Query 008298
Match_columns 570
No_of_seqs 361 out of 1823
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 22:02:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0153 Predicted RNA-binding 99.6 1.5E-15 3.3E-20 157.0 11.1 76 346-424 226-302 (377)
2 PLN03134 glycine-rich RNA-bind 99.6 3.3E-15 7.2E-20 139.5 11.7 85 343-428 29-117 (144)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 4.9E-14 1.1E-18 146.0 11.0 80 347-427 268-351 (352)
4 KOG0144 RNA-binding protein CU 99.5 2E-14 4.3E-19 152.0 5.8 149 272-433 54-214 (510)
5 KOG0149 Predicted RNA-binding 99.5 4E-14 8.7E-19 140.4 6.9 76 347-424 11-90 (247)
6 TIGR01659 sex-lethal sex-letha 99.5 2.6E-13 5.6E-18 143.4 13.0 81 347-428 192-278 (346)
7 TIGR01645 half-pint poly-U bin 99.5 4.3E-13 9.4E-18 150.1 13.1 79 347-426 203-285 (612)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 3.1E-13 6.8E-18 140.0 11.0 78 348-426 3-84 (352)
9 KOG0125 Ataxin 2-binding prote 99.4 1.9E-13 4.2E-18 140.7 8.7 80 346-426 94-175 (376)
10 KOG0148 Apoptosis-promoting RN 99.4 2.5E-13 5.4E-18 137.1 9.3 162 347-543 61-228 (321)
11 PF00076 RRM_1: RNA recognitio 99.4 3.5E-13 7.6E-18 106.9 8.3 67 351-418 1-70 (70)
12 TIGR01628 PABP-1234 polyadenyl 99.4 8.2E-13 1.8E-17 146.3 10.7 83 346-429 283-368 (562)
13 TIGR01628 PABP-1234 polyadenyl 99.4 2.3E-12 5E-17 142.8 14.1 83 345-428 175-264 (562)
14 TIGR01659 sex-lethal sex-letha 99.4 9.2E-13 2E-17 139.3 10.4 80 345-425 104-187 (346)
15 PLN03120 nucleic acid binding 99.4 1.3E-12 2.8E-17 132.6 10.5 76 348-425 4-80 (260)
16 KOG0148 Apoptosis-promoting RN 99.4 1.4E-12 3E-17 131.8 8.8 147 272-426 82-239 (321)
17 KOG0113 U1 small nuclear ribon 99.3 6.8E-12 1.5E-16 128.2 10.4 87 338-425 91-181 (335)
18 TIGR01622 SF-CC1 splicing fact 99.3 9E-12 1.9E-16 134.1 11.9 78 346-424 184-265 (457)
19 PLN03213 repressor of silencin 99.3 6.1E-12 1.3E-16 135.0 9.2 78 347-425 9-88 (759)
20 TIGR01622 SF-CC1 splicing fact 99.3 2.4E-11 5.3E-16 130.7 12.9 78 346-425 87-168 (457)
21 KOG0111 Cyclophilin-type pepti 99.3 2E-12 4.4E-17 127.5 4.0 81 346-427 8-92 (298)
22 PF14259 RRM_6: RNA recognitio 99.3 1.6E-11 3.6E-16 98.8 8.2 67 351-418 1-70 (70)
23 smart00362 RRM_2 RNA recogniti 99.3 3.7E-11 8.1E-16 93.3 9.6 70 350-420 1-72 (72)
24 TIGR01645 half-pint poly-U bin 99.3 1.7E-11 3.6E-16 137.6 10.4 76 347-423 106-185 (612)
25 PLN03121 nucleic acid binding 99.2 3.3E-11 7.1E-16 121.1 10.7 77 346-424 3-80 (243)
26 KOG0107 Alternative splicing f 99.2 2.2E-11 4.7E-16 116.8 8.0 79 347-427 9-87 (195)
27 COG0724 RNA-binding proteins ( 99.2 6.6E-11 1.4E-15 112.6 10.1 76 348-424 115-194 (306)
28 KOG4205 RNA-binding protein mu 99.2 2E-11 4.2E-16 127.4 6.1 82 347-430 96-181 (311)
29 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1E-10 2.2E-15 127.4 11.8 79 346-425 293-375 (509)
30 smart00360 RRM RNA recognition 99.2 1.1E-10 2.4E-15 90.1 8.5 67 353-420 1-71 (71)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 1.1E-10 2.3E-15 128.1 11.2 80 345-426 272-352 (481)
32 KOG0122 Translation initiation 99.2 7.3E-11 1.6E-15 118.0 8.9 78 347-425 188-269 (270)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 1.2E-10 2.6E-15 127.7 10.8 76 347-425 1-78 (481)
34 TIGR01648 hnRNP-R-Q heterogene 99.1 1.6E-10 3.4E-15 129.3 11.2 78 346-428 231-310 (578)
35 TIGR01648 hnRNP-R-Q heterogene 99.1 1.5E-10 3.3E-15 129.5 10.1 78 346-424 56-137 (578)
36 cd00590 RRM RRM (RNA recogniti 99.1 5E-10 1.1E-14 87.4 9.7 71 350-421 1-74 (74)
37 KOG0147 Transcriptional coacti 99.1 1.2E-10 2.5E-15 126.8 7.9 151 271-429 198-362 (549)
38 PF13893 RRM_5: RNA recognitio 99.1 3E-10 6.4E-15 88.7 8.0 56 366-422 1-56 (56)
39 KOG0131 Splicing factor 3b, su 99.1 1E-10 2.2E-15 112.9 6.3 77 347-424 8-88 (203)
40 KOG4207 Predicted splicing fac 99.1 1.2E-10 2.6E-15 114.3 6.4 76 348-424 13-92 (256)
41 KOG0108 mRNA cleavage and poly 99.0 1.1E-09 2.5E-14 118.7 9.2 83 344-427 13-100 (435)
42 smart00361 RRM_1 RNA recogniti 99.0 1.8E-09 3.9E-14 88.6 7.7 57 363-419 2-69 (70)
43 KOG4205 RNA-binding protein mu 99.0 3.3E-10 7.1E-15 118.3 4.2 81 347-429 5-89 (311)
44 KOG0121 Nuclear cap-binding pr 99.0 1.2E-09 2.6E-14 100.5 6.6 77 346-423 34-114 (153)
45 KOG0117 Heterogeneous nuclear 98.9 1.3E-09 2.9E-14 116.4 7.5 81 344-429 255-335 (506)
46 KOG0117 Heterogeneous nuclear 98.9 5.7E-09 1.2E-13 111.6 11.4 80 344-424 79-163 (506)
47 KOG0124 Polypyrimidine tract-b 98.9 6.2E-10 1.3E-14 116.4 4.1 74 349-423 114-191 (544)
48 KOG0109 RNA-binding protein LA 98.9 1.7E-09 3.7E-14 110.5 7.1 79 345-428 75-153 (346)
49 KOG0114 Predicted RNA-binding 98.9 5.6E-09 1.2E-13 93.1 9.2 79 346-425 16-95 (124)
50 KOG0127 Nucleolar protein fibr 98.9 3.5E-09 7.6E-14 115.3 8.5 81 348-429 117-200 (678)
51 KOG0127 Nucleolar protein fibr 98.9 1.2E-08 2.6E-13 111.3 12.3 80 349-429 293-382 (678)
52 KOG0123 Polyadenylate-binding 98.9 7.1E-09 1.5E-13 110.8 10.1 160 351-547 79-240 (369)
53 KOG0126 Predicted RNA-binding 98.9 4.1E-10 8.9E-15 108.7 -0.2 77 346-423 33-113 (219)
54 TIGR01642 U2AF_lg U2 snRNP aux 98.8 1E-08 2.2E-13 111.8 9.9 75 345-423 172-258 (509)
55 KOG0145 RNA-binding protein EL 98.8 1.1E-08 2.3E-13 103.5 8.8 76 349-425 279-358 (360)
56 KOG0145 RNA-binding protein EL 98.8 2.2E-08 4.8E-13 101.3 9.5 83 345-428 38-124 (360)
57 KOG0132 RNA polymerase II C-te 98.8 1.1E-08 2.4E-13 115.1 7.7 80 347-429 420-499 (894)
58 KOG0131 Splicing factor 3b, su 98.8 1.1E-08 2.3E-13 99.1 6.2 84 346-430 94-182 (203)
59 KOG0144 RNA-binding protein CU 98.7 2.2E-08 4.7E-13 106.9 8.1 82 346-428 32-120 (510)
60 KOG0130 RNA-binding protein RB 98.7 1.6E-08 3.4E-13 94.0 5.6 77 350-427 74-154 (170)
61 KOG0109 RNA-binding protein LA 98.7 1.7E-08 3.8E-13 103.3 6.2 78 349-431 3-80 (346)
62 KOG0105 Alternative splicing f 98.7 3.3E-08 7.2E-13 96.0 6.7 79 346-425 4-83 (241)
63 KOG0146 RNA-binding protein ET 98.6 2.4E-08 5.2E-13 101.3 4.7 84 343-427 280-367 (371)
64 KOG4206 Spliceosomal protein s 98.6 9.1E-08 2E-12 95.1 7.8 84 347-431 8-96 (221)
65 KOG0146 RNA-binding protein ET 98.6 6.7E-08 1.5E-12 98.2 6.8 91 345-436 16-112 (371)
66 KOG0415 Predicted peptidyl pro 98.5 1.4E-07 3.1E-12 98.8 6.8 82 343-425 234-319 (479)
67 KOG0123 Polyadenylate-binding 98.5 1.7E-07 3.8E-12 100.3 7.0 82 345-427 267-351 (369)
68 KOG4661 Hsp27-ERE-TATA-binding 98.5 1.5E-07 3.3E-12 103.1 6.5 77 347-424 404-484 (940)
69 KOG4212 RNA-binding protein hn 98.5 4E-07 8.6E-12 97.5 8.7 78 346-424 42-123 (608)
70 KOG0110 RNA-binding protein (R 98.3 1.2E-06 2.5E-11 98.5 8.2 73 350-423 517-596 (725)
71 KOG0124 Polypyrimidine tract-b 98.3 1.1E-06 2.4E-11 92.5 7.0 77 347-424 209-289 (544)
72 KOG0110 RNA-binding protein (R 98.3 6.5E-07 1.4E-11 100.5 4.5 79 348-427 613-695 (725)
73 KOG4208 Nucleolar RNA-binding 98.3 1.7E-06 3.7E-11 85.3 6.9 79 346-425 47-130 (214)
74 KOG0151 Predicted splicing reg 98.2 2.5E-06 5.4E-11 95.8 8.7 79 345-424 171-256 (877)
75 KOG0116 RasGAP SH3 binding pro 98.2 2.2E-06 4.7E-11 93.1 7.7 74 349-424 289-366 (419)
76 KOG4454 RNA binding protein (R 98.2 4.3E-07 9.4E-12 90.3 2.0 79 345-425 6-87 (267)
77 KOG0106 Alternative splicing f 98.0 3.8E-06 8.3E-11 83.9 4.1 72 349-425 2-73 (216)
78 KOG4212 RNA-binding protein hn 98.0 1.1E-05 2.3E-10 86.9 6.8 73 346-421 534-607 (608)
79 KOG0533 RRM motif-containing p 97.8 5.3E-05 1.1E-09 77.2 8.2 78 346-424 81-161 (243)
80 KOG0226 RNA-binding proteins [ 97.7 2.5E-05 5.3E-10 79.4 4.0 78 348-426 190-271 (290)
81 KOG4209 Splicing factor RNPS1, 97.7 3.8E-05 8.2E-10 77.7 5.4 78 346-425 99-180 (231)
82 KOG0120 Splicing factor U2AF, 97.7 0.00016 3.4E-09 80.1 9.7 191 347-555 288-492 (500)
83 KOG4660 Protein Mei2, essentia 97.7 2.6E-05 5.6E-10 86.0 3.3 72 345-418 72-143 (549)
84 KOG2135 Proteins containing th 97.5 0.00037 7.9E-09 76.0 8.8 77 347-426 371-447 (526)
85 KOG1190 Polypyrimidine tract-b 97.4 0.00052 1.1E-08 73.8 8.3 77 348-425 297-373 (492)
86 PF00642 zf-CCCH: Zinc finger 97.3 5.4E-05 1.2E-09 51.9 -0.0 23 192-214 3-26 (27)
87 KOG1457 RNA binding protein (c 97.3 0.0011 2.3E-08 66.8 8.7 85 347-432 33-125 (284)
88 KOG1548 Transcription elongati 97.2 0.0011 2.3E-08 70.2 7.8 75 348-423 134-219 (382)
89 KOG1855 Predicted RNA-binding 97.1 0.00051 1.1E-08 74.2 4.7 120 287-409 164-308 (484)
90 KOG4211 Splicing factor hnRNP- 97.0 0.0019 4.2E-08 70.8 8.4 77 346-425 8-86 (510)
91 KOG0147 Transcriptional coacti 96.8 0.00054 1.2E-08 75.8 2.1 75 348-424 179-257 (549)
92 KOG4210 Nuclear localization s 96.8 0.0007 1.5E-08 70.5 2.6 81 347-429 183-268 (285)
93 KOG0106 Alternative splicing f 96.8 0.0011 2.3E-08 66.6 3.8 69 348-421 99-167 (216)
94 smart00356 ZnF_C3H1 zinc finge 96.8 0.0007 1.5E-08 45.4 1.7 23 192-214 4-26 (27)
95 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0039 8.4E-08 49.3 5.8 52 349-404 2-53 (53)
96 KOG1548 Transcription elongati 96.6 0.015 3.2E-07 61.9 10.5 92 334-426 252-353 (382)
97 PF04059 RRM_2: RNA recognitio 96.6 0.012 2.6E-07 52.3 8.2 78 349-427 2-89 (97)
98 COG5175 MOT2 Transcriptional r 96.5 0.0053 1.2E-07 64.9 6.9 79 347-425 113-203 (480)
99 PF11608 Limkain-b1: Limkain b 96.5 0.0081 1.8E-07 52.4 6.4 70 349-425 3-77 (90)
100 PF08777 RRM_3: RNA binding mo 96.4 0.0059 1.3E-07 54.7 5.8 55 350-407 3-57 (105)
101 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.016 3.4E-07 51.8 8.1 71 349-424 7-91 (100)
102 KOG0129 Predicted RNA-binding 96.4 0.012 2.7E-07 65.0 8.9 79 343-423 365-452 (520)
103 KOG4211 Splicing factor hnRNP- 96.2 0.013 2.9E-07 64.5 8.0 75 347-423 102-180 (510)
104 KOG0120 Splicing factor U2AF, 96.2 0.011 2.5E-07 65.7 7.5 62 364-425 424-492 (500)
105 KOG1995 Conserved Zn-finger pr 95.9 0.0098 2.1E-07 63.3 4.9 83 345-428 63-157 (351)
106 KOG0129 Predicted RNA-binding 95.8 0.019 4.2E-07 63.5 6.9 163 345-531 256-430 (520)
107 KOG4206 Spliceosomal protein s 95.8 0.036 7.8E-07 55.9 8.2 78 344-423 142-220 (221)
108 KOG1457 RNA binding protein (c 95.7 0.011 2.5E-07 59.6 4.1 67 345-412 207-273 (284)
109 KOG1456 Heterogeneous nuclear 95.6 0.048 1E-06 58.6 8.6 79 346-425 285-363 (494)
110 PF14608 zf-CCCH_2: Zinc finge 95.4 0.0079 1.7E-07 38.2 1.4 19 194-214 1-19 (19)
111 PF08952 DUF1866: Domain of un 95.4 0.055 1.2E-06 51.5 7.3 77 342-424 21-106 (146)
112 smart00517 PolyA C-terminal do 95.3 0.017 3.7E-07 47.8 3.4 51 8-61 11-61 (64)
113 PF00658 PABP: Poly-adenylate 95.3 0.011 2.3E-07 49.9 2.2 50 8-60 22-71 (72)
114 KOG4849 mRNA cleavage factor I 95.0 0.023 5.1E-07 60.4 4.0 74 350-424 82-161 (498)
115 KOG2314 Translation initiation 94.6 0.043 9.2E-07 61.5 4.9 73 349-423 59-142 (698)
116 KOG3152 TBP-binding protein, a 94.1 0.029 6.3E-07 57.6 2.3 68 348-416 74-157 (278)
117 KOG2202 U2 snRNP splicing fact 94.0 0.024 5.2E-07 58.1 1.4 59 364-422 83-145 (260)
118 KOG1190 Polypyrimidine tract-b 93.9 0.13 2.8E-06 56.0 6.6 78 345-423 411-489 (492)
119 KOG2185 Predicted RNA-processi 93.9 0.025 5.3E-07 61.3 1.3 28 191-218 139-166 (486)
120 KOG1677 CCCH-type Zn-finger pr 93.4 0.042 9.2E-07 57.6 2.0 27 188-214 173-200 (332)
121 KOG1996 mRNA splicing factor [ 93.1 0.22 4.7E-06 52.3 6.6 62 363-424 300-366 (378)
122 KOG4307 RNA binding protein RB 92.8 0.12 2.5E-06 59.4 4.5 81 345-426 431-515 (944)
123 KOG2891 Surface glycoprotein [ 91.8 0.11 2.4E-06 54.0 2.6 39 345-383 146-195 (445)
124 KOG1456 Heterogeneous nuclear 90.9 1.3 2.9E-05 48.0 9.5 77 348-425 120-199 (494)
125 PF10309 DUF2414: Protein of u 90.2 1.3 2.9E-05 36.5 6.9 55 348-407 5-62 (62)
126 KOG2068 MOT2 transcription fac 90.1 0.1 2.2E-06 55.4 0.5 78 349-426 78-164 (327)
127 KOG0112 Large RNA-binding prot 89.8 0.48 1E-05 55.9 5.5 84 344-430 451-536 (975)
128 KOG2193 IGF-II mRNA-binding pr 89.4 0.31 6.7E-06 53.3 3.4 79 349-430 2-81 (584)
129 KOG4285 Mitotic phosphoprotein 88.7 0.91 2E-05 48.0 6.1 74 350-428 199-273 (350)
130 PF04847 Calcipressin: Calcipr 88.6 1.3 2.9E-05 43.7 7.0 63 362-426 8-72 (184)
131 KOG0128 RNA-binding protein SA 88.4 0.057 1.2E-06 62.9 -3.1 77 349-426 668-748 (881)
132 KOG0112 Large RNA-binding prot 88.2 0.11 2.3E-06 61.1 -1.1 79 345-424 369-450 (975)
133 KOG0128 RNA-binding protein SA 87.2 0.28 6E-06 57.5 1.4 76 348-424 736-814 (881)
134 KOG1365 RNA-binding protein Fu 87.1 0.32 6.9E-06 52.7 1.8 72 350-423 163-241 (508)
135 KOG0105 Alternative splicing f 87.1 2.9 6.3E-05 41.8 8.1 68 350-421 117-186 (241)
136 KOG1595 CCCH-type Zn-finger pr 86.7 0.47 1E-05 53.3 2.8 35 180-214 224-258 (528)
137 PF12872 OST-HTH: OST-HTH/LOTU 86.6 0.9 2E-05 37.1 3.8 68 243-321 2-72 (74)
138 KOG0115 RNA-binding protein p5 86.4 0.6 1.3E-05 48.3 3.2 74 349-423 32-112 (275)
139 KOG4307 RNA binding protein RB 86.2 2.1 4.5E-05 49.7 7.5 73 348-421 867-943 (944)
140 KOG2416 Acinus (induces apopto 85.8 0.9 2E-05 51.7 4.4 78 344-424 440-521 (718)
141 KOG4676 Splicing factor, argin 85.0 1.4 3E-05 48.1 5.2 75 349-425 8-89 (479)
142 PF15023 DUF4523: Protein of u 83.9 4.3 9.3E-05 39.1 7.4 74 345-423 83-160 (166)
143 KOG1039 Predicted E3 ubiquitin 83.2 0.43 9.2E-06 51.4 0.5 22 193-214 9-30 (344)
144 KOG1365 RNA-binding protein Fu 82.3 1.5 3.3E-05 47.7 4.2 76 348-424 280-361 (508)
145 KOG2253 U1 snRNP complex, subu 81.5 1.5 3.3E-05 50.4 4.1 98 315-422 11-108 (668)
146 PF10650 zf-C3H1: Putative zin 80.6 0.88 1.9E-05 30.6 1.1 19 194-213 2-21 (23)
147 KOG1040 Polyadenylation factor 78.9 0.99 2.1E-05 48.3 1.4 23 192-214 105-128 (325)
148 COG5084 YTH1 Cleavage and poly 74.6 1.7 3.6E-05 45.8 1.7 23 192-214 134-157 (285)
149 KOG2494 C3H1-type Zn-finger pr 73.0 1.3 2.8E-05 47.3 0.4 23 192-214 37-60 (331)
150 KOG4210 Nuclear localization s 71.9 2.2 4.7E-05 44.9 1.8 79 347-426 87-169 (285)
151 PF08675 RNA_bind: RNA binding 70.2 17 0.00036 32.1 6.4 55 348-408 9-63 (87)
152 PF03880 DbpA: DbpA RNA bindin 68.1 11 0.00025 31.3 5.0 59 359-422 11-74 (74)
153 KOG1763 Uncharacterized conser 66.6 2.3 5E-05 44.9 0.6 23 192-214 92-114 (343)
154 KOG1492 C3H1-type Zn-finger pr 65.6 2.6 5.6E-05 43.0 0.8 22 193-214 207-229 (377)
155 KOG1040 Polyadenylation factor 64.2 3.9 8.6E-05 43.8 1.9 26 189-214 74-99 (325)
156 KOG1677 CCCH-type Zn-finger pr 62.5 3.6 7.8E-05 43.2 1.2 27 188-214 128-156 (332)
157 PF03467 Smg4_UPF3: Smg-4/UPF3 53.4 14 0.00031 36.0 3.6 66 348-414 7-82 (176)
158 PF07576 BRAP2: BRCA1-associat 53.1 70 0.0015 29.2 7.7 66 348-414 13-81 (110)
159 KOG4454 RNA binding protein (R 47.9 3.7 8E-05 42.0 -1.5 64 348-412 80-150 (267)
160 KOG2591 c-Mpl binding protein, 47.5 35 0.00075 39.2 5.7 67 348-418 174-245 (684)
161 KOG4574 RNA-binding protein (c 47.1 14 0.00031 44.0 2.8 78 344-424 294-373 (1007)
162 KOG1492 C3H1-type Zn-finger pr 42.9 11 0.00025 38.5 1.0 22 192-214 261-282 (377)
163 COG5063 CTH1 CCCH-type Zn-fing 40.8 14 0.00031 39.4 1.4 27 188-214 270-297 (351)
164 COG5084 YTH1 Cleavage and poly 38.0 16 0.00035 38.6 1.3 25 190-214 102-126 (285)
165 KOG2494 C3H1-type Zn-finger pr 35.6 17 0.00038 39.0 1.1 28 186-214 65-92 (331)
166 COG5152 Uncharacterized conser 35.1 15 0.00033 37.0 0.5 24 191-214 140-164 (259)
167 KOG2318 Uncharacterized conser 33.5 1.2E+02 0.0027 35.2 7.2 72 345-417 171-298 (650)
168 PF11767 SET_assoc: Histone ly 33.3 2.8E+02 0.0061 23.2 7.6 56 359-419 10-65 (66)
169 KOG0804 Cytoplasmic Zn-finger 26.8 1.6E+02 0.0036 33.2 6.7 66 348-414 74-142 (493)
170 PF15513 DUF4651: Domain of un 26.5 97 0.0021 25.8 3.7 18 364-381 9-26 (62)
171 KOG3088 Secretory carrier memb 26.3 55 0.0012 34.9 2.9 25 464-488 66-92 (313)
172 COG5252 Uncharacterized conser 25.5 26 0.00056 36.3 0.3 22 193-214 86-107 (299)
173 KOG2202 U2 snRNP splicing fact 24.5 35 0.00076 35.6 1.1 28 187-214 147-174 (260)
174 KOG4660 Protein Mei2, essentia 24.2 1.5E+02 0.0032 34.2 5.9 77 350-427 390-475 (549)
175 PF03468 XS: XS domain; Inter 21.4 60 0.0013 29.8 1.8 44 361-405 29-75 (116)
176 KOG2333 Uncharacterized conser 21.2 61 0.0013 36.9 2.2 26 194-219 116-142 (614)
177 KOG1039 Predicted E3 ubiquitin 21.0 48 0.0011 36.0 1.3 26 189-214 246-273 (344)
178 KOG1813 Predicted E3 ubiquitin 20.6 39 0.00084 36.1 0.5 26 189-214 183-209 (313)
No 1
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.5e-15 Score=156.99 Aligned_cols=76 Identities=25% Similarity=0.397 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhC-CCeEEcCeEEEEeeccc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVLVKPYRE 424 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~m-ng~~i~GR~V~Vk~A~~ 424 (570)
...++||||+| ...++|.+|+++|.+||+|+.|++.. .+|+|||+|.+.+.|+.|.++. |...|+|.+|+|.|..+
T Consensus 226 ~~I~tLyIg~l-~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGL-NDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEeccc-ccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 34679999999 77999999999999999999999998 8889999999999999988875 78999999999999887
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.61 E-value=3.3e-15 Score=139.53 Aligned_cols=85 Identities=18% Similarity=0.315 Sum_probs=77.6
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 008298 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~ 418 (570)
+.....++|||++| ++++||++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||++.|+|++|+
T Consensus 29 ~~~~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 29 SLRLMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred cccCCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33445779999999 999999999999999999999999986 6899999999999999999999999999999999
Q ss_pred Eeeccccccc
Q 008298 419 VKPYREKSRL 428 (570)
Q Consensus 419 Vk~A~~K~k~ 428 (570)
|.++.++...
