Query 008295
Match_columns 571
No_of_seqs 355 out of 1305
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 22:00:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01363 FYVE: FYVE zinc finge 99.7 1.3E-18 2.8E-23 142.5 2.9 66 420-485 1-68 (69)
2 smart00064 FYVE Protein presen 99.7 3.9E-17 8.5E-22 133.3 4.2 66 420-485 2-67 (68)
3 KOG1729 FYVE finger containing 99.5 1.6E-15 3.4E-20 156.1 1.7 71 415-486 155-226 (288)
4 KOG1818 Membrane trafficking a 99.5 1.3E-14 2.9E-19 160.8 2.9 69 417-488 157-225 (634)
5 KOG1842 FYVE finger-containing 99.4 1.4E-14 3E-19 153.7 -0.1 98 419-517 171-291 (505)
6 PTZ00303 phosphatidylinositol 99.4 5E-14 1.1E-18 156.4 4.2 68 418-485 449-530 (1374)
7 cd00065 FYVE FYVE domain; Zinc 99.4 1.4E-13 3.1E-18 108.4 2.5 55 428-482 2-56 (57)
8 KOG1819 FYVE finger-containing 99.3 2E-13 4.4E-18 146.3 1.4 64 419-482 892-960 (990)
9 KOG0509 Ankyrin repeat and DHH 99.1 1.6E-11 3.5E-16 135.5 1.1 78 229-327 77-155 (600)
10 KOG1841 Smad anchor for recept 99.1 4.1E-11 8.9E-16 138.1 2.1 62 418-480 547-608 (1287)
11 KOG4412 26S proteasome regulat 99.0 2.3E-10 5E-15 110.9 2.8 79 227-326 69-148 (226)
12 PF13857 Ank_5: Ankyrin repeat 98.9 5.1E-11 1.1E-15 93.9 -2.2 55 269-324 1-56 (56)
13 PHA02859 ankyrin repeat protei 98.8 2.8E-10 6.1E-15 111.5 -1.8 61 263-324 66-130 (209)
14 KOG0509 Ankyrin repeat and DHH 98.8 1E-09 2.2E-14 121.5 1.3 108 218-327 101-222 (600)
15 KOG0195 Integrin-linked kinase 98.8 1.9E-09 4E-14 110.6 1.6 79 228-327 32-110 (448)
16 KOG4412 26S proteasome regulat 98.8 3.4E-09 7.4E-14 102.9 3.2 71 257-328 45-117 (226)
17 KOG0508 Ankyrin repeat protein 98.8 4.1E-09 8.8E-14 113.7 3.4 64 261-325 128-191 (615)
18 PHA02743 Viral ankyrin protein 98.8 1.1E-09 2.3E-14 103.6 -1.0 82 228-327 55-138 (166)
19 PHA02878 ankyrin repeat protei 98.7 1.6E-09 3.6E-14 117.5 -0.6 76 230-326 168-243 (477)
20 PHA02736 Viral ankyrin protein 98.7 2E-09 4.4E-14 99.4 -0.5 63 264-327 72-136 (154)
21 PF12796 Ank_2: Ankyrin repeat 98.7 1.9E-09 4.1E-14 90.3 -1.5 60 263-327 10-69 (89)
22 KOG0512 Fetal globin-inducing 98.7 4.6E-09 1E-13 101.4 0.9 79 228-327 95-173 (228)
23 PHA02791 ankyrin-like protein; 98.7 2.9E-09 6.2E-14 110.0 -0.8 66 261-327 72-138 (284)
24 KOG4177 Ankyrin [Cell wall/mem 98.7 4.4E-09 9.6E-14 124.1 0.6 70 257-327 547-616 (1143)
25 KOG0510 Ankyrin repeat protein 98.7 4.4E-09 9.6E-14 119.0 0.3 104 228-331 271-391 (929)
26 PHA02884 ankyrin repeat protei 98.7 3.4E-09 7.5E-14 110.4 -0.7 77 229-326 69-146 (300)
27 PHA02741 hypothetical protein; 98.6 3.6E-09 7.8E-14 99.9 -0.9 82 229-327 59-142 (169)
28 PHA02875 ankyrin repeat protei 98.6 3.8E-09 8.3E-14 111.9 -0.8 67 260-327 112-178 (413)
29 PHA02791 ankyrin-like protein; 98.6 3.9E-09 8.4E-14 109.0 -0.8 78 228-328 28-105 (284)
30 PHA02859 ankyrin repeat protei 98.6 4.5E-09 9.8E-14 103.0 -0.6 79 228-324 85-165 (209)
31 PHA02989 ankyrin repeat protei 98.6 5.6E-09 1.2E-13 114.2 -0.1 84 227-325 66-153 (494)
32 PHA02795 ankyrin-like protein; 98.6 5E-09 1.1E-13 114.0 -0.6 69 259-328 197-265 (437)
33 PHA03095 ankyrin-like protein; 98.6 8E-09 1.7E-13 110.7 0.2 64 263-327 237-300 (471)
34 PF12796 Ank_2: Ankyrin repeat 98.6 5.2E-09 1.1E-13 87.6 -1.9 57 257-314 33-89 (89)
35 PHA02741 hypothetical protein; 98.6 8E-09 1.7E-13 97.6 -1.3 79 229-328 20-109 (169)
36 PHA02874 ankyrin repeat protei 98.6 1E-08 2.3E-13 109.9 -0.7 80 228-328 122-201 (434)
37 PHA03095 ankyrin-like protein; 98.5 1.1E-08 2.4E-13 109.6 -0.5 79 229-325 46-125 (471)
38 PHA02946 ankyin-like protein; 98.5 1.4E-08 3.1E-13 110.5 0.1 64 261-325 50-113 (446)
39 PHA02716 CPXV016; CPX019; EVM0 98.5 1.6E-08 3.6E-13 116.5 -0.2 64 261-325 190-255 (764)
40 PHA02874 ankyrin repeat protei 98.5 1.6E-08 3.4E-13 108.5 -0.8 80 228-328 155-234 (434)
41 PHA02878 ankyrin repeat protei 98.5 1.3E-08 2.8E-13 110.6 -1.6 76 228-324 199-276 (477)
42 PHA02798 ankyrin-like protein; 98.5 1.9E-08 4E-13 110.0 -0.5 85 225-327 66-155 (489)
43 KOG0508 Ankyrin repeat protein 98.5 2.6E-08 5.7E-13 107.6 0.6 99 228-328 115-226 (615)
44 PLN03192 Voltage-dependent pot 98.5 2.1E-08 4.6E-13 116.6 -0.6 68 260-328 568-666 (823)
45 PHA02798 ankyrin-like protein; 98.5 1.8E-08 3.9E-13 110.1 -1.8 83 228-328 107-193 (489)
46 PHA02875 ankyrin repeat protei 98.5 3.1E-08 6.7E-13 105.0 0.0 70 257-327 142-212 (413)
47 PHA02730 ankyrin-like protein; 98.5 2.8E-08 6E-13 113.0 -0.7 82 228-326 39-123 (672)
48 PF13637 Ank_4: Ankyrin repeat 98.5 1.4E-08 3.1E-13 78.7 -2.1 54 230-303 1-54 (54)
49 PHA02946 ankyin-like protein; 98.4 2.8E-08 6.1E-13 108.3 -0.9 62 263-326 188-251 (446)
50 PHA03100 ankyrin repeat protei 98.4 4.3E-08 9.2E-13 105.5 -0.1 67 260-327 118-186 (480)
51 PHA02884 ankyrin repeat protei 98.4 3.9E-08 8.4E-13 102.6 -0.6 70 258-328 41-115 (300)
52 PHA02917 ankyrin-like protein; 98.4 4.9E-08 1.1E-12 111.5 -0.0 99 226-326 392-494 (661)
53 PHA02989 ankyrin repeat protei 98.4 3.7E-08 8.1E-13 107.7 -1.5 82 229-328 107-192 (494)
54 KOG1409 Uncharacterized conser 98.4 9.1E-08 2E-12 100.2 1.2 69 415-486 272-351 (404)
55 KOG4424 Predicted Rho/Rac guan 98.4 6.9E-08 1.5E-12 106.3 -0.1 63 419-484 408-471 (623)
56 KOG0502 Integral membrane anky 98.4 1.1E-07 2.3E-12 95.0 1.1 72 260-332 170-241 (296)
57 PHA02876 ankyrin repeat protei 98.4 7.2E-08 1.6E-12 109.4 -0.2 65 261-326 420-485 (682)
58 PTZ00322 6-phosphofructo-2-kin 98.3 8.7E-08 1.9E-12 109.4 -0.5 71 257-328 89-159 (664)
59 PLN03192 Voltage-dependent pot 98.3 8.7E-08 1.9E-12 111.6 -0.6 70 257-327 532-601 (823)
60 PHA02792 ankyrin-like protein; 98.3 7.7E-08 1.7E-12 108.7 -1.1 63 263-326 390-452 (631)
61 PHA03100 ankyrin repeat protei 98.3 1.6E-07 3.4E-12 101.2 1.0 70 258-328 81-152 (480)
62 PHA02876 ankyrin repeat protei 98.3 9.7E-08 2.1E-12 108.4 -0.7 100 227-327 304-418 (682)
63 PHA02743 Viral ankyrin protein 98.3 1.6E-07 3.5E-12 88.9 0.7 69 228-317 92-161 (166)
64 KOG1843 Uncharacterized conser 98.3 1.5E-07 3.2E-12 100.2 0.4 67 418-484 150-218 (473)
65 TIGR00870 trp transient-recept 98.3 5.1E-08 1.1E-12 111.8 -3.4 79 229-328 127-219 (743)
66 PHA02716 CPXV016; CPX019; EVM0 98.3 1.4E-07 3.1E-12 108.9 -0.2 62 261-323 330-405 (764)
67 KOG0514 Ankyrin repeat protein 98.3 1.6E-07 3.5E-12 99.1 0.1 67 257-324 347-414 (452)
68 COG0666 Arp FOG: Ankyrin repea 98.3 2.4E-07 5.1E-12 86.0 1.2 92 220-327 96-190 (235)
69 KOG0505 Myosin phosphatase, re 98.3 2.4E-07 5.2E-12 101.4 1.2 80 228-328 71-150 (527)
70 KOG0510 Ankyrin repeat protein 98.3 2.6E-07 5.7E-12 105.0 1.2 64 263-327 101-164 (929)
71 PHA02736 Viral ankyrin protein 98.2 2E-07 4.3E-12 86.2 -0.1 50 259-308 101-151 (154)
72 KOG0505 Myosin phosphatase, re 98.2 3E-07 6.4E-12 100.7 0.2 78 230-328 198-275 (527)
73 PHA02917 ankyrin-like protein; 98.2 3E-07 6.4E-12 105.1 -0.6 68 259-327 147-239 (661)
74 PF13857 Ank_5: Ankyrin repeat 98.2 1.3E-07 2.9E-12 74.4 -2.7 44 227-290 13-56 (56)
75 KOG0502 Integral membrane anky 98.2 8.7E-07 1.9E-11 88.6 2.3 96 228-324 158-266 (296)
76 PHA02795 ankyrin-like protein; 98.1 3.9E-07 8.5E-12 99.4 -1.3 68 228-316 219-294 (437)
77 KOG1710 MYND Zn-finger and ank 98.1 4E-07 8.6E-12 93.8 -1.5 77 229-326 44-121 (396)
78 KOG0515 p53-interacting protei 98.1 1.2E-06 2.5E-11 96.0 1.6 67 222-308 575-641 (752)
79 KOG0230 Phosphatidylinositol-4 98.1 2.1E-06 4.7E-11 102.6 3.5 51 427-488 4-54 (1598)
80 KOG0512 Fetal globin-inducing 98.0 9.2E-07 2E-11 85.8 -0.2 83 263-353 76-159 (228)
81 KOG4214 Myotrophin and similar 98.0 6.6E-07 1.4E-11 79.1 -1.4 74 222-320 30-103 (117)
82 KOG1811 Predicted Zn2+-binding 98.0 7E-07 1.5E-11 98.9 -2.4 65 419-483 313-382 (1141)
83 PHA02730 ankyrin-like protein; 98.0 1.3E-06 2.8E-11 99.7 -0.5 62 264-326 443-505 (672)
84 PTZ00322 6-phosphofructo-2-kin 97.9 2.1E-06 4.5E-11 98.3 0.4 73 228-321 113-192 (664)
85 COG0666 Arp FOG: Ankyrin repea 97.9 1.5E-06 3.3E-11 80.6 -0.6 69 260-328 83-158 (235)
86 KOG4177 Ankyrin [Cell wall/mem 97.9 3.1E-06 6.8E-11 100.6 1.5 92 220-332 199-290 (1143)
87 cd00204 ANK ankyrin repeats; 97.9 1.6E-06 3.4E-11 73.6 -0.9 78 229-327 6-83 (126)
88 KOG0507 CASK-interacting adapt 97.8 6E-06 1.3E-10 93.7 1.8 70 257-327 89-158 (854)
89 KOG0514 Ankyrin repeat protein 97.8 5.9E-06 1.3E-10 87.5 1.5 53 275-328 331-384 (452)
90 cd00204 ANK ankyrin repeats; 97.8 2.8E-06 6E-11 72.1 -0.8 79 228-327 38-116 (126)
91 KOG1729 FYVE finger containing 97.8 2.6E-06 5.7E-11 88.5 -1.4 64 420-483 12-81 (288)
92 KOG3676 Ca2+-permeable cation 97.8 2.6E-06 5.7E-11 97.1 -1.7 66 262-328 196-284 (782)
93 KOG0195 Integrin-linked kinase 97.8 5.9E-06 1.3E-10 85.4 0.6 65 259-324 76-140 (448)
94 KOG0507 CASK-interacting adapt 97.6 2.2E-05 4.9E-10 89.2 2.5 69 258-327 57-125 (854)
95 PF00023 Ank: Ankyrin repeat H 97.6 1E-05 2.2E-10 57.0 -0.3 32 282-314 1-32 (33)
96 PHA02792 ankyrin-like protein; 97.6 3.9E-05 8.4E-10 87.2 4.2 51 258-308 80-131 (631)
97 PF13606 Ank_3: Ankyrin repeat 97.6 1.3E-05 2.8E-10 56.1 -0.5 29 282-311 1-29 (30)
98 PF13637 Ank_4: Ankyrin repeat 97.5 7.8E-06 1.7E-10 63.3 -2.3 45 283-328 1-45 (54)
99 TIGR00870 trp transient-recept 97.5 1.5E-05 3.2E-10 91.8 -2.2 80 229-328 174-268 (743)
100 KOG0260 RNA polymerase II, lar 97.4 0.0029 6.3E-08 75.2 15.4 8 29-36 1446-1453(1605)
101 KOG0783 Uncharacterized conser 97.3 5.8E-05 1.3E-09 86.5 0.6 81 238-326 47-128 (1267)
102 KOG0515 p53-interacting protei 97.2 9.4E-05 2E-09 81.5 1.0 71 257-328 557-627 (752)
103 KOG0521 Putative GTPase activa 97.2 0.00011 2.3E-09 85.7 1.2 103 222-325 623-730 (785)
104 PF00023 Ank: Ankyrin repeat H 97.2 7.5E-05 1.6E-09 52.6 -0.1 33 229-281 1-33 (33)
105 KOG0522 Ankyrin repeat protein 97.2 8.8E-05 1.9E-09 81.8 0.3 76 232-327 22-98 (560)
106 KOG1924 RhoA GTPase effector D 97.2 0.0024 5.1E-08 73.4 10.8 43 262-308 715-757 (1102)
107 KOG1924 RhoA GTPase effector D 97.1 0.0023 5E-08 73.4 10.5 10 444-453 885-894 (1102)
108 KOG4369 RTK signaling protein 97.0 0.00028 6.1E-09 83.1 1.8 74 256-330 763-837 (2131)
109 PF13606 Ank_3: Ankyrin repeat 96.9 0.00025 5.4E-09 49.6 0.2 30 229-278 1-30 (30)
110 KOG0818 GTPase-activating prot 96.9 0.00026 5.7E-09 77.5 0.3 71 256-327 139-210 (669)
111 KOG4214 Myotrophin and similar 96.8 0.00026 5.5E-09 63.0 -0.2 74 257-332 9-82 (117)
112 KOG1842 FYVE finger-containing 96.7 0.0024 5.1E-08 69.5 5.5 118 427-571 78-195 (505)
113 KOG3676 Ca2+-permeable cation 96.5 0.00039 8.5E-09 79.9 -2.1 69 260-328 250-319 (782)
114 KOG0705 GTPase-activating prot 96.4 0.0007 1.5E-08 75.4 -0.5 68 257-325 631-702 (749)
115 PF02318 FYVE_2: FYVE-type zin 96.2 0.0038 8.1E-08 56.9 3.3 51 428-485 54-105 (118)
116 KOG0230 Phosphatidylinositol-4 96.2 0.0025 5.5E-08 77.3 2.4 34 423-458 92-125 (1598)
117 KOG0705 GTPase-activating prot 95.9 0.0031 6.7E-08 70.5 1.2 62 227-308 658-719 (749)
118 KOG4369 RTK signaling protein 95.8 0.0055 1.2E-07 72.7 3.0 98 229-327 958-1070(2131)
119 KOG3671 Actin regulatory prote 95.6 0.22 4.8E-06 55.4 14.1 9 12-20 316-324 (569)
120 KOG0506 Glutaminase (contains 95.5 0.0098 2.1E-07 65.4 3.2 67 257-324 513-580 (622)
121 KOG0818 GTPase-activating prot 95.1 0.0067 1.4E-07 66.9 0.4 60 226-305 163-222 (669)
122 KOG1710 MYND Zn-finger and ank 95.0 0.0048 1E-07 64.4 -0.9 69 261-329 23-91 (396)
123 KOG3671 Actin regulatory prote 94.7 0.81 1.8E-05 51.1 15.0 7 12-18 298-304 (569)
124 KOG0511 Ankyrin repeat protein 94.7 0.0076 1.6E-07 64.8 -0.4 52 257-308 43-94 (516)
125 KOG0783 Uncharacterized conser 94.7 0.012 2.6E-07 68.3 1.2 49 276-325 45-94 (1267)
126 KOG0520 Uncharacterized conser 94.3 0.02 4.3E-07 67.9 1.6 60 260-319 617-677 (975)
127 KOG0782 Predicted diacylglycer 93.5 0.011 2.4E-07 66.0 -2.1 67 257-324 906-974 (1004)
128 KOG2384 Major histocompatibili 93.5 0.016 3.5E-07 57.4 -0.8 51 273-324 2-53 (223)
129 KOG0522 Ankyrin repeat protein 93.4 0.021 4.6E-07 63.6 -0.2 54 231-304 56-109 (560)
130 KOG0521 Putative GTPase activa 92.5 0.046 1E-06 64.3 0.8 60 270-330 641-702 (785)
131 smart00248 ANK ankyrin repeats 92.3 0.031 6.6E-07 34.7 -0.5 26 283-308 2-27 (30)
132 KOG1830 Wiskott Aldrich syndro 91.7 6.1 0.00013 43.7 15.5 18 85-102 345-362 (518)
133 KOG1841 Smad anchor for recept 91.6 0.077 1.7E-06 63.5 1.3 57 417-486 646-702 (1287)
134 KOG2384 Major histocompatibili 89.8 0.099 2.1E-06 52.1 0.1 59 230-308 12-71 (223)
135 KOG0993 Rab5 GTPase effector R 89.3 0.017 3.6E-07 62.6 -6.1 65 420-486 460-526 (542)
136 KOG3576 Ovo and related transc 89.1 0.11 2.3E-06 52.2 -0.3 62 424-487 113-186 (267)
137 KOG1818 Membrane trafficking a 86.3 0.35 7.6E-06 55.5 1.6 53 429-482 55-108 (634)
138 TIGR00622 ssl1 transcription f 86.1 0.74 1.6E-05 42.2 3.3 54 420-481 47-110 (112)
139 TIGR00599 rad18 DNA repair pro 85.5 0.26 5.6E-06 54.0 0.1 32 427-462 25-56 (397)
140 smart00154 ZnF_AN1 AN1-like Zi 85.1 0.52 1.1E-05 35.2 1.5 27 431-459 1-27 (39)
141 KOG2505 Ankyrin repeat protein 83.4 0.41 8.8E-06 53.5 0.4 62 263-325 404-471 (591)
142 PF07975 C1_4: TFIIH C1-like d 82.2 0.37 8E-06 38.3 -0.3 44 430-481 1-50 (51)
143 KOG0307 Vesicle coat complex C 81.7 42 0.00091 41.2 15.9 21 298-321 954-974 (1049)
144 COG5432 RAD18 RING-finger-cont 80.6 0.38 8.2E-06 50.5 -1.0 29 428-461 25-54 (391)
145 KOG0520 Uncharacterized conser 79.7 0.95 2.1E-05 54.3 1.8 79 207-305 605-702 (975)
146 PRK00464 nrdR transcriptional 79.6 0.93 2E-05 43.6 1.4 26 429-454 1-38 (154)
147 PF13717 zinc_ribbon_4: zinc-r 79.2 1.1 2.5E-05 32.8 1.4 26 429-454 3-35 (36)
148 PF01363 FYVE: FYVE zinc finge 78.6 0.91 2E-05 37.0 0.9 21 551-571 4-24 (69)
149 KOG0307 Vesicle coat complex C 78.5 42 0.00092 41.1 14.6 7 283-289 925-931 (1049)
150 PF13719 zinc_ribbon_5: zinc-r 75.2 1.7 3.7E-05 31.9 1.4 26 429-454 3-35 (37)
151 KOG1985 Vesicle coat complex C 73.1 38 0.00081 40.6 12.1 15 469-483 603-617 (887)
152 KOG3173 Predicted Zn-finger pr 72.5 1.8 3.8E-05 42.3 1.2 28 428-458 105-132 (167)
153 KOG4275 Predicted E3 ubiquitin 72.4 0.6 1.3E-05 49.1 -2.2 48 427-483 43-90 (350)
154 KOG0320 Predicted E3 ubiquitin 72.2 0.59 1.3E-05 46.0 -2.1 48 428-485 131-178 (187)
155 KOG1923 Rac1 GTPase effector F 71.6 18 0.00038 42.9 9.0 11 24-34 263-273 (830)
156 PF09538 FYDLN_acid: Protein o 71.2 2.7 5.8E-05 38.3 2.0 27 428-454 9-36 (108)
157 KOG0506 Glutaminase (contains 69.2 1.9 4.2E-05 48.2 0.7 50 257-306 546-596 (622)
158 TIGR02300 FYDLN_acid conserved 67.8 3.3 7.1E-05 38.8 1.8 27 428-454 9-36 (129)
159 PHA02768 hypothetical protein; 66.7 2.4 5.2E-05 34.3 0.6 25 430-454 7-41 (55)
160 PF14634 zf-RING_5: zinc-RING 64.9 1.7 3.8E-05 32.6 -0.5 33 430-463 1-33 (44)
161 PF01485 IBR: IBR domain; Int 64.7 5.1 0.00011 31.4 2.2 33 428-460 18-56 (64)
162 KOG4849 mRNA cleavage factor I 64.3 1.5E+02 0.0032 32.6 13.4 11 294-304 409-419 (498)
163 KOG3799 Rab3 effector RIM1 and 63.7 5.5 0.00012 37.8 2.5 52 428-484 65-117 (169)
164 PRK03564 formate dehydrogenase 61.9 7.5 0.00016 41.5 3.4 56 428-484 187-262 (309)
165 TIGR00570 cdk7 CDK-activating 61.1 2.5 5.5E-05 44.9 -0.2 33 429-463 4-39 (309)
166 PF12773 DZR: Double zinc ribb 61.0 5.7 0.00012 30.4 1.8 27 427-453 11-38 (50)
167 KOG0978 E3 ubiquitin ligase in 60.1 1.1 2.4E-05 52.2 -3.3 47 426-483 641-687 (698)
168 smart00064 FYVE Protein presen 59.4 5.8 0.00013 32.1 1.6 21 551-571 5-25 (68)
169 KOG3795 Uncharacterized conser 59.2 4.3 9.4E-05 40.1 1.0 24 437-460 8-34 (230)
170 KOG2164 Predicted E3 ubiquitin 59.0 2.8 6.1E-05 47.1 -0.3 52 428-486 186-237 (513)
171 PF13639 zf-RING_2: Ring finge 58.6 3 6.6E-05 31.0 -0.1 34 429-463 1-34 (44)
172 KOG4739 Uncharacterized protei 56.8 3.9 8.4E-05 42.0 0.2 42 430-483 5-46 (233)
173 PF10571 UPF0547: Uncharacteri 55.9 6.6 0.00014 27.1 1.2 23 430-454 2-24 (26)
174 PRK04136 rpl40e 50S ribosomal 55.8 6.7 0.00015 30.9 1.3 23 428-452 14-36 (48)
175 KOG0782 Predicted diacylglycer 55.0 1.4 3.1E-05 50.0 -3.4 55 271-325 887-942 (1004)
176 KOG1814 Predicted E3 ubiquitin 54.9 5.2 0.00011 44.0 0.9 41 420-461 361-403 (445)
177 PF01529 zf-DHHC: DHHC palmito 54.3 6.7 0.00015 36.9 1.4 26 427-454 47-72 (174)
178 KOG1985 Vesicle coat complex C 54.0 1.1E+02 0.0025 36.8 11.3 26 12-38 10-35 (887)
179 KOG2932 E3 ubiquitin ligase in 53.5 6.6 0.00014 41.9 1.3 49 427-488 89-137 (389)
180 KOG3576 Ovo and related transc 52.6 2.5 5.3E-05 42.8 -1.9 55 428-482 145-220 (267)
181 smart00647 IBR In Between Ring 52.3 11 0.00024 29.5 2.2 32 429-460 19-56 (64)
182 PRK00398 rpoP DNA-directed RNA 52.0 8.3 0.00018 29.4 1.3 26 429-454 4-31 (46)
183 PF07282 OrfB_Zn_ribbon: Putat 51.7 9.6 0.00021 31.0 1.7 27 428-454 28-56 (69)
184 TIGR02098 MJ0042_CXXC MJ0042 f 50.9 8.9 0.00019 27.8 1.3 25 430-454 4-35 (38)
185 PRK14559 putative protein seri 50.6 8.4 0.00018 45.0 1.7 31 427-461 14-50 (645)
186 PF15135 UPF0515: Uncharacteri 50.2 9.8 0.00021 39.5 1.9 35 422-456 126-167 (278)
187 KOG3609 Receptor-activated Ca2 49.9 5 0.00011 47.6 -0.3 31 281-312 129-159 (822)
188 TIGR03826 YvyF flagellar opero 49.5 8.2 0.00018 36.6 1.2 26 445-485 4-29 (137)
189 PRK00432 30S ribosomal protein 49.4 11 0.00024 29.7 1.7 27 428-454 20-47 (50)
190 KOG1311 DHHC-type Zn-finger pr 48.9 9.9 0.00022 39.6 1.8 34 420-455 103-138 (299)
191 KOG0317 Predicted E3 ubiquitin 47.6 6.1 0.00013 41.7 -0.0 31 428-462 239-269 (293)
192 KOG1314 DHHC-type Zn-finger pr 46.6 6.8 0.00015 42.5 0.1 33 419-453 77-114 (414)
193 PLN03208 E3 ubiquitin-protein 46.4 4.4 9.5E-05 40.5 -1.2 55 427-485 17-79 (193)
194 KOG3896 Dynactin, subunit p62 46.2 6.7 0.00015 42.3 0.0 30 433-463 14-43 (449)
195 KOG2391 Vacuolar sorting prote 45.6 40 0.00087 36.6 5.6 13 49-61 147-159 (365)
196 PF06750 DiS_P_DiS: Bacterial 44.3 14 0.0003 32.6 1.7 25 428-452 33-66 (92)
197 PF13445 zf-RING_UBOX: RING-ty 44.1 8.3 0.00018 29.5 0.2 30 431-461 1-30 (43)
198 COG4338 Uncharacterized protei 44.0 8.6 0.00019 30.5 0.3 17 551-567 7-23 (54)
199 PF13923 zf-C3HC4_2: Zinc fing 43.1 8.8 0.00019 27.9 0.2 29 431-462 1-29 (39)
200 PF03604 DNA_RNApol_7kD: DNA d 41.7 16 0.00035 26.4 1.4 23 430-452 2-25 (32)
201 cd00162 RING RING-finger (Real 40.7 8.9 0.00019 27.1 -0.1 30 430-462 1-30 (45)
202 PF13913 zf-C2HC_2: zinc-finge 40.4 14 0.0003 25.0 0.9 14 555-568 1-14 (25)
203 PF09947 DUF2180: Uncharacteri 40.2 14 0.00029 31.3 0.9 54 430-484 2-66 (68)
204 PF01428 zf-AN1: AN1-like Zinc 40.1 17 0.00037 27.4 1.4 23 434-459 6-28 (43)
205 PRK04023 DNA polymerase II lar 39.9 20 0.00042 43.8 2.5 43 427-483 625-672 (1121)
206 PF07174 FAP: Fibronectin-atta 39.8 4E+02 0.0087 28.4 11.6 36 164-199 109-148 (297)
207 TIGR01562 FdhE formate dehydro 39.8 25 0.00054 37.5 3.1 57 428-485 184-263 (305)
208 PF08271 TF_Zn_Ribbon: TFIIB z 39.8 17 0.00037 27.3 1.4 25 430-454 2-29 (43)
209 PF03107 C1_2: C1 domain; Int 39.7 23 0.0005 24.7 1.9 28 430-458 2-29 (30)
210 TIGR02605 CxxC_CxxC_SSSS putat 39.3 12 0.00026 28.9 0.5 14 430-443 7-20 (52)
211 KOG3836 HLH transcription fact 39.1 15 0.00032 42.5 1.2 59 258-317 404-462 (605)
212 KOG4672 Uncharacterized conser 38.2 2.2E+02 0.0048 31.9 9.8 8 263-270 428-435 (487)
213 KOG1356 Putative transcription 38.2 15 0.00032 43.9 1.1 43 419-463 218-262 (889)
214 KOG1315 Predicted DHHC-type Zn 37.9 15 0.00033 39.2 1.1 27 424-452 105-131 (307)
215 PF01286 XPA_N: XPA protein N- 37.1 21 0.00046 26.2 1.4 10 472-481 22-31 (34)
216 COG0675 Transposase and inacti 37.1 21 0.00046 36.3 2.0 24 428-454 309-332 (364)
217 COG5574 PEX10 RING-finger-cont 36.9 10 0.00023 39.6 -0.3 45 429-483 216-260 (271)
218 TIGR00100 hypA hydrogenase nic 36.7 17 0.00036 33.2 1.0 25 428-452 70-94 (115)
219 COG1996 RPC10 DNA-directed RNA 36.4 16 0.00035 28.9 0.8 24 429-452 7-32 (49)
220 PF01690 PLRV_ORF5: Potato lea 36.0 30 0.00064 39.0 3.0 22 205-226 119-140 (465)
221 smart00659 RPOLCX RNA polymera 35.9 20 0.00043 27.6 1.2 23 430-452 4-27 (44)
222 KOG1829 Uncharacterized conser 35.5 38 0.00083 39.2 3.8 59 429-487 341-406 (580)
223 KOG0917 Uncharacterized conser 35.5 2.5E+02 0.0054 30.0 9.3 29 23-53 169-197 (338)
224 PRK15319 AIDA autotransporter- 35.4 63 0.0014 42.1 5.9 13 232-244 1805-1817(2039)
225 COG5273 Uncharacterized protei 35.1 18 0.00039 38.5 1.2 24 428-453 109-132 (309)
226 PRK11595 DNA utilization prote 34.6 11 0.00024 37.8 -0.5 31 429-461 21-57 (227)
227 KOG2462 C2H2-type Zn-finger pr 33.9 17 0.00038 38.2 0.8 56 428-485 187-254 (279)
228 PF04981 NMD3: NMD3 family ; 33.9 18 0.0004 36.6 0.9 32 453-484 14-45 (236)
229 KOG2375 Protein interacting wi 33.5 6.3E+02 0.014 30.6 13.2 26 106-131 609-634 (756)
230 KOG0823 Predicted E3 ubiquitin 32.6 9.1 0.0002 39.2 -1.5 49 428-485 47-95 (230)
231 PF10367 Vps39_2: Vacuolar sor 32.4 33 0.00072 29.5 2.2 31 428-460 78-108 (109)
232 PF01155 HypA: Hydrogenase exp 32.4 14 0.00031 33.5 -0.1 26 428-453 70-95 (113)
233 KOG2505 Ankyrin repeat protein 31.7 16 0.00036 41.3 0.2 38 257-294 437-474 (591)
234 KOG3609 Receptor-activated Ca2 31.0 21 0.00046 42.6 0.9 53 256-308 31-87 (822)
235 KOG0917 Uncharacterized conser 30.8 2.7E+02 0.0059 29.7 8.7 14 30-43 187-200 (338)
236 TIGR01628 PABP-1234 polyadenyl 30.6 4E+02 0.0088 30.1 11.0 8 187-194 508-515 (562)
237 PF04423 Rad50_zn_hook: Rad50 30.4 18 0.00038 28.4 0.1 10 558-567 22-31 (54)
238 PRK00420 hypothetical protein; 30.4 32 0.00069 31.7 1.7 26 428-453 23-49 (112)
239 smart00661 RPOL9 RNA polymeras 30.3 36 0.00078 26.0 1.8 10 444-453 20-29 (52)
240 PF01927 Mut7-C: Mut7-C RNAse 30.0 34 0.00073 32.3 1.9 13 427-439 90-102 (147)
241 PF09332 Mcm10: Mcm10 replicat 29.8 17 0.00038 39.3 -0.0 51 428-484 252-313 (344)
242 PF03276 Gag_spuma: Spumavirus 29.6 2.2E+02 0.0048 32.9 8.4 34 281-317 341-378 (582)
243 PRK00564 hypA hydrogenase nick 29.4 26 0.00056 32.1 1.0 25 428-452 71-96 (117)
244 COG5151 SSL1 RNA polymerase II 29.3 26 0.00057 37.6 1.2 41 420-460 354-404 (421)
245 smart00834 CxxC_CXXC_SSSS Puta 29.3 23 0.00049 25.7 0.5 13 430-442 7-19 (41)
246 PF06128 Shigella_OspC: Shigel 29.2 26 0.00055 36.4 1.0 49 260-308 227-279 (284)
247 COG1997 RPL43A Ribosomal prote 29.2 31 0.00068 30.5 1.4 29 428-457 35-66 (89)
248 PF10497 zf-4CXXC_R1: Zinc-fin 29.1 18 0.00039 32.7 -0.0 54 428-483 7-70 (105)
249 PF13901 DUF4206: Domain of un 27.8 56 0.0012 32.6 3.1 43 446-488 2-49 (202)
250 KOG4323 Polycomb-like PHD Zn-f 27.5 28 0.0006 39.2 1.0 54 429-482 169-223 (464)
251 PF14353 CpXC: CpXC protein 27.4 32 0.00069 31.4 1.2 25 430-454 3-48 (128)
252 COG5178 PRP8 U5 snRNP spliceos 26.9 50 0.0011 41.2 2.9 9 220-228 300-308 (2365)
253 cd02340 ZZ_NBR1_like Zinc fing 26.8 32 0.00069 26.2 1.0 30 430-461 2-32 (43)
254 PF09889 DUF2116: Uncharacteri 26.5 39 0.00085 27.7 1.5 30 444-489 3-33 (59)
255 PF09723 Zn-ribbon_8: Zinc rib 26.4 26 0.00056 26.4 0.4 9 431-439 8-16 (42)
256 PRK12380 hydrogenase nickel in 26.0 32 0.00069 31.3 1.0 25 428-452 70-94 (113)
257 TIGR01384 TFS_arch transcripti 25.9 39 0.00084 29.7 1.5 23 430-452 2-24 (104)
258 PF10263 SprT-like: SprT-like 25.9 34 0.00074 31.8 1.2 27 428-454 123-153 (157)
259 KOG0129 Predicted RNA-binding 25.4 38 0.00083 38.4 1.6 42 416-461 446-491 (520)
260 PF00097 zf-C3HC4: Zinc finger 25.2 25 0.00055 25.4 0.2 30 431-463 1-30 (41)
261 PF04216 FdhE: Protein involve 24.8 26 0.00057 36.5 0.2 54 429-482 173-246 (290)
262 smart00531 TFIIE Transcription 24.8 39 0.00084 31.9 1.3 27 428-454 99-133 (147)
263 cd02249 ZZ Zinc finger, ZZ typ 24.7 33 0.00072 26.1 0.7 30 430-461 2-32 (46)
264 PF00569 ZZ: Zinc finger, ZZ t 24.5 25 0.00053 26.9 -0.0 23 428-451 4-26 (46)
265 COG0498 ThrC Threonine synthas 24.5 28 0.0006 38.7 0.3 27 428-454 5-31 (411)
266 PRK03824 hypA hydrogenase nick 24.4 35 0.00076 32.0 1.0 14 428-441 70-83 (135)
267 KOG3623 Homeobox transcription 24.3 15 0.00032 43.3 -1.8 56 428-486 240-321 (1007)
268 COG1198 PriA Primosomal protei 24.2 42 0.0009 40.0 1.7 83 447-534 438-520 (730)
269 COG2607 Predicted ATPase (AAA+ 24.1 15 0.00033 38.5 -1.7 23 220-242 87-109 (287)
270 PF11781 RRN7: RNA polymerase 24.1 46 0.00099 24.6 1.3 26 428-453 8-34 (36)
271 PF14803 Nudix_N_2: Nudix N-te 23.9 58 0.0013 23.8 1.8 13 469-481 17-29 (34)
272 cd02341 ZZ_ZZZ3 Zinc finger, Z 23.7 36 0.00079 26.6 0.8 30 430-460 2-34 (48)
273 COG1773 Rubredoxin [Energy pro 23.6 37 0.0008 27.6 0.8 12 443-454 2-13 (55)
274 PF14835 zf-RING_6: zf-RING of 23.5 45 0.00097 28.0 1.3 29 429-461 8-37 (65)
275 smart00291 ZnF_ZZ Zinc-binding 23.5 46 0.001 25.1 1.3 30 428-459 4-34 (44)
276 PF15616 TerY-C: TerY-C metal 23.4 38 0.00082 32.0 1.0 25 428-457 77-101 (131)
277 COG1439 Predicted nucleic acid 23.2 37 0.0008 33.7 0.9 22 429-452 140-161 (177)
278 TIGR01031 rpmF_bact ribosomal 23.2 54 0.0012 26.4 1.7 30 419-451 15-46 (55)
279 PF07191 zinc-ribbons_6: zinc- 23.1 52 0.0011 28.0 1.6 53 430-484 3-60 (70)
280 KOG2177 Predicted E3 ubiquitin 22.9 17 0.00038 35.2 -1.4 33 428-464 13-45 (386)
281 PRK12496 hypothetical protein; 22.5 47 0.001 32.2 1.5 23 430-452 129-151 (164)
282 KOG1812 Predicted E3 ubiquitin 22.2 37 0.00081 37.2 0.8 32 428-460 306-339 (384)
283 KOG0153 Predicted RNA-binding 21.9 16 0.00034 39.6 -2.0 16 427-442 40-55 (377)
284 PF03875 Statherin: Statherin; 21.8 84 0.0018 23.8 2.3 17 104-120 20-36 (42)
285 PF04438 zf-HIT: HIT zinc fing 21.7 44 0.00096 23.7 0.8 23 429-456 3-25 (30)
286 PRK03681 hypA hydrogenase nick 21.4 44 0.00095 30.5 1.0 25 428-452 70-95 (114)
287 PRK14873 primosome assembly pr 21.4 51 0.0011 38.8 1.7 23 430-452 394-418 (665)
288 PRK06260 threonine synthase; V 21.3 53 0.0011 35.8 1.7 25 429-453 4-28 (397)
289 COG5222 Uncharacterized conser 21.2 55 0.0012 35.1 1.7 45 428-482 274-318 (427)
290 PF07776 zf-AD: Zinc-finger as 21.1 1.1E+02 0.0023 24.0 3.0 17 471-487 42-58 (75)
291 KOG2593 Transcription initiati 21.0 46 0.001 37.1 1.2 33 428-460 128-169 (436)
292 PTZ00255 60S ribosomal protein 21.0 48 0.001 29.5 1.1 32 428-459 36-69 (90)
293 cd02342 ZZ_UBA_plant Zinc fing 20.9 45 0.00097 25.9 0.7 29 430-459 2-31 (43)
294 PF03276 Gag_spuma: Spumavirus 20.6 4.6E+02 0.01 30.5 8.7 19 283-304 321-339 (582)
295 cd07153 Fur_like Ferric uptake 20.6 47 0.001 29.2 1.0 15 445-459 74-88 (116)
296 PF07503 zf-HYPF: HypF finger; 20.6 26 0.00057 25.8 -0.5 16 431-446 2-18 (35)
297 PF06221 zf-C2HC5: Putative zi 20.5 59 0.0013 26.6 1.4 18 440-457 14-31 (57)
298 PF02591 DUF164: Putative zinc 20.2 53 0.0011 26.0 1.1 26 429-454 23-56 (56)
299 PHA00732 hypothetical protein 20.2 70 0.0015 27.5 1.9 11 430-440 3-13 (79)
300 smart00734 ZnF_Rad18 Rad18-lik 20.1 49 0.0011 22.6 0.7 11 557-567 2-12 (26)
301 PRK12366 replication factor A; 20.1 46 0.001 38.8 1.0 26 428-453 532-557 (637)
302 smart00504 Ubox Modified RING 20.0 48 0.001 25.9 0.8 30 430-463 3-32 (63)
No 1
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.73 E-value=1.3e-18 Score=142.47 Aligned_cols=66 Identities=48% Similarity=1.177 Sum_probs=48.7
Q ss_pred CCCccCcCCccccccCccccCccccccccccCceeccCCCCCcEecc--CCCCCCceeeccccHHHHH
Q 008295 420 DHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALT--ADANAQPVRVCDRCMAEVT 485 (571)
Q Consensus 420 ~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp--~~~~~~pvRVC~~Cy~~l~ 485 (571)
++|++|+++..|+.|+++|++++||||||.||+|||++|+.+++.++ .....+++|||+.|+..+.
