...+..
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0 233322222222222 47899999999752 3455667788888777 69999988777764
Q ss_pred HHHHHHHhcCCCeEEEEecCCcccc
Q 008294 198 TVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 198 ~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.+++.+...++|+++|+||+|+...
T Consensus 183 ~~~~~~~~~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 183 KIAKEVDPQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHHCTTCSSEEEEEECGGGSCT
T ss_pred HHHHHhCCCCCeEEEEEEccccCCC
Confidence 4667777778999999999998653
No 167
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=5e-15 Score=142.24 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=71.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|.+|+|||||+++|+.....+. ...+ ..|.+.......+......+.+|||+|...
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~---~~~~------------~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~ 99 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMD---SDCE------------VLGEDTYERTLMVDGESATIILLDMWENKG 99 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTC---CC---------------CCTTEEEEEEEETTEEEEEEEECCTTTTH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCC---CcCC------------ccceeeEEEEEEECCeeeEEEEeecCCCcc
Confidence 3467899999999999999999972111110 0000 012222112222222234678999999876
Q ss_pred c-HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCccc
Q 008294 168 F-TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f-~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~ 221 (571)
. .......++.+|++|+|+|.++.........| ..+.. .++|+++|+||+|+..
T Consensus 100 ~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 100 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp HHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred hhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 3 22223345678999999999864333322223 33332 3799999999999854
No 168
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.60 E-value=4.4e-15 Score=152.05 Aligned_cols=116 Identities=14% Similarity=0.068 Sum_probs=79.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
....+|+++|.+|+|||||+++++........ . +++.......+..++ ..+.||||||+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~-----~--------------~t~~~~~~~~~~~~~~~~~~~l~Dt~G~ 213 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEY-----I--------------PTVFDNYSANVMVDGKPVNLGLWDTAGL 213 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSC-----C--------------CCSEEEEEEEEEETTEEEEEEEEEECCC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCccc-----C--------------CcccceeEEEEEECCEEEEEEEEeCCCc
Confidence 34578999999999999999999743211000 0 111111122223333 45669999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HH-HHHHhc--CCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VW-RQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~-~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
.+|......+++.+|++++|+|+++........ .| ..+... ++|+++|+||+|+...
T Consensus 214 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred hhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 999888888889999999999998754443332 22 344433 8999999999998643
No 169
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.58 E-value=2.6e-14 Score=148.48 Aligned_cols=117 Identities=21% Similarity=0.227 Sum_probs=76.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|.+|+|||||+|+|+ +.....+. ..+.|.......+...+..+.+|||||+.+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~---~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 226 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALT---TAKPEIAS---------------YPFTTRGINVGQFEDGYFRYQIIDTPGLLD 226 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHC---SSCCEEEC---------------CTTCSSCEEEEEEEETTEEEEEEECTTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh---CCCCccCC---------------CCCeeeceeEEEEEecCceEEEEeCCCccc
Confidence 456799999999999999999995 32211111 112344444445556778999999999866
Q ss_pred cH--------HHHHHHH-HhcCeEEEEEeCCCCC--chhHH-HHHHHHHh-c-CCCeEEEEecCCcccc
Q 008294 168 FT--------LEVERAL-RVLDGAICLFDSVAGV--EPQSE-TVWRQADK-Y-GVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~--------~~~~~~l-~~~D~~ilVvda~~g~--~~~~~-~~~~~~~~-~-~~p~ivviNK~D~~~~ 222 (571)
+. .....++ ..+|++++|+|+.... ..... ..+..+.. . ++|+++|+||+|+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 227 RPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADE 295 (357)
T ss_dssp SCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCH
T ss_pred cchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCCh
Confidence 42 1222222 3589999999987643 33332 33333333 2 8999999999998643
No 170
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.57 E-value=2.9e-15 Score=140.34 Aligned_cols=118 Identities=15% Similarity=0.188 Sum_probs=71.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEE---eecCeEEEEEcCCCCCC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT---YWNKHRINIIDTPGHVD 167 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~---~~~~~~i~liDTPG~~~ 167 (571)
.+|+++|.+|+|||||+++|+..... ..+.. ....|+........+ ......+.+|||||+.+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~--~~~~~------------~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKS--DLGMQ------------SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE 68 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-------------------------CSEEEEEEEC---------CEEEEEEECSHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCc--cCCCc------------ceeccEEeEEeeeccccCCCCceEEEEEecCCCHH
Confidence 47999999999999999999621000 00000 001122211111111 11457899999999988
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCc-hhHHHHH-HHHHh--cCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVE-PQSETVW-RQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~-~~~~~~~-~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
|......+++.+|++++|+|.+++.. ......| ..+.. .++|+++|+||+|+...
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 69 FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDE 127 (184)
T ss_dssp HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCH
T ss_pred HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccc
Confidence 87767778889999999999987532 1222222 22222 37899999999998653
No 171
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.56 E-value=3.4e-14 Score=134.16 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=70.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC-
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~- 167 (571)
...+|+++|.+|+|||||+++|+........ ++ ...|.+.......+......+.+|||+|...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~-----------~~----~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~ 69 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDS-----------DX----EVLGEDTYERTLMVDGESATIILLDMWENKGE 69 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-------------------GGGCTTEEEEEEEETTEEEEEEEECCCCC---
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCc-----------cc----cccceeEEEEEEEECCeEEEEEEEEeccCcch
Confidence 3578999999999999999999743221110 00 0012222122222222234678999999765
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~ 221 (571)
+.......++.+|++++|+|.++.........| ..+.. .++|+++|.||+|+..
T Consensus 70 ~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 70 NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp -CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred hhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 222234567889999999999864333332222 22332 3789999999999753
No 172
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.55 E-value=4.1e-14 Score=146.93 Aligned_cols=116 Identities=20% Similarity=0.258 Sum_probs=75.5
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
..+.|+++|++|+|||||+|+|. +.... .+...+.|.+.....+.+++..+.+|||||+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~---~~~~~---------------~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~ 239 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLT---GLTQK---------------VDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG 239 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHH---CC--------------------------CCSCEEEEEETTEEEEEEECCCBCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHH---CCCcc---------------ccCCcccccCCEEEEEEECCEEEEEEeCCCchhc
Confidence 35679999999999999999996 22111 1112345666666667778889999999997431
Q ss_pred --------HHHHHHHHHhcCeEEEEEeCCCCC--chhHH-HHHHHHHh---cCCCeEEEEecCCcccc
Q 008294 169 --------TLEVERALRVLDGAICLFDSVAGV--EPQSE-TVWRQADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 --------~~~~~~~l~~~D~~ilVvda~~g~--~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~ 222 (571)
...+...+..+|++++|+|+++.. ..... .....+.. .++|+++|.||+|+...
T Consensus 240 lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 240 IPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp CCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred CCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 122344578899999999998754 11111 12223333 57899999999998643
No 173
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.55 E-value=3.3e-14 Score=136.53 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=78.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+.++|+++|++|+|||||+++|+....... ... + ..++.. .+....+++|||||+.+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-~~~---------~-------~~~~~~-----~~~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVS---------Q-------EPLSAA-----DYDGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCC---------S-------SCEEET-----TGGGSSCEEEECCCCGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-eee---------c-------CceEEE-----EeeCceEEEEECCCcHH
Confidence 4467999999999999999999984321100 000 0 001111 11457899999999999
Q ss_pred cHHHHHHHHHh----cCeEEEEEeCC---CCCchhHHHHHHHHHh------cCCCeEEEEecCCccccc
Q 008294 168 FTLEVERALRV----LDGAICLFDSV---AGVEPQSETVWRQADK------YGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 168 f~~~~~~~l~~----~D~~ilVvda~---~g~~~~~~~~~~~~~~------~~~p~ivviNK~D~~~~~ 223 (571)
|...+..+++. +|++|+|+|+. +........+...+.. .++|+++|+||+|+....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 68 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp GTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 98888888887 89999999998 3333333333233221 589999999999997654
No 174
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.53 E-value=2.7e-14 Score=156.42 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=79.0
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeec------eEEE--eecCeEEE
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA------ATTT--YWNKHRIN 158 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~------~~~~--~~~~~~i~ 158 (571)
..+..+|+++|.+|+|||||+++|..... .. . .....|.++... ...+ ...+..++
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~--~~--~------------~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~ 101 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETF--DP--K------------ESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC---------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCC--CC--C------------CCCccceEEEEeccccccceeecCCCceEEEE
Confidence 44568999999999999999999972211 00 0 000111111110 0000 12367899
Q ss_pred EEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcC--CCeEEEEecCCccc
Q 008294 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG--VPRICFVNKMDRLG 221 (571)
Q Consensus 159 liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~--~p~ivviNK~D~~~ 221 (571)
+|||||+..|.......++.+|++|+|+|++.. ......+..+..++ +|+++|+||+|+..
T Consensus 102 i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp EECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred EEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 999999999888778889999999999999764 34444555666544 99999999999864
No 175
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.52 E-value=7.7e-14 Score=132.23 Aligned_cols=115 Identities=14% Similarity=0.145 Sum_probs=76.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~ 166 (571)
...+|+++|+.|+|||||+++|+........ ....|.+... ..+.+++ ..+.+|||||+.
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~----------------~~t~~~~~~~--~~i~~~g~~~~~~i~Dt~g~~ 65 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES----------------KSTIGVEFAT--RSIQVDGKTIKAQIWDTAGQE 65 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCCSCEEEE--EEEEETTEEEEEEEEECSSGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEE--EEEEECCEEEEEEEEECCCch
Confidence 3578999999999999999999732111000 0001222222 2333444 567899999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.|.......++.+|++++|+|..+.........| ..+.. .+.|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp GTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred hhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 8876677778899999999999865433332222 22322 4688999999999854
No 176
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.51 E-value=5.3e-14 Score=145.95 Aligned_cols=128 Identities=17% Similarity=0.121 Sum_probs=74.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCccccc------ch---hhhhhhceeEeeceE-------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTATMD------WM---EQEQERGITITSAAT------- 148 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~~~~d------~~---~~e~~~g~t~~~~~~------- 148 (571)
.+.++|+++|++|+|||||+++|.... |........+++..... .. ......++.+.....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 457899999999999999999997432 32222222222222110 00 000111222211111
Q ss_pred ---------EEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 149 ---------TTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 149 ---------~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
.+.+.++.+.||||||... .....+..+|++++|+|+..+...+... ....++|.++|+||+|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~ivVlNK~Dl 229 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIVVVNKADG 229 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEEEEECCCG
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEEEEECCCC
Confidence 1123578999999999765 2334458899999999997654432211 01134699999999998
Q ss_pred ccc
Q 008294 220 LGA 222 (571)
Q Consensus 220 ~~~ 222 (571)
...
T Consensus 230 ~~~ 232 (355)
T 3p32_A 230 EHH 232 (355)
T ss_dssp GGH
T ss_pred cCh
Confidence 643
No 177
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.51 E-value=1.4e-13 Score=154.70 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCCC---cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHhcCCCeEEEEecCCcccc
Q 008294 155 HRINIIDTPGHVD---FTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 155 ~~i~liDTPG~~~---f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~~~~p~ivviNK~D~~~~ 222 (571)
..++||||||+.+ ....+..+++.+|++|+|+|+..+........|. .+...+.|+++|+||+|+...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 4699999999765 4556678889999999999999988887777775 455678999999999998643
No 178
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.50 E-value=1.6e-13 Score=130.88 Aligned_cols=118 Identities=15% Similarity=0.191 Sum_probs=75.8
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+.....+|+++|++|+|||||+++|+ |.... .. .....|.+..... +.+++ .+.+|||||+
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~---g~~~~-~~------------~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~ 82 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLT---NQKSL-AR------------TSKTPGRTQLINL--FEVAD-GKRLVDLPGY 82 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTC---CC--------------------------CCEEE--EEEET-TEEEEECCCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHh---CCCcc-cc------------ccCCCccceeeEE--EEecC-CEEEEECcCC
Confidence 34456789999999999999999995 32100 00 0112343433222 22233 6889999998
Q ss_pred CCc----------HHHHHHHH---HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 166 VDF----------TLEVERAL---RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f----------~~~~~~~l---~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.+. ...+...+ +.+|++++|+|+..+......+....+...++|.++|.||+|+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 83 GYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS 152 (210)
T ss_dssp C------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH
T ss_pred cccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc
Confidence 642 22222333 4679999999999887766666667777889999999999998653
No 179
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.48 E-value=1.1e-13 Score=137.45 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=80.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+|+|+...... . ....++|.......+.+++..++||||||+.+|
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~--~---------------~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~ 97 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVR--V---------------SPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSC--C---------------CSSCC-CCCCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcc--c---------------CCCCCcceeeEEEEEEECCeeEEEEECCCCCCc
Confidence 46899999999999999999998322110 0 011344666666677788999999999999887
Q ss_pred HHH---HHHHHH------hcCeEEEEEeCCC-CCchhHHHHHHHHHhc-----CCCeEEEEecCCccc
Q 008294 169 TLE---VERALR------VLDGAICLFDSVA-GVEPQSETVWRQADKY-----GVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~---~~~~l~------~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~ 221 (571)
... ..+.+. .+|++++|+|... .........+..+... ..|+++|+||+|+..
T Consensus 98 ~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 98 GYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 332 222232 6799999987754 3444444555555443 248999999999853
No 180
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.47 E-value=4.9e-13 Score=133.31 Aligned_cols=118 Identities=16% Similarity=0.102 Sum_probs=80.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|++|+|||||+|+|+.... ...+. ..++|.......+...+..++||||||+.+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~--~~~~~---------------~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~ 99 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERV--VSISP---------------FQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 99 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCC--SCCCS---------------SSCCCSSCEEEEEEETTEEEEEEECCCSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCc--ccccC---------------CCCcceeeEEEEEeeCCeEEEEEECCCCCC
Confidence 3468999999999999999999973211 00000 123444444556677889999999999977
Q ss_pred cH---HHHHHHHH------hcCeEEEEEeCCC-CCchhHHHHHHHHHhc-C----CCeEEEEecCCcccc
Q 008294 168 FT---LEVERALR------VLDGAICLFDSVA-GVEPQSETVWRQADKY-G----VPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~---~~~~~~l~------~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-~----~p~ivviNK~D~~~~ 222 (571)
+. ......+. .+|++++|+|+.. .........+..+... + +|+++|+||+|+...
T Consensus 100 ~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 100 GGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 63 22333322 6899999988754 4555555566555432 3 699999999998643
No 181
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.46 E-value=3.9e-13 Score=126.69 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=76.4
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG 164 (571)
.+...+|+++|+.|+|||||+++|......... ...++.......+.+++ ..+.+|||||
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~------------------~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g 87 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES------------------KSTIGVEFATRSIQVDGKTIKAQIWDTAG 87 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSC------------------CCCCSEEEEEEEEEETTEEEEEEEEEECS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC------------------CCccceEEEEEEEEECCEEEEEEEEECCC
Confidence 345689999999999999999999732211000 01112222223334444 4566799999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
+.++...+...++.+|++++|+|..+.........| ..+.. .+.|+++++||+|+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 88 LERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp CCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 998877777788889999999998764332222222 22322 3688999999999854
No 182
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.45 E-value=1.7e-13 Score=131.86 Aligned_cols=124 Identities=19% Similarity=0.258 Sum_probs=73.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeee--ecCcccccchhhhhhhceeEeeceE----EE----------ee
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQEQERGITITSAAT----TT----------YW 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~--~~g~~~~d~~~~e~~~g~t~~~~~~----~~----------~~ 152 (571)
+.++|+++|++|+|||||+++|+...+...+.+.+ +.+.+ .|.... ...|.++..... .+ .+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~-~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSK-ADYERV-RRFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCH-HHHHHH-HTTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCc-hhHHHH-HhCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 46899999999999999999998664433222222 22211 111111 122333111100 11 23
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.+..+.+|||+|+.+..... ....+.+++|+|+..+... .+......++|.++|+||+|+..
T Consensus 107 ~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAE 168 (221)
T ss_dssp TTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHH
T ss_pred CCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCc
Confidence 56789999999952211000 0246889999999887432 23333345789999999999853
No 183
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.1e-13 Score=130.07 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=79.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+.++|+++|+.|+|||||+++|+...... .... ...+++. .+.+..+.+|||||+.+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~-~~~~--------------~~~~~~~-------~~~~~~~~l~Dt~G~~~ 103 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVS--------------QEPLSAA-------DYDGSGVTLVDFPGHVK 103 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------CCCCTTCSEEEETTCCB
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc-cccc--------------CCCceee-------eecCCeEEEEECCCCch
Confidence 456799999999999999999997332110 0000 0011111 12567899999999998
Q ss_pred cHHHHHHHHHh----cCeEEEEEeCCCCCchh-H-HHHHHHHH-------hcCCCeEEEEecCCccccc-hhhhHHHHHH
Q 008294 168 FTLEVERALRV----LDGAICLFDSVAGVEPQ-S-ETVWRQAD-------KYGVPRICFVNKMDRLGAN-FFRTRDMIVT 233 (571)
Q Consensus 168 f~~~~~~~l~~----~D~~ilVvda~~g~~~~-~-~~~~~~~~-------~~~~p~ivviNK~D~~~~~-~~~~~~~i~~ 233 (571)
|...+...++. +|++|+|+|+....... . ...+..+. ..++|+++|+||+|+.... ..++.+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~ 183 (193)
T 2ged_A 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 183 (193)
T ss_dssp SSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHH
Confidence 86666666665 89999999998221111 1 11122221 1389999999999997643 4555555554
Q ss_pred Hh
Q 008294 234 NL 235 (571)
Q Consensus 234 ~l 235 (571)
.+
T Consensus 184 ~l 185 (193)
T 2ged_A 184 EI 185 (193)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 184
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.44 E-value=8.5e-13 Score=133.57 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=75.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH-
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL- 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~- 170 (571)
+|+++|..|+|||||++++.... .... ....+.|+......+. ....++||||||+++|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~--~~~~---------------~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~ 62 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNM--QPLD---------------TLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP 62 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCC--CSGG---------------GTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC
T ss_pred CEEEECCCCCCHHHHHHHHHcCC--CCCc---------------cceecCeeeeeeEEEc-cEEEEEEEECCCchhccch
Confidence 47899999999999999875111 0000 0001223333333332 347899999999999964
Q ss_pred --HHHHHHHhcCeEEEEEeCCCCCchhHHHHHH----HHH--hcCCCeEEEEecCCcccc
Q 008294 171 --EVERALRVLDGAICLFDSVAGVEPQSETVWR----QAD--KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 171 --~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~----~~~--~~~~p~ivviNK~D~~~~ 222 (571)
....+++.++++|+|+|+++. .......|. .+. ..++|+++|+||+|+...
T Consensus 63 ~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 63 SYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp SHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred hhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 467889999999999999986 333333332 222 247899999999998754
No 185
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.43 E-value=1.9e-13 Score=141.80 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=79.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcce--eeeeecC-------------------cccccchh--hh------hh-
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVHEG-------------------TATMDWME--QE------QE- 138 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~--~g~~~~g-------------------~~~~d~~~--~e------~~- 138 (571)
..+.|+++|.+|+|||||+|+|+........ .....++ ..+.+... .+ .-
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999732211000 0000011 00011111 11 11
Q ss_pred ---hceeEeeceEEEeec-CeEEEEEcCCCCCC-------------cHHHHHHHHHhc-CeEEEEEeCCCCCchhHH-HH
Q 008294 139 ---RGITITSAATTTYWN-KHRINIIDTPGHVD-------------FTLEVERALRVL-DGAICLFDSVAGVEPQSE-TV 199 (571)
Q Consensus 139 ---~g~t~~~~~~~~~~~-~~~i~liDTPG~~~-------------f~~~~~~~l~~~-D~~ilVvda~~g~~~~~~-~~ 199 (571)
.|+........+... ...++||||||+.+ +...+..+++.+ +++++|+|+..++..+.. .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 344333333333332 57899999999753 233445556555 456667788777766655 36
Q ss_pred HHHHHhcCCCeEEEEecCCcccc
Q 008294 200 WRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 200 ~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
++.+...+.|+++|+||+|+...
T Consensus 190 ~~~~~~~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 190 AKEVDPQGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHCTTCTTEEEEEECGGGSCT
T ss_pred HHHhCcCCCceEEEeccccccCc
Confidence 67777778999999999998653
No 186
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.43 E-value=4.5e-13 Score=139.14 Aligned_cols=123 Identities=16% Similarity=0.180 Sum_probs=63.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~ 167 (571)
..+|+++|++|+|||||+++|+ +....... .......+...++++......+.+.+ ..+++|||||+.+
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~---~~~~~~~~------~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLF---LTDLYPER------VIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHT---TCCC---------------------CEEEEEEEEC----CEEEEEEEEC------
T ss_pred CEEEEEEcCCCCCHHHHHHHHh---CCCCCCCC------cccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccc
Confidence 4789999999999999999985 21110000 00111111122333333333333343 3799999999954
Q ss_pred cHH-------HHH-------HHHHhc-------------CeEEEEEeC-CCCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 168 FTL-------EVE-------RALRVL-------------DGAICLFDS-VAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 168 f~~-------~~~-------~~l~~~-------------D~~ilVvda-~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
+.. .+. .+++.+ |+++++|+. .+++.......+..+ ..++|+|+|+||+|+
T Consensus 108 ~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl 186 (361)
T 2qag_A 108 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADT 186 (361)
T ss_dssp --------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSS
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCC
Confidence 322 121 444443 357777776 567777666555554 367999999999998
Q ss_pred ccc
Q 008294 220 LGA 222 (571)
Q Consensus 220 ~~~ 222 (571)
...