T Consensus 108 V~~a~~~~~~ 117 (144)
T PLN03134 108 VNPANDRPSA 117 (144)
T ss_pred EEeCCcCCCC
Confidence 9999876543
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.52 E-value=4.9e-14 Score=145.97 Aligned_cols=80 Identities=20% Similarity=0.198 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
...+|||+|| ++++++++|+++|++||.|++|+|++| ++||||||+|.+.++|.+|++.|||..|+||.|+|.++
T Consensus 268 ~~~~lfV~NL-~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 268 AGYCIFVYNL-SPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3458999999 899999999999999999999999986 58999999999999999999999999999999999999
Q ss_pred ccccc
Q 008298 423 REKSR 427 (570)
Q Consensus 423 ~~K~k 427 (570)
..|.+
T Consensus 347 ~~~~~ 351 (352)
T TIGR01661 347 TNKAY 351 (352)
T ss_pred cCCCC
Confidence 88764
No 4
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=2e-14 Score=151.97 Aligned_cols=149 Identities=23% Similarity=0.358 Sum_probs=105.3
Q ss_pred HHHhhccchhcccccccccccccCCccHHHHHHHhhhccccccCCC------CCcceecccccccccccCCCCCCCCCCC
Q 008298 272 YYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPH------GQHSVILAEDVPKYLEYSGEKSDPGGIV 345 (570)
Q Consensus 272 yf~kyG~~l~~~~~~~~sqR~~k~G~s~~kll~rl~n~i~lidr~~------GQ~~vvl~eda~K~~~~r~dr~d~g~~~ 345 (570)
+||+||-+.+..-.+..+++ ..+||=+.++-.|- ...+.|.-.| |.+..|.. ||.+...+| .
T Consensus 54 lFe~yg~V~einl~kDk~t~-~s~gcCFv~~~trk-~a~~a~~Alhn~ktlpG~~~pvqv----k~Ad~E~er------~ 121 (510)
T KOG0144|consen 54 LFEKYGNVYEINLIKDKSTG-QSKGCCFVKYYTRK-EADEAINALHNQKTLPGMHHPVQV----KYADGERER------I 121 (510)
T ss_pred HHHHhCceeEEEeecccccC-cccceEEEEeccHH-HHHHHHHHhhcccccCCCCcceee----cccchhhhc------c
Confidence 49999999998877777776 45666333222211 1111111111 22222211 222221112 1
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeE-E--cCeEEEE
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHF-V--CGARVLV 419 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~-i--~GR~V~V 419 (570)
...+|||||-| +..+||.+|+++|++||.|++|+|++| .+||||||+|.+.|.|..|++.||+.. + |...+.|
T Consensus 122 ~~e~KLFvg~l-sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGML-SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhc-cccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 55789999999 999999999999999999999999996 899999999999999999999999844 3 5679999
Q ss_pred eeccccccchhhhh
Q 008298 420 KPYREKSRLVDRKY 433 (570)
Q Consensus 420 k~A~~K~k~~~rk~ 433 (570)
+||.+++.+..++.
T Consensus 201 kFADtqkdk~~~~l 214 (510)
T KOG0144|consen 201 KFADTQKDKDGKRL 214 (510)
T ss_pred EecccCCCchHHHH
Confidence 99988776655543
No 5
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=4e-14 Score=140.44 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
...|||||+| .|.++.+.|++||++||+|+++.|+.| ++||||||||.+.+.|.+|++. ...+|+||+..|+.|
T Consensus 11 ~~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 3569999999 999999999999999999999999997 8999999999999999999999 678899999999887
Q ss_pred cc
Q 008298 423 RE 424 (570)
Q Consensus 423 ~~ 424 (570)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 54
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.48 E-value=2.6e-13 Score=143.42 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcC--eEEEEe
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVK 420 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~G--R~V~Vk 420 (570)
...+|||++| ++.+||++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||+..+.| +.|+|+
T Consensus 192 ~~~~lfV~nL-p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 192 KDTNLYVTNL-PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred ccceeEEeCC-CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 3568999999 999999999999999999999999986 578999999999999999999999999977 689999
Q ss_pred eccccccc
Q 008298 421 PYREKSRL 428 (570)
Q Consensus 421 ~A~~K~k~ 428 (570)
+++++.+.
T Consensus 271 ~a~~~~~~ 278 (346)
T TIGR01659 271 LAEEHGKA 278 (346)
T ss_pred ECCccccc
Confidence 99876554
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.45 E-value=4.3e-13 Score=150.12 Aligned_cols=79 Identities=16% Similarity=0.300 Sum_probs=74.1
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
..++|||++| +.++++++|+++|+.||+|++|+|++| ++||||||+|.+.++|.+|++.||+..|+|+.|+|.++
T Consensus 203 ~~~rLfVgnL-p~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecC-CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 4579999999 999999999999999999999999986 58999999999999999999999999999999999998
Q ss_pred cccc
Q 008298 423 REKS 426 (570)
Q Consensus 423 ~~K~ 426 (570)
..++
T Consensus 282 i~pP 285 (612)
T TIGR01645 282 VTPP 285 (612)
T ss_pred CCCc
Confidence 8643
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.45 E-value=3.1e-13 Score=139.97 Aligned_cols=78 Identities=18% Similarity=0.333 Sum_probs=73.7
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
..+|||++| +.++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|.|+.|+|.+++
T Consensus 3 ~~~l~V~nL-p~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYL-PQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCC-CCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 579999999 999999999999999999999999986 589999999999999999999999999999999999987
Q ss_pred ccc
Q 008298 424 EKS 426 (570)
Q Consensus 424 ~K~ 426 (570)
++.
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 654
No 9
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.9e-13 Score=140.71 Aligned_cols=80 Identities=24% Similarity=0.332 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
...++|+|.|| ++.+.|-||+.+|.+||+|.+|.|+.. .+||||||||++.++|++|-+++++..|.||+|+|..|.
T Consensus 94 ~~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 94 DTPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 44679999999 999999999999999999999999996 689999999999999999999999999999999999998
Q ss_pred ccc
Q 008298 424 EKS 426 (570)
Q Consensus 424 ~K~ 426 (570)
.+-
T Consensus 173 arV 175 (376)
T KOG0125|consen 173 ARV 175 (376)
T ss_pred hhh
Confidence 763
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.5e-13 Score=137.08 Aligned_cols=162 Identities=15% Similarity=0.226 Sum_probs=115.9
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
..--+|||.| ...++.++||+.|.+||+|.+++|++| ++||||||.|-+.++|+.||..|||+.|++|.|+-.||
T Consensus 61 ~hfhvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 61 QHFHVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred cceeEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 3558999999 999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred cccccchhhhhhhhhcCC-CCCCCCCCCCccccccchhcccchHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 008298 423 REKSRLVDRKYVEKMQHP-MFCSLHFTDGDTELHTMPRACNNSRLLRKQLMEEHEQAIELERRRLSEMQLACKPMNHHSY 501 (570)
Q Consensus 423 ~~K~k~~~rk~~~~~~~~-~~~~p~~~~~d~dl~~~aR~~~ner~lrrk~~E~~~q~lE~q~~~l~~~q~~~k~~~~~~~ 501 (570)
..|......+.. .+. .+.....++.--.--.++.. -.+.+||+ +.+-
T Consensus 140 TRKp~e~n~~~l---tfdeV~NQssp~NtsVY~G~I~~~-lte~~mr~----------------------------~Fs~ 187 (321)
T KOG0148|consen 140 TRKPSEMNGKPL---TFDEVYNQSSPDNTSVYVGNIASG-LTEDLMRQ----------------------------TFSP 187 (321)
T ss_pred ccCccccCCCCc---cHHHHhccCCCCCceEEeCCcCcc-ccHHHHHH----------------------------hccc
Confidence 988733222210 000 00000001111111111111 11122221 3445
Q ss_pred CCCCcccccccC-CCcccCCCCchhhhhhhhhhhcCCCCCcCc
Q 008298 502 FGYSMDELQVSE-APAEQGDFPSAERFNYLLDVLNNGSTSEDQ 543 (570)
Q Consensus 502 ~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 543 (570)
|| .|.|++|+. ++.+++.|-.-|.+-|++-.+ |++.-++.
T Consensus 188 fG-~I~EVRvFk~qGYaFVrF~tkEaAahAIv~m-Nntei~G~ 228 (321)
T KOG0148|consen 188 FG-PIQEVRVFKDQGYAFVRFETKEAAAHAIVQM-NNTEIGGQ 228 (321)
T ss_pred CC-cceEEEEecccceEEEEecchhhHHHHHHHh-cCceeCce
Confidence 66 688888876 889999999999999999888 44554443
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.44 E-value=3.5e-13 Score=106.94 Aligned_cols=67 Identities=21% Similarity=0.474 Sum_probs=64.0
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 008298 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (570)
Q Consensus 351 IfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~ 418 (570)
|||+|| +.++|+++|+++|++||.|..++++.+ +++|||||+|.+.++|++|++.+++..++|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999 999999999999999999999999884 7799999999999999999999999999999885
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.40 E-value=8.2e-13 Score=146.34 Aligned_cols=83 Identities=20% Similarity=0.351 Sum_probs=76.9
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
....+|||+|| ++++|+++|+++|++||.|++|+|+.| ++||||||+|.+.++|.+|+..||+..|+|+.|.|.+|
T Consensus 283 ~~~~~l~V~nl-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNL-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCC-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 44678999999 999999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred cccccch
Q 008298 423 REKSRLV 429 (570)
Q Consensus 423 ~~K~k~~ 429 (570)
..+....
T Consensus 362 ~~k~~~~ 368 (562)
T TIGR01628 362 QRKEQRR 368 (562)
T ss_pred cCcHHHH
Confidence 8876553
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.40 E-value=2.3e-12 Score=142.82 Aligned_cols=83 Identities=18% Similarity=0.343 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEc----CeEE
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC----GARV 417 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~----GR~V 417 (570)
....++|||++| +.++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|.+|++.+++..|. |+.+
T Consensus 175 ~~~~~~l~V~nl-~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNL-DPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 345678999999 999999999999999999999999986 67999999999999999999999999999 9999
Q ss_pred EEeeccccccc
Q 008298 418 LVKPYREKSRL 428 (570)
Q Consensus 418 ~Vk~A~~K~k~ 428 (570)
.|.++..+.+.
T Consensus 254 ~v~~a~~k~er 264 (562)
T TIGR01628 254 YVGRAQKRAER 264 (562)
T ss_pred EeecccChhhh
Confidence 99998877654
No 14
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.40 E-value=9.2e-13 Score=139.26 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
....++|||++| ++++||++|+++|++||+|++|+|+.| ++||||||+|.++++|++|++.|++..|.+++|+|.
T Consensus 104 ~~~~~~LfVgnL-p~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVNYL-PQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 345789999999 999999999999999999999999986 689999999999999999999999999999999999
Q ss_pred ecccc
Q 008298 421 PYREK 425 (570)
Q Consensus 421 ~A~~K 425 (570)
++++.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98654
No 15
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.39 E-value=1.3e-12 Score=132.59 Aligned_cols=76 Identities=18% Similarity=0.289 Sum_probs=71.1
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccC-CCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecccc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQ-KRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~-sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K 425 (570)
.++|||||| ++.+||++|+++|+.||+|++|+|+.|+ ++|||||+|.++++|+.|+. |++..|+|+.|.|.++..-
T Consensus 4 ~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 579999999 9999999999999999999999999984 78999999999999999996 7999999999999997643
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.4e-12 Score=131.78 Aligned_cols=147 Identities=20% Similarity=0.257 Sum_probs=106.7
Q ss_pred HHHhhccchhcccccccccccccCCccHHHHHHHhhhccccccCCCCCcceeccccccccccc-C--CCCCC--------
Q 008298 272 YYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEY-S--GEKSD-------- 340 (570)
Q Consensus 272 yf~kyG~~l~~~~~~~~sqR~~k~G~s~~kll~rl~n~i~lidr~~GQ~~vvl~eda~K~~~~-r--~dr~d-------- 340 (570)
-|.+||++-.+.-. .+..-.+.+||.+..+..+. +.-+.|+...||- ++....+-... | .+++.
T Consensus 82 aF~pFGevS~akvi-rD~~T~KsKGYgFVSf~~k~-dAEnAI~~MnGqW---lG~R~IRTNWATRKp~e~n~~~ltfdeV 156 (321)
T KOG0148|consen 82 AFAPFGEVSDAKVI-RDMNTGKSKGYGFVSFPNKE-DAENAIQQMNGQW---LGRRTIRTNWATRKPSEMNGKPLTFDEV 156 (321)
T ss_pred HhccccccccceEe-ecccCCcccceeEEeccchH-HHHHHHHHhCCee---eccceeeccccccCccccCCCCccHHHH
Confidence 47889998776522 22222345677665555544 5556777777753 22222111110 1 11111
Q ss_pred CCCCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 341 PGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 341 ~g~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
+....+.+.+||||++ ..-+||+++|+.|+.||+|.+|||.+ -+||+||.|++.|.|.+||..||+..|.|..|++.
T Consensus 157 ~NQssp~NtsVY~G~I-~~~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 157 YNQSSPDNTSVYVGNI-ASGLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred hccCCCCCceEEeCCc-CccccHHHHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 1345677889999999 66799999999999999999999998 78999999999999999999999999999999999
Q ss_pred eccccc
Q 008298 421 PYREKS 426 (570)
Q Consensus 421 ~A~~K~ 426 (570)
|-++-.
