Query 008298
Match_columns 570
No_of_seqs 361 out of 1823
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 22:54:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1l_A PRE-mRNA-splicing facto 99.9 4.6E-25 1.6E-29 220.1 7.1 93 334-429 120-233 (240)
2 4f25_A Polyadenylate-binding p 99.7 1.3E-17 4.4E-22 146.5 9.4 81 347-428 4-86 (115)
3 4fxv_A ELAV-like protein 1; RN 99.7 1.7E-17 5.9E-22 142.7 10.0 77 347-424 18-98 (99)
4 3s8s_A Histone-lysine N-methyl 99.7 4.1E-17 1.4E-21 143.2 11.3 81 346-427 4-88 (110)
5 2lxi_A RNA-binding protein 10; 99.7 1.2E-17 4E-22 141.3 7.4 80 348-428 1-86 (91)
6 3mdf_A Peptidyl-prolyl CIS-tra 99.7 8.2E-17 2.8E-21 132.1 9.9 80 343-423 2-85 (85)
7 1whw_A Hypothetical protein ri 99.7 1.6E-16 5.6E-21 134.4 11.8 83 345-428 5-91 (99)
8 3bs9_A Nucleolysin TIA-1 isofo 99.7 8.6E-17 2.9E-21 132.5 9.2 80 346-426 4-87 (87)
9 3md1_A Nuclear and cytoplasmic 99.7 1.2E-16 3.9E-21 130.7 9.7 78 348-426 1-82 (83)
10 2cqi_A Nucleolysin TIAR; RNA r 99.7 3E-16 1E-20 133.9 12.6 83 344-427 11-95 (103)
11 4f02_A Polyadenylate-binding p 99.7 2.8E-17 9.4E-22 157.8 6.8 83 347-430 102-186 (213)
12 2cq3_A RNA-binding protein 9; 99.7 3.7E-16 1.3E-20 133.3 12.9 84 344-428 11-96 (103)
13 2e5h_A Zinc finger CCHC-type a 99.7 3.6E-16 1.2E-20 130.8 12.5 80 343-423 11-94 (94)
14 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.3E-16 4.5E-21 135.6 9.9 85 343-428 7-95 (102)
15 2x1f_A MRNA 3'-END-processing 99.7 2.7E-16 9.4E-21 132.7 11.7 84 347-431 1-88 (96)
16 2cq0_A Eukaryotic translation 99.7 1.8E-16 6E-21 135.3 10.4 84 344-428 11-98 (103)
17 2dgs_A DAZ-associated protein 99.7 1.9E-16 6.4E-21 134.2 10.4 84 343-428 5-92 (99)
18 1x5u_A Splicing factor 3B subu 99.7 2.9E-16 1E-20 134.2 11.4 84 344-428 11-98 (105)
19 4a8x_A RNA-binding protein wit 99.7 2.3E-16 7.9E-21 130.0 10.3 79 347-426 3-86 (88)
20 2dgx_A KIAA0430 protein; RRM d 99.7 3.3E-16 1.1E-20 132.9 11.3 81 346-427 7-92 (96)
21 1x5t_A Splicing factor 3B subu 99.7 1.5E-16 5.3E-21 133.6 9.1 83 346-429 3-90 (96)
22 2dnz_A Probable RNA-binding pr 99.7 2.1E-16 7.2E-21 132.5 9.7 82 346-428 3-88 (95)
23 1x4h_A RNA-binding protein 28; 99.7 5E-16 1.7E-20 133.7 12.0 84 344-428 11-104 (111)
24 1x4a_A Splicing factor, argini 99.7 5.9E-16 2E-20 133.6 12.4 82 345-427 19-101 (109)
25 2wbr_A GW182, gawky, LD47780P; 99.7 2.9E-16 1E-20 134.8 10.3 76 345-423 4-79 (89)
26 2do4_A Squamous cell carcinoma 99.7 3.1E-16 1.1E-20 133.1 10.2 82 345-427 14-98 (100)