T Consensus 187 ~~~ 189 (361)
T 2qag_A 187 LTL 189 (361)
T ss_dssp SCH
T ss_pred CCH
Confidence 653
No 187
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.42 E-value=4e-13 Score=146.87 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=91.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCccc---ccch--------------hhhh-----hhceeEee
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTAT---MDWM--------------EQEQ-----ERGITITS 145 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~---~d~~--------------~~e~-----~~g~t~~~ 145 (571)
...+.|+|+|++|+|||||+|+|+.........+. .++++. ..+. ..+. ..|.....
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~-~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGP-EPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCS-SCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCC-CCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 45789999999999999999999843221000110 111100 0000 0000 00101111
Q ss_pred ceEEEeecC---eEEEEEcCCCCCC-----------cHHHHHHHHHhcCeEEEEEeCCC-CCchhHHHHHHHHHhcCCCe
Q 008294 146 AATTTYWNK---HRINIIDTPGHVD-----------FTLEVERALRVLDGAICLFDSVA-GVEPQSETVWRQADKYGVPR 210 (571)
Q Consensus 146 ~~~~~~~~~---~~i~liDTPG~~~-----------f~~~~~~~l~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~~p~ 210 (571)
.+..+.+.+ ..++||||||+.+ |...+..++..+|++|+|+|+.+ +.......++..+...+.|+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pv 221 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKI 221 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGE
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCE
Confidence 222333332 4799999999986 66778888999999999999987 57778888888888888999
Q ss_pred EEEEecCCcccc-chhhhHHHHH
Q 008294 211 ICFVNKMDRLGA-NFFRTRDMIV 232 (571)
Q Consensus 211 ivviNK~D~~~~-~~~~~~~~i~ 232 (571)
++|+||+|+... +..+++..+.
T Consensus 222 ilVlNK~Dl~~~~el~~~~~~l~ 244 (550)
T 2qpt_A 222 RVVLNKADMVETQQLMRVYGALM 244 (550)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhh
Confidence 999999999753 3444444443
No 188
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.41 E-value=2.9e-13 Score=133.85 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=29.8
Q ss_pred hcCeEEEEEeCCCC--CchhHHHHH-HHH----HhcCCCeEEEEecCCccc
Q 008294 178 VLDGAICLFDSVAG--VEPQSETVW-RQA----DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 178 ~~D~~ilVvda~~g--~~~~~~~~~-~~~----~~~~~p~ivviNK~D~~~ 221 (571)
.+|++|+|+|+++. ........| ..+ ...++|+++|+||+|+..
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 212 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGV 212 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccc
Confidence 58999999999875 333332222 222 235799999999999854
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.39 E-value=1.1e-13 Score=145.24 Aligned_cols=82 Identities=22% Similarity=0.286 Sum_probs=45.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEE---------------------
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT--------------------- 150 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~--------------------- 150 (571)
+|+|+|.+|+|||||+|+|+.. ....+. . .++|+.......
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~---~~~~~~-~--------------p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~ 63 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV---DVEIAN-Y--------------PFTTIEANVGVTYAITDHPCKELGCSPNPQNYE 63 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC---CCcccC-C--------------CCcccCCceEEEeeccCCchHHhhhhccccccc
Confidence 6899999999999999999722 111111 1 122222222211
Q ss_pred eec---CeEEEEEcCCCCCCcHH-------HHHHHHHhcCeEEEEEeCCCC
Q 008294 151 YWN---KHRINIIDTPGHVDFTL-------EVERALRVLDGAICLFDSVAG 191 (571)
Q Consensus 151 ~~~---~~~i~liDTPG~~~f~~-------~~~~~l~~~D~~ilVvda~~g 191 (571)
.++ ...++||||||+.+... ....+++.+|++++|+|+.++
T Consensus 64 ~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 64 YRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred ccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 011 35799999999875321 122346889999999999875
No 190
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.38 E-value=9.4e-13 Score=147.05 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=84.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeee-------------------e--ecCcccccchhh--h------h--
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-------------------V--HEGTATMDWMEQ--E------Q-- 137 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~-------------------~--~~g~~~~d~~~~--e------~-- 137 (571)
..+.|+++|..++|||||+|+|+.........+. + ..+....+.... + .
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4689999999999999999999732110000000 0 001111111110 0 0
Q ss_pred --hhceeEeeceEEEee-cCeEEEEEcCCCCCCc-------------HHHHHHHH-HhcCeEEEEEeCCCCCchhHH-HH
Q 008294 138 --ERGITITSAATTTYW-NKHRINIIDTPGHVDF-------------TLEVERAL-RVLDGAICLFDSVAGVEPQSE-TV 199 (571)
Q Consensus 138 --~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~f-------------~~~~~~~l-~~~D~~ilVvda~~g~~~~~~-~~ 199 (571)
..|++-......+.. ....++|+||||...- ...+..++ ..+|++++|+|+..++..++. .+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 123333333333333 3457999999997651 12233334 467999999999998887776 67
Q ss_pred HHHHHhcCCCeEEEEecCCcccc
Q 008294 200 WRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 200 ~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
+..+...+.|+++|+||+|+...
T Consensus 210 l~~L~~~g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 210 AKEVDPQGQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHHHCTTCSSEEEEEECTTSSCT
T ss_pred HHHHHhcCCCEEEEEeCcccCCc
Confidence 88888889999999999998753
No 191
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.36 E-value=4.5e-12 Score=133.37 Aligned_cols=113 Identities=18% Similarity=0.245 Sum_probs=71.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCCCCCCc
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVDF 168 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTPG~~~f 168 (571)
...|+++|++|||||||+++|. +........ ...|.......+.+.+ ..++++||||+.+.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Ls---g~~~~i~~~---------------~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~ 218 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMT---RAHPKIAPY---------------PFTTLSPNLGVVEVSEEERFTLADIPGIIEG 218 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHC---SSCCEECCC---------------TTCSSCCEEEEEECSSSCEEEEEECCCCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHH---cCCccccCc---------------ccceecceeeEEEecCcceEEEEeccccccc
Confidence 4568999999999999999994 332221110 1123333333444554 78999999998642
Q ss_pred -------HHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh-----cCCCeEEEEecCCccc
Q 008294 169 -------TLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 -------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~-----~~~p~ivviNK~D~~~ 221 (571)
.....+.+..+|.+++|+|+. ........ .++++.. .+.|.++|+||+|+..
T Consensus 219 a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 219 ASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp GGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred hhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 233455567799999999997 11111111 1222222 3689999999999764
No 192
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.4e-11 Score=127.49 Aligned_cols=114 Identities=16% Similarity=0.253 Sum_probs=84.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
...+|+|||.||+|||||+|+|. +.....+. ..++|+......+.+.+.+++|+||||..+-
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt---~~~~~v~~---------------~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLT---GTESEAAE---------------YEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHH---SBCCCGGG---------------TCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHh---CCCCcccC---------------CCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 35689999999999999999996 32222211 2466888888888899999999999998652
Q ss_pred -------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh-----cCCCeEEEEecCCccc
Q 008294 169 -------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 -------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~-----~~~p~ivviNK~D~~~ 221 (571)
...+...++.+|++++|+|+.+.+.. ...+...+.. ...|.++++||+|+.+
T Consensus 133 a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 133 AKDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp -----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred chhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 34577788999999999999864322 2222233333 2568899999999754
No 193
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.34 E-value=7.3e-12 Score=129.40 Aligned_cols=63 Identities=21% Similarity=0.092 Sum_probs=39.6
Q ss_pred ecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
..++.+.|+||||..... ......+|++++|+|+..+...+... . .-...|.++|+||+|+..
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~--~il~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--R--GIIEMADLVAVTKSDGDL 226 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGG
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--H--HHHhcCCEEEEeeecCCC
Confidence 367889999999975432 23357899999999998764322111 1 123578999999999864
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.29 E-value=5.4e-12 Score=124.73 Aligned_cols=133 Identities=20% Similarity=0.156 Sum_probs=75.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc--CCcceeeeeecCcccc------------cchhhhhhhceeEeeceEE----
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT--GRNYKIGEVHEGTATM------------DWMEQEQERGITITSAATT---- 149 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~--g~~~~~g~~~~g~~~~------------d~~~~e~~~g~t~~~~~~~---- 149 (571)
.+...++++|..|+|||||+++|.... |........+.+.... +......+ +.........
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESYDR 90 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEecHHH
Confidence 346788999999999999999997443 2222222223332211 11111000 1000000000
Q ss_pred -----------E-e-ecCeEEEEEcCCCCCCcHHH------HHHHHHhcCeEEEEEeCCCCCchhHHHH-----HHHHHh
Q 008294 150 -----------T-Y-WNKHRINIIDTPGHVDFTLE------VERALRVLDGAICLFDSVAGVEPQSETV-----WRQADK 205 (571)
Q Consensus 150 -----------~-~-~~~~~i~liDTPG~~~f~~~------~~~~l~~~D~~ilVvda~~g~~~~~~~~-----~~~~~~ 205 (571)
+ . ..++.+.||||||+.++... +..++.. +++|+|+|+........... ......
T Consensus 91 ~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 169 (262)
T 1yrb_A 91 LMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR 169 (262)
T ss_dssp HHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc
Confidence 0 0 02368999999998775322 2234445 88999999976655544321 122334
Q ss_pred cCCCeEEEEecCCcccc
Q 008294 206 YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 206 ~~~p~ivviNK~D~~~~ 222 (571)
.++|.++|+||+|+...
T Consensus 170 ~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 170 LGATTIPALNKVDLLSE 186 (262)
T ss_dssp HTSCEEEEECCGGGCCH
T ss_pred cCCCeEEEEeccccccc
Confidence 58999999999998653
No 195
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.26 E-value=2e-11 Score=126.77 Aligned_cols=69 Identities=16% Similarity=0.223 Sum_probs=53.1
Q ss_pred CeEEEEEcCCCCCCc-------------HHHHHHHHHhcCeEEEEEeCCC-CC-chhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 154 KHRINIIDTPGHVDF-------------TLEVERALRVLDGAICLFDSVA-GV-EPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 154 ~~~i~liDTPG~~~f-------------~~~~~~~l~~~D~~ilVvda~~-g~-~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
...++||||||+.++ ...+..+++.+|++|+|+|+.. .. .......++.+...+.|+++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 567999999999886 5667788999999999998753 22 23334555556667899999999999
Q ss_pred cccc
Q 008294 219 RLGA 222 (571)
Q Consensus 219 ~~~~ 222 (571)
+...
T Consensus 215 l~~~ 218 (360)
T 3t34_A 215 LMDK 218 (360)
T ss_dssp GCCT
T ss_pred cCCC
Confidence 8753
No 196
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.23 E-value=5.8e-12 Score=135.35 Aligned_cols=217 Identities=17% Similarity=0.162 Sum_probs=119.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCc-ccccc-hhhhhhhceeEeeceE-------------E
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDW-MEQEQERGITITSAAT-------------T 149 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~-~~~d~-~~~e~~~g~t~~~~~~-------------~ 149 (571)
.+.++|+++|++|+||||++++|.+.. |........+... ...++ .......++.+..... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 457899999999999999999998543 3222222211111 11111 1112233444322110 1
Q ss_pred EeecCeEEEEEcCCCCCC----cHHHHHHHH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCcccc
Q 008294 150 TYWNKHRINIIDTPGHVD----FTLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGA 222 (571)
Q Consensus 150 ~~~~~~~i~liDTPG~~~----f~~~~~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~ 222 (571)
+.+.++.+.||||||... +..++.... ..+|.+++|+|+..+.. .......+... +|+ .+|+||+|...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~- 254 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHA- 254 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCC-
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCcccc-
Confidence 123678999999999874 233332222 26799999999998754 23333333332 785 89999999863
Q ss_pred chhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhc
Q 008294 223 NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL 302 (571)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~ 302 (571)
.....+ .+...+|.... +++.++ ++. |+.......|-+...|. .....|+|.+.+.
T Consensus 255 ~~g~~l-~~~~~~g~PI~--fig~ge--~~~---dl~~f~~~~~vsal~G~----------------Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 KGGGAL-SAVAATKSPII--FIGTGE--HID---DFEPFKTQPFISKLLGM----------------GDIEGLIDKVNEL 310 (504)
T ss_dssp CCTHHH-HHHHHHCCCEE--EEECSS--STT---CEECCTHHHHHHCCCTT----------------TTTTTTHHHHTTT
T ss_pred chHHHH-HHHHHhCCCeE--Eecccc--chh---hhhccCcceeeehhcCC----------------CcHHHHHHHHHHH
Confidence 222233 35566775321 233222 222 12111111111111110 0034567777655
Q ss_pred ----CHHHHHHHhcCCCCCHHHHHHHHHhhcccCc
Q 008294 303 ----DDEAMESYLEGNEPDEETIKKLIRKGTIAGS 333 (571)
Q Consensus 303 ----~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~ 333 (571)
+++++++|++| +++.+++...+++....+.
T Consensus 311 ~~~~~~~l~~k~~~g-~~~l~d~~~~l~~~~~~G~ 344 (504)
T 2j37_W 311 KLDDNEALIEKLKHG-QFTLRDMYEQFQNIMKMGP 344 (504)
T ss_dssp TTCCCTTTTTSCTTS-GGGGCCCHHHHHHCCCCCC
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 67899999998 7888888888888766554
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.08 E-value=5.9e-10 Score=114.76 Aligned_cols=82 Identities=15% Similarity=0.079 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-----------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------------- 153 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~----------------- 153 (571)
.+|+++|.+|+|||||+|+|.... ..... .+ +.|+......+.+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~---~~v~~-~p--------------~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~ 64 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG---IEAAN-YP--------------FCTIEPNTGVVPMPDPRLDALAEIVKPERIL 64 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC----------C--------------CCCCCCCSSEEECCCHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CcccC-CC--------------CceECceEEEEecCCcccceeeeeeccccee
Confidence 479999999999999999997322 11111 11 12222222222222
Q ss_pred CeEEEEEcCCCCCCcHH-------HHHHHHHhcCeEEEEEeCCC
Q 008294 154 KHRINIIDTPGHVDFTL-------EVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~-------~~~~~l~~~D~~ilVvda~~ 190 (571)
+..++||||||+.++.. .....++.+|++++|+|+.+
T Consensus 65 ~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 35799999999988643 24567899999999999986
No 198
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.07 E-value=5e-10 Score=113.20 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=63.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee--cCeEEEEEcCCCC--
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGH-- 165 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~--~~~~i~liDTPG~-- 165 (571)
..+|+++|+.|+|||||+++|+.. +.....|....|... ..++........+.. ....+++|||||+
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~-~~~~~~gi~~~g~~~--------~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLT-DLYPERVISGAAEKI--------ERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC---------------------------------CEEEEC---CCEEEEEEEEC----
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC-CccCCCCcccCCccc--------CCcceEeeEEEEecCCCcccCcchhhhhhhhh
Confidence 468899999999999999998611 011111100000000 001111111111111 2357899999998
Q ss_pred -----CCcHHHHH-------HHHHhc-------------CeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 166 -----VDFTLEVE-------RALRVL-------------DGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 166 -----~~f~~~~~-------~~l~~~-------------D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
..|..... ..++.+ +.++++++.+ +++.....+.++.+. .++++++|+||.|+
T Consensus 89 ~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 89 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADT 167 (301)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGG
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCC
Confidence 33322222 344433 2366666654 468887766665554 36899999999998
Q ss_pred cc
Q 008294 220 LG 221 (571)
Q Consensus 220 ~~ 221 (571)
..
T Consensus 168 ~~ 169 (301)
T 2qnr_A 168 LT 169 (301)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 199
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.05 E-value=4.7e-10 Score=115.21 Aligned_cols=123 Identities=18% Similarity=0.143 Sum_probs=66.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHh----cCCcceeeeeecCccc-----------ccchhhhhhhceeEeece-----
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFY----TGRNYKIGEVHEGTAT-----------MDWMEQEQERGITITSAA----- 147 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~----~g~~~~~g~~~~g~~~-----------~d~~~~e~~~g~t~~~~~----- 147 (571)
.+...++|+|++|+|||||+++|... .|.+.-.+ .+..+.. +.+.. +....-+....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~-~d~~~~~~~~~~~~~~~~i~~v~--q~~~~~~~~~~~~~~l 129 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA-VDPSSTRTGGSILGDKTRMARLA--IDRNAFIRPSPSSGTL 129 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE-ECGGGGSSCCCSSCCGGGSTTGG--GCTTEEEECCCCCSSH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE-EcCcccccccchHHHhhhheeec--cCcccccccCcccccc
Confidence 45678999999999999999999732 23222211 1111110 00000 00111110000
Q ss_pred -----------EEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEec
Q 008294 148 -----------TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNK 216 (571)
Q Consensus 148 -----------~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK 216 (571)
..+...+..+.||||||..+-.. .....+|.+++|+|+..+...+. ....+ ..++.++++||
T Consensus 130 ~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK 202 (337)
T 2qm8_A 130 GGVAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNK 202 (337)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEEC
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEc
Confidence 00223678999999999876322 23468899999999865422110 00000 13477889999
Q ss_pred CCcc
Q 008294 217 MDRL 220 (571)
Q Consensus 217 ~D~~ 220 (571)
+|+.
T Consensus 203 ~Dl~ 206 (337)
T 2qm8_A 203 ADDG 206 (337)
T ss_dssp CSTT
T ss_pred hhcc
Confidence 9964
No 200
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.00 E-value=1.9e-09 Score=113.37 Aligned_cols=118 Identities=17% Similarity=0.202 Sum_probs=64.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcc-eeeeeecCcccccchhhhhhhceeEeeceEEEee----cCeEEEEEcCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNY-KIGEVHEGTATMDWMEQEQERGITITSAATTTYW----NKHRINIIDTPG 164 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~-~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~----~~~~i~liDTPG 164 (571)
..+|+++|++|+|||||+++|+ |... ..+. +....+. .. |+......+.. ....+++|||||
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~---g~~~~~~~~---~~~~~~~-----~~--t~~~~~i~~v~q~~~~~~~Ltv~Dt~g 97 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLF---LTDLYSPEY---PGPSHRI-----KK--TVQVEQSKVLIKEGGVQLLLTIVDTPG 97 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHT---TCCCCCCCC---CSCC------------CCEEEEEECC------CEEEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHh---CCCCCCCCC---CCcccCC-----cc--ceeeeeEEEEEecCCcccceeeeechh
Confidence 3578999999999999999996 3221 1110 0000000 00 11111111111 124789999999
Q ss_pred CCCcHH------HH--------HHHH-----------Hh--cCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEec
Q 008294 165 HVDFTL------EV--------ERAL-----------RV--LDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNK 216 (571)
Q Consensus 165 ~~~f~~------~~--------~~~l-----------~~--~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK 216 (571)
+.++.. .+ ..++ +. +++++++++++ +++...+...+..+.. ++|+|+|+||
T Consensus 98 ~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK 176 (418)
T 2qag_C 98 FGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAK 176 (418)
T ss_dssp ----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEES
T ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEc
Confidence 977521 11 1111 11 34566666665 6888888777777654 8999999999
Q ss_pred CCccc
Q 008294 217 MDRLG 221 (571)
Q Consensus 217 ~D~~~ 221 (571)
+|+..
T Consensus 177 ~Dll~ 181 (418)
T 2qag_C 177 ADTLT 181 (418)
T ss_dssp TTSSC
T ss_pred ccCcc
Confidence 99864
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.00 E-value=7.6e-09 Score=107.06 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-------------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY------------------- 151 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~------------------- 151 (571)
.+|+++|.+|+|||||+|+|...... ... .+++ |+........
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~---v~~-~p~~--------------Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~ 63 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANAL---AAN-YPFA--------------TIDKNVGVVPLEDERLYALQRTFAKGERV 63 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTT---CSS-CCGG--------------GGSTTEEEEECCCHHHHHHHHHHCBTTBC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCc---ccC-CCCc--------------eeccceeeEecChHHHHHHHHHhcccccc
Confidence 46899999999999999999743210 000 0011 1111111111
Q ss_pred --ecCeEEEEEcCCCCCCc-------HHHHHHHHHhcCeEEEEEeCCC
Q 008294 152 --WNKHRINIIDTPGHVDF-------TLEVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 152 --~~~~~i~liDTPG~~~f-------~~~~~~~l~~~D~~ilVvda~~ 190 (571)
+.+..++||||||+.++ .......++.+|++++|+|+.+
T Consensus 64 ~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 13467999999999774 3456778999999999999985
No 202
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.00 E-value=1.4e-09 Score=104.71 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=65.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeee--ecCcccccchhhhhhhce---eEeeceE-EE------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQEQERGI---TITSAAT-TT------------ 150 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~--~~g~~~~d~~~~e~~~g~---t~~~~~~-~~------------ 150 (571)
+.++|+++|++|+|||||+++|+...........+ +.+. ..|....+. .|. .+..... .+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~-~~d~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIA-KFDAERMEK-HGAKVVPLNTGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTT-HHHHHHHHT-TTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCC-CccHHHHHh-cCCcEEEecCCceEeccHHHHHHHHHHH
Confidence 57899999999999999999999654332222222 1221 111111111 111 1110000 00
Q ss_pred eecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 151 YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 151 ~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
...+..+.++||+|....... .-...+..+.|+|+..+...... .....+.|.++|+||+|+..