T Consensus 234 WGKe~~ 239 (321)
T KOG0148|consen 234 WGKEGD 239 (321)
T ss_pred ccccCC
Confidence 987654
No 17
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=6.8e-12 Score=128.17 Aligned_cols=87 Identities=18% Similarity=0.406 Sum_probs=79.8
Q ss_pred CCCCCCCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEc
Q 008298 338 KSDPGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC 413 (570)
Q Consensus 338 r~d~g~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~ 413 (570)
..+..+.+.+.+||||+.| +++++|..|++.|+.||+|+.|+|++| ++||||||+|+++-++..|++...+..|+
T Consensus 91 ~~dp~a~gDPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id 169 (335)
T KOG0113|consen 91 NNDPNAIGDPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID 169 (335)
T ss_pred CCCCcccCCccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec
Confidence 3455677788999999999 999999999999999999999999997 89999999999999999999999999999
Q ss_pred CeEEEEeecccc
Q 008298 414 GARVLVKPYREK 425 (570)
Q Consensus 414 GR~V~Vk~A~~K 425 (570)
|++|.|..-..+
T Consensus 170 grri~VDvERgR 181 (335)
T KOG0113|consen 170 GRRILVDVERGR 181 (335)
T ss_pred CcEEEEEecccc
Confidence 999999875544
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.31 E-value=9e-12 Score=134.07 Aligned_cols=78 Identities=26% Similarity=0.391 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
+..++|||++| +..+|+++|+++|++||.|..|+|+.+ +++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 184 p~~~~l~v~nl-~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 184 PNFLKLYVGNL-HFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 45789999999 899999999999999999999999975 6799999999999999999999999999999999999
Q ss_pred ccc
Q 008298 422 YRE 424 (570)
Q Consensus 422 A~~ 424 (570)
+..
T Consensus 263 a~~ 265 (457)
T TIGR01622 263 AQD 265 (457)
T ss_pred ccC
Confidence 764
No 19
>PLN03213 repressor of silencing 3; Provisional
Probab=99.30 E-value=6.1e-12 Score=134.97 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCH--HHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFA--ETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~--e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
...+|||||| ++.+|+++|+..|+.||.|.+|.|++...||||||+|... .++.+|++.||+..+.||.|+|..|++
T Consensus 9 ~gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 9 GGVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 3468999999 9999999999999999999999999877799999999987 789999999999999999999999987
Q ss_pred c
Q 008298 425 K 425 (570)
Q Consensus 425 K 425 (570)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 3
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.28 E-value=2.4e-11 Score=130.73 Aligned_cols=78 Identities=23% Similarity=0.371 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...++|||++| ++.+++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|.+|+. |++..+.|+.|.|..
T Consensus 87 ~~~~~l~V~nl-p~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 87 RDDRTVFVLQL-ALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred cCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 34679999999 899999999999999999999999986 679999999999999999997 699999999999988
Q ss_pred cccc
Q 008298 422 YREK 425 (570)
Q Consensus 422 A~~K 425 (570)
+...
T Consensus 165 ~~~~ 168 (457)
T TIGR01622 165 SQAE 168 (457)
T ss_pred cchh
Confidence 6543
No 21
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2e-12 Score=127.45 Aligned_cols=81 Identities=26% Similarity=0.390 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
-..|+||||+| ...+||.-|...|-.||.|.+|+||.| ++||||||+|...|+|.+|+..||..+++||.|+|..
T Consensus 8 ~~KrtlYVGGl-adeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGL-ADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccc-hHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34689999999 788999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred cccccc
Q 008298 422 YREKSR 427 (570)
Q Consensus 422 A~~K~k 427 (570)
|+|..-
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 988643
No 22
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.27 E-value=1.6e-11 Score=98.84 Aligned_cols=67 Identities=36% Similarity=0.568 Sum_probs=61.0
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 008298 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (570)
Q Consensus 351 IfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~ 418 (570)
|||+|| ++.+++++|+++|+.||.|..|++..+ +.+|+|||+|.+.++|++|++..++..|+|+.|+
T Consensus 1 v~i~nl-p~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNL-PPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESS-TTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999 889999999999999999999999985 3589999999999999999999989999999885
No 23
>smart00362 RRM_2 RNA recognition motif.
Probab=99.26 E-value=3.7e-11 Score=93.30 Aligned_cols=70 Identities=29% Similarity=0.503 Sum_probs=65.0
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 350 tIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
+|||++| +..+++++|+++|.+||+|..+++..+ .++|+|||+|.+.+.|+.|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999 889999999999999999999999885 367999999999999999999999999999999874
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.26 E-value=1.7e-11 Score=137.57 Aligned_cols=76 Identities=18% Similarity=0.360 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
..++||||+| ++.++|++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||+..|+||.|+|.+.
T Consensus 106 ~~~rLfVGnL-p~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCC-CCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4579999999 999999999999999999999999986 68999999999999999999999999999999999864
Q ss_pred c
Q 008298 423 R 423 (570)
Q Consensus 423 ~ 423 (570)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 3
No 25
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.24 E-value=3.3e-11 Score=121.07 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
+...+|||+|| ++.+||++|+++|+.||+|++|+|+.| +.+|||||+|.+++.|+.|+. |+|..|.++.|.|.++..
T Consensus 3 ~~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 3 PGGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 34579999999 999999999999999999999999997 677999999999999999995 699999999999998764
No 26
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=2.2e-11 Score=116.76 Aligned_cols=79 Identities=24% Similarity=0.436 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccccc
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 426 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K~ 426 (570)
...+|||||| ...+++.+|+..|+.||+|..|.|.. ...|||||+|+++-+|+.|+..|++..|||.+|+|....-+.
T Consensus 9 ~~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccC-CCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 3679999999 99999999999999999999999987 689999999999999999999999999999999999987655
Q ss_pred c
Q 008298 427 R 427 (570)
Q Consensus 427 k 427 (570)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 4
No 27
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.20 E-value=6.6e-11 Score=112.56 Aligned_cols=76 Identities=26% Similarity=0.423 Sum_probs=72.5
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
..+||||+| ++.+|+++|+++|.+||.|..|+|+.| ++||||||+|.+.++|..|++.+++..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 689999999 999999999999999999999999886 789999999999999999999999999999999999976
Q ss_pred c
Q 008298 424 E 424 (570)
Q Consensus 424 ~ 424 (570)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 28
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.19 E-value=2e-11 Score=127.35 Aligned_cols=82 Identities=32% Similarity=0.457 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
.+++||||+| +.+++|+++++||.+||.|.++.|++| +.||||||+|..++.+++++.. ..|.|+|+.|.|+.|
T Consensus 96 ~tkkiFvGG~-~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 96 RTKKIFVGGL-PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeEEEecCc-CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeec
Confidence 5789999999 999999999999999999999999997 7899999999999999999988 899999999999999
Q ss_pred cccccchh
Q 008298 423 REKSRLVD 430 (570)
Q Consensus 423 ~~K~k~~~ 430 (570)
.+|.....
T Consensus 174 ~pk~~~~~ 181 (311)
T KOG4205|consen 174 IPKEVMQS 181 (311)
T ss_pred cchhhccc
Confidence 99876543
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.18 E-value=1e-10 Score=127.41 Aligned_cols=79 Identities=11% Similarity=0.153 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...++|||+|| ++.+|+++|+++|++||.|..+.|+.+ +++|||||+|.+.+.|..|++.||+..|+|+.|.|.+
T Consensus 293 ~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 293 DSKDRIYIGNL-PLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34679999999 999999999999999999999999885 5899999999999999999999999999999999999
Q ss_pred cccc
Q 008298 422 YREK 425 (570)
Q Consensus 422 A~~K 425 (570)
+...
T Consensus 372 a~~~ 375 (509)
T TIGR01642 372 ACVG 375 (509)
T ss_pred CccC
Confidence 8654
No 30
>smart00360 RRM RNA recognition motif.
Probab=99.18 E-value=1.1e-10 Score=90.14 Aligned_cols=67 Identities=28% Similarity=0.406 Sum_probs=61.6
Q ss_pred EcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 353 LTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 353 Vg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
|++| ++.+++++|+++|++||.|..++|..+ +++|||||+|.+.++|.+|++.+++..++|+.|.|.
T Consensus 1 i~~l-~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNL-PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCC-CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5788 889999999999999999999999885 348999999999999999999999999999999873
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.17 E-value=1.1e-10 Score=128.05 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 345 VAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~-~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
.+.+.+|||+|| ++ .+|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|..|+..||++.|.|+.|+|.+++
T Consensus 272 ~~~~~~l~v~nL-~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 272 GGPGSVLMVSGL-HQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCCEEEEeCC-CCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 356789999999 65 7999999999999999999999986 58999999999999999999999999999999999986
Q ss_pred ccc
Q 008298 424 EKS 426 (570)
Q Consensus 424 ~K~ 426 (570)
.+.
T Consensus 350 ~~~ 352 (481)
T TIGR01649 350 QQN 352 (481)
T ss_pred ccc
Confidence 543
No 32
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=7.3e-11 Score=118.02 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
...+|-|.|| +.+++|++|+++|..||.|..|.|.+| .+||||||+|.+.++|.+||+.|||+-+++-.++|.|+
T Consensus 188 D~~tvRvtNL-sed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNL-SEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecC-ccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4568999999 999999999999999999999999997 79999999999999999999999999999999999999
Q ss_pred ccc
Q 008298 423 REK 425 (570)
Q Consensus 423 ~~K 425 (570)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 886
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.16 E-value=1.2e-10 Score=127.67 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHh--CCCeEEcCeEEEEeeccc
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAK--GNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~--mng~~i~GR~V~Vk~A~~ 424 (570)
++++|||++| ++.+||++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++. +++..|+|+.|.|.++..
T Consensus 1 ps~vv~V~nL-p~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNL-PQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCC-CCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 4689999999 99999999999999999999999997 789999999999999999996 478999999999999875
Q ss_pred c
Q 008298 425 K 425 (570)
Q Consensus 425 K 425 (570)
+
T Consensus 78 ~ 78 (481)
T TIGR01649 78 Q 78 (481)
T ss_pred c
Confidence 4
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.15 E-value=1.6e-10 Score=129.31 Aligned_cols=78 Identities=24% Similarity=0.299 Sum_probs=71.8
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcC--CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKF--GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqF--G~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
...++|||+|| ++.+||++|+++|++| |+|++|+++ ++||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 231 ~~~k~LfVgNL-~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 231 AKVKILYVRNL-MTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccccEEEEeCC-CCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34679999999 9999999999999999 999999885 5799999999999999999999999999999999998
Q ss_pred ccccc
Q 008298 424 EKSRL 428 (570)
Q Consensus 424 ~K~k~ 428 (570)
++.+.
T Consensus 306 p~~~~ 310 (578)
T TIGR01648 306 PVDKK 310 (578)
T ss_pred CCCcc
Confidence 86543
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.13 E-value=1.5e-10 Score=129.47 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEc-CeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~-GR~V~Vk~ 421 (570)
....+|||++| +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnL-p~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKI-PRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCC-CCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34579999999 999999999999999999999999986 78999999999999999999999998885 78888876
Q ss_pred ccc
Q 008298 422 YRE 424 (570)
Q Consensus 422 A~~ 424 (570)
+..
T Consensus 135 S~~ 137 (578)
T TIGR01648 135 SVD 137 (578)
T ss_pred ccc
Confidence 654
No 36
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.12 E-value=5e-10 Score=87.39 Aligned_cols=71 Identities=30% Similarity=0.407 Sum_probs=66.0
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccC---CCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQ---KRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 350 tIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~---sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
+|||++| +..+++++|+++|..||.|..+.+..+. .+|+|||+|.+.+.|..|+..+++..+.|+++.|.+
T Consensus 1 ~i~i~~l-~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNL-PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCC-CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999 8889999999999999999999998853 489999999999999999999999999999999864
No 37
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.11 E-value=1.2e-10 Score=126.82 Aligned_cols=151 Identities=20% Similarity=0.234 Sum_probs=110.6
Q ss_pred hHHHhhccchhcc-cccccccccccCCcc-------HHHHHHHhhhccccccCCCCCcceeccccccccccc-CCCCCCC
Q 008298 271 MYYEKYGKTLQAE-GYLTESQRHGKAGYS-------LTKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEY-SGEKSDP 341 (570)
Q Consensus 271 ~yf~kyG~~l~~~-~~~~~sqR~~k~G~s-------~~kll~rl~n~i~lidr~~GQ~~vvl~eda~K~~~~-r~dr~d~ 341 (570)
.+|...|++..+. ..+.-++|.++.+|. +.-.++ | .-.|..|+..++...++.|-... ...-.+.
T Consensus 198 efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-L-----sGqrllg~pv~vq~sEaeknr~a~~s~a~~~ 271 (549)
T KOG0147|consen 198 EFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-L-----SGQRLLGVPVIVQLSEAEKNRAANASPALQG 271 (549)
T ss_pred HHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-h-----cCCcccCceeEecccHHHHHHHHhccccccc
Confidence 4677889988766 334556777777772 221111 1 12344566677776666654421 1111221
Q ss_pred C-CCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeE
Q 008298 342 G-GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGAR 416 (570)
Q Consensus 342 g-~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~ 416 (570)
+ ..+|-.+ +|||+| .++++|++|+.+|..||.|+.|.++.| +++|||||+|.+.++|++|++.||+.+|-||.
T Consensus 272 k~~~~p~~r-l~vgnL-HfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ 349 (549)
T KOG0147|consen 272 KGFTGPMRR-LYVGNL-HFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRL 349 (549)
T ss_pred cccccchhh-hhhccc-ccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCce
Confidence 2 2333334 999999 999999999999999999999999986 79999999999999999999999999999999
Q ss_pred EEEeeccccccch
Q 008298 417 VLVKPYREKSRLV 429 (570)
Q Consensus 417 V~Vk~A~~K~k~~ 429 (570)
|+|.....+.+..
T Consensus 350 ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 350 IKVSVVTERVDTK 362 (549)
T ss_pred EEEEEeeeecccc
Confidence 9999988776543
No 38
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.11 E-value=3e-10 Score=88.67 Aligned_cols=56 Identities=29% Similarity=0.409 Sum_probs=51.2
Q ss_pred HHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 366 VSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 366 Lr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
|.++|++||+|++|++..++ +++|||+|.+.++|+.|++.+|+..++|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998743 599999999999999999999999999999999985
No 39
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.11 E-value=1e-10 Score=112.86 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
...|||||+| +..++++.|+++|-+.|+|.+|+|++| .++|||||+|.++|+|+-|++.||...+.||+|+|..+
T Consensus 8 qd~tiyvgnl-d~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNL-DEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecC-CHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3469999999 999999999999999999999999997 58999999999999999999999999999999999998
Q ss_pred cc
Q 008298 423 RE 424 (570)
Q Consensus 423 ~~ 424 (570)
..
T Consensus 87 s~ 88 (203)
T KOG0131|consen 87 SA 88 (203)
T ss_pred cc
Confidence 73
No 40
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.09 E-value=1.2e-10 Score=114.26 Aligned_cols=76 Identities=25% Similarity=0.304 Sum_probs=71.9
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
...|-|-|| .+.++.++|+..|++||.|-+|.|+.| ++||||||-|.+..+|+.|+++|+|..|+|+.|.|..|+
T Consensus 13 m~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 458999999 999999999999999999999999998 789999999999999999999999999999999998876
Q ss_pred c
Q 008298 424 E 424 (570)
Q Consensus 424 ~ 424 (570)
-
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 4
No 41
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.99 E-value=1.1e-09 Score=118.75 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=76.7
Q ss_pred CCCCC-CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 008298 344 IVAGS-RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (570)
Q Consensus 344 ~~~~~-rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~ 418 (570)
..+.. +.||||++ +++++|++|..+|+..|+|.++++++| +.|||||++|.+.+++..|++.+|+..+.||+++
T Consensus 13 ~~~~~~~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~ 91 (435)
T KOG0108|consen 13 NSPGLSSSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLR 91 (435)
T ss_pred cCcccccceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEE
Confidence 33444 89999999 999999999999999999999999997 7899999999999999999999999999999999
Q ss_pred Eeecccccc
Q 008298 419 VKPYREKSR 427 (570)
Q Consensus 419 Vk~A~~K~k 427 (570)
|.++.....
T Consensus 92 v~~~~~~~~ 100 (435)
T KOG0108|consen 92 VNYASNRKN 100 (435)
T ss_pred eecccccch
Confidence 999876544
No 42
>smart00361 RRM_1 RNA recognition motif.
Probab=98.97 E-value=1.8e-09 Score=88.56 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=51.4
Q ss_pred HHHHHHHhh----cCCCeeEEE-eecc------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 363 EQDVSNYFS----KFGPVQDVR-IPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 363 EedLr~~Fs----qFG~V~~Vr-I~~D------~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
+++|+++|+ +||+|.+|. |+.+ ++||||||+|.+.++|.+|+..||+..++||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999995 5443 57999999999999999999999999999999986
No 43
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.97 E-value=3.3e-10 Score=118.28 Aligned_cols=81 Identities=30% Similarity=0.409 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
...+||||+| +|.++++.|++||++||+|.+|.|++| ++||||||+|++++.+.+++.. ..|.|+|+.|.++.|
T Consensus 5 ~~~KlfiGgi-sw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGL-SWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCc-CccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 4679999999 999999999999999999999999997 8999999999999999999888 789999999999999
Q ss_pred cccccch
Q 008298 423 REKSRLV 429 (570)
Q Consensus 423 ~~K~k~~ 429 (570)
.++....
T Consensus 83 v~r~~~~ 89 (311)
T KOG4205|consen 83 VSREDQT 89 (311)
T ss_pred cCccccc
Confidence 9876443
No 44
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=1.2e-09 Score=100.50 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
..+.||||||| ++.++||+|.++|++.|+|..|.|=.| ..-||+||.|-..++|+.|+.-+++..++.+.|.|.|
T Consensus 34 r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 45679999999 999999999999999999999977666 3569999999999999999999999999999999988
Q ss_pred cc
Q 008298 422 YR 423 (570)
Q Consensus 422 A~ 423 (570)
..
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 53
No 45
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.3e-09 Score=116.35 Aligned_cols=81 Identities=20% Similarity=0.331 Sum_probs=74.2
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
.....+-|||.|| ..++|||.|++.|++||.|+.|+.++| ||||.|.+.++|-+|++.||+..|+|..|.|..|+
T Consensus 255 ~ms~VKvLYVRNL-~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 255 TMSKVKVLYVRNL-MESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred hhhheeeeeeecc-chhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 4456789999999 899999999999999999999999865 99999999999999999999999999999999999
Q ss_pred ccccch
Q 008298 424 EKSRLV 429 (570)
Q Consensus 424 ~K~k~~ 429 (570)
+..+..
T Consensus 330 P~~k~k 335 (506)
T KOG0117|consen 330 PVDKKK 335 (506)
T ss_pred Chhhhc
Confidence 865443
No 46
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=5.7e-09 Score=111.63 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=72.9
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEE-cCeEEE
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV-CGARVL 418 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i-~GR~V~ 418 (570)
..+....||||.| +.++.|++|.-+|++-|+|-++||++| .+||||||+|.+.+.|+.|++.+|+++| .|+.|.
T Consensus 79 ~p~~G~EVfvGkI-PrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 79 PPPRGCEVFVGKI-PRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCceEEecCC-CccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 3355779999999 999999999999999999999999997 7899999999999999999999999988 689898
Q ss_pred Eeeccc
Q 008298 419 VKPYRE 424 (570)
Q Consensus 419 Vk~A~~ 424 (570)
|.....
T Consensus 158 vc~Sva 163 (506)
T KOG0117|consen 158 VCVSVA 163 (506)
T ss_pred EEEeee
Confidence 877654
No 47
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=6.2e-10 Score=116.36 Aligned_cols=74 Identities=19% Similarity=0.397 Sum_probs=70.4
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
.+||||.+ .+.+.|+.||..|..||+|++|.+..| ++|||+||+|+-+|.|+.|++.||+..++||.|+|.+-.
T Consensus 114 cRvYVGSI-sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 114 CRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred Hheeeeee-EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 47999999 999999999999999999999999887 899999999999999999999999999999999998643
No 48
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.92 E-value=1.7e-09 Score=110.54 Aligned_cols=79 Identities=24% Similarity=0.308 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
...+.||+|||| .++++..+|+..|.+||+|.+|.|+ |+|+||.|+..++|..|+..|++..++|++++|.....