27 1sjq_A Polypyrimidine tract-bi 99.7 1.9E-16 6.4E-21 139.6 8.9 82 345-429 13-96 (105)
28 2cqc_A Arginine/serine-rich sp 99.7 5.1E-16 1.7E-20 129.9 11.1 80 344-424 11-94 (95)
29 2dnm_A SRP46 splicing factor; 99.7 2E-16 6.8E-21 135.0 8.7 83 345-428 10-96 (103)
30 2dgo_A Cytotoxic granule-assoc 99.7 5.6E-16 1.9E-20 134.7 11.7 85 344-429 11-99 (115)
31 2e5j_A Methenyltetrahydrofolat 99.7 2.4E-16 8.2E-21 133.6 8.9 82 344-427 15-96 (97)
32 2jvr_A Nucleolar protein 3; RN 99.7 3.3E-16 1.1E-20 138.6 10.2 83 343-426 23-106 (111)
33 1x5s_A Cold-inducible RNA-bind 99.7 2.1E-16 7.2E-21 134.4 8.5 84 343-427 7-94 (102)
34 2cpf_A RNA binding motif prote 99.7 4.4E-16 1.5E-20 131.5 10.3 81 346-427 3-90 (98)
35 2err_A Ataxin-2-binding protei 99.6 3E-16 1E-20 136.5 9.4 83 343-426 24-108 (109)
36 2ytc_A PRE-mRNA-splicing facto 99.6 7.3E-16 2.5E-20 126.7 11.0 76 345-423 9-85 (85)
37 2lkz_A RNA-binding protein 5; 99.6 1.5E-16 5E-21 136.9 6.9 77 347-424 8-94 (95)
38 2dnh_A Bruno-like 5, RNA bindi 99.6 4.5E-16 1.5E-20 133.0 9.9 84 344-428 11-100 (105)
39 3ns6_A Eukaryotic translation 99.6 6.7E-17 2.3E-21 138.5 4.6 80 347-427 5-95 (100)
40 2cpz_A CUG triplet repeat RNA- 99.6 3.8E-16 1.3E-20 136.0 9.3 84 344-428 21-108 (115)
41 1s79_A Lupus LA protein; RRM, 99.6 2.2E-16 7.5E-21 137.2 7.5 77 346-424 9-88 (103)
42 1oo0_B CG8781-PA, drosophila Y 99.6 6E-16 2.1E-20 133.5 10.3 81 346-427 24-108 (110)
43 2d9p_A Polyadenylate-binding p 99.6 3.8E-16 1.3E-20 133.3 8.9 83 345-428 12-96 (103)
44 1p27_B RNA-binding protein 8A; 99.6 3.4E-16 1.2E-20 134.0 8.4 80 346-426 21-104 (106)
45 2la4_A Nuclear and cytoplasmic 99.6 4E-16 1.4E-20 132.7 8.7 77 346-425 25-101 (101)
46 1nu4_A U1A RNA binding domain; 99.6 4.5E-16 1.6E-20 130.9 8.9 85 346-431 6-95 (97)
47 2cph_A RNA binding motif prote 99.6 7.9E-16 2.7E-20 131.7 10.5 84 344-428 11-100 (107)
48 3p5t_L Cleavage and polyadenyl 99.6 8E-17 2.7E-21 134.9 4.1 78 349-427 2-85 (90)
49 2dgv_A HnRNP M, heterogeneous 99.6 4.1E-16 1.4E-20 130.0 8.2 82 345-427 5-88 (92)
50 2ywk_A Putative RNA-binding pr 99.6 5.7E-16 1.9E-20 129.8 9.0 79 345-424 13-94 (95)
51 2do0_A HnRNP M, heterogeneous 99.6 1.1E-15 3.8E-20 132.4 11.1 83 344-427 11-96 (114)
52 1x4c_A Splicing factor, argini 99.6 2.1E-15 7.1E-20 130.5 12.8 79 346-428 13-96 (108)
53 3ucg_A Polyadenylate-binding p 99.6 8.4E-16 2.9E-20 127.1 9.8 76 348-425 6-85 (89)
54 3r27_A HnRNP L, heterogeneous 99.6 7.5E-16 2.6E-20 134.7 10.0 81 343-426 16-98 (100)