T Consensus 115 ~~~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~ 178 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLAD 178 (226)
T ss_dssp CGGGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGHH
T ss_pred hcCCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccCc
Confidence 012347999999995321100 01234667888887543322111 11224689999999999754
No 203
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.99 E-value=5.7e-09 Score=110.40 Aligned_cols=217 Identities=12% Similarity=0.115 Sum_probs=117.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc----CCcceeeeeecCcc-cccch-hhhhhhceeEeeceE-------------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTA-TMDWM-EQEQERGITITSAAT------------- 148 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~----g~~~~~g~~~~g~~-~~d~~-~~e~~~g~t~~~~~~------------- 148 (571)
.+.++|+++|+.|+||||++..|.+.. |........+.... ..+.. ......|+.+.....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 346899999999999999999997443 32222222222111 00100 012223443322110
Q ss_pred EEeecCeEEEEEcCCCCCCcHHHHHHH------HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccc
Q 008294 149 TTYWNKHRINIIDTPGHVDFTLEVERA------LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLG 221 (571)
Q Consensus 149 ~~~~~~~~i~liDTPG~~~f~~~~~~~------l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~ 221 (571)
.+.+.++.+.||||||...+....... +...|.+++|+|+..|.. ......... .++++ -+|+||+|...
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f~-~~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAFN-EALPLTGVVLTKVDGDA 254 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHHH-HHSCCCCEEEECTTSSS
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHHh-ccCCCeEEEEecCCCCc
Confidence 111257899999999987654444433 335689999999987632 222222222 13553 47999999743
Q ss_pred cchhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHH--HHHHHHHH
Q 008294 222 ANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEY--RSQMIETI 299 (571)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~l~e~~ 299 (571)
.. ..+..+...++..... ++.+.....+ ..|+ |..+.+..... ...|+|.+
T Consensus 255 -~~-g~~l~i~~~~~~Pi~~----iG~ge~v~dl--------~~f~-------------p~~~a~~l~g~gD~~~Lie~a 307 (433)
T 2xxa_A 255 -RG-GAALSIRHITGKPIKF----LGVGEKTEAL--------EPFH-------------PDRIASRILGMGDVLSLIEDI 307 (433)
T ss_dssp -CC-THHHHHHHHHCCCEEE----EECSSSSSCE--------EECC-------------HHHHHHHHHCCCTTHHHHHHH
T ss_pred -cH-HHHHHHHHHHCCCeEE----EecCCCchhh--------hhcC-------------hHHHHHHHhCccchHHHHHHH
Confidence 22 2344666666653321 1222221111 1111 12222221111 22333333
Q ss_pred h-----hcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcc
Q 008294 300 V-----ELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSF 334 (571)
Q Consensus 300 ~-----~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~ 334 (571)
. +.+++++++|++|.+++.+++.+.+++....+.+
T Consensus 308 ~~~~~~~~~~~l~~k~~~~~~f~~~d~~~ql~~~~~~g~~ 347 (433)
T 2xxa_A 308 ESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGM 347 (433)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHSCSSC
T ss_pred HHhhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 2 3468899999998899999999999987766554
No 204
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.87 E-value=4.1e-08 Score=103.36 Aligned_cols=215 Identities=16% Similarity=0.133 Sum_probs=102.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh---cCCcceeeeeecCcc-cccc-hhhhhhhceeEeece-------------EEE
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTA-TMDW-MEQEQERGITITSAA-------------TTT 150 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~g~~-~~d~-~~~e~~~g~t~~~~~-------------~~~ 150 (571)
+...|+++|+.|+||||++..|... .|........+.... ..+. .......|+.+.... ..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 4678999999999999999999633 222211111111100 0000 000111233221110 001
Q ss_pred eecCeEEEEEcCCCCCC------cHHHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 151 YWNKHRINIIDTPGHVD------FTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 151 ~~~~~~i~liDTPG~~~------f~~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.+.++.+.||||||... +..++....+ ..|.+++|+|+..|.. ...........--+..+|+||+|...
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASPIGSVIITKMDGTA- 252 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCSSEEEEEECGGGCS-
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccCCcEEEEecccccc-
Confidence 12478899999999644 3334333222 3489999999987633 22333444434356789999999752
Q ss_pred chhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeec-ccHHHHH------HHHHHHHHH
Q 008294 223 NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYED-IPANLQK------MAQEYRSQM 295 (571)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~------~~~~~~~~l 295 (571)
.... .-++....+..... ++.+.+.. .+.. .|+.+.+ ....+++.+
T Consensus 253 ~~G~-als~~~~~g~Pi~f----ig~Ge~v~----------------------dL~~f~p~~~~~~llg~gd~~~l~e~~ 305 (433)
T 3kl4_A 253 KGGG-ALSAVVATGATIKF----IGTGEKID----------------------ELETFNAKRFVSRILGMGDIESILEKV 305 (433)
T ss_dssp CHHH-HHHHHHHHTCEEEE----EECCSSSS----------------------CEEECCHHHHHHHHHCSSHHHHHHHHH
T ss_pred cchH-HHHHHHHHCCCEEE----EECCCChH----------------------hCccCCHHHHHHHhcCCchHHHHHHHH
Confidence 2222 33333344542211 11122211 1112 2334444 234445555
Q ss_pred HHHHhhcC-HHHHHHHhcCC-CCCHHHHHHHHHhhcccCc
Q 008294 296 IETIVELD-DEAMESYLEGN-EPDEETIKKLIRKGTIAGS 333 (571)
Q Consensus 296 ~e~~~~~~-~~l~e~~l~~~-~~~~~~l~~~l~~~~~~~~ 333 (571)
.|.+-+.+ ++++++|.+|+ +++-+++.+.+++....|.
T Consensus 306 ~~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg~ 345 (433)
T 3kl4_A 306 KGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGP 345 (433)
T ss_dssp HHC-------------------CCHHHHHHHHHHHHHCCS
T ss_pred HHhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccC
Confidence 55554444 67999999997 8999999998887665554
No 205
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.84 E-value=1.5e-08 Score=106.27 Aligned_cols=138 Identities=16% Similarity=0.182 Sum_probs=80.5
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 163 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTP 163 (571)
....+++++|+|+.|+|||||+|.|+ |... .|..... ...+.+.......+...+ ..++++|+|
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~---G~~l------~g~~~~~-----~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~ 103 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLF---NTKF------EGEPATH-----TQPGVQLQSNTYDLQESNVRLKLTIVSTV 103 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHH---TSCC------------------CCSSCEEEEEEEEEEC--CEEEEEEEEEE
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHh---Cccc------cCCcCCC-----CCccceEeeEEEEeecCccccccchhhhh
Confidence 34456789999999999999999996 3211 0100000 011222221111111112 268999999
Q ss_pred CCCCcH--------------HHHHHHHHh-------------c--C-eEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEE
Q 008294 164 GHVDFT--------------LEVERALRV-------------L--D-GAICLFDSVAGVEPQSETVWRQADKYGVPRICF 213 (571)
Q Consensus 164 G~~~f~--------------~~~~~~l~~-------------~--D-~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivv 213 (571)
|+.+.. ..+..++.. + | ++++++|+.+++...+.++++.+. .++|+|+|
T Consensus 104 ~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~V 182 (427)
T 2qag_B 104 GFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPI 182 (427)
T ss_dssp CCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEE
T ss_pred hhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEE
Confidence 987531 111122211 1 2 467788999999999988888776 78999999
Q ss_pred EecCCcccc-chhhhHHHHHHHhCCc
Q 008294 214 VNKMDRLGA-NFFRTRDMIVTNLGAK 238 (571)
Q Consensus 214 iNK~D~~~~-~~~~~~~~i~~~l~~~ 238 (571)
+||+|.... +.....+.|++.+...
T Consensus 183 i~KtD~Lt~~E~~~l~~~I~~~L~~~ 208 (427)
T 2qag_B 183 IAKADAISKSELTKFKIKITSELVSN 208 (427)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHHBTT
T ss_pred EcchhccchHHHHHHHHHHHHHHHHc
Confidence 999998764 3556666777655443
No 206
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.77 E-value=1.1e-09 Score=113.80 Aligned_cols=130 Identities=11% Similarity=0.148 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC-Cc-ceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG-RN-YKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g-~~-~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
++|+++|.+|+|||||+|+|+.... .. ....+. .+|+|.......+ +..+.++||||..+.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~--------------~~gtT~~~~~~~~---~~~~~liDtPG~~~~ 225 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSY--------------FPGTTLDMIEIPL---ESGATLYDTPGIINH 225 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEE--------------CTTSSCEEEEEEC---STTCEEEECCSCCCC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecC--------------CCCeEEeeEEEEe---CCCeEEEeCCCcCcH
Confidence 5899999999999999999984410 00 000111 1355555443332 224899999997643
Q ss_pred H-------HHHHHHH---HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc-chhhhHHHHHHHhCC
Q 008294 169 T-------LEVERAL---RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTRDMIVTNLGA 237 (571)
Q Consensus 169 ~-------~~~~~~l---~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~-~~~~~~~~i~~~l~~ 237 (571)
. .+....+ ...|.+++++|+...........+..+...++|+++++||+|.... +.....+.+++.+|.
T Consensus 226 ~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~ 305 (369)
T 3ec1_A 226 HQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGE 305 (369)
T ss_dssp SSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT
T ss_pred HHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCC
Confidence 1 2233334 6679999999995321111111133344567899999999998753 466777788888886
No 207
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.77 E-value=1.3e-08 Score=96.56 Aligned_cols=85 Identities=13% Similarity=0.284 Sum_probs=71.9
Q ss_pred CCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC-
Q 008294 386 DDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 462 (571)
Q Consensus 386 ~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~- 462 (571)
.++||.+.|..++. +.|++..|||.+|++++||.|...+.+...+|++|+..+ +++++|.|||++++ .|++
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~----~~~~~A~aGd~V~l~L~gi~~ 76 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDD----VETDTVAPGENLKIRLKGIEE 76 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSS----SCBSEECTTSEEEEEEEESSS
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECC----EEeEEECCCCEEEEEEcCCCH
Confidence 36899999999886 579999999999999999999999988888999887554 78999999999999 7775
Q ss_pred -CccccceecCCCCc
Q 008294 463 -DTITGETLCDADHP 476 (571)
Q Consensus 463 -~~~~Gdtl~~~~~~ 476 (571)
++..||+||+++.+
T Consensus 77 ~di~rG~vl~~~~~~ 91 (204)
T 3e1y_E 77 EEILPGFILCDPNNL 91 (204)
T ss_dssp SCCCTTCEEBCSSSC
T ss_pred HHCccceEEECCCCC
Confidence 58899999998765
No 208
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.75 E-value=1.7e-09 Score=112.29 Aligned_cols=132 Identities=9% Similarity=0.119 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCc-ceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc-
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF- 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~-~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f- 168 (571)
++|+++|.+|+|||||+|+|+...... ..... ....+|+|.......+. ..+.++||||..+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~------------~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVIT------------TSHFPGTTLDLIDIPLD---EESSLYDTPGIINHH 225 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCE------------EECCC----CEEEEESS---SSCEEEECCCBCCTT
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccccccee------------cCCCCCeecceEEEEec---CCeEEEeCCCcCcHH
Confidence 579999999999999999998542111 00000 01123556554443332 23899999998653
Q ss_pred ------HHHHHHH---HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc-chhhhHHHHHHHhCC
Q 008294 169 ------TLEVERA---LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTRDMIVTNLGA 237 (571)
Q Consensus 169 ------~~~~~~~---l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~-~~~~~~~~i~~~l~~ 237 (571)
..+.... ....+.+++++|+...........+..+...++|+++|+||+|.... +.....+.+++.+|.
T Consensus 226 ~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~ 304 (368)
T 3h2y_A 226 QMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD 304 (368)
T ss_dssp SGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTT
T ss_pred HHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhCC
Confidence 1222222 24568899999985321111111123344567899999999998764 466677778888886
No 209
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.67 E-value=6.1e-08 Score=96.22 Aligned_cols=136 Identities=16% Similarity=0.171 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeec-CcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHE-GTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~-g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
.+++++|+.|+|||||+|.|+..... ..|.+.. |... ......+++....... .-...++++|+||+.+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~--~~G~i~~~g~~i---~~~~~~~~i~~v~q~~---~~~~~ltv~d~~~~g~~~ 74 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS--RKASSWNREEKI---PKTVEIKAIGHVIEEG---GVKMKLTVIDTPGFGDQI 74 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC--------------C---CCCCSCCEEEESCC-------CCEEEEECCCC--CCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC--CCCccccCCccc---CcceeeeeeEEEeecC---CCcCCceEEechhhhhhc
Confidence 58999999999999999999733211 1122110 1000 0000011111111100 012368999999975420
Q ss_pred ---------HH-----HHHHH--------------HhcCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 170 ---------LE-----VERAL--------------RVLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 170 ---------~~-----~~~~l--------------~~~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
.. ....+ ..++++++++|.. +|+.+.+.+.++.+... +++++|+||+|..
T Consensus 75 ~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 75 NNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp BCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGS
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccC
Confidence 01 11111 1247888999854 89999999999888877 9999999999987
Q ss_pred ccc-hhhhHHHHHHHh
Q 008294 221 GAN-FFRTRDMIVTNL 235 (571)
Q Consensus 221 ~~~-~~~~~~~i~~~l 235 (571)
..+ .....+.+++.+
T Consensus 154 t~~e~~~~k~~i~~~l 169 (270)
T 3sop_A 154 TLEEKSEFKQRVRKEL 169 (270)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 643 444555555544
No 210
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.66 E-value=3.5e-07 Score=95.87 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=68.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcc-eeeeeecCcccccchhhhhhhceeEeeceEEEeec-CeEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNY-KIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~-~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~liDTPG~~~ 167 (571)
...++++|+.|+|||||+|.|+ |... ..|++..+. .+.. ..+. .+... ...++++|+||+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~---Gl~~p~~GsI~~~g-----~~~t-~~~~-------v~q~~~~~~ltv~D~~g~~~ 132 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLR---GIGNEEEGAAKTGV-----VEVT-MERH-------PYKHPNIPNVVFWDLPGIGS 132 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH---TCCTTSTTSCCCCC----------CCCE-------EEECSSCTTEEEEECCCGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHh---CCCCccCceEEECC-----eecc-eeEE-------eccccccCCeeehHhhcccc
Confidence 4589999999999999999997 3221 122221111 0000 0111 11111 13689999999742
Q ss_pred c---HHHHHHH--HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 168 F---TLEVERA--LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 168 f---~~~~~~~--l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
- ..+.... +...|..++ +++.. .+.+...+.+.+...+.|+++|+||.|+.
T Consensus 133 ~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 133 TNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp SSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred hHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 1 2222222 233355554 77755 46777778888888899999999999974
No 211
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.62 E-value=2e-08 Score=103.40 Aligned_cols=81 Identities=14% Similarity=0.056 Sum_probs=61.1
Q ss_pred eeEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCc-----------hhHHHHHHHHHh----
Q 008294 141 ITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-----------PQSETVWRQADK---- 205 (571)
Q Consensus 141 ~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~-----------~~~~~~~~~~~~---- 205 (571)
.|+......+..++..+.+|||+|+..|...+..+++.++++|+|+|.++-.+ ......+..+..
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 34444555667788999999999999999999999999999999999986311 122233333333
Q ss_pred cCCCeEEEEecCCccc
Q 008294 206 YGVPRICFVNKMDRLG 221 (571)
Q Consensus 206 ~~~p~ivviNK~D~~~ 221 (571)
.++|+++|+||+|+..
T Consensus 259 ~~~piiLv~NK~DL~~ 274 (353)
T 1cip_A 259 TDTSIILFLNKKDLFE 274 (353)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred cCCcEEEEEECcCchh
Confidence 4789999999999853
No 212
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.62 E-value=5.2e-08 Score=103.02 Aligned_cols=145 Identities=19% Similarity=0.148 Sum_probs=77.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCc-ccccchhh-hhhhceeEeece--------E----EEe
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDWMEQ-EQERGITITSAA--------T----TTY 151 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~-~~~d~~~~-e~~~g~t~~~~~--------~----~~~ 151 (571)
..++|+++|.+|+||||+++.|.... |........+... ...+.... ....|+.+.... . --.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 35689999999999999999997432 1111111111110 00011000 011122111110 0 000
Q ss_pred ecCeEEEEEcCCCCCCcHHHHHHHH------HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC-C-eEEEEecCCccccc
Q 008294 152 WNKHRINIIDTPGHVDFTLEVERAL------RVLDGAICLFDSVAGVEPQSETVWRQADKYGV-P-RICFVNKMDRLGAN 223 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~~~~~~~l------~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~-p-~ivviNK~D~~~~~ 223 (571)
+.++.+.||||||...........+ ..+|.+++|+|+..|.. .....+... ..+ | ..+|+||+|... .
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~~~~~~~~-~~~~~i~gvVlnK~D~~~-~ 253 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AGIQAKAFK-EAVGEIGSIIVTKLDGSA-K 253 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HHHHHHHHH-TTSCSCEEEEEECSSSCS-T
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HHHHHHHHh-hcccCCeEEEEeCCCCcc-c
Confidence 2568899999999876533333322 24699999999987642 222222222 236 6 788999999753 2
Q ss_pred hhhhHHHHHHHhCCc
Q 008294 224 FFRTRDMIVTNLGAK 238 (571)
Q Consensus 224 ~~~~~~~i~~~l~~~ 238 (571)
....+ .+...++..
T Consensus 254 ~g~~l-~~~~~~~~p 267 (432)
T 2v3c_C 254 GGGAL-SAVAETKAP 267 (432)
T ss_dssp THHHH-HHHHHSSCC
T ss_pred hHHHH-HHHHHHCCC
Confidence 22233 366666653
No 213
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.61 E-value=4.8e-08 Score=101.52 Aligned_cols=84 Identities=18% Similarity=0.134 Sum_probs=49.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec---------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--------------- 153 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--------------- 153 (571)
...+|+++|.+|+|||||+|+|. +...... ...++|+......+.+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Lt---g~~~~~~---------------~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~ 82 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLT---NSQASAE---------------NFPFCTIDPNESRVPVPDERFDFLCQYHKPAS 82 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHH---C----------------------------CCSEEEEECCCHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHH---CCCcccc---------------CCCccccCceeEEEEECCccceeeccccCccc
Confidence 34679999999999999999996 2211111 01223333333333322
Q ss_pred --CeEEEEEcCCCCCCcHH-------HHHHHHHhcCeEEEEEeCCC
Q 008294 154 --KHRINIIDTPGHVDFTL-------EVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 154 --~~~i~liDTPG~~~f~~-------~~~~~l~~~D~~ilVvda~~ 190 (571)
...+++|||||+..+.. .....++.+|++++|+|+.+
T Consensus 83 ~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 83 KIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 34699999999987654 56778999999999999974
No 214
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.59 E-value=3.2e-06 Score=89.02 Aligned_cols=145 Identities=15% Similarity=0.028 Sum_probs=76.5
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCcc--cccchhhhhhhceeEeeceE-------------EE
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA--TMDWMEQEQERGITITSAAT-------------TT 150 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~~--~~d~~~~e~~~g~t~~~~~~-------------~~ 150 (571)
+...|+++|.+|+||||++..|.... |........+.... +..........|+.+..... .+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999997432 22111111111100 00000011122332221100 00
Q ss_pred eecCeEEEEEcCCCCCCcHHHHH------HHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccch
Q 008294 151 YWNKHRINIIDTPGHVDFTLEVE------RALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANF 224 (571)
Q Consensus 151 ~~~~~~i~liDTPG~~~f~~~~~------~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~ 224 (571)
...++.+.||||||......... .....+|.+++|+|+..|.. ...........--+..+|+||+|....
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~f~~~~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALAFKEATPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHSCTTEEEEEECCSSCSS--
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHHHHhhCCCeEEEEECCCCccc--
Confidence 11458999999999655332222 22334699999999987532 233334444343455689999997532
Q ss_pred hhhHHHHHHHhCC
Q 008294 225 FRTRDMIVTNLGA 237 (571)
Q Consensus 225 ~~~~~~i~~~l~~ 237 (571)
......+....+.
T Consensus 255 gG~~ls~~~~~g~ 267 (443)
T 3dm5_A 255 GGGALSAVAATGA 267 (443)
T ss_dssp HHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHCC
Confidence 1223344444554
No 215
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.54 E-value=4.6e-08 Score=101.05 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=53.2
Q ss_pred eEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC---------c--hhHHHHHHHHHh----c
Q 008294 142 TITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV---------E--PQSETVWRQADK----Y 206 (571)
Q Consensus 142 t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~---------~--~~~~~~~~~~~~----~ 206 (571)
|+......+..++..+.+|||+|+..|...+..+++.++++|+|+|.++-- . ......|..+.. .