T Consensus 1 ~~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 1 PHWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp --SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CCcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 47999999999999999999999999999999999999999999887 5566789999999998764
No 2
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=99.53 E-value=1.6e-15 Score=156.10 Aligned_cols=71 Identities=41% Similarity=1.025 Sum_probs=64.1
Q ss_pred CCCCCCCCccCcCCccccccCc-cccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHH
Q 008295 415 GNEEKDHWVPDEAVSKCTACGT-DFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (571)
Q Consensus 415 ~~~~~~~WvpD~~~~~C~~C~~-~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (571)
....+.+|+||.++.+|+.|++ .|+++.||||||+||+|||..|+++++.|+.. ..+++|||+.||.++..
T Consensus 155 ~~~~~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~-~~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 155 SNNSAAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNL-STKPIRVCDICFEELEK 226 (288)
T ss_pred CCCcCCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCccccccc-CCCCceecHHHHHHHhc
Confidence 3456789999999999999999 99999999999999999999999999888764 46799999999999875
No 4
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.3e-14 Score=160.78 Aligned_cols=69 Identities=38% Similarity=0.899 Sum_probs=62.7
Q ss_pred CCCCCCccCcCCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHHhh
Q 008295 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRL 488 (571)
Q Consensus 417 ~~~~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~r~ 488 (571)
++.+.|++. ..|+.|.++|++++||||||.||+|||..|+.+.+.|+..+..++||||+.||+.+....
T Consensus 157 ~~~pdW~D~---~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C~E~l~~~s 225 (634)
T KOG1818|consen 157 ETAPDWIDS---EECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSCYELLTRAS 225 (634)
T ss_pred cCCcccccc---cccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhhHHHhhhcc
Confidence 456789974 489999999999999999999999999999999999999999999999999999876543
No 5
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=99.44 E-value=1.4e-14 Score=153.71 Aligned_cols=98 Identities=28% Similarity=0.642 Sum_probs=69.1
Q ss_pred CCCCccCcCCccccccCccccCccccccccccCceeccCCCCCcE-----ecc-----------------CCCCCCceee
Q 008295 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI-----ALT-----------------ADANAQPVRV 476 (571)
Q Consensus 419 ~~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i-----~Lp-----------------~~~~~~pvRV 476 (571)
...|+.|.++..|..|..+|++++||||||+||+|+|.+|+.+-- .|. -+....++|+
T Consensus 171 vVpW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRl 250 (505)
T KOG1842|consen 171 VVPWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRL 250 (505)
T ss_pred cccccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHH
Confidence 468999999999999999999999999999999999999987421 000 0112245799
Q ss_pred ccccHHHHHHhhhhhhhhcCCcc-ccchHHHHHHHHHHHHhh
Q 008295 477 CDRCMAEVTQRLSNAKEMANKPA-LQSHEDLARKLQEEMEKN 517 (571)
Q Consensus 477 C~~Cy~~l~~r~~sa~e~~sk~~-lqs~e~laRkL~e~l~~~ 517 (571)
|..|...|..|.....+....+. ++.+ +..|.+.+++...
T Consensus 251 C~hCl~~L~~R~~~~d~r~~~p~ivq~Y-e~mq~~~k~v~~~ 291 (505)
T KOG1842|consen 251 CMHCLDNLFRRKLQQDEREPSPGIVQHY-EHLQVFRKEVDNL 291 (505)
T ss_pred HHHHHHHHHHHHHhhhhccCCchHHHHH-HHHHHHHHHHHhh
Confidence 99999998776655544433333 4444 3345555555443
No 6
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.44 E-value=5e-14 Score=156.37 Aligned_cols=68 Identities=32% Similarity=0.770 Sum_probs=53.9
Q ss_pred CCCCCccCcC-CccccccCccccCc-----cccccccccCceeccCCCCCcEecc-----CCCC---CCceeeccccHHH
Q 008295 418 EKDHWVPDEA-VSKCTACGTDFSAF-----VRKHHCRNCGDIFCDKCTHGRIALT-----ADAN---AQPVRVCDRCMAE 483 (571)
Q Consensus 418 ~~~~WvpD~~-~~~C~~C~~~Fsl~-----~RKHHCR~CG~VfC~~CS~~~i~Lp-----~~~~---~~pvRVC~~Cy~~ 483 (571)
..+.|++|++ .+.|+.|++.|+.+ +||||||+||++||..||.+++.++ ..+. ..+.|||+.||++
T Consensus 449 hAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq 528 (1374)
T PTZ00303 449 HNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKE 528 (1374)
T ss_pred cCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHH
Confidence 4689999998 48899999999754 6999999999999999999876432 2221 2356899999976
Q ss_pred HH
Q 008295 484 VT 485 (571)
Q Consensus 484 l~ 485 (571)
+.
T Consensus 529 ~E 530 (1374)
T PTZ00303 529 YE 530 (1374)
T ss_pred HH
Confidence 53
No 7
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=99.38 E-value=1.4e-13 Score=108.36 Aligned_cols=55 Identities=51% Similarity=1.159 Sum_probs=50.6
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
+..|..|++.|+++.||||||+||++||..|+.+++.++.....+++|||..|+.
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcccCCCccEeChHHhC
Confidence 5689999999999999999999999999999999998887556789999999985
No 8
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=99.34 E-value=2e-13 Score=146.26 Aligned_cols=64 Identities=42% Similarity=1.039 Sum_probs=60.4
Q ss_pred CCCCccCcCCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeecc-----ccHH
Q 008295 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCD-----RCMA 482 (571)
Q Consensus 419 ~~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~-----~Cy~ 482 (571)
.+-|++|..+..||.|+..|++|+||||||+||.|||.+|+...++|+..+..+.+|||+ .|+.
T Consensus 892 ppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~gl~ka~rvcrpqsnldc~~ 960 (990)
T KOG1819|consen 892 PPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHGLDKAPRVCRPQSNLDCLT 960 (990)
T ss_pred CcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCcccccccCceecCCccccccee
Confidence 456999999999999999999999999999999999999999999999998889999999 7874
No 9
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.10 E-value=1.6e-11 Score=135.51 Aligned_cols=78 Identities=14% Similarity=0.079 Sum_probs=73.1
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccccc-ccccceEEEEeccCCchHHHHHHHcCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd-~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
.|-+.|||||..+. .+|+|.||.+||+||..+ ..+.||||+|+++|+..+|++|+|+||
T Consensus 77 ~g~tlLHWAAiNNr--------------------l~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGA 136 (600)
T KOG0509|consen 77 EGVTLLHWAAINNR--------------------LDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGA 136 (600)
T ss_pred CCccceeHHHHcCc--------------------HHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCC
Confidence 67789999999987 999999999999999998 478999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
| +.+.|.+|.++||+|+.-
T Consensus 137 d-pt~~D~~G~~~lHla~~~ 155 (600)
T KOG0509|consen 137 D-PTLKDKQGLTPLHLAAQF 155 (600)
T ss_pred C-CceecCCCCcHHHHHHHh
Confidence 9 999999999999999665
No 10
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=99.06 E-value=4.1e-11 Score=138.09 Aligned_cols=62 Identities=32% Similarity=0.770 Sum_probs=53.9
Q ss_pred CCCCCccCcCCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeecccc
Q 008295 418 EKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC 480 (571)
Q Consensus 418 ~~~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~C 480 (571)
..+.|++|.++..||.|..+|++++||||||.||+|||..||..+..|..- ...--|||..|
T Consensus 547 kqP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl-~e~~~rv~nV~ 608 (1287)
T KOG1841|consen 547 KQPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYL-SESEGRVSNVD 608 (1287)
T ss_pred CCCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhc-Ccccccccccc
Confidence 468999999999999999999999999999999999999999998887642 23445788877
No 11
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.3e-10 Score=110.90 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=68.4
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccC-CcccccccccccceEEEEeccCCchHHHHHHHc
Q 008295 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKV-DTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI 305 (571)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~a-gA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~ 305 (571)
-..|||+||+|| ..|+.+||+.||-. |||+|.++..|+|+||+||-+|..+|+.+||++
T Consensus 69 DdaGWtPlhia~--------------------s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ 128 (226)
T KOG4412|consen 69 DDAGWTPLHIAA--------------------SNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEK 128 (226)
T ss_pred cccCCchhhhhh--------------------hcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhc
Confidence 456777777744 44568999999988 999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCceeeeecc
Q 008295 306 GLDGIRMLDPNTSRTLRIYPL 326 (571)
Q Consensus 306 Gadg~~~lD~~gnn~LhiApL 326 (571)
|+. +++.|+.|.|+||.|.-
T Consensus 129 ga~-i~~kD~~~qtplHRAAa 148 (226)
T KOG4412|consen 129 GAL-IRIKDKQGQTPLHRAAA 148 (226)
T ss_pred CCC-CcccccccCchhHHHHh
Confidence 999 99999999999998743
No 12
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=98.95 E-value=5.1e-11 Score=93.86 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=33.4
Q ss_pred cccCC-cccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008295 269 VPKVD-THQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (571)
Q Consensus 269 Ll~ag-A~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiA 324 (571)
||++| +++|.+|..|.||||+|++.|+.++|++|++.|+| +++.|.+|.|+||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d-~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD-PNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC-CCCCcCCCCCHHHhC
Confidence 78889 99999999999999999999999999999999999 999999999999986
No 13
>PHA02859 ankyrin repeat protein; Provisional
Probab=98.84 E-value=2.8e-10 Score=111.50 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=30.2
Q ss_pred hhHhhhcccCCccccccc-ccccceEEEEecc---CCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008295 263 SKIVRAVPKVDTHQDVKS-GVQKFRVKLLAES---GGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd-~~~kTpLHlaa~~---g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiA 324 (571)
.+||+.||++||++|.++ ..|+||||+|+.. ++.+++.+|+++|++ ++..|..|.|+||+|
T Consensus 66 ~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a 130 (209)
T PHA02859 66 VEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMY 130 (209)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHH
Confidence 455555555555555554 2455555554322 234455555555555 555555555555543
No 14
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=98.82 E-value=1e-09 Score=121.49 Aligned_cols=108 Identities=11% Similarity=0.109 Sum_probs=58.3
Q ss_pred CCccccccCcCCCCCCCcccccccc----------CCcccCCCCcC-C--CCccCCCchhHhhhcccCCccccccccccc
Q 008295 218 GGKLEPYGARGTVPKSSNSTLFDDY----------GRSISFPSAKD-S--RSSVGSGSSKIVRAVPKVDTHQDVKSGVQK 284 (571)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~a~~~~~----------~~~~~~~~~~~-~--~~~~~~g~~~iVr~Ll~agA~vn~kd~~~k 284 (571)
|+-+.--|. -.+.|+|||||+.+. |.-++.-.... + --+|..|+..+|-.||..||++|.+|..|.
T Consensus 101 gadvn~~gG-~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~gr 179 (600)
T KOG0509|consen 101 GADVNAIGG-VLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGR 179 (600)
T ss_pred CCCccccCC-CCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCC
Confidence 555555454 578999999999876 11111111110 0 023444455555555555555555555555
Q ss_pred ceEEEEeccCCchHHHHHHHcCCCCCcccC-CCCCceeeeeccc
Q 008295 285 FRVKLLAESGGQSTMDVLCQIGLDGIRMLD-PNTSRTLRIYPLE 327 (571)
Q Consensus 285 TpLHlaa~~g~~~iv~vLlq~Gadg~~~lD-~~gnn~LhiApLe 327 (571)
||||+||++|+...+..|++.|++ +++.| .+|+|+||.|.+.
T Consensus 180 TpLmwAaykg~~~~v~~LL~f~a~-~~~~d~~~g~TpLHwa~~~ 222 (600)
T KOG0509|consen 180 TPLMWAAYKGFALFVRRLLKFGAS-LLLTDDNHGNTPLHWAVVG 222 (600)
T ss_pred CHHHHHHHhcccHHHHHHHHhccc-ccccccccCCchHHHHHhc
Confidence 555555555555545555666555 55554 5566666665554
No 15
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=98.78 E-value=1.9e-09 Score=110.65 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=72.3
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
.+|-.+|||||.. |+..||+.||..||+||..+.--.|+|||||..||.+||..|++..+
T Consensus 32 dhgfsplhwaake--------------------gh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~ka 91 (448)
T KOG0195|consen 32 DHGFSPLHWAAKE--------------------GHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKA 91 (448)
T ss_pred ccCcchhhhhhhc--------------------ccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhc
Confidence 4667899997654 45999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
| +++++.+|+++||.|..=
T Consensus 92 d-vnavnehgntplhyacfw 110 (448)
T KOG0195|consen 92 D-VNAVNEHGNTPLHYACFW 110 (448)
T ss_pred c-cchhhccCCCchhhhhhh
Confidence 9 999999999999998654
No 16
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.4e-09 Score=102.86 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=65.1
Q ss_pred ccCCCchhHhhhcc-cCCcccccccccccceEEEEeccCCchHHHHHHHc-CCCCCcccCCCCCceeeeecccc
Q 008295 257 SVGSGSSKIVRAVP-KVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI-GLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll-~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~-Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
++.-|+.+||..|| ..+..+|.||-.|+||||||+-.|..++|++|+.. |+| +++++..|.|+||.|.-+.
T Consensus 45 a~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAagK~ 117 (226)
T KOG4412|consen 45 ACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD-VNATTNGGQTCLHYAAGKG 117 (226)
T ss_pred eeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCC-cceecCCCcceehhhhcCC
Confidence 34557899999999 88889999999999999999999999999999999 999 9999999999999997664
No 17
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.75 E-value=4.1e-09 Score=113.68 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=60.9
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeec
Q 008295 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYP 325 (571)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiAp 325 (571)
|+.+||+.|+++|||.++.|.+|.|-||||+++||.+|++.|++.||| ++..+..|||+||.+.
T Consensus 128 G~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD-vn~ks~kGNTALH~ca 191 (615)
T KOG0508|consen 128 GHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGAD-VNAKSYKGNTALHDCA 191 (615)
T ss_pred chhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCC-cchhcccCchHHHhhh
Confidence 359999999999999999999999999999999999999999999999 9999999999999975
No 18
>PHA02743 Viral ankyrin protein; Provisional
Probab=98.75 E-value=1.1e-09 Score=103.61 Aligned_cols=82 Identities=9% Similarity=0.174 Sum_probs=68.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccccc-ccccceEEEEeccCCchHHHHHHH-c
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQ-I 305 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd-~~~kTpLHlaa~~g~~~iv~vLlq-~ 305 (571)
..|.|+||||+..+. .+..++|+.|+..||++|.+| ..|+|+||+|+..|+.++++.|++ .
T Consensus 55 ~~g~t~Lh~Aa~~g~-----------------~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~ 117 (166)
T PHA02743 55 HHGRQCTHMVAWYDR-----------------ANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQL 117 (166)
T ss_pred CCCCcHHHHHHHhCc-----------------cCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcc
Confidence 356899999987654 112356899999999999998 589999999999999999999994 8
Q ss_pred CCCCCcccCCCCCceeeeeccc
Q 008295 306 GLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 306 Gadg~~~lD~~gnn~LhiApLe 327 (571)
|++ ++..|..|.++||+|...
T Consensus 118 gad-~~~~d~~g~tpL~~A~~~ 138 (166)
T PHA02743 118 GVN-LGAINYQHETAYHIAYKM 138 (166)
T ss_pred CCC-ccCcCCCCCCHHHHHHHc
Confidence 999 889999999999998544
No 19
>PHA02878 ankyrin repeat protein; Provisional
Probab=98.73 E-value=1.6e-09 Score=117.54 Aligned_cols=76 Identities=7% Similarity=0.036 Sum_probs=67.2
Q ss_pred CCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCC
Q 008295 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDG 309 (571)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg 309 (571)
|.|+||+|+..+ +.++|+.||+.||++|.+|..|+||||+|++.|+.++++.|++.|++
T Consensus 168 g~tpLh~A~~~~--------------------~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~- 226 (477)
T PHA02878 168 GNTALHYATENK--------------------DQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS- 226 (477)
T ss_pred CCCHHHHHHhCC--------------------CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-
Confidence 789999987655 48999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCceeeeecc
Q 008295 310 IRMLDPNTSRTLRIYPL 326 (571)
Q Consensus 310 ~~~lD~~gnn~LhiApL 326 (571)
++..|..|.|+||+|..
T Consensus 227 in~~d~~g~TpLh~A~~ 243 (477)
T PHA02878 227 TDARDKCGNTPLHISVG 243 (477)
T ss_pred CCCCCCCCCCHHHHHHH
Confidence 88999999999998853
No 20
>PHA02736 Viral ankyrin protein; Provisional
Probab=98.71 E-value=2e-09 Score=99.44 Aligned_cols=63 Identities=8% Similarity=0.084 Sum_probs=57.6
Q ss_pred hHhhhcccCCccccccc-ccccceEEEEeccCCchHHHHHHH-cCCCCCcccCCCCCceeeeeccc
Q 008295 264 KIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQ-IGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 264 ~iVr~Ll~agA~vn~kd-~~~kTpLHlaa~~g~~~iv~vLlq-~Gadg~~~lD~~gnn~LhiApLe 327 (571)
++|+.|+..||++|.+| ..|+|+||+|++.|+.++++.|++ .|++ +++.|..|.|+||+|...
T Consensus 72 e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~ 136 (154)
T PHA02736 72 EKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKTPYYVACER 136 (154)
T ss_pred HHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHc
Confidence 67899999999999998 589999999999999999999997 5999 999999999999998543
No 21
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=98.68 E-value=1.9e-09 Score=90.29 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=28.6
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
.++|+.|++.|++++. |.|+||+|+..|+.++++.|++.|++ ++..|.+|.|+||+|...
T Consensus 10 ~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 69 (89)
T PF12796_consen 10 LEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAEN 69 (89)
T ss_dssp HHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHT
T ss_pred HHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHc
Confidence 4445555544444443 44455555555444455555555544 444444455555444433
No 22
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=98.68 E-value=4.6e-09 Score=101.42 Aligned_cols=79 Identities=10% Similarity=0.039 Sum_probs=69.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
.++.|+||-|||.+. .+||+.||+.||+++++...|+||||-|+.=.+.+++..||+.|+
T Consensus 95 ~D~YTpLHRAaYn~h--------------------~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhga 154 (228)
T KOG0512|consen 95 EDEYTPLHRAAYNGH--------------------LDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGA 154 (228)
T ss_pred cccccHHHHHHhcCc--------------------hHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccC
Confidence 357789999888876 899999999999999999999999999999998999999999999
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
| +++.-.-.-++||+++--
T Consensus 155 D-VnA~t~g~ltpLhlaa~~ 173 (228)
T KOG0512|consen 155 D-VNAQTKGLLTPLHLAAGN 173 (228)
T ss_pred c-ccccccccchhhHHhhcc
Confidence 9 988888888999997443
No 23
>PHA02791 ankyrin-like protein; Provisional
Probab=98.67 E-value=2.9e-09 Score=109.97 Aligned_cols=66 Identities=9% Similarity=0.062 Sum_probs=48.2
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCC-ceeeeeccc
Q 008295 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTS-RTLRIYPLE 327 (571)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gn-n~LhiApLe 327 (571)
|+.+||+.||..||++|.+|..|+||||+|++.|+.+++++|++.|++ ++..+..|. ++||+|...
T Consensus 72 g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~ 138 (284)
T PHA02791 72 EDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVML 138 (284)
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHc
Confidence 347777777777777777777777777777777777777777777777 666666663 677776554
No 24
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=98.67 E-value=4.4e-09 Score=124.13 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=66.3
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
++..|+.++|+.||.+||+|+.+|..|+||||.|+..|+.+|+.+|+|+||+ +++.|.++.|+||||...
T Consensus 547 A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~-vna~d~~g~TpL~iA~~l 616 (1143)
T KOG4177|consen 547 AVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS-VNAADLDGFTPLHIAVRL 616 (1143)
T ss_pred HHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC-CCcccccCcchhHHHHHh
Confidence 5667789999999999999999999999999999999999999999999999 999999999999998655
No 25
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.66 E-value=4.4e-09 Score=119.04 Aligned_cols=104 Identities=14% Similarity=0.050 Sum_probs=85.6
Q ss_pred CCCCCCCcccccccc----------CCcccCCCCcCCC---CccCCCchhHhhhccc-CC-cccccccccccceEEEEec
Q 008295 228 GTVPKSSNSTLFDDY----------GRSISFPSAKDSR---SSVGSGSSKIVRAVPK-VD-THQDVKSGVQKFRVKLLAE 292 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~----------~~~~~~~~~~~~~---~~~~~g~~~iVr~Ll~-ag-A~vn~kd~~~kTpLHlaa~ 292 (571)
-+|.|+||.||.+++ |.+|.+-+...-+ -+|..|....||.||+ -| +..|..|.+|.||||+|++
T Consensus 271 ~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~ 350 (929)
T KOG0510|consen 271 NDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAK 350 (929)
T ss_pred ccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhh
Confidence 357899999998875 6777777754322 4788899999999998 44 4788999999999999999
Q ss_pred cCCchHHHHHHHcCCCCCc--ccCCCCCceeeeeccccccc
Q 008295 293 SGGQSTMDVLCQIGLDGIR--MLDPNTSRTLRIYPLENITR 331 (571)
Q Consensus 293 ~g~~~iv~vLlq~Gadg~~--~lD~~gnn~LhiApLe~Itr 331 (571)
.||..++++|++.||+-.+ -.|.+|+|+||+|.++..+.
T Consensus 351 ~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~ 391 (929)
T KOG0510|consen 351 SGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTS 391 (929)
T ss_pred cCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHH
Confidence 9999999999999999333 34999999999999986443
No 26
>PHA02884 ankyrin repeat protein; Provisional
Probab=98.66 E-value=3.4e-09 Score=110.37 Aligned_cols=77 Identities=8% Similarity=0.090 Sum_probs=68.0
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccccc-ccccceEEEEeccCCchHHHHHHHcCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd-~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
.|.|+||+|+..+. .++|+.|+++||++|.++ ..|.||||+|+..|+.++++.|+++|+
T Consensus 69 ~g~TpLh~Aa~~~~--------------------~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GA 128 (300)
T PHA02884 69 SKTNPLIYAIDCDN--------------------DDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGA 128 (300)
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 46789999876554 899999999999999874 579999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecc
Q 008295 308 DGIRMLDPNTSRTLRIYPL 326 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApL 326 (571)
+ +++.|..|.|+||+|..
T Consensus 129 d-in~kd~~G~TpL~~A~~ 146 (300)
T PHA02884 129 D-INIQTNDMVTPIELALM 146 (300)
T ss_pred C-CCCCCCCCCCHHHHHHH
Confidence 9 99999999999999854
No 27
>PHA02741 hypothetical protein; Provisional
Probab=98.64 E-value=3.6e-09 Score=99.95 Aligned_cols=82 Identities=9% Similarity=0.114 Sum_probs=67.0
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccc-cccceEEEEeccCCchHHHHHHH-cC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSG-VQKFRVKLLAESGGQSTMDVLCQ-IG 306 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~-~~kTpLHlaa~~g~~~iv~vLlq-~G 306 (571)
.|.|+||+|+..+. . .-..+|++.|+.+||++|.++. .|+||||+|++.++.++++.|++ .|
T Consensus 59 ~g~T~Lh~A~~~g~-------------~---~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g 122 (169)
T PHA02741 59 AGQMCIHIAAEKHE-------------A---QLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPG 122 (169)
T ss_pred CCCcHHHHHHHcCC-------------h---HHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 45677888776442 0 0015899999999999999985 89999999999999999999997 69
Q ss_pred CCCCcccCCCCCceeeeeccc
Q 008295 307 LDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 307 adg~~~lD~~gnn~LhiApLe 327 (571)
++ +++.|..|.|+||+|...
T Consensus 123 ~~-~~~~n~~g~tpL~~A~~~ 142 (169)
T PHA02741 123 ID-LHFCNADNKSPFELAIDN 142 (169)
T ss_pred CC-CCcCCCCCCCHHHHHHHC
Confidence 99 999999999999998443
No 28
>PHA02875 ankyrin repeat protein; Provisional
Probab=98.64 E-value=3.8e-09 Score=111.92 Aligned_cols=67 Identities=12% Similarity=0.049 Sum_probs=57.7
Q ss_pred CCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 260 ~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
.|+.+||+.|+++||++|.++..|.||||+|+..|+.++++.|+++|++ +++.|..|.|+||+|...
T Consensus 112 ~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~ 178 (413)
T PHA02875 112 LKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAK 178 (413)
T ss_pred hCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHc
Confidence 3458899999999999988888889999999988888889999999988 888888899999888665
No 29
>PHA02791 ankyrin-like protein; Provisional
Probab=98.64 E-value=3.9e-09 Score=109.03 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=70.9
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .++|+.||.+||++|.++ ++||||+|++.|+.+++++|++.|+
T Consensus 28 ~~G~TpLh~Aa~~g~--------------------~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Ga 85 (284)
T PHA02791 28 VHGHSALYYAIADNN--------------------VRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGM 85 (284)
T ss_pred CCCCcHHHHHHHcCC--------------------HHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCC
Confidence 458899999877665 999999999999999876 6899999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe~ 328 (571)
+ ++..|..|.|+||+|....
T Consensus 86 d-vn~~d~~G~TpLh~Aa~~g 105 (284)
T PHA02791 86 D-DSQFDDKGNTALYYAVDSG 105 (284)
T ss_pred C-CCCCCCCCCCHHHHHHHcC
Confidence 9 9999999999999997764
No 30
>PHA02859 ankyrin repeat protein; Provisional
Probab=98.63 E-value=4.5e-09 Score=103.03 Aligned_cols=79 Identities=10% Similarity=0.041 Sum_probs=60.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEec--cCCchHHHHHHHc
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAE--SGGQSTMDVLCQI 305 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~--~g~~~iv~vLlq~ 305 (571)
+.|.|+||+|+...- .++.+||++||++||++|.+|..|+|+||+|+. .++.+++++|++.
T Consensus 85 ~~g~TpLh~a~~~~~-----------------~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~ 147 (209)
T PHA02859 85 DNNLSALHHYLSFNK-----------------NVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS 147 (209)
T ss_pred CCCCCHHHHHHHhCc-----------------cccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence 467899999875321 134788888888888888888888888888764 3567888888888
Q ss_pred CCCCCcccCCCCCceeeee
Q 008295 306 GLDGIRMLDPNTSRTLRIY 324 (571)
Q Consensus 306 Gadg~~~lD~~gnn~LhiA 324 (571)
|++ ++..|.+|+|+||++
T Consensus 148 gad-in~~d~~g~t~Lh~~ 165 (209)
T PHA02859 148 GVS-FLNKDFDNNNILYSY 165 (209)
T ss_pred CCC-cccccCCCCcHHHHH
Confidence 888 888888888888864
No 31
>PHA02989 ankyrin repeat protein; Provisional
Probab=98.63 E-value=5.6e-09 Score=114.18 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=66.7
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEecc---CCchHHHHHH
Q 008295 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAES---GGQSTMDVLC 303 (571)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~---g~~~iv~vLl 303 (571)
++.+.|+||+|+...+ .+..|..+||+.||++||++|.+|..|.||||+|+.. |+.+++++|+
T Consensus 66 ~~~~~tpL~~a~~~~~--------------~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll 131 (494)
T PHA02989 66 KGYIETPLCAVLRNRE--------------ITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLL 131 (494)
T ss_pred CCCCCCcHHHHHhccC--------------cchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHH
Confidence 3456799998765543 1224568899999999999999999999999976554 5678899999
Q ss_pred HcCCCCC-cccCCCCCceeeeec
Q 008295 304 QIGLDGI-RMLDPNTSRTLRIYP 325 (571)
Q Consensus 304 q~Gadg~-~~lD~~gnn~LhiAp 325 (571)
+.||| + ++.|..|.|+||+|.