T Consensus 75 sk~stkl~vgNi-s~tctn~ElRa~fe~ygpviecdiv----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVGNI-SPTCTNQELRAKFEKYGPVIECDIV----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccCCC-CccccCHHHhhhhcccCCceeeeee----cceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 346789999999 9999999999999999999999996 56999999999999999999999999999999999887
Q ss_pred cccc
Q 008298 425 KSRL 428 (570)
Q Consensus 425 K~k~ 428 (570)
+-..
T Consensus 150 rlrt 153 (346)
T KOG0109|consen 150 RLRT 153 (346)
T ss_pred cccc
Confidence 6543
No 49
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=5.6e-09 Score=93.10 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
..++-|||.|| ++++|.|++.++|++||.|..|||=.. .-||-|||.|++..+|++|++.|+|..++++-+.|-.+++
T Consensus 16 evnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 34789999999 999999999999999999999999654 6799999999999999999999999999999999988775
Q ss_pred c
Q 008298 425 K 425 (570)
Q Consensus 425 K 425 (570)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 4
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=3.5e-09 Score=115.35 Aligned_cols=81 Identities=23% Similarity=0.260 Sum_probs=74.8
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
.-+|.|.|| +|.+.+.+|+.+|+.||.|.+|.||+. +-.|||||+|....+|..|++.+|++.|+||.|-|.||.+
T Consensus 117 k~rLIIRNL-Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNL-PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecC-CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 458999999 999999999999999999999999983 4469999999999999999999999999999999999998
Q ss_pred cccch
Q 008298 425 KSRLV 429 (570)
Q Consensus 425 K~k~~ 429 (570)
|....
T Consensus 196 Kd~ye 200 (678)
T KOG0127|consen 196 KDTYE 200 (678)
T ss_pred ccccc
Confidence 86554
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=1.2e-08 Score=111.34 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=73.4
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhC-----CC-eEEcCeEEE
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKG-----NP-HFVCGARVL 418 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~m-----ng-~~i~GR~V~ 418 (570)
++|||.|| ++++||++|.++|++||+|..+.|+.+ +++|.|||.|.+..+++.||+.. .+ ..++||.|+
T Consensus 293 ~tVFvRNL-~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 293 KTVFVRNL-PFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred ceEEEecC-CccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 69999999 999999999999999999999999885 89999999999999999999986 34 889999999
Q ss_pred Eeeccccccch
Q 008298 419 VKPYREKSRLV 429 (570)
Q Consensus 419 Vk~A~~K~k~~ 429 (570)
|..|..+....
T Consensus 372 v~~Av~RkeA~ 382 (678)
T KOG0127|consen 372 VTLAVTRKEAA 382 (678)
T ss_pred eeeccchHHHH
Confidence 99998876553
No 52
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=7.1e-09 Score=110.83 Aligned_cols=160 Identities=16% Similarity=0.212 Sum_probs=110.1
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccccccc
Q 008298 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRL 428 (570)
Q Consensus 351 IfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K~k~ 428 (570)
|||-+| +..++..+|.++|+.||+|.+|++..| .++|| ||.|+++++|++|++.+|+..+.|+.|.|..+..+..+
T Consensus 79 ~~i~nl-~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKNL-DESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecCC-CcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999999 999999999999999999999999996 68999 99999999999999999999999999999999887655
Q ss_pred hhhhhhhhhcCCCCCCCCCCCCccccccchhcccchHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCccc
Q 008298 429 VDRKYVEKMQHPMFCSLHFTDGDTELHTMPRACNNSRLLRKQLMEEHEQAIELERRRLSEMQLACKPMNHHSYFGYSMDE 508 (570)
Q Consensus 429 ~~rk~~~~~~~~~~~~p~~~~~d~dl~~~aR~~~ner~lrrk~~E~~~q~lE~q~~~l~~~q~~~k~~~~~~~~~~~~~~ 508 (570)
............ . ....+++ ...-..+|....-.. +......+..+.
T Consensus 157 ~~~~~~~~~~~t--------~--------v~vk~~~--------------~~~~~~~l~~~f~~~---g~i~s~~v~~~~ 203 (369)
T KOG0123|consen 157 EAPLGEYKKRFT--------N--------VYVKNLE--------------EDSTDEELKDLFSAY---GSITSVAVMRDS 203 (369)
T ss_pred cccccchhhhhh--------h--------hheeccc--------------cccchHHHHHhhccc---CcceEEEEeecC
Confidence 432211000000 0 0000000 111111111111111 122223344444
Q ss_pred ccccCCCcccCCCCchhhhhhhhhhhcCCCCCcCccccc
Q 008298 509 LQVSEAPAEQGDFPSAERFNYLLDVLNNGSTSEDQVSHI 547 (570)
Q Consensus 509 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 547 (570)
... ..+..+++|-.+|.+..++..| +|+..+++.+.+
T Consensus 204 ~g~-~~~~gfv~f~~~e~a~~av~~l-~~~~~~~~~~~V 240 (369)
T KOG0123|consen 204 IGK-SKGFGFVNFENPEDAKKAVETL-NGKIFGDKELYV 240 (369)
T ss_pred CCC-CCCccceeecChhHHHHHHHhc-cCCcCCccceee
Confidence 443 3577788888888888999999 888888877776
No 53
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=4.1e-10 Score=108.70 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
..+-.||||+| ++.+||.||--.|++||+|++|.+++| +++||||+.|++.-+--.|+..+||..|.||.|+|..
T Consensus 33 kdsA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34568999999 999999999999999999999999997 7999999999999999999999999999999999976
Q ss_pred cc
Q 008298 422 YR 423 (570)
Q Consensus 422 A~ 423 (570)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 43
No 54
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.83 E-value=1e-08 Score=111.84 Aligned_cols=75 Identities=19% Similarity=0.307 Sum_probs=64.9
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcC------------CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEE
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKF------------GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqF------------G~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i 412 (570)
....++|||||| ++.+|+++|+++|.+| +.|..|.+.. .+|||||+|.+.++|..||+ |++..|
T Consensus 172 ~~~~r~lyVgnL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGI-PPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 345689999999 9999999999999975 4566666655 79999999999999999995 899999
Q ss_pred cCeEEEEeecc
Q 008298 413 CGARVLVKPYR 423 (570)
Q Consensus 413 ~GR~V~Vk~A~ 423 (570)
.|+.|+|.+..
T Consensus 248 ~g~~l~v~r~~ 258 (509)
T TIGR01642 248 SNVFLKIRRPH 258 (509)
T ss_pred eCceeEecCcc
Confidence 99999997644
No 55
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=1.1e-08 Score=103.52 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=71.7
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
=.|||-|| ..+.+|..|+.+|++||.|..|+|++| ++||||||+..+.++|.-|+..+||..+.+|.+.|.+...
T Consensus 279 ~ciFvYNL-spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 279 WCIFVYNL-SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eEEEEEec-CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 38999999 889999999999999999999999997 8999999999999999999999999999999999988655
Q ss_pred c
Q 008298 425 K 425 (570)
Q Consensus 425 K 425 (570)
|
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 4
No 56
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=2.2e-08 Score=101.31 Aligned_cols=83 Identities=14% Similarity=0.267 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
......|.|.-| +..+|++++|.+|+..|+|++|++++| ++-|||||.|.++++|++|+..+||..+..+.|+|.
T Consensus 38 ~~skTNLIvNYL-PQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 38 DESKTNLIVNYL-PQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred Ccccceeeeeec-ccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 344557888889 999999999999999999999999997 789999999999999999999999999999999999
Q ss_pred eccccccc
Q 008298 421 PYREKSRL 428 (570)
Q Consensus 421 ~A~~K~k~ 428 (570)
+|++....
T Consensus 117 yARPSs~~ 124 (360)
T KOG0145|consen 117 YARPSSDS 124 (360)
T ss_pred eccCChhh
Confidence 99886543
No 57
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.77 E-value=1.1e-08 Score=115.09 Aligned_cols=80 Identities=23% Similarity=0.252 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccccc
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 426 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K~ 426 (570)
.++|||||+| +..++|.||+..|+.||+|++|.++. .||+|||+.....+|.+|+.+|+.+.+.++.|+|.|+..++
T Consensus 420 ~SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 420 CSRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeeccc-cchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 4789999999 99999999999999999999999988 99999999999999999999999999999999999999887
Q ss_pred cch
Q 008298 427 RLV 429 (570)
Q Consensus 427 k~~ 429 (570)
-..
T Consensus 497 ~ks 499 (894)
T KOG0132|consen 497 PKS 499 (894)
T ss_pred cch
Confidence 655
No 58
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.76 E-value=1.1e-08 Score=99.06 Aligned_cols=84 Identities=17% Similarity=0.289 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEE-Eeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDV-RIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~V-rI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
....+|||||| +..++|..|.+.|+.||.+... +|++| .++|||||.|++.|.+.+|++.||++.+++|+|.|.
T Consensus 94 ~vganlfvgNL-d~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 94 DVGANLFVGNL-DPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccc-CcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 34479999999 7799999999999999998764 55554 789999999999999999999999999999999999
Q ss_pred eccccccchh
Q 008298 421 PYREKSRLVD 430 (570)
Q Consensus 421 ~A~~K~k~~~ 430 (570)
.+..+....+
T Consensus 173 ya~k~~~kg~ 182 (203)
T KOG0131|consen 173 YAFKKDTKGE 182 (203)
T ss_pred EEEecCCCcc
Confidence 9988766553
No 59
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=2.2e-08 Score=106.90 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCe-EEc--CeEEE
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPH-FVC--GARVL 418 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~-~i~--GR~V~ 418 (570)
...-|+|||-+ +..++|.|||++|++||.|.+|.|++| .++||+||+|.+.++|.+|+.+++.. .|- ...|.
T Consensus 32 ~~~vKlfVgqI-prt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 32 GSAVKLFVGQI-PRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred chhhhheeccC-CccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 34559999999 999999999999999999999999998 68999999999999999999998554 443 35788
Q ss_pred Eeeccccccc
Q 008298 419 VKPYREKSRL 428 (570)
Q Consensus 419 Vk~A~~K~k~ 428 (570)
|++|....++
T Consensus 111 vk~Ad~E~er 120 (510)
T KOG0144|consen 111 VKYADGERER 120 (510)
T ss_pred ecccchhhhc
Confidence 8888654433
No 60
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=1.6e-08 Score=93.99 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=71.7
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecccc
Q 008298 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (570)
Q Consensus 350 tIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K 425 (570)
-|||+++ ....||++|.+.|..||+|+.|.+-.| -.|||+.|.|++.+.|++|+..+|+..|-|..|.|.|+--+
T Consensus 74 Ii~Vtgv-HeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 74 IIFVTGV-HEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEecc-CcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 7999999 889999999999999999999999877 46999999999999999999999999999999999998765
Q ss_pred cc
Q 008298 426 SR 427 (570)
Q Consensus 426 ~k 427 (570)
+.
T Consensus 153 gp 154 (170)
T KOG0130|consen 153 GP 154 (170)
T ss_pred CC
Confidence 54
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.71 E-value=1.7e-08 Score=103.32 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=71.7
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccccccc
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRL 428 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K~k~ 428 (570)
-+|||||| +..+++.+|+.+|++||+|.+|.|++ .||||..++...++.|+..|++..|+|..|.|+.++.|.+.
T Consensus 3 ~KLFIGNL-p~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 3 VKLFIGNL-PREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred cchhccCC-CcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 47999999 99999999999999999999999975 59999999999999999999999999999999999988655
Q ss_pred hhh
Q 008298 429 VDR 431 (570)
Q Consensus 429 ~~r 431 (570)
..+
T Consensus 78 stk 80 (346)
T KOG0109|consen 78 STK 80 (346)
T ss_pred ccc
Confidence 433
No 62
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=3.3e-08 Score=95.97 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
...++|||||| +.++.|.+|+++|.+||.|.+|.+-.- ....||||.|+++-+|+.|+..-++..++|-+++|.++..
T Consensus 4 r~~~~iyvGNL-P~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNL-PGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCC-CcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 34679999999 899999999999999999999977431 3467999999999999999999999999999999999765
Q ss_pred c
Q 008298 425 K 425 (570)
Q Consensus 425 K 425 (570)
-
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 4
No 63
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=2.4e-08 Score=101.34 Aligned_cols=84 Identities=18% Similarity=0.287 Sum_probs=77.3
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 008298 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~ 418 (570)
..+|....|||-.| +.++.+.+|-..|-.||.|++.+|..| ++|+||||.|+++.+++.||..|||..|+-++++
T Consensus 280 reGPeGCNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 280 REGPEGCNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hcCCCcceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 34677889999999 889999999999999999999999887 7999999999999999999999999999999999
Q ss_pred Eeecccccc
Q 008298 419 VKPYREKSR 427 (570)
Q Consensus 419 Vk~A~~K~k 427 (570)
|...++|..
T Consensus 359 VQLKRPkda 367 (371)
T KOG0146|consen 359 VQLKRPKDA 367 (371)
T ss_pred hhhcCcccc
Confidence 998777653
No 64
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.61 E-value=9.1e-08 Score=95.11 Aligned_cols=84 Identities=17% Similarity=0.265 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCCCHHHHHH----HhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 347 GSRQIYLTFPAESTFTEQDVSN----YFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~----~FsqFG~V~~VrI~~D-~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
++.||||-+| ...+..++|++ +|++||.|.+|....- +.||=|||.|.+.+.|-.|+..|+|..+.|+.++|.+
T Consensus 8 pn~TlYInnL-nekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 8 PNGTLYINNL-NEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCceEeehhc-cccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3449999999 88899999998 9999999999988754 7899999999999999999999999999999999999
Q ss_pred ccccccchhh
Q 008298 422 YREKSRLVDR 431 (570)
Q Consensus 422 A~~K~k~~~r 431 (570)
|+.+.....+
T Consensus 87 A~s~sdii~~ 96 (221)
T KOG4206|consen 87 AKSDSDIIAQ 96 (221)
T ss_pred ccCccchhhc
Confidence 9988776655
No 65
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=6.7e-08 Score=98.16 Aligned_cols=91 Identities=15% Similarity=0.247 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeE-EcC--eEEE
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHF-VCG--ARVL 418 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~-i~G--R~V~ 418 (570)
+...||||||-| ...-.|||++..|..||+|++|.+.++ .+|||+||.|.+.-+|+.||..+++.. +-| ..+.
T Consensus 16 g~~drklfvgml-~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGML-NKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred Cccchhhhhhhh-cccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 346789999999 888999999999999999999999984 799999999999999999999987643 333 5688
Q ss_pred Eeeccccccchhhhhhhh
Q 008298 419 VKPYREKSRLVDRKYVEK 436 (570)
Q Consensus 419 Vk~A~~K~k~~~rk~~~~ 436 (570)
|+++...+++..|+.++-
T Consensus 95 VK~ADTdkER~lRRMQQm 112 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQM 112 (371)
T ss_pred EEeccchHHHHHHHHHHH
Confidence 999877766666655443
No 66
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.4e-07 Score=98.77 Aligned_cols=82 Identities=16% Similarity=0.262 Sum_probs=75.1
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 008298 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~ 418 (570)
...|+.+-|||--| .+.+|.+||.-+|+.||+|..|.|++| -+-.||||.|++.+++++|+-+|.+..|+.|+|.
T Consensus 234 d~~PPeNVLFVCKL-NPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 234 DVKPPENVLFVCKL-NPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred ccCCCcceEEEEec-CCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 45688899999999 888999999999999999999999998 3567999999999999999999999999999999
Q ss_pred Eeecccc
Q 008298 419 VKPYREK 425 (570)
Q Consensus 419 Vk~A~~K 425 (570)
|.+.+.-
T Consensus 313 VDFSQSV 319 (479)
T KOG0415|consen 313 VDFSQSV 319 (479)
T ss_pred eehhhhh
Confidence 9887653
No 67
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.7e-07 Score=100.26 Aligned_cols=82 Identities=21% Similarity=0.424 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
......|||.|+ +..++++.|+++|+.||+|..++|+.+ +++|||||.|.+.++|.+|+..+|+..+.++.+.|.+
T Consensus 267 ~~~~~nl~vknl-d~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav 345 (369)
T KOG0123|consen 267 SLQGANLYVKNL-DETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAV 345 (369)
T ss_pred cccccccccccC-ccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhH
Confidence 345679999999 899999999999999999999999985 8999999999999999999999999999999999999
Q ss_pred cccccc
Q 008298 422 YREKSR 427 (570)
Q Consensus 422 A~~K~k 427 (570)
++.+..
T Consensus 346 ~qr~~~ 351 (369)
T KOG0123|consen 346 AQRKED 351 (369)
T ss_pred Hhhhcc
Confidence 885443
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.50 E-value=1.5e-07 Score=103.06 Aligned_cols=77 Identities=22% Similarity=0.348 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
..+.|||.+| +..+...||+++|++||+|+-.+|+.. -.|+|||||..+.++|.++|+.|+...|.||.|.|..+
T Consensus 404 ~gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred cccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 3579999999 888889999999999999999999986 46899999999999999999999999999999999887
Q ss_pred cc
Q 008298 423 RE 424 (570)
Q Consensus 423 ~~ 424 (570)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 64
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.47 E-value=4e-07 Score=97.55 Aligned_cols=78 Identities=27% Similarity=0.320 Sum_probs=71.8
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhh-cCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~Fs-qFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...|.+||++| ++++.-.+|+++|. +-|+|+.|.+..| ++||||.|+|+++|.+++|++.||.+.+.||.|.|+-
T Consensus 42 ~r~R~vfItNI-pyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNI-PYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecC-cchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 44567999999 99999999999996 6999999999997 8999999999999999999999999999999999987
Q ss_pred ccc
Q 008298 422 YRE 424 (570)
Q Consensus 422 A~~ 424 (570)
...
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 543
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=1.2e-06 Score=98.52 Aligned_cols=73 Identities=23% Similarity=0.317 Sum_probs=68.4
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 350 tIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-------~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
+|||.|| .+++|.+++...|.+.|.|.+|.|..- .+.|||||.|.+.++|++|+..|+|+.|+|..|.|+.+
T Consensus 517 ~lfvkNl-nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 517 KLFVKNL-NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhcC-CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3999999 999999999999999999999999873 24599999999999999999999999999999999998
Q ss_pred c
Q 008298 423 R 423 (570)
Q Consensus 423 ~ 423 (570)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 71
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.30 E-value=1.1e-06 Score=92.46 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
...+|||..+ ..+++|+||+..|+.||+|..|++.++ .+|||||++|.+......|+..||-..++|.-++|..+
T Consensus 209 ~fnRiYVaSv-HpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 209 KFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hhheEEeeec-CCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 3568999999 899999999999999999999999885 79999999999999999999999999999999999876
Q ss_pred cc
Q 008298 423 RE 424 (570)
Q Consensus 423 ~~ 424 (570)
..
T Consensus 288 vT 289 (544)
T KOG0124|consen 288 VT 289 (544)
T ss_pred cC
Confidence 54
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.27 E-value=6.5e-07 Score=100.48 Aligned_cols=79 Identities=23% Similarity=0.419 Sum_probs=73.5
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
..+|.|.|| ++..+-.+|+.+|+.||.|.+|+||.- .+||||||+|-++.+|.+|+..+..+-+.||++.+.||.
T Consensus 613 ~tKIlVRNi-pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNI-PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeecc-chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 569999999 999999999999999999999999983 579999999999999999999999999999999999998
Q ss_pred cccc
Q 008298 424 EKSR 427 (570)
Q Consensus 424 ~K~k 427 (570)
....
T Consensus 692 ~d~~ 695 (725)
T KOG0110|consen 692 SDNT 695 (725)
T ss_pred cchH
Confidence 7654
No 73
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.27 E-value=1.7e-06 Score=85.30 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcC-CCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKF-GPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqF-G~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
....-+||+.+ +.-+.|..+..||.+| |.|..+++.+. .+||||||.|++++.|+-|.+.||+..+.|+.+.|.