55 2dgp_A Bruno-like 4, RNA bindi 99.6 6E-16 2E-20 132.5 9.1 83 344-427 9-98 (106)
56 2cpi_A CCR4-NOT transcription 99.6 4E-16 1.4E-20 135.9 8.0 80 346-426 13-102 (111)
57 2dnq_A RNA-binding protein 4B; 99.6 8.3E-16 2.8E-20 128.3 9.6 79 345-428 5-83 (90)
58 1u6f_A Tcubp1, RNA-binding pro 99.6 1.9E-15 6.6E-20 135.5 12.6 84 344-428 38-125 (139)
59 2a3j_A U1 small nuclear ribonu 99.6 5.7E-16 1.9E-20 140.0 9.2 86 345-431 26-116 (127)
60 2dh8_A DAZ-associated protein 99.6 8.3E-16 2.8E-20 131.6 9.7 82 345-428 13-98 (105)
61 2div_A TRNA selenocysteine ass 99.6 7.3E-16 2.5E-20 130.3 9.2 81 345-426 6-95 (99)
62 3s7r_A Heterogeneous nuclear r 99.6 1.4E-15 4.8E-20 125.7 10.7 76 345-422 8-87 (87)
63 2cq1_A PTB-like protein L; RRM 99.6 1.1E-15 3.8E-20 132.8 10.5 82 344-428 11-94 (101)
64 1x4d_A Matrin 3; structural ge 99.6 5.5E-16 1.9E-20 135.5 8.4 80 345-427 12-94 (102)
65 2rs2_A Musashi-1, RNA-binding 99.6 1.5E-15 5.1E-20 132.3 11.0 82 344-427 21-106 (109)
66 1why_A Hypothetical protein ri 99.6 1E-15 3.4E-20 129.5 9.5 80 345-427 14-95 (97)
67 2cqd_A RNA-binding region cont 99.6 2.5E-15 8.4E-20 131.0 12.2 81 345-427 14-98 (116)
68 2xnq_A Nuclear polyadenylated 99.6 1.7E-15 5.7E-20 129.3 10.8 79 343-426 17-96 (97)
69 1p1t_A Cleavage stimulation fa 99.6 5.2E-16 1.8E-20 132.1 7.6 84 347-431 7-94 (104)
70 1x4g_A Nucleolysin TIAR; struc 99.6 1.4E-15 4.6E-20 131.5 10.2 80 346-428 23-102 (109)
71 2fy1_A RNA-binding motif prote 99.6 7.9E-16 2.7E-20 135.6 8.9 83 346-429 5-90 (116)
72 2dgu_A Heterogeneous nuclear r 99.6 1.8E-15 6.1E-20 129.5 10.8 80 345-429 8-87 (103)
73 2ad9_A Polypyrimidine tract-bi 99.6 7E-16 2.4E-20 138.6 8.6 83 343-428 26-110 (119)
74 2dgt_A RNA-binding protein 30; 99.6 2.7E-15 9.3E-20 125.6 11.6 79 345-428 7-85 (92)
75 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.8E-15 9.5E-20 133.6 12.2 79 343-422 58-140 (140)
76 2dng_A Eukaryotic translation 99.6 2.1E-15 7.2E-20 128.9 10.9 80 345-427 12-95 (103)
77 2khc_A Testis-specific RNP-typ 99.6 1.5E-15 5.1E-20 132.6 10.2 78 345-423 37-118 (118)
78 2cpj_A Non-POU domain-containi 99.6 1.1E-15 3.7E-20 129.8 9.0 81 344-427 11-91 (99)
79 3md3_A Nuclear and cytoplasmic 99.6 2.1E-15 7.1E-20 135.7 11.4 80 344-424 83-166 (166)
80 2nlw_A Eukaryotic translation 99.6 1.5E-15 5.3E-20 130.9 10.0 81 346-427 13-102 (105)
81 3n9u_C Cleavage and polyadenyl 99.6 1.2E-15 4.2E-20 141.9 10.1 79 347-426 54-138 (156)
82 3d2w_A TAR DNA-binding protein 99.6 1.4E-15 4.7E-20 128.3 9.5 80 344-427 7-86 (89)