T Consensus 132 ~~Gad-in~~~d~~g~tpLh~a~ 153 (494)
T PHA02989 132 SKGIN-VNDVKNSRGYNLLHMYL 153 (494)
T ss_pred HCCCC-cccccCCCCCCHHHHHH
Confidence 99999 7 788999999999864
No 32
>PHA02795 ankyrin-like protein; Provisional
Probab=98.63 E-value=5e-09 Score=113.99 Aligned_cols=69 Identities=9% Similarity=-0.051 Sum_probs=64.8
Q ss_pred CCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008295 259 GSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 259 ~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
..++.+||+.||.+||++|.+|..|+||||+|++.|+.++++.|++.|++ +++.|..|.|+||+|....
T Consensus 197 ~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd-IN~~d~~G~TpLh~Aa~~g 265 (437)
T PHA02795 197 EPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN-VNAVMSNGYTCLDVAVDRG 265 (437)
T ss_pred hcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcC
Confidence 34568999999999999999999999999999999999999999999999 9999999999999997664
No 33
>PHA03095 ankyrin-like protein; Provisional
Probab=98.60 E-value=8e-09 Score=110.68 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=57.7
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
..+|+.|++.|+++|.+|..|+||||+|++.|+.++++.|++.|+| +++.|.+|.|+||+|...
T Consensus 237 ~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad-~n~~~~~g~tpl~~A~~~ 300 (471)
T PHA03095 237 RSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGAD-INAVSSDGNTPLSLMVRN 300 (471)
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHh
Confidence 4688889999999999999999999999999999999999999999 889999999999998655
No 34
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=98.57 E-value=5.2e-09 Score=87.61 Aligned_cols=57 Identities=16% Similarity=0.273 Sum_probs=49.9
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccC
Q 008295 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLD 314 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD 314 (571)
++..|+.+||+.|+..|+++|.+|..|+|+||+|++.|+.+++++|++.|++ ++..|
T Consensus 33 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~n 89 (89)
T PF12796_consen 33 AAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGAD-VNIRN 89 (89)
T ss_dssp HHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT--TTSS-
T ss_pred HHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcC
Confidence 4567789999999999999999999999999999999999999999999999 65543
No 35
>PHA02741 hypothetical protein; Provisional
Probab=98.55 E-value=8e-09 Score=97.59 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=67.7
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcc------cCCcccccccccccceEEEEeccCC----chH
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVP------KVDTHQDVKSGVQKFRVKLLAESGG----QST 298 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll------~agA~vn~kd~~~kTpLHlaa~~g~----~~i 298 (571)
.|.|+||+|+..+. .+||+.|+ ..|+++|.+|..|+|+||+|+..|+ .++
T Consensus 20 ~g~t~Lh~Aa~~g~--------------------~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~i 79 (169)
T PHA02741 20 EGENFFHEAARCGC--------------------FDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEI 79 (169)
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHH
Confidence 57788998776654 89999874 4579999999999999999999998 478
Q ss_pred HHHHHHcCCCCCcccCC-CCCceeeeecccc
Q 008295 299 MDVLCQIGLDGIRMLDP-NTSRTLRIYPLEN 328 (571)
Q Consensus 299 v~vLlq~Gadg~~~lD~-~gnn~LhiApLe~ 328 (571)
++.|++.|++ ++..|. +|+|+||+|....
T Consensus 80 i~~Ll~~gad-in~~~~~~g~TpLh~A~~~~ 109 (169)
T PHA02741 80 IDHLIELGAD-INAQEMLEGDTALHLAAHRR 109 (169)
T ss_pred HHHHHHcCCC-CCCCCcCCCCCHHHHHHHcC
Confidence 9999999999 888885 9999999986553
No 36
>PHA02874 ankyrin repeat protein; Provisional
Probab=98.55 E-value=1e-08 Score=109.92 Aligned_cols=80 Identities=6% Similarity=0.047 Sum_probs=67.1
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+ +.++|+.|++.||++|.+|..|+||||+|++.|+.+++++|++.|+
T Consensus 122 ~~g~T~Lh~A~~~~--------------------~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~ 181 (434)
T PHA02874 122 AELKTFLHYAIKKG--------------------DLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGA 181 (434)
T ss_pred CCCccHHHHHHHCC--------------------CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCC
Confidence 45678899877554 4888999999999999888889999999999888889999999998
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe~ 328 (571)
+ ++..|..|.|+||+|....
T Consensus 182 ~-~n~~~~~g~tpL~~A~~~g 201 (434)
T PHA02874 182 Y-ANVKDNNGESPLHNAAEYG 201 (434)
T ss_pred C-CCCCCCCCCCHHHHHHHcC
Confidence 8 8888888999998886553
No 37
>PHA03095 ankyrin-like protein; Provisional
Probab=98.55 E-value=1.1e-08 Score=109.55 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=68.9
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccC-CchHHHHHHHcCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG-GQSTMDVLCQIGL 307 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g-~~~iv~vLlq~Ga 307 (571)
.|.|+||+|+.... .++.++|+.|+++||++|.+|..|+||||+|++.| ..+++++|++.|+
T Consensus 46 ~g~t~Lh~a~~~~~-----------------~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga 108 (471)
T PHA03095 46 YGKTPLHLYLHYSS-----------------EKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGA 108 (471)
T ss_pred CCCCHHHHHHHhcC-----------------CChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCC
Confidence 46789999876541 23589999999999999999999999999999999 5899999999999
Q ss_pred CCCcccCCCCCceeeeec
Q 008295 308 DGIRMLDPNTSRTLRIYP 325 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiAp 325 (571)
+ ++..|..|.|+||+|.
T Consensus 109 ~-in~~~~~g~tpLh~a~ 125 (471)
T PHA03095 109 D-VNAKDKVGRTPLHVYL 125 (471)
T ss_pred C-CCCCCCCCCCHHHHHh
Confidence 9 9999999999999986
No 38
>PHA02946 ankyin-like protein; Provisional
Probab=98.54 E-value=1.4e-08 Score=110.52 Aligned_cols=64 Identities=9% Similarity=0.118 Sum_probs=60.7
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeec
Q 008295 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYP 325 (571)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiAp 325 (571)
++.+||+.||.+||++|.+|..|+||||+|++.|+.++|++|+++|+| +++.|.+|.|+||+|.
T Consensus 50 ~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd-in~~d~~g~TpLh~A~ 113 (446)
T PHA02946 50 LDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGAD-PNACDKQHKTPLYYLS 113 (446)
T ss_pred CCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHH
Confidence 468999999999999999999999999999999999999999999999 9999999999999874
No 39
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=98.52 E-value=1.6e-08 Score=116.48 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=59.8
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEeccCCc--hHHHHHHHcCCCCCcccCCCCCceeeeec
Q 008295 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQ--STMDVLCQIGLDGIRMLDPNTSRTLRIYP 325 (571)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~--~iv~vLlq~Gadg~~~lD~~gnn~LhiAp 325 (571)
++.+||+.||++||++|.+|..|+||||+|++.|+. ++|+.|+++||| +++.|..|.|+||.|.
T Consensus 190 ~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD-VN~kD~~G~TPLh~Ai 255 (764)
T PHA02716 190 VDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGD-MDMKCVNGMSPIMTYI 255 (764)
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH
Confidence 468999999999999999999999999999999964 899999999999 9999999999999764
No 40
>PHA02874 ankyrin repeat protein; Provisional
Probab=98.51 E-value=1.6e-08 Score=108.52 Aligned_cols=80 Identities=15% Similarity=0.093 Sum_probs=73.0
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .+||+.|+++|+++|.+|..|+||||+|++.|+.++++.|++.|+
T Consensus 155 ~~g~tpLh~A~~~~~--------------------~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~ 214 (434)
T PHA02874 155 DNGCYPIHIAIKHNF--------------------FDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN 214 (434)
T ss_pred CCCCCHHHHHHHCCc--------------------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 457899999886554 899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe~ 328 (571)
+ +...+..|.|+||+|....
T Consensus 215 ~-i~~~~~~g~TpL~~A~~~~ 234 (434)
T PHA02874 215 H-IMNKCKNGFTPLHNAIIHN 234 (434)
T ss_pred C-CcCCCCCCCCHHHHHHHCC
Confidence 9 8899999999999997653
No 41
>PHA02878 ankyrin repeat protein; Provisional
Probab=98.50 E-value=1.3e-08 Score=110.64 Aligned_cols=76 Identities=11% Similarity=0.071 Sum_probs=67.3
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEecc-CCchHHHHHHHcC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAES-GGQSTMDVLCQIG 306 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~-g~~~iv~vLlq~G 306 (571)
..|.|+||+|+..+ +.+||+.||..||++|.+|..|+||||+|+.. ++.+++++|++.|
T Consensus 199 ~~g~tpLh~A~~~~--------------------~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g 258 (477)
T PHA02878 199 KTNNSPLHHAVKHY--------------------NKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHG 258 (477)
T ss_pred CCCCCHHHHHHHhC--------------------CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC
Confidence 45778999877554 48999999999999999999999999999976 6789999999999
Q ss_pred CCCCcccCC-CCCceeeee
Q 008295 307 LDGIRMLDP-NTSRTLRIY 324 (571)
Q Consensus 307 adg~~~lD~-~gnn~LhiA 324 (571)
++ +++.+. .|.|+||+|
T Consensus 259 ad-vn~~~~~~g~TpLh~A 276 (477)
T PHA02878 259 VD-VNAKSYILGLTALHSS 276 (477)
T ss_pred CC-CCccCCCCCCCHHHHH
Confidence 99 888876 799999998
No 42
>PHA02798 ankyrin-like protein; Provisional
Probab=98.50 E-value=1.9e-08 Score=109.96 Aligned_cols=85 Identities=18% Similarity=0.224 Sum_probs=69.1
Q ss_pred cCcCCCCCCCcccccc--ccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccC---CchHH
Q 008295 225 GARGTVPKSSNSTLFD--DYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG---GQSTM 299 (571)
Q Consensus 225 ~~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g---~~~iv 299 (571)
...+.|.|+||+|+-. ++ .+..+||+.|+++||++|.+|..|+||||+|+..+ +.+++
T Consensus 66 ~~d~~g~TpL~~~~~n~~~~-----------------~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv 128 (489)
T PHA02798 66 GLDNEYSTPLCTILSNIKDY-----------------KHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEIL 128 (489)
T ss_pred CCCCCCCChHHHHHHhHHhH-----------------HhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHH
Confidence 3346778899887632 22 23489999999999999999999999999998875 56889
Q ss_pred HHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 300 DVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 300 ~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
..|++.|+| +++.|..|.|+||+|...
T Consensus 129 ~~Ll~~Gad-vn~~d~~g~tpL~~a~~~ 155 (489)
T PHA02798 129 LFMIENGAD-TTLLDKDGFTMLQVYLQS 155 (489)
T ss_pred HHHHHcCCC-ccccCCCCCcHHHHHHHc
Confidence 999999999 889999999999987554
No 43
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.50 E-value=2.6e-08 Score=107.58 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=77.4
Q ss_pred CCCCCCCcccccccc----------CCcccCCCCcCC---CCccCCCchhHhhhcccCCcccccccccccceEEEEeccC
Q 008295 228 GTVPKSSNSTLFDDY----------GRSISFPSAKDS---RSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG 294 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~----------~~~~~~~~~~~~---~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g 294 (571)
-|++|+|.-|.||+- |.-+..+.--+- --++..|+.+|++.||+.|||+|.++-.|+|+||.+++.|
T Consensus 115 ~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG 194 (615)
T KOG0508|consen 115 RTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESG 194 (615)
T ss_pred ccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcc
Confidence 477788888888842 111111111110 0356677899999999999999999999999999999999
Q ss_pred CchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008295 295 GQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 295 ~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
+.+|+.+|+++|+. + ++|..|-|+|..|.+..
T Consensus 195 ~vdivq~Ll~~ga~-i-~~d~~GmtPL~~Aa~tG 226 (615)
T KOG0508|consen 195 SVDIVQLLLKHGAK-I-DVDGHGMTPLLLAAVTG 226 (615)
T ss_pred cHHHHHHHHhCCce-e-eecCCCCchHHHHhhhc
Confidence 99999999999998 6 67888999999886653
No 44
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.48 E-value=2.1e-08 Score=116.64 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=56.7
Q ss_pred CCchhHhhhcccCCcccccccccccceEEEEeccCC-------------------------------chHHHHHHHcCCC
Q 008295 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGG-------------------------------QSTMDVLCQIGLD 308 (571)
Q Consensus 260 ~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~-------------------------------~~iv~vLlq~Gad 308 (571)
.|+.++|+.||.+||++|.+|..|+||||+|+..|+ .++++.|+++|+|
T Consensus 568 ~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad 647 (823)
T PLN03192 568 KGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLN 647 (823)
T ss_pred cChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCC
Confidence 344999999999999999999999999886655544 4556678889999
Q ss_pred CCcccCCCCCceeeeecccc
Q 008295 309 GIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 309 g~~~lD~~gnn~LhiApLe~ 328 (571)
+++.|.+|+|+||+|..+.
T Consensus 648 -in~~d~~G~TpLh~A~~~g 666 (823)
T PLN03192 648 -VDSEDHQGATALQVAMAED 666 (823)
T ss_pred -CCCCCCCCCCHHHHHHHCC
Confidence 9999999999999987664
No 45
>PHA02798 ankyrin-like protein; Provisional
Probab=98.46 E-value=1.8e-08 Score=110.11 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=71.4
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCC---chHHHHHHH
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGG---QSTMDVLCQ 304 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~---~~iv~vLlq 304 (571)
..|.|+||+|+...+ .++.++|+.|+++||++|++|..|.||||+|++.|+ .++++.|++
T Consensus 107 ~~G~TpLh~a~~~~~-----------------~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~ 169 (489)
T PHA02798 107 SDGETPLYCLLSNGY-----------------INNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE 169 (489)
T ss_pred CCcCcHHHHHHHcCC-----------------cChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHH
Confidence 568899999987654 246899999999999999999999999999999988 799999999
Q ss_pred cCCCCCcccC-CCCCceeeeecccc
Q 008295 305 IGLDGIRMLD-PNTSRTLRIYPLEN 328 (571)
Q Consensus 305 ~Gadg~~~lD-~~gnn~LhiApLe~ 328 (571)
.|+| ++..+ ..+.++||.+....
T Consensus 170 ~gad-in~~~~~~~~t~Lh~~~~~~ 193 (489)
T PHA02798 170 KGVD-INTHNNKEKYDTLHCYFKYN 193 (489)
T ss_pred hCCC-cccccCcCCCcHHHHHHHhc
Confidence 9999 87764 57889999865443
No 46
>PHA02875 ankyrin repeat protein; Provisional
Probab=98.46 E-value=3.1e-08 Score=105.05 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=62.8
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCC-ceeeeeccc
Q 008295 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTS-RTLRIYPLE 327 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gn-n~LhiApLe 327 (571)
++..|+.++|+.|+++|+++|.+|..|+||||+|+..|+.++++.|++.|++ ++..+.+|. ++||+|...
T Consensus 142 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~-~n~~~~~~~~t~l~~A~~~ 212 (413)
T PHA02875 142 AVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN-IDYFGKNGCVAALCYAIEN 212 (413)
T ss_pred HHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCcCCCCCCchHHHHHHHc
Confidence 4567789999999999999999999999999999999999999999999999 888888886 567766544
No 47
>PHA02730 ankyrin-like protein; Provisional
Probab=98.45 E-value=2.8e-08 Score=113.05 Aligned_cols=82 Identities=9% Similarity=0.003 Sum_probs=68.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccC--CchHHHHHHHc
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG--GQSTMDVLCQI 305 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g--~~~iv~vLlq~ 305 (571)
..|.|+||||+..++ -|+.+||++||.+||++|++|..|+||||+|+..+ +.+||++|++.
T Consensus 39 ~~G~TaLh~A~~~~~-----------------~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~ 101 (672)
T PHA02730 39 RRGNNALHCYVSNKC-----------------DTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISS 101 (672)
T ss_pred CCCCcHHHHHHHcCC-----------------cCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhc
Confidence 357899999988763 23589999999999999999999999999999976 68999999999
Q ss_pred CCCC-CcccCCCCCceeeeecc
Q 008295 306 GLDG-IRMLDPNTSRTLRIYPL 326 (571)
Q Consensus 306 Gadg-~~~lD~~gnn~LhiApL 326 (571)
|++- ++..|..+.++||.+..
T Consensus 102 ~~~~~~~~~~~~~d~~l~~y~~ 123 (672)
T PHA02730 102 YSNASNELTSNINDFDLYSYMS 123 (672)
T ss_pred CCCCCcccccccCCchHHHHHH
Confidence 7640 35677778889998866
No 48
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=98.45 E-value=1.4e-08 Score=78.70 Aligned_cols=54 Identities=9% Similarity=0.066 Sum_probs=42.6
Q ss_pred CCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHH
Q 008295 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLC 303 (571)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLl 303 (571)
|-|+||+|+..+ +.++|+.|++.|+++|.+|..|.||||+|+..|+.++++.|+
T Consensus 1 g~t~lh~A~~~g--------------------~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSG--------------------NLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT---------------------HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhC--------------------CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 456788877655 499999999999999999999999999999999999999886
No 49
>PHA02946 ankyin-like protein; Provisional
Probab=98.44 E-value=2.8e-08 Score=108.27 Aligned_cols=62 Identities=6% Similarity=0.069 Sum_probs=37.3
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccC--CchHHHHHHHcCCCCCcccCCCCCceeeeecc
Q 008295 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG--GQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPL 326 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g--~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApL 326 (571)
.++|+.|+++||++|.+|..|+||||+|++.| +.+++.+|++ |++ ++..|..|.|+||+|..
T Consensus 188 ~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad-in~~d~~G~TpLh~A~~ 251 (446)
T PHA02946 188 ASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD-VNKQNKFGDSPLTLLIK 251 (446)
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC-CCCCCCCCCCHHHHHHH
Confidence 45666666666666666666666666666654 3345555553 566 66666666666666543
No 50
>PHA03100 ankyrin repeat protein; Provisional
Probab=98.42 E-value=4.3e-08 Score=105.53 Aligned_cols=67 Identities=21% Similarity=0.197 Sum_probs=50.3
Q ss_pred CCchhHhhhcccCCcccccccccccceEEEEeccC--CchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG--GQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 260 ~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g--~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
.|+.++|+.|+++||++|.++..|+|+||+|++.| +.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 118 ~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~tpL~~A~~~ 186 (480)
T PHA03100 118 SNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD-INAKNRYGYTPLHIAVEK 186 (480)
T ss_pred cChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC-cccccCCCCCHHHHHHHh
Confidence 34577777777777777777777777777777777 67777777777777 777777777777777554
No 51
>PHA02884 ankyrin repeat protein; Provisional
Probab=98.41 E-value=3.9e-08 Score=102.57 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=61.6
Q ss_pred cCCCchhHhhhcccCCccccccc----ccccceEEEEeccCCchHHHHHHHcCCCCCccc-CCCCCceeeeecccc
Q 008295 258 VGSGSSKIVRAVPKVDTHQDVKS----GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRML-DPNTSRTLRIYPLEN 328 (571)
Q Consensus 258 ~~~g~~~iVr~Ll~agA~vn~kd----~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~l-D~~gnn~LhiApLe~ 328 (571)
+..|+.++|+.||++||++|.++ ..|+||||+|++.|+.+++++|+++||| ++.. +..|.|+||+|....
T Consensus 41 ~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-VN~~~~~~g~TpLh~Aa~~~ 115 (300)
T PHA02884 41 IKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-VNRYAEEAKITPLYISVLHG 115 (300)
T ss_pred HHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cCcccCCCCCCHHHHHHHcC
Confidence 34456999999999999999974 6899999999999999999999999999 8875 567999999986654
No 52
>PHA02917 ankyrin-like protein; Provisional
Probab=98.41 E-value=4.9e-08 Score=111.45 Aligned_cols=99 Identities=11% Similarity=0.007 Sum_probs=76.9
Q ss_pred CcCCCCCCCccccccccCCcccCCC----CcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHH
Q 008295 226 ARGTVPKSSNSTLFDDYGRSISFPS----AKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDV 301 (571)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~v 301 (571)
+...|.|+||.|+.-.++ .+.|-. -.........+..++|+.||.+||++|.+|..|+||||+|+..++.++++.
T Consensus 392 ~~~~G~TpL~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~ 470 (661)
T PHA02917 392 HLDDGEIPIGHLCKSNYG-CYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSL 470 (661)
T ss_pred cCCCCCChhHHHHHhccc-chhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHH
Confidence 456799999998744331 000000 000111233446889999999999999999999999999999999999999
Q ss_pred HHHcCCCCCcccCCCCCceeeeecc
Q 008295 302 LCQIGLDGIRMLDPNTSRTLRIYPL 326 (571)
Q Consensus 302 Llq~Gadg~~~lD~~gnn~LhiApL 326 (571)
|++.|+| +++.|..|.|+||+|..
T Consensus 471 Ll~~GAd-in~~d~~G~T~L~~A~~ 494 (661)
T PHA02917 471 LLESGSD-VNIRSNNGYTCIAIAIN 494 (661)
T ss_pred HHHCcCC-CCCCCCCCCCHHHHHHH
Confidence 9999999 99999999999999864
No 53
>PHA02989 ankyrin repeat protein; Provisional
Probab=98.39 E-value=3.7e-08 Score=107.73 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=67.3
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccc-ccccccccceEEEEecc--CCchHHHHHHHc
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQ-DVKSGVQKFRVKLLAES--GGQSTMDVLCQI 305 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~v-n~kd~~~kTpLHlaa~~--g~~~iv~vLlq~ 305 (571)
.|.|+||+|++.. ..|+.+||+.||.+||++ +.+|..|+||||+|++. ++.++++.|++.
T Consensus 107 ~g~tpL~~a~~~~-----------------~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~ 169 (494)
T PHA02989 107 NGVSPIVCFIYNS-----------------NINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF 169 (494)
T ss_pred CCCcHHHHHHHhc-----------------ccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence 4577788776532 235689999999999999 89999999999998754 567999999999
Q ss_pred CCCCCcc-cCCCCCceeeeecccc
Q 008295 306 GLDGIRM-LDPNTSRTLRIYPLEN 328 (571)
Q Consensus 306 Gadg~~~-lD~~gnn~LhiApLe~ 328 (571)
|+| ++. .|..|.|+||++....
T Consensus 170 Gad-i~~~~~~~g~tpL~~a~~~~ 192 (494)
T PHA02989 170 GVN-LFEKTSLYGLTPMNIYLRND 192 (494)
T ss_pred CCC-ccccccccCCChHHHHHhcc
Confidence 999 766 6788999999885554
No 54
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.38 E-value=9.1e-08 Score=100.19 Aligned_cols=69 Identities=32% Similarity=0.772 Sum_probs=57.4
Q ss_pred CCCCCCCCccCcCCccccccCccccC-----------ccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 415 GNEEKDHWVPDEAVSKCTACGTDFSA-----------FVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 415 ~~~~~~~WvpD~~~~~C~~C~~~Fsl-----------~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
+..+.+.|+.+. .|..|...|.. -.|.||||+||+.||..|++++...+.-+....+|+|+.||..
T Consensus 272 ~r~etpewl~s~---~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~ 348 (404)
T KOG1409|consen 272 KRVETPEWLDSD---SCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPT 348 (404)
T ss_pred eeecCccccccc---hhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchh
Confidence 345578899865 89999988742 3578999999999999999999988877777889999999997
Q ss_pred HHH
Q 008295 484 VTQ 486 (571)
Q Consensus 484 l~~ 486 (571)
+..
T Consensus 349 i~~ 351 (404)
T KOG1409|consen 349 IKD 351 (404)
T ss_pred hhc
Confidence 753
No 55
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=98.37 E-value=6.9e-08 Score=106.31 Aligned_cols=63 Identities=29% Similarity=0.620 Sum_probs=52.9
Q ss_pred CCCCccCcCCccccccCcccc-CccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHH
Q 008295 419 KDHWVPDEAVSKCTACGTDFS-AFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (571)
Q Consensus 419 ~~~WvpD~~~~~C~~C~~~Fs-l~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l 484 (571)
.+.| +.++..|+.|+..|+ .+.|||||+.||.++|+.|+.++..+.. ......|||..|+...
T Consensus 408 ~~r~--~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l~~-~~s~ssrv~~~~~~~~ 471 (623)
T KOG4424|consen 408 APRR--DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKLSY-DNSRSSRVCMDRYLTP 471 (623)
T ss_pred Cccc--ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhhhhcc-cccchhhhhhhhccCC
Confidence 3455 777999999999998 5689999999999999999999887765 3456789999999753
No 56
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=98.36 E-value=1.1e-07 Score=94.96 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=61.8
Q ss_pred CCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccccccc
Q 008295 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRC 332 (571)
Q Consensus 260 ~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~Itr~ 332 (571)
-|+..+|+.||..||++++......++|.||.+.|..+||++|+..+.| +++.|-+|-|+|-.|+..+-++|
T Consensus 170 ~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkc 241 (296)
T KOG0502|consen 170 KGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKC 241 (296)
T ss_pred cCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC-cceeccCCCceeeeeecCChHHH
Confidence 3458899999999999998888888999999999988999999999999 88999999999988887765544
No 57
>PHA02876 ankyrin repeat protein; Provisional
Probab=98.36 E-value=7.2e-08 Score=109.44 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=56.2
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEeccC-CchHHHHHHHcCCCCCcccCCCCCceeeeecc
Q 008295 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG-GQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPL 326 (571)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g-~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApL 326 (571)
+..++|+.|+..||++|.+|..|+||||+|++.| +.+++++|++.|+| +++.|..|.|+||+|..
T Consensus 420 ~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad-~n~~d~~g~tpl~~a~~ 485 (682)
T PHA02876 420 NPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGAD-VNAINIQNQYPLLIALE 485 (682)
T ss_pred CHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHH
Confidence 3467889999999999999999999999999876 46889999999999 88999999999998743
No 58
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.33 E-value=8.7e-08 Score=109.40 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=66.3
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008295 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
++..|+.++|+.||++||++|.+|..|+|+||+|+..|+.++++.|++.|+| +++.|.+|.|+||+|....
T Consensus 89 aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~A~~~g 159 (664)
T PTZ00322 89 LAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENG 159 (664)
T ss_pred HHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCC
Confidence 3556779999999999999999999999999999999999999999999999 9999999999999998763
No 59
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.33 E-value=8.7e-08 Score=111.61 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=66.3
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
+|..|+.++|+.||++|+++|.+|..|+||||+|+.+|+.+++++|++.|+| ++..|.+|+|+||.|...
T Consensus 532 Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-in~~d~~G~TpL~~A~~~ 601 (823)
T PLN03192 532 VASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-VHIRDANGNTALWNAISA 601 (823)
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-CCCcCCCCCCHHHHHHHh
Confidence 5677899999999999999999999999999999999999999999999999 999999999999998655
No 60
>PHA02792 ankyrin-like protein; Provisional
Probab=98.32 E-value=7.7e-08 Score=108.66 Aligned_cols=63 Identities=16% Similarity=0.080 Sum_probs=59.2
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecc
Q 008295 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPL 326 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApL 326 (571)
.+|++.|+++||++|.+|..|+||||+|++.++.++++.|+++|++ ++..|..|.|+||+|..
T Consensus 390 ~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GAD-IN~kD~~G~TpL~~A~~ 452 (631)
T PHA02792 390 LSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGAD-INITTKYGSTCIGICVI 452 (631)
T ss_pred HHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH
Confidence 4688999999999999999999999999999999999999999999 99999999999999843
No 61
>PHA03100 ankyrin repeat protein; Provisional
Probab=98.31 E-value=1.6e-07 Score=101.20 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=63.8
Q ss_pred cCCCchhHhhhcccCCcccccccccccceEEEEe--ccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008295 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLA--ESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 258 ~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa--~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
+..|+.++|+.|++.||++|.+|..|.||||+|+ +.|+.++++.|++.|++ ++..|..|.++||+|....
T Consensus 81 ~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 152 (480)
T PHA03100 81 NLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESN 152 (480)
T ss_pred HhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcC
Confidence 4445699999999999999999999999999999 99999999999999999 9999999999999986543
No 62
>PHA02876 ankyrin repeat protein; Provisional
Probab=98.31 E-value=9.7e-08 Score=108.40 Aligned_cols=100 Identities=12% Similarity=0.096 Sum_probs=76.2
Q ss_pred cCCCCCCCcccccccc-----------CCcccCCCCcCCC---Cc-cCCCchhHhhhcccCCcccccccccccceEEEEe
Q 008295 227 RGTVPKSSNSTLFDDY-----------GRSISFPSAKDSR---SS-VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLA 291 (571)
Q Consensus 227 ~~~~~~~~~~a~~~~~-----------~~~~~~~~~~~~~---~~-~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa 291 (571)
-..|.|+||+|+..++ |..+......... -+ ...++.++|+.|++.||++|.+|..|+||||+|+
T Consensus 304 d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa 383 (682)
T PHA02876 304 NIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAA 383 (682)
T ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHH
Confidence 3567889999987653 2222211110000 01 1245789999999999999999999999999999
Q ss_pred ccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 292 ESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 292 ~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
..|+.++++.|++.|++ ++..+..|.|+||+|...
T Consensus 384 ~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~~ 418 (682)
T PHA02876 384 VRNNVVIINTLLDYGAD-IEALSQKIGTALHFALCG 418 (682)
T ss_pred HcCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHHc
Confidence 99999999999999999 889999999999998643
No 63
>PHA02743 Viral ankyrin protein; Provisional
Probab=98.30 E-value=1.6e-07 Score=88.87 Aligned_cols=69 Identities=7% Similarity=-0.068 Sum_probs=60.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcc-cCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVP-KVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll-~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~G 306 (571)
..|.|+||+|+..+. .+||+.|+ +.|++++.+|..|+||||+|+..++.+++++|++.|
T Consensus 92 ~~g~TpLh~A~~~g~--------------------~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g 151 (166)
T PHA02743 92 GTGNTLLHIAASTKN--------------------YELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANG 151 (166)
T ss_pred CCCCcHHHHHHHhCC--------------------HHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 468899999886654 89999999 589999999999999999999999999999999999
Q ss_pred CCCCcccCCCC
Q 008295 307 LDGIRMLDPNT 317 (571)
Q Consensus 307 adg~~~lD~~g 317 (571)
++ ++..+-.|
T Consensus 152 a~-~~~~~~~~ 161 (166)
T PHA02743 152 AV-CDDPLSIG 161 (166)
T ss_pred CC-CCCcccCC
Confidence 99 76655554
No 64
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=1.5e-07 Score=100.18 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=55.6
Q ss_pred CCCCCccCcCCccccccCcccc-CccccccccccCceeccCCCCCcEeccC-CCCCCceeeccccHHHH
Q 008295 418 EKDHWVPDEAVSKCTACGTDFS-AFVRKHHCRNCGDIFCDKCTHGRIALTA-DANAQPVRVCDRCMAEV 484 (571)
Q Consensus 418 ~~~~WvpD~~~~~C~~C~~~Fs-l~~RKHHCR~CG~VfC~~CS~~~i~Lp~-~~~~~pvRVC~~Cy~~l 484 (571)
..+.|..++....|+.|...|+ ++.||||||+|+.+||..|+..+-.++. ..-..+.|||+.|+..+
T Consensus 150 ~ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p~a~d~l~RVldS~~~nl 218 (473)
T KOG1843|consen 150 EAPVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVPFAADPLQRVLDSCAFNL 218 (473)
T ss_pred cCccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCCcccCCHHHHHhhHhhcc
Confidence 3578999999999999999999 5689999999999999999976544432 23345789999999876
No 65
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=98.29 E-value=5.1e-08 Score=111.85 Aligned_cols=79 Identities=15% Similarity=0.085 Sum_probs=71.4
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccccc--------------ccccceEEEEeccC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKS--------------GVQKFRVKLLAESG 294 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd--------------~~~kTpLHlaa~~g 294 (571)
.|.|+||+||-.+. .+||+.||+.||++|.++ ..|.||||+|+..|
T Consensus 127 ~G~TpLhlAa~~~~--------------------~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~ 186 (743)
T TIGR00870 127 PGITALHLAAHRQN--------------------YEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLG 186 (743)
T ss_pred CCCcHHHHHHHhCC--------------------HHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhC
Confidence 47899999887664 999999999999999764 26899999999999
Q ss_pred CchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008295 295 GQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 295 ~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
+.+++++|+++|+| ++..|..|+|+||+|.++.
T Consensus 187 ~~~iv~lLl~~gad-in~~d~~g~T~Lh~A~~~~ 219 (743)
T TIGR00870 187 SPSIVALLSEDPAD-ILTADSLGNTLLHLLVMEN 219 (743)
T ss_pred CHHHHHHHhcCCcc-hhhHhhhhhHHHHHHHhhh
Confidence 99999999999999 9999999999999998874
No 66
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=98.28 E-value=1.4e-07 Score=108.88 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=54.4
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEec--------------cCCchHHHHHHHcCCCCCcccCCCCCceeee
Q 008295 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAE--------------SGGQSTMDVLCQIGLDGIRMLDPNTSRTLRI 323 (571)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~--------------~g~~~iv~vLlq~Gadg~~~lD~~gnn~Lhi 323 (571)
++.++|+.||++||++|.+|..|+||||+|+. .++.+++++|++.|+| +++.|..|.|+||.