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 444444556678899999999999999999999999999999999998721 1 112233444332 3
Q ss_pred CCCeEEEEecCCccc
Q 008294 207 GVPRICFVNKMDRLG 221 (571)
Q Consensus 207 ~~p~ivviNK~D~~~ 221 (571)
++|+++|+||+|+..
T Consensus 268 ~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 268 NVSIILFLNKTDLLE 282 (362)
T ss_dssp TSEEEEEEECHHHHH
T ss_pred CCCEEEEEEChhhhh
Confidence 789999999999853
No 216
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.40 E-value=2.6e-07 Score=93.19 Aligned_cols=64 Identities=16% Similarity=0.039 Sum_probs=50.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-chhHHHH-HHHHHhcCCCeEEEEecCCccc
Q 008294 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETV-WRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 156 ~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~-~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.+++||| +.+|......+++.+|++|+|+|+++.. ....... +..+...++|+++|+||+|+..
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD 129 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCC
Confidence 7899999 8888777778899999999999998754 3333333 3445567899999999999864
No 217
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.34 E-value=2.9e-07 Score=93.49 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=61.7
Q ss_pred hceeEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCC-------CCCch----hHHHHHHHHHh--
Q 008294 139 RGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV-------AGVEP----QSETVWRQADK-- 205 (571)
Q Consensus 139 ~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~-------~g~~~----~~~~~~~~~~~-- 205 (571)
+..|+......+..++..+.+|||+|+..|...+..+++.++++|+|+|.+ +.-.. .....|..+..
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 344555556667778999999999999999999999999999999999765 21111 12233443332
Q ss_pred --cCCCeEEEEecCCcccc
Q 008294 206 --YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 206 --~~~p~ivviNK~D~~~~ 222 (571)
.++|+++|+||+|+...
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ 249 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEE 249 (327)
T ss_dssp GGTTCEEEEEEECHHHHHH
T ss_pred ccCCceEEEEEECchhhhh
Confidence 47899999999998643
No 218
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.34 E-value=2.9e-07 Score=93.78 Aligned_cols=83 Identities=19% Similarity=0.172 Sum_probs=62.5
Q ss_pred hceeEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCC---------CCch--hHHHHHHHHHh--
Q 008294 139 RGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA---------GVEP--QSETVWRQADK-- 205 (571)
Q Consensus 139 ~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~---------g~~~--~~~~~~~~~~~-- 205 (571)
+..|+......+..++..+.+|||+|+..|...+..+++.++++|+|+|.++ .... .....|..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 3445556666777789999999999999999999999999999999999972 1111 12233433332
Q ss_pred --cCCCeEEEEecCCccc
Q 008294 206 --YGVPRICFVNKMDRLG 221 (571)
Q Consensus 206 --~~~p~ivviNK~D~~~ 221 (571)
.++|+++|+||+|+..
T Consensus 225 ~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GGTTSEEEEEEECHHHHH
T ss_pred ccCCCeEEEEEECchhhh
Confidence 4789999999999864
No 219
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.32 E-value=2e-06 Score=80.69 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=37.3
Q ss_pred EEEEEcCC------CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH----HHHHh----cCCCeEEEEecC-Ccc
Q 008294 156 RINIIDTP------GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW----RQADK----YGVPRICFVNKM-DRL 220 (571)
Q Consensus 156 ~i~liDTP------G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~----~~~~~----~~~p~ivviNK~-D~~ 220 (571)
++..-.+| |+..+...+..++..+|++|+|||+++......++-+ ..+.. .++|++|+.||. |++
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 45555666 6777778899999999999999999865322233222 22221 478999999996 665
Q ss_pred cc
Q 008294 221 GA 222 (571)
Q Consensus 221 ~~ 222 (571)
++
T Consensus 177 ~A 178 (227)
T 3l82_B 177 KR 178 (227)
T ss_dssp CB
T ss_pred CC
Confidence 44
No 220
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.31 E-value=9e-07 Score=92.25 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=59.4
Q ss_pred eEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCC----------CCch-hHHHHHHHHHh----c
Q 008294 142 TITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA----------GVEP-QSETVWRQADK----Y 206 (571)
Q Consensus 142 t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~----------g~~~-~~~~~~~~~~~----~ 206 (571)
|+......+..++..+.+|||+|+..|...+..+++.++++|+|+|.++ .-.. .....+..+.. .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4444445566788999999999999999999999999999999999986 1111 12223333332 3
Q ss_pred CCCeEEEEecCCccc
Q 008294 207 GVPRICFVNKMDRLG 221 (571)
Q Consensus 207 ~~p~ivviNK~D~~~ 221 (571)
++|+++|+||+|+..
T Consensus 284 ~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 284 TISVILFLNKQDLLA 298 (402)
T ss_dssp SCCEEEEEECHHHHH
T ss_pred CCeEEEEEEChhhhh
Confidence 689999999999853
No 221
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.30 E-value=1.5e-06 Score=90.38 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=57.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-------------- 154 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-------------- 154 (571)
+...++++|++|+|||||+|+|...... ..+. ..++|+......+.+.+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a--~~~~---------------~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~ 81 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLG--NPAN---------------YPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTT--STTC---------------CSSCCCCTTEEEEEECCHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcc--cccC---------------CCceeecceeeeeeeCCcchhhhhhhccccc
Confidence 3468999999999999999999732110 1100 12234443333333332
Q ss_pred ---eEEEEEcCCCCCC-------cHHHHHHHHHhcCeEEEEEeCCC
Q 008294 155 ---HRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 155 ---~~i~liDTPG~~~-------f~~~~~~~l~~~D~~ilVvda~~ 190 (571)
..+.+|||||... +.......++.+|.+++|+|+.+
T Consensus 82 ~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 82 RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999654 34567788899999999999975
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.22 E-value=2.5e-06 Score=85.62 Aligned_cols=143 Identities=17% Similarity=0.154 Sum_probs=78.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCcc-ccc-chhhhhhhceeEeece-------------EEEe
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA-TMD-WMEQEQERGITITSAA-------------TTTY 151 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~~-~~d-~~~~e~~~g~t~~~~~-------------~~~~ 151 (571)
...|+++|..|+||||++..|.... |........+.... ..+ ........|+.+.... ..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999997332 22211111111110 000 0000112233322110 0011
Q ss_pred ecCeEEEEEcCCCCCC--cHHHHH------HHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCcccc
Q 008294 152 WNKHRINIIDTPGHVD--FTLEVE------RALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGA 222 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~--f~~~~~------~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~ 222 (571)
+.++.+.||||||... ...... .....+|.+++|+|+..+ .......+.+.. .++ ..+|+||+|...
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~- 253 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA- 253 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT-
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc-
Confidence 2578899999999877 433222 345578999999999764 233333333333 477 668999999743
Q ss_pred chhhhHHHHHHHhCC
Q 008294 223 NFFRTRDMIVTNLGA 237 (571)
Q Consensus 223 ~~~~~~~~i~~~l~~ 237 (571)
.. ..+..+...++.
T Consensus 254 ~~-g~~~~~~~~~~~ 267 (297)
T 1j8m_F 254 KG-GGALSAVAATGA 267 (297)
T ss_dssp TH-HHHHHHHHTTTC
T ss_pred ch-HHHHHHHHHHCc
Confidence 22 223345555554
No 223
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.21 E-value=1.3e-05 Score=75.38 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=83.9
Q ss_pred eEEEEE-cCCCCchHHHHHHHHHh---cCCcceeeeeecCcccccchhhhhhhceeEeeceE-EE------eecCeEEEE
Q 008294 91 RNIGIM-AHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT-TT------YWNKHRINI 159 (571)
Q Consensus 91 ~~I~iv-G~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~-~~------~~~~~~i~l 159 (571)
+.|+|+ +..|+||||+.-.|... .|...-.-..++.....++... ...+..+-.... .+ ....+.+.|
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~~yD~vi 80 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKA-GKAAFDVFTAASEKDVYGIRKDLADYDFAI 80 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTT-SCCSSEEEECCSHHHHHTHHHHTTTSSEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhc-CCCCCcEEecCcHHHHHHHHHhcCCCCEEE
Confidence 467777 67889999999988632 3322222222222222222111 011111100000 00 014588999
Q ss_pred EcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc-----CCCeEEEEecCCccccchhhhHHHHHHH
Q 008294 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-----GVPRICFVNKMDRLGANFFRTRDMIVTN 234 (571)
Q Consensus 160 iDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~~~~~~~~~~i~~~ 234 (571)
||||+.. ......++..+|.+|+++.....- ......++.+... ++++.+|+|++|.......++.+.++ .
T Consensus 81 iD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~~~l~-~ 156 (206)
T 4dzz_A 81 VDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLKESIK-D 156 (206)
T ss_dssp EECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHHHHHHH-H
T ss_pred EECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHHHHHHH-H
Confidence 9999977 356778889999999999987766 6667777777654 36778999999964433334444443 3
Q ss_pred hCCc
Q 008294 235 LGAK 238 (571)
Q Consensus 235 l~~~ 238 (571)
+|..
T Consensus 157 ~~~~ 160 (206)
T 4dzz_A 157 TGVK 160 (206)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 6643
No 224
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.20 E-value=9.6e-07 Score=90.82 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=50.3
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCC-------C--Cch--hHHHHHHHHHh----cCCCeEEEEecC
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA-------G--VEP--QSETVWRQADK----YGVPRICFVNKM 217 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~-------g--~~~--~~~~~~~~~~~----~~~p~ivviNK~ 217 (571)
+...+.+|||+|+..|...+..+++.++++|+|+|.++ . ... .....+..+.. .++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 35789999999999999999999999999999999871 1 111 12223333332 478999999999
Q ss_pred Cccc
Q 008294 218 DRLG 221 (571)
Q Consensus 218 D~~~ 221 (571)
|+..
T Consensus 261 DL~~ 264 (354)
T 2xtz_A 261 DIFE 264 (354)
T ss_dssp HHHH
T ss_pred chhh
Confidence 9853
No 225
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.16 E-value=2.9e-06 Score=84.63 Aligned_cols=61 Identities=26% Similarity=0.329 Sum_probs=43.5
Q ss_pred EEcCCCCC-CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 159 IIDTPGHV-DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 159 liDTPG~~-~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+-+.|||. ....++...+..+|+++.|+|+.++.......+-+.+ .++|.++|+||+|+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD 64 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC
Confidence 44679997 4677889999999999999999987766533332222 5799999999999865
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.15 E-value=1.5e-06 Score=94.97 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=60.0
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEE---eecCeEEEEEcCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT---YWNKHRINIIDTP 163 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~---~~~~~~i~liDTP 163 (571)
..+...|+|+|.+|+|||||+|+|+ |..... .+ .++ . ++.|........ ...+..+.|+|||
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~---g~~~~~-~~-~~t-t---------~~~T~gi~~~~~~~~~~~~~~i~LiDTp 99 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLA---GKKKGF-SL-GST-V---------QSHTKGIWMWCVPHPKKPGHILVLLDTE 99 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHT---TCSSCS-CC-CCS-S---------SCCCCSEEEEEEECSSSTTCEEEEEEEC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHc---CCCCcc-cc-CCC-C---------CCceeEEEEeecccccCCCceEEEecCC
Confidence 4567899999999999999999996 321110 10 111 0 111211111111 1256789999999
Q ss_pred CCCCcHH------HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHH
Q 008294 164 GHVDFTL------EVERALRVLDGAICLFDSVAGVEPQSETVWRQAD 204 (571)
Q Consensus 164 G~~~f~~------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~ 204 (571)
|..+... ....++...-..++|+|+..++..+....+..+.
T Consensus 100 Gi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~ 146 (592)
T 1f5n_A 100 GLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVT 146 (592)
T ss_dssp CBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHH
T ss_pred CcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHH
Confidence 9875322 1222223211226788888888888877665544
No 227
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.10 E-value=1.5e-05 Score=78.43 Aligned_cols=60 Identities=12% Similarity=0.141 Sum_probs=42.1
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH----HHHHH---H-hcCCCeEEEEec-CCcccc
Q 008294 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET----VWRQA---D-KYGVPRICFVNK-MDRLGA 222 (571)
Q Consensus 163 PG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~----~~~~~---~-~~~~p~ivviNK-~D~~~~ 222 (571)
.|+..+...+..++..+|++|+|||+++.......+ +...+ . ..++|++|+.|| -|++++
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 477888999999999999999999998654322222 11222 1 258999999997 587654
No 228
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.93 E-value=6.9e-06 Score=82.71 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=40.4
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCC-chhHH-HHHHHHHhcCCCeEEEEecCCccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGV-EPQSE-TVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~-~~~~~-~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+..+......+++.+|++++|+|+.+.. ..... ..+..+...++|.++|+||+|+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~ 124 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLN 124 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCC
Confidence 3444333335788999999999998764 44332 334456668999999999999864
No 229
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.92 E-value=1.8e-05 Score=81.95 Aligned_cols=63 Identities=17% Similarity=0.016 Sum_probs=41.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 157 INIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 157 i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
+.-+|+| +++|........+.+|++++|+|+.+.......++.+.+ .++|+++|+||+|+...
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPR 113 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCT
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCC
Confidence 4444554 778888888888999999999999875543322222222 27899999999998653
No 230
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.87 E-value=8.6e-05 Score=75.22 Aligned_cols=146 Identities=15% Similarity=0.107 Sum_probs=74.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHh---cCCcceeeeeecCccc-ccchhhhh----hhceeEe-eceEE---------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTAT-MDWMEQEQ----ERGITIT-SAATT--------- 149 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~g~~~-~d~~~~e~----~~g~t~~-~~~~~--------- 149 (571)
.....|+++|..|+||||++..|... .|........+..... .+....-. ..++.+- .....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 45678999999999999999988632 2211111111110000 00000000 2233322 11000
Q ss_pred -E---eecCeEEEEEcCCCCCCcHHHHHHHHH------------hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EE
Q 008294 150 -T---YWNKHRINIIDTPGHVDFTLEVERALR------------VLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-IC 212 (571)
Q Consensus 150 -~---~~~~~~i~liDTPG~~~f~~~~~~~l~------------~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iv 212 (571)
+ ...++.+.||||||...........+. .+|.+++|+|+..+ .......+.... ..++ =+
T Consensus 183 ~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~~-~~~i~Gv 259 (320)
T 1zu4_A 183 AIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFSK-VADVSGI 259 (320)
T ss_dssp HHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHTT-TSCCCEE
T ss_pred HHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHhh-cCCCcEE
Confidence 0 015789999999997664333222221 26899999999754 222222222221 2333 37
Q ss_pred EEecCCccccchhhhHHHHHHHhCCc
Q 008294 213 FVNKMDRLGANFFRTRDMIVTNLGAK 238 (571)
Q Consensus 213 viNK~D~~~~~~~~~~~~i~~~l~~~ 238 (571)
|+||+|.... . ..+..+...++..
T Consensus 260 Vltk~d~~~~-~-g~~~~~~~~~~~P 283 (320)
T 1zu4_A 260 ILTKMDSTSK-G-GIGLAIKELLNIP 283 (320)
T ss_dssp EEECGGGCSC-T-THHHHHHHHHCCC
T ss_pred EEeCCCCCCc-h-hHHHHHHHHHCcC
Confidence 8999996432 2 3445566666653
No 231
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.86 E-value=8.6e-05 Score=78.88 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=72.6
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeee--ecCccccc--c--hh-hhhhhceeEeeceEEEe----------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMD--W--ME-QEQERGITITSAATTTY---------- 151 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~--~~g~~~~d--~--~~-~e~~~g~t~~~~~~~~~---------- 151 (571)
....|+|+|..|+|||||++.|...... ..|.+ ..+..+.. . .. ....+++.+........
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~ 369 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence 4568999999999999999998632110 01111 11111110 0 00 01123332221110000
Q ss_pred ---ecCeEEEEEcCCCCCCcHHH-------HHHHHHh-----cCeEEEEEeCCCCCchhHHHHHHHHHh-cCCCeEEEEe
Q 008294 152 ---WNKHRINIIDTPGHVDFTLE-------VERALRV-----LDGAICLFDSVAGVEPQSETVWRQADK-YGVPRICFVN 215 (571)
Q Consensus 152 ---~~~~~i~liDTPG~~~f~~~-------~~~~l~~-----~D~~ilVvda~~g~~~~~~~~~~~~~~-~~~p~ivviN 215 (571)
..++.+.||||+|....... +.+.++. .+-++||+|+..|.. .....+.+.. .++ ..+|+|
T Consensus 370 ~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~--al~~ak~f~~~~~i-tgvIlT 446 (503)
T 2yhs_A 370 AAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN--AVSQAKLFHEAVGL-TGITLT 446 (503)
T ss_dssp HHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH--HHHHHHHHHHHTCC-SEEEEE
T ss_pred HHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH--HHHHHHHHHhhcCC-CEEEEE
Confidence 14678999999998543222 2222221 356899999987622 2223333332 333 457899
Q ss_pred cCCccccchhhhHHHHHHHhCC
Q 008294 216 KMDRLGANFFRTRDMIVTNLGA 237 (571)
Q Consensus 216 K~D~~~~~~~~~~~~i~~~l~~ 237 (571)
|+|-. ..-..+-.+...++.
T Consensus 447 KLD~t--akgG~~lsi~~~~~~ 466 (503)
T 2yhs_A 447 KLDGT--AKGGVIFSVADQFGI 466 (503)
T ss_dssp CGGGC--SCCTHHHHHHHHHCC
T ss_pred cCCCc--ccccHHHHHHHHHCC
Confidence 99953 223344555556664
No 232
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.84 E-value=1.6e-05 Score=79.19 Aligned_cols=60 Identities=22% Similarity=0.271 Sum_probs=35.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|.+|+|||||+|+|+ |...... ....|+|.......+ +..+.++||||...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~---~~~~~~~--------------~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLA---KKNIAKT--------------GDRPGITTSQQWVKV---GKELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH---TSCCC--------------------------CCEEE---TTTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHh---cCceeec--------------CCCCCeeeeeEEEEe---CCCEEEEECcCcCC
Confidence 345789999999999999999997 2211111 112345555443322 45799999999864
No 233
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.83 E-value=0.00012 Score=69.26 Aligned_cols=140 Identities=16% Similarity=0.102 Sum_probs=81.0
Q ss_pred EEEEE-cCCCCchHHHHHHHHHh---cCCcceeeeeecCcccccchhhhhhhcee--Eeec-eEEEeecCeEEEEEcCCC
Q 008294 92 NIGIM-AHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATMDWMEQEQERGIT--ITSA-ATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 92 ~I~iv-G~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~g~~~~d~~~~e~~~g~t--~~~~-~~~~~~~~~~i~liDTPG 164 (571)
.|+|+ +..|+||||+.-.|... .| ..-.-..+.......+... .... +-.. ...-....+.+.+||||+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~---~~l~~~vi~~~~l~~l~~~yD~viiD~p~ 77 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKR---GSLPFKVVDERQAAKYAPKYQNIVIDTQA 77 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHH---SCCSSEEEEGGGHHHHGGGCSEEEEEEEC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcC---CCCCcceeCHHHHHHhhhcCCEEEEeCCC
Confidence 45554 77899999999988633 23 2222222232222222111 0000 0000 000012568899999999
Q ss_pred C-CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc-CCCeEEEEecCCccc-cchhhhHHHHHHHhCCc
Q 008294 165 H-VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-GVPRICFVNKMDRLG-ANFFRTRDMIVTNLGAK 238 (571)
Q Consensus 165 ~-~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~p~ivviNK~D~~~-~~~~~~~~~i~~~l~~~ 238 (571)
. ... .+..++..+|.+|+++.+...-.......++.+... +.+..+|+|+.|... ....++.+.+++ +|..
T Consensus 78 ~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~l~~-~g~~ 151 (209)
T 3cwq_A 78 RPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQLLTT-AGLP 151 (209)
T ss_dssp CCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHHHHHH-TTCC
T ss_pred CcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHHHHHH-cCCc
Confidence 7 543 456788899999999987643334455566666663 678889999999754 334445555554 6643
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.77 E-value=4.6e-05 Score=77.42 Aligned_cols=141 Identities=17% Similarity=0.050 Sum_probs=72.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHh----cCCcceeeeeecCcccccchhh------hhhhceeEeeceEEE-------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFY----TGRNYKIGEVHEGTATMDWMEQ------EQERGITITSAATTT------- 150 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~----~g~~~~~g~~~~g~~~~d~~~~------e~~~g~t~~~~~~~~------- 150 (571)
.+...++++|+.|+|||||++.|... .|.+.-.+. + ....... -...|+.+.......
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~-D----~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~ 201 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS-D----TFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY 201 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE-C----CSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee-c----ccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence 34568999999999999999998632 121111111 0 0000011 122233221110000
Q ss_pred ------eecCeEEEEEcCCCCCCc----HHHHHH--HHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 151 ------YWNKHRINIIDTPGHVDF----TLEVER--ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 151 ------~~~~~~i~liDTPG~~~f----~~~~~~--~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
...++.+.++||+|.... ..++.. ..-..|-.++++|+..+. +.....+.+.+.--...+++||+|
T Consensus 202 e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 202 DAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 013566889999997442 333222 122358999999987763 333333433332234478899999
Q ss_pred ccccchhhhHHHHHHHhCC
Q 008294 219 RLGANFFRTRDMIVTNLGA 237 (571)
Q Consensus 219 ~~~~~~~~~~~~i~~~l~~ 237 (571)
.. +..-. +-.+....+.