83 3lqv_A PRE-mRNA branch site pr 99.6 1.1E-15 3.8E-20 132.8 9.1 80 346-426 6-86 (115)
84 2jrs_A RNA-binding protein 39; 99.6 7.9E-16 2.7E-20 134.0 8.1 81 345-426 23-107 (108)
85 2dgw_A Probable RNA-binding pr 99.6 2.8E-15 9.7E-20 125.1 11.1 80 345-427 7-89 (91)
86 2cpe_A RNA-binding protein EWS 99.6 1.3E-15 4.5E-20 132.0 9.4 82 346-428 13-106 (113)
87 2la6_A RNA-binding protein FUS 99.6 9E-16 3.1E-20 130.3 8.2 80 343-423 8-99 (99)
88 2kxn_B Transformer-2 protein h 99.6 9.7E-16 3.3E-20 137.9 8.8 82 344-426 42-127 (129)
89 2kt5_A RNA and export factor-b 99.6 2.9E-15 1E-19 132.2 11.7 84 343-427 30-116 (124)
90 3ulh_A THO complex subunit 4; 99.6 1.9E-15 6.6E-20 129.5 10.1 79 344-423 25-106 (107)
91 3ex7_B RNA-binding protein 8A; 99.6 1.2E-15 4.1E-20 134.6 9.0 84 345-429 19-106 (126)
92 2cqp_A RNA-binding protein 12; 99.6 1.1E-15 3.8E-20 129.0 8.4 82 344-426 11-96 (98)
93 2cq4_A RNA binding motif prote 99.6 9.3E-16 3.2E-20 133.3 8.1 79 347-427 24-106 (114)
94 2dhg_A TRNA selenocysteine ass 99.6 9.3E-16 3.2E-20 130.8 7.7 82 346-428 7-93 (104)
95 2mss_A Protein (musashi1); RNA 99.6 6.3E-16 2.1E-20 124.4 6.2 71 350-422 1-75 (75)
96 1wi8_A EIF-4B, eukaryotic tran 99.6 3.7E-15 1.3E-19 127.5 11.4 80 346-428 13-97 (104)
97 1wex_A Hypothetical protein (r 99.6 1.2E-15 3.9E-20 133.3 8.4 80 345-427 12-93 (104)
98 2cqg_A TDP-43, TAR DNA-binding 99.6 4.9E-15 1.7E-19 126.4 12.0 81 345-428 12-96 (103)
99 2dnp_A RNA-binding protein 14; 99.6 2.6E-15 9E-20 125.2 10.1 78 345-427 6-83 (90)
100 1x4b_A Heterogeneous nuclear r 99.6 2.3E-15 7.8E-20 131.2 10.1 80 347-428 26-109 (116)
101 2kn4_A Immunoglobulin G-bindin 99.6 2.1E-15 7.2E-20 137.8 10.2 83 345-428 67-153 (158)
102 1x5p_A Negative elongation fac 99.6 8.3E-15 2.8E-19 124.0 13.1 78 346-428 13-90 (97)
103 2cpd_A Apobec-1 stimulating pr 99.6 7.4E-15 2.5E-19 124.6 12.8 79 344-427 11-91 (99)
104 1h2v_Z 20 kDa nuclear CAP bind 99.6 3.3E-15 1.1E-19 136.9 11.1 83 344-427 35-121 (156)
105 2cpy_A RNA-binding protein 12; 99.6 2.3E-15 8E-20 131.6 9.5 81 345-427 12-96 (114)
106 2j76_E EIF-4B, EIF4B, eukaryot 99.6 7.5E-16 2.6E-20 131.6 6.1 79 345-426 16-99 (100)
107 2dis_A Unnamed protein product 99.6 2.1E-15 7E-20 129.7 8.8 82 346-428 6-95 (109)
108 2i2y_A Fusion protein consists 99.6 2.1E-15 7.1E-20 137.4 9.0 81 344-426 69-149 (150)
109 2cqh_A IGF-II mRNA-binding pro 99.6 1.2E-15 4.3E-20 127.7 6.8 80 345-428 5-86 (93)