T Consensus 330 ~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD-In~kn~~G~TPLh~ 405 (764)
T PHA02716 330 ISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD-ITAVNCLGYTPLTS 405 (764)
T ss_pred CCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC-CCCcCCCCCChHHH
Confidence 35789999999999999999999999998754 3567899999999999 99999999999994
No 67
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.28 E-value=1.6e-07 Score=99.09 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=60.7
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHH-cCCCCCcccCCCCCceeeee
Q 008295 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQ-IGLDGIRMLDPNTSRTLRIY 324 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq-~Gadg~~~lD~~gnn~LhiA 324 (571)
+|.-|..++|++||..|||||++|-.|-|+|.+|++.||.+|+.+||- .+.| +.+.|.+|.|+|.||
T Consensus 347 AVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd-~sLtD~DgSTAl~IA 414 (452)
T KOG0514|consen 347 AVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD-ISLTDVDGSTALSIA 414 (452)
T ss_pred hhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccc-ceeecCCCchhhhhH
Confidence 456678999999999999999999999999999999999999998887 5566 779999999999997
No 68
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=98.27 E-value=2.4e-07 Score=85.97 Aligned_cols=92 Identities=8% Similarity=0.078 Sum_probs=78.4
Q ss_pred ccccccCcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCc---ccccccccccceEEEEeccCCc
Q 008295 220 KLEPYGARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDT---HQDVKSGVQKFRVKLLAESGGQ 296 (571)
Q Consensus 220 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA---~vn~kd~~~kTpLHlaa~~g~~ 296 (571)
.+++.----.|.|+||+|++.+.- ..|..++|+.||++|+ ..+.+|..|+||||+|+..|+.
T Consensus 96 ~~~~~~~~~~g~t~l~~a~~~~~~---------------~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~ 160 (235)
T COG0666 96 GADVNAKDADGDTPLHLAALNGNP---------------PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDA 160 (235)
T ss_pred CCCcccccCCCCcHHHHHHhcCCc---------------ccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCch
Confidence 345555566788999999988751 4566999999999999 5555599999999999999999
Q ss_pred hHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 297 STMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 297 ~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
.++.+|++.|++ ++..+..|.++|+++...
T Consensus 161 ~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~ 190 (235)
T COG0666 161 DIVELLLEAGAD-PNSRNSYGVTALDPAAKN 190 (235)
T ss_pred HHHHHHHhcCCC-CcccccCCCcchhhhccc
Confidence 999999999999 889999999999998555
No 69
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.27 E-value=2.4e-07 Score=101.38 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=73.9
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
-+|-|+||-+..|+. ..||+.|+..||.||..|+.+|||||.|+--|+..|+..||++|+
T Consensus 71 ~DglTalhq~~id~~--------------------~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA 130 (527)
T KOG0505|consen 71 VDGLTALHQACIDDN--------------------LEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGA 130 (527)
T ss_pred CccchhHHHHHhccc--------------------HHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhh
Confidence 356788999888887 999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe~ 328 (571)
+ +.++|.+|+-++-++.-+.
T Consensus 131 ~-~~avNsdg~~P~dl~e~ea 150 (527)
T KOG0505|consen 131 N-LLAVNSDGNMPYDLAEDEA 150 (527)
T ss_pred h-hhhccCCCCCccccccCcc
Confidence 9 9999999999998876554
No 70
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.26 E-value=2.6e-07 Score=105.04 Aligned_cols=64 Identities=17% Similarity=0.260 Sum_probs=37.7
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
.++|+.|+++||+.+..|..+++|||+|+..|..+.+.+|++.|+| +++.|.++.|+||+|..+
T Consensus 101 ~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~d-vnl~de~~~TpLh~A~~~ 164 (929)
T KOG0510|consen 101 GDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGAD-VNLEDENGFTPLHLAARK 164 (929)
T ss_pred HHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCC-ccccccCCCchhhHHHhc
Confidence 5555556666666555555566666666655555555566665555 555555555566555544
No 71
>PHA02736 Viral ankyrin protein; Provisional
Probab=98.24 E-value=2e-07 Score=86.21 Aligned_cols=50 Identities=10% Similarity=0.047 Sum_probs=46.2
Q ss_pred CCCchhHhhhccc-CCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 259 GSGSSKIVRAVPK-VDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 259 ~~g~~~iVr~Ll~-agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
..|+.+||+.||. .|+++|.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 101 ~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~ 151 (154)
T PHA02736 101 YTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ 151 (154)
T ss_pred HhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3445999999997 6999999999999999999999999999999999998
No 72
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.20 E-value=3e-07 Score=100.67 Aligned_cols=78 Identities=12% Similarity=0.113 Sum_probs=72.1
Q ss_pred CCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCC
Q 008295 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDG 309 (571)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg 309 (571)
|.|.||.||-++| ..+.++||++|.+++++|..|+||||-||.=|..+++++|+++|++
T Consensus 198 G~T~lHvAaa~Gy--------------------~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~- 256 (527)
T KOG0505|consen 198 GATALHVAAANGY--------------------TEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGAD- 256 (527)
T ss_pred cchHHHHHHhhhH--------------------HHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcc-
Confidence 7888999988888 8999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCceeeeecccc
Q 008295 310 IRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 310 ~~~lD~~gnn~LhiApLe~ 328 (571)
+++....|.++|-++.-+.
T Consensus 257 ~d~~t~~g~~p~dv~dee~ 275 (527)
T KOG0505|consen 257 MDAKTKMGETPLDVADEEE 275 (527)
T ss_pred cchhhhcCCCCccchhhhh
Confidence 9999999999988874443
No 73
>PHA02917 ankyrin-like protein; Provisional
Probab=98.17 E-value=3e-07 Score=105.14 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=59.2
Q ss_pred CCCchhHhhhcccCCcccccccc---cc-----------cceEEEEec-----------cCCchHHHHHHHcCCCCCccc
Q 008295 259 GSGSSKIVRAVPKVDTHQDVKSG---VQ-----------KFRVKLLAE-----------SGGQSTMDVLCQIGLDGIRML 313 (571)
Q Consensus 259 ~~g~~~iVr~Ll~agA~vn~kd~---~~-----------kTpLHlaa~-----------~g~~~iv~vLlq~Gadg~~~l 313 (571)
..|+.+||++||++||++|.+|. .| +|+||+|+. .++.++++.|++.|+| ++..
T Consensus 147 ~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~~ 225 (661)
T PHA02917 147 DDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-PSSI 225 (661)
T ss_pred cCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-cccC
Confidence 45789999999999999997654 23 599999975 4577999999999999 9999
Q ss_pred CCCCCceeeeeccc
Q 008295 314 DPNTSRTLRIYPLE 327 (571)
Q Consensus 314 D~~gnn~LhiApLe 327 (571)
|.+|.|+||+|...
T Consensus 226 d~~G~TpLh~A~~~ 239 (661)
T PHA02917 226 DKNYCTALQYYIKS 239 (661)
T ss_pred CCCCCcHHHHHHHc
Confidence 99999999999765
No 74
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=98.16 E-value=1.3e-07 Score=74.38 Aligned_cols=44 Identities=9% Similarity=-0.044 Sum_probs=29.4
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEE
Q 008295 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLL 290 (571)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHla 290 (571)
-..|.|+||||+..+. .++|+.||++|++++++|..|+||||+|
T Consensus 13 d~~G~T~LH~A~~~g~--------------------~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 13 DKYGNTPLHWAARYGH--------------------SEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -TTS--HHHHHHHHT---------------------HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCCCCcHHHHHHHcCc--------------------HHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 3456799999998775 9999999999999999999999999987
No 75
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=98.16 E-value=8.7e-07 Score=88.60 Aligned_cols=96 Identities=13% Similarity=0.023 Sum_probs=75.4
Q ss_pred CCCCCCCccccccccCCcccCC--CCcC------CC-----CccCCCchhHhhhcccCCcccccccccccceEEEEeccC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFP--SAKD------SR-----SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG 294 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~--~~~~------~~-----~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g 294 (571)
..|.|+|.|||.++-=.-+-|- ++-+ .| -+...|..+||++||..+.+||+-|-+|-|||-+|++.+
T Consensus 158 e~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgn 237 (296)
T KOG0502|consen 158 EFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGN 237 (296)
T ss_pred ccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCC
Confidence 3467999999987631111110 1100 01 133567899999999999999999999999999999999
Q ss_pred CchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008295 295 GQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (571)
Q Consensus 295 ~~~iv~vLlq~Gadg~~~lD~~gnn~LhiA 324 (571)
|.++|+.|++.||| +...|..|++.+.+|
T Consensus 238 hvkcve~Ll~sGAd-~t~e~dsGy~~mdlA 266 (296)
T KOG0502|consen 238 HVKCVESLLNSGAD-VTQEDDSGYWIMDLA 266 (296)
T ss_pred hHHHHHHHHhcCCC-cccccccCCcHHHHH
Confidence 99999999999999 989999999887765
No 76
>PHA02795 ankyrin-like protein; Provisional
Probab=98.11 E-value=3.9e-07 Score=99.40 Aligned_cols=68 Identities=9% Similarity=0.111 Sum_probs=58.0
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCC--------chHH
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGG--------QSTM 299 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~--------~~iv 299 (571)
..|.|+||+|+..+. .++|+.||++||++|.+|..|+||||+|+++|+ .+++
T Consensus 219 ~~G~TpLh~Aa~~g~--------------------~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIv 278 (437)
T PHA02795 219 AGGRTLLYRAIYAGY--------------------IDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKIL 278 (437)
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHH
Confidence 357788888776554 899999999999999999999999999999984 4899
Q ss_pred HHHHHcCCCCCcccCCC
Q 008295 300 DVLCQIGLDGIRMLDPN 316 (571)
Q Consensus 300 ~vLlq~Gadg~~~lD~~ 316 (571)
++|++.|++ ++.++..
T Consensus 279 elLL~~gad-I~~~~~~ 294 (437)
T PHA02795 279 EILLREPLS-IDCIKLA 294 (437)
T ss_pred HHHHhCCCC-CCchhHH
Confidence 999999999 7665433
No 77
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.09 E-value=4e-07 Score=93.81 Aligned_cols=77 Identities=12% Similarity=0.144 Sum_probs=67.8
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccc-cccccceEEEEeccCCchHHHHHHHcCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVK-SGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~k-d~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
+|-+.|.-|||++. .++|++||..|||||.+ ++.+.||||.||-.|+.+++++|++.|+
T Consensus 44 sGMs~LahAaykGn--------------------l~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa 103 (396)
T KOG1710|consen 44 SGMSVLAHAAYKGN--------------------LTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGA 103 (396)
T ss_pred CcccHHHHHHhcCc--------------------HHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccC
Confidence 45566777777765 99999999999999998 7899999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecc
Q 008295 308 DGIRMLDPNTSRTLRIYPL 326 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApL 326 (571)
. +.++|.-|.|+-.+|..
T Consensus 104 ~-~~~vNsvgrTAaqmAAF 121 (396)
T KOG1710|consen 104 R-MYLVNSVGRTAAQMAAF 121 (396)
T ss_pred c-cccccchhhhHHHHHHH
Confidence 9 88999999988766543
No 78
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=1.2e-06 Score=95.98 Aligned_cols=67 Identities=10% Similarity=0.111 Sum_probs=54.9
Q ss_pred ccccCcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHH
Q 008295 222 EPYGARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDV 301 (571)
Q Consensus 222 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~v 301 (571)
+|--+-.-|-|+||. ++-.|+..|||.||.+||+||+.|.+||||||+||--++.-+|+.
T Consensus 575 DpSqpNdEGITaLHN--------------------AiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckq 634 (752)
T KOG0515|consen 575 DPSQPNDEGITALHN--------------------AICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQ 634 (752)
T ss_pred CCCCCCccchhHHhh--------------------hhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHH
Confidence 344556667778877 345667899999999999999999999999999998888888999
Q ss_pred HHHcCCC
Q 008295 302 LCQIGLD 308 (571)
Q Consensus 302 Llq~Gad 308 (571)
|+|.|+-
T Consensus 635 LVe~Gaa 641 (752)
T KOG0515|consen 635 LVESGAA 641 (752)
T ss_pred HHhccce
Confidence 9999987
No 79
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=98.06 E-value=2.1e-06 Score=102.61 Aligned_cols=51 Identities=35% Similarity=0.929 Sum_probs=41.5
Q ss_pred CCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHHhh
Q 008295 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRL 488 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~r~ 488 (571)
....|..|. +.++||||||.||++||.+|... ..+.+|||+.|+..+..+.
T Consensus 4 s~~~~~~~~---t~~~~~~~~~~~g~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~ 54 (1598)
T KOG0230|consen 4 SSNVCYDCD---TSVNRRHHCRVCGRVFCSKCQDS--------PETSIRVCNECRGQWEQGN 54 (1598)
T ss_pred cccchhccc---cccccCCCCcccCceeccccCCC--------CccceeehhhhhhhccccC
Confidence 356788888 78899999999999999999821 1237899999999876554
No 80
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=98.03 E-value=9.2e-07 Score=85.76 Aligned_cols=83 Identities=11% Similarity=-0.006 Sum_probs=67.8
Q ss_pred hhHhhhcccCCc-ccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccccccccccccccce
Q 008295 263 SKIVRAVPKVDT-HQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRCELADSSTLA 341 (571)
Q Consensus 263 ~~iVr~Ll~agA-~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~Itr~~l~d~~~~~ 341 (571)
...||.||+-.| .||.+|..+.||||-|+++||.+||..|++.||+ ..+.-..|.|+||-|.-=+..+| ..
T Consensus 76 l~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWnN~~v-------a~ 147 (228)
T KOG0512|consen 76 LTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWNNFEV-------AG 147 (228)
T ss_pred HHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhcccchhH-------HH
Confidence 788999988887 7999999999999999999999999999999999 88999999999999855444333 12
Q ss_pred eeccCcCCchhh
Q 008295 342 FWSKSSVDIEPR 353 (571)
Q Consensus 342 f~sks~Vdie~~ 353 (571)
++...+.|+.+.
T Consensus 148 ~LLqhgaDVnA~ 159 (228)
T KOG0512|consen 148 RLLQHGADVNAQ 159 (228)
T ss_pred HHHhccCccccc
Confidence 344555555443
No 81
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=98.01 E-value=6.6e-07 Score=79.08 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=63.1
Q ss_pred ccccCcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHH
Q 008295 222 EPYGARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDV 301 (571)
Q Consensus 222 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~v 301 (571)
|-||.| ++||+|| || |..+|++.|+.-||++|.+|..+-|||--|+.+||.+.|++
T Consensus 30 ~~~ggR----~plhyAA--D~------------------GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVkl 85 (117)
T KOG4214|consen 30 EIYGGR----TPLHYAA--DY------------------GQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKL 85 (117)
T ss_pred HHhCCc----ccchHhh--hc------------------chHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHH
Confidence 456544 8999976 44 56999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCcccCCCCCce
Q 008295 302 LCQIGLDGIRMLDPNTSRT 320 (571)
Q Consensus 302 Llq~Gadg~~~lD~~gnn~ 320 (571)
|+++||| -.+.-++|-+.
T Consensus 86 LL~~GAd-rt~~~PdG~~~ 103 (117)
T KOG4214|consen 86 LLQNGAD-RTIHAPDGTAL 103 (117)
T ss_pred HHHcCcc-cceeCCCchhH
Confidence 9999999 55666777433
No 82
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=97.98 E-value=7e-07 Score=98.90 Aligned_cols=65 Identities=32% Similarity=0.747 Sum_probs=55.5
Q ss_pred CCCCccCc----CCccccc-cCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 419 KDHWVPDE----AVSKCTA-CGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 419 ~~~WvpD~----~~~~C~~-C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
..+|++|. .-..||. |+..|..++||||||.||...|..|...+......++..+.++|+.|+.+
T Consensus 313 l~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~gse~~Adg~Dq~psv 382 (1141)
T KOG1811|consen 313 LHNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCGSENPADGCDQCPSV 382 (1141)
T ss_pred hhhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhcccccCcccccccccch
Confidence 56899997 3467885 57899999999999999999999999988777666667899999999964
No 83
>PHA02730 ankyrin-like protein; Provisional
Probab=97.98 E-value=1.3e-06 Score=99.66 Aligned_cols=62 Identities=8% Similarity=0.047 Sum_probs=58.3
Q ss_pred hHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCC-CCCceeeeecc
Q 008295 264 KIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDP-NTSRTLRIYPL 326 (571)
Q Consensus 264 ~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~-~gnn~LhiApL 326 (571)
+||+.||.+||++|++|..|+||||+|+..++.++++.|+++||+ ++..|. .|.++||.|..
T Consensus 443 ~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAd-IN~~d~~~g~TaL~~Aa~ 505 (672)
T PHA02730 443 DVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGAS-VNTTSRSIINTAIQKSSY 505 (672)
T ss_pred HHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCcCCcCHHHHHHH
Confidence 579999999999999999999999999999999999999999999 999997 58999999864
No 84
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.94 E-value=2.1e-06 Score=98.28 Aligned_cols=73 Identities=11% Similarity=0.061 Sum_probs=63.0
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHc--
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI-- 305 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~-- 305 (571)
..|.|+||+|+..+. .+||+.||++||++|.+|..|+||||+|++.|+.+++++|+++
T Consensus 113 ~~G~TpLh~Aa~~g~--------------------~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~ 172 (664)
T PTZ00322 113 YDGRTPLHIACANGH--------------------VQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQ 172 (664)
T ss_pred CCCCcHHHHHHHCCC--------------------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCC
Confidence 467899999876654 9999999999999999999999999999999999999999998
Q ss_pred -----CCCCCcccCCCCCcee
Q 008295 306 -----GLDGIRMLDPNTSRTL 321 (571)
Q Consensus 306 -----Gadg~~~lD~~gnn~L 321 (571)
|++ .+..+..|.+++
T Consensus 173 ~~~~~ga~-~~~~~~~g~~~~ 192 (664)
T PTZ00322 173 CHFELGAN-AKPDSFTGKPPS 192 (664)
T ss_pred cccccCCC-CCccccCCCCcc
Confidence 777 656666665544
No 85
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=97.94 E-value=1.5e-06 Score=80.56 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=62.2
Q ss_pred CCchhHhhhcccCCcccccccccccceEEEEeccCC-----chHHHHHHHcCC--CCCcccCCCCCceeeeecccc
Q 008295 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGG-----QSTMDVLCQIGL--DGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 260 ~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~-----~~iv~vLlq~Ga--dg~~~lD~~gnn~LhiApLe~ 328 (571)
.+..++++.|+..|++++.+|..|.|+||+|+..++ .++++.|++.|+ +-....|.+|+++||+|.+..
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~ 158 (235)
T COG0666 83 KGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNG 158 (235)
T ss_pred cCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcC
Confidence 345888999999999999999999999999999999 899999999999 536677999999999997764
No 86
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=97.93 E-value=3.1e-06 Score=100.60 Aligned_cols=92 Identities=13% Similarity=0.067 Sum_probs=71.5
Q ss_pred ccccccCcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHH
Q 008295 220 KLEPYGARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTM 299 (571)
Q Consensus 220 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv 299 (571)
+.++=-+-+++.|+||.|+-.+- .++|++|++.||+|+.+|..+.|+||+|+..|+.+|+
T Consensus 199 ~~~~~a~~~~~~tpl~~a~~~nr--------------------i~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~ 258 (1143)
T KOG4177|consen 199 KADPNASALNGFTPLHIACKKNR--------------------IKVVELLLKHGADVSAKDESGLTPLHVAAFMGHLDIV 258 (1143)
T ss_pred cCCccccccCCCCchhhhccccc--------------------cceeeeeeeccCcCCcccccCccHHHHHHhccchhHH
Confidence 45666677889999999887775 6777788888888888888888888888888877888
Q ss_pred HHHHHcCCCCCcccCCCCCceeeeecccccccc
Q 008295 300 DVLCQIGLDGIRMLDPNTSRTLRIYPLENITRC 332 (571)
Q Consensus 300 ~vLlq~Gadg~~~lD~~gnn~LhiApLe~Itr~ 332 (571)
.+|++.|+. +++.+-.+.|+||+|++...+++
T Consensus 259 ~~l~~~ga~-~~~~~vr~~tplh~AA~~~~~e~ 290 (1143)
T KOG4177|consen 259 KLLLQHGAS-VNVSTVRGETPLHMAARAGQVEV 290 (1143)
T ss_pred HHHHhcccc-cCcccccccCcchhhhccchhhh
Confidence 888888877 77778888888888777765443
No 87
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=97.91 E-value=1.6e-06 Score=73.58 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=68.9
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
.|.++||+|++.+. .++|+.|++.|++++.++..|.|+||+|+..+..++++.|++.|++
T Consensus 6 ~g~t~l~~a~~~~~--------------------~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~ 65 (126)
T cd00204 6 DGRTPLHLAASNGH--------------------LEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD 65 (126)
T ss_pred CCCCHHHHHHHcCc--------------------HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 45688888887765 8999999999999999999999999999999999999999999987
Q ss_pred CCcccCCCCCceeeeeccc
Q 008295 309 GIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 309 g~~~lD~~gnn~LhiApLe 327 (571)
++..+..+.+++|.|...
T Consensus 66 -~~~~~~~~~~~l~~a~~~ 83 (126)
T cd00204 66 -VNARDKDGNTPLHLAARN 83 (126)
T ss_pred -ccccCCCCCCHHHHHHHc
Confidence 778889999999987443
No 88
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=97.84 E-value=6e-06 Score=93.67 Aligned_cols=70 Identities=13% Similarity=0.051 Sum_probs=62.4
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
++..|+.+||++||++++.+|+.+..+.||||+||..||.+++.+||+.|+| .-+.|.++.|+|.+|..-
T Consensus 89 aaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qf 158 (854)
T KOG0507|consen 89 AAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNAD-PFIRNNSKETVLDLASRF 158 (854)
T ss_pred hhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCC-ccccCcccccHHHHHHHh
Confidence 5567789999999999999999999999999999999999999999999999 558899999998887543
No 89
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.83 E-value=5.9e-06 Score=87.51 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=47.5
Q ss_pred ccccc-cccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008295 275 HQDVK-SGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 275 ~vn~k-d~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
+||+| ..+|||+|.||+-.|..++|..||-.||| +++.|.+|.|+|.-|.-|.
T Consensus 331 nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHG 384 (452)
T KOG0514|consen 331 DVNAKASQHGQTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHG 384 (452)
T ss_pred CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhC
Confidence 46666 46999999999999999999999999999 9999999999998886663
No 90
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=97.83 E-value=2.8e-06 Score=72.08 Aligned_cols=79 Identities=13% Similarity=0.150 Sum_probs=69.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.++||.|+..+. .++++.|++.|+.++..+..++|++|+|++.++.++++.|++.|.
T Consensus 38 ~~g~~~l~~a~~~~~--------------------~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~ 97 (126)
T cd00204 38 NDGRTPLHLAAKNGH--------------------LEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGA 97 (126)
T ss_pred CCCCcHHHHHHHcCC--------------------HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 356678888776665 799999999999999999999999999999999999999999998
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
+ +...|..+.++|+++...
T Consensus 98 ~-~~~~~~~~~~~l~~~~~~ 116 (126)
T cd00204 98 D-VNARDKDGRTPLHLAAKN 116 (126)
T ss_pred C-CcccCCCCCCHHHHHHhc
Confidence 8 888999999999887433
No 91
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=97.82 E-value=2.6e-06 Score=88.46 Aligned_cols=64 Identities=22% Similarity=0.446 Sum_probs=49.6
Q ss_pred CCCccCcCCccccccCccccCccccccccccCceeccCCCCC-cE--eccC---CCCCCceeeccccHHH
Q 008295 420 DHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHG-RI--ALTA---DANAQPVRVCDRCMAE 483 (571)
Q Consensus 420 ~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~-~i--~Lp~---~~~~~pvRVC~~Cy~~ 483 (571)
..|+-+.++..|..|...|.++.|.||||.||+|||..|+.. .. ++.. .-..+..+.|..|...
T Consensus 12 ~~~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 12 VDWQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHHHhccchhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence 568888899999999999999999999999999999999871 11 1110 1123456888888876
No 92
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.81 E-value=2.6e-06 Score=97.15 Aligned_cols=66 Identities=14% Similarity=0.222 Sum_probs=57.9
Q ss_pred chhHhhhcccCCcccccc---------cc--------------cccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCC
Q 008295 262 SSKIVRAVPKVDTHQDVK---------SG--------------VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTS 318 (571)
Q Consensus 262 ~~~iVr~Ll~agA~vn~k---------d~--------------~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gn 318 (571)
+.++|++||++|||||++ |. -|..||-+||=-+..+|+++|++.||| +++.|.+||
T Consensus 196 ~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd-~~aqDS~GN 274 (782)
T KOG3676|consen 196 DAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD-PNAQDSNGN 274 (782)
T ss_pred cHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC-CCccccCCC
Confidence 489999999999999953 21 256789999999999999999999999 999999999
Q ss_pred ceeeeecccc
Q 008295 319 RTLRIYPLEN 328 (571)
Q Consensus 319 n~LhiApLe~ 328 (571)
|.||+-+++.
T Consensus 275 TVLH~lVi~~ 284 (782)
T KOG3676|consen 275 TVLHMLVIHF 284 (782)
T ss_pred hHHHHHHHHH
Confidence 9999987774
No 93
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=97.79 E-value=5.9e-06 Score=85.39 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=60.4
Q ss_pred CCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008295 259 GSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (571)
Q Consensus 259 ~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiA 324 (571)
+-|+-+||..||+..||||+.+.+|.||||.|.-=|...|++-|+.+||. +++.++.|.++|..+
T Consensus 76 ahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~-v~icnk~g~tpldka 140 (448)
T KOG0195|consen 76 AHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAA-VNICNKKGMTPLDKA 140 (448)
T ss_pred hcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccce-eeecccCCCCchhhh
Confidence 34569999999999999999999999999999999999999999999999 999999999998654
No 94
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=97.65 E-value=2.2e-05 Score=89.18 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=63.8
Q ss_pred cCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 258 ~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
+..|+..|+++|+.+.|-+++.|..+++|||+||+.|+.+||.+|+..+ |++++..-.+.++||.++.|
T Consensus 57 ~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqh 125 (854)
T KOG0507|consen 57 VLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQH 125 (854)
T ss_pred HhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchhhhh
Confidence 3444599999999999999999999999999999999999999999999 76999999999999999777
No 95
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=97.64 E-value=1e-05 Score=57.01 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=29.4
Q ss_pred cccceEEEEeccCCchHHHHHHHcCCCCCcccC
Q 008295 282 VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLD 314 (571)
Q Consensus 282 ~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD 314 (571)
+|+||||+|++.|+.++++.|++.|++ +++.|
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d 32 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGAD-INARD 32 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSC-TTCBC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCC-CCCCC
Confidence 489999999999999999999999999 77765
No 96
>PHA02792 ankyrin-like protein; Provisional
Probab=97.63 E-value=3.9e-05 Score=87.20 Aligned_cols=51 Identities=6% Similarity=0.027 Sum_probs=47.1
Q ss_pred cCCCchhHhhhcccCCcccccccccccceEEEEec-cCCchHHHHHHHcCCC
Q 008295 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAE-SGGQSTMDVLCQIGLD 308 (571)
Q Consensus 258 ~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~-~g~~~iv~vLlq~Gad 308 (571)
...|+.++|+.|+++||+||.++..+.|+||+|+. +++.++++.|++.|||
T Consensus 80 s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad 131 (631)
T PHA02792 80 SDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIP 131 (631)
T ss_pred HhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCC
Confidence 45689999999999999999999999999999966 6999999999999987
No 97
>PF13606 Ank_3: Ankyrin repeat
Probab=97.56 E-value=1.3e-05 Score=56.09 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=26.9
Q ss_pred cccceEEEEeccCCchHHHHHHHcCCCCCc
Q 008295 282 VQKFRVKLLAESGGQSTMDVLCQIGLDGIR 311 (571)
Q Consensus 282 ~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~ 311 (571)
+|+|+||+|++.|+.++++.|+++|+| ++
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad-vn 29 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGAD-VN 29 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCC-CC
Confidence 489999999999999999999999999 54
No 98
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=97.53 E-value=7.8e-06 Score=63.32 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=36.6
Q ss_pred ccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008295 283 QKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 283 ~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
|.|+||+|++.|+.++++.|++.|+| ++..|.+|.|+||+|....
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g 45 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNG 45 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcc
Confidence 57999999999999999999999999 9999999999999986553
No 99
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=97.46 E-value=1.5e-05 Score=91.84 Aligned_cols=80 Identities=11% Similarity=0.012 Sum_probs=64.1
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccC---------CchHH
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG---------GQSTM 299 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g---------~~~iv 299 (571)
.|.++||+||.-+ +.++|++|++.||++|.+|..|+|+||+|+.++ ...+.
T Consensus 174 ~g~tpL~~Aa~~~--------------------~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~ 233 (743)
T TIGR00870 174 HGESPLNAAACLG--------------------SPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMY 233 (743)
T ss_pred ccccHHHHHHHhC--------------------CHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4567788766544 599999999999999999999999999999986 22356
Q ss_pred HHHHHcCCCC--C----cccCCCCCceeeeecccc
Q 008295 300 DVLCQIGLDG--I----RMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 300 ~vLlq~Gadg--~----~~lD~~gnn~LhiApLe~ 328 (571)
+.+++.|+++ . .+.|.+|.|+||+|..+.
T Consensus 234 ~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g 268 (743)
T TIGR00870 234 NFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEG 268 (743)
T ss_pred HHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcC
Confidence 7777777663 2 467999999999998763
No 100
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=97.41 E-value=0.0029 Score=75.17 Aligned_cols=8 Identities=50% Similarity=1.061 Sum_probs=4.1
Q ss_pred CCCCCCCC
Q 008295 29 YASAPPFS 36 (571)
Q Consensus 29 ~~s~pp~~ 36 (571)
|.|.|-|+
T Consensus 1446 ~~ssp~~s 1453 (1605)
T KOG0260|consen 1446 YSSSPGYS 1453 (1605)
T ss_pred CCCCCCCC
Confidence 44555554
No 101
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.33 E-value=5.8e-05 Score=86.46 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=68.0
Q ss_pred cccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccc-cccceEEEEeccCCchHHHHHHHcCCCCCcccCCC
Q 008295 238 LFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSG-VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPN 316 (571)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~-~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~ 316 (571)
..|+|||+.---+.+ .|-..++|.||.+|++++++|. .|+|+||=|.+.|+.+.+++||..|+. +.+.|++
T Consensus 47 ikD~~GR~alH~~~S-------~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-L~i~Dke 118 (1267)
T KOG0783|consen 47 IKDRYGRTALHIAVS-------ENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-LRIKDKE 118 (1267)
T ss_pred HHHhhccceeeeeec-------cchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc-eEEeccc
Confidence 357788864433333 3347899999999999999997 899999999999999999999999999 9999999
Q ss_pred CCceeeeecc
Q 008295 317 TSRTLRIYPL 326 (571)
Q Consensus 317 gnn~LhiApL 326 (571)
|-.+|.+...
T Consensus 119 glsplq~~~r 128 (1267)
T KOG0783|consen 119 GLSPLQFLSR 128 (1267)
T ss_pred CCCHHHHHhh
Confidence 9988876544
No 102
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=97.24 E-value=9.4e-05 Score=81.48 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=60.3
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008295 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
++..|-.++|+..+.--.|...-+-.|-|+||-|+-.||.+||+.|+++|++ +++.|.+|.|+||-|..-+
T Consensus 557 aaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAASCN 627 (752)
T KOG0515|consen 557 AALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAASCN 627 (752)
T ss_pred hhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhhcC
Confidence 4556666777766666666666677899999999999999999999999999 9999999999999997764
No 103
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.22 E-value=0.00011 Score=85.73 Aligned_cols=103 Identities=17% Similarity=0.111 Sum_probs=82.3
Q ss_pred ccccCcCCCCCCCccccccccCCcccCCCC-----cCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCc
Q 008295 222 EPYGARGTVPKSSNSTLFDDYGRSISFPSA-----KDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQ 296 (571)
Q Consensus 222 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~ 296 (571)
.=+=++..+.+.+-+|.-.-=|-.|.+... +.--.++.+|...++++||..||++|.+|..|+||||.+...|+.
T Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~ 702 (785)
T KOG0521|consen 623 LLVKASSDGECLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHT 702 (785)
T ss_pred HHHHhccCccchhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhccc
Confidence 334455566666555554444555555422 122257889999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCCCCcccCCCCCceeeeec
Q 008295 297 STMDVLCQIGLDGIRMLDPNTSRTLRIYP 325 (571)
Q Consensus 297 ~iv~vLlq~Gadg~~~lD~~gnn~LhiAp 325 (571)
.++.+|+++|++ ..+.|++|..+|+||+
T Consensus 703 ~~~~~ll~~~a~-~~a~~~~~~~~l~~a~ 730 (785)
T KOG0521|consen 703 SIACLLLKRGAD-PNAFDPDGKLPLDIAM 730 (785)
T ss_pred chhhhhcccccc-ccccCccCcchhhHHh
Confidence 999999999999 8899999999999973
No 104
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=97.21 E-value=7.5e-05 Score=52.56 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=29.0
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccc
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSG 281 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~ 281 (571)
+|.|+||||+..+. .+||+.||++||++|.+|.
T Consensus 1 dG~TpLh~A~~~~~--------------------~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGH--------------------PDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTC--------------------HHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHH--------------------HHHHHHHHHCcCCCCCCCC
Confidence 47799999887775 9999999999999999874
No 105
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.20 E-value=8.8e-05 Score=81.75 Aligned_cols=76 Identities=14% Similarity=0.126 Sum_probs=64.8
Q ss_pred CCCccccccccCCcccCCCCcCCCCccCCCchhHhhh-cccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCC
Q 008295 232 KSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRA-VPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGI 310 (571)
Q Consensus 232 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~-Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~ 310 (571)
.+|||+.|.+- ...+.+. +.++.+.|+.+|..|.||||||+..||...+.+|+.+||| +
T Consensus 22 ~~lh~~~~~~~-------------------~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v 81 (560)
T KOG0522|consen 22 KPLHWAVVTTD-------------------SDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-V 81 (560)
T ss_pred cccchhhhccc-------------------hhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-c
Confidence 66999988753 1445554 4567778999999999999999999999999999999999 9
Q ss_pred cccCCCCCceeeeeccc
Q 008295 311 RMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 311 ~~lD~~gnn~LhiApLe 327 (571)
...|.+|+++||.|+--
T Consensus 82 ~~kN~~gWs~L~EAv~~ 98 (560)
T KOG0522|consen 82 SIKNNEGWSPLHEAVST 98 (560)
T ss_pred cccccccccHHHHHHHc
Confidence 99999999999998654
No 106
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.15 E-value=0.0024 Score=73.36 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=20.6
Q ss_pred chhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 262 SSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 262 ~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
+++|--.+|..+-+|-..+..++--.|+- ..+..+.|-+..+.