T Consensus 47 ~~~g~~~~~~~-p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 47 EIEGVVYVDHI-PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred CCccceeeccc-ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 34457899999 8889999999999998 88888888774 799999999999999999999999999999999998
Q ss_pred ecccc
Q 008298 421 PYREK 425 (570)
Q Consensus 421 ~A~~K 425 (570)
.-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 86555
No 74
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.25 E-value=2.5e-06 Score=95.77 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEE
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-------~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V 417 (570)
.|.++.+||||| +..++|+.|-..|+.||+|..|+|+.- +.+-||||.|-+..+|++|++.|++.++.++.+
T Consensus 171 DP~TTNlyv~Nl-npsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNL-NPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecC-CccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 567889999999 889999999999999999999999872 678899999999999999999999999999999
Q ss_pred EEeeccc
Q 008298 418 LVKPYRE 424 (570)
Q Consensus 418 ~Vk~A~~ 424 (570)
++.|.+.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999854
No 75
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.24 E-value=2.2e-06 Score=93.11 Aligned_cols=74 Identities=24% Similarity=0.433 Sum_probs=66.8
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec----cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~----D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
.+|||++| +.++++++|++.|.+||+|+..+|.. ++..+||||+|.+.++++.|+.+ +...|+|+++.|+--+.
T Consensus 289 ~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 45999999 99999999999999999999998866 34449999999999999999999 79999999999987655
No 76
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.23 E-value=4.3e-07 Score=90.26 Aligned_cols=79 Identities=20% Similarity=0.190 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
.+..+||||+++ ...++|+.|.++|-+-|+|.+|.|+.+ +.| ||||.|.++-.+..|++.||+..+.++.+.|++
T Consensus 6 ae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 355789999999 999999999999999999999999885 344 999999999999999999999999999999988
Q ss_pred cccc
Q 008298 422 YREK 425 (570)
Q Consensus 422 A~~K 425 (570)
-.-.
T Consensus 84 r~G~ 87 (267)
T KOG4454|consen 84 RCGN 87 (267)
T ss_pred ccCC
Confidence 6543
No 77
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.03 E-value=3.8e-06 Score=83.88 Aligned_cols=72 Identities=26% Similarity=0.488 Sum_probs=66.8
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecccc
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K 425 (570)
.++|||.| ++.+.+.+|..+|..||.|.+|.| ..|||||.|.+.-+|..|+-.+++.+|+|-++.|.++...
T Consensus 2 ~rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~m----k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRL-PYRARERDVERFFKGYGKIPDADM----KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred Cceeeccc-CCccchhHHHHHHhhcccccccee----ecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 46999999 999999999999999999999988 6799999999999999999999999999999888887643
No 78
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.99 E-value=1.1e-05 Score=86.86 Aligned_cols=73 Identities=22% Similarity=0.144 Sum_probs=66.9
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
+...+|||.|| ++++|-..|++-|..||.|..+.|+.. +++| .|.|.++++|++|+..|++..++||.|+|.+
T Consensus 534 rKa~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 45678999999 999999999999999999999999653 6676 9999999999999999999999999999975
No 79
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.83 E-value=5.3e-05 Score=77.16 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
....+|+|.|| ++.++++||+++|.+||+++.+-|-+| ++.|.|=|+|...++|..|++.+++.-++|+.+++...
T Consensus 81 ~~~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 44579999999 999999999999999999999999887 67899999999999999999999999999999998776
Q ss_pred cc
Q 008298 423 RE 424 (570)
Q Consensus 423 ~~ 424 (570)
..
T Consensus 160 ~~ 161 (243)
T KOG0533|consen 160 SS 161 (243)
T ss_pred cC
Confidence 54
No 80
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.73 E-value=2.5e-05 Score=79.39 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=70.6
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
.-+||-|.| .-+++.+.|.+.|.+|=.-...++++| +++|||||.|.+..++..|+.+|+|.+++.|.|+.....
T Consensus 190 DfRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 190 DFRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred cceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 459999999 888999999999999999999999997 899999999999999999999999999999999886654
Q ss_pred ccc
Q 008298 424 EKS 426 (570)
Q Consensus 424 ~K~ 426 (570)
.|.
T Consensus 269 wke 271 (290)
T KOG0226|consen 269 WKE 271 (290)
T ss_pred HHh
Confidence 443
No 81
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.73 E-value=3.8e-05 Score=77.69 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...+.+|||++ ++.+|-+++..+|+-+|.|..|.|++| +.|||+||.|.+.+.++.|+. |++..|.|+.+.|.+
T Consensus 99 ~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 45678999999 998888889999999999999999997 579999999999999999999 899999999999988
Q ss_pred cccc
Q 008298 422 YREK 425 (570)
Q Consensus 422 A~~K 425 (570)
..-+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6654
No 82
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.69 E-value=0.00016 Score=80.12 Aligned_cols=191 Identities=15% Similarity=0.143 Sum_probs=130.4
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
...+||||+| +..+++.++++....||++...+++.| .++||+|-.|.+......|++.+||..+.++.+.|..|
T Consensus 288 ~~~ki~v~~l-p~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 288 SPNKIFVGGL-PLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred ccchhhhccC-cCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 4579999999 899999999999999999999988885 68999999999999999999999999999999999998
Q ss_pred cccccchhhhhhhhhcCCCCCCCCCCCCccccccchh---------cccchHHhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 008298 423 REKSRLVDRKYVEKMQHPMFCSLHFTDGDTELHTMPR---------ACNNSRLLRKQLMEEHEQAIELERRRLSEMQLAC 493 (570)
Q Consensus 423 ~~K~k~~~rk~~~~~~~~~~~~p~~~~~d~dl~~~aR---------~~~ner~lrrk~~E~~~q~lE~q~~~l~~~q~~~ 493 (570)
..-......- .....+ .+...+.-..+++. .+-.+..|+ ..++-+..+|--|.+..+--...
T Consensus 367 ~~g~~~~~~~------~~~~~~-~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLk--dd~EyeeIlEdvr~ec~k~g~v~ 437 (500)
T KOG0120|consen 367 IVGASNANVN------FNISQS-QVPGIPLLMTQMAGIPTEVLCLTNVVTPDELK--DDEEYEEILEDVRTECAKFGAVR 437 (500)
T ss_pred hccchhcccc------CCcccc-ccccchhhhcccCCCcchhhhhhhcCCHHHhc--chHHHHHHHHHHHHHhcccCcee
Confidence 7654332111 000000 11111111111110 122233333 44556688888888776654443
Q ss_pred CCCCCCC-CCCCCcccccccCCCcccCCCCchhhhhhhhhhhcCCCCCcCcccccccCCCCcc
Q 008298 494 KPMNHHS-YFGYSMDELQVSEAPAEQGDFPSAERFNYLLDVLNNGSTSEDQVSHISTHYNDQD 555 (570)
Q Consensus 494 k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (570)
+-.-..+ +++.+.-+. +-=++||-+.|..-+||..| +|=-+.+++. .+.|-|.|
T Consensus 438 ~v~ipr~~~~~~~~~G~-----GkVFVefas~ed~qrA~~~L-~GrKF~nRtV--vtsYydeD 492 (500)
T KOG0120|consen 438 SVEIPRPYPDENPVPGT-----GKVFVEFADTEDSQRAMEEL-TGRKFANRTV--VASYYDED 492 (500)
T ss_pred EEecCCCCCCCCcCCCc-----ccEEEEecChHHHHHHHHHc-cCceeCCcEE--EEEecCHH
Confidence 2222222 444443333 34689999999999999999 8888888754 56676665
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.67 E-value=2.6e-05 Score=86.02 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=66.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~ 418 (570)
....++|+|-+| +.++++++|+..|+.||+|.+|+.-. .++|-.||.|-+.-+|++|++++++..|.|++++
T Consensus 72 ~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 356789999999 99999999999999999999988755 4799999999999999999999999999999998
No 84
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.48 E-value=0.00037 Score=76.00 Aligned_cols=77 Identities=13% Similarity=0.156 Sum_probs=60.7
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccccc
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 426 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K~ 426 (570)
..+.+-+.-.+..--|-++|..+|.+||+|+.|.|-+ +---|.|||.+..+|-.|... .+..|+||.|+|.|..+-+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~--~~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY--SSLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccC--chhhheeeeeccccccchhcc-ccceecCceeEEEEecCCc
Confidence 3444444444223346689999999999999998866 444699999999999888877 8999999999999988754
No 85
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.38 E-value=0.00052 Score=73.76 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=71.1
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecccc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K 425 (570)
+..|.|.+|....+|.+-|..+|+-||.|.+|+|.+. ++--|.|.|.+...|+-|++.++|+.|.|++|+|...+-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n-kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN-KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec-CCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 6789999998899999999999999999999999985 3478999999999999999999999999999999887643
No 86
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.30 E-value=5.4e-05 Score=51.93 Aligned_cols=23 Identities=43% Similarity=1.246 Sum_probs=18.3
Q ss_pred Ccccccccc-ccCCCCCCCccccC
Q 008298 192 VKVCHYFNK-GFCKHGNNCRYFHG 214 (570)
Q Consensus 192 ~kpC~YFar-G~Ck~G~~Cry~Hg 214 (570)
-++|.+|.+ |.|++|++|+|.|+
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSS
T ss_pred cccChhhccCCccCCCCCcCccCC
Confidence 578999988 99999999999997
No 87
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.28 E-value=0.0011 Score=66.83 Aligned_cols=85 Identities=13% Similarity=0.185 Sum_probs=69.9
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec-c----CCCceEEEEECCHHHHHHHHHhCCCeEEc---CeEEE
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC-Q----QKRMFGFVTFVFAETVKQILAKGNPHFVC---GARVL 418 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~-D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~---GR~V~ 418 (570)
..|||||.+| +.++.-.+|..+|..|---+.+.+-+ + -.+-+|||+|.+...|.+|+..+||..|+ +..++
T Consensus 33 ~VRTLFVSGL-P~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGL-PNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred ccceeeeccC-CcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 4689999999 88999999999999986666655533 2 23469999999999999999999999995 78899
Q ss_pred Eeeccccccchhhh
Q 008298 419 VKPYREKSRLVDRK 432 (570)
Q Consensus 419 Vk~A~~K~k~~~rk 432 (570)
+..|+...+...++
T Consensus 112 iElAKSNtK~kr~k 125 (284)
T KOG1457|consen 112 IELAKSNTKRKRRK 125 (284)
T ss_pred eeehhcCcccccCC
Confidence 99988776655444
No 88
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.17 E-value=0.0011 Score=70.19 Aligned_cols=75 Identities=13% Similarity=0.188 Sum_probs=66.9
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeE--------EEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeE
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGAR 416 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~--------VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~ 416 (570)
+..|||.+| +.++|-+++.++|+++|-|.. |++-.+ +-+|=|.++|-..|++..|+..|++..+.|+.
T Consensus 134 Nt~VYVsgL-P~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGL-PLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCC-CCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 456999999 999999999999999998854 455443 67999999999999999999999999999999
Q ss_pred EEEeecc
Q 008298 417 VLVKPYR 423 (570)
Q Consensus 417 V~Vk~A~ 423 (570)
|+|..|+
T Consensus 213 ~rVerAk 219 (382)
T KOG1548|consen 213 LRVERAK 219 (382)
T ss_pred EEEehhh
Confidence 9999886
No 89
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.10 E-value=0.00051 Score=74.15 Aligned_cols=120 Identities=21% Similarity=0.231 Sum_probs=79.7
Q ss_pred ccccccccCCccHHHHHHHhhhccccccCCCCCcceec--------ccccccccccCCCCCCCCCCCCCCCEEEEcCCCC
Q 008298 287 TESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVIL--------AEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPAE 358 (570)
Q Consensus 287 ~~sqR~~k~G~s~~kll~rl~n~i~lidr~~GQ~~vvl--------~eda~K~~~~r~dr~d~g~~~~~~rtIfVg~L~~ 358 (570)
-.-=|.-+.||...++++-+ .+|+.+-|-+-+-+.+| .++-.|.. .-.+-.++-...-.+++|.+.+| +
T Consensus 164 lkhvrrnkeGyVpv~~vaSF-KKvK~LTrd~~~va~ALr~S~kL~vseDgkKVr-RisPlp~~~~eel~srtivaenL-P 240 (484)
T KOG1855|consen 164 LKHVRRNKEGYVPVKLVASF-KKVKALTRDWKLVADALRKSSKLEVSEDGKKVR-RISPLPEFDEEELPSRTIVAENL-P 240 (484)
T ss_pred HHHHhcCCCCceeeehhhhH-HHHHHHhhhhHHHHHHHhhcceEEEccCCceee-ecCCCCCccccccccceEEEecC-C
Confidence 33345667899877777766 45555555544332222 22222221 11111122223346899999999 6
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEeec------c-----------CCCceEEEEECCHHHHHHHHHhCCC
Q 008298 359 STFTEQDVSNYFSKFGPVQDVRIPC------Q-----------QKRMFGFVTFVFAETVKQILAKGNP 409 (570)
Q Consensus 359 ~~~TEedLr~~FsqFG~V~~VrI~~------D-----------~sRGFGFVtF~~~e~A~~Al~~mng 409 (570)
.+-.-+.|.++|+.+|.|..|+|.. | ..+-+|+|+|+..+.|.+|.+.++.
T Consensus 241 ~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 241 LDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 6666699999999999999999965 1 1266899999999999999999754
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.04 E-value=0.0019 Score=70.85 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=68.0
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
+...-|-+.+| +|++|++||.+||+-.+ |+.+.+++. +..|=|||+|.++|++++|+++ +...+..|-|.|..+.
T Consensus 8 ~~~~~vr~rGL-Pwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGL-PWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCC-CccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 34456778899 99999999999999994 888888884 8899999999999999999999 8999999999998886
Q ss_pred cc
Q 008298 424 EK 425 (570)
Q Consensus 424 ~K 425 (570)
.+
T Consensus 85 ~~ 86 (510)
T KOG4211|consen 85 GA 86 (510)
T ss_pred Cc
Confidence 54
No 91
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.82 E-value=0.00054 Score=75.78 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=68.6
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
.+|+|+--+ .-..++-+|.++|+.+|+|.+|+|+.| +++|.|||.|.+.+.+..|+.. .|+-+.|..|.|...+
T Consensus 179 ~Rtvf~~ql-a~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaL-sGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 179 QRTVFCMQL-ARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIAL-SGQRLLGVPVIVQLSE 256 (549)
T ss_pred HHHHHHHHH-hhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhh-cCCcccCceeEecccH
Confidence 579999998 688999999999999999999999997 7899999999999999999954 9999999999998865
Q ss_pred c
Q 008298 424 E 424 (570)
Q Consensus 424 ~ 424 (570)
.
T Consensus 257 a 257 (549)
T KOG0147|consen 257 A 257 (549)
T ss_pred H
Confidence 4
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.80 E-value=0.0007 Score=70.55 Aligned_cols=81 Identities=19% Similarity=0.327 Sum_probs=72.7
Q ss_pred CCCEEE-EcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 347 GSRQIY-LTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 347 ~~rtIf-Vg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...++| |+++ ++.+++++|+.+|..+|.|..|+++.+ ..+|||+|.|........++.. ..+.+.|+.+.+..
T Consensus 183 ~s~~~~~~~~~-~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 183 PSDTIFFVGEL-DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred ccccceeeccc-ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 345677 9999 999999999999999999999999885 7899999999999999999988 88999999999999
Q ss_pred ccccccch
Q 008298 422 YREKSRLV 429 (570)
Q Consensus 422 A~~K~k~~ 429 (570)
..++++..
T Consensus 261 ~~~~~~~~ 268 (285)
T KOG4210|consen 261 DEPRPKSD 268 (285)
T ss_pred CCCCcccc
Confidence 88876553
No 93
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.80 E-value=0.0011 Score=66.62 Aligned_cols=69 Identities=26% Similarity=0.304 Sum_probs=60.9
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...+.|.++ ...+...+|+++|+.||++..+.+ .++++||.|...++|.+|++.+++..+.|+.|.+..
T Consensus 99 ~~r~~~~~~-~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 99 HFRLIVRNL-SLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred cceeeeccc-hhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 457778888 777888999999999999966555 688999999999999999999999999999999933
No 94
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.79 E-value=0.0007 Score=45.37 Aligned_cols=23 Identities=30% Similarity=1.181 Sum_probs=20.9
Q ss_pred CccccccccccCCCCCCCccccC
Q 008298 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 192 ~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
..+|.+|..|.|..|.+|+|.|.
T Consensus 4 ~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 4 TELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCcCcCccCCCCCCCCCcCCCCc
Confidence 35899999999999999999996
No 95
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.74 E-value=0.0039 Score=49.27 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=42.1
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHH
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQIL 404 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al 404 (570)
+.|-|.+. +.. ..+.+..+|.+||+|+++.+.. ..-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf-~~~-~~~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGF-PPD-LAEEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeE-Cch-HHHHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 46777777 333 3466777999999999999974 6779999999999999985
No 96
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.59 E-value=0.015 Score=61.86 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=69.3
Q ss_pred cCCCCCCCCCCCCCCCEEEEcCCCC---CCCC-------HHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHH
Q 008298 334 YSGEKSDPGGIVAGSRQIYLTFPAE---STFT-------EQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQI 403 (570)
Q Consensus 334 ~r~dr~d~g~~~~~~rtIfVg~L~~---~~~T-------EedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~A 403 (570)
.++++ +........++|.+.|+-. +..+ .++|++--++||+|.+|.|.-....|.+-|+|.+.++|..|
T Consensus 252 w~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~c 330 (382)
T KOG1548|consen 252 WRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQC 330 (382)
T ss_pred cCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHH
Confidence 34444 3334455678999988821 1333 34566668999999999664336799999999999999999
Q ss_pred HHhCCCeEEcCeEEEEeeccccc
Q 008298 404 LAKGNPHFVCGARVLVKPYREKS 426 (570)
Q Consensus 404 l~~mng~~i~GR~V~Vk~A~~K~ 426 (570)
++.|+|.+++||.|....+-.+.
T Consensus 331 iq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 331 IQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHhcCeeecceEEEEEEeCCcc
Confidence 99999999999999988765543
No 97
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.55 E-value=0.012 Score=52.35 Aligned_cols=78 Identities=10% Similarity=0.091 Sum_probs=64.1
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhc--CCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEc----CeEEE
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSK--FGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC----GARVL 418 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~Fsq--FG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~----GR~V~ 418 (570)
.||-|.|| |-..|.++|.+++.. .|...-+.+|.| -..|||||.|.+++.|.+-.+..+|..+. .+.+.
T Consensus 2 TTvMirNI-Pn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNI-PNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecC-CCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 48899999 888999999888865 477777888887 46999999999999999999999888875 56777
Q ss_pred Eeecccccc
Q 008298 419 VKPYREKSR 427 (570)
Q Consensus 419 Vk~A~~K~k 427 (570)
|.+|+-.++
T Consensus 81 i~yAriQG~ 89 (97)
T PF04059_consen 81 ISYARIQGK 89 (97)
T ss_pred EehhHhhCH
Confidence 888765443
No 98
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.54 E-value=0.0053 Score=64.90 Aligned_cols=79 Identities=14% Similarity=0.262 Sum_probs=61.6
Q ss_pred CCCEEEEcCCCCCCCCHH---HH--HHHhhcCCCeeEEEeeccC-----CCc-eE-EEEECCHHHHHHHHHhCCCeEEcC
Q 008298 347 GSRQIYLTFPAESTFTEQ---DV--SNYFSKFGPVQDVRIPCQQ-----KRM-FG-FVTFVFAETVKQILAKGNPHFVCG 414 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEe---dL--r~~FsqFG~V~~VrI~~D~-----sRG-FG-FVtF~~~e~A~~Al~~mng~~i~G 414 (570)
..+-+||-+|++....|+ .| .+||++||+|.+|.|-+.. --+ +| ||||...|+|.+||++.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345789999955556665 23 4799999999999876521 112 33 999999999999999999999999
Q ss_pred eEEEEeecccc
Q 008298 415 ARVLVKPYREK 425 (570)
Q Consensus 415 R~V~Vk~A~~K 425 (570)
|.|+..+-..|
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99998775543
No 99
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.46 E-value=0.0081 Score=52.36 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=46.6
Q ss_pred CEEEEcCCCCCCCCHHHHHH----HhhcC-CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 349 RQIYLTFPAESTFTEQDVSN----YFSKF-GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~----~FsqF-G~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
..|||.|| +.+.+-..|+. ++.-+ |+|.+| ..+-|+|.|.+.+.|.+|.+.|++-.+.|++|.|.+..