110 2jvo_A Nucleolar protein 3; nu 99.6 3.2E-15 1.1E-19 130.3 9.7 78 345-427 28-105 (108)
111 2hvz_A Splicing factor, argini 99.6 8.8E-16 3E-20 130.5 5.9 78 349-428 1-78 (101)
112 1wg5_A Heterogeneous nuclear r 99.6 3.5E-15 1.2E-19 128.5 9.6 78 346-425 13-94 (104)
113 2fc9_A NCL protein; structure 99.6 6.2E-15 2.1E-19 125.3 10.9 80 344-427 11-93 (101)
114 2ek1_A RNA-binding protein 12; 99.6 1E-15 3.4E-20 128.4 5.8 78 345-423 12-93 (95)
115 2m2b_A RNA-binding protein 10; 99.6 8.1E-16 2.8E-20 137.7 5.6 81 345-427 20-110 (131)
116 1x4e_A RNA binding motif, sing 99.6 5.5E-16 1.9E-20 127.6 4.1 77 346-423 3-83 (85)
117 2kvi_A Nuclear polyadenylated 99.6 1.4E-15 4.8E-20 128.8 6.7 79 345-428 7-86 (96)
118 2jwn_A Embryonic polyadenylate 99.6 3E-15 1E-19 131.8 8.9 77 348-426 36-116 (124)
119 2cpx_A Hypothetical protein FL 99.6 3.4E-15 1.2E-19 129.5 8.9 83 345-428 22-108 (115)
120 2krb_A Eukaryotic translation 99.6 1.5E-15 5.2E-20 124.5 6.4 71 348-419 1-80 (81)
121 1l3k_A Heterogeneous nuclear r 99.6 5.9E-15 2E-19 137.0 11.1 83 346-430 102-188 (196)
122 2ki2_A SS-DNA binding protein 99.6 4.7E-16 1.6E-20 129.4 3.2 78 349-428 2-83 (90)
123 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.1E-15 3.7E-20 123.2 5.2 72 349-422 1-76 (77)
124 1whx_A Hypothetical protein ri 99.6 2.8E-15 9.7E-20 131.1 8.1 76 347-425 9-84 (111)
125 1x4f_A Matrin 3; structural ge 99.6 1.8E-15 6.3E-20 134.5 6.9 81 345-428 22-105 (112)
126 2cq2_A Hypothetical protein LO 99.6 5.5E-15 1.9E-19 132.1 9.4 79 346-427 23-108 (114)
127 2db1_A Heterogeneous nuclear r 99.6 2.8E-15 9.6E-20 132.4 7.3 79 346-426 15-99 (118)
128 1rk8_A CG8781-PA, CG8781-PA pr 99.6 5.9E-15 2E-19 137.0 9.6 83 346-429 70-156 (165)
129 1wf1_A RNA-binding protein RAL 99.6 6.9E-15 2.3E-19 127.3 9.2 77 345-426 24-101 (110)
130 2adc_A Polypyrimidine tract-bi 99.6 1.2E-14 4E-19 141.0 11.7 81 343-425 29-110 (229)
131 2hgl_A HNRPF protein, heteroge 99.6 3.1E-15 1.1E-19 136.8 7.2 80 345-426 41-126 (136)
132 2dnn_A RNA-binding protein 12; 99.6 7.2E-15 2.5E-19 129.4 9.1 75 348-425 16-93 (109)
133 2lea_A Serine/arginine-rich sp 99.6 2.6E-15 8.8E-20 136.0 6.3 82 346-428 45-130 (135)
134 1fj7_A Nucleolin RBD1, protein 99.6 1.3E-15 4.5E-20 129.4 3.9 80 346-428 15-98 (101)
135 2e44_A Insulin-like growth fac 99.6 9.1E-15 3.1E-19 122.9 8.8 79 346-425 13-92 (96)
136 1fjc_A Nucleolin RBD2, protein 99.6 6.2E-15 2.1E-19 123.9 7.7 80 346-427 14-93 (96)
137 2cjk_A Nuclear polyadenylated 99.5 2.5E-15 8.6E-20 136.1 5.6 77 347-425 86-166 (167)