T Consensus 715 yeeik~~ILevne~vLse~~iqnLik~lP----e~E~l~~L~e~Kae 757 (1102)
T KOG1924|consen 715 YEEIKNVILEVNEDVLSESMIQNLIKHLP----EQEQLNKLSELKAE 757 (1102)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHh
Confidence 45555555555555555555555444443 12344444444433
No 107
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.14 E-value=0.0023 Score=73.42 Aligned_cols=10 Identities=10% Similarity=0.308 Sum_probs=5.8
Q ss_pred cccccccCce
Q 008295 444 KHHCRNCGDI 453 (571)
Q Consensus 444 KHHCR~CG~V 453 (571)
-|||-+-.+|
T Consensus 885 l~hv~kaSrv 894 (1102)
T KOG1924|consen 885 LEHVEKASRV 894 (1102)
T ss_pred HHHHHhhccc
Confidence 4666655555
No 108
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=97.00 E-value=0.00028 Score=83.06 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=66.7
Q ss_pred CccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCccc-CCCCCceeeeecccccc
Q 008295 256 SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRML-DPNTSRTLRIYPLENIT 330 (571)
Q Consensus 256 ~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~l-D~~gnn~LhiApLe~It 330 (571)
++.++|+.++|++||..||.+-.+|..|.++|.||+..||.++|++|+++-++ +.+. |..+.|.|-|+.-...+
T Consensus 763 ~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~-veaQsdrtkdt~lSlacsggr~ 837 (2131)
T KOG4369|consen 763 SACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHAD-VEAQSDRTKDTMLSLACSGGRT 837 (2131)
T ss_pred ccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhh-hhhhcccccCceEEEecCCCcc
Confidence 46788999999999999999999999999999999999999999999999999 7654 88899999998776543
No 109
>PF13606 Ank_3: Ankyrin repeat
Probab=96.90 E-value=0.00025 Score=49.60 Aligned_cols=30 Identities=7% Similarity=-0.006 Sum_probs=26.2
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccc
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDV 278 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~ 278 (571)
.|.|+||+|+..+. .+||+.||++||++|.
T Consensus 1 ~G~T~Lh~A~~~g~--------------------~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGN--------------------IEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCC--------------------HHHHHHHHHcCCCCCC
Confidence 47899999887765 9999999999999984
No 110
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=96.88 E-value=0.00026 Score=77.55 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=64.4
Q ss_pred CccCCCchhHhhhcccCCcccccccc-cccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 256 SSVGSGSSKIVRAVPKVDTHQDVKSG-VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 256 ~~~~~g~~~iVr~Ll~agA~vn~kd~-~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
++|.+|+.++---||.-||++|+-+- .|.||||+||+.|...-+++|.-.||| +.+.|.+|.+++.+|.-.
T Consensus 139 asvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~GmtP~~~AR~~ 210 (669)
T KOG0818|consen 139 SSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSGMTPVDYARQG 210 (669)
T ss_pred HHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCCCcHHHHHHhc
Confidence 58999999999999999999999865 789999999999988889999999999 889999999998776443
No 111
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=96.84 E-value=0.00026 Score=63.00 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=61.8
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccccccc
Q 008295 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRC 332 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~Itr~ 332 (571)
.++.|..+-|+-...+|-+||..= .+.||||+||.-|..+|.+.|+.+||+ ++..|+.|-|+|--|.-|.-++|
T Consensus 9 ~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEGH~~c 82 (117)
T KOG4214|consen 9 NVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEGHRDC 82 (117)
T ss_pred hhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHhhHHH
Confidence 356677888888888898887544 789999999999999999999999999 99999999988877766654444
No 112
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=96.67 E-value=0.0024 Score=69.50 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=67.2
Q ss_pred CCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHHhhhhhhhhcCCccccchHHH
Q 008295 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRLSNAKEMANKPALQSHEDL 506 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~r~~sa~e~~sk~~lqs~e~l 506 (571)
.+..|..|++.|+... |++||..+...--+-....-..+--||.. +..+...+ ...+..+...
T Consensus 78 ~~s~~s~~g~~~n~~~--------~~~~~~~~~~~~d~~n~~~~~~~G~vrS~-~~eF~~~R--------~~rid~~~ve 140 (505)
T KOG1842|consen 78 MVSHDSMCGKLLNENG--------GHIYCRFHLPRYDPENGFWCQSPGAVRSH-FQEFEKFR--------NPRIDKYAVE 140 (505)
T ss_pred cccccccccccccccC--------ccccccccCCCCCCCCCccccCCccHHHh-HHHHHHHh--------cchHHHHHHH
Confidence 4678889999999776 45577777652111111111122233322 11111111 1112222233
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCccccccccccccccccceeccCCCCCccccCCCCCccccccC
Q 008295 507 ARKLQEEMEKNRKSSSGSKSDGSGRRMREVACPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH 571 (571)
Q Consensus 507 aRkL~e~l~~~~~~S~gs~~~~s~~~~K~~~~p~~w~~~~v~Vp~~D~ev~~C~iCqq~F~~~~r 571 (571)
+.+|.-++.++...-. +...+..+++.+..++.| .||++|..|+.|.+.|++++|
T Consensus 141 ~nkLiiRl~rL~~~~~--t~~d~~k~k~~EqsvVpW--------~DDs~V~~CP~Ca~~F~l~rR 195 (505)
T KOG1842|consen 141 TNKLIIRLKRLEEGLP--TEKDSVKRKRLEQSVVPW--------LDDSSVQFCPECANSFGLTRR 195 (505)
T ss_pred HHHHHHHHHHHHccCc--cccchHHHHHHHhccccc--------cCCCcccccccccchhhhHHH
Confidence 3344444444443322 235667778888888889 899999999999999999886
No 113
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.46 E-value=0.00039 Score=79.90 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=60.6
Q ss_pred CCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCC-cccCCCCCceeeeecccc
Q 008295 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGI-RMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 260 ~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~-~~lD~~gnn~LhiApLe~ 328 (571)
.++++|||+|+..|||+|++|..|+|-||+++....-++.+++++.|++-. .+.|.+|-|+|.+|....
T Consensus 250 ~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklG 319 (782)
T KOG3676|consen 250 TNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLG 319 (782)
T ss_pred cCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhh
Confidence 445999999999999999999999999999999877788999999998832 367999999999987763
No 114
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.40 E-value=0.0007 Score=75.45 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=57.1
Q ss_pred ccCCCchhHhhhcccCCcccc----cccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeec
Q 008295 257 SVGSGSSKIVRAVPKVDTHQD----VKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYP 325 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn----~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiAp 325 (571)
++...+...+-+||.+|.++- ..+..|.|+||||+++|++.+..+|+=.|+| +.+.|.+|+++|..|.
T Consensus 631 A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-v~~rda~g~t~l~yar 702 (749)
T KOG0705|consen 631 AVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-VMARDAHGRTALFYAR 702 (749)
T ss_pred HHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-ceecccCCchhhhhHh
Confidence 455556777788888888544 2366789999999999999999999999999 8899999999998773
No 115
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=96.23 E-value=0.0038 Score=56.88 Aligned_cols=51 Identities=25% Similarity=0.707 Sum_probs=40.7
Q ss_pred CccccccCccccCc-cccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHH
Q 008295 428 VSKCTACGTDFSAF-VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVT 485 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~-~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~ 485 (571)
...|..|++.|+++ ++.+-|..|++-||.+|... ...+..-+|..|++...
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-------~~~~~~WlC~vC~k~re 105 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-------SKKEPIWLCKVCQKQRE 105 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-------TSSSCCEEEHHHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc-------CCCCCCEEChhhHHHHH
Confidence 45899999999977 68999999999999999764 23457789999998643
No 116
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=96.17 E-value=0.0025 Score=77.33 Aligned_cols=34 Identities=50% Similarity=1.310 Sum_probs=33.0
Q ss_pred ccCcCCccccccCccccCccccccccccCceeccCC
Q 008295 423 VPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (571)
Q Consensus 423 vpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~C 458 (571)
++|...++|..|+.+|+.|+|+||| ||.|||..|
T Consensus 92 m~d~s~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~ 125 (1598)
T KOG0230|consen 92 MPDSSSKECYDCEQKFETFRRKHHC--CGQIFCSSC 125 (1598)
T ss_pred CCccccchhhhhccchhhhhccccc--CccccCCcc
Confidence 7888899999999999999999999 999999999
No 117
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=95.86 E-value=0.0031 Score=70.49 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=57.0
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008295 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (571)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~G 306 (571)
-|.|-|+||.|+.++. ..+..+||=.|+||-++|.+|.|+|-.|-+.|.++++++|+|.|
T Consensus 658 ~~~grt~LHLa~~~gn--------------------Vvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~g 717 (749)
T KOG0705|consen 658 EGDGRTALHLAARKGN--------------------VVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYG 717 (749)
T ss_pred CCCCcchhhhhhhhcc--------------------hhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcC
Confidence 3567899999887765 89999999999999999999999999999999999999999999
Q ss_pred CC
Q 008295 307 LD 308 (571)
Q Consensus 307 ad 308 (571)
.-
T Consensus 718 cp 719 (749)
T KOG0705|consen 718 CP 719 (749)
T ss_pred CC
Confidence 76
No 118
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=95.82 E-value=0.0055 Score=72.73 Aligned_cols=98 Identities=16% Similarity=0.069 Sum_probs=65.5
Q ss_pred CCCCCCcccccccc---CCcccCCCCcCC------------CCccCCCchhHhhhcccCCcccccccccccceEEEEecc
Q 008295 229 TVPKSSNSTLFDDY---GRSISFPSAKDS------------RSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAES 293 (571)
Q Consensus 229 ~~~~~~~~a~~~~~---~~~~~~~~~~~~------------~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~ 293 (571)
||-|+|+-+|--+| ||-+.-.++..+ -.+|.-|+.+.|+.||..+|-|.+++..|.|+|-||+..
T Consensus 958 tgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~G 1037 (2131)
T KOG4369|consen 958 TGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAG 1037 (2131)
T ss_pred cCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccC
Confidence 55667776665544 555444433321 135666777777777777777777777777788777777
Q ss_pred CCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 294 GGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 294 g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
|+...|.+|++.++| .+..|..+++.+..+..+
T Consensus 1038 g~lss~~il~~~~ad-~d~qdnr~~S~~maafRK 1070 (2131)
T KOG4369|consen 1038 GALSSCPILVSSVAD-ADQQDNRTNSRTMAAFRK 1070 (2131)
T ss_pred CccccchHHhhcccC-hhhhhcccccccHHHHHh
Confidence 777777778887777 777777777666555444
No 119
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.65 E-value=0.22 Score=55.38 Aligned_cols=9 Identities=44% Similarity=0.789 Sum_probs=3.7
Q ss_pred cCCCCCCCC
Q 008295 12 QYPNPNPNP 20 (571)
Q Consensus 12 ~~~~p~p~p 20 (571)
|+.-|.|.|
T Consensus 316 q~~~P~PPP 324 (569)
T KOG3671|consen 316 QKKRPPPPP 324 (569)
T ss_pred ccCCCCCcC
Confidence 444443333
No 120
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=95.50 E-value=0.0098 Score=65.43 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=59.3
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHH-cCCCCCcccCCCCCceeeee
Q 008295 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQ-IGLDGIRMLDPNTSRTLRIY 324 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq-~Gadg~~~lD~~gnn~LhiA 324 (571)
++..|+...+|.+.+-|.|.+.+|-+-.|+||+||.+|+.+++..|++ .+++ .+..|.=|+++|.-|
T Consensus 513 aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~-~~~kDRw~rtPlDdA 580 (622)
T KOG0506|consen 513 AAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD-PDPKDRWGRTPLDDA 580 (622)
T ss_pred hhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCC-CChhhccCCCcchHh
Confidence 456788999999999999999999999999999999999999999998 5677 778888888887554
No 121
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=95.08 E-value=0.0067 Score=66.95 Aligned_cols=60 Identities=8% Similarity=0.023 Sum_probs=52.1
Q ss_pred CcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHc
Q 008295 226 ARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI 305 (571)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~ 305 (571)
--++|.|+||.||.- |...-|++|+..|||++..|..|.||+.+|-..||.++.+-|+++
T Consensus 163 hpekg~TpLHvAAk~--------------------Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 163 HPEKGNTPLHVAAKA--------------------GQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVEI 222 (669)
T ss_pred CcccCCchhHHHHhc--------------------cchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence 346789999997654 458889999999999999999999999999999999888777763
No 122
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=95.01 E-value=0.0048 Score=64.38 Aligned_cols=69 Identities=12% Similarity=0.051 Sum_probs=58.5
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccccc
Q 008295 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENI 329 (571)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~I 329 (571)
|+..-...||+---+||.+|-.|-++|--||++|+.++|++|++.|+|=..-.+..++|+||+|.|...
T Consensus 23 ndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn 91 (396)
T KOG1710|consen 23 NDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN 91 (396)
T ss_pred CcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence 345666777776556999999999999999999999999999999999334668899999999999853
No 123
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=94.72 E-value=0.81 Score=51.11 Aligned_cols=7 Identities=43% Similarity=0.691 Sum_probs=2.9
Q ss_pred cCCCCCC
Q 008295 12 QYPNPNP 18 (571)
Q Consensus 12 ~~~~p~p 18 (571)
||++..+
T Consensus 298 k~~~~~~ 304 (569)
T KOG3671|consen 298 KNPNGLP 304 (569)
T ss_pred cCCCCCc
Confidence 4444433
No 124
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=94.72 E-value=0.0076 Score=64.81 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=49.5
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
+..+|+.+.||.|+.-|+.||.+|.--..||-+|+--||..+|.+|+|+||=
T Consensus 43 acR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi 94 (516)
T KOG0511|consen 43 ACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI 94 (516)
T ss_pred HhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence 5678999999999999999999999999999999999999999999999975
No 125
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=94.71 E-value=0.012 Score=68.26 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=45.3
Q ss_pred cccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCC-CCCceeeeec
Q 008295 276 QDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDP-NTSRTLRIYP 325 (571)
Q Consensus 276 vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~-~gnn~LhiAp 325 (571)
.|++|..|.|+|||++-.+..++++-|+|+|+| +.+.|. .|.++||.|-
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-v~vqD~ESG~taLHRai 94 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-VFVQDEESGYTALHRAI 94 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCce-eeeccccccchHhhHhh
Confidence 789999999999999999999999999999999 888886 7999999863
No 126
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=94.26 E-value=0.02 Score=67.87 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=47.5
Q ss_pred CCchhHhhhc-ccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCc
Q 008295 260 SGSSKIVRAV-PKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSR 319 (571)
Q Consensus 260 ~g~~~iVr~L-l~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn 319 (571)
.+..+.+.+| +.+|..++++|..|+||||||+..|+..++..|++.|++.--++|+.-.+
T Consensus 617 ~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~ 677 (975)
T KOG0520|consen 617 ALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPET 677 (975)
T ss_pred hcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCC
Confidence 3334444444 46788899999999999999999999999999999998855567775444
No 127
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=93.49 E-value=0.011 Score=66.02 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=53.8
Q ss_pred ccCCCchhHhhhcccCCcc--cccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008295 257 SVGSGSSKIVRAVPKVDTH--QDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~--vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiA 324 (571)
+|.+|+.+|||.||.+|-. .+..|..|.|.||-||-.++..++.+|++.|+. +.-.|..|.|+...|
T Consensus 906 a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagas-l~ktd~kg~tp~era 974 (1004)
T KOG0782|consen 906 AAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGAS-LRKTDSKGKTPQERA 974 (1004)
T ss_pred HHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchh-heecccCCCChHHHH
Confidence 5667788999999888863 345677889999998888888889999999998 878888888776443
No 128
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=93.48 E-value=0.016 Score=57.43 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=47.4
Q ss_pred CcccccccccccceEEEEeccCCchHHHHHHHcC-CCCCcccCCCCCceeeee
Q 008295 273 DTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG-LDGIRMLDPNTSRTLRIY 324 (571)
Q Consensus 273 gA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~G-adg~~~lD~~gnn~LhiA 324 (571)
+-++|++|..|+|+|.+||..|.-+.|..|++.| ++ +.+.|.++..++.||
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~-vgv~d~ssldaaqla 53 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF-VGVTDESSLDAAQLA 53 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccc-ccccccccchHHHHH
Confidence 5679999999999999999999999999999999 66 999999999998887
No 129
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=93.37 E-value=0.021 Score=63.57 Aligned_cols=54 Identities=7% Similarity=0.063 Sum_probs=45.8
Q ss_pred CCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHH
Q 008295 231 PKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQ 304 (571)
Q Consensus 231 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq 304 (571)
.|+||.|.+- |+..-++.||.|||++-++|+.|+++||-|+-.|+..|+..++.
T Consensus 56 ~TpLhlAV~L--------------------g~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr 109 (560)
T KOG0522|consen 56 RTPLHLAVRL--------------------GHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLR 109 (560)
T ss_pred CccHHHHHHh--------------------cCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHH
Confidence 7899996654 45999999999999999999999999999999998866544443
No 130
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=92.46 E-value=0.046 Score=64.32 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=51.2
Q ss_pred ccCCcccccc--cccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccccc
Q 008295 270 PKVDTHQDVK--SGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENIT 330 (571)
Q Consensus 270 l~agA~vn~k--d~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~It 330 (571)
+.+|+++|.. -..|.|.||+|...+...+++.|+++|++ +++.|..|+++||++..+..+
T Consensus 641 ~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~ 702 (785)
T KOG0521|consen 641 LAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHT 702 (785)
T ss_pred hcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhccc
Confidence 4556666653 34779999999999999999999999999 999999999999999887654
No 131
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=92.34 E-value=0.031 Score=34.70 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.7
Q ss_pred ccceEEEEeccCCchHHHHHHHcCCC
Q 008295 283 QKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 283 ~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
++|+||+|++.++.++++.|++.|.+
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~ 27 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGAD 27 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 68899999999999999999999886
No 132
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=91.71 E-value=6.1 Score=43.70 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=8.3
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 008295 85 SLSSFNPIPPQQFPPYDS 102 (571)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~ 102 (571)
.+-.++|+.+++..||.-
T Consensus 345 sp~~pppp~pp~~~p~~~ 362 (518)
T KOG1830|consen 345 SPIVPPPPSPPSTIPFVE 362 (518)
T ss_pred CCCCCCCCCCCCCCCCcc
Confidence 334444444455555443
No 133
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=91.57 E-value=0.077 Score=63.49 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=46.9
Q ss_pred CCCCCCccCcCCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHH
Q 008295 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (571)
Q Consensus 417 ~~~~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (571)
+.+..|++|..+..|+.|.+.|.++.+||||| |++| . . ..+.+..|+|..|.+.+..
T Consensus 646 e~ksVw~aDg~aPng~la~t~~~~~~e~~hsr--~~ls--~--------~-~~s~~~~~~~n~t~s~~rn 702 (1287)
T KOG1841|consen 646 EVKSVWFADGIAPNGELAETRFTFTGERHHSR--GKLS--L--------L-YSSRKEARPCNITHSVLRN 702 (1287)
T ss_pred eecceeccCCcCCCceecccceeeeccccccc--cccc--c--------c-ccccccCCCCcccCccchh
Confidence 56889999999999999999999999999999 8887 1 1 1133566999999986644
No 134
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=89.81 E-value=0.099 Score=52.05 Aligned_cols=59 Identities=10% Similarity=0.014 Sum_probs=52.6
Q ss_pred CCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCC-cccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVD-THQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~ag-A~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
|||+||+||-.+. .+.|..||.+| |.|-+.|..+.+.+.||-+.|+...|..|-++--+
T Consensus 12 gWTalmcaa~eg~--------------------~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e 71 (223)
T KOG2384|consen 12 GWTALMCAAMEGS--------------------NEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE 71 (223)
T ss_pred cchHHHHHhhhcc--------------------hhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence 6899999776554 88999999999 89999999999999999999999999999988554
No 135
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.29 E-value=0.017 Score=62.58 Aligned_cols=65 Identities=23% Similarity=0.593 Sum_probs=53.9
Q ss_pred CCCccCcCCccccccCccccCccccccccc--cCceeccCCCCCcEeccCCCCCCceeeccccHHHHHH
Q 008295 420 DHWVPDEAVSKCTACGTDFSAFVRKHHCRN--CGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (571)
Q Consensus 420 ~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~--CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (571)
-.|.=+.++..|..|-..|..+.-+-||-+ |++|||-.|++-. ++..-+.++.+||+.|+..+..
T Consensus 460 le~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~Kat--vp~l~~e~~akv~rlq~eL~~s 526 (542)
T KOG0993|consen 460 LEWQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMNCLKAT--VPSLPNERPAKVCRLQHELLNS 526 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHHhh--cccccccchHHHHHHHHHHhhh
Confidence 457767778999999999999998999988 9999999998754 4545567889999999987653
No 136
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=89.14 E-value=0.11 Score=52.22 Aligned_cols=62 Identities=29% Similarity=0.620 Sum_probs=37.9
Q ss_pred cCcCCccccccCccccC---cc---------ccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHHh
Q 008295 424 PDEAVSKCTACGTDFSA---FV---------RKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQR 487 (571)
Q Consensus 424 pD~~~~~C~~C~~~Fsl---~~---------RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~r 487 (571)
.|.+.-.|..|++.|++ ++ |||-|+.||+.|=+.---++- .....+.+|. -|..|-+.+++|
T Consensus 113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh-~rthtgvrpy-kc~~c~kaftqr 186 (267)
T KOG3576|consen 113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRH-TRTHTGVRPY-KCSLCEKAFTQR 186 (267)
T ss_pred CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhh-hccccCcccc-chhhhhHHHHhh
Confidence 45567899999999985 22 588999999998553211111 1111122232 478887766654
No 137
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.26 E-value=0.35 Score=55.51 Aligned_cols=53 Identities=17% Similarity=0.312 Sum_probs=38.0
Q ss_pred ccccccCccccCccccccccccC-ceeccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCG-DIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG-~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
++|..|-..|++..+.|+|++|| .|+|.-|++-.+-+-.. ....+|+|..=..
T Consensus 55 ~h~np~~~~~~~~~~d~cvkn~G~gv~~ei~tre~m~~~~~-~l~~~~~~e~v~~ 108 (634)
T KOG1818|consen 55 DHENPNVQLFTLKLTDHCVKNCGHGVHCEIATREFMDLLKS-LLESQRIHEEVKN 108 (634)
T ss_pred hccCCCcccchhhhHHHHHhcCCcchhHHHHHHHHHHHHHh-hhccccccchHHH
Confidence 37888999999999999999999 88898888766543321 1234455554444
No 138
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.07 E-value=0.74 Score=42.19 Aligned_cols=54 Identities=19% Similarity=0.471 Sum_probs=37.4
Q ss_pred CCCccCcCCccccccCccccCc----------cccccccccCceeccCCCCCcEeccCCCCCCceeeccccH
Q 008295 420 DHWVPDEAVSKCTACGTDFSAF----------VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCM 481 (571)
Q Consensus 420 ~~WvpD~~~~~C~~C~~~Fsl~----------~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy 481 (571)
..|........|..|++.|... ..|.-|..|..+||.+|-.+. ++.+..|-.|.
T Consensus 47 v~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fi--------He~Lh~CPGC~ 110 (112)
T TIGR00622 47 IPLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFV--------HESLHCCPGCI 110 (112)
T ss_pred ccccccCCCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhh--------hhhccCCcCCC
Confidence 4565544456799999999742 447789999999999995421 23455566553
No 139
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.55 E-value=0.26 Score=53.97 Aligned_cols=32 Identities=22% Similarity=0.567 Sum_probs=24.0
Q ss_pred CCccccccCccccCccccccccccCceeccCCCCCc
Q 008295 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~ 462 (571)
....|.+|...|..- ---.||+.||..|....
T Consensus 25 ~~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~ 56 (397)
T TIGR00599 25 TSLRCHICKDFFDVP----VLTSCSHTFCSLCIRRC 56 (397)
T ss_pred cccCCCcCchhhhCc----cCCCCCCchhHHHHHHH
Confidence 356899999877532 23589999999997643
No 140
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=85.10 E-value=0.52 Score=35.24 Aligned_cols=27 Identities=30% Similarity=0.929 Sum_probs=21.1
Q ss_pred ccccCccccCccccccccccCceeccCCC
Q 008295 431 CTACGTDFSAFVRKHHCRNCGDIFCDKCT 459 (571)
Q Consensus 431 C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS 459 (571)
|..|+++-.++ -..|+.||++||.++-
T Consensus 1 C~~C~~~~~l~--~f~C~~C~~~FC~~HR 27 (39)
T smart00154 1 CHFCRKKVGLT--GFKCRHCGNLFCGEHR 27 (39)
T ss_pred CcccCCccccc--CeECCccCCccccccC
Confidence 66788765554 5789999999998763
No 141
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=83.36 E-value=0.41 Score=53.49 Aligned_cols=62 Identities=10% Similarity=0.078 Sum_probs=52.1
Q ss_pred hhHhhhcccCCccccc------ccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeec
Q 008295 263 SKIVRAVPKVDTHQDV------KSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYP 325 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~------kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiAp 325 (571)
.+.|+.|.+.++..|+ ++.+--|+||.||..|....|..||++|+| .-+.|..|.|+--++.
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc
Confidence 4556677788888874 455678999999999999999999999999 7799999999987764
No 142
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=82.22 E-value=0.37 Score=38.31 Aligned_cols=44 Identities=23% Similarity=0.594 Sum_probs=25.7
Q ss_pred cccccCccccCc------cccccccccCceeccCCCCCcEeccCCCCCCceeeccccH
Q 008295 430 KCTACGTDFSAF------VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCM 481 (571)
Q Consensus 430 ~C~~C~~~Fsl~------~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy 481 (571)
.|..|.+.|... ..+..|..|+.+||.+|=.+ .++.+..|-.|.
T Consensus 1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f--------iHE~LH~CPGC~ 50 (51)
T PF07975_consen 1 YCFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVF--------IHETLHNCPGCE 50 (51)
T ss_dssp EETTTTEE-TTS-------EEE--TTTT--B-HHHHHT--------TTTTS-SSSTT-
T ss_pred CCccCCCCCCCcccccccCCeEECCCCCCccccCcChh--------hhccccCCcCCC
Confidence 488999999876 36899999999999999432 234566666663
No 143
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.68 E-value=42 Score=41.17 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=9.5
Q ss_pred HHHHHHHcCCCCCcccCCCCCcee
Q 008295 298 TMDVLCQIGLDGIRMLDPNTSRTL 321 (571)
Q Consensus 298 iv~vLlq~Gadg~~~lD~~gnn~L 321 (571)
+.+.|+++..- ..|+...+.|
T Consensus 954 ~~e~~~~r~~a---~~~~~~krkl 974 (1049)
T KOG0307|consen 954 FLEELLQRCSA---RTDPQTKRKL 974 (1049)
T ss_pred HHHHHHHHhhc---cCCHHHHHHH
Confidence 34444444332 3455554444
No 144
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=80.61 E-value=0.38 Score=50.49 Aligned_cols=29 Identities=31% Similarity=0.941 Sum_probs=21.9
Q ss_pred CccccccCccccCccccccc-cccCceeccCCCCC
Q 008295 428 VSKCTACGTDFSAFVRKHHC-RNCGDIFCDKCTHG 461 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHC-R~CG~VfC~~CS~~ 461 (571)
...|.+|...|.. -| -.||+.||..|.+.
T Consensus 25 ~lrC~IC~~~i~i-----p~~TtCgHtFCslCIR~ 54 (391)
T COG5432 25 MLRCRICDCRISI-----PCETTCGHTFCSLCIRR 54 (391)
T ss_pred HHHhhhhhheeec-----ceecccccchhHHHHHH
Confidence 5689999887753 22 37999999999754
No 145
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=79.73 E-value=0.95 Score=54.27 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=55.7
Q ss_pred CCCCCceEEe-eCC----ccccccCcC--------CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCC
Q 008295 207 DGYGDGVYAY-EGG----KLEPYGARG--------TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVD 273 (571)
Q Consensus 207 ~~~~~~~~~~-~~~----~~~~~~~~~--------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~ag 273 (571)
|.-|.||+-+ -++ .+.||.+-| .|+|+||||||.+- +++|..|+..|
T Consensus 605 d~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~--------------------e~l~a~l~~lg 664 (975)
T KOG0520|consen 605 DRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGR--------------------EKLVASLIELG 664 (975)
T ss_pred cccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCH--------------------HHHHHHHHHhc
Confidence 3345566655 222 345665544 58999999998775 99999999988
Q ss_pred cccccc-c-----ccccceEEEEeccCCchHHHHHHHc
Q 008295 274 THQDVK-S-----GVQKFRVKLLAESGGQSTMDVLCQI 305 (571)
Q Consensus 274 A~vn~k-d-----~~~kTpLHlaa~~g~~~iv~vLlq~ 305 (571)
|+-++. | ..|+|+-.||..+|+..|...|-+.
T Consensus 665 a~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 665 ADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred cccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 877754 3 3567777888888888877666653
No 146
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=79.55 E-value=0.93 Score=43.64 Aligned_cols=26 Identities=35% Similarity=0.855 Sum_probs=20.1
Q ss_pred ccccccCcccc------------CccccccccccCcee
Q 008295 429 SKCTACGTDFS------------AFVRKHHCRNCGDIF 454 (571)
Q Consensus 429 ~~C~~C~~~Fs------------l~~RKHHCR~CG~Vf 454 (571)
+.|..|+..++ ..+|+++|..||+-|
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f 38 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRF 38 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcc
Confidence 36889987772 355679999999987
No 147
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=79.16 E-value=1.1 Score=32.82 Aligned_cols=26 Identities=31% Similarity=0.834 Sum_probs=20.3
Q ss_pred ccccccCccccCc-------cccccccccCcee
Q 008295 429 SKCTACGTDFSAF-------VRKHHCRNCGDIF 454 (571)
Q Consensus 429 ~~C~~C~~~Fsl~-------~RKHHCR~CG~Vf 454 (571)
-.|..|+++|.+- .++.-|.+||.+|
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 3689999999763 3578888888876
No 148
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=78.61 E-value=0.91 Score=36.99 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=13.1
Q ss_pred CCCCCccccCCCCCccccccC
Q 008295 551 SSGSETIECGVCQHPFLVSAH 571 (571)
Q Consensus 551 ~~D~ev~~C~iCqq~F~~~~r 571 (571)
.+|+++..|.+|++.|+++.|
T Consensus 4 ~~d~~~~~C~~C~~~F~~~~r 24 (69)
T PF01363_consen 4 VPDSEASNCMICGKKFSLFRR 24 (69)
T ss_dssp SSGGG-SB-TTT--B-BSSS-
T ss_pred CCCCCCCcCcCcCCcCCCcee
Confidence 569999999999999998765
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.45 E-value=42 Score=41.14 Aligned_cols=7 Identities=14% Similarity=0.007 Sum_probs=2.9
Q ss_pred ccceEEE
Q 008295 283 QKFRVKL 289 (571)
Q Consensus 283 ~kTpLHl 289 (571)
+.++|++
T Consensus 925 ~~~~~~~ 931 (1049)
T KOG0307|consen 925 QPAPLQS 931 (1049)
T ss_pred CCCCccc
Confidence 3344443
No 150
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=75.20 E-value=1.7 Score=31.94 Aligned_cols=26 Identities=38% Similarity=0.879 Sum_probs=20.4
Q ss_pred ccccccCccccCc-------cccccccccCcee
Q 008295 429 SKCTACGTDFSAF-------VRKHHCRNCGDIF 454 (571)
Q Consensus 429 ~~C~~C~~~Fsl~-------~RKHHCR~CG~Vf 454 (571)
..|..|++.|.+- .++..|-+||.+|
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF 35 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence 4699999998763 4578888888876
No 151
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.15 E-value=38 Score=40.59 Aligned_cols=15 Identities=20% Similarity=0.508 Sum_probs=11.2
Q ss_pred CCCCceeeccccHHH
Q 008295 469 ANAQPVRVCDRCMAE 483 (571)
Q Consensus 469 ~~~~pvRVC~~Cy~~ 483 (571)
.+.+.+||=..|.-.
T Consensus 603 ~GERRIRV~T~~lpt 617 (887)
T KOG1985|consen 603 KGERRIRVHTLCLPT 617 (887)
T ss_pred CCceeEEEEEeeccc
Confidence 345778998889874
No 152
>KOG3173 consensus Predicted Zn-finger protein [General function prediction only]
Probab=72.52 E-value=1.8 Score=42.26 Aligned_cols=28 Identities=29% Similarity=0.818 Sum_probs=23.9
Q ss_pred CccccccCccccCccccccccccCceeccCC
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~C 458 (571)
...|..|+++-+++. .||| ||.+||..+
T Consensus 105 ~~rC~~C~kk~gltg--f~Cr-CG~~fC~~H 132 (167)
T KOG3173|consen 105 KKRCFKCRKKVGLTG--FKCR-CGNTFCGTH 132 (167)
T ss_pred chhhhhhhhhhcccc--cccc-cCCcccccc
Confidence 456999998888877 8997 999999876
No 153
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.39 E-value=0.6 Score=49.12 Aligned_cols=48 Identities=29% Similarity=0.807 Sum_probs=40.5
Q ss_pred CCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
...+|..|+..|..+.+||-|--|-+-||.-|+... .-.|.|..|...
T Consensus 43 ~~p~ckacg~~f~~~~~k~~c~dckk~fc~tcs~v~---------~~lr~c~~c~r~ 90 (350)
T KOG4275|consen 43 QAPHCKACGEEFEDAQSKSDCEDCKKEFCATCSRVS---------ISLRTCTSCRRV 90 (350)
T ss_pred ccchhhhhchhHhhhhhhhhhhhhhHHHHHHHHHhc---------ccchhhhHHHHH
Confidence 356899999999999999999999999999999322 246889999864
No 154
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.21 E-value=0.59 Score=46.01 Aligned_cols=48 Identities=25% Similarity=0.670 Sum_probs=32.3
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVT 485 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~ 485 (571)
.-.|.+|-..|+-. -----+||+|||..|.+.-+ +..++|-.|.+.+.