T Consensus 3 s~L~V~NL-P~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNL-PTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES---TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecC-CCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46899999 66666665554 45555 588777 57899999999999999999999999999999999874
Q ss_pred cc
Q 008298 424 EK 425 (570)
Q Consensus 424 ~K 425 (570)
..
T Consensus 76 ~~ 77 (90)
T PF11608_consen 76 KN 77 (90)
T ss_dssp -S
T ss_pred Cc
Confidence 43
No 100
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.45 E-value=0.0059 Score=54.70 Aligned_cols=55 Identities=24% Similarity=0.307 Sum_probs=36.6
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhC
Q 008298 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG 407 (570)
Q Consensus 350 tIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~m 407 (570)
-|.|.++ ...++-++|++.|++||+|..|.+.. .---|+|-|.+++.|+.|++.+
T Consensus 3 il~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~ 57 (105)
T PF08777_consen 3 ILKFSGL-GEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKL 57 (105)
T ss_dssp EEEEEE---SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHH
T ss_pred EEEEecC-CCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHH
Confidence 3667777 77788999999999999999998876 4558999999999999999985
No 101
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.40 E-value=0.016 Score=51.82 Aligned_cols=71 Identities=23% Similarity=0.257 Sum_probs=52.2
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEE-------------eeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCe
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVR-------------IPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~Vr-------------I~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR 415 (570)
..|.|-+- +.. ....|-++|++||.|.+.. ++. ...+--|+|+++.+|.+||.+ ||..|.|.
T Consensus 7 ~wVtVFGf-p~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~ 81 (100)
T PF05172_consen 7 TWVTVFGF-PPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQK-NGTIFSGS 81 (100)
T ss_dssp CEEEEE----GG-GHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTT-TTEEETTC
T ss_pred eEEEEEcc-CHH-HHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHh-CCeEEcCc
Confidence 45666665 332 5677889999999999885 333 677999999999999999999 99999985
Q ss_pred -EEEEeeccc
Q 008298 416 -RVLVKPYRE 424 (570)
Q Consensus 416 -~V~Vk~A~~ 424 (570)
.|-|.+..+
T Consensus 82 ~mvGV~~~~~ 91 (100)
T PF05172_consen 82 LMVGVKPCDP 91 (100)
T ss_dssp EEEEEEE-HH
T ss_pred EEEEEEEcHH
Confidence 555777643
No 102
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.012 Score=65.00 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=66.9
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHHhh-cCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEE----c
Q 008298 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV----C 413 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~TEedLr~~Fs-qFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i----~ 413 (570)
......+|||||+| +.-++.++|..+|. .||-|.-|-|=.| ..+|-|=|||.+...--+||++ .-..| -
T Consensus 365 q~lDprrTVFVGgv-prpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa-rFvql~h~d~ 442 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGL-PRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA-RFVQLDHTDI 442 (520)
T ss_pred cccCccceEEecCC-CCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh-heEEEecccc
Confidence 34556889999999 88899999999999 7999999999777 4799999999999999999997 33333 2
Q ss_pred CeEEEEeecc
Q 008298 414 GARVLVKPYR 423 (570)
Q Consensus 414 GR~V~Vk~A~ 423 (570)
.++|.|+++.
T Consensus 443 ~KRVEIkPYv 452 (520)
T KOG0129|consen 443 DKRVEIKPYV 452 (520)
T ss_pred ceeeeeccee
Confidence 4689999887
No 103
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.23 E-value=0.013 Score=64.48 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=63.5
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeE-EEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD-VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~-VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
....|-+.+| +|.+||+||.+||+--=.|.+ |-++.| ++-|=|||.|++.+.|+.|+.. +...|+.|-|.|..+
T Consensus 102 ~d~vVRLRGL-Pfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGL-PFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCC-CccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 3457888999 999999999999997755555 444554 6778999999999999999999 899999999999876
Q ss_pred c
Q 008298 423 R 423 (570)
Q Consensus 423 ~ 423 (570)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 104
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.21 E-value=0.011 Score=65.74 Aligned_cols=62 Identities=26% Similarity=0.323 Sum_probs=52.9
Q ss_pred HHHHHHhhcCCCeeEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecccc
Q 008298 364 QDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (570)
Q Consensus 364 edLr~~FsqFG~V~~VrI~~D-------~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K 425 (570)
|+|+.-+++||.|..|.|+.+ -.-|--||+|.+.+++++|.++|+|..+.||.|...++-+.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 456666899999999999884 24456699999999999999999999999999998887543
No 105
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.88 E-value=0.0098 Score=63.28 Aligned_cols=83 Identities=13% Similarity=0.198 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeE--------EEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEE
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV 412 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~--------VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i 412 (570)
....-+|||-.| +..+++.+|.++|.+.|.|.. |.|-+| +.||=|-|+|+++..|+.|++..++..+
T Consensus 63 ~s~~~ti~v~g~-~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGC-PDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeecc-CccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 455679999999 889999999999999998853 333333 6899999999999999999999999999
Q ss_pred cCeEEEEeeccccccc
Q 008298 413 CGARVLVKPYREKSRL 428 (570)
Q Consensus 413 ~GR~V~Vk~A~~K~k~ 428 (570)
+|..|+|..|..+..+
T Consensus 142 ~gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTGV 157 (351)
T ss_pred cCCCchhhhhhhccCc
Confidence 9999999999887754
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.80 E-value=0.019 Score=63.54 Aligned_cols=163 Identities=16% Similarity=0.155 Sum_probs=90.7
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-------CCCc---eEEEEECCHHHHHHHHHhCCCeEEcC
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRM---FGFVTFVFAETVKQILAKGNPHFVCG 414 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-------~sRG---FGFVtF~~~e~A~~Al~~mng~~i~G 414 (570)
...+++||||+| +++++|+.|...|..||.|. |..+.. ..+| |.|+.|+++..+++.+.+. ..+.
T Consensus 256 ~~~S~KVFvGGl-p~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC---~~~~ 330 (520)
T KOG0129|consen 256 PRYSRKVFVGGL-PWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC---SEGE 330 (520)
T ss_pred cccccceeecCC-CccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH---hhcc
Confidence 345789999999 99999999999999999864 444421 4577 9999999999999887763 2244
Q ss_pred eEEEEeeccccccchh-hhhhhhhcCCCCCCCCCCCCccccccchhcccchHHhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 008298 415 ARVLVKPYREKSRLVD-RKYVEKMQHPMFCSLHFTDGDTELHTMPRACNNSRLLRKQLMEEHEQAIELERRRLSEMQLAC 493 (570)
Q Consensus 415 R~V~Vk~A~~K~k~~~-rk~~~~~~~~~~~~p~~~~~d~dl~~~aR~~~ner~lrrk~~E~~~q~lE~q~~~l~~~q~~~ 493 (570)
....++...++-+..+ +-++-......+---.-...|+.+.-.- =.=+|+|+-+++ .+ +| +
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFV--Ggvprpl~A~eL---A~--------im-----d 392 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFV--GGLPRPLTAEEL---AM--------IM-----E 392 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEe--cCCCCcchHHHH---HH--------HH-----H
Confidence 4444444333322111 0000000000000000000111111000 011233333221 11 12 2
Q ss_pred CCCCCCCCCCCCcc-cccccCCCcccCCCCchhhhhhhh
Q 008298 494 KPMNHHSYFGYSMD-ELQVSEAPAEQGDFPSAERFNYLL 531 (570)
Q Consensus 494 k~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~ 531 (570)
-..+...|-|+.+| ++| -++++.-+-|----.+..|+
T Consensus 393 ~lyGgV~yaGIDtD~k~K-YPkGaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 393 DLFGGVLYVGIDTDPKLK-YPKGAGRVTFSNQQAYIKAI 430 (520)
T ss_pred HhcCceEEEEeccCcccC-CCCCcceeeecccHHHHHHH
Confidence 23578889999999 998 57888877775445555555
No 107
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.79 E-value=0.036 Score=55.87 Aligned_cols=78 Identities=13% Similarity=0.176 Sum_probs=66.4
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEc-CeEEEEeec
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 422 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~-GR~V~Vk~A 422 (570)
..+++..+|+.+| +..++.+.+..+|.+|.--.+|+++.. .++.|||+|.+...|..|...+.+..|- ...+.|..+
T Consensus 142 ~~ppn~ilf~~ni-P~es~~e~l~~lf~qf~g~keir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 142 MAPPNNILFLTNI-PSESESEMLSDLFEQFPGFKEIRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCCCceEEEEecC-CcchhHHHHHHHHhhCcccceeEeccC-CCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 3577889999999 888999999999999999999999763 5789999999999999999988776664 667777665
Q ss_pred c
Q 008298 423 R 423 (570)
Q Consensus 423 ~ 423 (570)
+
T Consensus 220 ~ 220 (221)
T KOG4206|consen 220 K 220 (221)
T ss_pred C
Confidence 4
No 108
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.66 E-value=0.011 Score=59.59 Aligned_cols=67 Identities=10% Similarity=0.210 Sum_probs=53.6
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEE
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i 412 (570)
.....||||.|| ..++||++|+..|+.|--...++|--......|||.|++.+.|..|+..+.|..|
T Consensus 207 ~~acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 345669999999 9999999999999999877767664423445789999988888888888766554
No 109
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.58 E-value=0.048 Score=58.59 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecccc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K 425 (570)
++..-+-|-+|...+++-+.|-++|..||.|++|+.++ .+-|-|.|+..+..++++|+..||+..+.|.+|.|...+..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk-Tk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK-TKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee-cccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 44567888999667888899999999999999999987 36789999999999999999999999999999999987654
No 110
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.43 E-value=0.0079 Score=38.24 Aligned_cols=19 Identities=32% Similarity=0.926 Sum_probs=16.8
Q ss_pred cccccccccCCCCCCCccccC
Q 008298 194 VCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 194 pC~YFarG~Ck~G~~Cry~Hg 214 (570)
||.||.. |++|.+|.|.|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 6898876 999999999993
No 111
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.35 E-value=0.055 Score=51.50 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=55.0
Q ss_pred CCCCCCCCEEEEcCCCC------CCCCH---HHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEE
Q 008298 342 GGIVAGSRQIYLTFPAE------STFTE---QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (570)
Q Consensus 342 g~~~~~~rtIfVg~L~~------~~~TE---edLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i 412 (570)
+..+|+.-||.|.-. . ..+.+ .+|-+.|.+||+|.=||++- +-=+|||.+-+.|-+|++. +|..|
T Consensus 21 ~~~GPpDaTVvVsv~-~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals~-dg~~v 94 (146)
T PF08952_consen 21 SSQGPPDATVVVSVD-SPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALSL-DGIQV 94 (146)
T ss_dssp -----TT-EEEEEEC-S-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHHG-CCSEE
T ss_pred HhcCCCCceEEEEec-CCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHcc-CCcEE
Confidence 567788889998777 4 24444 25667789999999999875 3579999999999999998 99999
Q ss_pred cCeEEEEeeccc
Q 008298 413 CGARVLVKPYRE 424 (570)
Q Consensus 413 ~GR~V~Vk~A~~ 424 (570)
+|+.|+|+...+
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999988554
No 112
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=95.35 E-value=0.017 Score=47.79 Aligned_cols=51 Identities=33% Similarity=0.533 Sum_probs=38.8
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHh
Q 008298 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKL 61 (570)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~emirla~gpd~~~~~~i~~ak~~l 61 (570)
.-+|.+|++++|+.|.||-|+||=- +-.|++.| +..+.+|.+-|..|-.-|
T Consensus 11 E~Lyp~V~~~~p~~A~KITGMLLEm--d~~ell~l-le~~~~L~~kv~EA~~vl 61 (64)
T smart00517 11 ERLYPKVQALEPELAGKITGMLLEM--DNSELLHL-LESPELLRSKVDEALEVL 61 (64)
T ss_pred HHHhHHHHhhCcccCCcCeeeeeCC--CHHHHHHH-hcCHHHHHHHHHHHHHHH
Confidence 4589999999999999999999854 55677777 455666677777765433
No 113
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=95.33 E-value=0.011 Score=49.92 Aligned_cols=50 Identities=28% Similarity=0.417 Sum_probs=40.2
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHH
Q 008298 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60 (570)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~emirla~gpd~~~~~~i~~ak~~ 60 (570)
..+|.+|++++|++|.||-|+||= .+..|++.|=-.| .+|+..|..|-.-
T Consensus 22 e~Ly~~V~~~~p~~A~KITGMLLe--~~~~ell~ll~~~-~~L~~kv~eA~~v 71 (72)
T PF00658_consen 22 ERLYPLVQAIYPELAGKITGMLLE--MDNSELLHLLEDP-ELLREKVQEAIEV 71 (72)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTT--SCHHHHHHHHHTH-HHHHHHHHHHHHH
T ss_pred ccccHHHHHhCcchhHHHHHHHhc--CCHHHHHHHhCCH-HHHHHHHHHHHHh
Confidence 468999999999999999999985 5667788885554 6777888877643
No 114
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.99 E-value=0.023 Score=60.41 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=62.4
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCC--CeeEEEeec----cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 350 QIYLTFPAESTFTEQDVSNYFSKFG--PVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 350 tIfVg~L~~~~~TEedLr~~FsqFG--~V~~VrI~~----D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
.+||||| -|.+|++||-+....-| .+.+++... +++||||.|...+...+++.++.+....|.|..-.|-.+.
T Consensus 82 ~~YvGNL-~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 82 CCYVGNL-LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEecce-eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 7999999 99999999999887777 445555544 3899999999999999999999999999999877776654
Q ss_pred c
Q 008298 424 E 424 (570)
Q Consensus 424 ~ 424 (570)
.
T Consensus 161 K 161 (498)
T KOG4849|consen 161 K 161 (498)
T ss_pred h
Confidence 3
No 115
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.58 E-value=0.043 Score=61.54 Aligned_cols=73 Identities=14% Similarity=0.209 Sum_probs=56.3
Q ss_pred CEEEEcCCCCCCCCH-------HHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcC-eEE
Q 008298 349 RQIYLTFPAESTFTE-------QDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCG-ARV 417 (570)
Q Consensus 349 rtIfVg~L~~~~~TE-------edLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~G-R~V 417 (570)
..|+|.|+ + .+-+ .-|.+.|+++|+|+.+.+|.+ ..+||.|+.|++..+|+.|++.+||+.|+- .+.
T Consensus 59 ~vVvv~g~-P-vV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 59 SVVVVDGA-P-VVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred eEEEECCC-c-ccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 46677776 2 2222 336778999999999999975 789999999999999999999999988864 344
Q ss_pred EEeecc
Q 008298 418 LVKPYR 423 (570)
Q Consensus 418 ~Vk~A~ 423 (570)
.|...+
T Consensus 137 ~v~~f~ 142 (698)
T KOG2314|consen 137 FVRLFK 142 (698)
T ss_pred Eeehhh
Confidence 554433
No 116
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.11 E-value=0.029 Score=57.58 Aligned_cols=68 Identities=21% Similarity=0.280 Sum_probs=58.0
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec-c--------CCCc-------eEEEEECCHHHHHHHHHhCCCeE
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC-Q--------QKRM-------FGFVTFVFAETVKQILAKGNPHF 411 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~-D--------~sRG-------FGFVtF~~~e~A~~Al~~mng~~ 411 (570)
..-||+++| +..++-.-||++|++||.|-.|.+.. + +.+| =|+|.|.+-..|+++.+.||+..
T Consensus 74 ~GVvylS~I-Pp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 74 TGVVYLSNI-PPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred ceEEEeccC-CCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 457999999 88899999999999999999998865 2 1111 28999999999999999999999
Q ss_pred EcCeE
Q 008298 412 VCGAR 416 (570)
Q Consensus 412 i~GR~ 416 (570)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99973
No 117
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.99 E-value=0.024 Score=58.10 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=50.3
Q ss_pred HHHHHHhh-cCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 364 QDVSNYFS-KFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 364 edLr~~Fs-qFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
++|-..|+ +||+|+++.|-.+ .-+|=.+|.|..+++|++|++.+|+.++.|++|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 45555556 9999999977653 56888999999999999999999999999999988764
No 118
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=93.88 E-value=0.13 Score=56.01 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=69.1
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCe-EEEEeecc
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVLVKPYR 423 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR-~V~Vk~A~ 423 (570)
.|++.+|.+.++ +..++||++++.|.+-|-+.+...-..+.|-++.+.+.+.|+|-.|+-.++.|.+++. -++|.+.+
T Consensus 411 ~PpsatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 411 FPPSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CCchhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 467789999999 8899999999999999988877776667788999999999999999999999999877 78888765
No 119
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=93.87 E-value=0.025 Score=61.25 Aligned_cols=28 Identities=43% Similarity=1.098 Sum_probs=25.1
Q ss_pred CCccccccccccCCCCCCCccccCCCCC
Q 008298 191 PVKVCHYFNKGFCKHGNNCRYFHGHPMP 218 (570)
Q Consensus 191 ~~kpC~YFarG~Ck~G~~Cry~Hg~~~~ 218 (570)
..+||.||--|-|+-|.+|||.||..++
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~~V~ 166 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGLDVP 166 (486)
T ss_pred hhccchHhhccccccCcccccccCcccc
Confidence 4899999999999999999999995543
No 120
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=93.36 E-value=0.042 Score=57.62 Aligned_cols=27 Identities=48% Similarity=1.249 Sum_probs=25.3
Q ss_pred CCCCCcccccccc-ccCCCCCCCccccC
Q 008298 188 PEFPVKVCHYFNK-GFCKHGNNCRYFHG 214 (570)
Q Consensus 188 ~~~~~kpC~YFar-G~Ck~G~~Cry~Hg 214 (570)
...+-++|.+|.+ |+|+.|..|+|.|+
T Consensus 173 ~~~kt~lC~~f~~tG~C~yG~rC~F~H~ 200 (332)
T KOG1677|consen 173 PKYKTKLCPKFQKTGLCKYGSRCRFIHG 200 (332)
T ss_pred CCCCCcCCCccccCCCCCCCCcCeecCC
Confidence 5778899999999 99999999999999
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.12 E-value=0.22 Score=52.30 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=51.8
Q ss_pred HHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 363 EQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 363 EedLr~~FsqFG~V~~VrI~~D-----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
|+++++-.++||+|..|-|..+ .-----||.|...+.|-+|+-.|||.+|+||.|...++..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 5678888999999999977653 1122379999999999999999999999999999888753
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=92.81 E-value=0.12 Score=59.38 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeE-EEeec---cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD-VRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~-VrI~~---D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
......|||..| +..+++.++-++|..--.|++ |.|.+ |+-++-|||.|.+++++..|+.....++++.|.|+|.
T Consensus 431 ~~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQL-PVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccC-CccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 345679999999 999999999999998888888 65544 5889999999999998888888878999999999998
Q ss_pred eccccc
Q 008298 421 PYREKS 426 (570)
Q Consensus 421 ~A~~K~ 426 (570)
...++.