T Consensus 280 ~~-a~~G~-~l~~~~~~~~ 296 (328)
T 3e70_C 280 AD-ARGGA-ALSISYVIDA 296 (328)
T ss_dssp GC-SCCHH-HHHHHHHHTC
T ss_pred Cc-cchhH-HHHHHHHHCC
Confidence 63 22222 3344444554
No 235
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.75 E-value=6.7e-05 Score=82.84 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=40.9
Q ss_pred CeEEEEEcCCCCCCc---------HHHHHHHH----Hhc-CeEEEEEeCCCCCch-hHHHHHHHHHhcCCCeEEEEecCC
Q 008294 154 KHRINIIDTPGHVDF---------TLEVERAL----RVL-DGAICLFDSVAGVEP-QSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 154 ~~~i~liDTPG~~~f---------~~~~~~~l----~~~-D~~ilVvda~~g~~~-~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
...+.|+|.||.... ...+...+ ..- ..+++++++...... ....+.+.+...+.+.|+|+||.|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 456999999986531 12222222 222 566667776544332 234455555566889999999999
Q ss_pred cccc
Q 008294 219 RLGA 222 (571)
Q Consensus 219 ~~~~ 222 (571)
+...
T Consensus 226 lv~~ 229 (608)
T 3szr_A 226 LVDK 229 (608)
T ss_dssp GSSS
T ss_pred hcCc
Confidence 9754
No 236
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.74 E-value=0.00043 Score=67.85 Aligned_cols=86 Identities=8% Similarity=-0.061 Sum_probs=60.9
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccc------cch-
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG------ANF- 224 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~------~~~- 224 (571)
..+.+.|||||+..........++..+|.+|+|+.............++.++..+++.+ +|+|+.|... ...
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 206 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIF 206 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTT
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCcccccccccc
Confidence 56889999999976543333334457899999998876555566677777888889987 8999998421 111
Q ss_pred -hhhHHHHHHHhCCc
Q 008294 225 -FRTRDMIVTNLGAK 238 (571)
Q Consensus 225 -~~~~~~i~~~l~~~ 238 (571)
...++++.+.+|..
T Consensus 207 ~~~~~~~~~~~~g~~ 221 (262)
T 2ph1_A 207 GEGKGESLAKKYNIG 221 (262)
T ss_dssp CCCCHHHHHHHTTCS
T ss_pred cccHHHHHHHHcCCC
Confidence 34577888888764
No 237
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.72 E-value=3.5e-05 Score=79.74 Aligned_cols=54 Identities=11% Similarity=-0.079 Sum_probs=38.2
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh--cCCCeEEEEecCCcccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
.++|...+....+.+|++++|+|+.+.... ....+.+ .++|+++|+||+|+...
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~~~----~~~~l~~~~~~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFNGS----WLPGLHRFVGNNKVLLVGNKADLIPK 111 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHHHH----CCTTHHHHSSSSCEEEEEECGGGSCT
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCccc----HHHHHHHHhCCCcEEEEEEChhcCCc
Confidence 456777787888888999999999863211 1111222 37899999999998643
No 238
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.69 E-value=1.7e-05 Score=78.16 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=39.3
Q ss_pred CCCCCc-HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 163 PGHVDF-TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 163 PG~~~f-~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
|||... ..++...+..+|+++.|+|+.++.......+ ..+ ++|.++|+||+|+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll---~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS---RKETIILLNKVDIAD 60 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT---TSEEEEEEECGGGSC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc---CCCcEEEEECccCCC
Confidence 898754 5688999999999999999997765543221 112 899999999999865
No 239
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=97.68 E-value=0.00022 Score=59.73 Aligned_cols=77 Identities=22% Similarity=0.207 Sum_probs=56.3
Q ss_pred CCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCC-ceeecceEEEeccCceeecCeecCCCEEEE--eCCC-
Q 008294 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG-KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 462 (571)
Q Consensus 387 ~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~-~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~- 462 (571)
..|....|.+.+.-=+ |.+..|||.+|+|++|+.| +.+ ...+|.+|.. ..+++++|.+||.|++ .|..
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~----~~e~v~eA~~GdnVai~Ikg~~~ 103 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIER----NREKVEFAIAGDRIGISIEGKIG 103 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEE----TTEEESEEETTCEEEEEEESCCC
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEE----CCcCcCCcCCCCEEEEEEECCcc
Confidence 4566677777443334 8889999999999999999 333 4556666654 2378999999999998 4443
Q ss_pred Cccccceec
Q 008294 463 DTITGETLC 471 (571)
Q Consensus 463 ~~~~Gdtl~ 471 (571)
++..||+|.
T Consensus 104 ~I~~GdVLy 112 (116)
T 1xe1_A 104 KVKKGDVLE 112 (116)
T ss_dssp CCCTTCEEE
T ss_pred ccCCCcEEE
Confidence 677788775
No 240
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.62 E-value=0.00027 Score=74.17 Aligned_cols=145 Identities=16% Similarity=0.174 Sum_probs=74.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCcc-cccch-hhhhhhceeEeeceE-----E--------E
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA-TMDWM-EQEQERGITITSAAT-----T--------T 150 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~~-~~d~~-~~e~~~g~t~~~~~~-----~--------~ 150 (571)
....|+++|..|+||||++..|.... |........+.... ..+.. ......|+.+..... . +
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999997332 21111111111110 00000 011122333222100 0 0
Q ss_pred eecCeEEEEEcCCCCCCcHHHHH------HHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccc
Q 008294 151 YWNKHRINIIDTPGHVDFTLEVE------RALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN 223 (571)
Q Consensus 151 ~~~~~~i~liDTPG~~~f~~~~~------~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~ 223 (571)
...++.+.||||||......... ......|.+++|+|+..+. ......+.... .++ .-+|+||+|... .
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f~~-~l~i~GVIlTKlD~~~-~ 252 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFDE-KVGVTGLVLTKLDGDA-R 252 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHH-HTCCCEEEEESGGGCS-S
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHHHh-cCCceEEEEeCcCCcc-c
Confidence 12568899999999765422222 1223579999999997652 22222222222 244 467899999642 2
Q ss_pred hhhhHHHHHHHhCCc
Q 008294 224 FFRTRDMIVTNLGAK 238 (571)
Q Consensus 224 ~~~~~~~i~~~l~~~ 238 (571)
.. ....+...+|..
T Consensus 253 ~g-~alsi~~~~g~P 266 (425)
T 2ffh_A 253 GG-AALSARHVTGKP 266 (425)
T ss_dssp CH-HHHHHHHHHCCC
T ss_pred HH-HHHHHHHHHCCC
Confidence 22 233455566653
No 241
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.62 E-value=0.00028 Score=70.87 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=73.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHh---cCCcceeeeeecCc-ccccch-hhhhhhceeEeece-------------EE
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGT-ATMDWM-EQEQERGITITSAA-------------TT 149 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~g~-~~~d~~-~~e~~~g~t~~~~~-------------~~ 149 (571)
.+...|+++|+.|+||||++..|... .|........+... ...+.. ..-...|+.+-... ..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 34568999999999999999998632 22111111111100 000000 00112233321100 00
Q ss_pred EeecCeEEEEEcCCCCCCcHHHHHH-------HHH-----hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecC
Q 008294 150 TYWNKHRINIIDTPGHVDFTLEVER-------ALR-----VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (571)
Q Consensus 150 ~~~~~~~i~liDTPG~~~f~~~~~~-------~l~-----~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~ 217 (571)
....++.+.|+||||.......... .+. ..|.+++|+|+..+ .......+...+.--..-+|+||+
T Consensus 182 a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i~gvVlTk~ 259 (306)
T 1vma_A 182 ALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVTGIILTKL 259 (306)
T ss_dssp HHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCCEEEEECG
T ss_pred HHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCCCEEEEeCC
Confidence 0124678999999997554333222 111 25888999999733 112222222222212235678999
Q ss_pred CccccchhhhHHHHHHHhCCc
Q 008294 218 DRLGANFFRTRDMIVTNLGAK 238 (571)
Q Consensus 218 D~~~~~~~~~~~~i~~~l~~~ 238 (571)
|.. +.. ..+-++...++..
T Consensus 260 D~~-~~g-G~~l~~~~~~~~P 278 (306)
T 1vma_A 260 DGT-AKG-GITLAIARELGIP 278 (306)
T ss_dssp GGC-SCT-THHHHHHHHHCCC
T ss_pred CCc-cch-HHHHHHHHHHCCC
Confidence 963 222 2355666666653
No 242
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.59 E-value=0.00055 Score=68.71 Aligned_cols=143 Identities=19% Similarity=0.141 Sum_probs=72.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee-cCcccccc---h--hh-hhhhceeEeeceEE----------E-
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDW---M--EQ-EQERGITITSAATT----------T- 150 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~-~g~~~~d~---~--~~-e~~~g~t~~~~~~~----------~- 150 (571)
+...|+++|+.|+|||||++.|....... .|++. .+...... . .. ....++.+-..... +
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 35689999999999999999996321110 01110 01100000 0 00 01122221111000 0
Q ss_pred --eecCeEEEEEcCCCCCCcHH----HH---HHHHH-----hcCeEEEEEeCCCCCchhHHHHHHHHH-hcCCCeEEEEe
Q 008294 151 --YWNKHRINIIDTPGHVDFTL----EV---ERALR-----VLDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICFVN 215 (571)
Q Consensus 151 --~~~~~~i~liDTPG~~~f~~----~~---~~~l~-----~~D~~ilVvda~~g~~~~~~~~~~~~~-~~~~p~ivviN 215 (571)
...+..+.++||+|..+... +. ..++. ..+.+++++|+..+.. ....+..+. ..++ .++++|
T Consensus 179 ~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~-t~iivT 255 (304)
T 1rj9_A 179 AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGL-TGVIVT 255 (304)
T ss_dssp HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCC-SEEEEE
T ss_pred HHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCC-cEEEEE
Confidence 01345678999999754322 21 11211 2477889999987643 223333333 3344 578899
Q ss_pred cCCccccchhhhHHHHHHHhCCc
Q 008294 216 KMDRLGANFFRTRDMIVTNLGAK 238 (571)
Q Consensus 216 K~D~~~~~~~~~~~~i~~~l~~~ 238 (571)
|.|.. +. ...+-.+...++..
T Consensus 256 h~d~~-a~-gg~~l~i~~~~~~p 276 (304)
T 1rj9_A 256 KLDGT-AK-GGVLIPIVRTLKVP 276 (304)
T ss_dssp CTTSS-CC-CTTHHHHHHHHCCC
T ss_pred CCccc-cc-ccHHHHHHHHHCCC
Confidence 99864 22 23444666667653
No 243
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.57 E-value=0.00027 Score=70.94 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=53.2
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh----cCCCeE-EEEecCCccccchhhh
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPRI-CFVNKMDRLGANFFRT 227 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~----~~~p~i-vviNK~D~~~~~~~~~ 227 (571)
+.+.+.|||||+..... .+..++..+|.+|+|+.+...-.......++.+.. .+++++ +|+|+.+.. ..
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-----~~ 228 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DE 228 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HH
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-----HH
Confidence 45889999999865422 23456788999999997753222334444555554 355555 899999842 34
Q ss_pred HHHHHHHhCCcce
Q 008294 228 RDMIVTNLGAKPL 240 (571)
Q Consensus 228 ~~~i~~~l~~~~~ 240 (571)
++++.+.+|....
T Consensus 229 ~~~~~~~~g~~v~ 241 (307)
T 3end_A 229 VDRFCKETNFRRL 241 (307)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHHHHcCCCce
Confidence 6677777776443
No 244
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.57 E-value=3.6e-05 Score=75.75 Aligned_cols=58 Identities=22% Similarity=0.277 Sum_probs=35.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
.+++++|.+|+|||||+|+|..... ...+. ..|+|....... -+..+++|||||..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~--~~~~~---------------~~g~T~~~~~~~---~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA--SSVGA---------------QPGITKGIQWFS---LENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC---------------------------CCSCEEE---CTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc--cccCC---------------CCCCccceEEEE---eCCCEEEEECCCcccC
Confidence 5899999999999999999972111 11111 134454443222 2357899999998763
No 245
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.46 E-value=0.00022 Score=69.69 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=55.4
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHH---Hh---cCCCeE-EEEecCCccccchh
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA---DK---YGVPRI-CFVNKMDRLGANFF 225 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~---~~---~~~p~i-vviNK~D~~~~~~~ 225 (571)
..+.+.|||||+.... ....++..+|.+|+|+.+...-.......++.+ .. .+++++ +|+|+.|.......
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 4688999999997653 356678889999999988542222223333333 22 256664 88999986544345
Q ss_pred hhHHHHHHHhCCc
Q 008294 226 RTRDMIVTNLGAK 238 (571)
Q Consensus 226 ~~~~~i~~~l~~~ 238 (571)
+..+.+++.+|..
T Consensus 188 ~~~~~l~~~~~~~ 200 (257)
T 1wcv_1 188 QVEAQLRAHFGEK 200 (257)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHcccc
Confidence 5677788777653
No 246
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.41 E-value=0.00065 Score=67.75 Aligned_cols=83 Identities=12% Similarity=0.011 Sum_probs=57.4
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh------cCCCeE-EEEecCCccccchh
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK------YGVPRI-CFVNKMDRLGANFF 225 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~------~~~p~i-vviNK~D~~~~~~~ 225 (571)
..+.+.|||||+.... ....++..+|.+|+++.+...-.......+..+.. .+++++ +|+|+.|.......
T Consensus 153 ~~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~ 230 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIK 230 (298)
T ss_dssp GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHH
T ss_pred cCCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHH
Confidence 3578999999997653 34567778999999998875444444444444433 266754 78999997554445
Q ss_pred hhHHHHHHHhCC
Q 008294 226 RTRDMIVTNLGA 237 (571)
Q Consensus 226 ~~~~~i~~~l~~ 237 (571)
+.++++.+.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (298)
T 2oze_A 231 SNLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhcc
Confidence 667778887764
No 247
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.39 E-value=0.00072 Score=67.60 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=71.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh---cCCcceeeeeecCcccc-c-chhhhhhhceeEeece-----EE--------E
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATM-D-WMEQEQERGITITSAA-----TT--------T 150 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~g~~~~-d-~~~~e~~~g~t~~~~~-----~~--------~ 150 (571)
....++++|..|+||||++..|... .|........+...... . ........|+.+-... .. +
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998632 22111111111111000 0 0000112233222110 00 0
Q ss_pred eecCeEEEEEcCCCCCCcH----HHHHHHH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccc
Q 008294 151 YWNKHRINIIDTPGHVDFT----LEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN 223 (571)
Q Consensus 151 ~~~~~~i~liDTPG~~~f~----~~~~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~ 223 (571)
...++.+.|+||||..... .++.... ...|.+++|+|+..+ .......+.... .++ .-+|+||+|... .
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~-~ 252 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA-R 252 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCS-S
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCc-c
Confidence 0146889999999865432 2221111 247899999998753 222222222222 244 457899999643 2
Q ss_pred hhhhHHHHHHHhCC
Q 008294 224 FFRTRDMIVTNLGA 237 (571)
Q Consensus 224 ~~~~~~~i~~~l~~ 237 (571)
.. .+-++...++.
T Consensus 253 ~g-~~~~~~~~~~~ 265 (295)
T 1ls1_A 253 GG-AALSARHVTGK 265 (295)
T ss_dssp CH-HHHHHHHHHCC
T ss_pred HH-HHHHHHHHHCc
Confidence 22 23344455554
No 248
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.34 E-value=0.00028 Score=70.62 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=70.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh----cCCcceeeeeecCc-ccccchh-hhhhhceeEeece-------EEEeecCe
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY----TGRNYKIGEVHEGT-ATMDWME-QEQERGITITSAA-------TTTYWNKH 155 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~----~g~~~~~g~~~~g~-~~~d~~~-~e~~~g~t~~~~~-------~~~~~~~~ 155 (571)
+...|+++|+.|+||||++..|... .|........+... ...+... .....|+.+.... .--...++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 4568999999999999999998632 23211111111110 0000000 0011122111000 00012567
Q ss_pred EEEEEcCCCCCCcHHHHHH----HHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcC-CC-eEEEEecCCccccchhhh
Q 008294 156 RINIIDTPGHVDFTLEVER----ALR--VLDGAICLFDSVAGVEPQSETVWRQADKYG-VP-RICFVNKMDRLGANFFRT 227 (571)
Q Consensus 156 ~i~liDTPG~~~f~~~~~~----~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~-~p-~ivviNK~D~~~~~~~~~ 227 (571)
.+.|+||||.......... .+. ..|.+++|+|+.++.. .+...+.... ++ .-+|+||+|... ... .
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~----~~~~~~~~~~~l~~~giVltk~D~~~-~~g-~ 257 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE----DMKHIVKRFSSVPVNQYIFTKIDETT-SLG-S 257 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH----HHHHHTTTTSSSCCCEEEEECTTTCS-CCH-H
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH----HHHHHHHHHhcCCCCEEEEeCCCccc-chh-H
Confidence 8999999998765433222 222 2467899999986521 1222222221 22 346779999653 222 2
Q ss_pred HHHHHHHhCC
Q 008294 228 RDMIVTNLGA 237 (571)
Q Consensus 228 ~~~i~~~l~~ 237 (571)
+..+...++.
T Consensus 258 ~~~~~~~~~~ 267 (296)
T 2px0_A 258 VFNILAESKI 267 (296)
T ss_dssp HHHHHHTCSC
T ss_pred HHHHHHHHCc
Confidence 3334444553
No 249
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.31 E-value=0.00056 Score=65.95 Aligned_cols=86 Identities=13% Similarity=0.236 Sum_probs=57.8
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHHH
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMI 231 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i 231 (571)
..+.+.|||||+.... ....++..+|.+|+|+++...-........+.+...+++ +.+|+||.+. ....+++
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~-----~~~~~~~ 202 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN-----IKEEKLI 202 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC-----HHHHHHH
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC-----hhHHHHH
Confidence 5789999999986553 456778999999999987542233344455566666765 5688999983 2245667
Q ss_pred HHHhCCcceeeecc
Q 008294 232 VTNLGAKPLVVQLP 245 (571)
Q Consensus 232 ~~~l~~~~~~~~~p 245 (571)
.+.++.......+|
T Consensus 203 ~~~~~~~~~~~~Ip 216 (254)
T 3kjh_A 203 KKHLPEDKILGIIP 216 (254)
T ss_dssp HHHSCGGGEEEEEE
T ss_pred HHHhcCCccccccc
Confidence 77777433333344
No 250
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.30 E-value=0.0008 Score=70.93 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=58.5
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeee---eecCcccccchhhhhhhceeEeeceEEEee---cCeEE
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGE---VHEGTATMDWMEQEQERGITITSAATTTYW---NKHRI 157 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~---~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---~~~~i 157 (571)
..++-.|+|+|..++|||||+|+|+... +.....|. ...+-.+.. ...-..+|+-+......... ....+
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~-t~~~~T~GIw~~~~p~~~~~~~~~~~~v 142 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG-GSERETTGIQIWSEIFLINKPDGKKVAV 142 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCC-SSCCCCCEEEEESSCEEEECSSSCEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCC-CCCCceeEEEEecCccccccCCCCcceE
Confidence 4568899999999999999999998541 00000000 000000000 00111234333322222211 23679
Q ss_pred EEEcCCCCCCcHH-----HHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHH
Q 008294 158 NIIDTPGHVDFTL-----EVERALR--VLDGAICLFDSVAGVEPQSETVWRQA 203 (571)
Q Consensus 158 ~liDTPG~~~f~~-----~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~ 203 (571)
.|+||||..+-.. ..+.++. .++..| +.....+.....+.+..+
T Consensus 143 vllDTeG~~~~~~~~~~d~~ifal~~lLSs~~I--yN~~~~i~~~~l~~L~~~ 193 (447)
T 3q5d_A 143 LLMDTQGTFDSQSTLRDSATVFALSTMISSIQV--YNLSQNVQEDDLQHLQLF 193 (447)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHHHHHHCSEEE--EEESSSCCHHHHHHHHHH
T ss_pred EEEcCCcccccccchhhhHHHHHHHHHHhhHHH--HhhcccccHHHHHHHHHH
Confidence 9999999876432 1233333 356544 444556666666655543
No 251
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.21 E-value=0.0014 Score=62.69 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=57.5
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccccchhhhHHHH
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMI 231 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~~~~~~~~i 231 (571)
..+.+.|||||+... .....++..+|.+|+|+++...-.......++.+...+.+. -+|+||.|..... ..++++
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~ 185 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRD--IPPEAA 185 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTC--CCHHHH
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccch--hHHHHH
Confidence 357899999998655 56677889999999999875433334455666666666654 4789999864332 456677
Q ss_pred HHHhCCc
Q 008294 232 VTNLGAK 238 (571)
Q Consensus 232 ~~~l~~~ 238 (571)
.+.++..
