Query 008295
Match_columns 571
No_of_seqs 355 out of 1305
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 22:49:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z2q_A LM5-1; membrane protein 99.8 1.6E-20 5.4E-25 159.3 4.7 70 417-486 10-79 (84)
2 1x4u_A Zinc finger, FYVE domai 99.8 2.9E-20 9.9E-25 157.6 5.7 69 419-487 5-79 (84)
3 2yw8_A RUN and FYVE domain-con 99.8 5.5E-20 1.9E-24 155.3 3.4 68 419-488 10-77 (82)
4 1vfy_A Phosphatidylinositol-3- 99.8 1.7E-19 5.7E-24 149.2 3.8 68 418-488 4-71 (73)
5 3t7l_A Zinc finger FYVE domain 99.7 8.9E-19 3E-23 150.5 5.7 68 418-487 10-77 (90)
6 1joc_A EEA1, early endosomal a 99.7 1.8E-18 6E-23 157.0 4.1 64 419-484 60-123 (125)
7 1wfk_A Zinc finger, FYVE domai 99.7 1.8E-17 6.1E-22 142.0 4.7 62 426-488 7-68 (88)
8 1dvp_A HRS, hepatocyte growth 99.7 3.1E-17 1.1E-21 160.9 4.7 67 417-486 153-219 (220)
9 3zyq_A Hepatocyte growth facto 99.6 5.3E-17 1.8E-21 160.3 3.4 67 417-486 156-222 (226)
10 1y02_A CARP2, FYVE-ring finger 99.6 1.4E-16 4.9E-21 143.7 5.1 62 417-486 8-69 (120)
11 3mpx_A FYVE, rhogef and PH dom 99.5 1.2E-15 4.2E-20 161.1 0.0 68 418-486 365-432 (434)
12 1n0q_A 3ANK, 3 ankyrin repeats 99.3 1.5E-13 5.3E-18 113.2 -1.5 78 229-327 1-78 (93)
13 4gpm_A Engineered protein OR26 99.3 2E-13 6.7E-18 127.0 -1.4 65 262-327 82-146 (169)
14 3aaa_C Myotrophin, protein V-1 99.2 9.4E-13 3.2E-17 113.3 -1.5 61 263-324 53-113 (123)
15 4b93_B Ankyrin repeat domain-c 99.2 3E-12 1E-16 126.7 0.0 64 260-324 162-225 (269)
16 1bi7_B P16INK4A, MTS1, multipl 99.1 4.2E-12 1.4E-16 113.9 -0.3 66 261-327 55-121 (156)
17 3c5r_A BARD-1, BRCA1-associate 99.1 4.1E-12 1.4E-16 111.1 -0.8 65 262-327 55-119 (137)
18 2l6b_A NR1C; ankyrin, consensu 99.1 3.3E-12 1.1E-16 108.4 -1.4 79 229-328 8-86 (115)
19 1d9s_A Cyclin-dependent kinase 99.1 6.2E-12 2.1E-16 110.3 0.0 61 263-324 57-118 (136)
20 2zgd_A 3 repeat synthetic anky 99.1 2.4E-12 8.3E-17 109.8 -3.3 80 227-327 21-100 (110)
21 2jab_A H10-2-G3; HER2, darpin, 99.1 5.9E-12 2E-16 110.4 -1.7 83 224-327 8-90 (136)
22 4gpm_A Engineered protein OR26 99.1 7.5E-12 2.6E-16 116.3 -1.2 80 228-328 35-114 (169)
23 1dcq_A PYK2-associated protein 99.1 6.9E-12 2.3E-16 125.1 -1.9 82 228-327 167-248 (278)
24 3c5r_A BARD-1, BRCA1-associate 99.1 4.6E-12 1.6E-16 110.7 -3.2 80 228-328 8-87 (137)
25 1d9s_A Cyclin-dependent kinase 99.1 1.5E-11 5E-16 107.9 -0.1 80 227-328 9-89 (136)
26 3twr_A Tankyrase-2; ankyrin re 99.0 1.5E-11 5.3E-16 110.2 -0.7 79 228-327 40-118 (165)
27 3deo_A Signal recognition part 99.0 1.3E-11 4.4E-16 113.7 -1.4 61 263-324 89-150 (183)
28 3ehr_A Osteoclast-stimulating 99.0 1.5E-11 5.3E-16 115.9 -1.2 78 229-327 72-150 (222)
29 2jab_A H10-2-G3; HER2, darpin, 99.0 5.4E-12 1.9E-16 110.6 -4.0 79 228-327 45-123 (136)
30 3aaa_C Myotrophin, protein V-1 99.0 9.4E-12 3.2E-16 107.0 -2.7 77 230-327 7-83 (123)
31 1s70_B 130 kDa myosin-binding 99.0 2.8E-11 9.4E-16 117.9 0.1 77 228-325 197-273 (299)
32 1awc_B Protein (GA binding pro 99.0 2.3E-11 7.7E-16 108.3 -0.8 64 263-327 47-110 (153)
33 3t8k_A Uncharacterized protein 99.0 2E-11 6.9E-16 114.9 -1.4 81 229-326 37-124 (186)
34 1oy3_D Transcription factor in 99.0 1.5E-11 5.2E-16 117.9 -2.5 81 227-328 155-236 (282)
35 3f6q_A Integrin-linked protein 99.0 3.5E-11 1.2E-15 109.7 0.0 79 228-327 37-115 (179)
36 3lvq_E ARF-GAP with SH3 domain 99.0 2.8E-11 9.7E-16 129.7 -1.1 84 227-328 168-251 (497)
37 1oy3_D Transcription factor in 99.0 4.4E-11 1.5E-15 114.7 -0.1 77 230-327 192-268 (282)
38 3ui2_A Signal recognition part 99.0 3.1E-11 1.1E-15 117.0 -1.3 61 263-324 90-151 (244)
39 4hbd_A KN motif and ankyrin re 99.0 3E-11 1E-15 119.2 -1.5 68 259-327 192-260 (276)
40 3jxi_A Vanilloid receptor-rela 99.0 3E-11 1E-15 115.9 -1.6 77 229-326 92-185 (260)
41 2dzn_A Probable 26S proteasome 99.0 5.2E-11 1.8E-15 111.2 -0.0 78 229-327 106-184 (228)
42 3f6q_A Integrin-linked protein 99.0 3.7E-11 1.3E-15 109.6 -1.0 66 262-328 17-83 (179)
43 3twr_A Tankyrase-2; ankyrin re 99.0 5.4E-11 1.9E-15 106.6 -0.1 61 263-324 88-148 (165)
44 1ihb_A P18-INK4C(INK6), cyclin 99.0 3.5E-11 1.2E-15 107.0 -1.5 64 263-327 50-113 (162)
45 3t8k_A Uncharacterized protein 99.0 2.2E-11 7.6E-16 114.6 -3.0 86 227-327 72-164 (186)
46 3v30_A DNA-binding protein rfx 99.0 4.9E-11 1.7E-15 107.6 -0.7 79 228-327 34-112 (172)
47 1ycs_B 53BP2, P53BP2; ankyrin 99.0 3.9E-11 1.3E-15 115.3 -1.6 78 229-327 36-113 (239)
48 1ikn_D Protein (I-kappa-B-alph 99.0 6E-11 2E-15 112.4 -0.4 70 257-327 124-194 (236)
49 2etb_A Transient receptor pote 99.0 4.7E-11 1.6E-15 114.5 -1.1 77 229-326 89-181 (256)
50 1awc_B Protein (GA binding pro 98.9 4.7E-11 1.6E-15 106.2 -1.5 69 257-326 74-142 (153)
51 1k1a_A B-cell lymphoma 3-encod 98.9 6.8E-11 2.3E-15 111.1 -0.6 63 261-324 161-223 (241)
52 1ihb_A P18-INK4C(INK6), cyclin 98.9 6.1E-11 2.1E-15 105.5 -1.0 64 262-327 17-80 (162)
53 2rfm_A Putative ankyrin repeat 98.9 5.1E-11 1.7E-15 109.6 -1.6 79 228-327 66-144 (192)
54 2pnn_A Transient receptor pote 98.9 6E-11 2E-15 115.1 -1.2 77 229-326 100-193 (273)
55 3v30_A DNA-binding protein rfx 98.9 5.2E-11 1.8E-15 107.5 -1.7 78 230-328 2-80 (172)
56 4b93_B Ankyrin repeat domain-c 98.9 7.1E-11 2.4E-15 116.8 -1.2 100 228-328 84-196 (269)
57 2y1l_E Darpin-8.4; hydrolase-i 98.9 7.2E-11 2.5E-15 106.9 -1.1 78 229-327 46-123 (169)
58 3v31_A Ankyrin repeat family A 98.9 8.6E-11 2.9E-15 105.5 -0.9 79 228-327 1-79 (167)
59 2vge_A RELA-associated inhibit 98.9 1E-10 3.6E-15 112.8 -0.3 64 263-327 34-97 (229)
60 2rfa_A Transient receptor pote 98.9 8.1E-11 2.8E-15 110.7 -1.2 71 257-328 82-165 (232)
61 1ycs_B 53BP2, P53BP2; ankyrin 98.9 5.4E-11 1.9E-15 114.3 -2.5 63 263-327 18-80 (239)
62 1bd8_A P19INK4D CDK4/6 inhibit 98.9 6.8E-11 2.3E-15 104.8 -1.8 64 263-327 48-111 (156)
63 1bd8_A P19INK4D CDK4/6 inhibit 98.9 1.5E-10 5.1E-15 102.6 0.3 63 263-327 15-78 (156)
64 2b0o_E UPLC1; arfgap, structur 98.9 6.6E-11 2.2E-15 119.4 -2.3 83 227-327 187-269 (301)
65 2y1l_E Darpin-8.4; hydrolase-i 98.9 9E-11 3.1E-15 106.3 -1.2 90 225-335 9-101 (169)
66 1bi7_B P16INK4A, MTS1, multipl 98.9 1.3E-10 4.6E-15 104.0 -0.1 78 228-327 10-88 (156)
67 3utm_A Tankyrase-1; tankyrase, 98.9 1E-10 3.5E-15 115.1 -1.0 84 226-327 207-290 (351)
68 1yyh_A HN1;, notch 1, ankyrin 98.9 8.4E-11 2.9E-15 113.2 -1.6 80 227-327 121-200 (253)
69 2l6b_A NR1C; ankyrin, consensu 98.9 1.8E-10 6E-15 97.7 0.5 71 229-320 41-111 (115)
70 1n0r_A 4ANK, 4 ankyrin repeats 98.9 9.3E-11 3.2E-15 99.0 -1.3 61 263-324 48-108 (126)
71 3b7b_A Euchromatic histone-lys 98.9 1.2E-10 4.2E-15 109.6 -0.7 79 228-327 109-187 (237)
72 2rfm_A Putative ankyrin repeat 98.9 9.2E-11 3.2E-15 107.9 -1.7 79 228-327 33-111 (192)
73 3v31_A Ankyrin repeat family A 98.9 9.3E-11 3.2E-15 105.3 -1.7 78 229-327 35-112 (167)
74 3ehr_A Osteoclast-stimulating 98.9 8.1E-11 2.8E-15 110.9 -2.7 71 256-327 112-183 (222)
75 2xai_A ASB-9, ankyrin repeat a 98.9 1.2E-10 4.3E-15 112.8 -1.8 79 229-328 2-80 (261)
76 3jue_A Arfgap with coiled-coil 98.9 1.6E-10 5.6E-15 120.8 -1.2 65 262-327 247-311 (368)
77 2etb_A Transient receptor pote 98.9 7.4E-11 2.5E-15 113.1 -3.8 77 230-327 136-231 (256)
78 3ui2_A Signal recognition part 98.9 8.1E-11 2.8E-15 114.0 -3.6 78 229-328 44-122 (244)
79 1n0r_A 4ANK, 4 ankyrin repeats 98.9 1.3E-10 4.6E-15 98.0 -2.0 79 229-328 1-79 (126)
80 2vge_A RELA-associated inhibit 98.8 9.1E-11 3.1E-15 113.2 -3.7 96 228-324 19-128 (229)
81 1n0q_A 3ANK, 3 ankyrin repeats 98.8 2.3E-10 7.8E-15 94.0 -0.8 61 228-308 33-93 (93)
82 3aji_A 26S proteasome non-ATPa 98.8 2.2E-10 7.4E-15 107.4 -1.1 79 228-327 104-182 (231)
83 1n11_A Ankyrin; clathrin, BAND 98.8 2.3E-10 7.9E-15 118.1 -1.0 79 228-327 276-354 (437)
84 3utm_A Tankyrase-1; tankyrase, 98.8 2.4E-10 8.4E-15 112.4 -0.9 79 228-327 56-134 (351)
85 2rfa_A Transient receptor pote 98.8 2.4E-10 8.1E-15 107.5 -1.2 79 229-327 120-207 (232)
86 3ljn_A Hypothetical protein; a 98.8 2.2E-10 7.6E-15 115.6 -1.6 66 260-326 183-253 (364)
87 1yyh_A HN1;, notch 1, ankyrin 98.8 2.1E-10 7.1E-15 110.5 -1.8 80 228-328 88-168 (253)
88 3jxi_A Vanilloid receptor-rela 98.8 1E-10 3.6E-15 112.1 -3.9 79 228-327 138-235 (260)
89 2dzn_A Probable 26S proteasome 98.8 2.3E-10 7.9E-15 106.8 -1.4 80 228-328 70-151 (228)
90 3deo_A Signal recognition part 98.8 1.4E-10 4.6E-15 106.9 -3.1 78 229-328 43-121 (183)
91 1s70_B 130 kDa myosin-binding 98.8 2.8E-10 9.4E-15 110.9 -1.2 65 262-327 85-149 (299)
92 2f8y_A Notch homolog 1, transl 98.8 2.6E-10 8.7E-15 106.4 -1.4 79 228-327 90-168 (223)
93 3b7b_A Euchromatic histone-lys 98.8 2.5E-10 8.6E-15 107.4 -2.1 80 228-328 75-155 (237)
94 2xai_A ASB-9, ankyrin repeat a 98.8 3.7E-10 1.3E-14 109.4 -1.0 77 227-325 98-174 (261)
95 3d9h_A CDNA FLJ77766, highly s 98.8 4.9E-10 1.7E-14 110.6 -0.6 83 224-327 53-135 (285)
96 1sw6_A Regulatory protein SWI6 98.8 3.7E-10 1.2E-14 114.0 -1.8 50 275-325 275-324 (327)
97 3ljn_A Hypothetical protein; a 98.8 4.2E-10 1.4E-14 113.6 -1.6 83 228-328 136-222 (364)
98 3hra_A Ankyrin repeat family p 98.8 6.6E-10 2.3E-14 101.9 -0.1 77 228-325 70-148 (201)
99 2pnn_A Transient receptor pote 98.8 2E-10 6.7E-15 111.4 -4.1 78 229-327 147-243 (273)
100 2f8y_A Notch homolog 1, transl 98.8 5.2E-10 1.8E-14 104.3 -1.1 80 228-328 56-136 (223)
101 3aji_A 26S proteasome non-ATPa 98.8 3.6E-10 1.2E-14 105.9 -2.3 80 228-328 71-150 (231)
102 2fo1_E LIN-12 protein; beta-ba 98.8 5.7E-10 1.9E-14 114.4 -1.1 78 229-327 278-356 (373)
103 3d9h_A CDNA FLJ77766, highly s 98.8 8.4E-10 2.9E-14 108.9 -0.3 79 227-327 154-232 (285)
104 3kea_A K1L; tropism, ANK repea 98.8 6.7E-10 2.3E-14 109.8 -1.1 77 228-327 29-105 (285)
105 3kea_A K1L; tropism, ANK repea 98.7 4.7E-10 1.6E-14 110.9 -2.4 79 229-328 61-140 (285)
106 1k1a_A B-cell lymphoma 3-encod 98.7 8E-10 2.7E-14 103.7 -1.3 69 258-327 124-193 (241)
107 3hra_A Ankyrin repeat family p 98.7 1.1E-09 3.8E-14 100.4 -1.0 78 229-327 38-116 (201)
108 1n11_A Ankyrin; clathrin, BAND 98.7 9.1E-10 3.1E-14 113.6 -1.8 100 227-327 11-123 (437)
109 1wdy_A 2-5A-dependent ribonucl 98.7 1.4E-09 4.7E-14 103.7 -1.3 79 229-328 38-116 (285)
110 1sw6_A Regulatory protein SWI6 98.7 1.9E-09 6.4E-14 108.8 -0.4 67 260-327 107-174 (327)
111 4hbd_A KN motif and ankyrin re 98.7 1.2E-09 4.3E-14 107.6 -1.7 69 259-328 159-227 (276)
112 2b0o_E UPLC1; arfgap, structur 98.7 1.2E-09 4E-14 110.3 -2.5 72 228-326 224-295 (301)
113 1ikn_D Protein (I-kappa-B-alph 98.7 1.9E-09 6.4E-14 102.0 -1.0 69 260-328 55-128 (236)
114 3jue_A Arfgap with coiled-coil 98.7 1.1E-09 3.8E-14 114.5 -3.1 67 261-328 211-279 (368)
115 4g8k_A 2-5A-dependent ribonucl 98.6 2E-09 7E-14 107.4 -1.3 70 257-327 32-102 (337)
116 2fo1_E LIN-12 protein; beta-ba 98.6 1.6E-09 5.3E-14 111.2 -2.2 71 257-328 132-210 (373)
117 1wdy_A 2-5A-dependent ribonucl 98.6 2.7E-09 9.3E-14 101.6 -0.9 63 263-326 199-262 (285)
118 4g8k_A 2-5A-dependent ribonucl 98.6 2.8E-09 9.5E-14 106.4 -2.0 101 227-328 165-284 (337)
119 3lvq_E ARF-GAP with SH3 domain 98.5 6.9E-09 2.4E-13 111.2 -1.7 69 259-328 141-218 (497)
120 3eu9_A Huntingtin-interacting 98.5 5.7E-09 2E-13 97.1 -2.0 79 228-327 107-187 (240)
121 1dcq_A PYK2-associated protein 98.5 1.4E-08 4.6E-13 101.2 -0.2 61 228-308 203-263 (278)
122 3eu9_A Huntingtin-interacting 98.5 8.6E-09 3E-13 95.9 -1.6 67 258-325 84-150 (240)
123 2zgd_A 3 repeat synthetic anky 98.2 1.2E-07 4.2E-12 80.5 -1.7 54 229-302 56-109 (110)
124 2aja_A Ankyrin repeat family p 98.1 2E-08 6.8E-13 105.2 -9.4 69 257-327 135-209 (376)
125 2aja_A Ankyrin repeat family p 97.8 1.8E-07 6.1E-12 98.0 -8.5 63 257-327 170-235 (376)
126 2vrw_B P95VAV, VAV1, proto-onc 97.6 1.4E-05 4.9E-10 83.7 2.4 42 419-460 348-390 (406)
127 3ky9_A Proto-oncogene VAV; cal 95.2 0.0071 2.4E-07 66.7 2.5 43 419-461 520-563 (587)
128 1zbd_B Rabphilin-3A; G protein 94.7 0.029 9.9E-07 51.3 4.8 54 427-484 54-108 (134)
129 1wff_A Riken cDNA 2810002D23 p 94.4 0.033 1.1E-06 47.3 4.0 37 420-458 16-53 (85)
130 1wfp_A Zinc finger (AN1-like) 94.1 0.036 1.2E-06 45.9 3.6 28 428-458 25-52 (74)
131 2zet_C Melanophilin; complex, 94.0 0.028 9.7E-07 52.4 3.1 50 428-484 68-118 (153)
132 1wfh_A Zinc finger (AN1-like) 93.9 0.035 1.2E-06 44.8 3.1 28 428-458 15-42 (64)
133 1wfl_A Zinc finger protein 216 93.3 0.077 2.6E-06 44.0 4.2 28 428-458 25-52 (74)
134 1z2q_A LM5-1; membrane protein 93.2 0.053 1.8E-06 45.4 3.2 35 529-571 2-36 (84)
135 1wg2_A Zinc finger (AN1-like) 92.2 0.089 3E-06 42.4 3.1 28 428-458 15-42 (64)
136 1x4w_A Hypothetical protein FL 90.1 0.11 3.6E-06 42.4 1.6 30 428-458 15-45 (67)
137 1x4u_A Zinc finger, FYVE domai 85.6 0.4 1.4E-05 39.9 2.5 21 551-571 9-29 (84)
138 2yw8_A RUN and FYVE domain-con 83.7 0.47 1.6E-05 39.3 2.1 21 551-571 14-34 (82)
139 1z60_A TFIIH basal transcripti 82.1 0.19 6.5E-06 39.9 -0.9 31 429-460 16-46 (59)
140 2e72_A POGO transposable eleme 81.5 0.35 1.2E-05 36.9 0.4 34 420-454 5-40 (49)
141 2csz_A Synaptotagmin-like prot 79.9 0.87 3E-05 37.9 2.3 47 428-482 25-72 (76)
142 2ecm_A Ring finger and CHY zin 78.7 1.1 3.8E-05 32.9 2.4 37 427-463 4-40 (55)
143 3l11_A E3 ubiquitin-protein li 77.8 0.67 2.3E-05 39.8 1.1 47 428-485 15-61 (115)
144 1iym_A EL5; ring-H2 finger, ub 76.4 1.5 5E-05 32.3 2.5 35 428-462 5-39 (55)
145 3t7l_A Zinc finger FYVE domain 75.2 1.3 4.5E-05 37.3 2.2 21 551-571 15-35 (90)
146 1twf_L ABC10-alpha, DNA-direct 71.2 2.6 8.9E-05 34.4 2.9 30 428-457 28-59 (70)
147 1x4v_A Hypothetical protein LO 70.6 1.6 5.6E-05 34.9 1.6 28 428-458 12-41 (63)
148 2ct2_A Tripartite motif protei 70.4 1.8 6.3E-05 34.7 1.9 50 428-482 15-64 (88)
149 1bor_A Transcription factor PM 70.0 3.4 0.00012 31.1 3.2 31 427-461 5-35 (56)
150 2ysl_A Tripartite motif-contai 69.9 1 3.4E-05 35.2 0.2 46 428-482 20-65 (73)
151 2ct7_A Ring finger protein 31; 69.6 3.1 0.00011 34.5 3.2 33 428-460 25-59 (86)
152 1wys_A Riken cDNA 2310008M20 p 67.4 2.8 9.6E-05 34.7 2.4 29 428-459 14-44 (75)
153 2ysj_A Tripartite motif-contai 66.7 3.7 0.00013 31.1 2.9 32 428-463 20-51 (63)
154 2ecv_A Tripartite motif-contai 65.1 3 0.0001 33.0 2.1 50 428-483 19-68 (85)
155 2egp_A Tripartite motif-contai 64.7 2.1 7.3E-05 33.7 1.2 51 428-483 12-62 (79)
156 1joc_A EEA1, early endosomal a 64.7 2.3 7.9E-05 38.0 1.5 21 551-571 64-84 (125)
157 2a20_A Regulating synaptic mem 64.7 6.9 0.00023 31.1 4.0 51 427-482 8-59 (62)
158 1wd2_A Ariadne-1 protein homol 63.5 5.1 0.00018 31.4 3.1 34 428-461 6-43 (60)
159 4gzn_C ZFP-57, zinc finger pro 63.4 3 0.0001 32.1 1.8 26 430-455 6-43 (60)
160 3lrq_A E3 ubiquitin-protein li 62.7 2.1 7.3E-05 36.0 0.9 46 429-484 23-68 (100)
161 2ep4_A Ring finger protein 24; 62.3 3 0.0001 32.6 1.6 46 428-482 15-60 (74)
162 2ect_A Ring finger protein 126 62.2 5.6 0.00019 31.3 3.2 47 428-483 15-61 (78)
163 2d8t_A Dactylidin, ring finger 60.4 2.8 9.5E-05 32.7 1.1 44 428-483 15-58 (71)
164 1v87_A Deltex protein 2; ring- 59.3 1.6 5.4E-05 37.2 -0.6 53 429-484 26-92 (114)
165 3fl2_A E3 ubiquitin-protein li 59.3 1.3 4.4E-05 38.6 -1.2 44 429-483 53-96 (124)
166 2ea6_A Ring finger protein 4; 59.1 2.2 7.6E-05 32.5 0.3 37 427-463 14-53 (69)
167 2lce_A B-cell lymphoma 6 prote 58.8 6.8 0.00023 29.8 3.1 13 428-440 17-29 (74)
168 2ecj_A Tripartite motif-contai 58.4 3.9 0.00013 30.1 1.6 31 428-462 15-45 (58)
169 1x4j_A Ring finger protein 38; 57.8 4 0.00014 32.1 1.6 36 427-463 22-57 (75)
170 2ecl_A Ring-box protein 2; RNF 57.3 4.8 0.00016 32.6 2.0 43 420-462 7-60 (81)
171 2lv2_A Insulinoma-associated p 57.0 4.5 0.00015 33.3 1.9 13 428-440 28-40 (85)
172 3ng2_A RNF4, snurf, ring finge 56.3 2.6 8.8E-05 32.5 0.2 36 428-463 10-48 (71)
173 3uk3_C Zinc finger protein 217 55.7 6.3 0.00021 28.2 2.3 12 429-440 5-16 (57)
174 3j21_g 50S ribosomal protein L 55.2 3.7 0.00013 31.6 0.9 24 428-453 14-37 (51)
175 1vfy_A Phosphatidylinositol-3- 55.0 5.8 0.0002 31.9 2.2 25 536-571 2-26 (73)
176 2djb_A Polycomb group ring fin 54.3 4 0.00014 31.9 1.1 44 428-482 15-58 (72)
177 2kiz_A E3 ubiquitin-protein li 53.8 5.7 0.00019 30.5 1.9 35 428-463 14-48 (69)
178 1jm7_B BARD1, BRCA1-associated 53.2 4.6 0.00016 34.7 1.4 43 428-483 22-64 (117)
179 1bbo_A Human enhancer-binding 52.4 7.7 0.00026 27.7 2.3 11 430-440 3-13 (57)
180 2yur_A Retinoblastoma-binding 52.3 6.3 0.00022 31.0 2.0 46 428-482 15-60 (74)
181 1jm7_A BRCA1, breast cancer ty 52.2 4.5 0.00016 33.9 1.1 46 429-483 22-67 (112)
182 2jrp_A Putative cytoplasmic pr 52.1 2.4 8.3E-05 35.6 -0.6 54 429-484 3-61 (81)
183 1chc_A Equine herpes virus-1 r 51.8 6.3 0.00022 30.1 1.8 45 428-483 5-49 (68)
184 2cot_A Zinc finger protein 435 51.4 16 0.00054 27.9 4.1 13 428-440 18-30 (77)
185 2ckl_B Ubiquitin ligase protei 51.1 4.2 0.00014 37.0 0.8 47 428-484 54-100 (165)
186 2jmo_A Parkin; IBR, E3 ligase, 50.8 15 0.0005 30.1 4.0 33 428-460 25-66 (80)
187 2adr_A ADR1; transcription reg 50.5 8.2 0.00028 27.9 2.2 11 430-440 4-14 (60)
188 3j20_Y 30S ribosomal protein S 50.2 6.2 0.00021 30.0 1.5 27 428-454 19-47 (50)
189 3cc2_Z 50S ribosomal protein L 49.7 4.6 0.00016 36.0 0.8 30 428-457 60-91 (116)
190 2gqj_A Zinc finger protein KIA 49.2 3.5 0.00012 33.7 -0.0 12 428-439 24-35 (98)
191 2ecn_A Ring finger protein 141 49.1 5.8 0.0002 30.5 1.2 44 428-484 15-58 (70)
192 2xeu_A Ring finger protein 4; 48.9 4 0.00014 30.5 0.3 36 428-463 3-41 (64)
193 2l0b_A E3 ubiquitin-protein li 48.6 4.6 0.00016 33.3 0.6 36 427-463 39-74 (91)
194 2ecy_A TNF receptor-associated 48.6 4.6 0.00016 30.9 0.6 32 428-463 15-46 (66)
195 1x5w_A Zinc finger protein 64, 48.6 7.9 0.00027 29.1 1.9 12 429-440 10-21 (70)
196 2ecw_A Tripartite motif-contai 47.4 5.5 0.00019 31.4 0.9 50 428-483 19-68 (85)
197 1vd4_A Transcription initiatio 47.3 4.7 0.00016 30.3 0.4 29 428-456 14-51 (62)
198 1x6e_A Zinc finger protein 24; 47.2 8.3 0.00028 29.2 1.9 13 428-440 14-26 (72)
199 2csy_A Zinc finger protein 183 47.1 6.9 0.00024 31.1 1.4 43 428-482 15-57 (81)
200 1wfe_A Riken cDNA 2310008M20 p 46.6 8 0.00028 32.6 1.8 28 428-458 25-54 (86)
201 2eps_A POZ-, at HOOK-, and zin 45.7 8.7 0.0003 27.7 1.7 12 429-440 13-24 (54)
202 2d9h_A Zinc finger protein 692 45.4 7.8 0.00027 29.7 1.4 12 429-440 8-19 (78)
203 1t1h_A Gspef-atpub14, armadill 45.2 5.9 0.0002 31.2 0.7 44 428-482 8-51 (78)
204 1g25_A CDK-activating kinase a 44.7 5.2 0.00018 30.5 0.3 34 429-462 4-38 (65)
205 2ayj_A 50S ribosomal protein L 44.4 6.7 0.00023 30.8 0.9 23 428-452 19-41 (56)
206 2y43_A E3 ubiquitin-protein li 44.3 6.6 0.00022 32.5 0.9 44 429-483 23-66 (99)
207 2lcq_A Putative toxin VAPC6; P 44.3 7.5 0.00026 35.6 1.4 25 429-453 133-157 (165)
208 1vq8_Z 50S ribosomal protein L 43.9 6.2 0.00021 33.1 0.7 31 428-458 27-59 (83)
209 1pft_A TFIIB, PFTFIIBN; N-term 42.6 11 0.00037 28.0 1.8 28 428-455 5-35 (50)
210 3jyw_9 60S ribosomal protein L 42.5 10 0.00034 31.2 1.7 28 428-457 26-57 (72)
211 2ckl_A Polycomb group ring fin 41.8 7.2 0.00025 32.9 0.8 46 428-484 15-60 (108)
212 3j21_i 50S ribosomal protein L 41.6 8.7 0.0003 32.4 1.2 28 428-457 35-66 (83)
213 4a0k_B E3 ubiquitin-protein li 40.3 6.1 0.00021 35.0 0.1 56 421-484 41-110 (117)
214 2ct1_A Transcriptional repress 40.1 12 0.00042 28.6 1.8 13 428-440 15-27 (77)
215 3mpx_A FYVE, rhogef and PH dom 39.8 7.5 0.00026 40.4 0.7 21 551-571 370-390 (434)
216 2ctd_A Zinc finger protein 512 39.6 8.5 0.00029 31.8 0.9 10 429-438 35-44 (96)
217 3iz5_m 60S ribosomal protein L 39.6 11 0.00037 32.4 1.5 27 429-457 37-67 (92)
218 3izc_m 60S ribosomal protein R 36.2 13 0.00046 31.8 1.6 28 428-457 36-67 (92)
219 3ztg_A E3 ubiquitin-protein li 35.9 10 0.00035 30.7 0.8 46 428-482 13-58 (92)
220 4ap4_A E3 ubiquitin ligase RNF 35.5 8.1 0.00028 32.9 0.1 36 427-462 71-109 (133)
221 1z6u_A NP95-like ring finger p 35.3 9.6 0.00033 34.6 0.6 44 429-483 79-122 (150)
222 2epr_A POZ-, at HOOK-, and zin 33.7 15 0.0005 25.6 1.2 12 429-440 13-24 (48)
223 3vhs_A ATPase wrnip1; zinc fin 33.5 13 0.00043 24.9 0.7 10 557-566 7-16 (29)
224 2dmd_A Zinc finger protein 64, 32.3 22 0.00075 27.9 2.2 12 429-440 9-20 (96)
225 2drp_A Protein (tramtrack DNA- 32.3 20 0.00067 26.3 1.8 12 429-440 11-22 (66)
226 2ctu_A Zinc finger protein 483 32.2 7.6 0.00026 28.9 -0.6 30 428-457 18-52 (73)
227 3hct_A TNF receptor-associated 31.7 12 0.00042 32.1 0.6 44 428-482 18-61 (118)
228 1x6h_A Transcriptional repress 31.3 21 0.00071 27.4 1.9 13 428-440 15-27 (86)
229 2kmk_A Zinc finger protein GFI 31.3 21 0.00071 27.0 1.8 10 430-439 31-40 (82)
230 2k4x_A 30S ribosomal protein S 30.8 22 0.00077 27.4 1.9 27 428-454 18-46 (55)
231 3h0g_L DNA-directed RNA polyme 30.7 23 0.00079 28.3 2.0 25 428-452 21-46 (63)
232 4ayc_A E3 ubiquitin-protein li 30.6 13 0.00045 32.8 0.6 29 430-462 55-83 (138)
233 4a17_Y RPL37A, 60S ribosomal p 30.1 13 0.00044 32.5 0.5 29 428-458 36-68 (103)
234 1llm_C Chimera of ZIF23-GCN4; 29.7 22 0.00075 27.8 1.8 26 429-454 4-41 (88)
235 1a1h_A QGSR zinc finger peptid 29.6 22 0.00076 27.5 1.8 10 430-439 36-45 (90)
236 1dl6_A Transcription factor II 29.4 29 0.00098 26.9 2.3 27 428-454 11-40 (58)
237 2lt7_A Transcriptional regulat 29.1 21 0.0007 31.3 1.6 27 429-455 23-61 (133)
238 3t6p_A Baculoviral IAP repeat- 28.9 21 0.00071 37.0 1.9 39 428-482 295-334 (345)
239 3knv_A TNF receptor-associated 28.5 14 0.0005 33.1 0.5 45 428-483 31-75 (141)
240 1e4u_A Transcriptional repress 27.9 24 0.00082 28.6 1.7 49 427-483 10-59 (78)
241 1ffk_W Ribosomal protein L37AE 27.8 20 0.00069 29.4 1.2 30 428-457 27-58 (73)
242 1wim_A KIAA0161 protein; ring 27.7 19 0.00064 29.6 1.0 36 428-464 5-40 (94)
243 2yt9_A Zinc finger-containing 27.6 26 0.00089 27.4 1.9 12 429-440 8-19 (95)
244 3dpl_R Ring-box protein 1; ubi 27.5 20 0.00068 30.9 1.2 42 421-462 30-85 (106)
245 2d8v_A Zinc finger FYVE domain 27.3 28 0.00096 28.2 1.9 28 428-460 8-36 (67)
246 1tot_A CREB-binding protein; z 27.3 14 0.00049 28.1 0.2 27 429-458 7-34 (52)
247 2y1n_A E3 ubiquitin-protein li 26.8 20 0.00067 38.1 1.2 43 429-482 333-375 (389)
248 2ee8_A Protein ODD-skipped-rel 26.8 38 0.0013 27.1 2.8 13 428-440 17-29 (106)
249 2jne_A Hypothetical protein YF 26.4 32 0.0011 29.9 2.2 35 429-463 33-72 (101)
250 2lk0_A RNA-binding protein 5; 26.2 21 0.00072 24.5 0.9 21 430-452 7-27 (32)
251 1f2i_G Fusion of N-terminal 17 26.0 29 0.001 25.9 1.8 13 428-440 19-33 (73)
252 2dlq_A GLI-kruppel family memb 25.8 30 0.001 28.3 2.0 13 428-440 7-19 (124)
253 1dvp_A HRS, hepatocyte growth 25.8 75 0.0026 30.3 5.1 15 557-571 162-176 (220)
254 1d4u_A Nucleotide excision rep 25.8 32 0.0011 30.3 2.2 12 472-483 24-35 (111)
255 2kdx_A HYPA, hydrogenase/ureas 25.7 25 0.00084 30.7 1.5 25 428-452 73-98 (119)
256 2dmi_A Teashirt homolog 3; zin 25.4 31 0.0011 28.1 2.0 9 430-438 52-60 (115)
257 1rmd_A RAG1; V(D)J recombinati 25.4 18 0.00062 30.7 0.5 44 428-482 23-66 (116)
258 4ap4_A E3 ubiquitin ligase RNF 25.2 14 0.00049 31.3 -0.1 35 428-462 7-44 (133)
259 2kwq_A Protein MCM10 homolog; 25.2 21 0.00073 30.5 0.9 24 430-454 50-75 (92)
260 2csh_A Zinc finger protein 297 25.2 30 0.001 28.0 1.8 26 429-455 11-48 (110)
261 3k7a_M Transcription initiatio 25.1 32 0.0011 35.3 2.5 34 422-455 14-53 (345)
262 1wjp_A Zinc finger protein 295 25.0 29 0.00099 28.1 1.7 26 429-454 17-52 (107)
263 3c5k_A HD6, histone deacetylas 24.8 26 0.0009 30.5 1.5 26 428-457 24-49 (109)
264 2epq_A POZ-, at HOOK-, and zin 24.2 28 0.00095 23.5 1.3 12 429-440 11-22 (45)
265 4ic3_A E3 ubiquitin-protein li 24.0 18 0.0006 28.6 0.2 29 429-461 25-54 (74)
266 4ayb_P DNA-directed RNA polyme 23.9 36 0.0012 25.8 1.9 24 429-452 4-31 (48)
267 2k1p_A Zinc finger RAN-binding 23.9 37 0.0013 23.4 1.8 21 430-452 8-28 (33)
268 2gmg_A Hypothetical protein PF 23.8 25 0.00084 30.9 1.1 22 447-468 70-100 (105)
269 3zyq_A Hepatocyte growth facto 23.7 79 0.0027 30.5 4.8 30 531-571 150-179 (226)
270 2dlk_A Novel protein; ZF-C2H2 23.6 30 0.001 26.1 1.5 12 429-440 39-52 (79)
271 2wbt_A B-129; zinc finger; 2.7 23.5 26 0.0009 29.3 1.2 12 429-440 75-86 (129)
272 2fc7_A ZZZ3 protein; structure 21.9 33 0.0011 28.5 1.4 31 430-461 23-57 (82)
273 2ej4_A Zinc finger protein ZIC 21.9 58 0.002 25.4 2.9 21 420-440 16-37 (95)
274 2ghf_A ZHX1, zinc fingers and 21.4 26 0.00087 29.7 0.7 13 428-440 18-30 (102)
275 3k1f_M Transcription initiatio 21.3 38 0.0013 32.5 1.9 37 419-455 11-53 (197)
276 2kvh_A Zinc finger and BTB dom 20.1 38 0.0013 19.9 1.2 11 444-454 3-13 (27)
No 1
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=99.80 E-value=1.6e-20 Score=159.31 Aligned_cols=70 Identities=39% Similarity=0.925 Sum_probs=64.3
Q ss_pred CCCCCCccCcCCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHH
Q 008295 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (571)
Q Consensus 417 ~~~~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (571)
+.++.|++|+++..|+.|++.|++++||||||+||+|||.+|+.+++.|+..+..+++|||+.||..+..