T Consensus 131 ~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~al--------k~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 131 TYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDAL--------KNTNKCPTCRKKIT 178 (187)
T ss_pred ccCCCceecchhhc--cccccccchhHHHHHHHHHH--------HhCCCCCCcccccc
Confidence 45677776655422 11446899999999976433 34578999987554
No 155
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=71.60 E-value=18 Score=42.85 Aligned_cols=11 Identities=45% Similarity=0.181 Sum_probs=4.9
Q ss_pred CCCCCCCCCCC
Q 008295 24 LQPRSYASAPP 34 (571)
Q Consensus 24 ~~~~~~~s~pp 34 (571)
+..-+.|||=+
T Consensus 263 la~gs~asA~~ 273 (830)
T KOG1923|consen 263 LALGSLASACD 273 (830)
T ss_pred hhhhhhhhhcc
Confidence 33334455544
No 156
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=71.17 E-value=2.7 Score=38.29 Aligned_cols=27 Identities=30% Similarity=0.833 Sum_probs=21.8
Q ss_pred CccccccCccccCcccc-ccccccCcee
Q 008295 428 VSKCTACGTDFSAFVRK-HHCRNCGDIF 454 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RK-HHCR~CG~Vf 454 (571)
...|..|+++|=-++|. .+|-+||.+|
T Consensus 9 KR~Cp~CG~kFYDLnk~PivCP~CG~~~ 36 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNKDPIVCPKCGTEF 36 (108)
T ss_pred cccCCCCcchhccCCCCCccCCCCCCcc
Confidence 34899999999877664 5699999887
No 157
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=69.15 E-value=1.9 Score=48.16 Aligned_cols=50 Identities=10% Similarity=0.103 Sum_probs=41.0
Q ss_pred ccCCCchhHhhhcc-cCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008295 257 SVGSGSSKIVRAVP-KVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll-~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~G 306 (571)
+|+-|++++|+.|| ..+.+.+.+|.-+.|||--|..-+|.+++.+|-+.-
T Consensus 546 AAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 546 AAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQ 596 (622)
T ss_pred ecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHh
Confidence 34445599999998 568899999999999999999999988777766643
No 158
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=67.80 E-value=3.3 Score=38.84 Aligned_cols=27 Identities=22% Similarity=0.408 Sum_probs=21.8
Q ss_pred CccccccCccccCcc-ccccccccCcee
Q 008295 428 VSKCTACGTDFSAFV-RKHHCRNCGDIF 454 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~-RKHHCR~CG~Vf 454 (571)
...|..|+++|=-++ +-.+|-+||.+|
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~~~ 36 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGEQF 36 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCCcc
Confidence 348999999997665 468899999876
No 159
>PHA02768 hypothetical protein; Provisional
Probab=66.67 E-value=2.4 Score=34.27 Aligned_cols=25 Identities=36% Similarity=0.741 Sum_probs=17.8
Q ss_pred cccccCccccCc------cccc----cccccCcee
Q 008295 430 KCTACGTDFSAF------VRKH----HCRNCGDIF 454 (571)
Q Consensus 430 ~C~~C~~~Fsl~------~RKH----HCR~CG~Vf 454 (571)
.|..|++.|+.. .|+| .|-.||++|
T Consensus 7 ~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f 41 (55)
T PHA02768 7 ECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRIS 41 (55)
T ss_pred CcchhCCeeccHHHHHHHHHhcCCcccCCccccee
Confidence 799999999752 2344 477777776
No 160
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=64.88 E-value=1.7 Score=32.63 Aligned_cols=33 Identities=30% Similarity=0.781 Sum_probs=23.5
Q ss_pred cccccCccccCccccccccccCceeccCCCCCcE
Q 008295 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i 463 (571)
+|..|.+.| .-.++-.=-.||.+||..|.....
T Consensus 1 ~C~~C~~~~-~~~~~~~l~~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 1 HCNICFEKY-SEERRPRLTSCGHIFCEKCLKKLK 33 (44)
T ss_pred CCcCcCccc-cCCCCeEEcccCCHHHHHHHHhhc
Confidence 478888888 223334445899999999987554
No 161
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=64.72 E-value=5.1 Score=31.38 Aligned_cols=33 Identities=27% Similarity=0.592 Sum_probs=20.3
Q ss_pred Cccccc--cCccccCccc----cccccccCceeccCCCC
Q 008295 428 VSKCTA--CGTDFSAFVR----KHHCRNCGDIFCDKCTH 460 (571)
Q Consensus 428 ~~~C~~--C~~~Fsl~~R----KHHCR~CG~VfC~~CS~ 460 (571)
...|.. |+..|..... ...|..||..||..|..
T Consensus 18 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 56 (64)
T PF01485_consen 18 IRWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGE 56 (64)
T ss_dssp CC--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTS
T ss_pred ccCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCc
Confidence 457865 8887765433 26899999999999965
No 162
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=64.27 E-value=1.5e+02 Score=32.61 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=6.4
Q ss_pred CCchHHHHHHH
Q 008295 294 GGQSTMDVLCQ 304 (571)
Q Consensus 294 g~~~iv~vLlq 304 (571)
++.+-|+||+.
T Consensus 409 ~~DdRCrvLis 419 (498)
T KOG4849|consen 409 GHDDRCRVLIS 419 (498)
T ss_pred ccchHHHHHHH
Confidence 44455777665
No 163
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.74 E-value=5.5 Score=37.85 Aligned_cols=52 Identities=29% Similarity=0.738 Sum_probs=38.4
Q ss_pred CccccccC-ccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHH
Q 008295 428 VSKCTACG-TDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (571)
Q Consensus 428 ~~~C~~C~-~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l 484 (571)
...|.+|. ++|---. -|+|..|---||..|-- ++.|. +.+-.-||+.|-+..
T Consensus 65 datC~IC~KTKFADG~-GH~C~YCq~r~CARCGG-rv~lr---sNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 65 DATCGICHKTKFADGC-GHNCSYCQTRFCARCGG-RVSLR---SNKVMWVCNLCRKQQ 117 (169)
T ss_pred Ccchhhhhhccccccc-CcccchhhhhHHHhcCC-eeeec---cCceEEeccCCcHHH
Confidence 34899996 5665443 49999999999999964 44443 356678999998753
No 164
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=61.88 E-value=7.5 Score=41.50 Aligned_cols=56 Identities=25% Similarity=0.548 Sum_probs=36.1
Q ss_pred CccccccCcc--ccC-------ccccccccccC------ceeccCCCCCcEeccC-----CCCCCceeeccccHHHH
Q 008295 428 VSKCTACGTD--FSA-------FVRKHHCRNCG------DIFCDKCTHGRIALTA-----DANAQPVRVCDRCMAEV 484 (571)
Q Consensus 428 ~~~C~~C~~~--Fsl-------~~RKHHCR~CG------~VfC~~CS~~~i~Lp~-----~~~~~pvRVC~~Cy~~l 484 (571)
...|..|+.. .++ -.|.-||-.|+ ++-|..|-..+ .|.. ......+-+|+.|..=+
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~-~l~y~~~~~~~~~~r~e~C~~C~~Yl 262 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQSG-KLHYWSLDSEQAAVKAESCGDCGTYL 262 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCCC-ceeeeeecCCCcceEeeecccccccc
Confidence 4689999865 232 24788999998 46788887642 2221 11234567999998644
No 165
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.14 E-value=2.5 Score=44.94 Aligned_cols=33 Identities=21% Similarity=0.594 Sum_probs=22.9
Q ss_pred ccccccCcc--ccCccc-cccccccCceeccCCCCCcE
Q 008295 429 SKCTACGTD--FSAFVR-KHHCRNCGDIFCDKCTHGRI 463 (571)
Q Consensus 429 ~~C~~C~~~--Fsl~~R-KHHCR~CG~VfC~~CS~~~i 463 (571)
..|..|.+. ++.-.+ .++ .||+.||..|....+
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~ 39 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLF 39 (309)
T ss_pred CCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHh
Confidence 479999874 333222 344 899999999987543
No 166
>PF12773 DZR: Double zinc ribbon
Probab=61.02 E-value=5.7 Score=30.37 Aligned_cols=27 Identities=33% Similarity=0.678 Sum_probs=19.4
Q ss_pred CCccccccCcccc-CccccccccccCce
Q 008295 427 AVSKCTACGTDFS-AFVRKHHCRNCGDI 453 (571)
Q Consensus 427 ~~~~C~~C~~~Fs-l~~RKHHCR~CG~V 453 (571)
++..|..|++.+. .......|..||..
T Consensus 11 ~~~fC~~CG~~l~~~~~~~~~C~~Cg~~ 38 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPPDQSKKICPNCGAE 38 (50)
T ss_pred cccCChhhcCChhhccCCCCCCcCCcCC
Confidence 4778999998877 23446678888774
No 167
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=60.14 E-value=1.1 Score=52.18 Aligned_cols=47 Identities=30% Similarity=0.817 Sum_probs=33.0
Q ss_pred cCCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 426 EAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 426 ~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
+..-.|..|..++--. -=-+||++||..|...+. ....|-|-.|-..
T Consensus 641 K~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~-------etRqRKCP~Cn~a 687 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRY-------ETRQRKCPKCNAA 687 (698)
T ss_pred HhceeCCCccCchhhH----HHHhcchHHHHHHHHHHH-------HHhcCCCCCCCCC
Confidence 3457899998766421 113799999999987654 2457889999653
No 168
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.25 E-value=4.3 Score=40.10 Aligned_cols=24 Identities=25% Similarity=0.791 Sum_probs=19.7
Q ss_pred cccCccccccccccCc---eeccCCCC
Q 008295 437 DFSAFVRKHHCRNCGD---IFCDKCTH 460 (571)
Q Consensus 437 ~Fsl~~RKHHCR~CG~---VfC~~CS~ 460 (571)
.|..+.+||+|++||. +||-.|+-
T Consensus 8 ~~d~ieGRs~C~~C~~SRkFfCY~C~V 34 (230)
T KOG3795|consen 8 SFDPIEGRSTCPGCKSSRKFFCYDCRV 34 (230)
T ss_pred ccCcccccccCCCCCCcceEEEEeecc
Confidence 4667788999999985 69999974
No 170
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.96 E-value=2.8 Score=47.10 Aligned_cols=52 Identities=29% Similarity=0.540 Sum_probs=37.7
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (571)
-..|.+|-..+.+-.|- .||+|||..|.-+-+... ..+.-+-|-.|+..+..
T Consensus 186 ~~~CPICL~~~~~p~~t----~CGHiFC~~CiLqy~~~s---~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRT----NCGHIFCGPCILQYWNYS---AIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCccccc----ccCceeeHHHHHHHHhhh---cccCCccCCchhhhccc
Confidence 35899998877765554 399999999986554433 24556889999997644
No 171
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=58.61 E-value=3 Score=31.02 Aligned_cols=34 Identities=21% Similarity=0.571 Sum_probs=24.7
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcE
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i 463 (571)
+.|.+|...|.......-.. ||.+||..|....+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~ 34 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWL 34 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHH
Confidence 36999999987644444444 99999999976544
No 172
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=56.79 E-value=3.9 Score=41.98 Aligned_cols=42 Identities=24% Similarity=0.566 Sum_probs=27.8
Q ss_pred cccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
+|..|.+.=+ -...+=-.|++|||..|...-. -++|..|.+.
T Consensus 5 hCn~C~~~~~--~~~f~LTaC~HvfC~~C~k~~~----------~~~C~lCkk~ 46 (233)
T KOG4739|consen 5 HCNKCFRFPS--QDPFFLTACRHVFCEPCLKASS----------PDVCPLCKKS 46 (233)
T ss_pred EeccccccCC--CCceeeeechhhhhhhhcccCC----------ccccccccce
Confidence 6777765322 3444555899999999975221 1289999873
No 173
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=55.87 E-value=6.6 Score=27.05 Aligned_cols=23 Identities=30% Similarity=0.894 Sum_probs=14.2
Q ss_pred cccccCccccCccccccccccCcee
Q 008295 430 KCTACGTDFSAFVRKHHCRNCGDIF 454 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~Vf 454 (571)
.|..|++.-.... .-|.+||..|
T Consensus 2 ~CP~C~~~V~~~~--~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESA--KFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhc--CcCCCCCCCC
Confidence 5777776554443 3477777765
No 174
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=55.80 E-value=6.7 Score=30.93 Aligned_cols=23 Identities=30% Similarity=0.710 Sum_probs=17.9
Q ss_pred CccccccCccccCccccccccccCc
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGD 452 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~ 452 (571)
...|+.|... +-.|-.+||+||.
T Consensus 14 k~ICrkC~AR--np~~A~~CRKCg~ 36 (48)
T PRK04136 14 KKICMRCNAR--NPWRATKCRKCGY 36 (48)
T ss_pred ccchhcccCC--CCccccccccCCC
Confidence 4689999875 3456889999986
No 175
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=54.96 E-value=1.4 Score=49.97 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=46.0
Q ss_pred cCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCC-cccCCCCCceeeeec
Q 008295 271 KVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGI-RMLDPNTSRTLRIYP 325 (571)
Q Consensus 271 ~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~-~~lD~~gnn~LhiAp 325 (571)
++|-+.-+++....+-||.|+..|+-+||..|+.+|-..+ +|.|..|.|+||-|.
T Consensus 887 ~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa 942 (1004)
T KOG0782|consen 887 LNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAA 942 (1004)
T ss_pred hcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHH
Confidence 5666666788888899999999999999999999994433 588999999999763
No 176
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.92 E-value=5.2 Score=44.03 Aligned_cols=41 Identities=27% Similarity=0.750 Sum_probs=33.2
Q ss_pred CCCccCcCCccccccCccccCccc--cccccccCceeccCCCCC
Q 008295 420 DHWVPDEAVSKCTACGTDFSAFVR--KHHCRNCGDIFCDKCTHG 461 (571)
Q Consensus 420 ~~WvpD~~~~~C~~C~~~Fsl~~R--KHHCR~CG~VfC~~CS~~ 461 (571)
.-|+..+ .+.|..|........+ |+||-.||..||..|...
T Consensus 361 ekwl~~N-~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~ 403 (445)
T KOG1814|consen 361 EKWLESN-SKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAEL 403 (445)
T ss_pred HHHHHhc-CCCCCcccceeecCCCccceeeccccccceeehhhh
Confidence 3687654 7899999987766553 899999999999999863
No 177
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=54.33 E-value=6.7 Score=36.90 Aligned_cols=26 Identities=31% Similarity=0.703 Sum_probs=20.1
Q ss_pred CCccccccCccccCccccccccccCcee
Q 008295 427 AVSKCTACGTDFSAFVRKHHCRNCGDIF 454 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~Vf 454 (571)
....|..|+.. .-.|-|||+.||+.+
T Consensus 47 ~~~~C~~C~~~--kp~Rs~HC~~C~~CV 72 (174)
T PF01529_consen 47 ELKYCSTCKII--KPPRSHHCRVCNRCV 72 (174)
T ss_pred CCEECcccCCc--CCCcceecccccccc
Confidence 36789888753 567899999998764
No 178
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.99 E-value=1.1e+02 Score=36.80 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=15.8
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008295 12 QYPNPNPNPAVDLQPRSYASAPPFSTS 38 (571)
Q Consensus 12 ~~~~p~p~p~~~~~~~~~~s~pp~~~~ 38 (571)
|++.+- +++..++..+.|+.+++.+.
T Consensus 10 q~~~~~-~~~~~~~~~~p~~~~~~~g~ 35 (887)
T KOG1985|consen 10 QNPPPQ-TGPVQPALFPPASLTPQNGM 35 (887)
T ss_pred cCCCCC-CCCcCcccCCCccCCccCCC
Confidence 555554 55656666666777766664
No 179
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=53.47 E-value=6.6 Score=41.90 Aligned_cols=49 Identities=22% Similarity=0.584 Sum_probs=36.3
Q ss_pred CCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHHhh
Q 008295 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRL 488 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~r~ 488 (571)
.+..|..|....-+.-|..-| -.|||-+|... +..++|-.|-+.+.+..
T Consensus 89 ~VHfCd~Cd~PI~IYGRmIPC---kHvFCl~CAr~----------~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 89 RVHFCDRCDFPIAIYGRMIPC---KHVFCLECARS----------DSDKICPLCDDRVQRIE 137 (389)
T ss_pred ceEeecccCCcceeeeccccc---chhhhhhhhhc----------CccccCcCcccHHHHHH
Confidence 378999999988888888765 46899999642 23578888877665443
No 180
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=52.60 E-value=2.5 Score=42.77 Aligned_cols=55 Identities=25% Similarity=0.594 Sum_probs=36.2
Q ss_pred CccccccCccccCc------------cccccccccCceeccCCCCCc--EeccC-------CCCCCceeeccccHH
Q 008295 428 VSKCTACGTDFSAF------------VRKHHCRNCGDIFCDKCTHGR--IALTA-------DANAQPVRVCDRCMA 482 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~------------~RKHHCR~CG~VfC~~CS~~~--i~Lp~-------~~~~~pvRVC~~Cy~ 482 (571)
...|..|++.|+-+ .|-..|..|++.|-..|+-.. .++-. .+....+-||++|--
T Consensus 145 r~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~ 220 (267)
T KOG3576|consen 145 RHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGY 220 (267)
T ss_pred HHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCC
Confidence 56899999999742 244579999999999998421 11110 112245689999953
No 181
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=52.26 E-value=11 Score=29.51 Aligned_cols=32 Identities=25% Similarity=0.671 Sum_probs=23.1
Q ss_pred cccc--ccCccccC----ccccccccccCceeccCCCC
Q 008295 429 SKCT--ACGTDFSA----FVRKHHCRNCGDIFCDKCTH 460 (571)
Q Consensus 429 ~~C~--~C~~~Fsl----~~RKHHCR~CG~VfC~~CS~ 460 (571)
.-|. .|+..+.. ...+..|..||..||..|..
T Consensus 19 ~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~ 56 (64)
T smart00647 19 KWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKV 56 (64)
T ss_pred cCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCC
Confidence 3455 66544333 46688999999999999964
No 182
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=52.01 E-value=8.3 Score=29.36 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=19.0
Q ss_pred ccccccCccccCccc--cccccccCcee
Q 008295 429 SKCTACGTDFSAFVR--KHHCRNCGDIF 454 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~R--KHHCR~CG~Vf 454 (571)
-.|..|+..|.+..+ ..+|..||.-+
T Consensus 4 y~C~~CG~~~~~~~~~~~~~Cp~CG~~~ 31 (46)
T PRK00398 4 YKCARCGREVELDEYGTGVRCPYCGYRI 31 (46)
T ss_pred EECCCCCCEEEECCCCCceECCCCCCeE
Confidence 368999998876544 58888888643
No 183
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=51.72 E-value=9.6 Score=31.01 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=21.7
Q ss_pred CccccccCccccC--ccccccccccCcee
Q 008295 428 VSKCTACGTDFSA--FVRKHHCRNCGDIF 454 (571)
Q Consensus 428 ~~~C~~C~~~Fsl--~~RKHHCR~CG~Vf 454 (571)
...|..|+..-.. ..|.++|..||..+
T Consensus 28 Sq~C~~CG~~~~~~~~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRRSGRVFTCPNCGFEM 56 (69)
T ss_pred ccCccCcccccccccccceEEcCCCCCEE
Confidence 5689999865554 78899999999874
No 184
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=50.94 E-value=8.9 Score=27.79 Aligned_cols=25 Identities=32% Similarity=0.901 Sum_probs=15.2
Q ss_pred cccccCccccCcc-------ccccccccCcee
Q 008295 430 KCTACGTDFSAFV-------RKHHCRNCGDIF 454 (571)
Q Consensus 430 ~C~~C~~~Fsl~~-------RKHHCR~CG~Vf 454 (571)
.|..|++.|.+-. ++..|-+||..|
T Consensus 4 ~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~ 35 (38)
T TIGR02098 4 QCPNCKTSFRVVDSQLGANGGKVRCGKCGHVW 35 (38)
T ss_pred ECCCCCCEEEeCHHHcCCCCCEEECCCCCCEE
Confidence 5888888776542 234566666554
No 185
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=50.58 E-value=8.4 Score=44.96 Aligned_cols=31 Identities=29% Similarity=0.810 Sum_probs=24.9
Q ss_pred CCccccccCccccCccccccccccCce------eccCCCCC
Q 008295 427 AVSKCTACGTDFSAFVRKHHCRNCGDI------FCDKCTHG 461 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~V------fC~~CS~~ 461 (571)
..+.|..|+.++.. ..|..||.. ||..|-..
T Consensus 14 ~akFC~~CG~~l~~----~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 14 NNRFCQKCGTSLTH----KPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CCccccccCCCCCC----CcCCCCCCCCCcccccccccCCc
Confidence 36789999998853 369999988 99999764
No 186
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=50.22 E-value=9.8 Score=39.52 Aligned_cols=35 Identities=23% Similarity=0.627 Sum_probs=27.4
Q ss_pred CccCcCCccccccCccccCc-------cccccccccCceecc
Q 008295 422 WVPDEAVSKCTACGTDFSAF-------VRKHHCRNCGDIFCD 456 (571)
Q Consensus 422 WvpD~~~~~C~~C~~~Fsl~-------~RKHHCR~CG~VfC~ 456 (571)
|-..++++.|..|+++|.-+ ....||.+||+.|=+
T Consensus 126 vp~rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~G 167 (278)
T PF15135_consen 126 VPQRKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFRG 167 (278)
T ss_pred cCcccccccccccccccCCCccccccceeeeecccccccchh
Confidence 34556799999999998753 347899999999844
No 187
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=49.85 E-value=5 Score=47.57 Aligned_cols=31 Identities=16% Similarity=0.060 Sum_probs=27.5
Q ss_pred ccccceEEEEeccCCchHHHHHHHcCCCCCcc
Q 008295 281 GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRM 312 (571)
Q Consensus 281 ~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~ 312 (571)
....|||.|||+.++.+|+.+|++.|++ +-.
T Consensus 129 t~ditPliLAAh~NnyEil~~Ll~kg~~-i~~ 159 (822)
T KOG3609|consen 129 TPDITPLMLAAHLNNFEILQCLLTRGHC-IPI 159 (822)
T ss_pred CCCccHHHHHHHhcchHHHHHHHHcCCC-CCC
Confidence 3568999999999999999999999999 533
No 188
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=49.52 E-value=8.2 Score=36.59 Aligned_cols=26 Identities=31% Similarity=0.806 Sum_probs=18.3
Q ss_pred ccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHH
Q 008295 445 HHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVT 485 (571)
Q Consensus 445 HHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~ 485 (571)
.+|+.||++|=. .-..+|..|++...
T Consensus 4 ~nC~~CgklF~~---------------~~~~iCp~C~~~~e 29 (137)
T TIGR03826 4 ANCPKCGRLFVK---------------TGRDVCPSCYEEEE 29 (137)
T ss_pred ccccccchhhhh---------------cCCccCHHHhHHHH
Confidence 589999999811 12258999998643
No 189
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=49.42 E-value=11 Score=29.70 Aligned_cols=27 Identities=30% Similarity=0.800 Sum_probs=19.1
Q ss_pred CccccccCccc-cCccccccccccCcee
Q 008295 428 VSKCTACGTDF-SAFVRKHHCRNCGDIF 454 (571)
Q Consensus 428 ~~~C~~C~~~F-sl~~RKHHCR~CG~Vf 454 (571)
...|..|+..| ..-..+.+|..||..+
T Consensus 20 ~~fCP~Cg~~~m~~~~~r~~C~~Cgyt~ 47 (50)
T PRK00432 20 NKFCPRCGSGFMAEHLDRWHCGKCGYTE 47 (50)
T ss_pred cCcCcCCCcchheccCCcEECCCcCCEE
Confidence 45899998743 2334588899998765
No 190
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=48.90 E-value=9.9 Score=39.57 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=23.9
Q ss_pred CCCccCcC--CccccccCccccCccccccccccCceec
Q 008295 420 DHWVPDEA--VSKCTACGTDFSAFVRKHHCRNCGDIFC 455 (571)
Q Consensus 420 ~~WvpD~~--~~~C~~C~~~Fsl~~RKHHCR~CG~VfC 455 (571)
..|+...+ .+.|..|+.. .-.|-|||+.|++-+-
T Consensus 103 ~~~~~~~~~~~~~C~~C~~~--rPpRs~HCsvC~~CV~ 138 (299)
T KOG1311|consen 103 NVDVNGIQVEWKYCDTCQLY--RPPRSSHCSVCNNCVL 138 (299)
T ss_pred CcccCCcccceEEcCcCccc--CCCCcccchhhccccc
Confidence 44544333 5789999864 5678999999987543
No 191
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.65 E-value=6.1 Score=41.69 Aligned_cols=31 Identities=29% Similarity=0.623 Sum_probs=23.0
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCc
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~ 462 (571)
.-.|..|-. .++.--|--||+|||+.|...+
T Consensus 239 ~~kC~LCLe----~~~~pSaTpCGHiFCWsCI~~w 269 (293)
T KOG0317|consen 239 TRKCSLCLE----NRSNPSATPCGHIFCWSCILEW 269 (293)
T ss_pred CCceEEEec----CCCCCCcCcCcchHHHHHHHHH
Confidence 468888844 2234568999999999997654
No 192
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=46.64 E-value=6.8 Score=42.50 Aligned_cols=33 Identities=30% Similarity=0.759 Sum_probs=22.6
Q ss_pred CCCCccCcC-----CccccccCccccCccccccccccCce
Q 008295 419 KDHWVPDEA-----VSKCTACGTDFSAFVRKHHCRNCGDI 453 (571)
Q Consensus 419 ~~~WvpD~~-----~~~C~~C~~~Fsl~~RKHHCR~CG~V 453 (571)
-..|.|... ...|..|+. =.--|-||||+|.+.
T Consensus 77 p~~wkPe~~~D~~~lqfCk~Cqg--YKapRSHHCrkCnrC 114 (414)
T KOG1314|consen 77 PLGWKPENPKDEMFLQFCKKCQG--YKAPRSHHCRKCNRC 114 (414)
T ss_pred CCCCCCCCChhHHHHHHHhhccC--cCCCccccchHHHHH
Confidence 356887433 346888874 135689999999774
No 193
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=46.41 E-value=4.4 Score=40.51 Aligned_cols=55 Identities=20% Similarity=0.440 Sum_probs=34.5
Q ss_pred CCccccccCccccCccccccccccCceeccCCCCCcEeccC--------CCCCCceeeccccHHHHH
Q 008295 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTA--------DANAQPVRVCDRCMAEVT 485 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~--------~~~~~pvRVC~~Cy~~l~ 485 (571)
+...|.+|...|..- .--.||++||..|......... ....+....|-.|...+.
T Consensus 17 ~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 17 GDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 346899998876432 2357999999999875422110 001223468999988654
No 194
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=46.18 E-value=6.7 Score=42.28 Aligned_cols=30 Identities=30% Similarity=0.795 Sum_probs=26.2
Q ss_pred ccCccccCccccccccccCceeccCCCCCcE
Q 008295 433 ACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (571)
Q Consensus 433 ~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i 463 (571)
.|+ .|..+.--..||.|-++-|++|..+.+
T Consensus 14 ~cg-~~~pl~~L~FCRyC~klrc~~Cv~hEv 43 (449)
T KOG3896|consen 14 TCG-KFRPLPDLVFCRYCFKLRCDDCVLHEV 43 (449)
T ss_pred ecc-ccccccceeeeeccccccccccccccc
Confidence 566 788888899999999999999998765
No 195
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.57 E-value=40 Score=36.57 Aligned_cols=13 Identities=46% Similarity=0.874 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCCC
Q 008295 49 PQNYPPYPQNSDP 61 (571)
Q Consensus 49 ~~~~~p~~~~~~~ 61 (571)
++.++|||++...
T Consensus 147 ~~~p~p~p~~~~~ 159 (365)
T KOG2391|consen 147 PSPPPPYPQTEYN 159 (365)
T ss_pred CCCCCCCCcccCC
Confidence 5556666665444
No 196
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=44.31 E-value=14 Score=32.58 Aligned_cols=25 Identities=36% Similarity=0.871 Sum_probs=16.5
Q ss_pred CccccccCccccC---------ccccccccccCc
Q 008295 428 VSKCTACGTDFSA---------FVRKHHCRNCGD 452 (571)
Q Consensus 428 ~~~C~~C~~~Fsl---------~~RKHHCR~CG~ 452 (571)
.+.|..|+++... +.-|.+||.|++
T Consensus 33 rS~C~~C~~~L~~~~lIPi~S~l~lrGrCr~C~~ 66 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLIPILSYLLLRGRCRYCGA 66 (92)
T ss_pred CCcCcCCCCcCcccccchHHHHHHhCCCCcccCC
Confidence 4578888776543 334777777765
No 197
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=44.07 E-value=8.3 Score=29.45 Aligned_cols=30 Identities=30% Similarity=0.785 Sum_probs=14.6
Q ss_pred ccccCccccCccccccccccCceeccCCCCC
Q 008295 431 CTACGTDFSAFVRKHHCRNCGDIFCDKCTHG 461 (571)
Q Consensus 431 C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~ 461 (571)
|.+|.. |+.....--=-.||.+||.+|...
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~ 30 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQK 30 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHH
Confidence 667777 755433333345999999998754
No 198
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.95 E-value=8.6 Score=30.49 Aligned_cols=17 Identities=35% Similarity=0.653 Sum_probs=12.8
Q ss_pred CCCCCccccCCCCCccc
Q 008295 551 SSGSETIECGVCQHPFL 567 (571)
Q Consensus 551 ~~D~ev~~C~iCqq~F~ 567 (571)
+.+--...|++||++|+
T Consensus 7 Ka~lp~KICpvCqRPFs 23 (54)
T COG4338 7 KATLPDKICPVCQRPFS 23 (54)
T ss_pred ccccchhhhhhhcCchH
Confidence 34444568999999995
No 199
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=43.11 E-value=8.8 Score=27.92 Aligned_cols=29 Identities=24% Similarity=0.689 Sum_probs=19.6
Q ss_pred ccccCccccCccccccccccCceeccCCCCCc
Q 008295 431 CTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (571)
Q Consensus 431 C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~ 462 (571)
|.+|...+ ......-.||++||..|....
T Consensus 1 C~iC~~~~---~~~~~~~~CGH~fC~~C~~~~ 29 (39)
T PF13923_consen 1 CPICLDEL---RDPVVVTPCGHSFCKECIEKY 29 (39)
T ss_dssp ETTTTSB----SSEEEECTTSEEEEHHHHHHH
T ss_pred CCCCCCcc---cCcCEECCCCCchhHHHHHHH
Confidence 55665533 334567899999999997643
No 200
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=41.70 E-value=16 Score=26.37 Aligned_cols=23 Identities=26% Similarity=0.742 Sum_probs=15.2
Q ss_pred cccccCccccCcc-ccccccccCc
Q 008295 430 KCTACGTDFSAFV-RKHHCRNCGD 452 (571)
Q Consensus 430 ~C~~C~~~Fsl~~-RKHHCR~CG~ 452 (571)
.|..|+..|.+-. -...|+.||.
T Consensus 2 ~C~~Cg~~~~~~~~~~irC~~CG~ 25 (32)
T PF03604_consen 2 ICGECGAEVELKPGDPIRCPECGH 25 (32)
T ss_dssp BESSSSSSE-BSTSSTSSBSSSS-
T ss_pred CCCcCCCeeEcCCCCcEECCcCCC
Confidence 4888988888543 3567888875
No 201
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=40.69 E-value=8.9 Score=27.09 Aligned_cols=30 Identities=27% Similarity=0.738 Sum_probs=21.0
Q ss_pred cccccCccccCccccccccccCceeccCCCCCc
Q 008295 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~ 462 (571)
.|.+|...| .....-..||..||..|....
T Consensus 1 ~C~iC~~~~---~~~~~~~~C~H~~c~~C~~~~ 30 (45)
T cd00162 1 ECPICLEEF---REPVVLLPCGHVFCRSCIDKW 30 (45)
T ss_pred CCCcCchhh---hCceEecCCCChhcHHHHHHH
Confidence 377887776 333445569999999997644
No 202
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=40.43 E-value=14 Score=24.96 Aligned_cols=14 Identities=29% Similarity=0.728 Sum_probs=11.5
Q ss_pred CccccCCCCCcccc
Q 008295 555 ETIECGVCQHPFLV 568 (571)
Q Consensus 555 ev~~C~iCqq~F~~ 568 (571)
+.+.|++|++.|..
T Consensus 1 ~l~~C~~CgR~F~~ 14 (25)
T PF13913_consen 1 ELVPCPICGRKFNP 14 (25)
T ss_pred CCCcCCCCCCEECH
Confidence 35689999999964
No 203
>PF09947 DUF2180: Uncharacterized protein conserved in archaea (DUF2180); InterPro: IPR017211 This group represents a predicted zinc finger protein, AF1427 type.
Probab=40.18 E-value=14 Score=31.29 Aligned_cols=54 Identities=20% Similarity=0.436 Sum_probs=32.2
Q ss_pred cccccCccccCccccccccccCceeccCCCCCcEeccCC-----------CCCCceeeccccHHHH
Q 008295 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTAD-----------ANAQPVRVCDRCMAEV 484 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~-----------~~~~pvRVC~~Cy~~l 484 (571)
.|..|...=.-..----|..||+.+|.+|+... .++.. ....+--+|..|++.+
T Consensus 2 kCY~Ca~~gkdt~AVavCivCG~GlC~~H~~~e-~~~~~~g~yp~~~~~~~~~l~RilC~~C~~a~ 66 (68)
T PF09947_consen 2 KCYDCAEEGKDTDAVAVCIVCGAGLCMDHSKRE-EIPVWEGGYPFPSKKLKKPLPRILCPECHAAL 66 (68)
T ss_pred cchhhhhcCCCccceehHHhcCchhhHHHHhhh-heeeeccCCCCccccccCCCCeeecHHHHHHh
Confidence 466665432233334568999999999998742 22211 1112335899999765
No 204
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=40.12 E-value=17 Score=27.42 Aligned_cols=23 Identities=30% Similarity=0.736 Sum_probs=12.5
Q ss_pred cCccccCccccccccccCceeccCCC
Q 008295 434 CGTDFSAFVRKHHCRNCGDIFCDKCT 459 (571)
Q Consensus 434 C~~~Fsl~~RKHHCR~CG~VfC~~CS 459 (571)
|++.-.+ -..|+.||+.||.++-
T Consensus 6 C~~~~~~---~~~C~~C~~~FC~~Hr 28 (43)
T PF01428_consen 6 CKKKDFL---PFKCKHCGKSFCLKHR 28 (43)
T ss_dssp T--BCTS---HEE-TTTS-EE-TTTH
T ss_pred CcCccCC---CeECCCCCcccCcccc
Confidence 6654332 4679999999998764
No 205
>PRK04023 DNA polymerase II large subunit; Validated
Probab=39.85 E-value=20 Score=43.84 Aligned_cols=43 Identities=28% Similarity=0.690 Sum_probs=29.5
Q ss_pred CCccccccCccccCccccccccccCce-----eccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 427 AVSKCTACGTDFSAFVRKHHCRNCGDI-----FCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~V-----fC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
....|..|++.. -...|..||.. ||.+|-.... .-.|..|-.+
T Consensus 625 g~RfCpsCG~~t----~~frCP~CG~~Te~i~fCP~CG~~~~----------~y~CPKCG~E 672 (1121)
T PRK04023 625 GRRKCPSCGKET----FYRRCPFCGTHTEPVYRCPRCGIEVE----------EDECEKCGRE 672 (1121)
T ss_pred cCccCCCCCCcC----CcccCCCCCCCCCcceeCccccCcCC----------CCcCCCCCCC
Confidence 357999999874 23689999964 9999943211 1348888653
No 206
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=39.80 E-value=4e+02 Score=28.41 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=20.7
Q ss_pred CcccCCCCC-ccccCCCCCC---CCCCCCCCccccCCCCC
Q 008295 164 SVKFDSGGG-YFDDKYGGYN---GSRSNLGSDLYAKRPES 199 (571)
Q Consensus 164 ~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 199 (571)
..+||+-.| |=+.--.|+. +++-++|+-|-.|..+.