T Consensus 186 ~~~~~~~ 192 (237)
T 1g3q_A 186 EDVMEVP 192 (237)
T ss_dssp HHHHCSC
T ss_pred HHHhCcc
Confidence 7777753
No 252
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.20 E-value=0.0014 Score=63.80 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=57.4
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccchhhhHHHH
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMI 231 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~i 231 (571)
..+.+.|||||+... .....++..+|.+|+|+.+...-.......++.+...+.+.+ +|+|+.|..... ..++++
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~ 184 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGIE--MAKNEI 184 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTHH--HHHHHH
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCccccc--chHHHH
Confidence 468899999998665 567778899999999998754333344555666666666554 789999864332 456667
Q ss_pred HHHhCCc
Q 008294 232 VTNLGAK 238 (571)
Q Consensus 232 ~~~l~~~ 238 (571)
.+.++..
T Consensus 185 ~~~~~~~ 191 (263)
T 1hyq_A 185 EAILEAK 191 (263)
T ss_dssp HHHTTSC
T ss_pred HHHhCCC
Confidence 7767653
No 253
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.12 E-value=0.00095 Score=54.36 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=61.6
Q ss_pred EEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCce---eecceEEEeccCceeecCeecCCCEEEE--eCCCCcc
Q 008294 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKK---ERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTI 465 (571)
Q Consensus 391 ~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~---~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~ 465 (571)
.|-|-.+|..+.+|.+|-++|.+|.++.+..+++.+.+.- -++.+|.+.. .+|+++.+|.=|+| .+..++.
T Consensus 8 ~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~K----ddV~EV~~G~ECGi~l~~~~dik 83 (99)
T 1d1n_A 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYK----DDVREVAQGYECGLTIKNFNDIK 83 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSS----SCCSCCBTTCEEEEECTTCSSCS
T ss_pred EEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccc----cccceECCCcEEEEEEcCcCCCC
Confidence 3456666667888999999999999999999999988754 3455555444 88999999999999 4566789
Q ss_pred cccee
Q 008294 466 TGETL 470 (571)
Q Consensus 466 ~Gdtl 470 (571)
.||+|
T Consensus 84 ~GD~I 88 (99)
T 1d1n_A 84 EGDVI 88 (99)
T ss_dssp SCSEE
T ss_pred CCCEE
Confidence 99988
No 254
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.05 E-value=0.0027 Score=62.11 Aligned_cols=77 Identities=14% Similarity=0.079 Sum_probs=51.5
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCCeEEEEecCCccccchhhhHHH
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLGANFFRTRDM 230 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~ivviNK~D~~~~~~~~~~~~ 230 (571)
..+.+.|||||+... .....++..+|.+|+|+.+...-........+.+... +.++.+|+|+.+... ...++.+.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~-~~~~~~~~ 219 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNR-THKTLFEI 219 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTTC-SCCHHHHH
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCcc-hHHHHHHH
Confidence 457899999999664 4567788889999999988543333344555666655 457789999995332 23334444
Q ss_pred HH
Q 008294 231 IV 232 (571)
Q Consensus 231 i~ 232 (571)
++
T Consensus 220 l~ 221 (267)
T 3k9g_A 220 LK 221 (267)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 255
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=97.05 E-value=0.00044 Score=68.72 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=51.7
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCC----CCchhHHH-------------HH--HHHHh----cC-CC
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA----GVEPQSET-------------VW--RQADK----YG-VP 209 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~----g~~~~~~~-------------~~--~~~~~----~~-~p 209 (571)
.+.+.|||||+.. ...+..++..+|.+|+|+.... +....... +| +.++. .+ .+
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 4789999999975 4567888999999999998752 21111111 11 22222 24 66
Q ss_pred eEEEEecCCccc-cchhhhHHHHHH---HhCC
Q 008294 210 RICFVNKMDRLG-ANFFRTRDMIVT---NLGA 237 (571)
Q Consensus 210 ~ivviNK~D~~~-~~~~~~~~~i~~---~l~~ 237 (571)
+.+|+|++|... ....++.+.+++ .+|.
T Consensus 181 ~~vV~N~~~~~~~~~~~~~~~~l~~~~~~~g~ 212 (286)
T 2xj4_A 181 WVVLRNRLATTEARNRKRLEDRLNALAKRVGF 212 (286)
T ss_dssp EEEEEECCTTCCGGGHHHHHHHHHHHHHHHCC
T ss_pred EEEEEeeecCCCcchhHHHHHHHHHHHHHcCC
Confidence 778999999755 333444444544 3664
No 256
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.05 E-value=0.0037 Score=62.56 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=66.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee-cCcccccch-----hhh-hhhceeEeeceEE-Ee---------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWM-----EQE-QERGITITSAATT-TY--------- 151 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~-~g~~~~d~~-----~~e-~~~g~t~~~~~~~-~~--------- 151 (571)
....++++|+.|+|||||+..|...... ..|++. .+....... ... ...++.+-..... ..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l 176 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 176 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHH
Confidence 4568999999999999999999633110 011111 111111110 000 1223333222111 10
Q ss_pred ----ecCeEEEEEcCCCCCCcHHHH-------HHHHH-----hcCeEEEEEeCCCCCchhHHHHHHHHH-hcCCCeEEEE
Q 008294 152 ----WNKHRINIIDTPGHVDFTLEV-------ERALR-----VLDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICFV 214 (571)
Q Consensus 152 ----~~~~~i~liDTPG~~~f~~~~-------~~~l~-----~~D~~ilVvda~~g~~~~~~~~~~~~~-~~~~p~ivvi 214 (571)
..+....++||.|...+.... ..++. ..+-+++|+|++.|...... ...+. ..++ .++++
T Consensus 177 ~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~-t~iii 253 (302)
T 3b9q_A 177 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLIL 253 (302)
T ss_dssp HHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEEE
T ss_pred HHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCC-CEEEE
Confidence 123457899999986643221 11221 23566899998877765543 23333 3444 46788
Q ss_pred ecCCcc
Q 008294 215 NKMDRL 220 (571)
Q Consensus 215 NK~D~~ 220 (571)
+|+|-.
T Consensus 254 ThlD~~ 259 (302)
T 3b9q_A 254 TKLDGS 259 (302)
T ss_dssp ECCSSC
T ss_pred eCCCCC
Confidence 999854
No 257
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.01 E-value=0.0015 Score=63.40 Aligned_cols=83 Identities=12% Similarity=0.094 Sum_probs=55.4
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcC---------CCeEEEEecCCccccch
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG---------VPRICFVNKMDRLGANF 224 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~---------~p~ivviNK~D~~~~~~ 224 (571)
.+.+.|||||+... .....++..+|.+|+|+++...-.......+..+...+ ....+|+|+.|......
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~ 190 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSR 190 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHT
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcccccc
Confidence 68999999998654 46778889999999999875432333444455554433 45678999998543211
Q ss_pred hh--hHHHHHHHhCCc
Q 008294 225 FR--TRDMIVTNLGAK 238 (571)
Q Consensus 225 ~~--~~~~i~~~l~~~ 238 (571)
.. .++++.+.++..
T Consensus 191 ~~~~~~~~~~~~~~~~ 206 (260)
T 3q9l_A 191 GDMLSMEDVLEILRIK 206 (260)
T ss_dssp TSSCCHHHHHHHHCSE
T ss_pred ccccCHHHHHHHhCCc
Confidence 11 246777777753
No 258
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.00 E-value=0.0017 Score=63.99 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=50.7
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCcc
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL 220 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~ 220 (571)
.+.+.|||||+..... ........+|.+|+|+.+...-........+.+...+.+++ +|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 4789999999976532 33445567899999999977666667777788888888877 889999954
No 259
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.94 E-value=0.0021 Score=64.25 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=51.7
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCcc
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL 220 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~ 220 (571)
.+.+.|||||+..... ........+|.+|+|+.+...........++.+...+++++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 4679999999976543 33344577999999999887767777788888888888766 789999954
No 260
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.82 E-value=0.013 Score=55.99 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=55.7
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC---CeEEEEecCCccccchhhhHHH
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV---PRICFVNKMDRLGANFFRTRDM 230 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~---p~ivviNK~D~~~~~~~~~~~~ 230 (571)
.+.+.|||||+.... ....++..+|.+|+|+.....-.......++.+...+. ..-+|+|+.|.... ...++
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~---~~~~~ 192 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSR---ITSDE 192 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT---SCHHH
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCC---CCHHH
Confidence 578999999997643 45667889999999998754333445556666766653 35688999986432 22367
Q ss_pred HHHHhCCc
Q 008294 231 IVTNLGAK 238 (571)
Q Consensus 231 i~~~l~~~ 238 (571)
+++.+|..
T Consensus 193 ~~~~~~~~ 200 (245)
T 3ea0_A 193 IEKVIGRP 200 (245)
T ss_dssp HHHHHTSC
T ss_pred HHHHhCCC
Confidence 77777763
No 261
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.80 E-value=0.0025 Score=63.29 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=51.6
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccc
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG 221 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~ 221 (571)
.+.+.|||||+..... ........+|.+|+|+.+...-.......++.+...+.+++ +|+||+|...
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 4679999999976543 34455677899999999876556666777888888888765 7899999643
No 262
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.79 E-value=0.0035 Score=52.86 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=59.1
Q ss_pred EEEEEEeecCCCce---EEEEEEecceeCCCCEEEeCCCCcee---ecceEEEeccCceeecCeecCCCEEEE--eCCC-
Q 008294 392 GLAFKIMSDPFVGS---LTFVRVYAGTLSAGSYVLNANKGKKE---RIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 462 (571)
Q Consensus 392 ~~V~k~~~d~~~G~---i~~~rV~sG~l~~gd~v~~~~~~~~~---~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~- 462 (571)
|-|-.+|..+.+|+ +|-++|..|.++.+..+++.+.+... ++.+|.+. ..+|+++.+|.=|+| .+.+
T Consensus 13 AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrf----KdDVkEV~~G~ECGi~l~~fni 88 (120)
T 2crv_A 13 ASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHH----KDDISVIKTGMDCGLSLDEEKV 88 (120)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESS----SSCCSEECTTCEEEEECSCTTS
T ss_pred EEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhccc----ccccceecCCCEEEEEEccCCC
Confidence 44555555556687 99999999999999999998887543 45555544 488999999999999 4667
Q ss_pred Ccccccee
Q 008294 463 DTITGETL 470 (571)
Q Consensus 463 ~~~~Gdtl 470 (571)
++..||+|
T Consensus 89 Dik~GDiI 96 (120)
T 2crv_A 89 EFKPGDQV 96 (120)
T ss_dssp CCCTTEEE
T ss_pred CCCCCCEE
Confidence 78899998
No 263
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.77 E-value=0.0055 Score=62.73 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=65.5
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee-cCcccccch-----hhh-hhhceeEeeceEE-Ee---------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWM-----EQE-QERGITITSAATT-TY--------- 151 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~-~g~~~~d~~-----~~e-~~~g~t~~~~~~~-~~--------- 151 (571)
....++++|+.|+|||||+..|...... ..|++. .+..+.... ... ...++.+...... ..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l 233 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 233 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHH
Confidence 4568999999999999999999733110 011111 111111100 000 1223332221110 00
Q ss_pred ----ecCeEEEEEcCCCCCCcHHHHH-------HHHH-----hcCeEEEEEeCCCCCchhHHHHHHHHH-hcCCCeEEEE
Q 008294 152 ----WNKHRINIIDTPGHVDFTLEVE-------RALR-----VLDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICFV 214 (571)
Q Consensus 152 ----~~~~~i~liDTPG~~~f~~~~~-------~~l~-----~~D~~ilVvda~~g~~~~~~~~~~~~~-~~~~p~ivvi 214 (571)
..+....++||.|......... .++. ..+-+++|+|++.|...... ...+. ..++ .++++
T Consensus 234 ~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~~~g~-t~iii 310 (359)
T 2og2_A 234 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLIL 310 (359)
T ss_dssp HHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEEE
T ss_pred HHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHHhcCC-eEEEE
Confidence 0234578999999866422211 1111 23567999998877665443 22333 3344 46789
Q ss_pred ecCCcc
Q 008294 215 NKMDRL 220 (571)
Q Consensus 215 NK~D~~ 220 (571)
+|+|-.
T Consensus 311 ThlD~~ 316 (359)
T 2og2_A 311 TKLDGS 316 (359)
T ss_dssp ESCTTC
T ss_pred ecCccc
Confidence 999853
No 264
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.71 E-value=0.0033 Score=63.41 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+++.++|+|..|+|||||++.|+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 5788999999999999999999843
No 265
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.67 E-value=0.0011 Score=66.58 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=36.1
Q ss_pred HHHhcCeEEEEEeCCCCCchhH--HHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 175 ALRVLDGAICLFDSVAGVEPQS--ETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 175 ~l~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.+..+|.+++|+|+.++..... .+.+..+...++|.++|+||+|+...
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIED 132 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCch
Confidence 5778899999999987655443 22333445689999999999998754
No 266
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.38 E-value=0.017 Score=56.30 Aligned_cols=84 Identities=13% Similarity=0.007 Sum_probs=49.4
Q ss_pred cCeEEEEEcCCCCCCcHHH-HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh----cCCCe-EEEEecCCccccchhh
Q 008294 153 NKHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPR-ICFVNKMDRLGANFFR 226 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~-~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~----~~~p~-ivviNK~D~~~~~~~~ 226 (571)
+.+.+.||||||....... .......+|.+|+|+.+...-.......++.+.. .+++. -+|+|+.+.. ...+
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--~~~~ 191 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA--NEYE 191 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS--CCHH
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc--hhHH
Confidence 3588999999996432111 1112246899999998753222222233344433 25564 4789998742 2245
Q ss_pred hHHHHHHHhCCc
Q 008294 227 TRDMIVTNLGAK 238 (571)
Q Consensus 227 ~~~~i~~~l~~~ 238 (571)
.++.+.+.+|..
T Consensus 192 ~~~~l~~~~~~~ 203 (269)
T 1cp2_A 192 LLDAFAKELGSQ 203 (269)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHcCCc
Confidence 677787778764
No 267
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.13 E-value=0.03 Score=55.28 Aligned_cols=85 Identities=9% Similarity=-0.099 Sum_probs=49.3
Q ss_pred cCeEEEEEcCCCCCCcHHH-HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh----cCCCe-EEEEecCCccccchhh
Q 008294 153 NKHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPR-ICFVNKMDRLGANFFR 226 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~-~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~----~~~p~-ivviNK~D~~~~~~~~ 226 (571)
..+.+.||||||....... .......+|.+|+++.+...-.......++.+.. .+++. -+|+|+.+.. ...+
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--~~~~ 194 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD--REDE 194 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT--THHH
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch--hHHH
Confidence 3688999999996431111 1122357899999997743212222233333332 35664 4788998732 2345
Q ss_pred hHHHHHHHhCCcc
Q 008294 227 TRDMIVTNLGAKP 239 (571)
Q Consensus 227 ~~~~i~~~l~~~~ 239 (571)
.++.+.+.+|...
T Consensus 195 ~~~~l~~~~g~~~ 207 (289)
T 2afh_E 195 LIIALANKLGTQM 207 (289)
T ss_dssp HHHHHHHHHTSCE
T ss_pred HHHHHHHHcCccc
Confidence 6777877787643
No 268
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.01 E-value=0.025 Score=59.30 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=62.7
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCC---cceeeee---ecCcccccchhhhhhhceeEeeceEEEee---cCeEE
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGR---NYKIGEV---HEGTATMDWMEQEQERGITITSAATTTYW---NKHRI 157 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~---~~~~g~~---~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---~~~~i 157 (571)
..++..|+|+|..++|||+|+|.|+...+. ....|.. ..|=.+.. ...-..+|+-++.....+.. .+..+
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~-~~~~~TkGIWmw~~p~~~~~~~g~~~~v 142 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG-GSERETTGIQIWSEIFLINKPDGKKVAV 142 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCC-SSSCCCCSEEEESSCEEEECTTSCEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCC-CCCCcCceEEEecCcccccCCCCCeeEE
Confidence 457889999999999999999987633210 0000000 00000000 11223456655554443332 23579
Q ss_pred EEEcCCCCCCcH-----HHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHH
Q 008294 158 NIIDTPGHVDFT-----LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQAD 204 (571)
Q Consensus 158 ~liDTPG~~~f~-----~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~ 204 (571)
.|+||.|..+-. ...+.++. .++..|+= ....+..+..+.+..+.
T Consensus 143 lllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN--~~~~i~~~~L~~L~~~t 194 (457)
T 4ido_A 143 LLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYN--LSQNVQEDDLQHLQLFT 194 (457)
T ss_dssp EEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEE--EESSCCHHHHHHHHHHH
T ss_pred EEEeccCCCCcccCccccHHHHHHHHHHhhheeec--ccccCCHHHHHHHHHHH
Confidence 999999986641 22333333 45665544 44466677666665443
No 269
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.89 E-value=0.0023 Score=64.11 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
...++++|++|+|||||+|+|+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHhc
Confidence 3589999999999999999995
No 270
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=95.71 E-value=0.084 Score=50.28 Aligned_cols=87 Identities=13% Similarity=0.027 Sum_probs=57.3
Q ss_pred cCeEEEEEcCCCCC-----CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccchhh
Q 008294 153 NKHRINIIDTPGHV-----DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFR 226 (571)
Q Consensus 153 ~~~~i~liDTPG~~-----~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~ 226 (571)
..+.+.+||+||.. +......-+-....-+|+|+++..+-...+...++.+...++++. +|+|++|........
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~ 188 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSNIKYIDE 188 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCHHH
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhhHH
Confidence 46789999999732 111112222222356889999987655566666677778888876 788999854333456
Q ss_pred hHHHHHHHhCCcc
Q 008294 227 TRDMIVTNLGAKP 239 (571)
Q Consensus 227 ~~~~i~~~l~~~~ 239 (571)
..+.+++.+|...
T Consensus 189 ~~~~l~~~~g~pv 201 (228)
T 3of5_A 189 QINTIEELSGYKC 201 (228)
T ss_dssp HHHHHHHHHSCCC
T ss_pred HHHHHHHhhCCCE
Confidence 6788888887643
No 271
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.67 E-value=0.14 Score=52.08 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=46.8
Q ss_pred cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCcccc----------chhhhHHHHHHHhCCcceeeeccCC
Q 008294 179 LDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA----------NFFRTRDMIVTNLGAKPLVVQLPVG 247 (571)
Q Consensus 179 ~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~----------~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (571)
.+++++|.-+..-....++..+..+++.++|+. +|+|++..... .+...++++.+.++..+ ...+|+.
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-l~~iPl~ 315 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKV-IAYVPLL 315 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSE-EEEEECC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCc-EEEecCC
Confidence 367888887765445667788899999999985 78899886421 14556777777776532 3445543
No 272
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.54 E-value=0.041 Score=56.13 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=29.5
Q ss_pred HHhcCeEEEEEeCCCCCchhHHH---HHHHHHhcCCCeEEEEecCCcccc
Q 008294 176 LRVLDGAICLFDSVAGVEPQSET---VWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 176 l~~~D~~ilVvda~~g~~~~~~~---~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
+..+|.+++| |+... ...... .+..+...++|.++|+||+|+...
T Consensus 128 ~anvD~v~iv-~a~~P-~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~ 175 (358)
T 2rcn_A 128 AANIDQIVIV-SAILP-ELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDD 175 (358)
T ss_dssp EECCCEEEEE-EESTT-TCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCH
T ss_pred HhcCCEEEEE-EeCCC-CCCHHHHHHHHHHHHhcCCCEEEEEECccCCCc
Confidence 4567988866 55543 222222 233445679999999999998754
No 273
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=95.50 E-value=0.027 Score=58.49 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=54.9
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCc-------hhHHHHHHHHHhcC--CCe---EEEEecCCcc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-------PQSETVWRQADKYG--VPR---ICFVNKMDRL 220 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~-------~~~~~~~~~~~~~~--~p~---ivviNK~D~~ 220 (571)
+.+.+.|||||.... ..+..++..+|.+|+|+.+..--. ....+.++.++..+ .++ +.++|+.+.