T Consensus 10 ~~~~~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 10 QSKGYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRS 79 (84)
T ss_dssp CCCSCCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHT
T ss_pred CCCCccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhh
Confidence 3467999999999999999999999999999999999999999999999876657899999999998754
No 2
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-20 Score=157.61 Aligned_cols=69 Identities=25% Similarity=0.689 Sum_probs=62.1
Q ss_pred CCCCccCcCCccccccCccccCccccccccccCceeccCCCCCcEeccCCCC------CCceeeccccHHHHHHh
Q 008295 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADAN------AQPVRVCDRCMAEVTQR 487 (571)
Q Consensus 419 ~~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~------~~pvRVC~~Cy~~l~~r 487 (571)
...|++|+++..|+.|+++|++++||||||+||+|||..|+.+++.|+..+. .+++|||+.||+.|...
T Consensus 5 ~~~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~~ 79 (84)
T 1x4u_A 5 SSGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKS 79 (84)
T ss_dssp CCCSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHSC
T ss_pred CCccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhcc
Confidence 4789999999999999999999999999999999999999999999876543 36799999999988643
No 3
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=99.78 E-value=5.5e-20 Score=155.33 Aligned_cols=68 Identities=44% Similarity=1.023 Sum_probs=57.3
Q ss_pred CCCCccCcCCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHHhh
Q 008295 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRL 488 (571)
Q Consensus 419 ~~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~r~ 488 (571)
++.|++|+++..|+.|++.|++++||||||.||+|||..|+.+++.|+. ..+++|||+.||..|..+.
T Consensus 10 ~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~--~~~~~RVC~~C~~~l~~~~ 77 (82)
T 2yw8_A 10 GHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPS--YPKPVRVCDSCHTLLLQRC 77 (82)
T ss_dssp -----CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTT--CSSCEEECHHHHHHTTC--
T ss_pred CCccccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCC--CCCcCEECHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999999998885 3689999999999876554
No 4
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=99.76 E-value=1.7e-19 Score=149.23 Aligned_cols=68 Identities=35% Similarity=0.852 Sum_probs=59.1
Q ss_pred CCCCCccCcCCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHHhh
Q 008295 418 EKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRL 488 (571)
Q Consensus 418 ~~~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~r~ 488 (571)
..+.|+++ +.|+.|+++|++++||||||+||+|||+.|+.+++.|+..+..+++|||+.||+.+...+
T Consensus 4 ~~p~W~~~---~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~i~ 71 (73)
T 1vfy_A 4 TPADWIDS---DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYEFIV 71 (73)
T ss_dssp ---CCCCC---SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHHHHH
T ss_pred CCCcCccC---CcccCCCCccCCccccccCCCCCEEEcccccCCeEEcccCCCCCCCEECHHHHHHHHHHh
Confidence 35789997 489999999999999999999999999999999999987766689999999999876543
No 5
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=99.74 E-value=8.9e-19 Score=150.49 Aligned_cols=68 Identities=32% Similarity=0.851 Sum_probs=62.1
Q ss_pred CCCCCccCcCCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHHh
Q 008295 418 EKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQR 487 (571)
Q Consensus 418 ~~~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~r 487 (571)
..+.|++|.++..|+.|++.|++++||||||+||+|||..|+.+++.|+.. .+++|||+.||+.|...
T Consensus 10 ~~p~W~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~--~~~~RVC~~C~~~l~~~ 77 (90)
T 3t7l_A 10 KQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYL--EKEARVCVVCYETISKA 77 (90)
T ss_dssp SCCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTT--TEEEEECHHHHHHHHHH
T ss_pred CCCcCcccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCC--CCCCeECHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999998753 47999999999988644
No 6
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=99.72 E-value=1.8e-18 Score=157.02 Aligned_cols=64 Identities=44% Similarity=1.094 Sum_probs=59.4
Q ss_pred CCCCccCcCCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHH
Q 008295 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (571)
Q Consensus 419 ~~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l 484 (571)
.+.|++|.++..|+.|++.|++++||||||+||+|||..|+.+++.++. ..+++|||+.||..|
T Consensus 60 ~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~--~~~p~RVC~~C~~~l 123 (125)
T 1joc_A 60 NRKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPS--SKKPVRVCDACFNDL 123 (125)
T ss_dssp HCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTT--CSSCEEECHHHHHHT
T ss_pred CCccccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCccccCC--CCCCCEeCHHHHHHh
Confidence 4689999999999999999999999999999999999999999988875 468999999999865
No 7
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=99.68 E-value=1.8e-17 Score=141.99 Aligned_cols=62 Identities=26% Similarity=0.667 Sum_probs=56.1
Q ss_pred cCCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHHhh
Q 008295 426 EAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRL 488 (571)
Q Consensus 426 ~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~r~ 488 (571)
.++..|+.|++.|++++||||||+||+|||..|+.+++.|+..+ .+++|||+.||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g-~~~~RVC~~C~~~l~~~~ 68 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAG-NTQQKVCKQCHTILTRGS 68 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTT-SEEEEECHHHHHHHHHCC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccC-CCcCEECHHHHHHHHhcc
Confidence 45779999999999999999999999999999999999998764 579999999999887654
No 8
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=99.66 E-value=3.1e-17 Score=160.90 Aligned_cols=67 Identities=37% Similarity=0.895 Sum_probs=60.4
Q ss_pred CCCCCCccCcCCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHH
Q 008295 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (571)
Q Consensus 417 ~~~~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (571)
+..+.|+++ ..|+.|++.|++++||||||+||+|||+.|+.+++.++..+..+++|||+.||..+..
T Consensus 153 ~~~~~W~~~---~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~~~~~RvC~~C~~~l~~ 219 (220)
T 1dvp_A 153 DTAPNWADG---RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR 219 (220)
T ss_dssp SCCCCCCCC---SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred cccccCCCC---CccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCCCCCCCEeCHHHHHHHhc
Confidence 346899986 5999999999999999999999999999999999999876667899999999998753
No 9
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.63 E-value=5.3e-17 Score=160.34 Aligned_cols=67 Identities=36% Similarity=0.895 Sum_probs=60.4
Q ss_pred CCCCCCccCcCCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHH
Q 008295 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (571)
Q Consensus 417 ~~~~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (571)
+..+.|+++ ..|+.|++.|++++||||||+||+|||..|+.+++.++..+..+++|||+.||+.+..
T Consensus 156 ~~~p~W~~~---~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~ 222 (226)
T 3zyq_A 156 ERAPDWVDA---EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNR 222 (226)
T ss_dssp CCCCCCCCC---SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC
T ss_pred ccccccccC---CCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhh
Confidence 457899986 4899999999999999999999999999999999999876667899999999998753
No 10
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=99.63 E-value=1.4e-16 Score=143.66 Aligned_cols=62 Identities=24% Similarity=0.510 Sum_probs=43.7
Q ss_pred CCCCCCccCcCCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHH
Q 008295 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (571)
Q Consensus 417 ~~~~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (571)
..+..|.||.++..|+.|++.|++++||||||+||+|||+.|+.+++. .+|||+.||..+..
T Consensus 8 ~~~~~~~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~--------~vRVC~~C~~~~~~ 69 (120)
T 1y02_A 8 GYSSFPSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN--------GPRLCLLCQRFRAT 69 (120)
T ss_dssp ------------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC------------CCEEHHHHHHHHT
T ss_pred CcccCCcCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC--------CceECHHHHHHHhc
Confidence 346789999999999999999999999999999999999999998874 38999999997653
No 11
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=1.2e-15 Score=161.08 Aligned_cols=68 Identities=35% Similarity=0.824 Sum_probs=0.0
Q ss_pred CCCCCccCcCCccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHHH
Q 008295 418 EKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (571)
Q Consensus 418 ~~~~WvpD~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (571)
..+.|++|.++..|+.|++.|+++.||||||.||+|||..||.+++.++.. ..+++|||+.||..+.+
T Consensus 365 ~~p~w~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~-~~~~~rvC~~C~~~l~~ 432 (434)
T 3mpx_A 365 RPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYL-KDRMAKVCDGCFGELKK 432 (434)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCCcCCCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCC-CCCcCEecHHHHHHHHh
Confidence 467899999999999999999999999999999999999999999988743 45899999999998754
No 12
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.29 E-value=1.5e-13 Score=113.17 Aligned_cols=78 Identities=14% Similarity=0.174 Sum_probs=71.2
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
+|.|+||+|+..+. .++|+.||+.|+++|.+|..|+||||+|+..|+.++++.|++.|++
T Consensus 1 ~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 60 (93)
T 1n0q_A 1 NGRTPLHLAARNGH--------------------LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60 (93)
T ss_dssp --CCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCcHHHHHHHcCC--------------------HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 36789999887665 8999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCceeeeeccc
Q 008295 309 GIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 309 g~~~lD~~gnn~LhiApLe 327 (571)
++..|.+|.|+||+|...
T Consensus 61 -~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 61 -VNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp -TTCCCTTSCCHHHHHHHT
T ss_pred -CCccCCCCCCHHHHHHHc
Confidence 999999999999998554
No 13
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.28 E-value=2e-13 Score=127.02 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=51.7
Q ss_pred chhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 262 SSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 262 ~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
+.+||+.||++||++|.+|..|+||||+|++.|+.++|++|++.|+| ++..|.+|.|+||+|...
T Consensus 82 ~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~ 146 (169)
T 4gpm_A 82 HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREH 146 (169)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHc
Confidence 47788888888888888888888888888888888888888888888 777888888888887544
No 14
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.19 E-value=9.4e-13 Score=113.32 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=49.7
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008295 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiA 324 (571)
.+||+.||+.|+++|.+|..|+||||+|++.|+.+++++|++.|++ +++.|.+|.|+||+|
T Consensus 53 ~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 53 LEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEAT 113 (123)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHC
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHh
Confidence 7788888888888888888888888888888888888888888888 777888888888877
No 15
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.16 E-value=3e-12 Score=126.71 Aligned_cols=64 Identities=8% Similarity=0.102 Sum_probs=40.2
Q ss_pred CCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008295 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (571)
Q Consensus 260 ~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiA 324 (571)
.|+.+||+.||++||++|.+|..|+||||+|++.|+.++|++|++.|+| +++.|.+|.|+||+|
T Consensus 162 ~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A 225 (269)
T 4b93_B 162 GGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCA 225 (269)
T ss_dssp TTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGS
T ss_pred CCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHH
Confidence 3446666666666666666666666666666666666666666666666 666666666666665
No 16
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.13 E-value=4.2e-12 Score=113.85 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=58.6
Q ss_pred CchhHhhhcccCCcccccccccccc-eEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 261 GSSKIVRAVPKVDTHQDVKSGVQKF-RVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kT-pLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
|+.+||+.||++|+++|.+|..|+| +||+|++.|+.+++++|++.|++ ++..|..|.|+||+|...
T Consensus 55 ~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~ 121 (156)
T 1bi7_B 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEEL 121 (156)
T ss_dssp TCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHh
Confidence 4588999999999999999999998 99999999999999999999999 888999999999998554
No 17
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.12 E-value=4.1e-12 Score=111.08 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=45.8
Q ss_pred chhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 262 SSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 262 ~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
+.++|+.|+++|+++|.+|..|+||||+|++.|+.+++++|++.|++ +++.|..|.|+||+|..+
T Consensus 55 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~ 119 (137)
T 3c5r_A 55 HLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDE 119 (137)
T ss_dssp CHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCH
T ss_pred CHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhc
Confidence 36777777777777777777777777777777777777777777777 667777777777776443
No 18
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.12 E-value=3.3e-12 Score=108.38 Aligned_cols=79 Identities=10% Similarity=0.099 Sum_probs=72.5
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
.|.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|+..|+.++++.|++.|++
T Consensus 8 ~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 67 (115)
T 2l6b_A 8 DGNTPLHNAAKNGH--------------------AEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67 (115)
T ss_dssp SSCCHHHHHHHHTC--------------------HHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 56788999876654 9999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCceeeeecccc
Q 008295 309 GIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 309 g~~~lD~~gnn~LhiApLe~ 328 (571)
++..|..|.++||+|....
T Consensus 68 -~~~~d~~g~tpl~~A~~~~ 86 (115)
T 2l6b_A 68 -VNARSKDGNTPEHLAKKNG 86 (115)
T ss_dssp -TTCCCTTCCCTTHHHHTTT
T ss_pred -CcccCCCCCCHHHHHHHCC
Confidence 9999999999999986653
No 19
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.12 E-value=6.2e-12 Score=110.26 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=34.2
Q ss_pred hhHhhhcccCCccccccccc-ccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008295 263 SKIVRAVPKVDTHQDVKSGV-QKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~-~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiA 324 (571)
.+||+.||++|+++|.+|.. |+||||+|++.|+.+++++|++.|++ +++.|..|.|+||+|
T Consensus 57 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A 118 (136)
T 1d9s_A 57 AQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLA 118 (136)
T ss_dssp HHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHH
Confidence 55555555555555555555 55555555555555555555555555 555555555555554
No 20
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.10 E-value=2.4e-12 Score=109.79 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=72.1
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008295 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (571)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~G 306 (571)
-..|.++||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|+..|+.+++++|+++|
T Consensus 21 ~~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g 80 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQ--------------------DDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80 (110)
T ss_dssp -CCHHHHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCccchHHHHHHHcCC--------------------HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 3456678899877665 99999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeeeeccc
Q 008295 307 LDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 307 adg~~~lD~~gnn~LhiApLe 327 (571)
++ ++..|..|.|+||+|...
T Consensus 81 a~-~~~~d~~g~tpl~~A~~~ 100 (110)
T 2zgd_A 81 AD-VXAQDKFGKTAFDISIDN 100 (110)
T ss_dssp CC-TTCCCTTSCCHHHHHHHH
T ss_pred CC-ccccccCCCcHHHHHHHc
Confidence 99 999999999999998544
No 21
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.08 E-value=5.9e-12 Score=110.40 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=53.0
Q ss_pred ccCcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHH
Q 008295 224 YGARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLC 303 (571)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLl 303 (571)
+...-.+.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|+..|+.++++.|+
T Consensus 8 ~~~~~~~~t~l~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 67 (136)
T 2jab_A 8 HHHGSDLGKKLLEAARAGQ--------------------DDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL 67 (136)
T ss_dssp ----CHHHHHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CcccccccHHHHHHHHhCC--------------------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3344455666777665543 66677777777777766666777777777766666677777
Q ss_pred HcCCCCCcccCCCCCceeeeeccc
Q 008295 304 QIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 304 q~Gadg~~~lD~~gnn~LhiApLe 327 (571)
+.|++ ++..|..|.|+||+|...
T Consensus 68 ~~g~~-~~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 68 KNGAD-VNAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp HTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred HcCCC-CCcCCCCCCCHHHHHHHc
Confidence 77766 666666677777666554
No 22
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.08 E-value=7.5e-12 Score=116.33 Aligned_cols=80 Identities=13% Similarity=0.141 Sum_probs=70.6
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .++|+.||++||++|.+|..|+||||+|++.|+.+++++|++.|+
T Consensus 35 ~~g~t~l~~a~~~~~--------------------~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 94 (169)
T 4gpm_A 35 SDGRTPLHHAAENGH--------------------KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 94 (169)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcC
Confidence 456788888776665 899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe~ 328 (571)
| ++..|.+|+|+||+|....
T Consensus 95 d-vn~~d~~G~TpLh~A~~~g 114 (169)
T 4gpm_A 95 D-VNAKDSDGRTPLHHAAENG 114 (169)
T ss_dssp C-TTCCCTTSCCHHHHHHHTT
T ss_pred C-CCCCCCCCCCHHHHHHHcC
Confidence 9 9999999999999986653
No 23
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.07 E-value=6.9e-12 Score=125.06 Aligned_cols=82 Identities=11% Similarity=0.035 Sum_probs=74.3
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .|+.+||+.||++||++|.+|..|+||||+|+..|+.++|++|++.|+
T Consensus 167 ~~g~t~Lh~A~~~~~-----------------~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 229 (278)
T 1dcq_A 167 EPDETALHLAVRSVD-----------------RTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229 (278)
T ss_dssp STTCBHHHHHHHHCC-----------------TTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cCCCCcchHHHHhcc-----------------cchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 357899999998632 245999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
| +++.|.+|.|+||+|...
T Consensus 230 d-~~~~d~~g~tpL~~A~~~ 248 (278)
T 1dcq_A 230 S-IEIANESGETPLDIAKRL 248 (278)
T ss_dssp C-TTCCCTTSCCHHHHHHHT
T ss_pred C-CCCccCCCCCHHHHHHHc
Confidence 9 999999999999998544
No 24
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.06 E-value=4.6e-12 Score=110.70 Aligned_cols=80 Identities=9% Similarity=-0.039 Sum_probs=73.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|++.|+.++++.|++.|+
T Consensus 8 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 67 (137)
T 3c5r_A 8 HRGETLLHIASIKGD--------------------IPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67 (137)
T ss_dssp TTCCCHHHHHHHHTC--------------------HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 567899999887664 999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe~ 328 (571)
+ ++..|..|.|+||+|....
T Consensus 68 ~-~~~~~~~g~t~L~~A~~~~ 87 (137)
T 3c5r_A 68 L-VNTTGYQNDSPLHDAAKNG 87 (137)
T ss_dssp C-TTCCCGGGCCHHHHHHHTT
T ss_pred c-ccCcCCCCCCHHHHHHHcC
Confidence 9 9999999999999996553
No 25
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.06 E-value=1.5e-11 Score=107.85 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=72.7
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008295 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (571)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~G 306 (571)
...|.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|+. |+.++++.|++.|
T Consensus 9 ~~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g 67 (136)
T 1d9s_A 9 GGSSDAGLATAAARGQ--------------------VETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHG 67 (136)
T ss_dssp CCCCSCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHcCC--------------------HHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCC
Confidence 4567889999877654 999999999999999999999999999999 9999999999999
Q ss_pred CCCCcccCCC-CCceeeeecccc
Q 008295 307 LDGIRMLDPN-TSRTLRIYPLEN 328 (571)
Q Consensus 307 adg~~~lD~~-gnn~LhiApLe~ 328 (571)
++ ++..|.. |.|+||+|....
T Consensus 68 ~~-~~~~~~~~g~t~L~~A~~~~ 89 (136)
T 1d9s_A 68 AE-PNCADPATLTRPVHDAAREG 89 (136)
T ss_dssp CC-SSCCBTTTTBCHHHHHHHHT
T ss_pred CC-CCCcCCCCCCCHHHHHHHcC
Confidence 99 9999999 999999996553
No 26
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.04 E-value=1.5e-11 Score=110.19 Aligned_cols=79 Identities=10% Similarity=0.012 Sum_probs=48.6
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
+.|.|+||+|+..+. .++|+.|+..|+++|.+|..|+|+||+|++.|+.++++.|++.|+
T Consensus 40 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 99 (165)
T 3twr_A 40 GRQSTPLHFAAGYNR--------------------VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 99 (165)
T ss_dssp TTCCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHcCh--------------------HHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCC
Confidence 345677777665443 566666666666666666666666666666666666666666666
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
+ ++..|..|.|+||+|...
T Consensus 100 ~-~~~~~~~g~t~L~~A~~~ 118 (165)
T 3twr_A 100 V-VNVADLWKFTPLHEAAAK 118 (165)
T ss_dssp C-TTCCCTTCCCHHHHHHHT
T ss_pred C-CCCcCCCCCCHHHHHHHc
Confidence 6 556666666666665544
No 27
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.04 E-value=1.3e-11 Score=113.72 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=37.2
Q ss_pred hhHhhhcccCCccccccc-ccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008295 263 SKIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd-~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiA 324 (571)
.++|+.||++||++|.+| ..|+||||+|++.|+.+++++|+++|++ +++.|.+|.|+||+|
T Consensus 89 ~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A 150 (183)
T 3deo_A 89 DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELA 150 (183)
T ss_dssp HHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHH
Confidence 556666666666666555 5566666666666666666666666666 555666666666655
No 28
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.03 E-value=1.5e-11 Score=115.90 Aligned_cols=78 Identities=5% Similarity=0.033 Sum_probs=42.1
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHc-CC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI-GL 307 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~-Ga 307 (571)
.|.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|+..|+.+++++|++. |+
T Consensus 72 ~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~ 131 (222)
T 3ehr_A 72 SIDNPLHEAAKRGN--------------------LSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI 131 (222)
T ss_dssp EESCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTC
T ss_pred ccccccccccccCc--------------------HHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCC
Confidence 45677888776543 4555555555555555555555555555555555555555554 55
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
+ +++.|..|.|+||+|...
T Consensus 132 ~-~~~~d~~g~tpL~~A~~~ 150 (222)
T 3ehr_A 132 E-LNQQNKLGDTALHAAAWK 150 (222)
T ss_dssp C-CCCCCTTSCCHHHHHHHH
T ss_pred C-ccccCCCCCCHHHHHHHc
Confidence 5 445555555555554433
No 29
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.03 E-value=5.4e-12 Score=110.61 Aligned_cols=79 Identities=15% Similarity=0.036 Sum_probs=72.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .+||+.||++|+++|.+|..|+|+||+|++.|+.++++.|++.|+
T Consensus 45 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 104 (136)
T 2jab_A 45 EYGLTPLYLATAHGH--------------------LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104 (136)
T ss_dssp TTSCCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 457788888876654 899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
+ ++..|.+|.|+||+|...
T Consensus 105 ~-~~~~~~~g~tpl~~A~~~ 123 (136)
T 2jab_A 105 D-VNAQDKFGKTAFDISIGN 123 (136)
T ss_dssp C-TTCCCTTSCCHHHHHHHT
T ss_pred C-CcCcCCCCCCHHHHHHHC
Confidence 9 999999999999998544
No 30
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.03 E-value=9.4e-12 Score=107.03 Aligned_cols=77 Identities=16% Similarity=0.049 Sum_probs=70.5
Q ss_pred CCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCC
Q 008295 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDG 309 (571)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg 309 (571)
+.++||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|++.|+.++++.|++.|++
T Consensus 7 ~~~~l~~A~~~~~--------------------~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~- 65 (123)
T 3aaa_C 7 CDKEFMWALKNGD--------------------LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD- 65 (123)
T ss_dssp CHHHHHHHHHTTC--------------------HHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-
T ss_pred cchHHHHHHHcCC--------------------HHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-
Confidence 4577888776654 9999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCceeeeeccc
Q 008295 310 IRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 310 ~~~lD~~gnn~LhiApLe 327 (571)
++..|..|.|+||+|...
T Consensus 66 ~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 66 INAPDKHHITPLLSAVYE 83 (123)
T ss_dssp TTCCCTTSCCHHHHHHHH
T ss_pred CCcCCCCCCCHHHHHHHc
Confidence 999999999999998654
No 31
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.02 E-value=2.8e-11 Score=117.94 Aligned_cols=77 Identities=8% Similarity=0.077 Sum_probs=72.3
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..++ .+||+.||++||++|.+|..|+||||+|++.|+.+++++|+++|+
T Consensus 197 ~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 256 (299)
T 1s70_B 197 KSGGTALHVAAAKGY--------------------TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256 (299)
T ss_dssp TTCCCHHHHHHHHTC--------------------HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHCCc--------------------HHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Confidence 457899999887765 899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeec
Q 008295 308 DGIRMLDPNTSRTLRIYP 325 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiAp 325 (571)
| +++.|..|.|+||+|.