T Consensus 109 ~grvdn~~gGFS~vvP~GW~~Sda~~L~yG~alls~~~~~ 148 (297)
T PF07174_consen 109 PGRVDNAAGGFSYVVPAGWVESDASHLDYGSALLSKQTGE 148 (297)
T ss_pred cccccccccceEEeccCCccccccceeecceeeeccCCCC
Confidence 567776555 4333445554 45556777777766543
No 207
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=39.77 E-value=25 Score=37.54 Aligned_cols=57 Identities=25% Similarity=0.623 Sum_probs=35.2
Q ss_pred CccccccCccc--c--------CccccccccccC------ceeccCCCCCcEeccC---CC--CCCcee--eccccHHHH
Q 008295 428 VSKCTACGTDF--S--------AFVRKHHCRNCG------DIFCDKCTHGRIALTA---DA--NAQPVR--VCDRCMAEV 484 (571)
Q Consensus 428 ~~~C~~C~~~F--s--------l~~RKHHCR~CG------~VfC~~CS~~~i~Lp~---~~--~~~pvR--VC~~Cy~~l 484 (571)
...|..|+..= + --.|..||-.|+ ++-|..|-+.+ .|.. .. ....+| +|+.|..=+
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~-~l~y~~~e~~~~~~~~r~e~C~~C~~Yl 262 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEESK-HLAYLSLEHDAEKAVLKAETCDSCQGYL 262 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCCC-ceeeEeecCCCCCcceEEeeccccccch
Confidence 45899998642 2 124788999998 56788887643 2221 11 122344 999998644
Q ss_pred H
Q 008295 485 T 485 (571)
Q Consensus 485 ~ 485 (571)
.
T Consensus 263 K 263 (305)
T TIGR01562 263 K 263 (305)
T ss_pred h
Confidence 3
No 208
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=39.77 E-value=17 Score=27.27 Aligned_cols=25 Identities=32% Similarity=0.740 Sum_probs=13.8
Q ss_pred cccccCccc---cCccccccccccCcee
Q 008295 430 KCTACGTDF---SAFVRKHHCRNCGDIF 454 (571)
Q Consensus 430 ~C~~C~~~F---sl~~RKHHCR~CG~Vf 454 (571)
.|..|+.+. ...+...-|..||.|+
T Consensus 2 ~Cp~Cg~~~~~~D~~~g~~vC~~CG~Vl 29 (43)
T PF08271_consen 2 KCPNCGSKEIVFDPERGELVCPNCGLVL 29 (43)
T ss_dssp SBTTTSSSEEEEETTTTEEEETTT-BBE
T ss_pred CCcCCcCCceEEcCCCCeEECCCCCCEe
Confidence 588887654 2233445566666554
No 209
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=39.71 E-value=23 Score=24.73 Aligned_cols=28 Identities=25% Similarity=0.666 Sum_probs=23.1
Q ss_pred cccccCccccCccccccccccCceeccCC
Q 008295 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~VfC~~C 458 (571)
.|..|+++.+-+. ..+|..|+..+..+|
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCcc
Confidence 5889998888777 899999998777666
No 210
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=39.34 E-value=12 Score=28.88 Aligned_cols=14 Identities=43% Similarity=1.120 Sum_probs=9.7
Q ss_pred cccccCccccCccc
Q 008295 430 KCTACGTDFSAFVR 443 (571)
Q Consensus 430 ~C~~C~~~Fsl~~R 443 (571)
.|..|+..|..+.+
T Consensus 7 ~C~~Cg~~fe~~~~ 20 (52)
T TIGR02605 7 RCTACGHRFEVLQK 20 (52)
T ss_pred EeCCCCCEeEEEEe
Confidence 57777877776643
No 211
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=39.06 E-value=15 Score=42.45 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=47.0
Q ss_pred cCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCC
Q 008295 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNT 317 (571)
Q Consensus 258 ~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~g 317 (571)
...+....|-.|++.|++.+++|..|.|+||++...|...+...++..-.+ +.+.-..+
T Consensus 404 ~~~~~ss~v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~~~-~~~~~~~~ 462 (605)
T KOG3836|consen 404 ALNNSSSLVFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCKVA-ISLKSVNG 462 (605)
T ss_pred hhcCCccceeeeecccCccchhcccccccccccCCCCCHHHhhhhhhhhhh-hhcccccc
Confidence 334556678889999999999999999999999999999988877776666 43444444
No 212
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=38.22 E-value=2.2e+02 Score=31.94 Aligned_cols=8 Identities=38% Similarity=0.816 Sum_probs=4.7
Q ss_pred hhHhhhcc
Q 008295 263 SKIVRAVP 270 (571)
Q Consensus 263 ~~iVr~Ll 270 (571)
.+|+|+|.
T Consensus 428 aElT~~VP 435 (487)
T KOG4672|consen 428 AELTRLVP 435 (487)
T ss_pred hHHHhhcc
Confidence 56666654
No 213
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=38.16 E-value=15 Score=43.87 Aligned_cols=43 Identities=26% Similarity=0.523 Sum_probs=31.5
Q ss_pred CCCCccCcC--CccccccCccccCccccccccccCceeccCCCCCcE
Q 008295 419 KDHWVPDEA--VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (571)
Q Consensus 419 ~~~WvpD~~--~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i 463 (571)
+.-|..... ...|..|.+ ++|+-.--|+.||..||-.|...+-
T Consensus 218 ~~a~k~a~~g~~~mC~~C~~--tlfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 218 KVAWKRAVKGIREMCDRCET--TLFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred ccchhhcccCcchhhhhhcc--cccceeEEccccCCeeeecchhhcc
Confidence 345655433 578999987 4454456799999999999998764
No 214
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=37.90 E-value=15 Score=39.18 Aligned_cols=27 Identities=37% Similarity=0.703 Sum_probs=19.2
Q ss_pred cCcCCccccccCccccCccccccccccCc
Q 008295 424 PDEAVSKCTACGTDFSAFVRKHHCRNCGD 452 (571)
Q Consensus 424 pD~~~~~C~~C~~~Fsl~~RKHHCR~CG~ 452 (571)
.+.....|..|+. -.-.|-||||-|++
T Consensus 105 ~~g~~R~C~kC~~--iKPdRaHHCsvC~r 131 (307)
T KOG1315|consen 105 SDGAVRYCDKCKC--IKPDRAHHCSVCNR 131 (307)
T ss_pred CCCCceeeccccc--ccCCccccchhhhh
Confidence 4555778888875 24578899998854
No 215
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=37.13 E-value=21 Score=26.24 Aligned_cols=10 Identities=40% Similarity=0.989 Sum_probs=3.9
Q ss_pred CceeeccccH
Q 008295 472 QPVRVCDRCM 481 (571)
Q Consensus 472 ~pvRVC~~Cy 481 (571)
-..+||+.|.
T Consensus 22 F~~~VCD~CR 31 (34)
T PF01286_consen 22 FDLPVCDKCR 31 (34)
T ss_dssp TS-S--TTT-
T ss_pred CCcccccccc
Confidence 3467777775
No 216
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=37.09 E-value=21 Score=36.30 Aligned_cols=24 Identities=29% Similarity=0.728 Sum_probs=19.0
Q ss_pred CccccccCccccCccccccccccCcee
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIF 454 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~Vf 454 (571)
...|..|+. +..|.+.|..||..+
T Consensus 309 S~~C~~cg~---~~~r~~~C~~cg~~~ 332 (364)
T COG0675 309 SKTCPCCGH---LSGRLFKCPRCGFVH 332 (364)
T ss_pred cccccccCC---ccceeEECCCCCCee
Confidence 578999999 456778888888765
No 217
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.92 E-value=10 Score=39.56 Aligned_cols=45 Identities=27% Similarity=0.617 Sum_probs=29.3
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
-+|..|-..- -.--|+.||+|||..|....+ -.+..-.|-.|...
T Consensus 216 ~kC~lC~e~~----~~ps~t~CgHlFC~~Cl~~~~------t~~k~~~CplCRak 260 (271)
T COG5574 216 YKCFLCLEEP----EVPSCTPCGHLFCLSCLLISW------TKKKYEFCPLCRAK 260 (271)
T ss_pred cceeeeeccc----CCcccccccchhhHHHHHHHH------HhhccccCchhhhh
Confidence 4788886532 245689999999999975421 12334457777653
No 218
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=36.70 E-value=17 Score=33.23 Aligned_cols=25 Identities=20% Similarity=0.592 Sum_probs=19.2
Q ss_pred CccccccCccccCccccccccccCc
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGD 452 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~ 452 (571)
.-.|..|+..|....+...|-.||.
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs 94 (115)
T TIGR00100 70 ECECEDCSEEVSPEIDLYRCPKCHG 94 (115)
T ss_pred EEEcccCCCEEecCCcCccCcCCcC
Confidence 4689999999988766566777764
No 219
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=36.38 E-value=16 Score=28.94 Aligned_cols=24 Identities=33% Similarity=0.803 Sum_probs=17.2
Q ss_pred ccccccCccccCc--cccccccccCc
Q 008295 429 SKCTACGTDFSAF--VRKHHCRNCGD 452 (571)
Q Consensus 429 ~~C~~C~~~Fsl~--~RKHHCR~CG~ 452 (571)
=.|..|++.|.++ .+-.-|..||.
T Consensus 7 Y~C~~Cg~~~~~~~~~~~irCp~Cg~ 32 (49)
T COG1996 7 YKCARCGREVELDQETRGIRCPYCGS 32 (49)
T ss_pred EEhhhcCCeeehhhccCceeCCCCCc
Confidence 3699999999754 45566777664
No 220
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=36.03 E-value=30 Score=38.95 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=13.6
Q ss_pred CCCCCCCceEEeeCCccccccC
Q 008295 205 YDDGYGDGVYAYEGGKLEPYGA 226 (571)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~ 226 (571)
-.||+=+|.-||+-...+=++.
T Consensus 119 ~~dg~~~GlIAY~~~~~~~Wnv 140 (465)
T PF01690_consen 119 PNDGKWDGLIAYDNSSSDGWNV 140 (465)
T ss_pred CCCCceeeeEEecCcccccccc
Confidence 4467777777777665454443
No 221
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=35.87 E-value=20 Score=27.59 Aligned_cols=23 Identities=30% Similarity=0.713 Sum_probs=15.7
Q ss_pred cccccCccccCc-cccccccccCc
Q 008295 430 KCTACGTDFSAF-VRKHHCRNCGD 452 (571)
Q Consensus 430 ~C~~C~~~Fsl~-~RKHHCR~CG~ 452 (571)
.|..|+..|.+. .....|+.||.
T Consensus 4 ~C~~Cg~~~~~~~~~~irC~~CG~ 27 (44)
T smart00659 4 ICGECGRENEIKSKDVVRCRECGY 27 (44)
T ss_pred ECCCCCCEeecCCCCceECCCCCc
Confidence 588999988876 33455666654
No 222
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=35.52 E-value=38 Score=39.21 Aligned_cols=59 Identities=22% Similarity=0.443 Sum_probs=42.6
Q ss_pred ccccccCcccc--CccccccccccCceeccCCCCCcEec-cC----CCCCCceeeccccHHHHHHh
Q 008295 429 SKCTACGTDFS--AFVRKHHCRNCGDIFCDKCTHGRIAL-TA----DANAQPVRVCDRCMAEVTQR 487 (571)
Q Consensus 429 ~~C~~C~~~Fs--l~~RKHHCR~CG~VfC~~CS~~~i~L-p~----~~~~~pvRVC~~Cy~~l~~r 487 (571)
-.|..|++.+. ++.|---|+-+|+-||+.|-.+.+.+ ++ ...-.+..||+.=+..|...
T Consensus 341 ~~CAgC~~~i~~~~~~~~R~C~y~G~y~C~~Ch~~~~svIPARVl~~WDf~~y~Vs~~a~~~L~~i 406 (580)
T KOG1829|consen 341 FRCAGCGHTIGPDLEQRPRLCRYLGKYFCDCCHQNDKSVIPARVLHNWDFTKYPVSNFAKQFLDEI 406 (580)
T ss_pred ceecccCCCcccccccchhHhhhhhhhhCchhcccCcccccccceecccCcccccchhHHHHHHHH
Confidence 47999999998 45677889999999999998876544 43 22335667887666655433
No 223
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.51 E-value=2.5e+02 Score=30.00 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008295 23 DLQPRSYASAPPFSTSYSPSDYSGGYPQNYP 53 (571)
Q Consensus 23 ~~~~~~~~s~pp~~~~~~~~~~~~~~~~~~~ 53 (571)
|..++.++|++--.+.-+|.+ +.|+++|.
T Consensus 169 di~~~~~~s~d~~P~~tGp~~--~syp~Py~ 197 (338)
T KOG0917|consen 169 DIEENEDASADSLPTQTGPTQ--PSYPSPYD 197 (338)
T ss_pred ccCccccccCCCCCCCCCCCC--CCCCCCCC
Confidence 677888998887666666665 33444443
No 224
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=35.44 E-value=63 Score=42.09 Aligned_cols=13 Identities=15% Similarity=0.215 Sum_probs=7.7
Q ss_pred CCCccccccccCC
Q 008295 232 KSSNSTLFDDYGR 244 (571)
Q Consensus 232 ~~~~~a~~~~~~~ 244 (571)
-++|.-+|=.||+
T Consensus 1805 grl~~GVmaGYgn 1817 (2039)
T PRK15319 1805 QSVTVGVMASYIN 1817 (2039)
T ss_pred CcEEEEEEEEecc
Confidence 3466666666655
No 225
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=35.09 E-value=18 Score=38.47 Aligned_cols=24 Identities=29% Similarity=0.674 Sum_probs=17.7
Q ss_pred CccccccCccccCccccccccccCce
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDI 453 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~V 453 (571)
...|..|+. -.--|-|||+.|++.
T Consensus 109 ~~~C~~C~~--~KP~RS~HC~~Cn~C 132 (309)
T COG5273 109 ENFCSTCNI--YKPPRSHHCSICNRC 132 (309)
T ss_pred ceecccccc--ccCCCCccchhhcch
Confidence 567888865 245788999988875
No 226
>PRK11595 DNA utilization protein GntX; Provisional
Probab=34.61 E-value=11 Score=37.84 Aligned_cols=31 Identities=26% Similarity=0.778 Sum_probs=24.3
Q ss_pred ccccccCccccCccccccccccCce------eccCCCCC
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGDI------FCDKCTHG 461 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~V------fC~~CS~~ 461 (571)
..|..|...|.++ .++|..||+. +|..|...
T Consensus 21 ~lC~~C~~~l~~~--~~~C~~Cg~~~~~~~~~C~~C~~~ 57 (227)
T PRK11595 21 GICSVCSRALRTL--KTCCPQCGLPATHPHLPCGRCLQK 57 (227)
T ss_pred cccHHHHhhCCcc--cCcCccCCCcCCCCCCCcHHHHcC
Confidence 4799999888775 5899999974 48888653
No 227
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=33.86 E-value=17 Score=38.15 Aligned_cols=56 Identities=25% Similarity=0.653 Sum_probs=33.1
Q ss_pred CccccccCcccc---Ccc---------ccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHH
Q 008295 428 VSKCTACGTDFS---AFV---------RKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVT 485 (571)
Q Consensus 428 ~~~C~~C~~~Fs---l~~---------RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~ 485 (571)
--+|..|++.|+ ++. +=.-|-+||+-|=++ |+.|+-+-.... ...--|..|.+.+.
T Consensus 187 ~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR-SNLRAHmQTHS~-~K~~qC~~C~KsFs 254 (279)
T KOG2462|consen 187 PCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR-SNLRAHMQTHSD-VKKHQCPRCGKSFA 254 (279)
T ss_pred CcccccccccccchHHhhcccccccCCCCccCCcccchhcch-HHHHHHHHhhcC-CccccCcchhhHHH
Confidence 347889999988 432 234588888888554 233333322222 23466888887654
No 228
>PF04981 NMD3: NMD3 family ; InterPro: IPR007064 The NMD3 protein is involved in nonsense mediated mRNA decay. This N-terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway [].
Probab=33.86 E-value=18 Score=36.65 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=21.8
Q ss_pred eeccCCCCCcEeccCCCCCCceeeccccHHHH
Q 008295 453 IFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (571)
Q Consensus 453 VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l 484 (571)
-+|..|...+..|........+.+|..|-..+
T Consensus 14 ~lC~~C~~~~~~i~ei~~~i~v~~C~~Cg~~~ 45 (236)
T PF04981_consen 14 GLCPDCYLKRFDIIEIPDRIEVTICPKCGRYR 45 (236)
T ss_pred ccChHHhcccCCeeecCCccCceECCCCCCEE
Confidence 48888887776665433334678899887644
No 229
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=33.53 E-value=6.3e+02 Score=30.56 Aligned_cols=26 Identities=38% Similarity=0.664 Sum_probs=17.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008295 106 YQPPQQPPAFYPPFDQHQTGPNYAPP 131 (571)
Q Consensus 106 ~~~~~~~~~~~~p~~~~~~~~~~~~p 131 (571)
+|++-.++.+-+||||+|-.|.-...
T Consensus 609 ~~~~~s~~~~~pp~pq~~~~p~~~gr 634 (756)
T KOG2375|consen 609 PQQPGSPPQFMPPYPQPQFSPSGNGR 634 (756)
T ss_pred ccccccccccCCCCCCcccCCCcCCC
Confidence 34444556788888888877766443
No 230
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.57 E-value=9.1 Score=39.23 Aligned_cols=49 Identities=24% Similarity=0.532 Sum_probs=29.3
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVT 485 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~ 485 (571)
--.|.+|-.. -+---=-.||++||+-|.-++..+. .-..+|-.|...+.
T Consensus 47 ~FdCNICLd~----akdPVvTlCGHLFCWpClyqWl~~~-----~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 47 FFDCNICLDL----AKDPVVTLCGHLFCWPCLYQWLQTR-----PNSKECPVCKAEVS 95 (230)
T ss_pred ceeeeeeccc----cCCCEEeecccceehHHHHHHHhhc-----CCCeeCCccccccc
Confidence 4467777321 1111123899999999986554332 22467788887654
No 231
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=32.44 E-value=33 Score=29.51 Aligned_cols=31 Identities=23% Similarity=0.619 Sum_probs=23.9
Q ss_pred CccccccCccccCccccccccccCceeccCCCC
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTH 460 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~ 460 (571)
...|..|++.|+. ....--.||.+|...|..
T Consensus 78 ~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence 4579999998864 455556889999888864
No 232
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=32.36 E-value=14 Score=33.49 Aligned_cols=26 Identities=27% Similarity=0.747 Sum_probs=18.7
Q ss_pred CccccccCccccCccccccccccCce
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDI 453 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~V 453 (571)
.-.|..|+..|..-.....|..||..
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEFDFSCPRCGSP 95 (113)
T ss_dssp EEEETTTS-EEECHHCCHH-SSSSSS
T ss_pred cEECCCCCCEEecCCCCCCCcCCcCC
Confidence 46899999999987776777777753
No 233
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=31.72 E-value=16 Score=41.31 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=33.0
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccC
Q 008295 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG 294 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g 294 (571)
+|+.|..++|..||..|+|-..+|+.|+||--|++.++
T Consensus 437 aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkd 474 (591)
T KOG2505|consen 437 AAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKD 474 (591)
T ss_pred HHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHH
Confidence 44555699999999999999999999999999998544
No 234
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=31.02 E-value=21 Score=42.55 Aligned_cols=53 Identities=6% Similarity=0.152 Sum_probs=43.0
Q ss_pred CccCCCchhHhhhcccCC----cccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 256 SSVGSGSSKIVRAVPKVD----THQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 256 ~~~~~g~~~iVr~Ll~ag----A~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
.++..|+.-.||..|.-- -.+|+.|-.|+++||||.++-+.+++++|++.+.+
T Consensus 31 ~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~ 87 (822)
T KOG3609|consen 31 LAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE 87 (822)
T ss_pred HHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc
Confidence 355666677777665322 36789999999999999999999999999999888
No 235
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.77 E-value=2.7e+02 Score=29.72 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=5.8
Q ss_pred CCCCCCCCCCCCCC
Q 008295 30 ASAPPFSTSYSPSD 43 (571)
Q Consensus 30 ~s~pp~~~~~~~~~ 43 (571)
++.++....|+|..
T Consensus 187 p~~~syp~Py~p~p 200 (338)
T KOG0917|consen 187 PTQPSYPSPYDPSP 200 (338)
T ss_pred CCCCCCCCCCCCCC
Confidence 33344444444443
No 236
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=30.63 E-value=4e+02 Score=30.08 Aligned_cols=8 Identities=38% Similarity=0.737 Sum_probs=3.8
Q ss_pred CCCCcccc
Q 008295 187 NLGSDLYA 194 (571)
Q Consensus 187 ~~~~~~~~ 194 (571)
-||..||.
T Consensus 508 ~lg~~~~~ 515 (562)
T TIGR01628 508 VLGERLFP 515 (562)
T ss_pred HHHHHhHH
Confidence 34444544
No 237
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=30.41 E-value=18 Score=28.44 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=5.7
Q ss_pred ccCCCCCccc
Q 008295 558 ECGVCQHPFL 567 (571)
Q Consensus 558 ~C~iCqq~F~ 567 (571)
.||+|+++|+
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 8999999996
No 238
>PRK00420 hypothetical protein; Validated
Probab=30.36 E-value=32 Score=31.72 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=15.4
Q ss_pred CccccccCccccC-ccccccccccCce
Q 008295 428 VSKCTACGTDFSA-FVRKHHCRNCGDI 453 (571)
Q Consensus 428 ~~~C~~C~~~Fsl-~~RKHHCR~CG~V 453 (571)
...|..|+..|.- -.++.-|-.||.+
T Consensus 23 ~~~CP~Cg~pLf~lk~g~~~Cp~Cg~~ 49 (112)
T PRK00420 23 SKHCPVCGLPLFELKDGEVVCPVHGKV 49 (112)
T ss_pred cCCCCCCCCcceecCCCceECCCCCCe
Confidence 3589999976653 3444444444443
No 239
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=30.28 E-value=36 Score=25.96 Aligned_cols=10 Identities=40% Similarity=1.006 Sum_probs=5.3
Q ss_pred cccccccCce
Q 008295 444 KHHCRNCGDI 453 (571)
Q Consensus 444 KHHCR~CG~V 453 (571)
+..|+.||.+
T Consensus 20 ~~vC~~Cg~~ 29 (52)
T smart00661 20 RFVCRKCGYE 29 (52)
T ss_pred EEECCcCCCe
Confidence 4455555554
No 240
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=29.97 E-value=34 Score=32.27 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=9.2
Q ss_pred CCccccccCcccc
Q 008295 427 AVSKCTACGTDFS 439 (571)
Q Consensus 427 ~~~~C~~C~~~Fs 439 (571)
.-+.|..|+..+-
T Consensus 90 ~~sRC~~CN~~L~ 102 (147)
T PF01927_consen 90 IFSRCPKCNGPLR 102 (147)
T ss_pred CCCccCCCCcEee
Confidence 3568888887654
No 241
>PF09332 Mcm10: Mcm10 replication factor; InterPro: IPR015411 Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha []. ; PDB: 2KWQ_A.
Probab=29.81 E-value=17 Score=39.34 Aligned_cols=51 Identities=25% Similarity=0.677 Sum_probs=20.1
Q ss_pred CccccccCccccCccccccccccC-----------ceeccCCCCCcEeccCCCCCCceeeccccHHHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCG-----------DIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG-----------~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l 484 (571)
+-.|..|. .+.+...--|+.=+ .+-|..|....+.|. .-|...|..|-..-
T Consensus 252 av~C~~C~--yt~~~~~~~C~~~~H~l~~~~a~KRFFkC~~C~~Rt~sl~----r~P~~~C~~Cg~~~ 313 (344)
T PF09332_consen 252 AVTCKQCK--YTAFKPSDRCKEEGHPLKWHDAVKRFFKCKDCGNRTISLE----RLPKKHCSNCGSSK 313 (344)
T ss_dssp EEEETTT----EESS--HHHHHTT--EEEEEEE-EEEE-T-TS-EEEESS----SS--S--TTT-S--
T ss_pred EEEcCCCC--CcccCcchhHHhcCCceEEeeeeeeeEECCCCCCeeeecc----cCCCCCCCcCCcCc
Confidence 56788885 33333333343222 224666766555552 24778899998643
No 242
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=29.58 E-value=2.2e+02 Score=32.95 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=18.2
Q ss_pred ccccceEEEEecc----CCchHHHHHHHcCCCCCcccCCCC
Q 008295 281 GVQKFRVKLLAES----GGQSTMDVLCQIGLDGIRMLDPNT 317 (571)
Q Consensus 281 ~~~kTpLHlaa~~----g~~~iv~vLlq~Gadg~~~lD~~g 317 (571)
.+|-+|||-++.- -..+.|.+-+++|.. +.|.+.
T Consensus 341 thG~~plH~L~~vL~~ia~~EGv~~A~~lGmm---ft~~n~ 378 (582)
T PF03276_consen 341 THGSYPLHQLADVLRGIANQEGVATAYNLGMM---FTNQNF 378 (582)
T ss_pred hcccchHHHHHHHHHHHhhhhhHHHHHHhhce---eecCCc
Confidence 3677888754332 111335556666665 455554
No 243
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=29.40 E-value=26 Score=32.09 Aligned_cols=25 Identities=20% Similarity=0.531 Sum_probs=17.7
Q ss_pred CccccccCccccCcccc-ccccccCc
Q 008295 428 VSKCTACGTDFSAFVRK-HHCRNCGD 452 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RK-HHCR~CG~ 452 (571)
.-.|..|+..|...... -+|..||.
T Consensus 71 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs 96 (117)
T PRK00564 71 ELECKDCSHVFKPNALDYGVCEKCHS 96 (117)
T ss_pred EEEhhhCCCccccCCccCCcCcCCCC
Confidence 46899999998876443 34777764
No 244
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=29.33 E-value=26 Score=37.60 Aligned_cols=41 Identities=20% Similarity=0.525 Sum_probs=32.3
Q ss_pred CCCccCcCCccccccCccccC----------ccccccccccCceeccCCCC
Q 008295 420 DHWVPDEAVSKCTACGTDFSA----------FVRKHHCRNCGDIFCDKCTH 460 (571)
Q Consensus 420 ~~WvpD~~~~~C~~C~~~Fsl----------~~RKHHCR~CG~VfC~~CS~ 460 (571)
..|-..-....|..|+..|-. ...|..|..|-.-||.+|-.
T Consensus 354 ~p~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdv 404 (421)
T COG5151 354 KPEGTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDV 404 (421)
T ss_pred ccCCCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHH
Confidence 456665567789999997743 46789999999999999953
No 245
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=29.30 E-value=23 Score=25.68 Aligned_cols=13 Identities=31% Similarity=1.009 Sum_probs=8.2
Q ss_pred cccccCccccCcc
Q 008295 430 KCTACGTDFSAFV 442 (571)
Q Consensus 430 ~C~~C~~~Fsl~~ 442 (571)
.|..|+..|.++.
T Consensus 7 ~C~~Cg~~fe~~~ 19 (41)
T smart00834 7 RCEDCGHTFEVLQ 19 (41)
T ss_pred EcCCCCCEEEEEE
Confidence 5667777666543
No 246
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=29.24 E-value=26 Score=36.39 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=41.0
Q ss_pred CCchhHhhhcccCCc-cccc---ccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 260 SGSSKIVRAVPKVDT-HQDV---KSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 260 ~g~~~iVr~Ll~agA-~vn~---kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
+.+.+|++-.|..|- +||. +-+.|-|.|-=|.+.+..+++++||++||-
T Consensus 227 ~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 227 SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred CCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 345889998888885 6774 367899999999999999999999999983
No 247
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=29.20 E-value=31 Score=30.53 Aligned_cols=29 Identities=28% Similarity=0.676 Sum_probs=20.0
Q ss_pred CccccccCccccC---ccccccccccCceeccC
Q 008295 428 VSKCTACGTDFSA---FVRKHHCRNCGDIFCDK 457 (571)
Q Consensus 428 ~~~C~~C~~~Fsl---~~RKHHCR~CG~VfC~~ 457 (571)
...|..|++. .. -...--|++||..|=.-
T Consensus 35 ~~~Cp~C~~~-~VkR~a~GIW~C~kCg~~fAGg 66 (89)
T COG1997 35 KHVCPFCGRT-TVKRIATGIWKCRKCGAKFAGG 66 (89)
T ss_pred CCcCCCCCCc-ceeeeccCeEEcCCCCCeeccc
Confidence 4589999886 21 23356799999988443
No 248
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=29.09 E-value=18 Score=32.66 Aligned_cols=54 Identities=22% Similarity=0.524 Sum_probs=33.5
Q ss_pred CccccccCccccCccccccc------ccc---CceeccCCCCCcEeccC-CCCCCceeeccccHHH
Q 008295 428 VSKCTACGTDFSAFVRKHHC------RNC---GDIFCDKCTHGRIALTA-DANAQPVRVCDRCMAE 483 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHC------R~C---G~VfC~~CS~~~i~Lp~-~~~~~pvRVC~~Cy~~ 483 (571)
...|+.|+++-. ..+..| ..| ...||..|..++.-... +...+..-+|-.|.+.
T Consensus 7 g~~CHqCrqKt~--~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 7 GKTCHQCRQKTL--DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCCchhhcCCCC--CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 568999976432 223344 666 99999999987654321 1122455777777763
No 249
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=27.79 E-value=56 Score=32.62 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=32.2
Q ss_pred cccccCceeccCCCCCc-EeccC----CCCCCceeeccccHHHHHHhh
Q 008295 446 HCRNCGDIFCDKCTHGR-IALTA----DANAQPVRVCDRCMAEVTQRL 488 (571)
Q Consensus 446 HCR~CG~VfC~~CS~~~-i~Lp~----~~~~~pvRVC~~Cy~~l~~r~ 488 (571)
.|.-.|+.||..|-.+. +.||. ..+-++..||+..++.|....
T Consensus 2 ~C~Y~G~yyC~~CH~~~~~vIParil~~WDf~~~pVs~~a~~~L~~~~ 49 (202)
T PF13901_consen 2 FCDYTGKYYCSSCHWNDTSVIPARILHNWDFRPYPVSRFAKQFLDQIW 49 (202)
T ss_pred ccCCCCCcCCCCCCCCCceeccHHHHHhcCCCccHHHHHHHHHHHHhc
Confidence 58899999999998873 44453 244567889999999876543
No 250
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=27.47 E-value=28 Score=39.25 Aligned_cols=54 Identities=20% Similarity=0.387 Sum_probs=36.7
Q ss_pred ccccccC-ccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 429 SKCTACG-TDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 429 ~~C~~C~-~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
..|..|. -.+..++|..-|+.|+.-|=..|..-.+.-...+...-+-.|..|-.
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc
Confidence 4588887 67888999999999999875555543333222233445677888865
No 251
>PF14353 CpXC: CpXC protein
Probab=27.41 E-value=32 Score=31.41 Aligned_cols=25 Identities=32% Similarity=0.874 Sum_probs=17.8
Q ss_pred cccccCccccCc---------------------cccccccccCcee
Q 008295 430 KCTACGTDFSAF---------------------VRKHHCRNCGDIF 454 (571)
Q Consensus 430 ~C~~C~~~Fsl~---------------------~RKHHCR~CG~Vf 454 (571)
.|..|+..|... .-.+.|-+||..|
T Consensus 3 tCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKF 48 (128)
T ss_pred CCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCce
Confidence 588888877541 1268899998876
No 252
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=26.85 E-value=50 Score=41.19 Aligned_cols=9 Identities=44% Similarity=0.645 Sum_probs=4.0
Q ss_pred ccccccCcC
Q 008295 220 KLEPYGARG 228 (571)
Q Consensus 220 ~~~~~~~~~ 228 (571)
|.||-=.|.
T Consensus 300 kfeply~re 308 (2365)
T COG5178 300 KFEPLYSRE 308 (2365)
T ss_pred ccccccccc
Confidence 444444443
No 253
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=26.83 E-value=32 Score=26.18 Aligned_cols=30 Identities=20% Similarity=0.586 Sum_probs=23.4
Q ss_pred cccccCccccCcccccccccc-CceeccCCCCC
Q 008295 430 KCTACGTDFSAFVRKHHCRNC-GDIFCDKCTHG 461 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~C-G~VfC~~CS~~ 461 (571)
.|..|++ .++..|.+|..| ..-+|..|-..
T Consensus 2 ~Cd~C~~--~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQG--PIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCC--cCcCCeEECCCCCCccchHHhhCc
Confidence 5889998 556779999999 56688888653
No 254
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=26.46 E-value=39 Score=27.74 Aligned_cols=30 Identities=27% Similarity=0.694 Sum_probs=20.7
Q ss_pred cccccccCceeccCCCCCcEeccCCCCCCceeec-cccHHHHHHhhh
Q 008295 444 KHHCRNCGDIFCDKCTHGRIALTADANAQPVRVC-DRCMAEVTQRLS 489 (571)
Q Consensus 444 KHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC-~~Cy~~l~~r~~ 489 (571)
..||..||.- ++. ..+.| ..|.+.+.+++.