138 1iqt_A AUF1, heterogeneous nuc 99.5 2.2E-15 7.6E-20 120.9 4.4 71 350-422 1-75 (75)
139 1wf0_A TDP-43, TAR DNA-binding 99.5 7.2E-15 2.5E-19 122.1 7.5 78 346-427 3-80 (88)
140 1wg1_A KIAA1579 protein, homol 99.5 1.1E-14 3.9E-19 121.3 8.6 76 347-426 4-79 (88)
141 1wel_A RNA-binding protein 12; 99.5 2E-15 7E-20 133.7 4.3 80 345-426 22-105 (124)
142 1wez_A HnRNP H', FTP-3, hetero 99.5 5.7E-15 1.9E-19 127.6 7.0 79 345-426 12-93 (102)
143 2lmi_A GRSF-1, G-rich sequence 99.5 3E-15 1E-19 129.5 5.1 80 345-426 8-93 (107)
144 1x5o_A RNA binding motif, sing 99.5 1.1E-14 3.9E-19 126.3 8.4 79 346-425 23-112 (114)
145 2e5g_A U6 snRNA-specific termi 99.5 1.6E-14 5.4E-19 121.6 9.1 79 346-427 6-84 (94)
146 2xs2_A Deleted in azoospermia- 99.5 4.8E-15 1.6E-19 126.2 5.9 80 347-429 8-90 (102)
147 2qfj_A FBP-interacting repress 99.5 3.7E-15 1.3E-19 140.4 5.7 81 346-427 123-207 (216)
148 3egn_A RNA-binding protein 40; 99.5 9.1E-15 3.1E-19 132.1 7.9 84 345-429 42-134 (143)
149 3q2s_C Cleavage and polyadenyl 99.5 5.8E-15 2E-19 145.2 6.9 79 347-426 67-151 (229)
150 1sjr_A Polypyrimidine tract-bi 99.5 1.9E-14 6.5E-19 136.2 9.3 78 348-426 46-125 (164)
151 3tyt_A Heterogeneous nuclear r 99.5 2.9E-14 1E-18 137.6 10.7 79 346-426 2-81 (205)
152 1fje_B Nucleolin RBD12, protei 99.5 3.8E-14 1.3E-18 129.8 10.7 79 346-426 97-175 (175)
153 2hzc_A Splicing factor U2AF 65 99.5 2.9E-14 1E-18 117.3 8.9 72 346-421 4-86 (87)
154 1qm9_A Polypyrimidine tract-bi 99.5 2E-14 6.8E-19 134.8 8.9 78 347-426 2-80 (198)
155 4f02_A Polyadenylate-binding p 99.5 3E-14 1E-18 136.6 9.9 81 346-427 13-97 (213)
156 2lcw_A RNA-binding protein FUS 99.3 1.2E-15 4.1E-20 133.3 0.0 82 346-428 5-98 (116)
157 2fc8_A NCL protein; structure 99.5 3.2E-14 1.1E-18 120.9 8.8 81 344-428 11-95 (102)
158 2bz2_A Negative elongation fac 99.5 2.2E-14 7.4E-19 127.9 8.0 78 346-428 37-114 (121)
159 1b7f_A Protein (SXL-lethal pro 99.5 4.6E-14 1.6E-18 127.6 9.8 79 347-426 2-84 (168)
160 1fxl_A Paraneoplastic encephal 99.5 5.8E-14 2E-18 126.3 10.2 79 348-427 2-84 (167)
161 1b7f_A Protein (SXL-lethal pro 99.5 5.2E-14 1.8E-18 127.3 9.5 76 346-422 87-168 (168)
162 2dha_A FLJ20171 protein; RRM d 99.5 1.4E-14 4.8E-19 130.3 5.7 78 347-426 22-106 (123)
163 2f3j_A RNA and export factor b 99.5 5.6E-14 1.9E-18 133.1 9.7 83 344-427 84-169 (177)
164 3md3_A Nuclear and cytoplasmic 99.5 4.7E-14 1.6E-18 126.8 8.7 77 349-426 1-80 (166)