T Consensus 257 d-~~~~d~~g~t~l~~A~ 273 (299)
T 1s70_B 257 D-MEAVNKVGQTAFDVAD 273 (299)
T ss_dssp C-TTCCCTTSCCTTTSCC
T ss_pred C-CCCcCCCCCCHHHHHH
Confidence 9 9999999999999983
No 32
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.01 E-value=2.3e-11 Score=108.26 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=35.6
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
.++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 47 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 110 (153)
T 1awc_B 47 FSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEH 110 (153)
T ss_dssp HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHc
Confidence 5555555555555555555555555555555555555555555555 555555555555555443
No 33
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.01 E-value=2e-11 Score=114.94 Aligned_cols=81 Identities=12% Similarity=0.037 Sum_probs=70.1
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCc------hHHHHH
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQ------STMDVL 302 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~------~iv~vL 302 (571)
.|.|+||+|+..+. ..+..+||+.||.+||++|.+|..|+||||+|+..|+. +++++|
T Consensus 37 ~g~T~Lh~A~~~~~----------------~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~L 100 (186)
T 3t8k_A 37 LKSNILYDVLRNNN----------------DEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIF 100 (186)
T ss_dssp HTTTHHHHHTTCSC----------------HHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCC----------------cchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHH
Confidence 47899999887653 01125699999999999999999999999999999874 579999
Q ss_pred HHcCCCCCcccCCCCC-ceeeeecc
Q 008295 303 CQIGLDGIRMLDPNTS-RTLRIYPL 326 (571)
Q Consensus 303 lq~Gadg~~~lD~~gn-n~LhiApL 326 (571)
++.|+| +++.|..|. ++||+|..
T Consensus 101 l~~Gad-in~~d~~g~ttpLh~A~~ 124 (186)
T 3t8k_A 101 LEKGAD-ITALYKPYKIVVFKNIFN 124 (186)
T ss_dssp HHTTCC-SSSCBGGGTBCTTGGGGG
T ss_pred HHCCCC-CCccCCCcCchHHHHHHH
Confidence 999999 999999999 99999865
No 34
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.00 E-value=1.5e-11 Score=117.92 Aligned_cols=81 Identities=12% Similarity=0.090 Sum_probs=72.3
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccccccc-ccceEEEEeccCCchHHHHHHHc
Q 008295 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGV-QKFRVKLLAESGGQSTMDVLCQI 305 (571)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~-~kTpLHlaa~~g~~~iv~vLlq~ 305 (571)
-..|.|+||+|+..+. .+||+.||++|+++|.++.. |+||||+|++.|+.+++++|++.
T Consensus 155 ~~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 214 (282)
T 1oy3_D 155 NYDGHTPLHVAVIHKD--------------------AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214 (282)
T ss_dssp CTTSCCHHHHHHHTTC--------------------HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 3467788999876554 99999999999999999865 99999999999999999999999
Q ss_pred CCCCCcccCCCCCceeeeecccc
Q 008295 306 GLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 306 Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
|++ +++.|..|.|+||+|....
T Consensus 215 gad-~~~~d~~g~tpL~~A~~~~ 236 (282)
T 1oy3_D 215 GAD-PTARMYGGRTPLGSALLRP 236 (282)
T ss_dssp TCC-TTCCCTTSCCHHHHHHTSS
T ss_pred CCC-CcccccCCCCHHHHHHHcC
Confidence 999 9999999999999996553
No 35
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.00 E-value=3.5e-11 Score=109.70 Aligned_cols=79 Identities=14% Similarity=0.056 Sum_probs=65.5
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|+..|+.++++.|++.|+
T Consensus 37 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 96 (179)
T 3f6q_A 37 DHGFSPLHWACREGR--------------------SAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96 (179)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCc--------------------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 356788999776554 788888888888888888888888888888888888888888888
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
+ ++..|..|.|+||+|...
T Consensus 97 ~-~~~~d~~g~t~L~~A~~~ 115 (179)
T 3f6q_A 97 D-INAVNEHGNVPLHYACFW 115 (179)
T ss_dssp C-TTCCCTTSCCHHHHHHHT
T ss_pred C-CCccCCCCCCHHHHHHHc
Confidence 8 888888888888888765
No 36
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.00 E-value=2.8e-11 Score=129.72 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=74.7
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008295 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (571)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~G 306 (571)
-..|.|+||+|+.- +..|+.+||++||.+||++|.+|..|+||||+|+..|+.++|++|++.|
T Consensus 168 ~~~g~t~Lh~A~~~-----------------a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 230 (497)
T 3lvq_E 168 QAPEELVLHLAVKV-----------------ANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 230 (497)
T ss_dssp CCSCBCHHHHHHHT-----------------CCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTC
T ss_pred ccccchHHHHHHHh-----------------cccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 34688999998541 1245699999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeeeecccc
Q 008295 307 LDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 307 adg~~~lD~~gnn~LhiApLe~ 328 (571)
+| +++.|.+|.|+||+|....
T Consensus 231 a~-~~~~d~~g~tpl~~A~~~~ 251 (497)
T 3lvq_E 231 AL-VGTVNEAGETALDIARKKH 251 (497)
T ss_dssp CC-CSCCCTTCCCHHHHHHHTT
T ss_pred CC-CCCcCCCCCCHHHHHHHcC
Confidence 99 9999999999999997653
No 37
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=98.99 E-value=4.4e-11 Score=114.70 Aligned_cols=77 Identities=4% Similarity=-0.135 Sum_probs=60.8
Q ss_pred CCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCC
Q 008295 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDG 309 (571)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg 309 (571)
|.|+||+|+..+. .+||+.||++||++|.+|..|+||||+|++.|+.+++++|+++|++
T Consensus 192 g~tpL~~A~~~~~--------------------~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~- 250 (282)
T 1oy3_D 192 GRTPLHLAVEAQA--------------------ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP- 250 (282)
T ss_dssp CCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC-
T ss_pred CcCHHHHHHHcCC--------------------HHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCC-
Confidence 8899999886554 8999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCceeeeeccc
Q 008295 310 IRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 310 ~~~lD~~gnn~LhiApLe 327 (571)
++..|.+|.|+|+++.-.
T Consensus 251 ~~~~~~~g~tpl~~a~~~ 268 (282)
T 1oy3_D 251 EPEDGGDKLSPCSSSGSD 268 (282)
T ss_dssp CCCCC-------------
T ss_pred cCcCCCcccccccccCCc
Confidence 999999999999997444
No 38
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=98.98 E-value=3.1e-11 Score=117.01 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=35.4
Q ss_pred hhHhhhcccCCccccccc-ccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008295 263 SKIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd-~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiA 324 (571)
.+||+.||++||++|.+| ..|+||||+|++.|+.+++++|+++|++ +++.|..|.|+||+|
T Consensus 90 ~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A 151 (244)
T 3ui2_A 90 DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELA 151 (244)
T ss_dssp HHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHH
Confidence 555555555555555555 4555555555555555555555555555 555555555555555
No 39
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=98.98 E-value=3e-11 Score=119.16 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=57.0
Q ss_pred CCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHH-cCCCCCcccCCCCCceeeeeccc
Q 008295 259 GSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQ-IGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 259 ~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq-~Gadg~~~lD~~gnn~LhiApLe 327 (571)
..|+.+||+.||++||++|.+|..|+||||+|++.|+.+++++|++ .|+| +++.|.+|.|+||+|...
T Consensus 192 ~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~TpL~~A~~~ 260 (276)
T 4hbd_A 192 SHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD-ISLTDRDGSTALMVALDA 260 (276)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CcCcCCCCCCHHHHHHHc
Confidence 3455888888888888888888888888888888888888888888 7888 888888888888887444
No 40
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=98.98 E-value=3e-11 Score=115.85 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=71.2
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccccc--------------ccccceEEEEeccC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKS--------------GVQKFRVKLLAESG 294 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd--------------~~~kTpLHlaa~~g 294 (571)
.|.|+||+|+..+. .+||+.||++||++|.+| ..|+||||+|++.|
T Consensus 92 ~g~t~L~~A~~~g~--------------------~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g 151 (260)
T 3jxi_A 92 RGQTALHIAIERRC--------------------KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151 (260)
T ss_dssp ESBCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTT
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcC
Confidence 67899999887654 999999999999999999 68999999999999
Q ss_pred CchHHHHHHH---cCCCCCcccCCCCCceeeeecc
Q 008295 295 GQSTMDVLCQ---IGLDGIRMLDPNTSRTLRIYPL 326 (571)
Q Consensus 295 ~~~iv~vLlq---~Gadg~~~lD~~gnn~LhiApL 326 (571)
+.+++++|++ .|++ ++..|..|+|+||+|..
T Consensus 152 ~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~ 185 (260)
T 3jxi_A 152 QPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVA 185 (260)
T ss_dssp CHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHH
Confidence 9999999999 9999 99999999999999863
No 41
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=98.98 E-value=5.2e-11 Score=111.21 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=41.2
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC-C
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG-L 307 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~G-a 307 (571)
.|.|+||+|+..+. .++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.| +
T Consensus 106 ~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 165 (228)
T 2dzn_A 106 QGVTCLHLAVGKKW--------------------FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165 (228)
T ss_dssp TCCCHHHHHHHTTC--------------------HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHcCC--------------------HhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 46677777765443 44555555555555555555555555555555555555555555 4
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
+ ++..|..|+|+||+|...
T Consensus 166 ~-~~~~d~~g~t~L~~A~~~ 184 (228)
T 2dzn_A 166 A-VNWQDKQGWTPLFHALAE 184 (228)
T ss_dssp C-SCCCCTTSCCHHHHHHHT
T ss_pred c-ccCcCCCCCCHHHHHHHc
Confidence 4 444555555555554433
No 42
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=98.98 E-value=3.7e-11 Score=109.56 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=59.9
Q ss_pred chhHhhhcccC-CcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008295 262 SSKIVRAVPKV-DTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 262 ~~~iVr~Ll~a-gA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
+.++|+.||+. ++++|.+|..|+|+||+|++.|+.++++.|++.|++ ++..|..|.|+||+|....
T Consensus 17 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 17 NAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp CHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred CHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcC
Confidence 48999999987 778999999999999999999999999999999999 8899999999999998763
No 43
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=98.97 E-value=5.4e-11 Score=106.61 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=31.9
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008295 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiA 324 (571)
.+||+.|+++|+++|.+|..|+||||+|++.|+.++++.|++.|++ ++..|.+|.|+||+|
T Consensus 88 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a 148 (165)
T 3twr_A 88 YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLV 148 (165)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGS
T ss_pred HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhH
Confidence 4555555555555555555555555555555555555555555555 445555555555553
No 44
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=98.97 E-value=3.5e-11 Score=106.99 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=46.4
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
.+||+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 50 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 113 (162)
T 1ihb_A 50 PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKE 113 (162)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence 6777777777777777777777777777777777777777777777 667777777777776655
No 45
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=98.97 E-value=2.2e-11 Score=114.63 Aligned_cols=86 Identities=8% Similarity=-0.057 Sum_probs=71.7
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccccccccc-ceEEEEeccCCc-----hHHH
Q 008295 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQK-FRVKLLAESGGQ-----STMD 300 (571)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~k-TpLHlaa~~g~~-----~iv~ 300 (571)
-..|.|+||+|++.+. ....+..+||++||++||++|.+|..|+ ||||+|+..+.. ++++
T Consensus 72 d~~g~TpLh~a~~~~~--------------~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~ 137 (186)
T 3t8k_A 72 TKEGTTLFFPLFQGGG--------------NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK 137 (186)
T ss_dssp CTTCCCTHHHHHHHCT--------------TCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHH
T ss_pred CCCCCcHHHHHHHcCC--------------cchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHH
Confidence 3568899999988653 0111246899999999999999999999 999999995543 5899
Q ss_pred HHHH-cCCCCCcccCCCCCceeeeeccc
Q 008295 301 VLCQ-IGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 301 vLlq-~Gadg~~~lD~~gnn~LhiApLe 327 (571)
+|++ .|+| +++.|..|.|+||+|...
T Consensus 138 ~Ll~~~gad-~~~~d~~G~TpL~~A~~~ 164 (186)
T 3t8k_A 138 LIFSQSGLQ-LLIKDKWGLTALEFVKRC 164 (186)
T ss_dssp HHHTSTTCC-TTCCCTTSCCHHHHHHTT
T ss_pred HHHHhcCCC-CcccCCCCCCHHHHHHHc
Confidence 9999 9999 999999999999998544
No 46
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=98.96 E-value=4.9e-11 Score=107.63 Aligned_cols=79 Identities=13% Similarity=0.002 Sum_probs=61.3
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .++|+.||+.|+++|.+|..++|+||+|++.|+.++++.|++.|+
T Consensus 34 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 93 (172)
T 3v30_A 34 ERGFTPLIWASAFGE--------------------IETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV 93 (172)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 456788888776543 778888888888888888788888888888887788888888888
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
+ ++..|..|.|+||+|...
T Consensus 94 ~-~~~~~~~g~t~L~~A~~~ 112 (172)
T 3v30_A 94 D-INIYDWNGGTPLLYAVRG 112 (172)
T ss_dssp C-TTCCCTTSCCHHHHHHHT
T ss_pred C-CCCCCCCCCCHHHHHHHc
Confidence 7 777777888888877665
No 47
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=98.96 E-value=3.9e-11 Score=115.28 Aligned_cols=78 Identities=9% Similarity=0.024 Sum_probs=65.5
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
.+.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|++.|+.++++.|++.|++
T Consensus 36 ~~~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 95 (239)
T 1ycs_B 36 LPLALLLDSSLEGE--------------------FDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 95 (239)
T ss_dssp -CHHHHHHHHHHTC--------------------HHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred hhhHHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 34677888776654 8888888888888888888889999999988888888989998888
Q ss_pred CCcccCCCCCceeeeeccc
Q 008295 309 GIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 309 g~~~lD~~gnn~LhiApLe 327 (571)
++..|.+|.|+||+|...
T Consensus 96 -~~~~d~~g~tpL~~A~~~ 113 (239)
T 1ycs_B 96 -VNAADSDGWTPLHCAASC 113 (239)
T ss_dssp -TTCCCTTCCCHHHHHHHT
T ss_pred -CCccCCCCCCHHHHHHHc
Confidence 888888888999888766
No 48
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=98.96 E-value=6e-11 Score=112.39 Aligned_cols=70 Identities=10% Similarity=0.082 Sum_probs=58.9
Q ss_pred ccCCCchhHhhhcccCCcccccccc-cccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 257 SVGSGSSKIVRAVPKVDTHQDVKSG-VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~-~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
++..|+.+||+.||++||++|.++. .|+||||+|++.|+.+++++|++.|++ +++.|..|.|+||+|...
T Consensus 124 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~ 194 (236)
T 1ikn_D 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGR 194 (236)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTS
T ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHcc
Confidence 3455678889999999999988887 888999999988888889999999988 888888888888887544
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=98.96 E-value=4.7e-11 Score=114.46 Aligned_cols=77 Identities=8% Similarity=0.025 Sum_probs=71.6
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccccccc-------------ccceEEEEeccCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGV-------------QKFRVKLLAESGG 295 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~-------------~kTpLHlaa~~g~ 295 (571)
.|.|+||+|+..+. .+||+.||++||++|.+|.. |+||||+|++.|+
T Consensus 89 ~g~t~L~~A~~~g~--------------------~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~ 148 (256)
T 2etb_A 89 QGHSALHIAIEKRS--------------------LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148 (256)
T ss_dssp TTCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC
T ss_pred cCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCC
Confidence 57899999887654 99999999999999999986 9999999999999
Q ss_pred chHHHHHHH---cCCCCCcccCCCCCceeeeecc
Q 008295 296 QSTMDVLCQ---IGLDGIRMLDPNTSRTLRIYPL 326 (571)
Q Consensus 296 ~~iv~vLlq---~Gadg~~~lD~~gnn~LhiApL 326 (571)
.++++.|++ .|++ ++..|.+|.|+||+|..
T Consensus 149 ~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~ 181 (256)
T 2etb_A 149 WDVVTYLLENPHQPAS-LEATDSLGNTVLHALVM 181 (256)
T ss_dssp HHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHhccccCCC-cCccCCCCCCHHHHHHH
Confidence 999999999 9999 99999999999999865
No 50
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=98.95 E-value=4.7e-11 Score=106.21 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=51.5
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecc
Q 008295 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPL 326 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApL 326 (571)
++..|+.+||+.|+++|+++|.+|..|+||||+|++.|+.++++.|+++|++ ++..|..|.|+||+|..
T Consensus 74 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~ 142 (153)
T 1awc_B 74 AASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISID 142 (153)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred HHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHH
Confidence 4455677777777777777777777777777777777777777777777777 77777777777777643
No 51
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=98.94 E-value=6.8e-11 Score=111.06 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=33.8
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008295 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (571)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiA 324 (571)
|+.++|+.||++|+++|.+|..|+|+||+|++.|+.++++.|++.|+| +++.|..|.|+||+|
T Consensus 161 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A 223 (241)
T 1k1a_A 161 NSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVA 223 (241)
T ss_dssp TCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTC
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCcCCCCCCHHHHH
Confidence 345555555555555555555555555555555555555555555555 555555555555554
No 52
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=98.94 E-value=6.1e-11 Score=105.46 Aligned_cols=64 Identities=8% Similarity=0.100 Sum_probs=53.3
Q ss_pred chhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 262 SSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 262 ~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
+.++|+.||+.|+++|.+|..|+|+||+|+. |+.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 17 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 17 DLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARA 80 (162)
T ss_dssp CHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred CHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHc
Confidence 3888888888888888888888888888888 888888888888888 778888888888888765
No 53
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=98.94 E-value=5.1e-11 Score=109.63 Aligned_cols=79 Identities=9% Similarity=-0.076 Sum_probs=63.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .+||+.|++.|+++|.+|..|+|+||+|+..|+.++++.|++.|+
T Consensus 66 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 125 (192)
T 2rfm_A 66 IEGSTALIWAVKNNR--------------------LGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125 (192)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ccCccHHHHHHHcCC--------------------HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence 356788999876554 788888888888888888888888888888888888888888888
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
+ ++..|..|.|+||+|...
T Consensus 126 ~-~~~~~~~g~t~L~~A~~~ 144 (192)
T 2rfm_A 126 N-VNDRNLEGETPLIVASKY 144 (192)
T ss_dssp C-SSCCCTTCCCHHHHHHHH
T ss_pred C-CCCCCCCCCCHHHHHHHc
Confidence 8 778888888888887665
No 54
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=98.94 E-value=6e-11 Score=115.06 Aligned_cols=77 Identities=12% Similarity=0.055 Sum_probs=71.6
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccc--------------cccceEEEEeccC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSG--------------VQKFRVKLLAESG 294 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~--------------~~kTpLHlaa~~g 294 (571)
.|.|+||+|+..+. .+||+.||++||++|.++. .|+||||+|++.|
T Consensus 100 ~g~tpL~~A~~~g~--------------------~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g 159 (273)
T 2pnn_A 100 KGQTALHIAIERRN--------------------MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159 (273)
T ss_dssp TTCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTT
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcC
Confidence 68899999887654 9999999999999999997 7999999999999
Q ss_pred CchHHHHHHH---cCCCCCcccCCCCCceeeeecc
Q 008295 295 GQSTMDVLCQ---IGLDGIRMLDPNTSRTLRIYPL 326 (571)
Q Consensus 295 ~~~iv~vLlq---~Gadg~~~lD~~gnn~LhiApL 326 (571)
+.+++++|++ .|++ +++.|.+|.|+||+|..
T Consensus 160 ~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~ 193 (273)
T 2pnn_A 160 QLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVE 193 (273)
T ss_dssp CHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHH
Confidence 9999999999 9999 99999999999999865
No 55
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=98.94 E-value=5.2e-11 Score=107.45 Aligned_cols=78 Identities=10% Similarity=0.015 Sum_probs=68.7
Q ss_pred CCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcc-cccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTH-QDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~-vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
+.++||+|+..+. .++|+.||+.|++ +|.+|..|+|+||+|++.|+.++++.|++.|++
T Consensus 2 ~~~~L~~A~~~g~--------------------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 61 (172)
T 3v30_A 2 DSLSIHQLAAQGE--------------------LDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61 (172)
T ss_dssp --CCHHHHHHTTC--------------------HHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred chhhHHHHHHcCC--------------------HHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3577888776554 8999999999987 899999999999999999999999999999999
Q ss_pred CCcccCCCCCceeeeecccc
Q 008295 309 GIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 309 g~~~lD~~gnn~LhiApLe~ 328 (571)
++..|..|.++||+|....
T Consensus 62 -~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 62 -PHILAKERESALSLASTGG 80 (172)
T ss_dssp -TTCCCTTCCCHHHHHHHTT
T ss_pred -chhhcccCCCHHHHHHHCC
Confidence 9999999999999998773
No 56
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=98.93 E-value=7.1e-11 Score=116.82 Aligned_cols=100 Identities=11% Similarity=0.110 Sum_probs=78.6
Q ss_pred CCCCCCCccccccccCCc----------ccCCCCcCC---CCccCCCchhHhhhcccCCcccccccccccceEEEEeccC
Q 008295 228 GTVPKSSNSTLFDDYGRS----------ISFPSAKDS---RSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG 294 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~----------~~~~~~~~~---~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g 294 (571)
..|.|+||+|+..+.-.- +........ -.++..++.+||+.||.+|+++|.+|..|+||||+|++.|
T Consensus 84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g 163 (269)
T 4b93_B 84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG 163 (269)
T ss_dssp TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence 457899999988764222 111111100 0245567889999999999999999999999999999999
Q ss_pred CchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008295 295 GQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 295 ~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
+.++|++|++.|+| ++..|..|.|+||+|....
T Consensus 164 ~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g 196 (269)
T 4b93_B 164 HHELVALLLQHGAS-INASNNKGNTALHEAVIEK 196 (269)
T ss_dssp CGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTT
T ss_pred CHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcC
Confidence 99999999999999 9999999999999997663
No 57
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=98.93 E-value=7.2e-11 Score=106.91 Aligned_cols=78 Identities=17% Similarity=0.134 Sum_probs=54.3
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
.|.|+||+|+..+. .++|+.||++|+++|.+|..|+|+||+|+..|+.++++.|++.|++
T Consensus 46 ~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 105 (169)
T 2y1l_E 46 SGWTPLHLAAFNGH--------------------LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105 (169)
T ss_dssp TSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 45677787765443 6677777777777777777777777777777777777777777777
Q ss_pred CCcccCCCCCceeeeeccc
Q 008295 309 GIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 309 g~~~lD~~gnn~LhiApLe 327 (571)
++..|.+|.|+||+|...
T Consensus 106 -~~~~~~~g~t~L~~A~~~ 123 (169)
T 2y1l_E 106 -VNANDMEGHTPLHLAAMF 123 (169)
T ss_dssp -TTCCCTTSCCHHHHHHHT
T ss_pred -CCCCCCCCCCHHHHHHHc
Confidence 666677777777776655
No 58
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=98.92 E-value=8.6e-11 Score=105.50 Aligned_cols=79 Identities=13% Similarity=0.048 Sum_probs=66.5
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
|.|.|+||+|+..+. .++|+.||+.|+++|.+|..|.|+||+|++.|+.++++.|++.|+
T Consensus 1 G~~~t~L~~A~~~g~--------------------~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 60 (167)
T 3v31_A 1 GANSLSVHQLAAQGE--------------------MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60 (167)
T ss_dssp CTTCCCHHHHHHTTC--------------------HHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCcchHHHHHHCCC--------------------HHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 678899999876654 888888888888888888888888888888888888888888888
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
+ ++..|..|.++||+|...
T Consensus 61 ~-~~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 61 D-PQLLGKGRESALSLACSK 79 (167)
T ss_dssp C-TTCCCTTCCCHHHHHHHH
T ss_pred C-CCCcCCCCCcHHHHHHHc
Confidence 8 888888888888887544
No 59
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=98.92 E-value=1e-10 Score=112.80 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=38.3
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
.++|+.||+.|+++|.+|..|+|+||+|+..|+.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 34 ~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~tpLh~A~~~ 97 (229)
T 2vge_A 34 LEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCAASC 97 (229)
T ss_dssp HHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHc
Confidence 5566666666666666666666666666666655666666666665 555566666666665544
No 60
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=98.92 E-value=8.1e-11 Score=110.67 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=64.8
Q ss_pred ccCCCchhHhhhcccCCcccccccc-------------cccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeee
Q 008295 257 SVGSGSSKIVRAVPKVDTHQDVKSG-------------VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRI 323 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~-------------~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~Lhi 323 (571)
++..|+.+||+.||++|++++.++. .|+|+||+|++.|+.++++.|++.|+| ++..|.+|.|+||+
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~ 160 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHI 160 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHH
Confidence 3445679999999999999999876 799999999999999999999999999 99999999999999
Q ss_pred ecccc
Q 008295 324 YPLEN 328 (571)
Q Consensus 324 ApLe~ 328 (571)
|....
T Consensus 161 A~~~~ 165 (232)
T 2rfa_A 161 LILQP 165 (232)
T ss_dssp HHTCS
T ss_pred HHHcC
Confidence 97664
No 61
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=98.91 E-value=5.4e-11 Score=114.29 Aligned_cols=63 Identities=6% Similarity=-0.161 Sum_probs=22.9
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
.++|+.||.+|+++|.. ..+.|+||+|++.|+.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 18 ~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 18 RKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCA 80 (239)
T ss_dssp --------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHH
T ss_pred HHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence 44555555555555532 3445555555555555555555555554 555555555555555433
No 62
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=98.91 E-value=6.8e-11 Score=104.76 Aligned_cols=64 Identities=20% Similarity=0.210 Sum_probs=53.8
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
.++|+.|+++|+++|.+|..|+|+||+|++.|+.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 48 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 111 (156)
T 1bd8_A 48 TAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQE 111 (156)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHh
Confidence 7888888888888888888888888888888888888888888888 888888888888888765
No 63
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=98.91 E-value=1.5e-10 Score=102.55 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=39.1
Q ss_pred hhHhhhcccC-CcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 263 SKIVRAVPKV-DTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 263 ~~iVr~Ll~a-gA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
.++|+.||.. +.++|.+|..|+|+||+ +..|+.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 15 ~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 15 VQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHc
Confidence 6666666655 33666666666666666 666666666666666666 666666666666666554
No 64
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=98.91 E-value=6.6e-11 Score=119.42 Aligned_cols=83 Identities=11% Similarity=0.015 Sum_probs=73.8
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008295 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (571)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~G 306 (571)
...|.|+||+|+.... .|+.+||+.||..||++|.+|..|+||||+|+..|+.+++++|++.|
T Consensus 187 ~~~g~t~Lh~A~~~~~-----------------~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g 249 (301)
T 2b0o_E 187 QAPEELVLHLAVKVAN-----------------QASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249 (301)
T ss_dssp CSCEECHHHHHHHTCC-----------------TTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCccHHHHHHHhcc-----------------cCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 3467788999887521 24699999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeeeeccc
Q 008295 307 LDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 307 adg~~~lD~~gnn~LhiApLe 327 (571)
+| +++.|.+|.|+||+|...
T Consensus 250 ad-~~~~d~~G~TpL~~A~~~ 269 (301)
T 2b0o_E 250 AL-VGTVNEAGETALDIARKK 269 (301)
T ss_dssp CC-CSCCCTTSCCHHHHHHHH
T ss_pred CC-CCCcCCCCCCHHHHHHHc
Confidence 99 999999999999998543
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=98.91 E-value=9e-11 Score=106.26 Aligned_cols=90 Identities=18% Similarity=0.132 Sum_probs=75.2
Q ss_pred cCcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHH
Q 008295 225 GARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQ 304 (571)
Q Consensus 225 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq 304 (571)
.....+.++|++|+..+. .++|+.||+.|+++|.+|..|+|+||+|++.|+.++++.|++
T Consensus 9 ~~~~~~~~~l~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 68 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGR--------------------DDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK 68 (169)
T ss_dssp ----CHHHHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCcccchHHHHHHcCC--------------------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 333445567888776654 999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCCCCceeeeecccc---ccccccc
Q 008295 305 IGLDGIRMLDPNTSRTLRIYPLEN---ITRCELA 335 (571)
Q Consensus 305 ~Gadg~~~lD~~gnn~LhiApLe~---Itr~~l~ 335 (571)
.|++ ++..|..|.++||+|.... +.+.++.
T Consensus 69 ~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 101 (169)
T 2y1l_E 69 NGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLK 101 (169)
T ss_dssp TTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 9999 9999999999999998763 3444444
No 66
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=98.91 E-value=1.3e-10 Score=104.01 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=70.9
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..+.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|+ .|+.++++.|++.|+
T Consensus 10 ~~~~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~ 68 (156)
T 1bi7_B 10 EPSADWLATAAARGR--------------------VEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGA 68 (156)
T ss_dssp CCSTTHHHHHHHHTC--------------------HHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC
T ss_pred ccchHHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCC
Confidence 456788999877665 99999999999999999999999999986 889999999999999
Q ss_pred CCCcccCCCCCc-eeeeeccc
Q 008295 308 DGIRMLDPNTSR-TLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn-~LhiApLe 327 (571)
+ ++..|..|.+ +||+|...
T Consensus 69 ~-~~~~d~~g~ttpL~~A~~~ 88 (156)
T 1bi7_B 69 E-PNCADPATLTRPVHDAARE 88 (156)
T ss_dssp C-CCCCCTTTCCCHHHHHHHH
T ss_pred C-CCCcCCCCCcHHHHHHHHC
Confidence 9 9999999999 99999655
No 67
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=98.90 E-value=1e-10 Score=115.11 Aligned_cols=84 Identities=13% Similarity=0.115 Sum_probs=56.4
Q ss_pred CcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHc
Q 008295 226 ARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI 305 (571)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~ 305 (571)
....+.|+||+|+.... .+..+||+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.
T Consensus 207 ~~~~~~t~L~~A~~~~~-----------------~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 269 (351)
T 3utm_A 207 QPQSHETALHCAVASLH-----------------PKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH 269 (351)
T ss_dssp CTTTCCCHHHHHHHCCS-----------------TTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHhC-----------------ccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 34567788888887643 2336666666666766666666666777777666666666667776
Q ss_pred CCCCCcccCCCCCceeeeeccc
Q 008295 306 GLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 306 Gadg~~~lD~~gnn~LhiApLe 327 (571)
|++ ++..|..|.|+||+|...