T Consensus 243 ~~yD~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~- 319 (398)
T 3ez2_A 243 SDYDFILVDSGPHLD--AFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSN- 319 (398)
T ss_dssp TTCSEEEEEECSCCS--HHHHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECS-
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCC-
Confidence 468899999998765 346778889999999997642100 11122334444443 333 446777763
Q ss_pred ccchhhhHHHHHHHhCCcceeeecc
Q 008294 221 GANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 221 ~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
........+++++.+|....+..+|
T Consensus 320 ~~~~~~~~~~l~~~~g~~vl~~~IP 344 (398)
T 3ez2_A 320 KADHKYCHSLAKEVFGGDMLDVFLP 344 (398)
T ss_dssp CHHHHHHHHHHHHHHGGGBCSCCEE
T ss_pred chhHHHHHHHHHHHhcccccceecc
Confidence 2224456778888888654433344
No 274
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.49 E-value=0.016 Score=57.87 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..++++|++|+|||||+|+|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999997
No 275
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=95.49 E-value=0.027 Score=60.26 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=59.9
Q ss_pred EEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCce---eecceEEEeccCceeecCeecCCCEEEE--eCCCCcccc
Q 008294 393 LAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKK---ERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITG 467 (571)
Q Consensus 393 ~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~---~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~~G 467 (571)
-|-.+|..+..|.++-++|..|+++.|..+++.+.+.. -+|.+|.+. ..+|+++..|.=|+| .+..++..|
T Consensus 412 ~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~----k~~v~e~~~g~ecgi~~~~~~~~~~g 487 (501)
T 1zo1_I 412 EVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRF----KDDVNEVRNGMECGIGVKNYNDVRTG 487 (501)
T ss_dssp EEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEET----TEEESEEETTCCEEEEBCCCTTCCTT
T ss_pred EEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhccc----CccccEECCCCEEEEEEcCcCCCCCC
Confidence 45566666777999999999999999999999888753 345555443 389999999999998 456678899
Q ss_pred ceec
Q 008294 468 ETLC 471 (571)
Q Consensus 468 dtl~ 471 (571)
|+|-
T Consensus 488 d~~~ 491 (501)
T 1zo1_I 488 DVIE 491 (501)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 9884
No 276
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.36 E-value=0.0047 Score=65.83 Aligned_cols=105 Identities=10% Similarity=0.081 Sum_probs=56.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchh-hhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWME-QEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~-~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
...|+++|.+|+||||+..+|....+..... +...+... .+...|. .....++|+.|...+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~------t~~~~~d~~r~~~~g~------------~~~~~ifd~~g~~~~ 100 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVP------TREFNVGQYRRDMVKT------------YKSFEFFLPDNEEGL 100 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCC------EEEEEHHHHHHHHHCS------------CCCGGGGCTTCHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCC------ceEEecchhhhhhccC------------CCcccccCCCCHHHH
Confidence 4689999999999999999997433210000 00000000 0011111 122346788886322
Q ss_pred --HHHH--------HHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhcCCCeEEE
Q 008294 169 --TLEV--------ERALRVLDGAICLFDSVAGVEPQSETVW-RQADKYGVPRICF 213 (571)
Q Consensus 169 --~~~~--------~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~~~p~ivv 213 (571)
.... ...+...++.++|+|++.. ....+..| ..+++.+.+++++
T Consensus 101 r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~~~vv~l 155 (469)
T 1bif_A 101 KIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNGYKTFFV 155 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcCCcEEEE
Confidence 2221 3445557888999999876 33344444 5556666665444
No 277
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.30 E-value=0.22 Score=49.97 Aligned_cols=66 Identities=15% Similarity=0.079 Sum_probs=45.3
Q ss_pred CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccc----------cchhhhHHHHHHHhCCcceeeeccC
Q 008294 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG----------ANFFRTRDMIVTNLGAKPLVVQLPV 246 (571)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~----------~~~~~~~~~i~~~l~~~~~~~~~pi 246 (571)
+.+++|.-+..-....++..+..+.+.++|+. +|+|++.... ..+.+.++++.+.++..+ ...+|+
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-~~~iPl 299 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKV-VAEVPL 299 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSE-EEEEEC
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCc-EEEecC
Confidence 48888887765445667788889999999985 7889987542 113456777888776432 234554
No 278
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=95.25 E-value=0.064 Score=57.81 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=62.4
Q ss_pred eEEEEEEEeecCC---CceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eC-CCC
Q 008294 390 FAGLAFKIMSDPF---VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AG-LKD 463 (571)
Q Consensus 390 ~~~~V~k~~~d~~---~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~g-l~~ 463 (571)
-.+.|-++|..+. .|.++-++|..|+++.|..+++.+.|.....++|-.+. +...+|+++..|.=|+| .+ ..+
T Consensus 448 g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk-~~k~~v~ev~~g~ecgi~~~~~~~~ 526 (537)
T 3izy_P 448 GEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLK-HHKDDTSVVKTGMDCGLSLDEEKIE 526 (537)
T ss_dssp SEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCC-CSSCCCSEEETTCEEEEESSSSCSS
T ss_pred EEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhc-ccCcccceEcCCCEEEEEEcCcccC
Confidence 3456666665543 57899999999999999999999988655555555555 44589999999999999 35 667
Q ss_pred cccccee
Q 008294 464 TITGETL 470 (571)
Q Consensus 464 ~~~Gdtl 470 (571)
+..||+|
T Consensus 527 ~~~gd~i 533 (537)
T 3izy_P 527 FKVGDAI 533 (537)
T ss_dssp CSCCCEE
T ss_pred CCCCCEE
Confidence 8899987
No 279
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.87 E-value=0.015 Score=53.15 Aligned_cols=24 Identities=4% Similarity=0.189 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.+.++|+|++|+|||||++.|...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999743
No 280
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.84 E-value=0.048 Score=56.99 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
....|+++|.+|+||||+..+|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999964
No 281
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.83 E-value=0.013 Score=54.66 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.+.++|+|++|+|||||++.|+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999973
No 282
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.67 E-value=0.017 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhc
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
+++++|+.|+|||||++.|....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997443
No 283
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.59 E-value=0.022 Score=53.13 Aligned_cols=27 Identities=7% Similarity=0.242 Sum_probs=22.9
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
..+.+.|+|+|++|+|||||+++|+..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 335678999999999999999999854
No 284
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.50 E-value=0.27 Score=44.67 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+...|+++|.+|+||||++..|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999963
No 285
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=94.41 E-value=0.18 Score=47.27 Aligned_cols=95 Identities=11% Similarity=0.004 Sum_probs=58.5
Q ss_pred cCeEEEEEcCCCCCCc-----HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccchhh
Q 008294 153 NKHRINIIDTPGHVDF-----TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFR 226 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f-----~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~ 226 (571)
+.+.+.||||||.... ......+....+.+|+|+++..+-..+....++.++..+++++ +|+|++|.......+
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~ 186 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAE 186 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHH
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHH
Confidence 4688999999976431 1111111122245788888754333445555666667788866 789999965444566
Q ss_pred hHHHHHHHhCCcceeeeccCCC
Q 008294 227 TRDMIVTNLGAKPLVVQLPVGA 248 (571)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~pi~~ 248 (571)
..+.+++.++..... .+|...
T Consensus 187 ~~~~l~~~~~~~vl~-~Ip~~~ 207 (224)
T 1byi_A 187 YMTTLTRMIPAPLLG-EIPWLA 207 (224)
T ss_dssp HHHHHHHHSSSCEEE-EECCCT
T ss_pred HHHHHHHHcCCCEEE-ECCCCc
Confidence 778888888765442 455443
No 286
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.33 E-value=0.019 Score=52.74 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+.++++|+.|+|||||++.|+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999973
No 287
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.16 E-value=0.03 Score=52.33 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHH
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
+....|+|+|++|+|||||++.|.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999996
No 288
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.08 E-value=0.03 Score=51.89 Aligned_cols=24 Identities=25% Similarity=0.094 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...++++|++|+|||||++.|...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 347899999999999999999744
No 289
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.04 E-value=0.33 Score=49.00 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=44.0
Q ss_pred CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccc---c---------chhhhHHHHHHHhCCcceeeeccC
Q 008294 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG---A---------NFFRTRDMIVTNLGAKPLVVQLPV 246 (571)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~---~---------~~~~~~~~i~~~l~~~~~~~~~pi 246 (571)
+.+++|.-+..-....++..+..+.+.++|+. +|+|++.-+. . ...+.++++.+.++.......+|+
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~~pl 302 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPL 302 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccCCCCEEEecC
Confidence 36777876654444567788899999999985 7889987321 1 145667888888864222334554
No 290
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.93 E-value=0.031 Score=52.25 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...++|+|+.|||||||++.|..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999999999973
No 291
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.92 E-value=0.034 Score=50.92 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
...|+++|++|+|||||++.|.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999996
No 292
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.91 E-value=0.033 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.+.++|+|.+|+|||||+++|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999999984
No 293
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.90 E-value=0.035 Score=51.94 Aligned_cols=24 Identities=25% Similarity=0.058 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...|+++|++|+|||||++.|+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457999999999999999999844
No 294
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.77 E-value=0.031 Score=52.87 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...++|+|++|+|||||++.|..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999999999973
No 295
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=93.75 E-value=0.44 Score=47.90 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=43.7
Q ss_pred CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCcccc-----------chhhhHHHHHHHhCCcceeeeccC
Q 008294 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA-----------NFFRTRDMIVTNLGAKPLVVQLPV 246 (571)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~-----------~~~~~~~~i~~~l~~~~~~~~~pi 246 (571)
+.+++|..+.......+...+..+...++|+. +|+|++..+.. ...+.++++.+.++.-++ ..+|.
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~-~~vP~ 299 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYEDFHV-VKVPQ 299 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTTTSEE-EEEEC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcCCCCE-EEecC
Confidence 46888887765445567788888999999986 68999983111 134556777777754332 44554
No 296
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.73 E-value=0.51 Score=47.89 Aligned_cols=66 Identities=15% Similarity=0.052 Sum_probs=43.4
Q ss_pred CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccc-c------------chhhhHHHHHHHhCCcceeeecc
Q 008294 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG-A------------NFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~-~------------~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
+.+++|.-+..-....+...+..+...++|+. +|+|++.-.. . .....++++.+.++. .....+|
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~-~~~~~~p 310 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYED-YHLVKMP 310 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTT-SEEEEEE
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccC-CCEEEec
Confidence 46788877655444567778889999999985 7889987533 1 134567778887742 2233455
Q ss_pred C
Q 008294 246 V 246 (571)
Q Consensus 246 i 246 (571)
+
T Consensus 311 l 311 (348)
T 3io3_A 311 L 311 (348)
T ss_dssp C
T ss_pred C
Confidence 4
No 297
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.69 E-value=0.053 Score=48.85 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+++|.+|+||||+++.|....|
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 46899999999999999999975444
No 298
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.65 E-value=0.037 Score=49.69 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..|+++|.+|+|||||.+.|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999975444
No 299
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.64 E-value=0.04 Score=49.28 Aligned_cols=25 Identities=12% Similarity=-0.176 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..|+|+|.+|+||||+.+.|....|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999975544
No 300
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.63 E-value=0.034 Score=50.37 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++++|++|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3478999999999999999864
No 301
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.62 E-value=0.038 Score=52.35 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
....++|+|+.|+|||||++.|+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999743
No 302
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=93.53 E-value=1.3 Score=42.61 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=49.6
Q ss_pred cCeEEEEEcCCCCC-----Cc-HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCc-cccch
Q 008294 153 NKHRINIIDTPGHV-----DF-TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDR-LGANF 224 (571)
Q Consensus 153 ~~~~i~liDTPG~~-----~f-~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~-~~~~~ 224 (571)
..+.+.+||+||-. +. .....-+-....-+|+|+|+..+-...+...++.+...++++. +|+||+.- .....
T Consensus 125 ~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~~~~~~~~ 204 (251)
T 3fgn_A 125 RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPPGLVA 204 (251)
T ss_dssp CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEECSSCCHHH
T ss_pred hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCCCchhhhh
Confidence 35789999999742 11 1122223333467899999987655556666677777888876 67899842 11112
Q ss_pred hhhHHHHHHH
Q 008294 225 FRTRDMIVTN 234 (571)
Q Consensus 225 ~~~~~~i~~~ 234 (571)
....+.|++.
T Consensus 205 ~~~~~~le~~ 214 (251)
T 3fgn_A 205 ASNRSALARI 214 (251)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHh
Confidence 3344555554
No 303
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.51 E-value=0.042 Score=49.26 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
..-.++++|+.|+|||||++.|...
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999743
No 304
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.49 E-value=0.043 Score=51.18 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
...|+|+|+.|+|||||++.|.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~ 27 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALA 27 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999996
No 305
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.47 E-value=0.043 Score=49.75 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=20.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+.+.++|+|..|+|||||+.+|+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999973
No 306
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.41 E-value=0.049 Score=50.48 Aligned_cols=27 Identities=33% Similarity=0.313 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
...|+++|.+|+|||||++.|....|.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 458999999999999999999754443
No 307
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.41 E-value=0.047 Score=48.69 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|+++|.+|+||||+.+.| ...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 46899999999999999999 5555
No 308
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.33 E-value=0.27 Score=53.67 Aligned_cols=40 Identities=5% Similarity=-0.049 Sum_probs=30.3
Q ss_pred eEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCcc
Q 008294 181 GAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL 220 (571)
Q Consensus 181 ~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~ 220 (571)
.+++|+.+.......+...+..+...+++.. +|+|+++..
T Consensus 200 ~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 200 RLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 6888888765445566777888888888765 779999854
No 309
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.30 E-value=0.043 Score=56.03 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..++++|++|+|||||+|.|+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHh
Confidence 478999999999999999997
No 310
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.26 E-value=0.05 Score=50.37 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...|+++|++|+|||||++.|..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 311
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.18 E-value=0.13 Score=56.25 Aligned_cols=67 Identities=6% Similarity=0.040 Sum_probs=43.8
Q ss_pred hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccc-----------cchhhhHHHHHHHhCCcceeeecc
Q 008294 178 VLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLG-----------ANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 178 ~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~-----------~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
.+|.+++|+.+.......+...+..+...+++. -+|+|+++-.. ....+.++++++.++. ++ ..+|
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~v-~~iP 566 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQHAS-RV-ALVP 566 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTTCS-SE-EEEE
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhcCC-cE-EEcc
Confidence 458899998765444455667778888888876 47899998541 1134456777777754 22 4455
Q ss_pred C
Q 008294 246 V 246 (571)
Q Consensus 246 i 246 (571)
.
T Consensus 567 ~ 567 (589)
T 1ihu_A 567 V 567 (589)
T ss_dssp C
T ss_pred C
Confidence 3
No 312
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.12 E-value=0.045 Score=50.94 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
+.+.|+++|++|+|||||++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45679999999999999999998554
No 313
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.12 E-value=0.044 Score=50.54 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHh
Q 008294 92 NIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
-|+|+|++|+|||||+++|+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999999854
No 314
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.06 E-value=0.055 Score=49.47 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..++++|++|+|||||++.|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999973
No 315
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.05 E-value=0.048 Score=52.28 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 3478999999999999999994
No 316
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.00 E-value=0.061 Score=49.82 Aligned_cols=26 Identities=23% Similarity=0.106 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+++|.+|+||||+...|....|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999975544
No 317
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.96 E-value=0.029 Score=51.03 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..++|+|.+|+|||||++.|+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 318
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.93 E-value=0.56 Score=46.16 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=21.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
....+.++|++|+|||+|+.++...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHH
Confidence 3458999999999999999999743
No 319
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.86 E-value=0.5 Score=43.75 Aligned_cols=23 Identities=17% Similarity=0.034 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...++++|++|+|||||+..|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999975
No 320
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.83 E-value=0.092 Score=48.51 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=24.3
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..+.+.|+|+|.+|+||||+...|....|
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567899999999999999999975554
No 321
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.79 E-value=0.054 Score=51.50 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999984
No 322
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.75 E-value=0.067 Score=48.63 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.++|+++|.+|+||||+...|....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999975544
No 323
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.73 E-value=0.066 Score=51.41 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
...|+|+|++|+|||||++.|....|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 358999999999999999999755454
No 324
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.71 E-value=0.069 Score=49.44 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.+.|+|+|.+|+|||||++.|....|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999975544
No 325
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.66 E-value=0.08 Score=51.54 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999995
No 326
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.59 E-value=0.065 Score=51.53 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999995
No 327
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.54 E-value=0.07 Score=48.03 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999974
No 328
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.54 E-value=0.071 Score=50.17 Aligned_cols=25 Identities=24% Similarity=0.041 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..|+|+|.+|+||||+++.|....|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999974433
No 329
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.53 E-value=0.074 Score=49.28 Aligned_cols=23 Identities=17% Similarity=-0.029 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...|+|+|.+|+|||||.+.|..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999963
No 330
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=92.52 E-value=0.38 Score=52.50 Aligned_cols=80 Identities=23% Similarity=0.352 Sum_probs=59.7
Q ss_pred CCeEEEEE--EEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCC--
Q 008294 388 EPFAGLAF--KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGL-- 461 (571)
Q Consensus 388 ~p~~~~V~--k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl-- 461 (571)
+|..+.|. .+|..+. |.++-++|..|+++.|..|.. +.+. ..++|-.+. +...+|++|..|.=|+| .+.
T Consensus 462 ~~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~~~--~~g~i~sl~-~~k~~v~~~~~g~e~gi~~~~~~~ 536 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DDGE--TVGTVESMQ-DKGENLKSASRGQKVAMAIKDAVY 536 (594)
T ss_dssp CCEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-TTSC--EEEEEEEEE-ETTEEESEEETTCCEEEEEETCCB
T ss_pred eeEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-cCCc--EEEEEehhc-ccCccccccCCCCEEEEEEeCccc
Confidence 45555544 3555566 899999999999999999998 5553 455565555 34489999999999998 444
Q ss_pred -CCccccceecC
Q 008294 462 -KDTITGETLCD 472 (571)
Q Consensus 462 -~~~~~Gdtl~~ 472 (571)
.++..||.|-.
T Consensus 537 ~~~~~~~d~~~~ 548 (594)
T 1g7s_A 537 GKTIHEGDTLYV 548 (594)
T ss_dssp TTTBCTTCEEEE
T ss_pred CCCCCCCCEEEE
Confidence 46888998854
No 331
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.48 E-value=0.097 Score=47.78 Aligned_cols=25 Identities=28% Similarity=0.159 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+..+|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999754
No 332
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.44 E-value=0.083 Score=47.61 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..|.++|.+|+||||+.+.|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999976544
No 333
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.43 E-value=0.061 Score=50.51 Aligned_cols=21 Identities=14% Similarity=-0.042 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999996
No 334
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.43 E-value=0.071 Score=49.49 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..|+++|.+|+||||+.+.|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999996
No 335
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.37 E-value=0.086 Score=52.81 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.0
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHH
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.+....|+|+|++|+|||||++.|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHH
Confidence 3456789999999999999999986
No 336
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.37 E-value=0.15 Score=51.13 Aligned_cols=27 Identities=30% Similarity=0.261 Sum_probs=22.9
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.+....|+|+|++|+|||||++.|...
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 455678999999999999999998633
No 337
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.36 E-value=0.098 Score=47.70 Aligned_cols=26 Identities=23% Similarity=0.101 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+++|.+|+||||+.+.|....|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999975444
No 338
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.36 E-value=0.083 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.6
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..-.++|+|+.|+|||||++.|+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHH
Confidence 34589999999999999999997
No 339
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.32 E-value=0.069 Score=51.23 Aligned_cols=21 Identities=14% Similarity=0.409 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999994
No 340
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.31 E-value=0.097 Score=47.52 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+++|.+|+||||+.+.|....|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999975444
No 341
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.31 E-value=0.067 Score=49.52 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..|+|+|.+|+||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999974
No 342
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.30 E-value=0.069 Score=52.05 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3478999999999999999994
No 343
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.28 E-value=0.084 Score=48.57 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.|+|+|.+|+||||+++.|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999975544
No 344
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.26 E-value=0.072 Score=50.78 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..++|+|+.|+|||||++.|.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999995
No 345
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.25 E-value=0.071 Score=51.29 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999995
No 346
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.24 E-value=0.074 Score=51.42 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999996
No 347
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.24 E-value=0.071 Score=52.10 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 478999999999999999995
No 348
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.21 E-value=0.072 Score=52.35 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999994
No 349
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.19 E-value=0.072 Score=51.76 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999994
No 350
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.16 E-value=0.086 Score=48.53 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.+...|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999754
No 351
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.15 E-value=0.073 Score=51.38 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999994
No 352
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.15 E-value=0.078 Score=52.85 Aligned_cols=23 Identities=9% Similarity=0.255 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
....++|+|++|+|||||++.|+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 34589999999999999999997
No 353
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.14 E-value=0.1 Score=48.49 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHH
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.....|+|+|.+|+|||||++.|.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999996
No 354
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.12 E-value=0.08 Score=48.18 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
+.|+|+|.+|+||||+++.|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999997443
No 355
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.12 E-value=0.055 Score=51.37 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=16.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
...++|+|++|+|||||++.|.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999996
No 356
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.11 E-value=0.077 Score=48.98 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.++++|+.|+|||||++.|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999999873
No 357
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.10 E-value=0.073 Score=50.24 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999994
No 358
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.05 E-value=0.095 Score=47.42 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.++|+++|.+|+||||+...|....|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999975544
No 359
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.01 E-value=0.078 Score=50.92 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999994
No 360
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.01 E-value=0.079 Score=51.69 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEEcCCCCcHHHHHHHHH
Confidence 3478999999999999999994
No 361
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=92.01 E-value=0.84 Score=43.72 Aligned_cols=83 Identities=10% Similarity=-0.094 Sum_probs=49.8
Q ss_pred cCeEEEEEcCCCCCC-----cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhh
Q 008294 153 NKHRINIIDTPGHVD-----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRT 227 (571)
Q Consensus 153 ~~~~i~liDTPG~~~-----f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~ 227 (571)
..+.+.|||.+|... ......-+-....-+|+|+++..|.-..+...++.++..+++.=+|+|+++-...-.+.+
T Consensus 130 ~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~~GvIlN~v~~~~~~~~~~ 209 (242)
T 3qxc_A 130 KTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSIS 209 (242)
T ss_dssp GTCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTHHHHHHHHHHHHHTSSSCEEEEECCCTTCCHHHHHT
T ss_pred hcCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCCEEEEEeCCCCccchhhhh
Confidence 467899999997321 111112222223458899999877555566667777788888557899998544222333
Q ss_pred HHHHHHHh
Q 008294 228 RDMIVTNL 235 (571)
Q Consensus 228 ~~~i~~~l 235 (571)
.--+.+.+
T Consensus 210 ~p~le~~~ 217 (242)
T 3qxc_A 210 LPYIELFN 217 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 33344433
No 362
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.98 E-value=0.18 Score=50.45 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHh
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+.+.|.|++|+|||+|+.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45789999999999999999754
No 363
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.93 E-value=0.29 Score=50.09 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=27.7
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCC
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 189 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~ 189 (571)
..+.+.|||||... ...+...+..+|.+++|+.+.