165 3nmr_A Cugbp ELAV-like family 99.5 7.4E-14 2.5E-18 126.8 9.9 77 346-423 93-175 (175)
166 1fxl_A Paraneoplastic encephal 99.5 4E-14 1.4E-18 127.4 7.9 76 346-422 86-167 (167)
167 3beg_B Splicing factor, argini 99.5 2.1E-14 7.1E-19 126.1 5.8 76 347-426 15-95 (115)
168 2hgn_A Heterogeneous nuclear r 99.5 1.2E-14 4.2E-19 133.4 4.2 80 346-428 44-126 (139)
169 1l3k_A Heterogeneous nuclear r 99.5 6.7E-14 2.3E-18 129.9 9.0 80 346-427 11-94 (196)
170 3zzy_A Polypyrimidine tract-bi 99.5 1.4E-13 4.9E-18 125.6 10.5 76 349-426 29-107 (130)
171 2hgm_A HNRPF protein, heteroge 99.5 4E-14 1.4E-18 128.1 6.7 77 346-425 40-121 (126)
172 2e5i_A Heterogeneous nuclear r 99.5 1.5E-13 5.3E-18 124.1 9.9 74 350-426 27-103 (124)
173 2dnl_A Cytoplasmic polyadenyla 99.5 1.7E-13 5.7E-18 119.8 9.7 76 346-425 6-88 (114)
174 3pgw_S U1-70K; protein-RNA com 99.5 1.8E-13 6.2E-18 146.7 11.8 82 345-427 99-184 (437)
175 2yh0_A Splicing factor U2AF 65 99.5 1.3E-13 4.4E-18 128.2 9.3 81 346-427 112-196 (198)
176 2ghp_A U4/U6 snRNA-associated 99.5 3.6E-13 1.2E-17 133.7 12.8 81 344-426 206-292 (292)
177 2pe8_A Splicing factor 45; RRM 99.4 2.6E-13 8.9E-18 118.6 10.1 79 346-424 6-93 (105)
178 2g4b_A Splicing factor U2AF 65 99.4 1.3E-13 4.4E-18 125.4 8.4 77 346-423 92-172 (172)
179 2dit_A HIV TAT specific factor 99.4 4.5E-13 1.5E-17 116.9 11.4 83 344-427 11-104 (112)
180 3smz_A Protein raver-1, ribonu 99.4 2.2E-13 7.7E-18 134.7 10.6 85 345-430 181-269 (284)
181 3pgw_A U1-A; protein-RNA compl 99.4 3.2E-13 1.1E-17 133.4 11.4 82 345-427 6-92 (282)
182 2qfj_A FBP-interacting repress 99.4 2.7E-13 9.3E-18 127.7 9.6 80 348-428 28-111 (216)
183 2voo_A Lupus LA protein; RNA-b 99.4 3.2E-13 1.1E-17 129.4 10.1 75 348-424 109-186 (193)
184 3nmr_A Cugbp ELAV-like family 99.4 2.9E-13 9.8E-18 122.9 7.8 79 347-426 2-89 (175)
185 2diu_A KIAA0430 protein; struc 99.4 3.4E-13 1.2E-17 117.1 7.7 79 346-431 6-90 (96)
186 3sde_A Paraspeckle component 1 99.4 3.4E-13 1.2E-17 133.3 8.8 79 347-426 95-180 (261)
187 2cjk_A Nuclear polyadenylated 99.4 3.8E-13 1.3E-17 121.7 8.3 77 347-426 2-82 (167)
188 3pgw_A U1-A; protein-RNA compl 99.4 8.5E-13 2.9E-17 130.4 11.3 78 344-423 203-281 (282)
189 2j8a_A Histone-lysine N-methyl 99.4 9.3E-13 3.2E-17 120.7 7.6 74 349-422 3-93 (136)
190 3sde_A Paraspeckle component 1 99.3 2.4E-12 8E-17 127.3 10.7 78 345-425 19-96 (261)
191 2yh0_A Splicing factor U2AF 65 99.3 2.1E-12 7.3E-17 119.9 9.6 77 346-426 2-89 (198)
192 2g4b_A Splicing factor U2AF 65 99.3 2.7E-12 9.3E-17 116.7 9.5 76 347-426 3-89 (172)