T Consensus 270 ga~-~n~~d~~g~t~L~~A~~~ 290 (351)
T 3utm_A 270 GAK-MNALDSLGQTALHRAALA 290 (351)
T ss_dssp TCC-TTCCCTTSCCHHHHHHHH
T ss_pred CCC-CCCcCCCCCCHHHHHHHc
Confidence 666 666666666666666554
No 68
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=98.90 E-value=8.4e-11 Score=113.22 Aligned_cols=80 Identities=10% Similarity=-0.005 Sum_probs=63.8
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008295 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (571)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~G 306 (571)
...|.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|++.|+.+++++|++.|
T Consensus 121 ~~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 180 (253)
T 1yyh_A 121 MHDGTTPLILAARLAV--------------------EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180 (253)
T ss_dssp CTTCCCHHHHHHHHTC--------------------SSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHcCh--------------------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 3467899999887654 67888888888888888888888888888888888888888888
Q ss_pred CCCCcccCCCCCceeeeeccc
Q 008295 307 LDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 307 adg~~~lD~~gnn~LhiApLe 327 (571)
++ +++.|..|.|+||+|...
T Consensus 181 a~-~~~~~~~g~tpL~~A~~~ 200 (253)
T 1yyh_A 181 AN-KDMQNNREETPLFLAARE 200 (253)
T ss_dssp CC-TTCCCTTSCCHHHHHHHH
T ss_pred CC-CCCcCCCCCCHHHHHHHC
Confidence 88 778888888888887655
No 69
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=98.90 E-value=1.8e-10 Score=97.67 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=63.8
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
.|.|+||+|+..+. .+||+.||+.|+++|.+|..|+|+||+|++.|+.+++++|+++|++
T Consensus 41 ~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 100 (115)
T 2l6b_A 41 DGNTPLHLAAKNGH--------------------AEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100 (115)
T ss_dssp SSCCTTHHHHTTTC--------------------HHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSS
T ss_pred CCCCHHHHHHHcCc--------------------HHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 56799999887654 8999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCce
Q 008295 309 GIRMLDPNTSRT 320 (571)
Q Consensus 309 g~~~lD~~gnn~ 320 (571)
++..+..+.++
T Consensus 101 -~n~~~~~~~~~ 111 (115)
T 2l6b_A 101 -VNARSWGSSHH 111 (115)
T ss_dssp -HHHHSCCCC--
T ss_pred -CCcCCcccccc
Confidence 98888887654
No 70
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=98.90 E-value=9.3e-11 Score=98.97 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=35.9
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008295 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiA 324 (571)
.++|+.|++.|++++.+|..|+|+||+|+..|+.++++.|++.|++ ++..|..|.++||+|
T Consensus 48 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A 108 (126)
T 1n0r_A 48 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLA 108 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred HHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CcccCCCCCCHHHHH
Confidence 5555555555555555555555556555555555555555555555 555555555555555
No 71
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=98.90 E-value=1.2e-10 Score=109.57 Aligned_cols=79 Identities=11% Similarity=0.060 Sum_probs=47.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|+
T Consensus 109 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 168 (237)
T 3b7b_A 109 DGGWTPMIWATEYKH--------------------VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC 168 (237)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 456788888776543 555566666666555555555666666665555555666666665
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
+ ++..|..|.|+||+|...
T Consensus 169 ~-~~~~~~~g~t~L~~A~~~ 187 (237)
T 3b7b_A 169 D-LHAVNIHGDSPLHIAARE 187 (237)
T ss_dssp C-TTCCCTTCCCHHHHHHHT
T ss_pred C-CCCcCCCCCCHHHHHHHh
Confidence 5 555555555666555444
No 72
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=98.89 E-value=9.2e-11 Score=107.89 Aligned_cols=79 Identities=6% Similarity=-0.089 Sum_probs=73.7
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|+
T Consensus 33 ~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 92 (192)
T 2rfm_A 33 SYNRTPLMVACMLGM--------------------ENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS 92 (192)
T ss_dssp TTCCCHHHHHHHHTC--------------------GGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCC
Confidence 357899999887765 899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
+ ++..|..|.|+||+|...
T Consensus 93 ~-~~~~~~~g~t~L~~A~~~ 111 (192)
T 2rfm_A 93 N-VNTKDFSGKTPLMWSIIF 111 (192)
T ss_dssp C-TTCCCTTSCCHHHHHHHH
T ss_pred C-CCCCCCCCCcHHHHHHHc
Confidence 9 999999999999999876
No 73
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=98.89 E-value=9.3e-11 Score=105.25 Aligned_cols=78 Identities=12% Similarity=0.025 Sum_probs=64.9
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
.|.|+||+|+..+. .++|+.|++.|+++|.+|..+.|+||+|+..|+.++++.|++.|++
T Consensus 35 ~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 94 (167)
T 3v31_A 35 EGFTPLMWAAAHGQ--------------------IAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 94 (167)
T ss_dssp TSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHCCC--------------------HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Confidence 46788998776554 8888888888888888888888888888888888888888888888
Q ss_pred CCcccCCCCCceeeeeccc
Q 008295 309 GIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 309 g~~~lD~~gnn~LhiApLe 327 (571)
++..|..|.|+||+|...
T Consensus 95 -~~~~~~~g~t~L~~A~~~ 112 (167)
T 3v31_A 95 -VNEYDWNGGTPLLYAVHG 112 (167)
T ss_dssp -TTCCCTTSCCHHHHHHHT
T ss_pred -CCcCCCCCCCHHHHHHHc
Confidence 888888888888888765
No 74
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=98.88 E-value=8.1e-11 Score=110.93 Aligned_cols=71 Identities=10% Similarity=0.079 Sum_probs=66.3
Q ss_pred CccCCCchhHhhhcccC-CcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 256 SSVGSGSSKIVRAVPKV-DTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 256 ~~~~~g~~~iVr~Ll~a-gA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
-++..|+.+||+.||.. |+++|.+|..|+||||+|++.|+.+++++|++.|++ +++.|.+|.|+||+|...
T Consensus 112 ~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~ 183 (222)
T 3ehr_A 112 WACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNA 183 (222)
T ss_dssp HHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSH
T ss_pred HHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcch
Confidence 35677889999999999 999999999999999999999999999999999999 999999999999998544
No 75
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=98.87 E-value=1.2e-10 Score=112.77 Aligned_cols=79 Identities=8% Similarity=-0.014 Sum_probs=70.8
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
+|.|+||+|+..+. .++|+.||+.|+++|.+|..|.|+||+|++.|+.++++.|++.|++
T Consensus 2 ~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 61 (261)
T 2xai_A 2 SDWSPMHEAAIHGH--------------------QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61 (261)
T ss_dssp --CCHHHHHHHHTC--------------------HHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 47899999887665 8999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCceeeeecccc
Q 008295 309 GIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 309 g~~~lD~~gnn~LhiApLe~ 328 (571)
++..|..|.|+||+|....
T Consensus 62 -~~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 62 -VNGVTADWHTPLFNACVSG 80 (261)
T ss_dssp -TTCCCTTSCCHHHHHHHHT
T ss_pred -CCCCCCCCCCHHHHHHHcC
Confidence 9999999999999986653
No 76
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=98.86 E-value=1.6e-10 Score=120.81 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=54.4
Q ss_pred chhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 262 SSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 262 ~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
+.+||+.||.+||++|.+|..|+||||+|+..|+.+++++|+++|++ +++.|.+|.|+||+|...
T Consensus 247 ~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~ 311 (368)
T 3jue_A 247 SLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMET 311 (368)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHC
Confidence 48888888888888888888888888888888888888888888888 888888888888887443
No 77
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=98.86 E-value=7.4e-11 Score=113.09 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=70.2
Q ss_pred CCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhccc---CCcccccccccccceEEEEec--cCCch-------
Q 008295 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPK---VDTHQDVKSGVQKFRVKLLAE--SGGQS------- 297 (571)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~---agA~vn~kd~~~kTpLHlaa~--~g~~~------- 297 (571)
|.|+||+|+..+. .+||+.||+ +||++|.+|..|+||||+|++ .++.+
T Consensus 136 g~tpL~~A~~~~~--------------------~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~ 195 (256)
T 2etb_A 136 GELPLSLAACTKQ--------------------WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195 (256)
T ss_dssp CSSHHHHHHHTTC--------------------HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred CCCHHHHHHHcCC--------------------HHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHH
Confidence 7899999887654 999999999 999999999999999999998 77777
Q ss_pred HHHHHHHcCCCCC-------cccCCCCCceeeeeccc
Q 008295 298 TMDVLCQIGLDGI-------RMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 298 iv~vLlq~Gadg~-------~~lD~~gnn~LhiApLe 327 (571)
++++|++.|++ + ++.|..|.|+||+|...
T Consensus 196 iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~ 231 (256)
T 2etb_A 196 MYDGLLQMGAR-LCPTVQLEEISNHQGLTPLKLAAKE 231 (256)
T ss_dssp HHHHHHHHHHH-HSTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHcCCC-cccccccccccCCCCCCHHHHHHHh
Confidence 99999999999 7 88999999999998554
No 78
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=98.86 E-value=8.1e-11 Score=114.05 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=69.3
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
.|.|+||+|+..+ +.++|+.||. |+++|.+|..|+||||+|+..|+.++|++|++.|++
T Consensus 44 ~g~t~L~~A~~~g--------------------~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 102 (244)
T 3ui2_A 44 EYETPWWTAARKA--------------------DEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 102 (244)
T ss_dssp HHHHHHHHHHTTT--------------------CHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHcC--------------------CHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 3457788866554 4999999999 999999999999999999999999999999999999
Q ss_pred CCcccC-CCCCceeeeecccc
Q 008295 309 GIRMLD-PNTSRTLRIYPLEN 328 (571)
Q Consensus 309 g~~~lD-~~gnn~LhiApLe~ 328 (571)
++..| ..|.|+||+|....
T Consensus 103 -~~~~~~~~g~t~L~~A~~~g 122 (244)
T 3ui2_A 103 -LDHRDMRGGLTALHMAAGYV 122 (244)
T ss_dssp -TTCCCSSSCCCHHHHHHHTT
T ss_pred -CCcCCCCCCCCHHHHHHHcC
Confidence 88888 88999999997653
No 79
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=98.85 E-value=1.3e-10 Score=98.02 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=72.1
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
.|.|+||+|+..+. .++|+.|++.|++++.+|..++|+||+|+..|+.++++.|++.|++
T Consensus 1 ~g~t~L~~A~~~~~--------------------~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 60 (126)
T 1n0r_A 1 NGRTPLHLAARNGH--------------------LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60 (126)
T ss_dssp CCCCHHHHHHHHTC--------------------HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCccHHHHHHHcCc--------------------HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Confidence 36788999877654 9999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCceeeeecccc
Q 008295 309 GIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 309 g~~~lD~~gnn~LhiApLe~ 328 (571)
++..|..|.|+||+|....
T Consensus 61 -~~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 61 -VNAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp -TTCCCTTSCCHHHHHHHTT
T ss_pred -CcccCCCCCcHHHHHHHcC
Confidence 9999999999999986553
No 80
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=98.84 E-value=9.1e-11 Score=113.20 Aligned_cols=96 Identities=9% Similarity=-0.022 Sum_probs=75.6
Q ss_pred CCCCCCCccccccc----------cCCcccCCCCcCCC---CccCCCchhHhhhcccCCcccccccccccceEEEEeccC
Q 008295 228 GTVPKSSNSTLFDD----------YGRSISFPSAKDSR---SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG 294 (571)
Q Consensus 228 ~~~~~~~~~a~~~~----------~~~~~~~~~~~~~~---~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g 294 (571)
.++.|+||+|+..+ .|..|......... -++..|+.+||+.||+.||++|.+|..|+||||+|+..|
T Consensus 19 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g 98 (229)
T 2vge_A 19 LNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN 98 (229)
T ss_dssp SCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred cchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 34556778877653 23333322211110 356678899999999999999999999999999999999
Q ss_pred CchHHHHHHHcCCCCCcccC-CCCCceeeee
Q 008295 295 GQSTMDVLCQIGLDGIRMLD-PNTSRTLRIY 324 (571)
Q Consensus 295 ~~~iv~vLlq~Gadg~~~lD-~~gnn~LhiA 324 (571)
+.+++++|++.|++ ++..| ..|.|+||+|
T Consensus 99 ~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A 128 (229)
T 2vge_A 99 DTVICMALVQHGAA-IFATTLSDGATAFEKC 128 (229)
T ss_dssp CHHHHHHHHTTTCC-TTCCCSSTTCCTGGGC
T ss_pred CHHHHHHHHHcCCC-cccccCCCCCCHHHHH
Confidence 99999999999999 88886 6999999998
No 81
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=98.84 E-value=2.3e-10 Score=94.03 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=56.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .+||+.|+++||++|.+|..|+||||+|++.|+.++++.|++.|+
T Consensus 33 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 33 KNGRTPLHLAARNGH--------------------LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 356799999887654 999999999999999999999999999999999999999999998
Q ss_pred C
Q 008295 308 D 308 (571)
Q Consensus 308 d 308 (571)
+
T Consensus 93 ~ 93 (93)
T 1n0q_A 93 Y 93 (93)
T ss_dssp C
T ss_pred C
Confidence 6
No 82
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=98.84 E-value=2.2e-10 Score=107.43 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=55.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .++|+.|++.|++++.+|..++|+||+|++.|+.++++.|++.|+
T Consensus 104 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 163 (231)
T 3aji_A 104 QNGCTPLHYAASKNR--------------------HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163 (231)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Confidence 346788998876553 667777777777777777777777777777777777777777777
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
+ ++..|..|.|+||+|...
T Consensus 164 ~-~~~~~~~g~t~L~~A~~~ 182 (231)
T 3aji_A 164 S-TNIQDTEGNTPLHLACDE 182 (231)
T ss_dssp C-SCCCCTTSCCHHHHHHHT
T ss_pred C-ccccCCCCCCHHHHHHHC
Confidence 6 666677777777776554
No 83
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=98.84 E-value=2.3e-10 Score=118.11 Aligned_cols=79 Identities=9% Similarity=-0.006 Sum_probs=49.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .+||+.|+++|+++|.+|..|+|+||+|++.|+.++|+.|+++|+
T Consensus 276 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 335 (437)
T 1n11_A 276 KSGLTPLHLVAQEGH--------------------VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 335 (437)
T ss_dssp TTCCCHHHHHHHHTC--------------------HHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Confidence 456788998876553 556666666666666666666666666666666666666666666
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
| ++..|..|.|+||+|...
T Consensus 336 d-~n~~~~~g~t~L~~A~~~ 354 (437)
T 1n11_A 336 D-VNAKTKLGYSPLHQAAQQ 354 (437)
T ss_dssp C-TTCCCTTSCCHHHHHHHT
T ss_pred C-CCCCCCCCCCHHHHHHHC
Confidence 6 556666666666665544
No 84
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=98.84 E-value=2.4e-10 Score=112.44 Aligned_cols=79 Identities=11% Similarity=0.034 Sum_probs=72.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .+||+.||+.|+++|.+|..|+||||+|++.|+.++++.|++.|+
T Consensus 56 ~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~ 115 (351)
T 3utm_A 56 GRKSTPLHLAAGYNR--------------------VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115 (351)
T ss_dssp TTCCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCC
Confidence 457899999876654 999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
+ ++..|..|.|+||+|...
T Consensus 116 ~-~~~~~~~g~t~L~~A~~~ 134 (351)
T 3utm_A 116 C-VNAMDLWQFTPLHEAASK 134 (351)
T ss_dssp C-TTCCCTTCCCHHHHHHHT
T ss_pred C-CCCCCCCCCCHHHHHHHc
Confidence 9 999999999999999765
No 85
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=98.83 E-value=2.4e-10 Score=107.50 Aligned_cols=79 Identities=8% Similarity=0.019 Sum_probs=70.5
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHH----HHHHH
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTM----DVLCQ 304 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv----~vLlq 304 (571)
.|.|+||+|+..+. .+||+.||++||++|.+|..|+||||+|++.|+.+++ ++|++
T Consensus 120 ~g~t~L~~A~~~~~--------------------~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~ 179 (232)
T 2rfa_A 120 YGEHPLSFAACVGS--------------------EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLS 179 (232)
T ss_dssp CCSSHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHh
Confidence 57899999887664 8999999999999999999999999999999999887 99999
Q ss_pred cCCCCC-----cccCCCCCceeeeeccc
Q 008295 305 IGLDGI-----RMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 305 ~Gadg~-----~~lD~~gnn~LhiApLe 327 (571)
.|++.. ++.|..|.|+||+|...
T Consensus 180 ~g~~~~~~~~~~~~~~~g~tpl~~A~~~ 207 (232)
T 2rfa_A 180 YDGGDHLKSLELVPNNQGLTPFKLAGVE 207 (232)
T ss_dssp TTCSCSSCCGGGCCCTTSCCHHHHHHHH
T ss_pred cCCchhhhhhhccCCCCCCCHHHHHHHc
Confidence 999832 58899999999998544
No 86
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=98.83 E-value=2.2e-10 Score=115.59 Aligned_cols=66 Identities=9% Similarity=0.043 Sum_probs=34.4
Q ss_pred CCchhHhhhcccCCcc-----cccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecc
Q 008295 260 SGSSKIVRAVPKVDTH-----QDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPL 326 (571)
Q Consensus 260 ~g~~~iVr~Ll~agA~-----vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApL 326 (571)
.|+.+||+.||.+|++ +|.+|..|.|+||+|++.|+.++|++|++.|+| +++.|..|.|+||+|..
T Consensus 183 ~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~ 253 (364)
T 3ljn_A 183 FRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVR 253 (364)
T ss_dssp TTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHH
T ss_pred cCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence 3445555555555555 555555555555555555555555555555555 55555555555555433
No 87
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=98.83 E-value=2.1e-10 Score=110.48 Aligned_cols=80 Identities=11% Similarity=0.055 Sum_probs=73.9
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCc-ccccccccccceEEEEeccCCchHHHHHHHcC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDT-HQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA-~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~G 306 (571)
..|.|+||+|+..+. .+||+.|++.|+ +++.+|..|+|+||+|++.|+.++++.|++.|
T Consensus 88 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 147 (253)
T 1yyh_A 88 NMGRTPLHAAVSADA--------------------QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 147 (253)
T ss_dssp TTSCCHHHHHHHHTC--------------------HHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcC
Confidence 567899999887654 899999999998 99999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeeeecccc
Q 008295 307 LDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 307 adg~~~lD~~gnn~LhiApLe~ 328 (571)
++ ++..|..|.|+||+|....
T Consensus 148 ~~-~~~~d~~g~t~L~~A~~~~ 168 (253)
T 1yyh_A 148 AD-VNAVDDLGKSALHWAAAVN 168 (253)
T ss_dssp CC-TTCBCTTSCBHHHHHHHHT
T ss_pred CC-CCCcCCCCCCHHHHHHHcC
Confidence 99 9999999999999998763
No 88
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=98.83 E-value=1e-10 Score=112.07 Aligned_cols=79 Identities=9% Similarity=0.011 Sum_probs=70.7
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhccc---CCcccccccccccceEEEEeccCC---------
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPK---VDTHQDVKSGVQKFRVKLLAESGG--------- 295 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~---agA~vn~kd~~~kTpLHlaa~~g~--------- 295 (571)
..|.|+||+|+..+. .+||+.||+ +||++|.+|..|+||||+|++.|+
T Consensus 138 ~~g~tpL~~A~~~g~--------------------~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~ 197 (260)
T 3jxi_A 138 YFGELPLSLAACTNQ--------------------PHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFV 197 (260)
T ss_dssp CSCSSHHHHHHHTTC--------------------HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHH
T ss_pred cCCCCHHHHHHHcCC--------------------HHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHH
Confidence 457899999877654 999999999 999999999999999999998777
Q ss_pred chHHHHHHHcCCCCC-------cccCCCCCceeeeeccc
Q 008295 296 QSTMDVLCQIGLDGI-------RMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 296 ~~iv~vLlq~Gadg~-------~~lD~~gnn~LhiApLe 327 (571)
.+++++|++.|++ + ++.|..|.|+||+|...
T Consensus 198 ~~~v~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~ 235 (260)
T 3jxi_A 198 TKMYDLLLIKCAK-LFPDTNLEALLNNDGLSPLMMAAKT 235 (260)
T ss_dssp HHHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHhCcc-cccccchhhcccCCCCCHHHHHHHc
Confidence 5899999999999 7 67999999999998554
No 89
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=98.83 E-value=2.3e-10 Score=106.76 Aligned_cols=80 Identities=9% Similarity=-0.049 Sum_probs=74.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCC--cccccccccccceEEEEeccCCchHHHHHHHc
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVD--THQDVKSGVQKFRVKLLAESGGQSTMDVLCQI 305 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~ag--A~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~ 305 (571)
..|.|+||+|+..+. .++|+.|++.| ++++.+|..|.|+||+|++.|+.++++.|++.
T Consensus 70 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 129 (228)
T 2dzn_A 70 DSGWTPFHIACSVGN--------------------LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN 129 (228)
T ss_dssp TTSCCHHHHHHHHCC--------------------HHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc
Confidence 467899999998765 89999999999 89999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCceeeeecccc
Q 008295 306 GLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 306 Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
|++ ++..|..|.|+||+|....
T Consensus 130 g~~-~~~~~~~g~t~L~~A~~~~ 151 (228)
T 2dzn_A 130 GAS-VRIKDKFNQIPLHRAASVG 151 (228)
T ss_dssp TCC-SCCCCTTSCCHHHHHHHTT
T ss_pred CCC-ccccCCCCCCHHHHHHHcC
Confidence 999 9999999999999998763
No 90
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=98.82 E-value=1.4e-10 Score=106.87 Aligned_cols=78 Identities=12% Similarity=0.080 Sum_probs=69.7
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
.|.|+||+|+..+. .++|+.||. |+++|.+|..|+||||+|++.|+.++++.|++.|++
T Consensus 43 ~g~t~L~~A~~~g~--------------------~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 101 (183)
T 3deo_A 43 EYETPWWTAARKAD--------------------EQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 101 (183)
T ss_dssp HHHHHHHHHHHTTC--------------------HHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 44577888776554 899999999 999999999999999999999999999999999999
Q ss_pred CCcccC-CCCCceeeeecccc
Q 008295 309 GIRMLD-PNTSRTLRIYPLEN 328 (571)
Q Consensus 309 g~~~lD-~~gnn~LhiApLe~ 328 (571)
++..| ..|+|+||+|....
T Consensus 102 -~~~~~~~~g~tpL~~A~~~~ 121 (183)
T 3deo_A 102 -LDHRDMRGGLTALHMAAGYV 121 (183)
T ss_dssp -TTCCCSSSSCCHHHHHHHTT
T ss_pred -CCcCCCCCCCCHHHHHHhcC
Confidence 88888 89999999996553
No 91
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=98.82 E-value=2.8e-10 Score=110.85 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=46.8
Q ss_pred chhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 262 SSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 262 ~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
+.+||+.||.+||++|.+|..|+||||+|+..|+.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 85 ~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~ 149 (299)
T 1s70_B 85 NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEE 149 (299)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSH
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhc
Confidence 36777777777777777777777777777777777777777777777 667777777777776443
No 92
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=98.82 E-value=2.6e-10 Score=106.38 Aligned_cols=79 Identities=10% Similarity=0.002 Sum_probs=66.9
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .+||+.|++.|+++|.+|..|+|+||+|+..|+.++++.|++.|+
T Consensus 90 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 149 (223)
T 2f8y_A 90 HDGTTPLILAARLAV--------------------EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 149 (223)
T ss_dssp TTCCCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCcHHHHHHHhCc--------------------HHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 457789999887654 788888888888888888888888888888888888888888888
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
+ ++..|..|.|+||+|...
T Consensus 150 ~-~~~~~~~g~t~L~~A~~~ 168 (223)
T 2f8y_A 150 N-KDMQNNREETPLFLAARE 168 (223)
T ss_dssp C-TTCCCTTCCCHHHHHHHH
T ss_pred C-CCCcCCCCcCHHHHHHHc
Confidence 8 888888888888888665
No 93
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=98.80 E-value=2.5e-10 Score=107.39 Aligned_cols=80 Identities=10% Similarity=0.015 Sum_probs=72.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCC-cccccccccccceEEEEeccCCchHHHHHHHcC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVD-THQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~ag-A~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~G 306 (571)
..|.|+||+|+..+. .++|+.|++.| ++++.+|..|.|+||+|++.|+.++++.|++.|
T Consensus 75 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 134 (237)
T 3b7b_A 75 AEGSTCLHLAAKKGH--------------------YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134 (237)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHcCC--------------------HHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 356789999886654 99999999999 899999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeeeecccc
Q 008295 307 LDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 307 adg~~~lD~~gnn~LhiApLe~ 328 (571)
++ ++..|..|.++||+|....
T Consensus 135 ~~-~~~~~~~g~t~L~~A~~~~ 155 (237)
T 3b7b_A 135 SD-INIRDNEENICLHWAAFSG 155 (237)
T ss_dssp CC-TTCCCTTSCCHHHHHHHHC
T ss_pred CC-CCccCCCCCCHHHHHHHCC
Confidence 99 9999999999999987653
No 94
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=98.80 E-value=3.7e-10 Score=109.40 Aligned_cols=77 Identities=12% Similarity=0.087 Sum_probs=39.8
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008295 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (571)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~G 306 (571)
+..|.|+||+|+..+. .+||+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|
T Consensus 98 ~~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 157 (261)
T 2xai_A 98 ESDLASPIHEAARRGH--------------------VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157 (261)
T ss_dssp SCTTCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCc--------------------HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 3457788888876543 44444444444444444444444444444444444444444444
Q ss_pred CCCCcccCCCCCceeeeec
Q 008295 307 LDGIRMLDPNTSRTLRIYP 325 (571)
Q Consensus 307 adg~~~lD~~gnn~LhiAp 325 (571)
++ ++. |..|.|+||+|.
T Consensus 158 ~~-~~~-~~~g~t~Lh~A~ 174 (261)
T 2xai_A 158 AD-VNQ-GKGQDSPLHAVA 174 (261)
T ss_dssp CC-TTC-CBTTBCHHHHHH
T ss_pred CC-CCC-CCCCCChHHHHH
Confidence 44 332 444444444443
No 95
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=98.79 E-value=4.9e-10 Score=110.56 Aligned_cols=83 Identities=8% Similarity=-0.006 Sum_probs=75.2
Q ss_pred ccCcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHH
Q 008295 224 YGARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLC 303 (571)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLl 303 (571)
++-...|.|+||+|+..+. .++|+.||..|+++|.+|..|+|+||+|++.|+.++++.|+
T Consensus 53 ~~~~~~g~t~L~~Aa~~g~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 112 (285)
T 3d9h_A 53 MGDAVSDWSPMHEAAIHGH--------------------QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL 112 (285)
T ss_dssp CSSSCCSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCCccCCCHHHHHHHcCC--------------------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHH
Confidence 3445667899999887664 89999999999999999999999999999999999999999
Q ss_pred HcCCCCCcccCCCCCceeeeeccc
Q 008295 304 QIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 304 q~Gadg~~~lD~~gnn~LhiApLe 327 (571)
+.|++ ++..|..|.|+||+|...
T Consensus 113 ~~ga~-~~~~~~~g~t~L~~A~~~ 135 (285)
T 3d9h_A 113 KHGAQ-VNGVTADWHTPLFNACVS 135 (285)
T ss_dssp HTTCC-SSCCCTTCCCHHHHHHHH
T ss_pred HCCCC-CCCCCCCCCCHHHHHHHc
Confidence 99999 999999999999998665
No 96
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=98.78 E-value=3.7e-10 Score=114.04 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=47.7
Q ss_pred ccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeec
Q 008295 275 HQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYP 325 (571)
Q Consensus 275 ~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiAp 325 (571)
++|.+|..|+||||+|++.|+.++|++|++.|+| +++.|.+|.|+||+|.
T Consensus 275 ~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~ 324 (327)
T 1sw6_A 275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGA 324 (327)
T ss_dssp TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC-TTCCCTTSCCGGGGTC
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHH
Confidence 5888899999999999999999999999999999 9999999999999984
No 97
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=98.78 E-value=4.2e-10 Score=113.57 Aligned_cols=83 Identities=7% Similarity=0.002 Sum_probs=73.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .+.+||+.||++||++|.+|..|+|+||+|++.|+.++++.|++.|+
T Consensus 136 ~~g~t~L~~A~~~g~------------------~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 197 (364)
T 3ljn_A 136 CKGQTALHWCVGLGP------------------EYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVP 197 (364)
T ss_dssp ESCCCHHHHHHHSCG------------------GGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHcCC------------------chHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 357899999887660 13899999999999999999999999999999999999999999988
Q ss_pred CC----CcccCCCCCceeeeecccc
Q 008295 308 DG----IRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 308 dg----~~~lD~~gnn~LhiApLe~ 328 (571)
+- ++..|..|+|+||+|....
T Consensus 198 ~~~~~~~~~~~~~g~t~L~~A~~~g 222 (364)
T 3ljn_A 198 SKSSLRLDYANKQGNSHLHWAILIN 222 (364)
T ss_dssp CSSSCCTTCCCTTCCCTTHHHHTTT
T ss_pred ccccccccccCCCCCcHHHHHHHcC
Confidence 74 6788999999999997664
No 98
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=98.78 E-value=6.6e-10 Score=101.92 Aligned_cols=77 Identities=12% Similarity=-0.009 Sum_probs=47.6
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcc-cCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVP-KVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll-~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~G 306 (571)
..|.|+||+|+..+. .+||+.|+ ..+++++.+|..|.|+||+|++.|+.++++.|++.|
T Consensus 70 ~~g~t~l~~A~~~~~--------------------~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 70 SISDSPYLYAGAQGR--------------------TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129 (201)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 345677888765443 56666666 455566666666666666666666666666666666
Q ss_pred -CCCCcccCCCCCceeeeec
Q 008295 307 -LDGIRMLDPNTSRTLRIYP 325 (571)
Q Consensus 307 -adg~~~lD~~gnn~LhiAp 325 (571)
++ ++..|..|.|+||+|.
T Consensus 130 ~~~-~~~~~~~g~t~L~~A~ 148 (201)
T 3hra_A 130 RED-IDFQNDFGYTALIEAV 148 (201)
T ss_dssp CCC-TTCCCTTSCCHHHHHH
T ss_pred CCC-cCCCCCCCCCHHHHHH
Confidence 44 5566666666666655
No 99
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=98.77 E-value=2e-10 Score=111.41 Aligned_cols=78 Identities=10% Similarity=0.082 Sum_probs=70.1
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhccc---CCcccccccccccceEEEEeccCC---------c
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPK---VDTHQDVKSGVQKFRVKLLAESGG---------Q 296 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~---agA~vn~kd~~~kTpLHlaa~~g~---------~ 296 (571)
.|.|+||+|+..+. .+||+.||+ .||++|.+|..|+||||+|++.|+ .
T Consensus 147 ~g~tpL~~A~~~g~--------------------~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~ 206 (273)
T 2pnn_A 147 FGELPLSLAACTNQ--------------------LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVT 206 (273)
T ss_dssp SCBSHHHHHHHTTC--------------------HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHH
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHH
Confidence 57899999887654 999999999 999999999999999999999988 6
Q ss_pred hHHHHHHHcCCCCCc-------ccCCCCCceeeeeccc
Q 008295 297 STMDVLCQIGLDGIR-------MLDPNTSRTLRIYPLE 327 (571)
Q Consensus 297 ~iv~vLlq~Gadg~~-------~lD~~gnn~LhiApLe 327 (571)
+++++|++.|++ ++ +.|..|.|+||+|...