T Consensus 3 HkHC~~CG~~-----------Ip~-----~~~fCS~~C~~~~~k~qk 33 (59)
T PF09889_consen 3 HKHCPVCGKP-----------IPP-----DESFCSPKCREEYRKRQK 33 (59)
T ss_pred CCcCCcCCCc-----------CCc-----chhhhCHHHHHHHHHHHH
Confidence 4689999873 332 35889 599998766543
No 255
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=26.41 E-value=26 Score=26.38 Aligned_cols=9 Identities=44% Similarity=1.446 Sum_probs=4.0
Q ss_pred ccccCcccc
Q 008295 431 CTACGTDFS 439 (571)
Q Consensus 431 C~~C~~~Fs 439 (571)
|..|+..|.
T Consensus 8 C~~Cg~~fe 16 (42)
T PF09723_consen 8 CEECGHEFE 16 (42)
T ss_pred eCCCCCEEE
Confidence 444444443
No 256
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=26.02 E-value=32 Score=31.34 Aligned_cols=25 Identities=16% Similarity=0.457 Sum_probs=18.7
Q ss_pred CccccccCccccCccccccccccCc
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGD 452 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~ 452 (571)
.-.|..|+..|....+..-|-.||.
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs 94 (113)
T PRK12380 70 QAWCWDCSQVVEIHQHDAQCPHCHG 94 (113)
T ss_pred EEEcccCCCEEecCCcCccCcCCCC
Confidence 4579999998887655555777774
No 257
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=25.91 E-value=39 Score=29.73 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=10.1
Q ss_pred cccccCccccCccccccccccCc
Q 008295 430 KCTACGTDFSAFVRKHHCRNCGD 452 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~ 452 (571)
.|..|+..|........|+.||.
T Consensus 2 fC~~Cg~~l~~~~~~~~C~~C~~ 24 (104)
T TIGR01384 2 FCPKCGSLMTPKNGVYVCPSCGY 24 (104)
T ss_pred CCcccCcccccCCCeEECcCCCC
Confidence 35555555533323334444443
No 258
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=25.88 E-value=34 Score=31.80 Aligned_cols=27 Identities=30% Similarity=0.915 Sum_probs=16.0
Q ss_pred CccccccCccccCccc----cccccccCcee
Q 008295 428 VSKCTACGTDFSAFVR----KHHCRNCGDIF 454 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~R----KHHCR~CG~Vf 454 (571)
.-.|..|+..+....| ++.|+.||..+
T Consensus 123 ~~~C~~C~~~~~r~~~~~~~~~~C~~C~~~l 153 (157)
T PF10263_consen 123 VYRCPSCGREYKRHRRSKRKRYRCGRCGGPL 153 (157)
T ss_pred EEEcCCCCCEeeeecccchhhEECCCCCCEE
Confidence 4567778765543322 45677777543
No 259
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=25.45 E-value=38 Score=38.44 Aligned_cols=42 Identities=31% Similarity=0.771 Sum_probs=22.2
Q ss_pred CCCCCCCccCcCCccccc--cCccccCcccccccc--ccCceeccCCCCC
Q 008295 416 NEEKDHWVPDEAVSKCTA--CGTDFSAFVRKHHCR--NCGDIFCDKCTHG 461 (571)
Q Consensus 416 ~~~~~~WvpD~~~~~C~~--C~~~Fsl~~RKHHCR--~CG~VfC~~CS~~ 461 (571)
++.++.-..|...++|.. |+.+|.-| -|| .|=+-||..|...
T Consensus 446 VEIkPYv~eDq~CdeC~g~~c~~q~aPf----FC~n~~C~QYYCe~CWa~ 491 (520)
T KOG0129|consen 446 VEIKPYVMEDQLCDECGGRRCGGQFAPF----FCRNATCFQYYCESCWAK 491 (520)
T ss_pred eeecceeccccchhhhcCeeccCccCCc----ccCCccHHhhhchHHHHH
Confidence 344555557764555542 55577654 333 3445566666543
No 260
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=25.17 E-value=25 Score=25.37 Aligned_cols=30 Identities=30% Similarity=0.701 Sum_probs=19.4
Q ss_pred ccccCccccCccccccccccCceeccCCCCCcE
Q 008295 431 CTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (571)
Q Consensus 431 C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i 463 (571)
|.+|...|.... .=..||+.||..|....+
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~ 30 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWL 30 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHH
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHH
Confidence 556666554333 346788999998876544
No 261
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=24.85 E-value=26 Score=36.53 Aligned_cols=54 Identities=33% Similarity=0.623 Sum_probs=27.2
Q ss_pred ccccccCccc--cC-------ccccccccccC------ceeccCCCCCc-EeccC----CCCCCceeeccccHH
Q 008295 429 SKCTACGTDF--SA-------FVRKHHCRNCG------DIFCDKCTHGR-IALTA----DANAQPVRVCDRCMA 482 (571)
Q Consensus 429 ~~C~~C~~~F--sl-------~~RKHHCR~CG------~VfC~~CS~~~-i~Lp~----~~~~~pvRVC~~Cy~ 482 (571)
..|..|+..= +. -.|..||-.|| ++-|..|-+.. ..+.. ......+-||+.|..
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~ 246 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGS 246 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EEE--------SEEEEEETTTTE
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccc
Confidence 5899998642 11 24788999998 45788887632 22221 222345689999985
No 262
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=24.76 E-value=39 Score=31.92 Aligned_cols=27 Identities=22% Similarity=0.717 Sum_probs=17.4
Q ss_pred CccccccCccccCcc--------ccccccccCcee
Q 008295 428 VSKCTACGTDFSAFV--------RKHHCRNCGDIF 454 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~--------RKHHCR~CG~Vf 454 (571)
.-.|..|+.+|++.. ++..|..||..+
T Consensus 99 ~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l 133 (147)
T smart00531 99 YYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEEL 133 (147)
T ss_pred EEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEE
Confidence 557999999998632 224555555543
No 263
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=24.72 E-value=33 Score=26.09 Aligned_cols=30 Identities=23% Similarity=0.573 Sum_probs=21.9
Q ss_pred cccccCccccCccccccccccC-ceeccCCCCC
Q 008295 430 KCTACGTDFSAFVRKHHCRNCG-DIFCDKCTHG 461 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG-~VfC~~CS~~ 461 (571)
.|..|++ .+...|.||..|- .-+|.+|-..
T Consensus 2 ~C~~C~~--~i~g~r~~C~~C~d~dLC~~Cf~~ 32 (46)
T cd02249 2 SCDGCLK--PIVGVRYHCLVCEDFDLCSSCYAK 32 (46)
T ss_pred CCcCCCC--CCcCCEEECCCCCCCcCHHHHHCc
Confidence 5889988 3456789999997 4477777553
No 264
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=24.54 E-value=25 Score=26.94 Aligned_cols=23 Identities=35% Similarity=0.739 Sum_probs=14.0
Q ss_pred CccccccCccccCccccccccccC
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCG 451 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG 451 (571)
...|..|+.. .+...|.||..|-
T Consensus 4 ~~~C~~C~~~-~i~g~Ry~C~~C~ 26 (46)
T PF00569_consen 4 GYTCDGCGTD-PIIGVRYHCLVCP 26 (46)
T ss_dssp SCE-SSS-SS-SEESSEEEESSSS
T ss_pred CeECcCCCCC-cCcCCeEECCCCC
Confidence 3478888874 3445678888774
No 265
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=24.51 E-value=28 Score=38.68 Aligned_cols=27 Identities=30% Similarity=0.795 Sum_probs=23.6
Q ss_pred CccccccCccccCccccccccccCcee
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIF 454 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~Vf 454 (571)
...|..|++.|..-...++|+.||-.+
T Consensus 5 ~~rc~~cg~~f~~a~~~~~c~~cGl~l 31 (411)
T COG0498 5 SLRCLKCGREFSQALLQGLCPDCGLFL 31 (411)
T ss_pred EeecCCCCcchhhHHhhCcCCcCCccc
Confidence 358999999999777799999999875
No 266
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.35 E-value=35 Score=32.01 Aligned_cols=14 Identities=43% Similarity=0.907 Sum_probs=10.3
Q ss_pred CccccccCccccCc
Q 008295 428 VSKCTACGTDFSAF 441 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~ 441 (571)
.-.|..|+..|.+.
T Consensus 70 ~~~C~~CG~~~~~~ 83 (135)
T PRK03824 70 VLKCRNCGNEWSLK 83 (135)
T ss_pred EEECCCCCCEEecc
Confidence 45788888877765
No 267
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=24.28 E-value=15 Score=43.31 Aligned_cols=56 Identities=23% Similarity=0.587 Sum_probs=34.9
Q ss_pred CccccccCccccC-------------------------ccccccccccCceeccCC-CCCcEeccCCCCCCceeeccccH
Q 008295 428 VSKCTACGTDFSA-------------------------FVRKHHCRNCGDIFCDKC-THGRIALTADANAQPVRVCDRCM 481 (571)
Q Consensus 428 ~~~C~~C~~~Fsl-------------------------~~RKHHCR~CG~VfC~~C-S~~~i~Lp~~~~~~pvRVC~~Cy 481 (571)
.-.|+.|.-.|-. .+||..|.-||+.|=-++ .+-.+.| +.+.+| --|..|.
T Consensus 240 nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRI--HSGEKP-feCpnCk 316 (1007)
T KOG3623|consen 240 NFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHLRI--HSGEKP-FECPNCK 316 (1007)
T ss_pred CCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhhhHHHHHhhhee--ecCCCC-cCCcccc
Confidence 4459999887742 568999999999884433 1112222 223333 4589999
Q ss_pred HHHHH
Q 008295 482 AEVTQ 486 (571)
Q Consensus 482 ~~l~~ 486 (571)
+.++.
T Consensus 317 KRFSH 321 (1007)
T KOG3623|consen 317 KRFSH 321 (1007)
T ss_pred ccccc
Confidence 86543
No 268
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=24.18 E-value=42 Score=39.98 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=0.0
Q ss_pred ccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHHhhhhhhhhcCCccccchHHHHHHHHHHHHhhhcCCCCCCC
Q 008295 447 CRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRLSNAKEMANKPALQSHEDLARKLQEEMEKNRKSSSGSKS 526 (571)
Q Consensus 447 CR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~r~~sa~e~~sk~~lqs~e~laRkL~e~l~~~~~~S~gs~~ 526 (571)
||.||.+++=..|...+.+. .....-.|+.|-.. ...-..=.+..+. .+.....-+++++|++.+.--......+
T Consensus 438 C~~Cg~v~~Cp~Cd~~lt~H---~~~~~L~CH~Cg~~-~~~p~~Cp~Cgs~-~L~~~G~GterieeeL~~~FP~~rv~r~ 512 (730)
T COG1198 438 CRDCGYIAECPNCDSPLTLH---KATGQLRCHYCGYQ-EPIPQSCPECGSE-HLRAVGPGTERIEEELKRLFPGARIIRI 512 (730)
T ss_pred cccCCCcccCCCCCcceEEe---cCCCeeEeCCCCCC-CCCCCCCCCCCCC-eeEEecccHHHHHHHHHHHCCCCcEEEE
Q ss_pred CCCccccc
Q 008295 527 DGSGRRMR 534 (571)
Q Consensus 527 ~~s~~~~K 534 (571)
+.-....|
T Consensus 513 d~Dtt~~k 520 (730)
T COG1198 513 DSDTTRRK 520 (730)
T ss_pred ccccccch
No 269
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=24.12 E-value=15 Score=38.47 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=19.9
Q ss_pred ccccccCcCCCCCCCcccccccc
Q 008295 220 KLEPYGARGTVPKSSNSTLFDDY 242 (571)
Q Consensus 220 ~~~~~~~~~~~~~~~~~a~~~~~ 242 (571)
.|==|||||||..+|-.|++..|
T Consensus 87 nVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 87 NVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred ceEEecCCCCChHHHHHHHHHHH
Confidence 34568999999999999999888
No 270
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=24.06 E-value=46 Score=24.57 Aligned_cols=26 Identities=23% Similarity=0.543 Sum_probs=17.6
Q ss_pred CccccccCcccc-CccccccccccCce
Q 008295 428 VSKCTACGTDFS-AFVRKHHCRNCGDI 453 (571)
Q Consensus 428 ~~~C~~C~~~Fs-l~~RKHHCR~CG~V 453 (571)
...|..|+..|. ...++.-|..||.+
T Consensus 8 ~~~C~~C~~~~~~~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 8 NEPCPVCGSRWFYSDDGFYYCDRCGHQ 34 (36)
T ss_pred CCcCCCCCCeEeEccCCEEEhhhCceE
Confidence 345888976543 45677777777765
No 271
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=23.92 E-value=58 Score=23.83 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=7.9
Q ss_pred CCCCceeeccccH
Q 008295 469 ANAQPVRVCDRCM 481 (571)
Q Consensus 469 ~~~~pvRVC~~Cy 481 (571)
+..+.-.||..|-
T Consensus 17 gd~r~R~vC~~Cg 29 (34)
T PF14803_consen 17 GDDRERLVCPACG 29 (34)
T ss_dssp T-SS-EEEETTTT
T ss_pred CCCccceECCCCC
Confidence 3456678998884
No 272
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=23.74 E-value=36 Score=26.64 Aligned_cols=30 Identities=30% Similarity=0.830 Sum_probs=21.1
Q ss_pred cccccCccccCccccccccccC---ceeccCCCC
Q 008295 430 KCTACGTDFSAFVRKHHCRNCG---DIFCDKCTH 460 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG---~VfC~~CS~ 460 (571)
.|..|+.. .+...|.||-.|. .=+|..|-.
T Consensus 2 ~Cd~C~~~-pI~G~R~~C~~C~~~d~DlC~~C~~ 34 (48)
T cd02341 2 KCDSCGIE-PIPGTRYHCSECDDGDFDLCQDCVV 34 (48)
T ss_pred CCCCCCCC-ccccceEECCCCCCCCCccCHHHHh
Confidence 48888872 3457789999998 446666644
No 273
>COG1773 Rubredoxin [Energy production and conversion]
Probab=23.59 E-value=37 Score=27.63 Aligned_cols=12 Identities=25% Similarity=1.049 Sum_probs=10.9
Q ss_pred ccccccccCcee
Q 008295 443 RKHHCRNCGDIF 454 (571)
Q Consensus 443 RKHHCR~CG~Vf 454 (571)
+++.|+.||.||
T Consensus 2 ~~~~C~~CG~vY 13 (55)
T COG1773 2 KRWRCSVCGYVY 13 (55)
T ss_pred CceEecCCceEe
Confidence 589999999997
No 274
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=23.49 E-value=45 Score=28.01 Aligned_cols=29 Identities=28% Similarity=0.912 Sum_probs=14.0
Q ss_pred ccccccCccccCccccccc-cccCceeccCCCCC
Q 008295 429 SKCTACGTDFSAFVRKHHC-RNCGDIFCDKCTHG 461 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHC-R~CG~VfC~~CS~~ 461 (571)
..|..|.. +.|.-+| -.|.++||..|...
T Consensus 8 LrCs~C~~----~l~~pv~l~~CeH~fCs~Ci~~ 37 (65)
T PF14835_consen 8 LRCSICFD----ILKEPVCLGGCEHIFCSSCIRD 37 (65)
T ss_dssp TS-SSS-S------SS-B---SSS--B-TTTGGG
T ss_pred cCCcHHHH----HhcCCceeccCccHHHHHHhHH
Confidence 45666654 3556666 78999999999754
No 275
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=23.49 E-value=46 Score=25.13 Aligned_cols=30 Identities=30% Similarity=0.813 Sum_probs=19.9
Q ss_pred CccccccCccccCccccccccccCce-eccCCC
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDI-FCDKCT 459 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~V-fC~~CS 459 (571)
...|..|++ .++..|.||..|... +|..|-
T Consensus 4 ~~~C~~C~~--~i~g~ry~C~~C~d~dlC~~Cf 34 (44)
T smart00291 4 SYSCDTCGK--PIVGVRYHCLVCPDYDLCQSCF 34 (44)
T ss_pred CcCCCCCCC--CCcCCEEECCCCCCccchHHHH
Confidence 346999998 445667888888443 555553
No 276
>PF15616 TerY-C: TerY-C metal binding domain
Probab=23.42 E-value=38 Score=32.05 Aligned_cols=25 Identities=32% Similarity=1.036 Sum_probs=19.6
Q ss_pred CccccccCccccCccccccccccCceeccC
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDK 457 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~ 457 (571)
..-|..|+..|.+. -| .||+|+|-.
T Consensus 77 ~PgCP~CGn~~~fa----~C-~CGkl~Ci~ 101 (131)
T PF15616_consen 77 APGCPHCGNQYAFA----VC-GCGKLFCID 101 (131)
T ss_pred CCCCCCCcChhcEE----Ee-cCCCEEEeC
Confidence 35799999988765 46 799999854
No 277
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=23.20 E-value=37 Score=33.68 Aligned_cols=22 Identities=32% Similarity=0.806 Sum_probs=17.0
Q ss_pred ccccccCccccCccccccccccCc
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGD 452 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~ 452 (571)
..|..|.+.|. .-++-|--||.
T Consensus 140 ~rC~GC~~~f~--~~~~~Cp~CG~ 161 (177)
T COG1439 140 LRCHGCKRIFP--EPKDFCPICGS 161 (177)
T ss_pred EEEecCceecC--CCCCcCCCCCC
Confidence 38999999998 55676777765
No 278
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=23.17 E-value=54 Score=26.37 Aligned_cols=30 Identities=23% Similarity=0.665 Sum_probs=17.9
Q ss_pred CCC-C-ccCcCCccccccCccccCccccccccccC
Q 008295 419 KDH-W-VPDEAVSKCTACGTDFSAFVRKHHCRNCG 451 (571)
Q Consensus 419 ~~~-W-vpD~~~~~C~~C~~~Fsl~~RKHHCR~CG 451 (571)
+.+ | ........|..|+. +....|-|..||
T Consensus 15 Rah~~kl~~p~l~~C~~cG~---~~~~H~vc~~cG 46 (55)
T TIGR01031 15 RSHDAKLTAPTLVVCPNCGE---FKLPHRVCPSCG 46 (55)
T ss_pred hcCcccccCCcceECCCCCC---cccCeeECCccC
Confidence 344 6 44445678888887 233445566776
No 279
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=23.09 E-value=52 Score=28.02 Aligned_cols=53 Identities=23% Similarity=0.538 Sum_probs=26.8
Q ss_pred cccccCccccCccccccccccCce-----eccCCCCCcEeccCCCCCCceeeccccHHHH
Q 008295 430 KCTACGTDFSAFVRKHHCRNCGDI-----FCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~V-----fC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l 484 (571)
.|..|+........+.||-.|++- +|-+|-..-..|..=+ .---.|..|...+
T Consensus 3 ~CP~C~~~L~~~~~~~~C~~C~~~~~~~a~CPdC~~~Le~LkACG--AvdYFC~~c~gLi 60 (70)
T PF07191_consen 3 TCPKCQQELEWQGGHYHCEACQKDYKKEAFCPDCGQPLEVLKACG--AVDYFCNHCHGLI 60 (70)
T ss_dssp B-SSS-SBEEEETTEEEETTT--EEEEEEE-TTT-SB-EEEEETT--EEEEE-TTTT-EE
T ss_pred cCCCCCCccEEeCCEEECccccccceecccCCCcccHHHHHHHhc--ccceeeccCCcee
Confidence 588888887777778888888864 5667755443333211 1224566666543
No 280
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.86 E-value=17 Score=35.25 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=26.4
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEe
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIA 464 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~ 464 (571)
...|.+|-..|..- ..-.||+.||..|....+.
T Consensus 13 ~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~ 45 (386)
T KOG2177|consen 13 ELTCPICLEYFREP----VLLPCGHNFCRACLTRSWE 45 (386)
T ss_pred cccChhhHHHhhcC----ccccccchHhHHHHHHhcC
Confidence 45899999988766 5667999999999876554
No 281
>PRK12496 hypothetical protein; Provisional
Probab=22.48 E-value=47 Score=32.19 Aligned_cols=23 Identities=22% Similarity=0.681 Sum_probs=15.2
Q ss_pred cccccCccccCccccccccccCc
Q 008295 430 KCTACGTDFSAFVRKHHCRNCGD 452 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~ 452 (571)
.|..|++.|....-.--|-.||.
T Consensus 129 ~C~gC~~~~~~~~~~~~C~~CG~ 151 (164)
T PRK12496 129 VCKGCKKKYPEDYPDDVCEICGS 151 (164)
T ss_pred ECCCCCccccCCCCCCcCCCCCC
Confidence 68888888865433445666665
No 282
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.20 E-value=37 Score=37.22 Aligned_cols=32 Identities=28% Similarity=0.672 Sum_probs=23.7
Q ss_pred CccccccCccccCccc--cccccccCceeccCCCC
Q 008295 428 VSKCTACGTDFSAFVR--KHHCRNCGDIFCDKCTH 460 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~R--KHHCR~CG~VfC~~CS~ 460 (571)
...|..|+...-+..+ ..+|| ||.-||..|-.
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~ 339 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGG 339 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCc
Confidence 3578888765544443 56899 99999999964
No 283
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=21.85 E-value=16 Score=39.63 Aligned_cols=16 Identities=25% Similarity=0.600 Sum_probs=13.8
Q ss_pred CCccccccCccccCcc
Q 008295 427 AVSKCTACGTDFSAFV 442 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl~~ 442 (571)
.-++|.+|.+.|++|+
T Consensus 40 ~gkECKICtrPfT~Fr 55 (377)
T KOG0153|consen 40 YGKECKICTRPFTIFR 55 (377)
T ss_pred cCCccceecCcceEEE
Confidence 4679999999999885
No 284
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=21.78 E-value=84 Score=23.84 Aligned_cols=17 Identities=35% Similarity=0.892 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q 008295 104 APYQPPQQPPAFYPPFD 120 (571)
Q Consensus 104 ~~~~~~~~~~~~~~p~~ 120 (571)
+||||-+.++-|+.||.
T Consensus 20 gpyqp~peq~lypqpyq 36 (42)
T PF03875_consen 20 GPYQPFPEQPLYPQPYQ 36 (42)
T ss_pred CCcCCCCCCcCCCCCCC
Confidence 45666555545554443
No 285
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=21.73 E-value=44 Score=23.69 Aligned_cols=23 Identities=35% Similarity=1.047 Sum_probs=15.6
Q ss_pred ccccccCccccCccccccccccCceecc
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGDIFCD 456 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~VfC~ 456 (571)
..|..|+. ..|..|..||..+|+
T Consensus 3 ~~C~vC~~-----~~kY~Cp~C~~~~CS 25 (30)
T PF04438_consen 3 KLCSVCGN-----PAKYRCPRCGARYCS 25 (30)
T ss_dssp EEETSSSS-----EESEE-TTT--EESS
T ss_pred CCCccCcC-----CCEEECCCcCCceeC
Confidence 46788876 457899999999986
No 286
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=21.41 E-value=44 Score=30.47 Aligned_cols=25 Identities=16% Similarity=0.583 Sum_probs=17.6
Q ss_pred CccccccCccccCcccc-ccccccCc
Q 008295 428 VSKCTACGTDFSAFVRK-HHCRNCGD 452 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RK-HHCR~CG~ 452 (571)
.-.|..|+..|....+. -.|-.||.
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs 95 (114)
T PRK03681 70 ECWCETCQQYVTLLTQRVRRCPQCHG 95 (114)
T ss_pred EEEcccCCCeeecCCccCCcCcCcCC
Confidence 45799999988775443 44777774
No 287
>PRK14873 primosome assembly protein PriA; Provisional
Probab=21.36 E-value=51 Score=38.79 Aligned_cols=23 Identities=26% Similarity=0.651 Sum_probs=9.7
Q ss_pred cccccCccccCc--cccccccccCc
Q 008295 430 KCTACGTDFSAF--VRKHHCRNCGD 452 (571)
Q Consensus 430 ~C~~C~~~Fsl~--~RKHHCR~CG~ 452 (571)
.|..|...+++. .++-.|+.||.
T Consensus 394 ~C~~C~~~L~~h~~~~~l~Ch~CG~ 418 (665)
T PRK14873 394 RCRHCTGPLGLPSAGGTPRCRWCGR 418 (665)
T ss_pred ECCCCCCceeEecCCCeeECCCCcC
Confidence 344444444432 22344555554
No 288
>PRK06260 threonine synthase; Validated
Probab=21.31 E-value=53 Score=35.76 Aligned_cols=25 Identities=28% Similarity=0.772 Sum_probs=20.5
Q ss_pred ccccccCccccCccccccccccCce
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGDI 453 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~V 453 (571)
-.|..|++.|........|..||..
T Consensus 4 ~~C~~cg~~~~~~~~~~~Cp~cg~~ 28 (397)
T PRK06260 4 LKCIECGKEYDPDEIIYTCPECGGL 28 (397)
T ss_pred EEECCCCCCCCCCCccccCCCCCCe
Confidence 4799999999877667789889865
No 289
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=21.24 E-value=55 Score=35.05 Aligned_cols=45 Identities=27% Similarity=0.641 Sum_probs=29.4
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
...|..|+.....-.|- ..||..||+.|....+ | +---+|-.|..
T Consensus 274 ~LkCplc~~Llrnp~kT---~cC~~~fc~eci~~al-~------dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNPMKT---PCCGHTFCDECIGTAL-L------DSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCcccC---ccccchHHHHHHhhhh-h------hccccCCCccc
Confidence 47899998754322221 4699999999976432 2 12357888875
No 290
>PF07776 zf-AD: Zinc-finger associated domain (zf-AD) ; InterPro: IPR012934 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The zf-AD domain, also known as ZAD, forms an atypical treble-cleft-like zinc co-ordinating fold. The zf-AD domain is thought to be involved in mediating dimer formation, but does not bind to DNA []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 1PZW_A.
Probab=21.09 E-value=1.1e+02 Score=24.01 Aligned_cols=17 Identities=24% Similarity=0.659 Sum_probs=12.4
Q ss_pred CCceeeccccHHHHHHh
Q 008295 471 AQPVRVCDRCMAEVTQR 487 (571)
Q Consensus 471 ~~pvRVC~~Cy~~l~~r 487 (571)
..+..||..|+..+...
T Consensus 42 ~lp~~IC~~C~~~l~~~ 58 (75)
T PF07776_consen 42 DLPQQICSSCWEKLQQF 58 (75)
T ss_dssp SS-SEEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 35668999999987644
No 291
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=20.98 E-value=46 Score=37.11 Aligned_cols=33 Identities=21% Similarity=0.665 Sum_probs=26.7
Q ss_pred CccccccCccccCc---------cccccccccCceeccCCCC
Q 008295 428 VSKCTACGTDFSAF---------VRKHHCRNCGDIFCDKCTH 460 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~---------~RKHHCR~CG~VfC~~CS~ 460 (571)
.-.|..|+++|+.+ ....||..||.-+-..|+.
T Consensus 128 ~Y~Cp~C~kkyt~Lea~~L~~~~~~~F~C~~C~gelveDe~~ 169 (436)
T KOG2593|consen 128 GYVCPNCQKKYTSLEALQLLDNETGEFHCENCGGELVEDENK 169 (436)
T ss_pred cccCCccccchhhhHHHHhhcccCceEEEecCCCchhccccc
Confidence 34799999998742 3689999999988888875
No 292
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=20.97 E-value=48 Score=29.49 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=21.1
Q ss_pred CccccccCcc-cc-CccccccccccCceeccCCC
Q 008295 428 VSKCTACGTD-FS-AFVRKHHCRNCGDIFCDKCT 459 (571)
Q Consensus 428 ~~~C~~C~~~-Fs-l~~RKHHCR~CG~VfC~~CS 459 (571)
...|..|++. +. ...+.-+|+.||+.|-.-..
T Consensus 36 ~y~CpfCgk~~vkR~a~GIW~C~~C~~~~AGGAy 69 (90)
T PTZ00255 36 KYFCPFCGKHAVKRQAVGIWRCKGCKKTVAGGAW 69 (90)
T ss_pred CccCCCCCCCceeeeeeEEEEcCCCCCEEeCCcc
Confidence 4589999742 11 22345799999999865543
No 293
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=20.87 E-value=45 Score=25.87 Aligned_cols=29 Identities=21% Similarity=0.571 Sum_probs=19.0
Q ss_pred cccccCccccCccccccccccCce-eccCCC
Q 008295 430 KCTACGTDFSAFVRKHHCRNCGDI-FCDKCT 459 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~V-fC~~CS 459 (571)
.|..|+. +.+.-+|.+|..|-.. +|..|-
T Consensus 2 ~CDgCg~-~PI~G~RykC~~C~dyDLC~~C~ 31 (43)
T cd02342 2 QCDGCGV-LPITGPRYKSKVKEDYDLCTICF 31 (43)
T ss_pred CCCCCCC-CcccccceEeCCCCCCccHHHHh
Confidence 4777875 3456678888877554 555554
No 294
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=20.57 E-value=4.6e+02 Score=30.50 Aligned_cols=19 Identities=16% Similarity=-0.067 Sum_probs=10.0
Q ss_pred ccceEEEEeccCCchHHHHHHH
Q 008295 283 QKFRVKLLAESGGQSTMDVLCQ 304 (571)
Q Consensus 283 ~kTpLHlaa~~g~~~iv~vLlq 304 (571)
-.++.|+.... ++|..|.+
T Consensus 321 ~L~p~ec~sW~---~avaaL~~ 339 (582)
T PF03276_consen 321 ALTPNECGSWA---SAVAALYQ 339 (582)
T ss_pred ccCccccccHH---HHHHHHHH
Confidence 34566666553 44555544
No 295
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.57 E-value=47 Score=29.21 Aligned_cols=15 Identities=20% Similarity=0.456 Sum_probs=11.7
Q ss_pred ccccccCceeccCCC
Q 008295 445 HHCRNCGDIFCDKCT 459 (571)
Q Consensus 445 HHCR~CG~VfC~~CS 459 (571)
-.|+.||+|+|-.+.
T Consensus 74 ~~C~~Cg~i~~~~~~ 88 (116)
T cd07153 74 LICTKCGKVIDFEDC 88 (116)
T ss_pred eEeCCCCCEEEecCc
Confidence 459999999987654
No 296
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=20.56 E-value=26 Score=25.77 Aligned_cols=16 Identities=25% Similarity=0.735 Sum_probs=7.7
Q ss_pred ccccCccc-cCcccccc
Q 008295 431 CTACGTDF-SAFVRKHH 446 (571)
Q Consensus 431 C~~C~~~F-sl~~RKHH 446 (571)
|..|.+.+ +..+||+|
T Consensus 2 C~~C~~Ey~~p~~RR~~ 18 (35)
T PF07503_consen 2 CDDCLKEYFDPSNRRFH 18 (35)
T ss_dssp -HHHHHHHCSTTSTTTT
T ss_pred CHHHHHHHcCCCCCccc
Confidence 55555443 44555554
No 297
>PF06221 zf-C2HC5: Putative zinc finger motif, C2HC5-type; InterPro: IPR009349 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc finger appears to be common in activating signal cointegrator 1/thyroid receptor interacting protein 4. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.52 E-value=59 Score=26.58 Aligned_cols=18 Identities=39% Similarity=1.005 Sum_probs=13.2
Q ss_pred CccccccccccCceeccC
Q 008295 440 AFVRKHHCRNCGDIFCDK 457 (571)
Q Consensus 440 l~~RKHHCR~CG~VfC~~ 457 (571)
++.---+|-.||+|+|..
T Consensus 14 L~~~~~NCl~CGkIiC~~ 31 (57)
T PF06221_consen 14 LFPYAPNCLNCGKIICEQ 31 (57)
T ss_pred CccccccccccChhhccc
Confidence 333357899999999874
No 298
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=20.18 E-value=53 Score=25.96 Aligned_cols=26 Identities=27% Similarity=0.787 Sum_probs=17.9
Q ss_pred ccccccCccccC-----c---cccccccccCcee
Q 008295 429 SKCTACGTDFSA-----F---VRKHHCRNCGDIF 454 (571)
Q Consensus 429 ~~C~~C~~~Fsl-----~---~RKHHCR~CG~Vf 454 (571)
..|..|+..... + ....+|-.||+|.
T Consensus 23 ~~C~gC~~~l~~~~~~~i~~~~~i~~Cp~CgRiL 56 (56)
T PF02591_consen 23 GTCSGCHMELPPQELNEIRKGDEIVFCPNCGRIL 56 (56)
T ss_pred CccCCCCEEcCHHHHHHHHcCCCeEECcCCCccC
Confidence 489999876542 2 2357888888873
No 299
>PHA00732 hypothetical protein
Probab=20.18 E-value=70 Score=27.49 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=8.3
Q ss_pred cccccCccccC
Q 008295 430 KCTACGTDFSA 440 (571)
Q Consensus 430 ~C~~C~~~Fsl 440 (571)
.|..|++.|..
T Consensus 3 ~C~~Cgk~F~s 13 (79)
T PHA00732 3 KCPICGFTTVT 13 (79)
T ss_pred cCCCCCCccCC
Confidence 48888888864
No 300
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=20.09 E-value=49 Score=22.65 Aligned_cols=11 Identities=27% Similarity=0.754 Sum_probs=9.2
Q ss_pred cccCCCCCccc
Q 008295 557 IECGVCQHPFL 567 (571)
Q Consensus 557 ~~C~iCqq~F~ 567 (571)
+.|+||++.+.
T Consensus 2 v~CPiC~~~v~ 12 (26)
T smart00734 2 VQCPVCFREVP 12 (26)
T ss_pred CcCCCCcCccc
Confidence 57999999874
No 301
>PRK12366 replication factor A; Reviewed
Probab=20.07 E-value=46 Score=38.85 Aligned_cols=26 Identities=19% Similarity=0.583 Sum_probs=22.2
Q ss_pred CccccccCccccCccccccccccCce
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDI 453 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~V 453 (571)
...|..|+++...-.+..+|..||++
T Consensus 532 y~aCp~CnkKv~~~~g~~~C~~c~~~ 557 (637)
T PRK12366 532 LYLCPNCRKRVEEVDGEYICEFCGEV 557 (637)
T ss_pred EecccccCeEeEcCCCcEECCCCCCC
Confidence 46899999988766678899999998
No 302
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=20.01 E-value=48 Score=25.90 Aligned_cols=30 Identities=7% Similarity=0.085 Sum_probs=20.6
Q ss_pred cccccCccccCccccccccccCceeccCCCCCcE
Q 008295 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i 463 (571)
.|..|+..|.. --...||++||..|....+
T Consensus 3 ~Cpi~~~~~~~----Pv~~~~G~v~~~~~i~~~~ 32 (63)
T smart00504 3 LCPISLEVMKD----PVILPSGQTYERRAIEKWL 32 (63)
T ss_pred CCcCCCCcCCC----CEECCCCCEEeHHHHHHHH
Confidence 57777776553 2445789999998876543
Done!