T Consensus 258 ~~yD~VIID~p~~~--~~~~~~~l~~aD~vivv~~~~ 292 (373)
T 3fkq_A 258 DNYDEIIVDLPFSL--EIEKLKLLSKAWRIIVVNDGS 292 (373)
T ss_dssp SCCSEEEEECCCCC--CHHHHHHHTTCSEEEEEECCC
T ss_pred CCCCEEEEeCCCCC--CHHHHHHHHHCCEEEEEecCC
Confidence 46789999999543 356778889999999998764
No 364
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.93 E-value=0.086 Score=51.53 Aligned_cols=21 Identities=24% Similarity=0.272 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999995
No 365
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.88 E-value=0.08 Score=52.70 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..++++|++|+|||||+|+|.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHS
T ss_pred CeEEEECCCCCcHHHHHHHhc
Confidence 478999999999999999995
No 366
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.87 E-value=0.11 Score=49.85 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
....|+|+|+.|+|||||++.|....|
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345799999999999999999974333
No 367
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.86 E-value=0.089 Score=50.14 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++++|+.|+|||||+..|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3478999999999999999886
No 368
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.86 E-value=0.12 Score=51.67 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHH
Confidence 3479999999999999999985
No 369
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.83 E-value=0.1 Score=47.64 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.+.|+++|.+|+||||+...|....|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999975544
No 370
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.82 E-value=0.11 Score=50.17 Aligned_cols=27 Identities=19% Similarity=0.004 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
...|+|+|+.|+|||||++.|....|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 458999999999999999999755453
No 371
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.82 E-value=0.074 Score=48.21 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
....++++|++|+|||||+.++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999996
No 372
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.81 E-value=0.1 Score=48.80 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+|+|+|.+|+||||+.+.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999975544
No 373
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.80 E-value=0.11 Score=47.24 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..|+++|.+|+||||+...|....|
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999975544
No 374
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.79 E-value=0.087 Score=50.93 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999994
No 375
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.77 E-value=0.087 Score=51.15 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999994
No 376
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.74 E-value=0.17 Score=52.15 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee-cCcccccchhhhhhhce
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGI 141 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~-~g~~~~d~~~~e~~~g~ 141 (571)
-.++++|+.|+|||||++.|. |.....|++. .|....+....+..+.+
T Consensus 48 e~~~llGpsGsGKSTLLr~ia---Gl~~~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFL---RLLNTEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHH---TCSEEEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CEEEEECCCCChHHHHHHHHh---CCCCCCeEEEECCEECCcCChHHHhCCE
Confidence 478999999999999999995 5444446553 33333333333333444
No 377
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.74 E-value=0.11 Score=48.61 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+|+|+|.+|+||||+...|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999975544
No 378
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.73 E-value=0.086 Score=50.09 Aligned_cols=26 Identities=23% Similarity=0.109 Sum_probs=22.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHH
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..++...|+|+|..|+|||||++.|.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHH
Confidence 44556789999999999999999986
No 379
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.70 E-value=0.11 Score=48.11 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=22.2
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHH
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..+...|+|+|.+|+|||||++.|..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999999863
No 380
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.70 E-value=0.12 Score=51.16 Aligned_cols=25 Identities=20% Similarity=0.012 Sum_probs=21.9
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHH
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..+...|+|+|.+|+|||||++.|.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999886
No 381
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=91.61 E-value=0.24 Score=51.32 Aligned_cols=90 Identities=19% Similarity=0.154 Sum_probs=54.8
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcCCC-----eEEEEecCCcc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVP-----RICFVNKMDRL 220 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p-----~ivviNK~D~~ 220 (571)
+.+.+.|||||+... ..+..++..+|.+|+|+.+..-- -......++.++..+.+ ++.++|+.|.
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~- 322 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG- 322 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC----
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC-
Confidence 457899999998765 45777888999999999764210 01122344445554433 3558899883
Q ss_pred ccchhhhHHHHHHHhCCcceeeecc
Q 008294 221 GANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 221 ~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
........+.+++.+|.......+|
T Consensus 323 ~~~~~~~~~~~~~~~g~~vl~~~IP 347 (403)
T 3ez9_A 323 KRDHETSHSLAREVYASNILDSSLP 347 (403)
T ss_dssp CHHHHHHHHHHHHHHTTSEECCC--
T ss_pred chhHHHHHHHHHHHhhHhhhceeCC
Confidence 2234456778888888755444455
No 382
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.60 E-value=0.091 Score=51.48 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3478999999999999999994
No 383
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.58 E-value=0.13 Score=47.36 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+|+|.+|+||||+...|....|
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999975544
No 384
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.58 E-value=0.093 Score=51.65 Aligned_cols=21 Identities=24% Similarity=0.075 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 478999999999999999994
No 385
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.57 E-value=0.11 Score=48.65 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+++|.+|+||||+...|....+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999975544
No 386
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.55 E-value=0.097 Score=47.56 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
..|+|+|.+|+||||+++.|....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999997543
No 387
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.49 E-value=0.095 Score=51.17 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 478999999999999999984
No 388
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.47 E-value=0.1 Score=47.04 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
++|+|+|.+|+||||+...|....|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3699999999999999999975544
No 389
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.46 E-value=0.13 Score=47.56 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..|+|.|.+|+||||+++.|....+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999975444
No 390
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.42 E-value=0.093 Score=49.27 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
--.++|+|++|+|||||+..|+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999996
No 391
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.41 E-value=0.099 Score=50.66 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999994
No 392
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.36 E-value=0.15 Score=46.25 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.+.|+++|.+|+||||+...|....|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999975444
No 393
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.35 E-value=0.75 Score=49.25 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..+.+.|.|++|+|||||+.++....+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999985554
No 394
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.35 E-value=0.16 Score=47.94 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=24.7
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..++.+.|.|+|++|+||+|+...|....|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 334567889999999999999999986555
No 395
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.32 E-value=0.12 Score=48.02 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...|+|+|.+|+||||+++.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999743
No 396
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.28 E-value=0.12 Score=47.67 Aligned_cols=24 Identities=21% Similarity=0.019 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...|+++|.+|+||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999743
No 397
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.28 E-value=0.13 Score=51.39 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHH
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.+...|+|+|+.|+|||||++.|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999963
No 398
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.26 E-value=0.14 Score=49.27 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.+...|+|.|.+|+||||+.+.|....|
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999975444
No 399
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.24 E-value=0.12 Score=48.70 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+|+|.+|+||||+.+.|....|
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999975544
No 400
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.09 E-value=0.67 Score=46.34 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...+|.+.|++|+|||+|+.++...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3457999999999999999999644
No 401
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.08 E-value=0.16 Score=48.74 Aligned_cols=27 Identities=11% Similarity=-0.058 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+...|+|+|.+|+||||+...|....|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999975544
No 402
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.07 E-value=0.093 Score=53.70 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.+++|+|++|+|||||++.|+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999997
No 403
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.06 E-value=0.14 Score=45.69 Aligned_cols=26 Identities=8% Similarity=0.263 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..+|+++|.+|+||||+...|....|
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999975444
No 404
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.98 E-value=0.39 Score=41.80 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.+|.+.|++|+|||+++.++.
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999995
No 405
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.97 E-value=0.1 Score=46.01 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
....++++|++|+|||||+.++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999997
No 406
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.95 E-value=0.12 Score=47.91 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+...|+|+|.+|+||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 407
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.86 E-value=0.14 Score=46.95 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|+++|.+|+||||+...|....|
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999975544
No 408
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.82 E-value=0.12 Score=52.67 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|++|+|||||+++|+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999997
No 409
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.82 E-value=0.14 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..+|+|+.|+|||||+++|....+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999975543
No 410
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.79 E-value=0.12 Score=50.25 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 378999999999999999994
No 411
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.75 E-value=0.12 Score=46.83 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|+|+|.+|+||||+...|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3699999999999999999975544
No 412
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.73 E-value=1.1 Score=45.26 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=21.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHH
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
....++.|.|++|+|||||+.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999973
No 413
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.71 E-value=0.16 Score=45.20 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+|+|+|.+|+||||+.+.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999975444
No 414
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.67 E-value=0.14 Score=45.85 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|+++|.+|+||||+...|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999975544
No 415
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.66 E-value=0.13 Score=52.47 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|||||||++.|.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCchHHHHHHHHh
Confidence 3478999999999999999995
No 416
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.66 E-value=0.16 Score=47.60 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...|+|+|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999963
No 417
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.66 E-value=0.13 Score=48.24 Aligned_cols=26 Identities=19% Similarity=0.022 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+|+|.+|+||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999975544
No 418
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.60 E-value=0.17 Score=49.98 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=23.4
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhc
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
..+...|+++|.+|+|||||+.+|....
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445789999999999999999998543
No 419
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.56 E-value=1 Score=44.49 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...+.|.|++|+|||+|+.++...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999643
No 420
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.47 E-value=0.16 Score=45.80 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...|+++|.+|+||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999963
No 421
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.45 E-value=0.17 Score=48.85 Aligned_cols=25 Identities=24% Similarity=0.076 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|+|+|.+|+|||||...|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4689999999999999999986555
No 422
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.42 E-value=0.13 Score=50.87 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 3478999999999999999994
No 423
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.37 E-value=0.13 Score=46.36 Aligned_cols=26 Identities=23% Similarity=0.046 Sum_probs=18.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+++|.+|+||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999975544
No 424
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.31 E-value=0.21 Score=50.46 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.--+.|.|.+|+|||||+-.+...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 346889999999999999988743
No 425
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.31 E-value=0.15 Score=46.47 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.|+++|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 426
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.30 E-value=0.13 Score=52.41 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|||||||++.|.
T Consensus 31 e~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHh
Confidence 478999999999999999995
No 427
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.28 E-value=0.096 Score=52.90 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.+++++|+.|+|||||++.|+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 479999999999999999996
No 428
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.17 E-value=0.076 Score=49.42 Aligned_cols=22 Identities=32% Similarity=0.155 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHh
Q 008294 92 NIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.|+|+|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
No 429
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.16 E-value=0.17 Score=51.98 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
....++|+|++|+|||||++.|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999997
No 430
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.12 E-value=0.4 Score=44.08 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+.+.+.|++|+|||+|+.++..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999973
No 431
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.10 E-value=0.15 Score=46.64 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.|++.|.+|+||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999963
No 432
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.09 E-value=0.17 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+|+|+|.+|+||||+.+.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999975444
No 433
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.06 E-value=0.15 Score=52.14 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...++|+|+.|+|||||++.|..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999963
No 434
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.95 E-value=0.18 Score=48.85 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...|+++|.+|+||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999743
No 435
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.92 E-value=0.18 Score=48.61 Aligned_cols=29 Identities=24% Similarity=-0.033 Sum_probs=23.9
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
......|+++|.+|+||||+...|....+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34457899999999999999999975543
No 436
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.89 E-value=0.17 Score=51.60 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 42 e~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 478999999999999999995
No 437
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.85 E-value=0.21 Score=47.37 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..+|+|+|.+|+||||+...|....+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999975544
No 438
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.79 E-value=0.16 Score=52.17 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|||||||++.|.
T Consensus 30 e~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHH
Confidence 478999999999999999995
No 439
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.72 E-value=0.17 Score=51.56 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHH
Confidence 478999999999999999995
No 440
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.72 E-value=1.9 Score=41.56 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=23.1
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
....+.+.+.|++|+|||+|+.++...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345689999999999999999999743
No 441
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.68 E-value=0.18 Score=51.53 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHh
Confidence 478999999999999999995
No 442
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.62 E-value=0.19 Score=53.81 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.+++|+|++|+|||||+++|+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999996
No 443
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.60 E-value=0.21 Score=46.65 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
+|+++|++||||+|+...|....|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5889999999999999999865553
No 444
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.56 E-value=0.18 Score=48.77 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.+|+|+|.+|+||||+.+.|....|
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999975444
No 445
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.51 E-value=0.23 Score=48.82 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
+...|+|+|.+|+||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999996
No 446
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.48 E-value=0.24 Score=44.41 Aligned_cols=23 Identities=22% Similarity=0.188 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...+.+.|++|+|||+|+.++..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999974
No 447
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.46 E-value=0.19 Score=51.63 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHH
Confidence 468999999999999999995
No 448
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.44 E-value=0.19 Score=51.53 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++++|+.|+|||||++.|.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHH
Confidence 3478999999999999999995
No 449
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.33 E-value=0.27 Score=45.38 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=23.6
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
......|+++|.+|+||||+.+.|....|
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34568999999999999999999975434
No 450
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.30 E-value=0.19 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.088 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.-.++|+|+.|+|||||+++|+.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999999999973
No 451
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.18 E-value=0.95 Score=45.99 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+-..+.|+|++|+|||||+..++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999999743
No 452
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.18 E-value=0.22 Score=48.71 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
+.++++|++|+|||||++++....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 349999999999999999997443
No 453
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.14 E-value=0.62 Score=45.85 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=21.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHH
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
....++.+.|++|+|||+|+.++..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998863
No 454
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.98 E-value=0.25 Score=46.58 Aligned_cols=24 Identities=29% Similarity=0.124 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.|+|+|.+|+||||+++.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999975544
No 455
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.95 E-value=0.24 Score=46.45 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..|+++|.+|+||||+.+.|....|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999975544
No 456
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.94 E-value=0.24 Score=43.59 Aligned_cols=23 Identities=17% Similarity=0.158 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhc
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
..+|+|+.|+|||||+++|.+..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999997543
No 457
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.85 E-value=0.15 Score=51.79 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 27 e~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 478999999999999999995
No 458
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.85 E-value=0.26 Score=47.06 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+|+|++|+||||+.+.|....|
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999975544
No 459
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.79 E-value=0.27 Score=45.73 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...|+++|.+|+||||+...|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999863
No 460
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.77 E-value=0.24 Score=46.38 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..++++|++|+|||||+..++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 478999999999999999997
No 461
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.47 E-value=0.27 Score=47.11 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHh
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+.++++|++|+|||||++++...
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999743
No 462
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.07 E-value=0.35 Score=45.91 Aligned_cols=26 Identities=23% Similarity=0.091 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
+...|+|.|.+|+||||+++.|....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999997443
No 463
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.04 E-value=1.2 Score=46.54 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=25.0
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
......+-|.+.|++|+|||+|+.++....+
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3345567899999999999999999975444
No 464
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.89 E-value=0.32 Score=44.72 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.|+|.|.+|+||||+...|....|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999975444
No 465
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.85 E-value=0.16 Score=51.68 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 32 e~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 478999999999999999995
No 466
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.72 E-value=0.36 Score=45.84 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=23.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.+...|+|+|.+|+||||+...|....|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999975444
No 467
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.57 E-value=0.48 Score=44.87 Aligned_cols=22 Identities=18% Similarity=0.021 Sum_probs=19.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..+|.+.|.+|+||||++-++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHH
Confidence 3679999999999999977775
No 468
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=87.51 E-value=0.55 Score=44.42 Aligned_cols=42 Identities=14% Similarity=-0.020 Sum_probs=29.6
Q ss_pred CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+.-+++||-..-+.....+.+..+...+++++++.-..|-.+
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~ 130 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG 130 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTS
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccC
Confidence 355788987765555455556666667999999998888544
No 469
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=87.47 E-value=0.3 Score=49.96 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHh
Q 008294 92 NIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
-.+|+|+.|+|||||++++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999744
No 470
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.45 E-value=0.13 Score=61.71 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.|||||++|+|||||++.|+
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHh
Confidence 3489999999999999999996
No 471
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.30 E-value=0.27 Score=43.96 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..+++.+.|++|+|||+|+.++..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999999974
No 472
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.27 E-value=0.2 Score=49.48 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=17.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.+.|+|.|.+|+||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999963
No 473
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.07 E-value=0.32 Score=51.50 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHh
Confidence 578999999999999999996
No 474
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=87.07 E-value=2.8 Score=43.90 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhc
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
...+.+.|++|+|||||+..+....
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Confidence 3689999999999999999997544
No 475
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.06 E-value=0.96 Score=45.85 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...+.|.|++|+|||||+..++.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998873
No 476
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.05 E-value=0.37 Score=46.97 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHh
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+.++++|++|+|||||+.++...
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHH
Confidence 35999999999999999999743
No 477
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=87.05 E-value=2.2 Score=42.51 Aligned_cols=27 Identities=15% Similarity=-0.028 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
....++.|.|++|+|||++++.++...
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999997443
No 478
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.04 E-value=0.3 Score=48.07 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|++|+|||||+..|.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQA 56 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 3478999999999999999986
No 479
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=87.00 E-value=0.31 Score=49.02 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..++++|++|+|||||++.+....+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4689999999999999999975443
No 480
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.98 E-value=0.35 Score=44.40 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+.+.+.|++|+|||+|+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999973
No 481
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.94 E-value=1.8 Score=43.08 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
..+.|.+.|++|+|||+|+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3478999999999999999999744
No 482
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.78 E-value=0.37 Score=45.15 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..+.+.+.|++|+|||||+.++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999974
No 483
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.77 E-value=0.43 Score=45.76 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.+.+.++|++|+|||||+.++...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999743
No 484
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=86.76 E-value=0.34 Score=49.15 Aligned_cols=27 Identities=26% Similarity=0.154 Sum_probs=22.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
.+--.++|+|+.|+|||||++.|....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344589999999999999999997543
No 485
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.69 E-value=0.38 Score=45.41 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...++|+|++|+|||||+..|+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34789999999999999999973
No 486
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.60 E-value=0.31 Score=51.43 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
....++|+|+.|+|||||++.|.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~ 159 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLC 159 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34679999999999999999996
No 487
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.54 E-value=0.39 Score=49.30 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHH
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.....++++|++|+|||||++.|..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3446899999999999999999973
No 488
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.17 E-value=5 Score=39.96 Aligned_cols=21 Identities=5% Similarity=-0.141 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.+.|.|++|+|||||+-.++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999888863
No 489
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.08 E-value=0.54 Score=51.43 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++++|+.|+|||||++.|.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4589999999999999999995
No 490
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.02 E-value=0.42 Score=47.02 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 491
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=85.99 E-value=0.51 Score=47.62 Aligned_cols=25 Identities=24% Similarity=0.066 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|+|+|++|+|||||...|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5799999999999999999986655
No 492
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=85.95 E-value=2.9 Score=46.89 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=50.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEE-cCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINII-DTPGHV 166 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~li-DTPG~~ 166 (571)
....++.+.|++|+|||+|+.++....+.. ...+.. ..+++. .++. .++ ..||+.
T Consensus 486 ~p~~~~ll~G~~GtGKT~la~~la~~l~~~--~~~i~~-s~~~~~--------~~~~-------------~l~g~~~g~~ 541 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEVTVQLSKALGIE--LLRFDM-SEYMER--------HTVS-------------RLIGAPPGYV 541 (758)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHHTCE--EEEEEG-GGCSSS--------SCCS-------------SSCCCCSCSH
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHhcCC--EEEEec-hhhcch--------hhHh-------------hhcCCCCCCc
Confidence 344589999999999999999997544311 001000 000000 0000 011 124533
Q ss_pred Cc--HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh
Q 008294 167 DF--TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK 205 (571)
Q Consensus 167 ~f--~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~ 205 (571)
.+ ......+++.+...++++|=.+.........+..+..
T Consensus 542 g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le 582 (758)
T 1r6b_X 542 GFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMD 582 (758)
T ss_dssp HHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred CccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhc
Confidence 22 1224556777888899999777666665555554443
No 493
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=85.93 E-value=0.82 Score=49.02 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...|+++|.+|+||||+...|...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999643
No 494
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.92 E-value=0.53 Score=47.15 Aligned_cols=25 Identities=24% Similarity=0.077 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|+|+|++|+|||||...|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999986654
No 495
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.87 E-value=0.4 Score=51.74 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..-.++++|+.|+|||||++.|.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34579999999999999999995
No 496
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=85.56 E-value=0.4 Score=52.28 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++++|+.|+|||||++.|.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFT 390 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999999999996
No 497
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=85.46 E-value=0.48 Score=51.60 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++++|+.|+|||||++.|.
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTT
T ss_pred CCEEEEECCCCChHHHHHHHHh
Confidence 3479999999999999999885
No 498
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=85.45 E-value=1.6 Score=44.43 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...+.|.|++|+|||||+-.++..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Confidence 346888999999999999998743
No 499
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.42 E-value=0.52 Score=43.69 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHh
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+-|+|+|++|+|||||+..|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999744
No 500
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.30 E-value=2 Score=41.13 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHh
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
..|.|.|++|+|||+|+.++...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 57899999999999999999744
Done!