T Consensus 207 ~~v~~Ll~~ga~-~n~~~~~~~~~d~~g~TpL~~A~~~ 243 (273)
T 2pnn_A 207 SMYNEILILGAK-LHPTLKLEEITNRKGLTPLALAASS 243 (273)
T ss_dssp HHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHhhhh-cccccccccccCCCCCCHHHHHHHh
Confidence 899999999999 75 5899999999998544
No 100
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=98.77 E-value=5.2e-10 Score=104.27 Aligned_cols=80 Identities=11% Similarity=0.055 Sum_probs=73.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCc-ccccccccccceEEEEeccCCchHHHHHHHcC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDT-HQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA-~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~G 306 (571)
..|.|+||+|+..+. .+||+.|++.++ +++.++..++|+||+|++.|+.++++.|++.|
T Consensus 56 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 115 (223)
T 2f8y_A 56 NMGRTPLHAAVSADA--------------------QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 115 (223)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcC
Confidence 457899999886554 999999999998 99999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeeeecccc
Q 008295 307 LDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 307 adg~~~lD~~gnn~LhiApLe~ 328 (571)
++ ++..|..|.|+||+|....
T Consensus 116 ~~-~~~~~~~g~t~L~~A~~~~ 136 (223)
T 2f8y_A 116 AD-VNAVDDLGKSALHWAAAVN 136 (223)
T ss_dssp CC-TTCBCTTSCBHHHHHHHTT
T ss_pred CC-CcCcCCCCCcHHHHHHHcC
Confidence 99 9999999999999998763
No 101
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=98.77 E-value=3.6e-10 Score=105.94 Aligned_cols=80 Identities=10% Similarity=0.005 Sum_probs=73.6
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .+||+.|+.+|+++|.+|..|.|+||+|++.|+.++++.|++.|+
T Consensus 71 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 130 (231)
T 3aji_A 71 DAGWSPLHIAASAGX--------------------DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130 (231)
T ss_dssp TTSCCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCH--------------------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 457899999887654 899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe~ 328 (571)
+ ++..|..|.++||+|....
T Consensus 131 ~-~~~~~~~g~t~L~~A~~~~ 150 (231)
T 3aji_A 131 N-PDAKDHYDATAMHRAAAKG 150 (231)
T ss_dssp C-TTCCCTTSCCHHHHHHHHT
T ss_pred C-CCCcCCCCCcHHHHHHHcC
Confidence 9 9999999999999997653
No 102
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=98.77 E-value=5.7e-10 Score=114.45 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=70.5
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCC-cccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVD-THQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~ag-A~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
.|.|+||+|+..+ +.+||+.||+.| +++|.+|..|+||||+|++.|+.++|++|+++|+
T Consensus 278 ~g~t~Lh~A~~~g--------------------~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 337 (373)
T 2fo1_E 278 KGRTALHYAAQVS--------------------NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA 337 (373)
T ss_dssp CCCCTHHHHHSSC--------------------CHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHhC--------------------CHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 5678888877654 499999999876 9999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
+ +++.|..|.|+||+|...
T Consensus 338 d-~~~~d~~g~t~l~~A~~~ 356 (373)
T 2fo1_E 338 S-VEAVDATDHTARQLAQAN 356 (373)
T ss_dssp C-SSCCCSSSCCHHHHHHHT
T ss_pred C-ccCCCCCCCCHHHHHHHc
Confidence 9 999999999999998554
No 103
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=98.75 E-value=8.4e-10 Score=108.92 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=50.4
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008295 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (571)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~G 306 (571)
...|.|+||+|+..+. .+||+.||+.|+++|.+|..|+|+||+|++.|+.++++.|++.|
T Consensus 154 ~~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 213 (285)
T 3d9h_A 154 ESDLASPIHEAARRGH--------------------VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213 (285)
T ss_dssp SCTTSCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHcCC--------------------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCC
Confidence 4457899999887654 56666666666666666666666666666666666666666666
Q ss_pred CCCCcccCCCCCceeeeeccc
Q 008295 307 LDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 307 adg~~~lD~~gnn~LhiApLe 327 (571)
++ ++ .|..|.|+||+|...
T Consensus 214 a~-~~-~~~~g~t~L~~A~~~ 232 (285)
T 3d9h_A 214 AD-VN-QGKGQDSPLHAVVRT 232 (285)
T ss_dssp CC-TT-CCBTTBCHHHHHHHT
T ss_pred CC-CC-CCCCCCCHHHHHHHc
Confidence 66 44 255666666665544
No 104
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=98.75 E-value=6.7e-10 Score=109.83 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=59.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .++|+.||..|+++|.+| |+|+||+|++.|+.++++.|++.|+
T Consensus 29 ~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga 86 (285)
T 3kea_A 29 VHGHSASYYAIADNN--------------------VRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGL 86 (285)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 467799999887654 777888888887777774 6778888888777788888888887
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
+ ++..|..|.|+||+|...
T Consensus 87 ~-~~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 87 D-DSQFDDKGNTALYYAVDS 105 (285)
T ss_dssp C-TTCCCTTSCCHHHHHHHT
T ss_pred C-CCCcCCCCCcHHHHHHHc
Confidence 7 777777777888777554
No 105
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=98.75 E-value=4.7e-10 Score=110.88 Aligned_cols=79 Identities=9% Similarity=0.039 Sum_probs=72.3
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
+|.|+||+|+..+ +.+||+.||++||++|.+|..|+||||+|++.|+.++++.|++.|++
T Consensus 61 ~g~t~L~~A~~~g--------------------~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 120 (285)
T 3kea_A 61 ENEFPLHQAATLE--------------------DTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR 120 (285)
T ss_dssp TTCCHHHHHTTSS--------------------SCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG
T ss_pred CCCCHHHHHHHcC--------------------CHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Confidence 3689999987655 48999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCC-Cceeeeecccc
Q 008295 309 GIRMLDPNT-SRTLRIYPLEN 328 (571)
Q Consensus 309 g~~~lD~~g-nn~LhiApLe~ 328 (571)
++..|..| .|+||+|....
T Consensus 121 -~~~~~~~g~~t~L~~A~~~~ 140 (285)
T 3kea_A 121 -LMFYGKTGWKTSFYHAVMLN 140 (285)
T ss_dssp -GGGCSSSGGGSHHHHHHHTT
T ss_pred -CCccCCCCCCCHHHHHHHcC
Confidence 99999999 89999986653
No 106
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=98.73 E-value=8e-10 Score=103.73 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=61.0
Q ss_pred cCCCchhHhhhcccCCccccccc-ccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 258 VGSGSSKIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 258 ~~~g~~~iVr~Ll~agA~vn~kd-~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
+..|+.++|+.|++.|++++.++ ..|+|+||+|++.|+.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 124 ~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 193 (241)
T 1k1a_A 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGR 193 (241)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence 34556899999999999999998 7899999999999999999999999999 889999999999998554
No 107
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=98.71 E-value=1.1e-09 Score=100.42 Aligned_cols=78 Identities=8% Similarity=0.062 Sum_probs=66.4
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHH-cCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQ-IGL 307 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq-~Ga 307 (571)
.|.|+||+|+..+. .++|+.||++|+++|.+|..++|+||+|++.|+.++++.|++ .|+
T Consensus 38 ~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 97 (201)
T 3hra_A 38 EGNTPLNIAVHNND--------------------IEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATP 97 (201)
T ss_dssp TSCCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCc
Confidence 46788888776654 899999999999999999999999999999999999999994 555
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008295 308 DGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApLe 327 (571)
+ ++..|..|.++||+|...
T Consensus 98 ~-~~~~~~~g~t~L~~A~~~ 116 (201)
T 3hra_A 98 D-LNKHNRYGGNALIPAAEK 116 (201)
T ss_dssp C-TTCCCTTSCCSHHHHHHT
T ss_pred c-cccccCCCCcHHHHHHHc
Confidence 6 888999999999998655
No 108
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=98.70 E-value=9.1e-10 Score=113.63 Aligned_cols=100 Identities=12% Similarity=0.115 Sum_probs=70.9
Q ss_pred cCCCCCCCcccccccc----------CCcccCCCCcCCC---CccCCCchhHhhhcccCCcccccccccccceEEEEecc
Q 008295 227 RGTVPKSSNSTLFDDY----------GRSISFPSAKDSR---SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAES 293 (571)
Q Consensus 227 ~~~~~~~~~~a~~~~~----------~~~~~~~~~~~~~---~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~ 293 (571)
...|.|+||+|++.+. |..+......... -++..|+.+||+.|+..|+++|.+|..++|+||+|++.
T Consensus 11 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 11 GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp ----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHC
Confidence 3567899999998653 3333222211110 35667788888888888888888888888888888888
Q ss_pred CCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 294 GGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 294 g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
|+.++++.|+++|++ ++..|..|.++||+|...
T Consensus 91 g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~ 123 (437)
T 1n11_A 91 GHTNMVKLLLENNAN-PNLATTAGHTPLHIAARE 123 (437)
T ss_dssp TCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHc
Confidence 888888888888888 778888888888887655
No 109
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=98.68 E-value=1.4e-09 Score=103.67 Aligned_cols=79 Identities=10% Similarity=0.008 Sum_probs=70.6
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gad 308 (571)
.|.|+||+|+..+ +.+||+.||+.|++++.+|..|+|+||+|++.|+.++++.|++.|++
T Consensus 38 ~g~t~L~~A~~~g--------------------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 97 (285)
T 1wdy_A 38 GGWTPLHNAVQMS--------------------REDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97 (285)
T ss_dssp TCCCHHHHHHHTT--------------------CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCCcHHHHHHHcC--------------------CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4568888877655 48999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCceeeeecccc
Q 008295 309 GIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 309 g~~~lD~~gnn~LhiApLe~ 328 (571)
++..|..|.++||+|....
T Consensus 98 -~~~~~~~g~t~L~~A~~~~ 116 (285)
T 1wdy_A 98 -VNECDFYGFTAFMEAAVYG 116 (285)
T ss_dssp -TTCBCTTCCBHHHHHHHTT
T ss_pred -CCccCcccCCHHHHHHHhC
Confidence 8899999999999986553
No 110
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=98.68 E-value=1.9e-09 Score=108.84 Aligned_cols=67 Identities=12% Similarity=0.020 Sum_probs=63.0
Q ss_pred CCchhHhhhcccCCccccc-ccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 260 SGSSKIVRAVPKVDTHQDV-KSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 260 ~g~~~iVr~Ll~agA~vn~-kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
.+..+|++.|+..|+++|. +|..|+||||+|++.|+.++|++|++.|++ ++..|..|.|+||+|...
T Consensus 107 ~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~ 174 (327)
T 1sw6_A 107 SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKS 174 (327)
T ss_dssp HHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHS
T ss_pred hhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHh
Confidence 3458999999999999999 899999999999999999999999999999 999999999999999764
No 111
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=98.68 E-value=1.2e-09 Score=107.57 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=63.5
Q ss_pred CCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008295 259 GSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 259 ~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
..|+.++|+.|+..|+..+..|..|+||||+|++.|+.++++.|++.|+| +++.|.+|.|+||+|....
T Consensus 159 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g 227 (276)
T 4hbd_A 159 TQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHG 227 (276)
T ss_dssp SHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred hhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCC
Confidence 45678999999999999999999999999999999999999999999999 9999999999999986653
No 112
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=98.66 E-value=1.2e-09 Score=110.29 Aligned_cols=72 Identities=6% Similarity=-0.037 Sum_probs=63.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .+||++||++||++|.+|..|+||||+|++.|+.+++++|++.|+
T Consensus 224 ~~G~TpLh~A~~~g~--------------------~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga 283 (301)
T 2b0o_E 224 ADGNTALHYAALYNQ--------------------PDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 283 (301)
T ss_dssp TTCCCHHHHHHHTTC--------------------HHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence 467899999887665 899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecc
Q 008295 308 DGIRMLDPNTSRTLRIYPL 326 (571)
Q Consensus 308 dg~~~lD~~gnn~LhiApL 326 (571)
+ .|.|+||+|..
T Consensus 284 ~-------~g~tpLh~A~~ 295 (301)
T 2b0o_E 284 G-------TFAFPLHVDYS 295 (301)
T ss_dssp H-------TTSSCCC----
T ss_pred C-------CCCChhHHHHh
Confidence 8 58899999843
No 113
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=98.66 E-value=1.9e-09 Score=102.04 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=59.0
Q ss_pred CCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCC-----CcccCCCCCceeeeecccc
Q 008295 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDG-----IRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 260 ~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg-----~~~lD~~gnn~LhiApLe~ 328 (571)
.|+.+||+.||++||++|.+|..|+|+||+|++.|+.++++.|++.|++. ++..|..|.++||+|....
T Consensus 55 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 128 (236)
T 1ikn_D 55 TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128 (236)
T ss_dssp TTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTT
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcC
Confidence 34589999999999999999999999999999999999999999998752 4567888999999986553
No 114
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=98.65 E-value=1.1e-09 Score=114.50 Aligned_cols=67 Identities=9% Similarity=-0.008 Sum_probs=63.3
Q ss_pred CchhHhhhcccCCccccccc--ccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008295 261 GSSKIVRAVPKVDTHQDVKS--GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd--~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
|+.++|+.||++||++|.++ ..|.|+||+|+..|+.++|++|+++|++ +++.|..|+|+||+|....
T Consensus 211 g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh~A~~~g 279 (368)
T 3jue_A 211 PSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHATILG 279 (368)
T ss_dssp CCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence 56999999999999999998 8999999999999999999999999999 9999999999999996654
No 115
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=98.65 E-value=2e-09 Score=107.40 Aligned_cols=70 Identities=9% Similarity=0.106 Sum_probs=59.9
Q ss_pred ccCCCchhHhhhcccCCcccccccc-cccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 257 SVGSGSSKIVRAVPKVDTHQDVKSG-VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~-~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
+|..|+.+||+.||++||++|.++. .|+||||+|++.|+.+||++|+++|++ ++..|..+.++++.+...
T Consensus 32 Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~~~~ 102 (337)
T 4g8k_A 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFILAAIA 102 (337)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-hhhhccCCCchhHHHHhc
Confidence 3455569999999999999999976 589999999999999999999999999 777787777777665433
No 116
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=98.64 E-value=1.6e-09 Score=111.20 Aligned_cols=71 Identities=8% Similarity=0.062 Sum_probs=63.6
Q ss_pred ccCCCchhHhhhcc--------cCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008295 257 SVGSGSSKIVRAVP--------KVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll--------~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
++..|+.++|+.|| .+||++|.+|..|.||||+|+..|+.++|+.|++.|++ ++..|..|.|+||+|....
T Consensus 132 Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g 210 (373)
T 2fo1_E 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANR 210 (373)
T ss_dssp HHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCC
Confidence 45566677777776 89999999999999999999999999999999999999 9999999999999996653
No 117
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=98.63 E-value=2.7e-09 Score=101.60 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=44.2
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHH-cCCCCCcccCCCCCceeeeecc
Q 008295 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQ-IGLDGIRMLDPNTSRTLRIYPL 326 (571)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq-~Gadg~~~lD~~gnn~LhiApL 326 (571)
.+|++.|+++|+++|.+|..|+||||+|++.|+.++++.|++ .|++ ++..|..|.|+||+|..
T Consensus 199 ~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~ 262 (285)
T 1wdy_A 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVE 262 (285)
T ss_dssp HHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHH
Confidence 667777777777777777777777777777777777777776 6676 66677777777777643
No 118
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=98.60 E-value=2.8e-09 Score=106.43 Aligned_cols=101 Identities=14% Similarity=0.056 Sum_probs=77.0
Q ss_pred cCCCCCCCccccccc-----------cCCcccCCCCcCCC-------CccCCCchhHhhhcccCCcccccccccccceEE
Q 008295 227 RGTVPKSSNSTLFDD-----------YGRSISFPSAKDSR-------SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVK 288 (571)
Q Consensus 227 ~~~~~~~~~~a~~~~-----------~~~~~~~~~~~~~~-------~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLH 288 (571)
...|.|+||+|+..+ .|..|......... .+...+.+.||++||++||++|.+|..|+||||
T Consensus 165 ~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~ 244 (337)
T 4g8k_A 165 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 244 (337)
T ss_dssp TTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred cCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence 345678999998754 34333322211100 112233467999999999999999999999999
Q ss_pred EEeccCCchHHHHHHHc-CCCCCcccCCCCCceeeeecccc
Q 008295 289 LLAESGGQSTMDVLCQI-GLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 289 laa~~g~~~iv~vLlq~-Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
+|++.|+.+++..|++. |++ ++..|.+|.|+||+|....
T Consensus 245 ~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g 284 (337)
T 4g8k_A 245 LAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELK 284 (337)
T ss_dssp HHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTT
T ss_pred HHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcC
Confidence 99999999999999985 788 9999999999999996653
No 119
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.52 E-value=6.9e-09 Score=111.20 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=63.4
Q ss_pred CCCchhHhhhcccCCcccccc------cccccceEEEE---eccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008295 259 GSGSSKIVRAVPKVDTHQDVK------SGVQKFRVKLL---AESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (571)
Q Consensus 259 ~~g~~~iVr~Ll~agA~vn~k------d~~~kTpLHla---a~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe~ 328 (571)
..|+.++|+.||..||++|.+ |..|.|+||+| +..|+.++|++|+++|+| +++.|.+|+|+||+|....
T Consensus 141 ~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~~g~TpLh~A~~~g 218 (497)
T 3lvq_E 141 CNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTALHYAALYN 218 (497)
T ss_dssp HHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCSSSCCHHHHHTTTT
T ss_pred hccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcC
Confidence 344599999999999999988 88999999999 669999999999999999 9999999999999998774
No 120
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=98.52 E-value=5.7e-09 Score=97.06 Aligned_cols=79 Identities=11% Similarity=0.002 Sum_probs=47.0
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCC-chHHHHHHHcC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGG-QSTMDVLCQIG 306 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~-~~iv~vLlq~G 306 (571)
..|.++||+|+..+. .+||+.|++.|++++.+|..|+|+||+|+..++ ..++++|++.|
T Consensus 107 ~~g~t~l~~A~~~~~--------------------~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~ 166 (240)
T 3eu9_A 107 GEGCSCIHLAAQFGH--------------------TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166 (240)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTT
T ss_pred CCCCCHHHHHHHcCH--------------------HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcC
Confidence 446677888765443 556666666666666666666666666664444 45566666666
Q ss_pred CCCCcccCC-CCCceeeeeccc
Q 008295 307 LDGIRMLDP-NTSRTLRIYPLE 327 (571)
Q Consensus 307 adg~~~lD~-~gnn~LhiApLe 327 (571)
++ ++..+. .|.++||+|...
T Consensus 167 ~~-~~~~~~~~g~t~L~~A~~~ 187 (240)
T 3eu9_A 167 VS-VNLGDKYHKNTALHWAVLA 187 (240)
T ss_dssp CC-TTCCCTTTCCCHHHHHHHH
T ss_pred CC-cchhhccCCCcHHHHHHHc
Confidence 66 555554 555666665544
No 121
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=98.49 E-value=1.4e-08 Score=101.22 Aligned_cols=61 Identities=7% Similarity=0.064 Sum_probs=57.0
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008295 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (571)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Ga 307 (571)
..|.|+||+|+..+. .+||++||++||++|.+|..|+||||+|++.|+.+++++|++.|+
T Consensus 203 ~~g~TpLh~A~~~g~--------------------~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 203 GKGSTALHYCCLTDN--------------------AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp TTCCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 467899999887665 899999999999999999999999999999999999999999999
Q ss_pred C
Q 008295 308 D 308 (571)
Q Consensus 308 d 308 (571)
+
T Consensus 263 ~ 263 (278)
T 1dcq_A 263 G 263 (278)
T ss_dssp T
T ss_pred C
Confidence 7
No 122
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=98.49 E-value=8.6e-09 Score=95.86 Aligned_cols=67 Identities=22% Similarity=0.229 Sum_probs=53.2
Q ss_pred cCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeec
Q 008295 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYP 325 (571)
Q Consensus 258 ~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiAp 325 (571)
+..|+.+||+.|++.|++++.+|..+.|+||+|++.|+.++++.|++.|++ ++..|..|.++||+|.
T Consensus 84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~ 150 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAA 150 (240)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHH
Confidence 334557888888888888888888888888888888888888888888888 7778888888888775
No 123
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=98.17 E-value=1.2e-07 Score=80.46 Aligned_cols=54 Identities=7% Similarity=0.132 Sum_probs=49.2
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHH
Q 008295 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVL 302 (571)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlaa~~g~~~iv~vL 302 (571)
.|.|+||+|+..+. .+||+.||++||++|.+|..|+|+||+|++.|+.+++++|
T Consensus 56 ~g~tpLh~A~~~~~--------------------~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 56 NGSTPLHLAARNGH--------------------LEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp TCCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence 46799999887664 8999999999999999999999999999999999988876
No 124
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=98.12 E-value=2e-08 Score=105.24 Aligned_cols=69 Identities=12% Similarity=0.210 Sum_probs=57.4
Q ss_pred ccCCCchhHhhhcccCCcc---cccccccccceEEEEeccCCchHHHHHHHcCCCCCcc--cCCCCCceeeeec-cc
Q 008295 257 SVGSGSSKIVRAVPKVDTH---QDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRM--LDPNTSRTLRIYP-LE 327 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~---vn~kd~~~kTpLHlaa~~g~~~iv~vLlq~Gadg~~~--lD~~gnn~LhiAp-Le 327 (571)
++..|+.+||+.|+++||+ +++++.. +||||+|++.|+.++|+.|+++|++ ++. .|..|.|+||+|. ..
T Consensus 135 Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~ 209 (376)
T 2aja_A 135 AAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGR 209 (376)
T ss_dssp HHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHHHHHHC
Confidence 4567789999999999976 3444444 9999999999999999999999998 766 8888999999997 55
No 125
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=97.83 E-value=1.8e-07 Score=98.01 Aligned_cols=63 Identities=6% Similarity=0.036 Sum_probs=55.8
Q ss_pred ccCCCchhHhhhcccCCccccc--ccccccceEEEEe-ccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008295 257 SVGSGSSKIVRAVPKVDTHQDV--KSGVQKFRVKLLA-ESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (571)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~--kd~~~kTpLHlaa-~~g~~~iv~vLlq~Gadg~~~lD~~gnn~LhiApLe 327 (571)
++..|+.+||+.||++||+++. +|..|+||||+|+ +.|+.++|+.|++.|++ +.++||+|...
T Consensus 170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--------~~taL~~Aa~~ 235 (376)
T 2aja_A 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--------LAYAEIHEFEY 235 (376)
T ss_dssp HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--------HHHHHHCTTTT
T ss_pred HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--------cchHHHHHHHC
Confidence 4567789999999999999998 8999999999999 99999999999998754 67888888554
No 126
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=97.64 E-value=1.4e-05 Score=83.74 Aligned_cols=42 Identities=19% Similarity=0.394 Sum_probs=38.6
Q ss_pred CCCCccCcCCccccccCccc-cCccccccccccCceeccCCCC
Q 008295 419 KDHWVPDEAVSKCTACGTDF-SAFVRKHHCRNCGDIFCDKCTH 460 (571)
Q Consensus 419 ~~~WvpD~~~~~C~~C~~~F-sl~~RKHHCR~CG~VfC~~CS~ 460 (571)
...|..+.....|+.|+..| ++++|+||||.||.+||..|+.
T Consensus 348 ~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 348 DFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp CEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGG
T ss_pred CCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhh
Confidence 45789999999999999999 4899999999999999999986
No 127
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=95.16 E-value=0.0071 Score=66.65 Aligned_cols=43 Identities=19% Similarity=0.402 Sum_probs=37.3
Q ss_pred CCCCccCcCCccccccCccc-cCccccccccccCceeccCCCCC
Q 008295 419 KDHWVPDEAVSKCTACGTDF-SAFVRKHHCRNCGDIFCDKCTHG 461 (571)
Q Consensus 419 ~~~WvpD~~~~~C~~C~~~F-sl~~RKHHCR~CG~VfC~~CS~~ 461 (571)
.-.|......+.|+.|+..| +++.+.|||+.||.++|.+|...
T Consensus 520 ~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 520 DFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR 563 (587)
T ss_dssp CEEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred ceeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence 34567777889999999987 88999999999999999999763
No 128
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=94.71 E-value=0.029 Score=51.26 Aligned_cols=54 Identities=24% Similarity=0.688 Sum_probs=43.0
Q ss_pred CCccccccCccccC-ccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHH
Q 008295 427 AVSKCTACGTDFSA-FVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl-~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l 484 (571)
....|..|.+.|++ .++.|-|..|..-||.+|.... . ....+..=+|..|.+.-
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~---~-~~~~~~~W~C~vC~k~r 108 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET---S-NNRPHPVWLCKICLEQR 108 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC---C-CSSSSCCEEEHHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCcc---C-CCCCccceechhhHHHH
Confidence 36799999999985 4889999999999999997532 1 12346778999999853
No 129
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=94.35 E-value=0.033 Score=47.31 Aligned_cols=37 Identities=24% Similarity=0.652 Sum_probs=28.5
Q ss_pred CCCccC-cCCccccccCccccCccccccccccCceeccCC
Q 008295 420 DHWVPD-EAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (571)
Q Consensus 420 ~~WvpD-~~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~C 458 (571)
..|+.. .....|..|+++.++++ ..+|| ||.+||..|
T Consensus 16 ~~~~~~k~~~~rC~~C~kkvgl~~-~f~Cr-Cg~~FC~~H 53 (85)
T 1wff_A 16 APLQTKKKIMKHCFLCGKKTGLAT-SFECR-CGNNFCASH 53 (85)
T ss_dssp CCCCCCCCCCCBCSSSCCBCSSSS-CEECT-TCCEECTTT
T ss_pred cccccCcccCccchhhCCeecccC-CeEcC-CCCEecccC
Confidence 345533 33689999999988863 48998 999999876
No 130
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=94.11 E-value=0.036 Score=45.93 Aligned_cols=28 Identities=29% Similarity=0.922 Sum_probs=24.7
Q ss_pred CccccccCccccCccccccccccCceeccCC
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~C 458 (571)
...|..|+++..++ ...|| ||.+||..|
T Consensus 25 ~~RC~~C~kkvgL~--~f~Cr-Cg~~FCs~H 52 (74)
T 1wfp_A 25 ATRCLSCNKKVGVT--GFKCR-CGSTFCGTH 52 (74)
T ss_dssp CCBCSSSCCBCTTT--CEECT-TSCEECTTT
T ss_pred CccchhhcCccccc--ceEec-cCCEecccc
Confidence 67899999998887 68995 999999876
No 131
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=93.96 E-value=0.028 Score=52.42 Aligned_cols=50 Identities=20% Similarity=0.638 Sum_probs=41.6
Q ss_pred CccccccCccccCc-cccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHH
Q 008295 428 VSKCTACGTDFSAF-VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~-~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l 484 (571)
...|..|.+.|+++ ++.+-|..|..-||.+|... +. .+..=+|..|.+.-
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---~~----~~~~W~C~vC~k~r 118 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---HP----EEQGWLCDPCHLAR 118 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---CS----SSSSCEEHHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccc---cC----CCCcEeeHHHHHHH
Confidence 57999999999966 89999999999999999842 22 24668999999863
No 132
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=93.91 E-value=0.035 Score=44.83 Aligned_cols=28 Identities=32% Similarity=0.855 Sum_probs=24.4
Q ss_pred CccccccCccccCccccccccccCceeccCC
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~C 458 (571)
...|..|+++..++ ...|| ||.+||..|
T Consensus 15 ~~rC~~C~kkvgl~--~f~Cr-Cg~~FC~~H 42 (64)
T 1wfh_A 15 PNRCTVCRKRVGLT--GFMCR-CGTTFCGSH 42 (64)
T ss_dssp CCCCTTTCCCCCTT--CEECS-SSCEECTTT
T ss_pred CCcChhhCCccCcc--CEEee-cCCEecccc
Confidence 56899999998887 68996 999999876
No 133
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=93.32 E-value=0.077 Score=43.95 Aligned_cols=28 Identities=29% Similarity=0.861 Sum_probs=24.3
Q ss_pred CccccccCccccCccccccccccCceeccCC
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~C 458 (571)
...|..|+++..++ ...|| ||.+||..+
T Consensus 25 ~nRC~~CrKkvgL~--gf~Cr-Cg~~FCs~H 52 (74)
T 1wfl_A 25 KNRCFMCRKKVGLT--GFDCR-CGNLFCGLH 52 (74)
T ss_dssp TTBCSSSCCBCGGG--CEECT-TSCEECSSS
T ss_pred CCcChhhCCccccc--CeecC-CCCEechhc
Confidence 56899999998877 48999 999999876
No 134
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=93.18 E-value=0.053 Score=45.38 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=28.2
Q ss_pred CccccccccccccccccceeccCCCCCccccCCCCCccccccC
Q 008295 529 SGRRMREVACPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH 571 (571)
Q Consensus 529 s~~~~K~~~~p~~w~~~~v~Vp~~D~ev~~C~iCqq~F~~~~r 571 (571)
++..|.+......| || |.++..|.+|++.|+++.|
T Consensus 2 ~~~~~~~~~~~~~W------~p--d~~~~~C~~C~~~Fs~~~R 36 (84)
T 1z2q_A 2 PLGSMGEKQSKGYW------QE--DEDAPACNGCGCVFTTTVR 36 (84)
T ss_dssp CCTTCCTTCCCSCC------CC--TTTCCBCTTTCCBCCTTSC
T ss_pred CcccccccCCCCcc------cc--CCCCCCCcCcCCccccchh
Confidence 34566667777788 44 9999999999999999876
No 135
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=92.25 E-value=0.089 Score=42.45 Aligned_cols=28 Identities=25% Similarity=0.876 Sum_probs=24.1
Q ss_pred CccccccCccccCccccccccccCceeccCC
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~C 458 (571)
...|..|+++..++ ...| .||.+||..|
T Consensus 15 ~~rC~~C~kkvgl~--~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM--GFKC-KCGSTFCGSH 42 (64)
T ss_dssp SCSCTTTCCCCTTS--CEEC-TTSCEECSSS
T ss_pred CCcChhhCCccccc--CeEe-ecCCEecccC
Confidence 46899999998877 6899 5999999876
No 136
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.14 E-value=0.11 Score=42.38 Aligned_cols=30 Identities=27% Similarity=0.698 Sum_probs=24.7
Q ss_pred CccccccCccccCccc-cccccccCceeccCC
Q 008295 428 VSKCTACGTDFSAFVR-KHHCRNCGDIFCDKC 458 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~R-KHHCR~CG~VfC~~C 458 (571)
...|..|+++..++.. -..| .||.+||..|
T Consensus 15 ~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQELGSC-RCGYVFCMLH 45 (67)
T ss_dssp TTBCSSSCCBCCHHHHHHHCC-SSSCCCCTTT
T ss_pred CCcchhhCCeecccccCceEe-cCCCEehhcc
Confidence 6789999999886643 3789 7999999876
No 137
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.60 E-value=0.4 Score=39.93 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.8
Q ss_pred CCCCCccccCCCCCccccccC
Q 008295 551 SSGSETIECGVCQHPFLVSAH 571 (571)
Q Consensus 551 ~~D~ev~~C~iCqq~F~~~~r 571 (571)
..|.++..|.+|++.|+++.|
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~R 29 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKK 29 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSC
T ss_pred ccCCCCCcCcCcCCccccchh
Confidence 459999999999999999876
No 138
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=83.67 E-value=0.47 Score=39.33 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=18.2
Q ss_pred CCCCCccccCCCCCccccccC
Q 008295 551 SSGSETIECGVCQHPFLVSAH 571 (571)
Q Consensus 551 ~~D~ev~~C~iCqq~F~~~~r 571 (571)
..|.++..|.+|++.|+++.|
T Consensus 14 ~~d~~~~~C~~C~~~Fs~~~R 34 (82)
T 2yw8_A 14 LKDDEATHCRQCEKEFSISRR 34 (82)
T ss_dssp -CCCCCCBCTTTCCBCBTTBC
T ss_pred ccCccCCcccCcCCcccCccc
Confidence 449999999999999998865
No 139
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=82.14 E-value=0.19 Score=39.88 Aligned_cols=31 Identities=23% Similarity=0.646 Sum_probs=25.1
Q ss_pred ccccccCccccCccccccccccCceeccCCCC
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTH 460 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~ 460 (571)
..|..|++.|.... +..|.+|+.+||.+|-.