T Consensus 510 si~~~~ 515 (944)
T KOG4307|consen 510 SIADYA 515 (944)
T ss_pred chhhHH
Confidence 766543
No 123
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=91.81 E-value=0.11 Score=54.05 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=30.3
Q ss_pred CCCCCEEEEcCCCC-C----------CCCHHHHHHHhhcCCCeeEEEeec
Q 008298 345 VAGSRQIYLTFPAE-S----------TFTEQDVSNYFSKFGPVQDVRIPC 383 (570)
Q Consensus 345 ~~~~rtIfVg~L~~-~----------~~TEedLr~~FsqFG~V~~VrI~~ 383 (570)
+....|||+.+||- | --+|+.|+..|..||.|..|.||.
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 44456888888832 1 146788999999999999999975
No 124
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=90.90 E-value=1.3 Score=47.99 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=60.6
Q ss_pred CCEEEEcCCC-CCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC--eEEEEeeccc
Q 008298 348 SRQIYLTFPA-ESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYRE 424 (570)
Q Consensus 348 ~rtIfVg~L~-~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~G--R~V~Vk~A~~ 424 (570)
++-|.++-|+ -+.+|-+-|..+-...|+|..|.|.+ +.---|.|+|++.+.|++|.+.|||..|.. -.++|.+|++
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk-kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK-KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe-ccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 3444444443 47899999999999999999998887 233358999999999999999999987754 4677778876
Q ss_pred c
Q 008298 425 K 425 (570)
Q Consensus 425 K 425 (570)
.
T Consensus 199 ~ 199 (494)
T KOG1456|consen 199 T 199 (494)
T ss_pred c
Confidence 4
No 125
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.22 E-value=1.3 Score=36.47 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=44.3
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcC---CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhC
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKF---GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG 407 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqF---G~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~m 407 (570)
..+|+|.|+ .+++.+||+.||..| .....|..+-|. -+=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGv--d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV--DELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC--CCCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 458999999 679999999999999 234577777653 3668999999999999864
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.11 E-value=0.1 Score=55.39 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=61.0
Q ss_pred CEEEEcCCCCCCCCHHHHH--HHhhcCCCeeEEEeeccC----C---CceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 349 RQIYLTFPAESTFTEQDVS--NYFSKFGPVQDVRIPCQQ----K---RMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr--~~FsqFG~V~~VrI~~D~----s---RGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
+.+||-+|+.....|..|+ ++|++||.|.+|.+-.+. + -.-++|||...++|..||...++...+|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 5678888844555666665 489999999999887752 1 123799999999999999999999999998777
Q ss_pred eeccccc
Q 008298 420 KPYREKS 426 (570)
Q Consensus 420 k~A~~K~ 426 (570)
.....+-
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 6665554
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=89.77 E-value=0.48 Score=55.90 Aligned_cols=84 Identities=8% Similarity=0.085 Sum_probs=70.6
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC--eEEEEee
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVKP 421 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~G--R~V~Vk~ 421 (570)
....++.++||+| ...+.-..|...|..||+|..|.+-. .--|++|.|++...++.|+..|.+.-|+| +++.|.+
T Consensus 451 kst~ttr~~sggl-g~w~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 451 KSTPTTRLQSGGL-GPWSPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred ccccceeeccCCC-CCCChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 3455789999999 66678899999999999999977644 66699999999999999999998888875 7899999
Q ss_pred ccccccchh
Q 008298 422 YREKSRLVD 430 (570)
Q Consensus 422 A~~K~k~~~ 430 (570)
+.+-.....
T Consensus 528 a~~~~~~Pq 536 (975)
T KOG0112|consen 528 ASPPGATPQ 536 (975)
T ss_pred ccCCCCChh
Confidence 887665543
No 128
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=89.43 E-value=0.31 Score=53.35 Aligned_cols=79 Identities=14% Similarity=0.090 Sum_probs=61.7
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCC-eEEcCeEEEEeecccccc
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP-HFVCGARVLVKPYREKSR 427 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng-~~i~GR~V~Vk~A~~K~k 427 (570)
.++|+|+| ...++..||+..|...---..=.++. +-||+||.+.+..-|.+|++.+++ ..+.|+++.|....++..
T Consensus 2 nklyignL-~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNL-SPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred Cccccccc-CCCCChHHHHHHhccccCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 47999999 99999999999997541100111111 678999999999999999999876 678999999999887765
Q ss_pred chh
Q 008298 428 LVD 430 (570)
Q Consensus 428 ~~~ 430 (570)
+..
T Consensus 79 rsr 81 (584)
T KOG2193|consen 79 RSR 81 (584)
T ss_pred Hhh
Confidence 543
No 129
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.70 E-value=0.91 Score=47.97 Aligned_cols=74 Identities=22% Similarity=0.209 Sum_probs=57.3
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCe-EEEEeeccccccc
Q 008298 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVLVKPYREKSRL 428 (570)
Q Consensus 350 tIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR-~V~Vk~A~~K~k~ 428 (570)
.|-|-+.++ -.-..|-..|++||+|+++... +.-.|=.|.|...-+|++||.. |+.+|+|. .|-|+++..|..+
T Consensus 199 WVTVfGFpp--g~~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDksvi 273 (350)
T KOG4285|consen 199 WVTVFGFPP--GQVSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKSVI 273 (350)
T ss_pred eEEEeccCc--cchhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHHHh
Confidence 444444413 2456788999999999998666 3677999999999999999999 99999886 5668887776543
No 130
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.57 E-value=1.3 Score=43.66 Aligned_cols=63 Identities=14% Similarity=0.024 Sum_probs=48.2
Q ss_pred CHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEEEEeeccccc
Q 008298 362 TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVKPYREKS 426 (570)
Q Consensus 362 TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mn--g~~i~GR~V~Vk~A~~K~ 426 (570)
..+.|+++|..|+.+....+.. +-+=..|.|.+.+.|.+|...++ +..+.|..++|.++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4588999999999999988876 66668999999999999999998 899999999999885443
No 131
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=88.38 E-value=0.057 Score=62.94 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=62.4
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec----cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~----D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
.++||.+| +..+.+++|+..|+.+|.|+.|+|.. ++-||+|+|.|..++.+.+|++...++.++...+-|.....
T Consensus 668 ~~~fvsnl-~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~pf 746 (881)
T KOG0128|consen 668 IKIFVSNL-SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGPPF 746 (881)
T ss_pred HHHHHhhc-chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCCCC
Confidence 38999999 99999999999999999999888862 47899999999999999999998666666544444444333
Q ss_pred cc
Q 008298 425 KS 426 (570)
Q Consensus 425 K~ 426 (570)
++
T Consensus 747 ~g 748 (881)
T KOG0128|consen 747 QG 748 (881)
T ss_pred CC
Confidence 33
No 132
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=88.18 E-value=0.11 Score=61.07 Aligned_cols=79 Identities=15% Similarity=0.276 Sum_probs=65.5
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec---cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~---D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
.-.++|||+|+| +..+++.+++..|..+|.|++|.|-. .+---||||.|.+...+-.|+..+.+..|..-.+++..
T Consensus 369 ~~atrTLf~Gnl-~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNL-DSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCc-ccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 345889999999 99999999999999999999998843 13345999999999999999999888877666666666
Q ss_pred ccc
Q 008298 422 YRE 424 (570)
Q Consensus 422 A~~ 424 (570)
-..
T Consensus 448 G~~ 450 (975)
T KOG0112|consen 448 GQP 450 (975)
T ss_pred ccc
Confidence 544
No 133
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=87.16 E-value=0.28 Score=57.49 Aligned_cols=76 Identities=13% Similarity=0.037 Sum_probs=67.1
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec---cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~---D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
...++|.++ ++..|.+.++.+++.+|.+++++++. ++.+|.+||.|.++.++..+...+....+.-+.+.|....+
T Consensus 736 K~~v~i~g~-pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGP-PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCC-CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 568999999 99999999999999999999999877 37899999999999999999999888888777777766444
No 134
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=87.11 E-value=0.32 Score=52.69 Aligned_cols=72 Identities=17% Similarity=0.097 Sum_probs=54.8
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcC----CCeeEEEeec---cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 350 QIYLTFPAESTFTEQDVSNYFSKF----GPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 350 tIfVg~L~~~~~TEedLr~~FsqF----G~V~~VrI~~---D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
-|-..+| ++++++.|+.+||..- |-++.|-.++ ++.-|=|||.|..+++|++||.+ +...|+-|-|.+.+.
T Consensus 163 ivRmRGL-Pfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 163 IVRMRGL-PFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS 240 (508)
T ss_pred EEEecCC-CCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 3455789 9999999999999732 2344444443 37789999999999999999999 777777776666554
Q ss_pred c
Q 008298 423 R 423 (570)
Q Consensus 423 ~ 423 (570)
.
T Consensus 241 T 241 (508)
T KOG1365|consen 241 T 241 (508)
T ss_pred h
Confidence 3
No 135
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=87.07 E-value=2.9 Score=41.75 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=57.0
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEE--cCeEEEEee
Q 008298 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV--CGARVLVKP 421 (570)
Q Consensus 350 tIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i--~GR~V~Vk~ 421 (570)
.+.|.+| +..-+-.||+++..+-|.|.-..+.+ -|.|.|.|...|+.+-|+.++..+.+ .|-...+..
T Consensus 117 RVvVsGL-p~SgSWQDLKDHmReaGdvCfadv~r---Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 117 RVVVSGL-PPSGSWQDLKDHMREAGDVCFADVQR---DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eEEEecC-CCCCchHHHHHHHHhhCCeeeeeeec---ccceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 8999999 78889999999999999999888865 56999999999999999999876555 344444443
No 136
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=86.65 E-value=0.47 Score=53.25 Aligned_cols=35 Identities=37% Similarity=0.863 Sum_probs=29.3
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCCCCccccC
Q 008298 180 TSRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 180 ~~~rs~~~~~~~~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
.-||.+.----..-||-=|.||.|++|.+|.|.||
T Consensus 224 ARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 224 ARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred cccCCcccccccCccCcccccCCCCCCCccccccc
Confidence 34666655555678999999999999999999999
No 137
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=86.60 E-value=0.9 Score=37.10 Aligned_cols=68 Identities=32% Similarity=0.556 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHhccCCC--CccccccchhHHHhhccchhcccccccccccccCCc-cHHHHHHHhhhccccccCCCCC
Q 008298 243 SLERLEAEITELLKQRRGF--PISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGY-SLTKLLARLKNSIRLIDRPHGQ 319 (570)
Q Consensus 243 sle~le~e~~Ell~~r~~~--p~~~~~lp~~yf~kyG~~l~~~~~~~~sqR~~k~G~-s~~kll~rl~n~i~lidr~~GQ 319 (570)
+++.+..+|.+++.+.++. ++.++.++..|...| ..+... .-|| ++..++..+.+.+.+.++.+|+
T Consensus 2 ~~~~~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~-~~f~~~----------~yG~~~l~~ll~~~~~~~~i~~~~~g~ 70 (74)
T PF12872_consen 2 SLEELKKLLRELLESQKGEDGWVSLSQLGQEYKKKY-PDFDPR----------DYGFSSLSELLESLPDVVEIEERQHGG 70 (74)
T ss_dssp --HHHHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHH-TT--TC----------CTTSSSHHHHHHT-TTTEEEEEEECCC
T ss_pred hHHHHHHHHHHHHHhCcCCCceEEHHHHHHHHHHHC-CCCCcc----------ccCCCcHHHHHHhCCCeEEEeeeCCCC
Confidence 4677888999999776643 788899999999988 666543 3477 6888987777777777777776
Q ss_pred cc
Q 008298 320 HS 321 (570)
Q Consensus 320 ~~ 321 (570)
+.
T Consensus 71 ~~ 72 (74)
T PF12872_consen 71 QV 72 (74)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 138
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=86.36 E-value=0.6 Score=48.28 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=61.3
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCC----CeEEcCeEEEEee
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGN----PHFVCGARVLVKP 421 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mn----g~~i~GR~V~Vk~ 421 (570)
.-|||.+| ...++.+.+..-|+.||+|+...+..| +.-+=|+|.|...-.+.+|+...+ +...+++.+.|.+
T Consensus 32 a~l~V~nl-~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNL-MQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEec-chhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 68999999 888999999999999999998766554 566789999999999999998863 3455778888876
Q ss_pred cc
Q 008298 422 YR 423 (570)
Q Consensus 422 A~ 423 (570)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 54
No 139
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=86.19 E-value=2.1 Score=49.69 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=61.6
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCee-EEEeec-c--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQ-DVRIPC-Q--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~-~VrI~~-D--~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
.+-|-+.+. +++++-+||-+||+-|-.+- +|+|-+ | ..-|=+-|.|++.++|.+|...++++.|.+|.|++..
T Consensus 867 p~V~~~~n~-Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNF-PFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCC-CccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 347778888 99999999999999997765 455544 2 5678899999999999999999999999999998753
No 140
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=85.84 E-value=0.9 Score=51.68 Aligned_cols=78 Identities=10% Similarity=0.061 Sum_probs=63.7
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhh-cCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEE---cCeEEEE
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV---CGARVLV 419 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~Fs-qFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i---~GR~V~V 419 (570)
.+..++-|||.|| -.-||.-+|+.+.+ ..|.|++..| |+-|--+||+|.+.++|-+-..+|++..+ +++.+.|
T Consensus 440 R~~~SnvlhI~nL-vRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 440 RKEPSNVLHIDNL-VRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCccceEeeecc-cccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 3456789999999 88899999999999 5778877743 54666799999999999999999998877 6677777
Q ss_pred eeccc
Q 008298 420 KPYRE 424 (570)
Q Consensus 420 k~A~~ 424 (570)
.+...
T Consensus 517 df~~~ 521 (718)
T KOG2416|consen 517 DFVRA 521 (718)
T ss_pred eecch
Confidence 66543
No 141
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=85.04 E-value=1.4 Score=48.08 Aligned_cols=75 Identities=15% Similarity=0.275 Sum_probs=58.2
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec--c-----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC--Q-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~--D-----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
.-|-|.|| ...+|.+++..+|+-.|+|.++++.. | -..-.+||.|.+...+..|--. -...+-++-+.|-+
T Consensus 8 ~vIqvani-spsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL-tntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANI-SPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL-TNTVFVDRALIVRP 85 (479)
T ss_pred ceeeeccc-CchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh-ccceeeeeeEEEEe
Confidence 37999999 88999999999999999999999865 2 2344899999999988876444 44455566666666
Q ss_pred cccc
Q 008298 422 YREK 425 (570)
Q Consensus 422 A~~K 425 (570)
|-..
T Consensus 86 ~~~~ 89 (479)
T KOG4676|consen 86 YGDE 89 (479)
T ss_pred cCCC
Confidence 6543
No 142
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=83.90 E-value=4.3 Score=39.05 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=55.9
Q ss_pred CCCCCEEEEcCCCCCCC-CHHHHHH---HhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTF-TEQDVSN---YFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~-TEedLr~---~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
.|+-.||.|.-| ..++ ..+|++. ..+.||+|.+|... .|--|.|+|.+..+|=+|+.+... ..-|..+.+.
T Consensus 83 epPMsTIVVRWl-kknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRWL-KKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCceeEEeehh-hhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 466779999887 4433 2355554 56889999999765 678899999999999999998544 5567777777
Q ss_pred ecc
Q 008298 421 PYR 423 (570)
Q Consensus 421 ~A~ 423 (570)
|-.
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 743
No 143
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.19 E-value=0.43 Score=51.39 Aligned_cols=22 Identities=45% Similarity=1.147 Sum_probs=21.5
Q ss_pred ccccccccccCCCCCCCccccC
Q 008298 193 KVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 193 kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
.+|.||.||+|+.|.-|||.|-
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~ 30 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHS 30 (344)
T ss_pred hhhhhcccccccccceeeeecc
Confidence 7999999999999999999998
No 144
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=82.30 E-value=1.5 Score=47.65 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=64.2
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCee-E--EEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQ-D--VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~-~--VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...|-+.+| ++..+-|+|-.||..|-.-+ - |.|+.+ +.-|=|||.|.+.|.|.+|.....++...+|-|.|..
T Consensus 280 kdcvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 457889999 99999999999999987433 2 677763 6789999999999999999999888888899999988
Q ss_pred ccc
Q 008298 422 YRE 424 (570)
Q Consensus 422 A~~ 424 (570)
+.-
T Consensus 359 ~S~ 361 (508)
T KOG1365|consen 359 CSV 361 (508)
T ss_pred ccH
Confidence 653
No 145
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=81.51 E-value=1.5 Score=50.36 Aligned_cols=98 Identities=11% Similarity=0.046 Sum_probs=75.6
Q ss_pred CCCCCcceecccccccccccCCCCCCCCCCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEE
Q 008298 315 RPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTF 394 (570)
Q Consensus 315 r~~GQ~~vvl~eda~K~~~~r~dr~d~g~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF 394 (570)
.|.-+...|++..++ +..+.-.+....+...++|||++ ...+..+-++.+....|-|..+.... |||..|
T Consensus 11 ~P~~~~~~~~~~~~p----~~~p~qp~~~~~~~~~~vfv~~~-~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f 80 (668)
T KOG2253|consen 11 MPMMPQVPMVGNGVP----YVVPIQPVFQPLPPRDTVFVGNI-SYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEF 80 (668)
T ss_pred CCCCCCCccccCCcc----cccCCcccccCCCCCceeEecch-hhhhhHHHHHHHHhhCCcchhhhhhh-----hcccch
Confidence 333344445555444 22233334455677789999999 88888899999999999998887765 999999
Q ss_pred CCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 395 VFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 395 ~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
........|+..+....++|..+.++.-
T Consensus 81 ~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 81 LKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred hhHHHHHHHHHHhcccCCCcchhhccch
Confidence 9999999999999999999998888774
No 146
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=80.63 E-value=0.88 Score=30.59 Aligned_cols=19 Identities=32% Similarity=0.952 Sum_probs=17.1
Q ss_pred cccccccc-cCCCCCCCcccc
Q 008298 194 VCHYFNKG-FCKHGNNCRYFH 213 (570)
Q Consensus 194 pC~YFarG-~Ck~G~~Cry~H 213 (570)
.|.|..+| .|.. .+|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 69999998 9987 8999998
No 147
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=78.87 E-value=0.99 Score=48.30 Aligned_cols=23 Identities=39% Similarity=1.208 Sum_probs=16.9
Q ss_pred Ccccccccc-ccCCCCCCCccccC
Q 008298 192 VKVCHYFNK-GFCKHGNNCRYFHG 214 (570)
Q Consensus 192 ~kpC~YFar-G~Ck~G~~Cry~Hg 214 (570)
.++|.||+. |.|.+|..|.|.|+
T Consensus 105 ~rec~ff~~~g~c~~~~~c~y~h~ 128 (325)
T KOG1040|consen 105 MRECKFFSLFGECTNGKDCPYLHG 128 (325)
T ss_pred cccccccccccccccccCCcccCC
Confidence 457777765 77777777777777
No 148
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=74.56 E-value=1.7 Score=45.80 Aligned_cols=23 Identities=39% Similarity=0.732 Sum_probs=21.3
Q ss_pred Ccccccc-ccccCCCCCCCccccC
Q 008298 192 VKVCHYF-NKGFCKHGNNCRYFHG 214 (570)
Q Consensus 192 ~kpC~YF-arG~Ck~G~~Cry~Hg 214 (570)
..||.|| .+|.|..|.+|.|.|.
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~ 157 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHI 157 (285)
T ss_pred CCCcccccccceeccCCCCCcccc
Confidence 5689999 7899999999999998
No 149
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=73.01 E-value=1.3 Score=47.27 Aligned_cols=23 Identities=30% Similarity=0.918 Sum_probs=21.4
Q ss_pred CccccccccccCCCCCC-CccccC
Q 008298 192 VKVCHYFNKGFCKHGNN-CRYFHG 214 (570)
Q Consensus 192 ~kpC~YFarG~Ck~G~~-Cry~Hg 214 (570)
.-+|.=|.||.|+||.. |+|.|=
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP 60 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHP 60 (331)
T ss_pred HHHHHHHHhccccCCCccccccCC
Confidence 56899999999999999 999995
No 150
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=71.86 E-value=2.2 Score=44.86 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=64.3
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec----cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~----D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
...++|+|.+ .+.+.+.+...++.++|.+..+.+.. +.++|++.|.|+..+.+..|++..-...+.++.+.....