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~ 46 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDV 46 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHH
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhH
Confidence 46999999996332 47899999999999953
No 140
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.50 E-value=0.35 Score=36.89 Aligned_cols=34 Identities=21% Similarity=0.520 Sum_probs=28.2
Q ss_pred CCCccCcCCccccccCccccCc--cccccccccCcee
Q 008295 420 DHWVPDEAVSKCTACGTDFSAF--VRKHHCRNCGDIF 454 (571)
Q Consensus 420 ~~WvpD~~~~~C~~C~~~Fsl~--~RKHHCR~CG~Vf 454 (571)
..|+.. ....|..|++.|+++ .|+|-|..||+++
T Consensus 5 ~~~~~~-~~~~CPrCn~~f~~~~sLr~HmkycCp~~v 40 (49)
T 2e72_A 5 SSGQDG-GRKICPRCNAQFRVTEALRGHMCYCCPEMV 40 (49)
T ss_dssp SSSCCS-SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred cccccC-CceeCCcccccccchHHHHhhhhhcCcchh
Confidence 356655 578999999999976 6899999999975
No 141
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.89 E-value=0.87 Score=37.86 Aligned_cols=47 Identities=19% Similarity=0.649 Sum_probs=37.9
Q ss_pred CccccccCccccCc-cccccccccCceeccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 428 VSKCTACGTDFSAF-VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~-~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
...|..|++.|+++ +|-.-|+.|-+-||.+|-.. .. ...=.|..|++
T Consensus 25 ~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~---~~-----~~~W~C~VC~k 72 (76)
T 2csz_A 25 DRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQ---ES-----NGTWRCKVCSG 72 (76)
T ss_dssp CCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEE---CS-----TTCEEEHHHHS
T ss_pred ccchhhhCccccccccCCCcCcccChhhccccccc---CC-----CCCEEEeeCch
Confidence 57899999999965 79999999999999999532 21 15678888875
No 142
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=78.75 E-value=1.1 Score=32.92 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=27.8
Q ss_pred CCccccccCccccCccccccccccCceeccCCCCCcE
Q 008295 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i 463 (571)
+...|.+|...|....+......||.+||..|....+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 40 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEML 40 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHH
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHH
Confidence 3568999999886544555667799999999986543
No 143
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=77.82 E-value=0.67 Score=39.81 Aligned_cols=47 Identities=19% Similarity=0.499 Sum_probs=31.6
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVT 485 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l~ 485 (571)
...|.+|...|..-.. -.||++||..|....+. .....|-.|...+.
T Consensus 15 ~~~C~iC~~~~~~p~~----~~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVEPVT----LPCNHTLCKPCFQSTVE-------KASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSSCEE----CTTSCEECHHHHCCCCC-------TTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCceeE----cCCCCHHhHHHHHHHHh-------HCcCCCCCCCcccC
Confidence 3579999887763322 27999999999875432 11257888876543
No 144
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=76.37 E-value=1.5 Score=32.31 Aligned_cols=35 Identities=17% Similarity=0.383 Sum_probs=25.5
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCc
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~ 462 (571)
...|.+|...|.....-.....||.+||..|....
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 39 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMW 39 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHT
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHH
Confidence 46899999888764433334469999999997643
No 145
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=75.21 E-value=1.3 Score=37.31 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.4
Q ss_pred CCCCCccccCCCCCccccccC
Q 008295 551 SSGSETIECGVCQHPFLVSAH 571 (571)
Q Consensus 551 ~~D~ev~~C~iCqq~F~~~~r 571 (571)
..|.++..|.+|++.|+++.|
T Consensus 15 ~~d~~~~~C~~C~~~F~~~~R 35 (90)
T 3t7l_A 15 VPDSEAPNCMNCQVKFTFTKR 35 (90)
T ss_dssp CCGGGCCBCTTTCCBCCSSSC
T ss_pred cccccCCcCcCCCCcccchhh
Confidence 449999999999999998765
No 146
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=71.20 E-value=2.6 Score=34.37 Aligned_cols=30 Identities=23% Similarity=0.623 Sum_probs=22.9
Q ss_pred CccccccCccccCccc-cccccccCc-eeccC
Q 008295 428 VSKCTACGTDFSAFVR-KHHCRNCGD-IFCDK 457 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~R-KHHCR~CG~-VfC~~ 457 (571)
.-.|..|+..|.+..+ ..+|+.||. |+-.+
T Consensus 28 ~Y~C~~CG~~~e~~~~d~irCp~CG~RILyK~ 59 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAVRCKDCGHRILLKA 59 (70)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCCCCCBCC
T ss_pred EEECCCCCCcceeCCCCCccCCCCCceEeEec
Confidence 4579999999987633 578999998 65443
No 147
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.62 E-value=1.6 Score=34.93 Aligned_cols=28 Identities=32% Similarity=0.771 Sum_probs=21.0
Q ss_pred Cccccc--cCccccCccccccccccCceeccCC
Q 008295 428 VSKCTA--CGTDFSAFVRKHHCRNCGDIFCDKC 458 (571)
Q Consensus 428 ~~~C~~--C~~~Fsl~~RKHHCR~CG~VfC~~C 458 (571)
...|.. |++. .++ ..+|+.||.+||.++
T Consensus 12 ~~~Cs~~~Ck~~-~ll--~f~C~~C~~~FC~~H 41 (63)
T 1x4v_A 12 TNKCERAGCRQR-EMM--KLTCERCSRNFCIKH 41 (63)
T ss_dssp CCCCCSTTCCCC-CSS--CCBCSSSCCBCCHHH
T ss_pred CCCCCccCCCCC-Ccc--ceECCCCCcccCccc
Confidence 457886 9876 333 469999999999754
No 148
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.38 E-value=1.8 Score=34.73 Aligned_cols=50 Identities=22% Similarity=0.487 Sum_probs=33.6
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
...|.+|...|....+.-.--.||++||..|....+.-. .....|-.|..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~Cr~ 64 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-----INGVRCPFCSK 64 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-----SSCBCCTTTCC
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-----CCCcCCCCCCC
Confidence 457999999887654433334799999999987554321 12456777764
No 149
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=70.04 E-value=3.4 Score=31.10 Aligned_cols=31 Identities=16% Similarity=0.481 Sum_probs=23.0
Q ss_pred CCccccccCccccCccccccccccCceeccCCCCC
Q 008295 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHG 461 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~ 461 (571)
+...|.+|...|..-. --.||+.||..|...
T Consensus 5 ~~~~C~IC~~~~~~p~----~l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPK----LLPCLHTLCSGCLEA 35 (56)
T ss_dssp CCSSCSSSCSSCBCCS----CSTTSCCSBTTTCSS
T ss_pred cCCCceEeCCccCCeE----EcCCCCcccHHHHcc
Confidence 3567999988876432 246999999999764
No 150
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.88 E-value=1 Score=35.19 Aligned_cols=46 Identities=24% Similarity=0.410 Sum_probs=30.1
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
...|.+|...|..-.. -.||++||..|....+.. ....+.|-.|..
T Consensus 20 ~~~C~IC~~~~~~~~~----~~CgH~fC~~Ci~~~~~~-----~~~~~~CP~Cr~ 65 (73)
T 2ysl_A 20 EVICPICLDILQKPVT----IDCGHNFCLKCITQIGET-----SCGFFKCPLCKT 65 (73)
T ss_dssp CCBCTTTCSBCSSEEE----CTTCCEEEHHHHHHHCSS-----SCSCCCCSSSCC
T ss_pred CCEeccCCcccCCeEE----cCCCChhhHHHHHHHHHc-----CCCCCCCCCCCC
Confidence 4689999987764222 279999999998755421 122356666654
No 151
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=69.64 E-value=3.1 Score=34.54 Aligned_cols=33 Identities=24% Similarity=0.646 Sum_probs=23.9
Q ss_pred CccccccCccccC--ccccccccccCceeccCCCC
Q 008295 428 VSKCTACGTDFSA--FVRKHHCRNCGDIFCDKCTH 460 (571)
Q Consensus 428 ~~~C~~C~~~Fsl--~~RKHHCR~CG~VfC~~CS~ 460 (571)
..-|..|+..|.. ..++..|..||..||-.|-.
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred EeECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 3346677765532 24578999999999999964
No 152
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=67.38 E-value=2.8 Score=34.67 Aligned_cols=29 Identities=24% Similarity=0.674 Sum_probs=22.1
Q ss_pred Cccccc--cCccccCccccccccccCceeccCCC
Q 008295 428 VSKCTA--CGTDFSAFVRKHHCRNCGDIFCDKCT 459 (571)
Q Consensus 428 ~~~C~~--C~~~Fsl~~RKHHCR~CG~VfC~~CS 459 (571)
...|.. |++. .++ -..|+.||.+||.++-
T Consensus 14 g~~Cs~~~C~~~-dfl--pf~C~~C~~~FC~~HR 44 (75)
T 1wys_A 14 GQHCQVQHCRQR-DFL--PFVCDGCSGIFCLEHR 44 (75)
T ss_dssp CCCCSCTTTCCC-SCC--CEECTTTCCEECSTTC
T ss_pred CCCcCcccCCCc-cce--eeECcccCcCcCcccC
Confidence 457886 9876 333 6789999999998764
No 153
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.70 E-value=3.7 Score=31.08 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=23.8
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcE
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i 463 (571)
...|.+|...|..-.. -.||++||..|....+
T Consensus 20 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 20 EVICPICLDILQKPVT----IDCGHNFCLKCITQIG 51 (63)
T ss_dssp CCBCTTTCSBCSSCEE----CTTSSEECHHHHHHHH
T ss_pred CCCCCcCCchhCCeEE----eCCCCcchHHHHHHHH
Confidence 4689999887764322 2799999999986554
No 154
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.09 E-value=3 Score=33.01 Aligned_cols=50 Identities=18% Similarity=0.435 Sum_probs=30.8
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
...|.+|...|..-.. -.||++||..|....+..... ......|-.|...
T Consensus 19 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~~~--~~~~~~CP~Cr~~ 68 (85)
T 2ecv_A 19 EVTCPICLELLTQPLS----LDCGHSFCQACLTANHKKSML--DKGESSCPVCRIS 68 (85)
T ss_dssp CCCCTTTCSCCSSCBC----CSSSCCBCTTHHHHHHHHHHH--TTSCCCCTTTCCS
T ss_pred CCCCCCCCcccCCcee----CCCCCHHHHHHHHHHHHHhhc--CCCCCcCCCCCCc
Confidence 4589999988764322 269999999998654322100 0124567777653
No 155
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=64.75 E-value=2.1 Score=33.69 Aligned_cols=51 Identities=16% Similarity=0.357 Sum_probs=32.8
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
...|.+|...|..-.. -.||++||..|....+..... .......|-.|...
T Consensus 12 ~~~C~IC~~~~~~p~~----l~CgH~fC~~Ci~~~~~~~~~-~~~~~~~CP~Cr~~ 62 (79)
T 2egp_A 12 EVTCPICLELLTEPLS----LDCGHSLCRACITVSNKEAVT-SMGGKSSCPVCGIS 62 (79)
T ss_dssp CCEETTTTEECSSCCC----CSSSCCCCHHHHSCCCCCCSS-SCCCCCCCSSSCCC
T ss_pred CCCCcCCCcccCCeeE----CCCCCHHHHHHHHHHHHhccc-CCCCCCcCCCCCCc
Confidence 4579999988764322 269999999998765432111 11234677777654
No 156
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=64.73 E-value=2.3 Score=38.01 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=18.5
Q ss_pred CCCCCccccCCCCCccccccC
Q 008295 551 SSGSETIECGVCQHPFLVSAH 571 (571)
Q Consensus 551 ~~D~ev~~C~iCqq~F~~~~r 571 (571)
..|.++..|.+|+..|+++.|
T Consensus 64 ~~d~~~~~C~~C~~~Fs~~~R 84 (125)
T 1joc_A 64 AEDNEVQNCMACGKGFSVTVR 84 (125)
T ss_dssp CCGGGCCBCTTTCCBCCSSSC
T ss_pred ccCCCCCCCcCcCCccccccc
Confidence 449999999999999998765
No 157
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=64.72 E-value=6.9 Score=31.13 Aligned_cols=51 Identities=29% Similarity=0.766 Sum_probs=38.2
Q ss_pred CCccccccC-ccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 427 AVSKCTACG-TDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 427 ~~~~C~~C~-~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
+...|.+|. ++|---. -|.|-.|-.-||.+|.. ++.|. +.+-.-||+.|.+
T Consensus 8 d~~~C~iC~KTKFADG~-Gh~C~yCk~r~CaRCGg-~v~lr---~~k~~WvC~lC~k 59 (62)
T 2a20_A 8 DAPTCGICHKTKFADGC-GHNCSYCQTKFCARCGG-RVSLR---SNKVMWVCNLCRK 59 (62)
T ss_dssp CCCCCSSSSCSCCCSSC-CEEBTTTCCEECTTSEE-EEESS---TTCEEEEEHHHHH
T ss_pred CcchhhhhccceeccCC-CccccccCCeeecccCC-Eeeec---CCeEEEEehhhhh
Confidence 367899997 5565433 48999999999999975 44553 3567789999976
No 158
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=63.46 E-value=5.1 Score=31.41 Aligned_cols=34 Identities=26% Similarity=0.570 Sum_probs=26.6
Q ss_pred CccccccCccccCccc--cccccc--cCceeccCCCCC
Q 008295 428 VSKCTACGTDFSAFVR--KHHCRN--CGDIFCDKCTHG 461 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~R--KHHCR~--CG~VfC~~CS~~ 461 (571)
.+.|..|+.......+ +..|+. ||..||..|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~ 43 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGP 43 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSC
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCC
Confidence 5789999887665433 567998 999999999753
No 159
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=63.44 E-value=3 Score=32.11 Aligned_cols=26 Identities=31% Similarity=0.821 Sum_probs=17.6
Q ss_pred cccccCccccCc------------cccccccccCceec
Q 008295 430 KCTACGTDFSAF------------VRKHHCRNCGDIFC 455 (571)
Q Consensus 430 ~C~~C~~~Fsl~------------~RKHHCR~CG~VfC 455 (571)
.|..|++.|... .|.+.|..||+.|-
T Consensus 6 ~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp ECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred cCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcC
Confidence 688888888642 24566777777763
No 160
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=62.72 E-value=2.1 Score=35.98 Aligned_cols=46 Identities=20% Similarity=0.582 Sum_probs=32.3
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHH
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l 484 (571)
..|.+|...|. .-..|-.||++||..|....+... ...|-.|...+
T Consensus 23 ~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~-------~~~CP~Cr~~~ 68 (100)
T 3lrq_A 23 FRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQ-------RAQCPHCRAPL 68 (100)
T ss_dssp TBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHT-------CSBCTTTCCBC
T ss_pred CCCccCCcccc---CccccCCCCChhhHHHHHHHHHHC-------cCCCCCCCCcC
Confidence 47999988764 345668999999999987554321 15788887543
No 161
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.25 E-value=3 Score=32.59 Aligned_cols=46 Identities=26% Similarity=0.554 Sum_probs=30.1
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
...|.+|...|..-...... .||++||..|....+.. .+.|-.|..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~--------~~~CP~Cr~ 60 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEV--------RKVCPLCNM 60 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHH--------CSBCTTTCC
T ss_pred CCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHc--------CCcCCCcCc
Confidence 45899999888644332222 59999999998654321 136777754
No 162
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=62.18 E-value=5.6 Score=31.34 Aligned_cols=47 Identities=19% Similarity=0.443 Sum_probs=30.6
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
...|.+|...|..-.. ..--.||++||..|....+. ..+.|-.|...
T Consensus 15 ~~~C~IC~~~~~~~~~-~~~~~C~H~fc~~Ci~~~~~--------~~~~CP~Cr~~ 61 (78)
T 2ect_A 15 GLECPVCKEDYALGES-VRQLPCNHLFHDSCIVPWLE--------QHDSCPVCRKS 61 (78)
T ss_dssp SCCCTTTTSCCCTTSC-EEECTTSCEEETTTTHHHHT--------TTCSCTTTCCC
T ss_pred CCCCeeCCccccCCCC-EEEeCCCCeecHHHHHHHHH--------cCCcCcCcCCc
Confidence 5689999988864321 11125999999999875532 11467777653
No 163
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.41 E-value=2.8 Score=32.75 Aligned_cols=44 Identities=27% Similarity=0.566 Sum_probs=28.8
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
...|.+|...|..-.. -.||++||..|....+. ..+.|-.|...
T Consensus 15 ~~~C~IC~~~~~~~~~----~~CgH~fC~~Ci~~~~~--------~~~~CP~Cr~~ 58 (71)
T 2d8t_A 15 VPECAICLQTCVHPVS----LPCKHVFCYLCVKGASW--------LGKRCALCRQE 58 (71)
T ss_dssp CCBCSSSSSBCSSEEE----ETTTEEEEHHHHHHCTT--------CSSBCSSSCCB
T ss_pred CCCCccCCcccCCCEE----ccCCCHHHHHHHHHHHH--------CCCcCcCcCch
Confidence 4579999887754322 26999999999764321 11567777653
No 164
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=59.29 E-value=1.6 Score=37.21 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=33.9
Q ss_pred ccccccCccccCcc--------------ccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHH
Q 008295 429 SKCTACGTDFSAFV--------------RKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~--------------RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l 484 (571)
..|.+|...|..-. .....-.||++||..|....+... ..+....|-.|...+
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~---~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG---NKDGSLQCPSCKTIY 92 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHT---CCSSCCBCTTTCCBS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcc---cCCCCCcCCCCCCcc
Confidence 48999998885422 111245699999999987654221 112346788887544
No 165
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=59.28 E-value=1.3 Score=38.57 Aligned_cols=44 Identities=18% Similarity=0.453 Sum_probs=30.0
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
..|.+|...|..-.. -.||+.||..|....+. ...+.|-.|...
T Consensus 53 ~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~ 96 (124)
T 3fl2_A 53 FQCICCQELVFRPIT----TVCQHNVCKDCLDRSFR-------AQVFSCPACRYD 96 (124)
T ss_dssp TBCTTTSSBCSSEEE----CTTSCEEEHHHHHHHHH-------TTCCBCTTTCCB
T ss_pred CCCCcCChHHcCcEE----eeCCCcccHHHHHHHHh-------HCcCCCCCCCcc
Confidence 479999887763222 27999999999865442 123578888753
No 166
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.06 E-value=2.2 Score=32.54 Aligned_cols=37 Identities=24% Similarity=0.705 Sum_probs=26.4
Q ss_pred CCccccccCccccCc---cccccccccCceeccCCCCCcE
Q 008295 427 AVSKCTACGTDFSAF---VRKHHCRNCGDIFCDKCTHGRI 463 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl~---~RKHHCR~CG~VfC~~CS~~~i 463 (571)
+...|.+|...|... .+...-..||++||..|....+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 53 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 53 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHH
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHH
Confidence 356899999887643 2233556899999999986543
No 167
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=58.78 E-value=6.8 Score=29.83 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=10.5
Q ss_pred CccccccCccccC
Q 008295 428 VSKCTACGTDFSA 440 (571)
Q Consensus 428 ~~~C~~C~~~Fsl 440 (571)
.-.|..|++.|..
T Consensus 17 ~~~C~~C~k~f~~ 29 (74)
T 2lce_A 17 PYKCDRCQASFRY 29 (74)
T ss_dssp SBCCTTSSCCBSC
T ss_pred CeECCCCCceeCC
Confidence 4579999999974
No 168
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.42 E-value=3.9 Score=30.13 Aligned_cols=31 Identities=26% Similarity=0.610 Sum_probs=23.3
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCc
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~ 462 (571)
...|.+|...|..-.. -.||++||..|....
T Consensus 15 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVI----IECGHNFCKACITRW 45 (58)
T ss_dssp CCBCSSSCCBCSSCCC----CSSCCCCCHHHHHHH
T ss_pred CCCCccCCcccCccEe----CCCCCccCHHHHHHH
Confidence 4589999988764322 369999999997654
No 169
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.81 E-value=4 Score=32.13 Aligned_cols=36 Identities=22% Similarity=0.455 Sum_probs=26.0
Q ss_pred CCccccccCccccCccccccccccCceeccCCCCCcE
Q 008295 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i 463 (571)
+...|.+|...|..-. ....-.||++||..|....+
T Consensus 22 ~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~ 57 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWL 57 (75)
T ss_dssp SCCEETTTTEECCBTC-EEEEETTTEEEETTHHHHHH
T ss_pred CCCCCeECCcccCCCC-eEEEECCCCHhHHHHHHHHH
Confidence 4568999998876432 33444699999999987553
No 170
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.25 E-value=4.8 Score=32.57 Aligned_cols=43 Identities=16% Similarity=0.324 Sum_probs=29.8
Q ss_pred CCCccCcCCccccccCccccCc---------cc--cccccccCceeccCCCCCc
Q 008295 420 DHWVPDEAVSKCTACGTDFSAF---------VR--KHHCRNCGDIFCDKCTHGR 462 (571)
Q Consensus 420 ~~WvpD~~~~~C~~C~~~Fsl~---------~R--KHHCR~CG~VfC~~CS~~~ 462 (571)
..|.-|.+...|.+|...|... .. ...--.||.+||..|....
T Consensus 7 ~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~W 60 (81)
T 2ecl_A 7 GMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLW 60 (81)
T ss_dssp CCCCCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHH
T ss_pred EEeeecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHH
Confidence 4577677788899999988542 11 1122259999999997654
No 171
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=57.00 E-value=4.5 Score=33.32 Aligned_cols=13 Identities=31% Similarity=0.951 Sum_probs=10.2
Q ss_pred CccccccCccccC
Q 008295 428 VSKCTACGTDFSA 440 (571)
Q Consensus 428 ~~~C~~C~~~Fsl 440 (571)
.-.|..|++.|..
T Consensus 28 ~h~C~~Cgk~F~~ 40 (85)
T 2lv2_A 28 CHLCPVCGESFAS 40 (85)
T ss_dssp TEECTTSCCEESS
T ss_pred CEECCCCCCCcCc
Confidence 4578899998874
No 172
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=56.29 E-value=2.6 Score=32.52 Aligned_cols=36 Identities=25% Similarity=0.720 Sum_probs=26.2
Q ss_pred CccccccCccccCc---cccccccccCceeccCCCCCcE
Q 008295 428 VSKCTACGTDFSAF---VRKHHCRNCGDIFCDKCTHGRI 463 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~---~RKHHCR~CG~VfC~~CS~~~i 463 (571)
...|.+|...|..- .+......||++||..|....+
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 48 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 48 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHH
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHH
Confidence 56899999887643 2333566899999999986543
No 173
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=55.72 E-value=6.3 Score=28.15 Aligned_cols=12 Identities=33% Similarity=0.927 Sum_probs=9.0
Q ss_pred ccccccCccccC
Q 008295 429 SKCTACGTDFSA 440 (571)
Q Consensus 429 ~~C~~C~~~Fsl 440 (571)
-.|..|++.|..
T Consensus 5 ~~C~~C~~~f~~ 16 (57)
T 3uk3_C 5 RECSYCGKFFRS 16 (57)
T ss_dssp CBCTTTCCBCSC
T ss_pred ccCCCCcchhCC
Confidence 368888888864
No 174
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.15 E-value=3.7 Score=31.60 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=19.5
Q ss_pred CccccccCccccCccccccccccCce
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDI 453 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~V 453 (571)
...|..|+.. +-.+..+||+||..
T Consensus 14 k~iCpkC~a~--~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGAT--NPWGAKKCRKCGYK 37 (51)
T ss_dssp EEECTTTCCE--ECTTCSSCSSSSSC
T ss_pred CccCCCCCCc--CCCCceecCCCCCc
Confidence 4689999886 56778899999975
No 175
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=55.04 E-value=5.8 Score=31.93 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=15.8
Q ss_pred ccccccccccceeccCCCCCccccCCCCCccccccC
Q 008295 536 VACPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH 571 (571)
Q Consensus 536 ~~~p~~w~~~~v~Vp~~D~ev~~C~iCqq~F~~~~r 571 (571)
.+.+..|+ + |. .|.+|++.|+++.|
T Consensus 2 ~~~~p~W~------~--~~---~C~~C~~~F~~~~R 26 (73)
T 1vfy_A 2 SKTPADWI------D--SD---ACMICSKKFSLLNR 26 (73)
T ss_dssp -----CCC------C--CS---BCTTTCCBCBTTBC
T ss_pred CCCCCcCc------c--CC---cccCCCCccCCccc
Confidence 34567783 3 43 89999999999866
No 176
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.30 E-value=4 Score=31.88 Aligned_cols=44 Identities=18% Similarity=0.492 Sum_probs=29.4
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
...|.+|...|.. ...-..||++||..|....+.. .+.|-.|..
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~ 58 (72)
T 2djb_A 15 YILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY--------SNRCPKCNI 58 (72)
T ss_dssp GGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH--------CSSCTTTCC
T ss_pred CCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc--------CCcCCCcCc
Confidence 4589999877653 2333579999999998655421 245666654
No 177
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=53.76 E-value=5.7 Score=30.53 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=24.5
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcE
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i 463 (571)
...|.+|...|.... ....-.||++||..|....+
T Consensus 14 ~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~ 48 (69)
T 2kiz_A 14 EEKCTICLSILEEGE-DVRRLPCMHLFHQVCVDQWL 48 (69)
T ss_dssp CCSBTTTTBCCCSSS-CEEECTTSCEEEHHHHHHHH
T ss_pred CCCCeeCCccccCCC-cEEEeCCCCHHHHHHHHHHH
Confidence 568999988775322 23344699999999986543
No 178
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=53.20 E-value=4.6 Score=34.74 Aligned_cols=43 Identities=23% Similarity=0.619 Sum_probs=28.7
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
...|.+|...|..- .--..||++||..|....+. ..|-.|...
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~----------~~CP~Cr~~ 64 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG----------TGCPVCYTP 64 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT----------TBCSSSCCB
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc----------CCCcCCCCc
Confidence 34799998776422 22227999999999865432 567777653
No 179
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=52.45 E-value=7.7 Score=27.65 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=8.1
Q ss_pred cccccCccccC
Q 008295 430 KCTACGTDFSA 440 (571)
Q Consensus 430 ~C~~C~~~Fsl 440 (571)
.|..|++.|..
T Consensus 3 ~C~~C~~~f~~ 13 (57)
T 1bbo_A 3 ICEECGIRXKK 13 (57)
T ss_dssp BCTTTCCBCSS
T ss_pred cCCCCcCcCCC
Confidence 57788888764
No 180
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=52.33 E-value=6.3 Score=31.03 Aligned_cols=46 Identities=20% Similarity=0.525 Sum_probs=29.6
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
...|.+|...|..- ..-..||++||..|....+... ..+.|-.|..
T Consensus 15 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~------~~~~CP~Cr~ 60 (74)
T 2yur_A 15 ELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLES------DEHTCPTCHQ 60 (74)
T ss_dssp GGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHS------SSSCCSSSCC
T ss_pred CCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhc------CCCcCCCCCC
Confidence 45799998777532 2233499999999986554321 1346777754
No 181
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.18 E-value=4.5 Score=33.95 Aligned_cols=46 Identities=22% Similarity=0.507 Sum_probs=29.7
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
..|.+|...|..-.. -.||++||..|....+... .....|-.|...
T Consensus 22 ~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~Cr~~ 67 (112)
T 1jm7_A 22 LECPICLELIKEPVS----TKCDHIFCKFCMLKLLNQK-----KGPSQCPLCKND 67 (112)
T ss_dssp TSCSSSCCCCSSCCB----CTTSCCCCSHHHHHHHHSS-----SSSCCCTTTSCC
T ss_pred CCCcccChhhcCeEE----CCCCCHHHHHHHHHHHHhC-----CCCCCCcCCCCc
Confidence 379999887753222 3799999999986543211 122567777653
No 182
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=52.08 E-value=2.4 Score=35.59 Aligned_cols=54 Identities=19% Similarity=0.423 Sum_probs=31.6
Q ss_pred ccccccCccccCccccccccccCce-----eccCCCCCcEeccCCCCCCceeeccccHHHH
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGDI-----FCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~V-----fC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l 484 (571)
..|..|+.......+.+||..|++- ||-+|-.....|..=+ ...-.|..|.+.+
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~Le~lkACG--A~~yFC~~C~~Li 61 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPLQVLKACG--AVDYFCQNGHGLI 61 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSCCCEEEETT--EEEECCTTTTCCC
T ss_pred CCCCCCCCccccCCCceECccccccCCCcccCcchhhHHHHHHhcC--CcCeeeccCCCEe
Confidence 3677777776666677778888764 6777755433332211 1145666666543
No 183
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=51.84 E-value=6.3 Score=30.09 Aligned_cols=45 Identities=24% Similarity=0.521 Sum_probs=29.8
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
...|.+|...|..- .....||++||..|....+.. ...|-.|...
T Consensus 5 ~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~~--------~~~CP~Cr~~ 49 (68)
T 1chc_A 5 AERCPICLEDPSNY---SMALPCLHAFCYVCITRWIRQ--------NPTCPLCKVP 49 (68)
T ss_dssp CCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHHH--------SCSTTTTCCC
T ss_pred CCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHhC--------cCcCcCCChh
Confidence 45899998877532 234569999999998654311 1467777543
No 184
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=51.35 E-value=16 Score=27.90 Aligned_cols=13 Identities=46% Similarity=0.971 Sum_probs=10.5
Q ss_pred CccccccCccccC
Q 008295 428 VSKCTACGTDFSA 440 (571)
Q Consensus 428 ~~~C~~C~~~Fsl 440 (571)
.-.|..|++.|..
T Consensus 18 ~~~C~~C~~~f~~ 30 (77)
T 2cot_A 18 RYKCDECGKSFSH 30 (77)
T ss_dssp SSBCSSSCCBCSC
T ss_pred CEECCCCCcccCC
Confidence 5679999999874
No 185
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=51.13 E-value=4.2 Score=37.05 Aligned_cols=47 Identities=17% Similarity=0.453 Sum_probs=31.8
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l 484 (571)
...|.+|...|.. -..+..||++||..|....+.. ....|-.|...+
T Consensus 54 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 54 ELMCPICLDMLKN---TMTTKECLHRFCADCIITALRS-------GNKECPTCRKKL 100 (165)
T ss_dssp HHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHT-------TCCBCTTTCCBC
T ss_pred CCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHh-------CcCCCCCCCCcC
Confidence 4589999877653 3344589999999998755421 135677776543
No 186
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=50.79 E-value=15 Score=30.12 Aligned_cols=33 Identities=33% Similarity=0.805 Sum_probs=24.0
Q ss_pred Cccccc--cCccccC--cccccccc-----ccCceeccCCCC
Q 008295 428 VSKCTA--CGTDFSA--FVRKHHCR-----NCGDIFCDKCTH 460 (571)
Q Consensus 428 ~~~C~~--C~~~Fsl--~~RKHHCR-----~CG~VfC~~CS~ 460 (571)
..-|.. |+..... -.++..|. .||..||..|..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~ 66 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKE 66 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTE
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCc
Confidence 556664 7654432 35678997 999999999964
No 187
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=50.48 E-value=8.2 Score=27.91 Aligned_cols=11 Identities=27% Similarity=0.824 Sum_probs=8.0
Q ss_pred cccccCccccC
Q 008295 430 KCTACGTDFSA 440 (571)
Q Consensus 430 ~C~~C~~~Fsl 440 (571)
.|..|++.|..
T Consensus 4 ~C~~C~~~f~~ 14 (60)
T 2adr_A 4 VCEVCTRAFAR 14 (60)
T ss_dssp CCTTTCCCBSC
T ss_pred cCCCCccccCC
Confidence 57788887763
No 188
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.19 E-value=6.2 Score=30.01 Aligned_cols=27 Identities=26% Similarity=0.602 Sum_probs=18.2
Q ss_pred CccccccCcc-cc-CccccccccccCcee
Q 008295 428 VSKCTACGTD-FS-AFVRKHHCRNCGDIF 454 (571)
Q Consensus 428 ~~~C~~C~~~-Fs-l~~RKHHCR~CG~Vf 454 (571)
...|..|+.. |- .-..|++|.+||.++
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 5679999862 22 123478888888765
No 189
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=49.73 E-value=4.6 Score=36.03 Aligned_cols=30 Identities=20% Similarity=0.447 Sum_probs=21.2
Q ss_pred CccccccCc-ccc-CccccccccccCceeccC
Q 008295 428 VSKCTACGT-DFS-AFVRKHHCRNCGDIFCDK 457 (571)
Q Consensus 428 ~~~C~~C~~-~Fs-l~~RKHHCR~CG~VfC~~ 457 (571)
...|..|++ .+. .-....||+.||++|-.-
T Consensus 60 kytCPfCGk~~vKR~avGIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 60 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 91 (116)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred CCcCCCCCCceeEecCceeEECCCCCCEEECC
Confidence 458999987 221 224579999999998654
No 190
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.23 E-value=3.5 Score=33.73 Aligned_cols=12 Identities=17% Similarity=0.454 Sum_probs=9.8
Q ss_pred CccccccCcccc
Q 008295 428 VSKCTACGTDFS 439 (571)
Q Consensus 428 ~~~C~~C~~~Fs 439 (571)
.-.|..|++.|.
T Consensus 24 ~~~C~~C~k~f~ 35 (98)
T 2gqj_A 24 EAVCPTCNVVTR 35 (98)
T ss_dssp CCCCTTTCCCCS
T ss_pred CcCCCCCCCChh
Confidence 357999999997
No 191
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.11 E-value=5.8 Score=30.55 Aligned_cols=44 Identities=23% Similarity=0.523 Sum_probs=31.1
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l 484 (571)
...|.+|...|.. .--.||++||..|....+. ..+.|-.|...+
T Consensus 15 ~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~--------~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 15 EEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD--------RHRNCPICRLQM 58 (70)
T ss_dssp CCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC--------CCSSCHHHHHCT
T ss_pred CCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH--------CcCcCCCcCCcc
Confidence 4689999887765 3356999999999764322 246788887543
No 192
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=48.89 E-value=4 Score=30.54 Aligned_cols=36 Identities=25% Similarity=0.735 Sum_probs=25.6
Q ss_pred CccccccCccccCc---cccccccccCceeccCCCCCcE
Q 008295 428 VSKCTACGTDFSAF---VRKHHCRNCGDIFCDKCTHGRI 463 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~---~RKHHCR~CG~VfC~~CS~~~i 463 (571)
...|.+|...|... .+......||.+||..|....+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 41 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 41 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHH
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHH
Confidence 45799998887643 2333556899999999986543
No 193
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=48.62 E-value=4.6 Score=33.30 Aligned_cols=36 Identities=14% Similarity=0.261 Sum_probs=25.1
Q ss_pred CCccccccCccccCccccccccccCceeccCCCCCcE
Q 008295 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i 463 (571)
+...|.+|...|..... ...-.||++||..|...++
T Consensus 39 ~~~~C~IC~~~~~~~~~-~~~l~C~H~Fh~~Ci~~wl 74 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDV-ATELPCHHYFHKPCVSIWL 74 (91)
T ss_dssp SCSEETTTTEECCTTCE-EEEETTTEEEEHHHHHHHH
T ss_pred CCCCCcccChhhcCCCc-EEecCCCChHHHHHHHHHH
Confidence 35689999988865332 2223599999999976543
No 194
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.62 E-value=4.6 Score=30.93 Aligned_cols=32 Identities=25% Similarity=0.677 Sum_probs=23.9
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcE
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i 463 (571)
...|.+|...|..-.. -.||++||..|....+
T Consensus 15 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~ 46 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQ----TECGHRFCESCMAALL 46 (66)
T ss_dssp CEECTTTCCEESSCCC----CSSSCCCCHHHHHHHH
T ss_pred CCCCCCCChHhcCeeE----CCCCCHHHHHHHHHHH
Confidence 4579999887764332 4899999999986553
No 195
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=48.58 E-value=7.9 Score=29.12 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=8.3
Q ss_pred ccccccCccccC
Q 008295 429 SKCTACGTDFSA 440 (571)
Q Consensus 429 ~~C~~C~~~Fsl 440 (571)
-.|..|++.|..
T Consensus 10 ~~C~~C~k~f~~ 21 (70)
T 1x5w_A 10 EKCSECSYSCSS 21 (70)
T ss_dssp EECSSSSCEESS
T ss_pred eECCCCCcccCC
Confidence 467777777763
No 196
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.39 E-value=5.5 Score=31.38 Aligned_cols=50 Identities=20% Similarity=0.421 Sum_probs=31.5
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
...|.+|...|..-. . -.||++||..|....+.... .......|-.|...
T Consensus 19 ~~~C~IC~~~~~~p~---~-~~CgH~fC~~Ci~~~~~~~~--~~~~~~~CP~Cr~~ 68 (85)
T 2ecw_A 19 EVTCPICLELLKEPV---S-ADCNHSFCRACITLNYESNR--NTDGKGNCPVCRVP 68 (85)
T ss_dssp TTSCTTTCSCCSSCE---E-CTTSCCBCHHHHHHHHHHSB--CTTSCBCCTTTCCC
T ss_pred CCCCcCCChhhCcce---e-CCCCCHHHHHHHHHHHHhcc--CCCCCCCCCCCCCc
Confidence 458999988775432 2 35999999999865433211 11234677777653
No 197
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=47.28 E-value=4.7 Score=30.26 Aligned_cols=29 Identities=21% Similarity=0.572 Sum_probs=18.8
Q ss_pred CccccccCccccCc---------cccccccccCceecc
Q 008295 428 VSKCTACGTDFSAF---------VRKHHCRNCGDIFCD 456 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~---------~RKHHCR~CG~VfC~ 456 (571)
.-.|..|++.|... .+.+.|..||+.|-.
T Consensus 14 ~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEE 51 (62)
T ss_dssp EEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEE
T ss_pred CccCCCCCchhccHHHhHhhcCCCCCEECCCCCCcccc
Confidence 35799999988632 234567777776643
No 198
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=47.16 E-value=8.3 Score=29.22 Aligned_cols=13 Identities=38% Similarity=0.851 Sum_probs=9.3
Q ss_pred CccccccCccccC
Q 008295 428 VSKCTACGTDFSA 440 (571)
Q Consensus 428 ~~~C~~C~~~Fsl 440 (571)
.-.|..|++.|..
T Consensus 14 ~~~C~~C~k~f~~ 26 (72)
T 1x6e_A 14 PYGCVECGKAFSR 26 (72)
T ss_dssp CEECSSSCCEESS
T ss_pred CccCCCCCCccCC
Confidence 3468888888864
No 199
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.10 E-value=6.9 Score=31.14 Aligned_cols=43 Identities=23% Similarity=0.592 Sum_probs=29.5
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
...|.+|...|..-. --.||++||..|....+.. ...|-.|..
T Consensus 15 ~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~ 57 (81)
T 2csy_A 15 PFRCFICRQAFQNPV----VTKCRHYFCESCALEHFRA--------TPRCYICDQ 57 (81)
T ss_dssp CSBCSSSCSBCCSEE----ECTTSCEEEHHHHHHHHHH--------CSBCSSSCC
T ss_pred CCCCcCCCchhcCee----EccCCCHhHHHHHHHHHHC--------CCcCCCcCc
Confidence 457999988775422 2479999999998655321 346777754
No 200
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=46.56 E-value=8 Score=32.64 Aligned_cols=28 Identities=21% Similarity=0.517 Sum_probs=21.2
Q ss_pred Cccccc--cCccccCccccccccccCceeccCC
Q 008295 428 VSKCTA--CGTDFSAFVRKHHCRNCGDIFCDKC 458 (571)
Q Consensus 428 ~~~C~~--C~~~Fsl~~RKHHCR~CG~VfC~~C 458 (571)
...|.. |++. .++ -.+|+.||.+||.++
T Consensus 25 ~~~C~~~~Ck~~-~~l--~f~C~~C~~~FC~~H 54 (86)
T 1wfe_A 25 SYSCSFKGCTDV-ELV--AVICPYCEKNFCLRH 54 (86)
T ss_dssp CEECCSTTCCCE-ESS--CEECTTTCCEECGGG
T ss_pred CCCCCCcCCCCC-Ccc--ceECCCCCccccccc
Confidence 457887 9876 332 469999999999865
No 201
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=45.68 E-value=8.7 Score=27.67 Aligned_cols=12 Identities=42% Similarity=0.985 Sum_probs=9.0
Q ss_pred ccccccCccccC
Q 008295 429 SKCTACGTDFSA 440 (571)
Q Consensus 429 ~~C~~C~~~Fsl 440 (571)
-.|..|++.|..
T Consensus 13 ~~C~~C~k~f~~ 24 (54)
T 2eps_A 13 YICQSCGKGFSR 24 (54)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCcccCC
Confidence 468888888863
No 202
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.38 E-value=7.8 Score=29.73 Aligned_cols=12 Identities=25% Similarity=0.686 Sum_probs=8.8
Q ss_pred ccccccCccccC
Q 008295 429 SKCTACGTDFSA 440 (571)
Q Consensus 429 ~~C~~C~~~Fsl 440 (571)
-.|..|++.|..
T Consensus 8 ~~C~~C~k~f~~ 19 (78)
T 2d9h_A 8 LQCEICGFTCRQ 19 (78)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCCeeCC
Confidence 468888888864
No 203
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=45.19 E-value=5.9 Score=31.22 Aligned_cols=44 Identities=9% Similarity=0.156 Sum_probs=29.4
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
...|.+|...|..-. .-.||++||..|....+. ...+.|-.|..
T Consensus 8 ~~~C~IC~~~~~~Pv----~~~CgH~fc~~Ci~~~~~-------~~~~~CP~C~~ 51 (78)
T 1t1h_A 8 YFRCPISLELMKDPV----IVSTGQTYERSSIQKWLD-------AGHKTCPKSQE 51 (78)
T ss_dssp SSSCTTTSCCCSSEE----EETTTEEEEHHHHHHHHT-------TTCCBCTTTCC
T ss_pred cCCCCCccccccCCE----EcCCCCeecHHHHHHHHH-------HCcCCCCCCcC
Confidence 457999988775322 237999999999865442 11356777764
No 204
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=44.74 E-value=5.2 Score=30.51 Aligned_cols=34 Identities=24% Similarity=0.576 Sum_probs=23.4
Q ss_pred ccccccCc-cccCccccccccccCceeccCCCCCc
Q 008295 429 SKCTACGT-DFSAFVRKHHCRNCGDIFCDKCTHGR 462 (571)
Q Consensus 429 ~~C~~C~~-~Fsl~~RKHHCR~CG~VfC~~CS~~~ 462 (571)
..|.+|.. .|..-.++..=..||++||..|....
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~ 38 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLL 38 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHH
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHH
Confidence 47999987 66543332223479999999998644
No 205
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=44.43 E-value=6.7 Score=30.78 Aligned_cols=23 Identities=30% Similarity=0.728 Sum_probs=17.8
Q ss_pred CccccccCccccCccccccccccCc
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGD 452 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~ 452 (571)
...|+.|.... -.|-.+||+||.
T Consensus 19 k~ICrkC~ARn--p~~A~~CRKCg~ 41 (56)
T 2ayj_A 19 KKVCRKCGALN--PIRATKCRRCHS 41 (56)
T ss_dssp CEEETTTCCEE--CTTCSSCTTTCC
T ss_pred hhhhccccCcC--CcccccccCCCC
Confidence 56899998864 356789999983
No 206
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=44.35 E-value=6.6 Score=32.54 Aligned_cols=44 Identities=18% Similarity=0.499 Sum_probs=29.6
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
..|.+|...|.. -...-.||+.||..|....+. ....|-.|...
T Consensus 23 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~--------~~~~CP~Cr~~ 66 (99)
T 2y43_A 23 LRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLS--------YKTQCPTCCVT 66 (99)
T ss_dssp TBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHT--------TCCBCTTTCCB
T ss_pred CCcccCChhhCC---cCEECCCCCHhhHHHHHHHHH--------CCCCCCCCCCc
Confidence 479999887753 222347999999999865432 12467777653
No 207
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=44.28 E-value=7.5 Score=35.61 Aligned_cols=25 Identities=32% Similarity=0.801 Sum_probs=19.3
Q ss_pred ccccccCccccCccccccccccCce
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGDI 453 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~V 453 (571)
-.|..|++.|..+.....|-.||.-
T Consensus 133 y~C~~Cg~~~~~~~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 133 YVCIGCGRKFSTLPPGGVCPDCGSK 157 (165)
T ss_dssp EEESSSCCEESSCCGGGBCTTTCCB
T ss_pred EECCCCCCcccCCCCCCcCCCCCCc
Confidence 4899999999877555677777753
No 208
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=43.89 E-value=6.2 Score=33.11 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=23.1
Q ss_pred CccccccCc--cccCccccccccccCceeccCC
Q 008295 428 VSKCTACGT--DFSAFVRKHHCRNCGDIFCDKC 458 (571)
Q Consensus 428 ~~~C~~C~~--~Fsl~~RKHHCR~CG~VfC~~C 458 (571)
...|..|++ .|..-....+|..||..|..--
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~agga 59 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGS 59 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEECCS
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCEecCCE
Confidence 347999986 3445567899999999986643
No 209
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=42.64 E-value=11 Score=27.96 Aligned_cols=28 Identities=21% Similarity=0.595 Sum_probs=18.3
Q ss_pred CccccccCc-c--ccCccccccccccCceec
Q 008295 428 VSKCTACGT-D--FSAFVRKHHCRNCGDIFC 455 (571)
Q Consensus 428 ~~~C~~C~~-~--Fsl~~RKHHCR~CG~VfC 455 (571)
...|..|+. . |..-.....|..||.+|=
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCccc
Confidence 457999976 4 333345677777777763
No 210
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=42.53 E-value=10 Score=31.21 Aligned_cols=28 Identities=21% Similarity=0.547 Sum_probs=19.4
Q ss_pred CccccccCccccCccc----cccccccCceeccC
Q 008295 428 VSKCTACGTDFSAFVR----KHHCRNCGDIFCDK 457 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~R----KHHCR~CG~VfC~~ 457 (571)
...|..|++. .+.| .-||++||+.|-.-
T Consensus 26 ky~C~fCgk~--~vkR~a~GIW~C~~C~~~~AGG 57 (72)
T 3jyw_9 26 RYDCSFCGKK--TVKRGAAGIWTCSCCKKTVAGG 57 (72)
T ss_dssp CBCCSSCCSS--CBSBCSSSCBCCSSSCCCCCCS
T ss_pred CccCCCCCCc--eeEecCCCeEECCCCCCEEeCC
Confidence 3579999864 3333 45899999987543
No 211
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=41.78 E-value=7.2 Score=32.86 Aligned_cols=46 Identities=24% Similarity=0.547 Sum_probs=30.2
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l 484 (571)
...|.+|...|.. -...-.||++||..|....+.. ...|-.|...+
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~~~ 60 (108)
T 2ckl_A 15 HLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLET--------SKYCPICDVQV 60 (108)
T ss_dssp GTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTS--------CSBCTTTCCBS
T ss_pred cCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHh--------CCcCcCCCccc
Confidence 3479999877653 2333489999999997654321 15677776543
No 212
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.56 E-value=8.7 Score=32.39 Aligned_cols=28 Identities=32% Similarity=0.828 Sum_probs=19.9
Q ss_pred CccccccCccccCccc----cccccccCceeccC
Q 008295 428 VSKCTACGTDFSAFVR----KHHCRNCGDIFCDK 457 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~R----KHHCR~CG~VfC~~ 457 (571)
...|..|++. .+.| .-||++||+.|-.-
T Consensus 35 ky~CpfCGk~--~vkR~a~GIW~C~kCg~~~AGG 66 (83)
T 3j21_i 35 KHTCPVCGRK--AVKRISTGIWQCQKCGATFAGG 66 (83)
T ss_dssp CBCCSSSCSS--CEEEEETTEEEETTTCCEEECC
T ss_pred ccCCCCCCCc--eeEecCcCeEEcCCCCCEEeCC
Confidence 3479999875 2333 45999999998553
No 213
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=40.28 E-value=6.1 Score=34.98 Aligned_cols=56 Identities=21% Similarity=0.455 Sum_probs=5.3
Q ss_pred CCccCcCCccccccCccccCcc----------ccccc----cccCceeccCCCCCcEeccCCCCCCceeeccccHHHH
Q 008295 421 HWVPDEAVSKCTACGTDFSAFV----------RKHHC----RNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (571)
Q Consensus 421 ~WvpD~~~~~C~~C~~~Fsl~~----------RKHHC----R~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~l 484 (571)
.|.-|.....|.+|...|...- ....| -.||.+||..|....+.. ..+|-.|...+
T Consensus 41 ~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--------~~~CP~Cr~~~ 110 (117)
T 4a0k_B 41 LWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPLDNREW 110 (117)
T ss_dssp EEEECCCC----------------------------------------------------------------------
T ss_pred EEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--------CCcCCCCCCee
Confidence 4666667789999999886421 01112 269999999998755432 35788887653
No 214
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=40.11 E-value=12 Score=28.55 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=9.5
Q ss_pred CccccccCccccC
Q 008295 428 VSKCTACGTDFSA 440 (571)
Q Consensus 428 ~~~C~~C~~~Fsl 440 (571)
.-.|..|++.|..
T Consensus 15 ~~~C~~C~k~f~~ 27 (77)
T 2ct1_A 15 PYECYICHARFTQ 27 (77)
T ss_dssp SEECTTTCCEESC
T ss_pred CeECCCcCchhCC
Confidence 3468888888864
No 215
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=39.85 E-value=7.5 Score=40.41 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=0.0
Q ss_pred CCCCCccccCCCCCccccccC
Q 008295 551 SSGSETIECGVCQHPFLVSAH 571 (571)
Q Consensus 551 ~~D~ev~~C~iCqq~F~~~~r 571 (571)
..|.++..|..|+..|+++.|
T Consensus 370 ~~~~~~~~c~~c~~~f~~~~r 390 (434)
T 3mpx_A 370 VPVTHVMMCMNCGCDFSLTLR 390 (434)
T ss_dssp ---------------------
T ss_pred CCcccCCcCCCcCCCCCCcch
Confidence 348999999999999998765
No 216
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=39.64 E-value=8.5 Score=31.79 Aligned_cols=10 Identities=20% Similarity=0.477 Sum_probs=8.5
Q ss_pred ccccccCccc
Q 008295 429 SKCTACGTDF 438 (571)
Q Consensus 429 ~~C~~C~~~F 438 (571)
-.|..|++.|
T Consensus 35 ~~C~~C~k~F 44 (96)
T 2ctd_A 35 VSCPTCQAVG 44 (96)
T ss_dssp EECTTTCSCE
T ss_pred cCCCCCCCCc
Confidence 4799999998
No 217
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=39.62 E-value=11 Score=32.37 Aligned_cols=27 Identities=30% Similarity=0.656 Sum_probs=19.3
Q ss_pred ccccccCccccCccc----cccccccCceeccC
Q 008295 429 SKCTACGTDFSAFVR----KHHCRNCGDIFCDK 457 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~R----KHHCR~CG~VfC~~ 457 (571)
..|..|++. .+.| .-||+.||+.|-.-
T Consensus 37 y~CpfCgk~--~vkR~a~GIW~C~~Cg~~~AGG 67 (92)
T 3iz5_m 37 YFCEFCGKF--AVKRKAVGIWGCKDCGKVKAGG 67 (92)
T ss_dssp BCCTTTCSS--CBEEEETTEEECSSSCCEEECC
T ss_pred ccCcccCCC--eeEecCcceEEcCCCCCEEeCC
Confidence 479999875 3333 45899999988554
No 218
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=36.18 E-value=13 Score=31.81 Aligned_cols=28 Identities=21% Similarity=0.547 Sum_probs=19.6
Q ss_pred CccccccCccccCccc----cccccccCceeccC
Q 008295 428 VSKCTACGTDFSAFVR----KHHCRNCGDIFCDK 457 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~R----KHHCR~CG~VfC~~ 457 (571)
...|..|++. .+.| .-||+.||+.|-.-
T Consensus 36 ky~CpfCgk~--~vkR~a~GIW~C~~C~~~~AGG 67 (92)
T 3izc_m 36 RYDCSFCGKK--TVKRGAAGIWTCSCCKKTVAGG 67 (92)
T ss_dssp CCCCSSSCSS--CCEEEETTEEECTTTCCEEECC
T ss_pred CCcCCCCCCc--eeeecccceEEcCCCCCEEeCC
Confidence 3479999864 3333 35899999988554
No 219
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=35.95 E-value=10 Score=30.72 Aligned_cols=46 Identities=20% Similarity=0.525 Sum_probs=29.7
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
...|.+|...|..- ..-..||+.||..|....+.-. ....|-.|..
T Consensus 13 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~------~~~~CP~Cr~ 58 (92)
T 3ztg_A 13 ELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLES------DEHTCPTCHQ 58 (92)
T ss_dssp TTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHC------TTCCCTTTCC
T ss_pred CCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhc------CCCcCcCCCC
Confidence 45899999877532 2223399999999986543211 1256777764
No 220
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=35.51 E-value=8.1 Score=32.94 Aligned_cols=36 Identities=25% Similarity=0.699 Sum_probs=26.1
Q ss_pred CCccccccCccccCc---cccccccccCceeccCCCCCc
Q 008295 427 AVSKCTACGTDFSAF---VRKHHCRNCGDIFCDKCTHGR 462 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl~---~RKHHCR~CG~VfC~~CS~~~ 462 (571)
+...|.+|...|... .+....-.||.+||..|....
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 109 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 109 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHH
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHH
Confidence 466899999888653 223345689999999997654
No 221
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=35.29 E-value=9.6 Score=34.58 Aligned_cols=44 Identities=20% Similarity=0.450 Sum_probs=29.5
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
..|.+|...|..-.. -.||.+||..|....+.. ....|-.|...
T Consensus 79 ~~C~IC~~~~~~pv~----~~CgH~fC~~Ci~~~~~~-------~~~~CP~Cr~~ 122 (150)
T 1z6u_A 79 FMCVCCQELVYQPVT----TECFHNVCKDCLQRSFKA-------QVFSCPACRHD 122 (150)
T ss_dssp TBCTTTSSBCSSEEE----CTTSCEEEHHHHHHHHHT-------TCCBCTTTCCB
T ss_pred CEeecCChhhcCCEE----cCCCCchhHHHHHHHHHh-------CCCcCCCCCcc
Confidence 479999887753222 489999999998654321 22467777643
No 222
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=33.70 E-value=15 Score=25.57 Aligned_cols=12 Identities=33% Similarity=0.836 Sum_probs=8.9
Q ss_pred ccccccCccccC
Q 008295 429 SKCTACGTDFSA 440 (571)
Q Consensus 429 ~~C~~C~~~Fsl 440 (571)
-.|..|++.|..
T Consensus 13 ~~C~~C~k~f~~ 24 (48)
T 2epr_A 13 VACEICGKIFRD 24 (48)
T ss_dssp EEETTTTEEESS
T ss_pred eeCCCCCcccCC
Confidence 468888888864
No 223
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=33.51 E-value=13 Score=24.93 Aligned_cols=10 Identities=40% Similarity=1.089 Sum_probs=8.0
Q ss_pred cccCCCCCcc
Q 008295 557 IECGVCQHPF 566 (571)
Q Consensus 557 ~~C~iCqq~F 566 (571)
++|++|||-.
T Consensus 7 vqcpvcqq~m 16 (29)
T 3vhs_A 7 VQCPVCQQMM 16 (29)
T ss_dssp EECTTTCCEE
T ss_pred eeChHHHHhC
Confidence 5799999854
No 224
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=32.32 E-value=22 Score=27.92 Aligned_cols=12 Identities=50% Similarity=1.057 Sum_probs=8.7
Q ss_pred ccccccCccccC
Q 008295 429 SKCTACGTDFSA 440 (571)
Q Consensus 429 ~~C~~C~~~Fsl 440 (571)
-.|..|++.|..
T Consensus 9 ~~C~~C~~~f~~ 20 (96)
T 2dmd_A 9 HKCEVCGKCFSR 20 (96)
T ss_dssp CCBTTTTBCCCC
T ss_pred eECCCCCCccCC
Confidence 468888888863
No 225
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=32.29 E-value=20 Score=26.31 Aligned_cols=12 Identities=17% Similarity=0.753 Sum_probs=8.5
Q ss_pred ccccccCccccC
Q 008295 429 SKCTACGTDFSA 440 (571)
Q Consensus 429 ~~C~~C~~~Fsl 440 (571)
-.|..|++.|..
T Consensus 11 ~~C~~C~k~f~~ 22 (66)
T 2drp_A 11 YRCKVCSRVYTH 22 (66)
T ss_dssp EECTTTCCEESS
T ss_pred eECCCCcchhCC
Confidence 367888888763
No 226
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.24 E-value=7.6 Score=28.88 Aligned_cols=30 Identities=27% Similarity=0.658 Sum_probs=21.0
Q ss_pred CccccccCccccCc-----cccccccccCceeccC
Q 008295 428 VSKCTACGTDFSAF-----VRKHHCRNCGDIFCDK 457 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~-----~RKHHCR~CG~VfC~~ 457 (571)
.-.|..|++.|... .+.+.|..||+.|-..
T Consensus 18 ~~~C~~C~k~f~~~~~l~~~~~~~C~~C~~~f~~~ 52 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQE 52 (73)
T ss_dssp EEECSSSCCEEECCCCCCCSSSCCCHHHHHTCSCC
T ss_pred CeeCCcccchhCCHHHhCcCCCCCCCCCChhhcCH
Confidence 35788898888532 4567888888877443
No 227
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=31.69 E-value=12 Score=32.06 Aligned_cols=44 Identities=23% Similarity=0.448 Sum_probs=28.9
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
...|.+|...|..-.. -.||.+||..|....+... ...|-.|..
T Consensus 18 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~ 61 (118)
T 3hct_A 18 KYECPICLMALREAVQ----TPCGHRFCKACIIKSIRDA-------GHKCPVDNE 61 (118)
T ss_dssp GGBCTTTCSBCSSEEE----CTTSCEEEHHHHHHHHHHH-------CSBCTTTCC
T ss_pred CCCCCcCChhhcCeEE----CCcCChhhHHHHHHHHhhC-------CCCCCCCCC
Confidence 4589999987754322 2699999999986543211 126777753
No 228
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.34 E-value=21 Score=27.36 Aligned_cols=13 Identities=23% Similarity=0.677 Sum_probs=9.7
Q ss_pred CccccccCccccC
Q 008295 428 VSKCTACGTDFSA 440 (571)
Q Consensus 428 ~~~C~~C~~~Fsl 440 (571)
.-.|..|++.|..
T Consensus 15 ~~~C~~C~~~f~~ 27 (86)
T 1x6h_A 15 PYACSHCDKTFRQ 27 (86)
T ss_dssp CEECSSSSCEESS
T ss_pred CCcCCCCCCccCC
Confidence 3478888888864
No 229
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=31.29 E-value=21 Score=27.01 Aligned_cols=10 Identities=40% Similarity=1.112 Sum_probs=6.2
Q ss_pred cccccCcccc
Q 008295 430 KCTACGTDFS 439 (571)
Q Consensus 430 ~C~~C~~~Fs 439 (571)
.|..|++.|.
T Consensus 31 ~C~~C~~~f~ 40 (82)
T 2kmk_A 31 PCQYCGKRFH 40 (82)
T ss_dssp ECSSSCCEES
T ss_pred eCCcCChhhC
Confidence 5666666664
No 230
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=30.82 E-value=22 Score=27.39 Aligned_cols=27 Identities=26% Similarity=0.624 Sum_probs=16.6
Q ss_pred CccccccCc-cc-cCccccccccccCcee
Q 008295 428 VSKCTACGT-DF-SAFVRKHHCRNCGDIF 454 (571)
Q Consensus 428 ~~~C~~C~~-~F-sl~~RKHHCR~CG~Vf 454 (571)
...|..|+. .| ....-|++|.+||...
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 568999986 23 1122367777777653
No 231
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=30.74 E-value=23 Score=28.30 Aligned_cols=25 Identities=28% Similarity=0.761 Sum_probs=19.2
Q ss_pred CccccccCccccCcc-ccccccccCc
Q 008295 428 VSKCTACGTDFSAFV-RKHHCRNCGD 452 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~-RKHHCR~CG~ 452 (571)
.-.|..|+..|.+-. ....|+.||.