T Consensus 87 ~~~~~f~g~~-s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGEL-SENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccc-ccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4679999999 88888888999999999988887766 278999999999999999999985555777776665554
Q ss_pred cccc
Q 008298 423 REKS 426 (570)
Q Consensus 423 ~~K~ 426 (570)
..+.
T Consensus 166 ~~~~ 169 (285)
T KOG4210|consen 166 TRRG 169 (285)
T ss_pred cccc
Confidence 4443
No 151
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=70.17 E-value=17 Score=32.12 Aligned_cols=55 Identities=24% Similarity=0.385 Sum_probs=41.3
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN 408 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mn 408 (570)
..-.||+++ ...-..||.++|+.||.|.=--| .-.-|||...+.+.|..|+..+.
T Consensus 9 dHVFhltFP--keWK~~DI~qlFspfG~I~VsWi----~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLTFP--KEWKTSDIYQLFSPFGQIYVSWI----NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE----TT--HHHHHHHCCCCCCEEEEEE----CTTEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEeCc--hHhhhhhHHHHhccCCcEEEEEE----cCCcEEEEeecHHHHHHHHHHhc
Confidence 457888987 55678999999999999854433 45579999999999999888754
No 152
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=68.15 E-value=11 Score=31.30 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHhhcCCCe-----eEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 359 STFTEQDVSNYFSKFGPV-----QDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 359 ~~~TEedLr~~FsqFG~V-----~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
..++..+|-.++..-+.| -.|+| ...|.||.-.. +.|+.+++.+++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I----~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDI----FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEE----eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 567888888888876544 45666 45699999654 5788899999999999999999875
No 153
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=66.58 E-value=2.3 Score=44.87 Aligned_cols=23 Identities=35% Similarity=1.080 Sum_probs=21.3
Q ss_pred CccccccccccCCCCCCCccccC
Q 008298 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 192 ~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
.-.|-||-.|.|..|..|.|.|+
T Consensus 92 SvvCafFk~g~C~KG~kCKFsHd 114 (343)
T KOG1763|consen 92 SVVCAFFKQGTCTKGDKCKFSHD 114 (343)
T ss_pred HHHHHHHhccCCCCCCcccccch
Confidence 34799999999999999999998
No 154
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=65.62 E-value=2.6 Score=42.95 Aligned_cols=22 Identities=36% Similarity=1.118 Sum_probs=19.3
Q ss_pred cccccc-ccccCCCCCCCccccC
Q 008298 193 KVCHYF-NKGFCKHGNNCRYFHG 214 (570)
Q Consensus 193 kpC~YF-arG~Ck~G~~Cry~Hg 214 (570)
--|.|+ +.|.|..|..|||+|.
T Consensus 207 vycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 207 VYCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred eEEEEecCCCcccCCceeeeecc
Confidence 458887 6799999999999997
No 155
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=64.25 E-value=3.9 Score=43.84 Aligned_cols=26 Identities=31% Similarity=0.848 Sum_probs=23.9
Q ss_pred CCCCccccccccccCCCCCCCccccC
Q 008298 189 EFPVKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 189 ~~~~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
..+-..|.||.+|.|+.|..|-|+|-
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHE 99 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhh
Confidence 55788999999999999999999996
No 156
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=62.52 E-value=3.6 Score=43.23 Aligned_cols=27 Identities=41% Similarity=1.024 Sum_probs=24.2
Q ss_pred CCCCCcccccccc-ccCCC-CCCCccccC
Q 008298 188 PEFPVKVCHYFNK-GFCKH-GNNCRYFHG 214 (570)
Q Consensus 188 ~~~~~kpC~YFar-G~Ck~-G~~Cry~Hg 214 (570)
..+.-..|-+|.+ |.|+. |.+|+|.||
T Consensus 128 ~~~kt~lc~~~~~~g~c~y~ge~crfah~ 156 (332)
T KOG1677|consen 128 ERYKTPLCRSFRKSGTCKYRGEQCRFAHG 156 (332)
T ss_pred ccccCCcceeeecCccccccCchhhhcCC
Confidence 4677889999987 99999 999999998
No 157
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=53.36 E-value=14 Score=36.03 Aligned_cols=66 Identities=9% Similarity=0.071 Sum_probs=44.8
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhc-CCCe---eEEEeecc------CCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSK-FGPV---QDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~Fsq-FG~V---~~VrI~~D------~sRGFGFVtF~~~e~A~~Al~~mng~~i~G 414 (570)
..+|.|.+| ++.+||+++.+..+. +|.. ..+.-..+ ..-.-|+|.|.+.+++..-...++|+.+.+
T Consensus 7 ~~KvVIR~L-PP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 7 GTKVVIRRL-PPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp --EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred CceEEEeCC-CCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 359999999 999999999997776 6666 23321111 122348999999999999999999977744
No 158
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=53.14 E-value=70 Score=29.18 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=49.8
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG-~V~~VrI~~D--~sRGFGFVtF~~~e~A~~Al~~mng~~i~G 414 (570)
...+-+..+ ++.++-++|..+.+.+- .|..++|++| ..|=...++|.+.+.|..=....||..++.
T Consensus 13 ~~~~~l~vp-~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVP-PYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeC-cccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344555555 77777788876666654 6778899997 466678999999999999999989876643
No 159
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=47.85 E-value=3.7 Score=41.97 Aligned_cols=64 Identities=30% Similarity=0.377 Sum_probs=52.1
Q ss_pred CCEEEEcC----CCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEE
Q 008298 348 SRQIYLTF----PAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFV 412 (570)
Q Consensus 348 ~rtIfVg~----L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i 412 (570)
..|++-|+ | +..++++.+.+.|++-|+|+.+++..+ +.|.++||++.....+-.++..-.+...
T Consensus 80 q~~~r~G~shapl-d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 80 QRTLRCGNSHAPL-DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hcccccCCCcchh-hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 34556666 5 678899999999999999999999985 7899999999988888888776544433
No 160
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=47.46 E-value=35 Score=39.24 Aligned_cols=67 Identities=16% Similarity=0.081 Sum_probs=48.7
Q ss_pred CCEEE-EcCCCCCCCCHHHHHHHhhc--CCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEEE
Q 008298 348 SRQIY-LTFPAESTFTEQDVSNYFSK--FGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVL 418 (570)
Q Consensus 348 ~rtIf-Vg~L~~~~~TEedLr~~Fsq--FG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mn--g~~i~GR~V~ 418 (570)
.|+|. +.-| +.++-+|+|+.+|.- +=++.+|.... .- ==||||++..+|+.|++.+. -..|.|+.|.
T Consensus 174 kRcIvilREI-pettp~e~Vk~lf~~encPk~iscefa~--N~-nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREI-PETTPIEVVKALFKGENCPKVISCEFAH--ND-NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeec-CCCChHHHHHHHhccCCCCCceeeeeee--cC-ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34554 4556 888889999999964 66888887765 22 24999999999999988762 3556666554
No 161
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=47.07 E-value=14 Score=43.99 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=63.6
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeE--EcCeEEEEee
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHF--VCGARVLVKP 421 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~--i~GR~V~Vk~ 421 (570)
.-|...+.++.+. .-..+...|..+|++||.|.+++..+ .-..+.|.|...+.|-.|++++.|.. .-|-..+|..
T Consensus 294 v~plqp~~~~~nn-~v~~tSssL~~l~s~yg~v~s~wtlr--~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ 370 (1007)
T KOG4574|consen 294 VFPLQPKQSLENN-AVNLTSSSLATLCSDYGSVASAWTLR--DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSF 370 (1007)
T ss_pred cccCcchhhhhcc-cccchHHHHHHHHHhhcchhhheecc--cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEe
Confidence 3445557777777 66788899999999999999999987 44569999999999999999987754 4677888888
Q ss_pred ccc
Q 008298 422 YRE 424 (570)
Q Consensus 422 A~~ 424 (570)
|+.
T Consensus 371 ak~ 373 (1007)
T KOG4574|consen 371 AKT 373 (1007)
T ss_pred ccc
Confidence 765
No 162
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=42.86 E-value=11 Score=38.45 Aligned_cols=22 Identities=45% Similarity=1.055 Sum_probs=15.3
Q ss_pred CccccccccccCCCCCCCccccC
Q 008298 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 192 ~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
-.-|.||--|-|.+ -+|||+|=
T Consensus 261 ipacryfllgkcnn-pncryvhi 282 (377)
T KOG1492|consen 261 IPACRYFLLGKCNN-PNCRYVHI 282 (377)
T ss_pred cchhhhhhhccCCC-CCceEEEE
Confidence 34577777777776 67777775
No 163
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=40.80 E-value=14 Score=39.40 Aligned_cols=27 Identities=33% Similarity=0.861 Sum_probs=24.2
Q ss_pred CCCCCcccccccc-ccCCCCCCCccccC
Q 008298 188 PEFPVKVCHYFNK-GFCKHGNNCRYFHG 214 (570)
Q Consensus 188 ~~~~~kpC~YFar-G~Ck~G~~Cry~Hg 214 (570)
..|.-+||.-+.+ |||.-|.-|.|.||
T Consensus 270 ~~frTePcinwe~sGyc~yg~Rc~F~hg 297 (351)
T COG5063 270 QNFRTEPCINWEKSGYCPYGLRCCFKHG 297 (351)
T ss_pred cccccCCccchhhcccCccccccccccC
Confidence 3566799999988 99999999999999
No 164
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=38.02 E-value=16 Score=38.62 Aligned_cols=25 Identities=36% Similarity=0.984 Sum_probs=22.9
Q ss_pred CCCccccccccccCCCCCCCccccC
Q 008298 190 FPVKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 190 ~~~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
-.--+|.+|-+|-|+.|..|.|+|+
T Consensus 102 ~s~V~c~~~~~g~c~s~~~c~~lh~ 126 (285)
T COG5084 102 SSSVVCKFFLRGLCKSGFSCEFLHE 126 (285)
T ss_pred cCCcccchhccccCcCCCccccccC
Confidence 3566999999999999999999999
No 165
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=35.65 E-value=17 Score=38.97 Aligned_cols=28 Identities=32% Similarity=0.679 Sum_probs=23.4
Q ss_pred CCCCCCCccccccccccCCCCCCCccccC
Q 008298 186 SLPEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 186 ~~~~~~~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
.++....--|+=+.||-|.| .+|||+|.
T Consensus 65 ~V~~g~v~aC~Ds~kgrCsR-~nCkylHp 92 (331)
T KOG2494|consen 65 QVSNGRVIACFDSQKGRCSR-ENCKYLHP 92 (331)
T ss_pred CccCCeEEEEeccccCccCc-ccceecCC
Confidence 34566677899999999999 66999998
No 166
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=35.11 E-value=15 Score=37.05 Aligned_cols=24 Identities=29% Similarity=1.031 Sum_probs=19.0
Q ss_pred CCcccccc-ccccCCCCCCCccccC
Q 008298 191 PVKVCHYF-NKGFCKHGNNCRYFHG 214 (570)
Q Consensus 191 ~~kpC~YF-arG~Ck~G~~Cry~Hg 214 (570)
-.-.|.=| ..|||--|.+|+|+|-
T Consensus 140 qpdVCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 140 QPDVCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred CcccccchhhcccccCCchhhhhhh
Confidence 34456655 5599999999999997
No 167
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.50 E-value=1.2e+02 Score=35.16 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=57.1
Q ss_pred CCCCCEEEEcCCCCC-CCCHHHHHHHhhcC----CCeeEEEeec---c----------CC--------------------
Q 008298 345 VAGSRQIYLTFPAES-TFTEQDVSNYFSKF----GPVQDVRIPC---Q----------QK-------------------- 386 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~-~~TEedLr~~FsqF----G~V~~VrI~~---D----------~s-------------------- 386 (570)
+..+++|-|-|+ +| .+..+||--+|+.| |.|.+|.|-. + ..
T Consensus 171 ~~~T~RLAVvNM-DWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVNM-DWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEecc-ccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 456889999999 87 57789999999876 6999998854 1 01
Q ss_pred ---------C---------ceEEEEECCHHHHHHHHHhCCCeEEcCeEE
Q 008298 387 ---------R---------MFGFVTFVFAETVKQILAKGNPHFVCGARV 417 (570)
Q Consensus 387 ---------R---------GFGFVtF~~~e~A~~Al~~mng~~i~GR~V 417 (570)
| =||.|+|.+.++|.++++...|..+...-.
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~ 298 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSAN 298 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccc
Confidence 1 279999999999999999999988865433
No 168
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=33.30 E-value=2.8e+02 Score=23.18 Aligned_cols=56 Identities=11% Similarity=0.197 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 359 STFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 359 ~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
-.++-++++..+..|+- .+| ..| .-|| ||.|.+.++|+++....++..+.+.++.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~~I--~~d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-DRI--RDD-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc-ceE--Eec-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46788999999999974 233 332 3443 89999999999999999999988887654
No 169
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.81 E-value=1.6e+02 Score=33.21 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=55.9
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcC-CCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKF-GPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqF-G~V~~VrI~~D--~sRGFGFVtF~~~e~A~~Al~~mng~~i~G 414 (570)
+..|+|-.+ +-.+|-.||-.|...| -.|.+++|++| ..|=...|+|.+.++|..-++..||..|+.
T Consensus 74 ~~mLcilaV-P~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAV-PAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEec-cccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 788999999 7789999998888765 47889999997 456568999999999999999999977643
No 170
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=26.51 E-value=97 Score=25.83 Aligned_cols=18 Identities=17% Similarity=0.613 Sum_probs=15.9
Q ss_pred HHHHHHhhcCCCeeEEEe
Q 008298 364 QDVSNYFSKFGPVQDVRI 381 (570)
Q Consensus 364 edLr~~FsqFG~V~~VrI 381 (570)
.+||++|++.|+|.-+.|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999987766
No 171
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.27 E-value=55 Score=34.86 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=15.2
Q ss_pred hHHhhhhHHHHHHHHHHHHHH--HHHh
Q 008298 464 SRLLRKQLMEEHEQAIELERR--RLSE 488 (570)
Q Consensus 464 er~lrrk~~E~~~q~lE~q~~--~l~~ 488 (570)
++.|.||.+|..+++.|+.|| ++.+
T Consensus 66 q~eL~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 66 QAELLKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 345666666766666666666 4444
No 172
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=25.48 E-value=26 Score=36.33 Aligned_cols=22 Identities=36% Similarity=0.964 Sum_probs=20.7
Q ss_pred ccccccccccCCCCCCCccccC
Q 008298 193 KVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 193 kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
-.|-.|.-|-|..|..|.|.||
T Consensus 86 ~vcalF~~~~c~kg~~ckF~h~ 107 (299)
T COG5252 86 VVCALFLNKTCAKGDACKFAHG 107 (299)
T ss_pred HHHHHhccCccccCchhhhhcc
Confidence 4799999999999999999999
No 173
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=24.48 E-value=35 Score=35.61 Aligned_cols=28 Identities=25% Similarity=0.781 Sum_probs=25.1
Q ss_pred CCCCCCccccccccccCCCCCCCccccC
Q 008298 187 LPEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 187 ~~~~~~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
+..+.-.+|-.|-++.|.+|.-|-|.|-
T Consensus 147 vT~~rea~C~~~e~~~C~rG~~CnFmH~ 174 (260)
T KOG2202|consen 147 VTDFREAICGQFERTECSRGGACNFMHV 174 (260)
T ss_pred cCchhhhhhcccccccCCCCCcCcchhh
Confidence 4566778999999999999999999997
No 174
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=24.23 E-value=1.5e+02 Score=34.19 Aligned_cols=77 Identities=9% Similarity=0.054 Sum_probs=51.0
Q ss_pred EEEEcCCCCCCCCHHHHHHHhh-cCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEc----CeEEEEe
Q 008298 350 QIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC----GARVLVK 420 (570)
Q Consensus 350 tIfVg~L~~~~~TEedLr~~Fs-qFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~----GR~V~Vk 420 (570)
++-|.++ +-..|-..|.+.-. ..|.=.-+.++.| ...|||||.|.+++.+..+.++.||..++ .+.+.+.
T Consensus 390 t~~ikni-pNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 390 TLMIKNI-PNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhHhhcc-CchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 4555565 44444444444422 3666667777776 45799999999999999999998886653 3455566
Q ss_pred ecccccc
Q 008298 421 PYREKSR 427 (570)
Q Consensus 421 ~A~~K~k 427 (570)
+|.-.++
T Consensus 469 YArIQGk 475 (549)
T KOG4660|consen 469 YARIQGK 475 (549)
T ss_pred hhhhhch
Confidence 6654444
No 175
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=21.43 E-value=60 Score=29.81 Aligned_cols=44 Identities=16% Similarity=0.334 Sum_probs=27.0
Q ss_pred CCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCH-HHHHHHHH
Q 008298 361 FTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFA-ETVKQILA 405 (570)
Q Consensus 361 ~TEedLr~~FsqFG~V~~VrI~~D--~sRGFGFVtF~~~-e~A~~Al~ 405 (570)
.+.+.|++.|+.|.+++ |+..++ -+.|++.|.|... .....|+.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 35588999999999974 777775 4689999999864 44444444
No 176
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=21.20 E-value=61 Score=36.93 Aligned_cols=26 Identities=38% Similarity=0.830 Sum_probs=19.9
Q ss_pred ccccc-ccccCCCCCCCccccCCCCCC
Q 008298 194 VCHYF-NKGFCKHGNNCRYFHGHPMPE 219 (570)
Q Consensus 194 pC~YF-arG~Ck~G~~Cry~Hg~~~~~ 219 (570)
-|-+| ++|+|..|-+|||+-++...+
T Consensus 116 ~Cp~f~s~G~Cp~G~~CRFl~aHld~~ 142 (614)
T KOG2333|consen 116 SCPVFESLGFCPYGFKCRFLGAHLDIE 142 (614)
T ss_pred ccceeeccccCCccceeehhhcccCcc
Confidence 36555 669999999999988765443
No 177
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.05 E-value=48 Score=36.01 Aligned_cols=26 Identities=42% Similarity=0.930 Sum_probs=23.6
Q ss_pred CCCCcccccccc--ccCCCCCCCccccC
Q 008298 189 EFPVKVCHYFNK--GFCKHGNNCRYFHG 214 (570)
Q Consensus 189 ~~~~kpC~YFar--G~Ck~G~~Cry~Hg 214 (570)
+...+.|.||.+ |.|..|+.|-|.|-
T Consensus 246 ~~s~~~c~yf~~~~g~cPf~s~~~y~h~ 273 (344)
T KOG1039|consen 246 EMSAKDCKYFSQGLGSCPFGSKCFYKHL 273 (344)
T ss_pred HhhccchhhhcCCCCCCCCCCccccccc
Confidence 567899999987 89999999999997
No 178
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.62 E-value=39 Score=36.06 Aligned_cols=26 Identities=23% Similarity=1.048 Sum_probs=20.1
Q ss_pred CCCCcccccc-ccccCCCCCCCccccC
Q 008298 189 EFPVKVCHYF-NKGFCKHGNNCRYFHG 214 (570)
Q Consensus 189 ~~~~kpC~YF-arG~Ck~G~~Cry~Hg 214 (570)
.+..-+|-=| --|||.-|.+|.|+|-
T Consensus 183 d~qpDicKdykeTgycg~gdSckFlh~ 209 (313)
T KOG1813|consen 183 DYQPDICKDYKETGYCGYGDSCKFLHD 209 (313)
T ss_pred ecCchhhhhhHhhCcccccchhhhhhh
Confidence 3445567654 4599999999999996
Done!