T Consensus 21 ~Y~C~~Cg~~~~l~~~~~iRC~~CG~ 46 (63)
T 3h0g_L 21 IYLCADCGARNTIQAKEVIRCRECGH 46 (63)
T ss_dssp CCBCSSSCCBCCCCSSSCCCCSSSCC
T ss_pred EEECCCCCCeeecCCCCceECCCCCc
Confidence 468999999998653 3577888875
No 232
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=30.64 E-value=13 Score=32.84 Aligned_cols=29 Identities=28% Similarity=0.688 Sum_probs=21.3
Q ss_pred cccccCccccCccccccccccCceeccCCCCCc
Q 008295 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~ 462 (571)
.|.+|...|..- .--.||+.||..|....
T Consensus 55 ~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~~ 83 (138)
T 4ayc_A 55 QCIICSEYFIEA----VTLNCAHSFCSYCINEW 83 (138)
T ss_dssp BCTTTCSBCSSE----EEETTSCEEEHHHHHHH
T ss_pred CCcccCcccCCc----eECCCCCCccHHHHHHH
Confidence 699998877532 12369999999997543
No 233
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=30.07 E-value=13 Score=32.51 Aligned_cols=29 Identities=28% Similarity=0.602 Sum_probs=19.8
Q ss_pred CccccccCccccCccc----cccccccCceeccCC
Q 008295 428 VSKCTACGTDFSAFVR----KHHCRNCGDIFCDKC 458 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~R----KHHCR~CG~VfC~~C 458 (571)
...|..|++. .+.| .-||+.||+.|-.--
T Consensus 36 ky~CpfCgk~--~vKR~a~GIW~C~kCg~~~AGGA 68 (103)
T 4a17_Y 36 KYGCPFCGKV--AVKRAAVGIWKCKPCKKIIAGGA 68 (103)
T ss_dssp CEECTTTCCE--EEEEEETTEEEETTTTEEEECCS
T ss_pred CCCCCCCCCc--eeeecCcceEEcCCCCCEEeCCc
Confidence 3479999864 2333 468999999885543
No 234
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=29.69 E-value=22 Score=27.82 Aligned_cols=26 Identities=31% Similarity=0.710 Sum_probs=16.4
Q ss_pred ccccccCccccCc------------cccccccccCcee
Q 008295 429 SKCTACGTDFSAF------------VRKHHCRNCGDIF 454 (571)
Q Consensus 429 ~~C~~C~~~Fsl~------------~RKHHCR~CG~Vf 454 (571)
-.|..|++.|... .+.+.|..||+.|
T Consensus 4 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f 41 (88)
T 1llm_C 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41 (88)
T ss_dssp EECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred CcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCcc
Confidence 3688899888641 1234566666665
No 235
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=29.64 E-value=22 Score=27.45 Aligned_cols=10 Identities=40% Similarity=1.039 Sum_probs=6.0
Q ss_pred cccccCcccc
Q 008295 430 KCTACGTDFS 439 (571)
Q Consensus 430 ~C~~C~~~Fs 439 (571)
.|..|++.|.
T Consensus 36 ~C~~C~~~f~ 45 (90)
T 1a1h_A 36 QCRICMRNFS 45 (90)
T ss_dssp ECTTTCCEES
T ss_pred cCCCCCcccC
Confidence 5666666664
No 236
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=29.44 E-value=29 Score=26.91 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=15.7
Q ss_pred CccccccCc-cc--cCccccccccccCcee
Q 008295 428 VSKCTACGT-DF--SAFVRKHHCRNCGDIF 454 (571)
Q Consensus 428 ~~~C~~C~~-~F--sl~~RKHHCR~CG~Vf 454 (571)
+..|..|+. .+ ..-..-.-|..||.|+
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCCEE
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCCEE
Confidence 457999975 32 2233455666666665
No 237
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=29.15 E-value=21 Score=31.32 Aligned_cols=27 Identities=26% Similarity=0.716 Sum_probs=18.5
Q ss_pred ccccccCccccCc------------cccccccccCceec
Q 008295 429 SKCTACGTDFSAF------------VRKHHCRNCGDIFC 455 (571)
Q Consensus 429 ~~C~~C~~~Fsl~------------~RKHHCR~CG~VfC 455 (571)
=.|..|++.|... .|.+-|..||+.|-
T Consensus 23 y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~ 61 (133)
T 2lt7_A 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFP 61 (133)
T ss_dssp EEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEES
T ss_pred eECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecc
Confidence 3799999999742 23456777777763
No 238
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=28.88 E-value=21 Score=37.05 Aligned_cols=39 Identities=26% Similarity=0.681 Sum_probs=27.5
Q ss_pred CccccccCccccCccccccccccCce-eccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDI-FCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~V-fC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
...|.+|...|.... --.||++ ||..|.... +.|-.|..
T Consensus 295 ~~~C~IC~~~~~~~v----~lpCgH~~fC~~C~~~~------------~~CP~CR~ 334 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVV----FIPCGHLVVCQECAPSL------------RKCPICRG 334 (345)
T ss_dssp TCBCTTTSSSBCCEE----EETTCCEEECTTTGGGC------------SBCTTTCC
T ss_pred CCCCCccCCcCCceE----EcCCCChhHhHHHHhcC------------CcCCCCCC
Confidence 357999988775322 2379999 999997632 56777764
No 239
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=28.50 E-value=14 Score=33.08 Aligned_cols=45 Identities=22% Similarity=0.598 Sum_probs=31.1
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
.-.|.+|...|..-.. -.||.+||..|....+. .....|-.|...
T Consensus 31 ~~~C~IC~~~~~~pv~----~~CgH~FC~~Ci~~~~~-------~~~~~CP~Cr~~ 75 (141)
T 3knv_A 31 KYLCSACRNVLRRPFQ----AQCGHRYCSFCLASILS-------SGPQNCAACVHE 75 (141)
T ss_dssp GGBCTTTCSBCSSEEE----CTTSCEEEHHHHHHHGG-------GSCEECHHHHHT
T ss_pred CcCCCCCChhhcCcEE----CCCCCccCHHHHHHHHh-------cCCCCCCCCCCc
Confidence 4579999887753322 38999999999875432 123578888764
No 240
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=27.89 E-value=24 Score=28.58 Aligned_cols=49 Identities=20% Similarity=0.464 Sum_probs=31.2
Q ss_pred CCccccccCccccCcccc-ccccccCceeccCCCCCcEeccCCCCCCceeeccccHHH
Q 008295 427 AVSKCTACGTDFSAFVRK-HHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (571)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RK-HHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~~ 483 (571)
+...|.+|-..|+....+ .-| .||+.||..|....+. .....|-.|.+.
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~-------~~~~~CP~CR~~ 59 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRT-------DENGLCPACRKP 59 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTT-------SSCSBCTTTCCB
T ss_pred cCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHh-------cCCCCCCCCCCc
Confidence 346899999888653222 224 6999999999753321 123567777653
No 241
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=27.75 E-value=20 Score=29.44 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=19.8
Q ss_pred CccccccCcc-cc-CccccccccccCceeccC
Q 008295 428 VSKCTACGTD-FS-AFVRKHHCRNCGDIFCDK 457 (571)
Q Consensus 428 ~~~C~~C~~~-Fs-l~~RKHHCR~CG~VfC~~ 457 (571)
...|..|++. +. .....-+|++||+.|-.-
T Consensus 27 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 27 KYKCPVCGFPKLKRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred CccCCCCCCceeEEEEeEEEECCCCCcEEECC
Confidence 4589999862 11 122347899999998553
No 242
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.71 E-value=19 Score=29.58 Aligned_cols=36 Identities=22% Similarity=0.512 Sum_probs=23.6
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEe
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIA 464 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~ 464 (571)
...|.+|-..|..-. ...-..||+.||..|....+.
T Consensus 5 ~~~C~IC~~~~~~~~-~~~l~~CgH~FC~~Cl~~~~~ 40 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQ-MTTIAQCQCIFCTLCLKQYVE 40 (94)
T ss_dssp BCCCSSSCCCCBGGG-EEEETTTTEEEEHHHHHHHHH
T ss_pred CcCCcccCccccccc-ceEcCCCCCcccHHHHHHHHH
Confidence 457999977664221 112236999999999876543
No 243
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.62 E-value=26 Score=27.43 Aligned_cols=12 Identities=33% Similarity=0.836 Sum_probs=8.4
Q ss_pred ccccccCccccC
Q 008295 429 SKCTACGTDFSA 440 (571)
Q Consensus 429 ~~C~~C~~~Fsl 440 (571)
-.|..|++.|..
T Consensus 8 ~~C~~C~~~f~~ 19 (95)
T 2yt9_A 8 VACEICGKIFRD 19 (95)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCCccCC
Confidence 467788877753
No 244
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=27.53 E-value=20 Score=30.87 Aligned_cols=42 Identities=19% Similarity=0.418 Sum_probs=28.8
Q ss_pred CCccCcCCccccccCccccCcc----------c----cccccccCceeccCCCCCc
Q 008295 421 HWVPDEAVSKCTACGTDFSAFV----------R----KHHCRNCGDIFCDKCTHGR 462 (571)
Q Consensus 421 ~WvpD~~~~~C~~C~~~Fsl~~----------R----KHHCR~CG~VfC~~CS~~~ 462 (571)
.|.-|.+...|.+|...|...- . ...--.||++|+..|....
T Consensus 30 ~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~W 85 (106)
T 3dpl_R 30 LWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW 85 (106)
T ss_dssp EEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHH
T ss_pred EeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHH
Confidence 5666667789999998887431 0 0112469999999997654
No 245
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=27.28 E-value=28 Score=28.18 Aligned_cols=28 Identities=36% Similarity=1.072 Sum_probs=20.5
Q ss_pred CccccccCccccCcccccccccc-CceeccCCCC
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNC-GDIFCDKCTH 460 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~C-G~VfC~~CS~ 460 (571)
-.-|.+|... .. ..|.-| |.+||..|-.
T Consensus 8 ~pWC~ICneD--At---lrC~gCdgDLYC~rC~r 36 (67)
T 2d8v_A 8 LPWCCICNED--AT---LRCAGCDGDLYCARCFR 36 (67)
T ss_dssp CSSCTTTCSC--CC---EEETTTTSEEECSSHHH
T ss_pred CCeeEEeCCC--Ce---EEecCCCCceehHHHHH
Confidence 4458888875 22 568888 8999998864
No 246
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=27.26 E-value=14 Score=28.09 Aligned_cols=27 Identities=30% Similarity=0.893 Sum_probs=18.8
Q ss_pred ccccccCccccCccccccccccCce-eccCC
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGDI-FCDKC 458 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~V-fC~~C 458 (571)
-.|..|++. +.+|.||..|-.. +|..|
T Consensus 7 ~~Cd~C~~~---ig~R~~C~~C~dyDLC~~C 34 (52)
T 1tot_A 7 YTCNECKHH---VETRWHCTVCEDYDLCINC 34 (52)
T ss_dssp EEETTTTEE---ESSEEEESSSSSCEECHHH
T ss_pred EECCCCCCC---CcceEEcCCCCCchhHHHH
Confidence 478899886 3567888888554 55554
No 247
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=26.80 E-value=20 Score=38.05 Aligned_cols=43 Identities=19% Similarity=0.550 Sum_probs=29.2
Q ss_pred ccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
..|.+|...|. ..-.-.||++||..|...... . ..+.|-.|..
T Consensus 333 ~~C~ICle~~~----~pv~lpCGH~FC~~Ci~~wl~--~-----~~~~CP~CR~ 375 (389)
T 2y1n_A 333 QLCKICAENDK----DVKIEPCGHLMCTSCLTSWQE--S-----EGQGCPFCRC 375 (389)
T ss_dssp SBCTTTSSSBC----CEEEETTCCEECHHHHHHHHH--H-----TCSBCTTTCC
T ss_pred CCCCccCcCCC----CeEEeCCCChhhHHHHHHHHh--c-----CCCCCCCCCC
Confidence 58999987763 334568999999999854321 0 2356777754
No 248
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=26.77 E-value=38 Score=27.09 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=10.0
Q ss_pred CccccccCccccC
Q 008295 428 VSKCTACGTDFSA 440 (571)
Q Consensus 428 ~~~C~~C~~~Fsl 440 (571)
.-.|..|++.|..
T Consensus 17 ~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 17 EFICKFCGRHFTK 29 (106)
T ss_dssp CCBCSSSCCBCSS
T ss_pred CeECCCCCCccCC
Confidence 3579999998864
No 249
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=26.37 E-value=32 Score=29.91 Aligned_cols=35 Identities=23% Similarity=0.677 Sum_probs=25.7
Q ss_pred ccccccCccccCccccccccccCce-----eccCCCCCcE
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGDI-----FCDKCTHGRI 463 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~V-----fC~~CS~~~i 463 (571)
..|..|+.......+.+||..|++- +|-+|-..-.
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCCEEECccccchhhccccCcchhhHHH
Confidence 4788998887777777888888874 5777755433
No 250
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=26.24 E-value=21 Score=24.51 Aligned_cols=21 Identities=29% Similarity=0.854 Sum_probs=15.4
Q ss_pred cccccCccccCccccccccccCc
Q 008295 430 KCTACGTDFSAFVRKHHCRNCGD 452 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~ 452 (571)
.|..|+. ..|.||..|.+||.
T Consensus 7 ~C~~C~~--~Nfa~r~~C~~C~~ 27 (32)
T 2lk0_A 7 LCNKCCL--NNFRKRLKCFRCGA 27 (32)
T ss_dssp ECTTTCC--EEETTCCBCTTTCC
T ss_pred CcCcCcC--CcChhcceecCCCC
Confidence 4666643 56788899999986
No 251
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=26.03 E-value=29 Score=25.89 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=9.4
Q ss_pred Ccccc--ccCccccC
Q 008295 428 VSKCT--ACGTDFSA 440 (571)
Q Consensus 428 ~~~C~--~C~~~Fsl 440 (571)
.-.|. .|++.|..
T Consensus 19 ~~~C~~~~C~k~f~~ 33 (73)
T 1f2i_G 19 PYACPVESCDRRFSR 33 (73)
T ss_dssp CEECSSTTBCCEESS
T ss_pred ccCCcCCCCCCccCC
Confidence 45786 59998864
No 252
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=25.84 E-value=30 Score=28.26 Aligned_cols=13 Identities=23% Similarity=0.662 Sum_probs=9.3
Q ss_pred CccccccCccccC
Q 008295 428 VSKCTACGTDFSA 440 (571)
Q Consensus 428 ~~~C~~C~~~Fsl 440 (571)
.-.|..|++.|..
T Consensus 7 ~~~C~~C~~~f~~ 19 (124)
T 2dlq_A 7 GVECPTCHKKFLS 19 (124)
T ss_dssp SCCCTTTCCCCSS
T ss_pred CCCCCCCCCcCCC
Confidence 3468888888863
No 253
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.84 E-value=75 Score=30.30 Aligned_cols=15 Identities=20% Similarity=0.487 Sum_probs=13.2
Q ss_pred cccCCCCCccccccC
Q 008295 557 IECGVCQHPFLVSAH 571 (571)
Q Consensus 557 ~~C~iCqq~F~~~~r 571 (571)
..|.+|++.|+++.|
T Consensus 162 ~~C~~C~~~F~~~~r 176 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNR 176 (220)
T ss_dssp SBCTTTCCBCCSSSC
T ss_pred CccCCCCCccCCccc
Confidence 499999999998865
No 254
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=25.84 E-value=32 Score=30.34 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=8.7
Q ss_pred CceeeccccHHH
Q 008295 472 QPVRVCDRCMAE 483 (571)
Q Consensus 472 ~pvRVC~~Cy~~ 483 (571)
-.++||+.|.+.
T Consensus 24 F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 24 FDLPTCDDCRDA 35 (111)
T ss_dssp TSCCCCTTTCSS
T ss_pred CCeeechhhccc
Confidence 457888888753
No 255
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=25.70 E-value=25 Score=30.68 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=18.0
Q ss_pred CccccccCccccCccccc-cccccCc
Q 008295 428 VSKCTACGTDFSAFVRKH-HCRNCGD 452 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKH-HCR~CG~ 452 (571)
.-.|..|+..|....+.. .|-.||.
T Consensus 73 ~~~C~~CG~~~e~~~~~~~~CP~Cgs 98 (119)
T 2kdx_A 73 ELECKDCSHVFKPNALDYGVCEKCHS 98 (119)
T ss_dssp EEECSSSSCEECSCCSTTCCCSSSSS
T ss_pred eEEcCCCCCEEeCCCCCCCcCccccC
Confidence 447889999988766555 6666665
No 256
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.41 E-value=31 Score=28.15 Aligned_cols=9 Identities=0% Similarity=-0.105 Sum_probs=5.9
Q ss_pred cccccCccc
Q 008295 430 KCTACGTDF 438 (571)
Q Consensus 430 ~C~~C~~~F 438 (571)
.|..|++.|
T Consensus 52 ~C~~C~~~f 60 (115)
T 2dmi_A 52 TDNNNPKRW 60 (115)
T ss_dssp CCCCCCSCC
T ss_pred cCCCCCccc
Confidence 366777666
No 257
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=25.39 E-value=18 Score=30.68 Aligned_cols=44 Identities=20% Similarity=0.537 Sum_probs=28.9
Q ss_pred CccccccCccccCccccccccccCceeccCCCCCcEeccCCCCCCceeeccccHH
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~CS~~~i~Lp~~~~~~pvRVC~~Cy~ 482 (571)
...|.+|...|..-.. -.||.+||..|....+... .+.|-.|..
T Consensus 23 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~ 66 (116)
T 1rmd_A 23 SISCQICEHILADPVE----TSCKHLFCRICILRCLKVM-------GSYCPSCRY 66 (116)
T ss_dssp HTBCTTTCSBCSSEEE----CTTSCEEEHHHHHHHHHHT-------CSBCTTTCC
T ss_pred CCCCCCCCcHhcCcEE----cCCCCcccHHHHHHHHhHC-------cCcCCCCCC
Confidence 3579999887754322 3799999999976543221 245777764
No 258
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=25.22 E-value=14 Score=31.32 Aligned_cols=35 Identities=26% Similarity=0.714 Sum_probs=24.9
Q ss_pred CccccccCccccCc---cccccccccCceeccCCCCCc
Q 008295 428 VSKCTACGTDFSAF---VRKHHCRNCGDIFCDKCTHGR 462 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~---~RKHHCR~CG~VfC~~CS~~~ 462 (571)
...|.+|...|..- .+.-.--.||++||..|....
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 44 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 44 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHH
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHH
Confidence 45799999887643 122245589999999998654
No 259
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=25.20 E-value=21 Score=30.52 Aligned_cols=24 Identities=42% Similarity=0.935 Sum_probs=18.0
Q ss_pred cccccCccccCccc--cccccccCcee
Q 008295 430 KCTACGTDFSAFVR--KHHCRNCGDIF 454 (571)
Q Consensus 430 ~C~~C~~~Fsl~~R--KHHCR~CG~Vf 454 (571)
.|. |+.....+.| +++|++||..-
T Consensus 50 kC~-C~~Rt~sl~r~P~~~C~~Cg~~~ 75 (92)
T 2kwq_A 50 KCP-CGNRTISLDRLPKKHCSTCGLFK 75 (92)
T ss_dssp ECT-TSCEEEESSSSCCSCCTTTCSCC
T ss_pred ECC-CCCceeEeeeCCCCCCCCCCCCc
Confidence 586 8876655556 78999999874
No 260
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.17 E-value=30 Score=28.03 Aligned_cols=26 Identities=35% Similarity=0.810 Sum_probs=15.0
Q ss_pred ccccccCccccCc------------cccccccccCceec
Q 008295 429 SKCTACGTDFSAF------------VRKHHCRNCGDIFC 455 (571)
Q Consensus 429 ~~C~~C~~~Fsl~------------~RKHHCR~CG~VfC 455 (571)
-.| .|++.|... .+.+.|..||+.|-
T Consensus 11 ~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 48 (110)
T 2csh_A 11 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFK 48 (110)
T ss_dssp EEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEES
T ss_pred Eec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccC
Confidence 467 677777531 12345666666663
No 261
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=25.14 E-value=32 Score=35.27 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=22.2
Q ss_pred CccCcC-CccccccCcc-----ccCccccccccccCceec
Q 008295 422 WVPDEA-VSKCTACGTD-----FSAFVRKHHCRNCGDIFC 455 (571)
Q Consensus 422 WvpD~~-~~~C~~C~~~-----Fsl~~RKHHCR~CG~VfC 455 (571)
|.+|-. ...|..|+.. +..-.+-.-|..||.|+=
T Consensus 14 ~~~~~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 14 RGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp ---CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred cCccccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 777655 6689999874 334456778888888873
No 262
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.99 E-value=29 Score=28.12 Aligned_cols=26 Identities=23% Similarity=0.649 Sum_probs=14.8
Q ss_pred ccccccCccccCcc----------ccccccccCcee
Q 008295 429 SKCTACGTDFSAFV----------RKHHCRNCGDIF 454 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~----------RKHHCR~CG~Vf 454 (571)
-.|..|++.|.... +.+.|..||+.|
T Consensus 17 ~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f 52 (107)
T 1wjp_A 17 YQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRF 52 (107)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCB
T ss_pred eECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCcc
Confidence 46777777775321 224566666655
No 263
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=24.78 E-value=26 Score=30.53 Aligned_cols=26 Identities=27% Similarity=0.796 Sum_probs=19.7
Q ss_pred CccccccCccccCccccccccccCceeccC
Q 008295 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDK 457 (571)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~VfC~~ 457 (571)
...|..|...=++ .-|-.||.|.|++
T Consensus 24 ~~~C~~C~~~~~~----W~CL~CG~vgCgr 49 (109)
T 3c5k_A 24 TQPCGDCGTIQEN----WVCLSCYQVYCGR 49 (109)
T ss_dssp TCCCTTTCCCSSE----EEETTTCCEEECT
T ss_pred CCcCccccCCCCe----eeeeecCccccCC
Confidence 4579999875443 3499999999975
No 264
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=24.23 E-value=28 Score=23.54 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=8.7
Q ss_pred ccccccCccccC
Q 008295 429 SKCTACGTDFSA 440 (571)
Q Consensus 429 ~~C~~C~~~Fsl 440 (571)
-.|..|++.|..
T Consensus 11 ~~C~~C~k~f~~ 22 (45)
T 2epq_A 11 YSCPVCGLRFKR 22 (45)
T ss_dssp SEETTTTEECSC
T ss_pred CcCCCCCcccCC
Confidence 468888888764
No 265
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=24.02 E-value=18 Score=28.61 Aligned_cols=29 Identities=28% Similarity=0.693 Sum_probs=20.6
Q ss_pred ccccccCccccCccccccccccCce-eccCCCCC
Q 008295 429 SKCTACGTDFSAFVRKHHCRNCGDI-FCDKCTHG 461 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~V-fC~~CS~~ 461 (571)
..|.+|...|.... --.||++ ||..|...
T Consensus 25 ~~C~iC~~~~~~~~----~~pCgH~~~C~~C~~~ 54 (74)
T 4ic3_A 25 KLCKICMDRNIAIV----FVPCGHLVTCKQCAEA 54 (74)
T ss_dssp TBCTTTSSSBCCEE----EETTCCBCCCHHHHTT
T ss_pred CCCCCCCCCCCCEE----EcCCCChhHHHHhhhc
Confidence 47999987664322 2379999 99999653
No 266
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=23.91 E-value=36 Score=25.81 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=17.6
Q ss_pred ccccccCccccCcc----ccccccccCc
Q 008295 429 SKCTACGTDFSAFV----RKHHCRNCGD 452 (571)
Q Consensus 429 ~~C~~C~~~Fsl~~----RKHHCR~CG~ 452 (571)
-.|..|++.|+... =-.+|-.||.
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred EEeeccCCCccHHHHhhCCCcccCccCc
Confidence 36999999998642 2477888886
No 267
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=23.90 E-value=37 Score=23.41 Aligned_cols=21 Identities=24% Similarity=0.914 Sum_probs=15.6
Q ss_pred cccccCccccCccccccccccCc
Q 008295 430 KCTACGTDFSAFVRKHHCRNCGD 452 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~ 452 (571)
.|..|+. ..|.||..|..||.
T Consensus 8 ~C~~C~~--~Nfa~R~~C~~C~~ 28 (33)
T 2k1p_A 8 QCKTCSN--VNWARRSECNMCNT 28 (33)
T ss_dssp BCSSSCC--BCCTTCSBCSSSCC
T ss_pred ccCCCCC--ccccccccccccCC
Confidence 4666753 56788899999886
No 268
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.84 E-value=25 Score=30.86 Aligned_cols=22 Identities=41% Similarity=0.907 Sum_probs=0.0
Q ss_pred ccccCcee---------ccCCCCCcEeccCC
Q 008295 447 CRNCGDIF---------CDKCTHGRIALTAD 468 (571)
Q Consensus 447 CR~CG~Vf---------C~~CS~~~i~Lp~~ 468 (571)
|+.||..| |-.|-+..+..+.+
T Consensus 70 C~~CG~~F~~~~~kPsrCP~CkSe~Ie~P~F 100 (105)
T 2gmg_A 70 CRKCGFVFKAEINIPSRCPKCKSEWIEEPRF 100 (105)
T ss_dssp BTTTCCBCCCCSSCCSSCSSSCCCCBCCCCE
T ss_pred hhhCcCeecccCCCCCCCcCCCCCccCCcce
No 269
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.70 E-value=79 Score=30.48 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=20.3
Q ss_pred cccccccccccccccceeccCCCCCccccCCCCCccccccC
Q 008295 531 RRMREVACPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH 571 (571)
Q Consensus 531 ~~~K~~~~p~~w~~~~v~Vp~~D~ev~~C~iCqq~F~~~~r 571 (571)
+.+-.....-.|+ +|. .|.+|++.|+++.|
T Consensus 150 damf~~~~~p~W~--------~~~---~C~~C~~~F~~~~R 179 (226)
T 3zyq_A 150 DAMFAAERAPDWV--------DAE---ECHRCRVQFGVMTR 179 (226)
T ss_dssp GGCCCCCCCCCCC--------CCS---BCTTTCCBCBTTBC
T ss_pred HHhhhcccccccc--------cCC---CCcCcCCCCCcccc
Confidence 3343445556673 243 89999999998866
No 270
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.59 E-value=30 Score=26.08 Aligned_cols=12 Identities=33% Similarity=0.921 Sum_probs=8.7
Q ss_pred ccccc--cCccccC
Q 008295 429 SKCTA--CGTDFSA 440 (571)
Q Consensus 429 ~~C~~--C~~~Fsl 440 (571)
-.|.. |++.|..
T Consensus 39 ~~C~~~~C~k~f~~ 52 (79)
T 2dlk_A 39 FSCPEPACGKSFNF 52 (79)
T ss_dssp EECSCTTTCCEESS
T ss_pred eECCCCCCcCccCC
Confidence 46877 8888864
No 271
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=23.52 E-value=26 Score=29.33 Aligned_cols=12 Identities=33% Similarity=0.611 Sum_probs=9.0
Q ss_pred ccccccCccccC
Q 008295 429 SKCTACGTDFSA 440 (571)
Q Consensus 429 ~~C~~C~~~Fsl 440 (571)
-.|..|++.|..
T Consensus 75 ~~C~~C~k~f~~ 86 (129)
T 2wbt_A 75 FVCPLCLMPFSS 86 (129)
T ss_dssp EECTTTCCEESS
T ss_pred eECCCCCcccCC
Confidence 468888888864
No 272
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=21.89 E-value=33 Score=28.46 Aligned_cols=31 Identities=35% Similarity=0.962 Sum_probs=24.2
Q ss_pred cccccCccccCccccccccccCc----eeccCCCCC
Q 008295 430 KCTACGTDFSAFVRKHHCRNCGD----IFCDKCTHG 461 (571)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~----VfC~~CS~~ 461 (571)
.|..|++. .+..+|.+|..|-. -+|..|-..
T Consensus 23 ~Cd~C~~~-pI~G~RykC~~C~d~~~yDLC~~C~~~ 57 (82)
T 2fc7_A 23 KCDNCGIE-PIQGVRWHCQDCPPEMSLDFCDSCSDC 57 (82)
T ss_dssp CCSSSCCS-SEESCEEEESSSCSSSCCEEEGGGTTC
T ss_pred CCCCCCCC-cceeceEECCcCCCCcceecHHHHHhC
Confidence 78899762 45668999999976 599999764
No 273
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.88 E-value=58 Score=25.39 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=14.0
Q ss_pred CCCccCc-CCccccccCccccC
Q 008295 420 DHWVPDE-AVSKCTACGTDFSA 440 (571)
Q Consensus 420 ~~WvpD~-~~~~C~~C~~~Fsl 440 (571)
-.|.... ....|..|++.|..
T Consensus 16 c~~~~~~~~~~~C~~C~k~f~~ 37 (95)
T 2ej4_A 16 CKWIDEAQLSRPKKSCDRTFST 37 (95)
T ss_dssp CCCCCSSCSSSSCCCCCCCCSS
T ss_pred eEeecCCcCCCcccccccccCC
Confidence 3576333 34579999999974
No 274
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.39 E-value=26 Score=29.68 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=9.8
Q ss_pred CccccccCccccC
Q 008295 428 VSKCTACGTDFSA 440 (571)
Q Consensus 428 ~~~C~~C~~~Fsl 440 (571)
.-.|..|++.|..
T Consensus 18 py~C~~Cgk~F~~ 30 (102)
T 2ghf_A 18 GYECKYCTFQTPD 30 (102)
T ss_dssp SEECSSCSCEESC
T ss_pred CcCCCCCCCccCC
Confidence 3478899998863
No 275
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=21.31 E-value=38 Score=32.48 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=21.6
Q ss_pred CCCCccCcCC-ccccccCcc---c--cCccccccccccCceec
Q 008295 419 KDHWVPDEAV-SKCTACGTD---F--SAFVRKHHCRNCGDIFC 455 (571)
Q Consensus 419 ~~~WvpD~~~-~~C~~C~~~---F--sl~~RKHHCR~CG~VfC 455 (571)
...|+++-.. ..|..|+.. + ..-.+-.-|..||.|+=
T Consensus 11 ~~~~~~~ln~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLE 53 (197)
T 3k1f_M 11 AGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (197)
T ss_dssp --CCSSCCCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred ccccccccccCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcC
Confidence 3567777654 479999872 2 12345566666666653
No 276
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.11 E-value=38 Score=19.87 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=7.3
Q ss_pred cccccccCcee
Q 008295 444 KHHCRNCGDIF 454 (571)
Q Consensus 444 KHHCR~CG~Vf 454 (571)
.+.|..||+.|
T Consensus 3 ~~~C~~C~k~f 13 (27)
T 2kvh_A 3 PFSCSLCPQRS 13 (27)
T ss_dssp CEECSSSSCEE
T ss_pred CccCCCcChhh
Confidence 45677777766
Done!