193 1fje_B Nucleolin RBD12, protei 99.3 1.1E-12 3.8E-17 120.0 6.7 82 344-427 9-93 (175)
194 1qm9_A Polypyrimidine tract-bi 99.3 2.7E-12 9.3E-17 120.2 8.6 79 345-425 117-197 (198)
195 2adc_A Polypyrimidine tract-bi 99.3 4E-12 1.4E-16 123.1 9.1 79 345-425 148-228 (229)
196 3v4m_A Splicing factor U2AF 65 99.3 5.8E-12 2E-16 109.9 8.5 80 346-425 3-97 (105)
197 1jmt_A Splicing factor U2AF 35 99.3 1E-12 3.6E-17 114.3 3.6 69 353-422 20-103 (104)
198 3smz_A Protein raver-1, ribonu 99.3 8E-12 2.7E-16 123.5 10.3 80 346-426 93-176 (284)
199 2d9o_A DNAJ (HSP40) homolog, s 99.3 2.2E-11 7.4E-16 106.0 11.3 79 346-427 8-92 (100)
200 2ghp_A U4/U6 snRNA-associated 99.3 1E-11 3.5E-16 123.3 9.1 80 347-427 116-199 (292)
201 3tyt_A Heterogeneous nuclear r 99.3 6.3E-12 2.1E-16 121.2 7.3 77 345-422 120-204 (205)
202 3tht_A Alkylated DNA repair pr 99.2 1.6E-11 5.4E-16 128.4 10.8 79 343-423 13-97 (345)
203 3s6e_A RNA-binding protein 39; 99.2 1.4E-11 4.8E-16 109.5 8.9 80 346-425 5-93 (114)
204 3ue2_A Poly(U)-binding-splicin 99.2 1.2E-11 4.2E-16 110.5 7.3 79 346-424 18-108 (118)
205 2dnr_A Synaptojanin-1; RRM dom 99.0 1.5E-09 5.2E-14 93.5 9.0 78 343-425 2-86 (91)
206 1ufw_A Synaptojanin 2; RNP dom 98.7 2.4E-08 8E-13 86.6 7.0 75 342-422 9-92 (95)
207 1owx_A Lupus LA protein, SS-B, 98.6 9E-08 3.1E-12 86.4 8.8 77 345-424 15-95 (121)
208 3dxb_A Thioredoxin N-terminall 98.6 3.9E-08 1.3E-12 94.6 5.9 64 361-424 141-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 97.3 0.00087 3E-08 59.8 8.9 75 348-425 21-100 (117)
210 2dhx_A Poly (ADP-ribose) polym 97.1 0.0022 7.4E-08 56.4 9.6 75 346-426 6-85 (104)
211 1wwh_A Nucleoporin 35, nucleop 96.4 0.012 4.1E-07 52.9 8.7 75 347-426 23-98 (119)
212 1wey_A Calcipressin 1; structu 96.3 0.0064 2.2E-07 53.5 6.0 76 348-425 5-84 (104)
213 2d9n_A Cleavage and polyadenyl 96.1 0.0024 8.2E-08 52.8 2.7 25 190-214 8-32 (77)
214 2rhk_C Cleavage and polyadenyl 95.9 0.0017 5.8E-08 53.2 0.5 26 189-214 13-38 (72)
215 1i2t_A HYD protein; four alpha 95.8 0.0061 2.1E-07 48.8 3.5 51 8-61 7-57 (61)
216 2cqe_A KIAA1064 protein; CCCH 95.5 0.0052 1.8E-07 53.2 2.0 23 192-214 13-35 (98)
217 2d9m_A Zinc finger CCCH-type d 95.4 0.0041 1.4E-07 50.9 1.1 23 192-214 20-42 (69)
218 3p3d_A Nucleoporin 53; structu 95.4 0.017 5.9E-07 52.7 5.3 72 350-424 9-98 (132)
219 3d2q_A Muscleblind-like protei 95.2 0.0052 1.8E-07 49.9 1.2 23 192-214 6-29 (70)
220 1nmr_A Poly(A)-binding protein 94.8 0.012 4.2E-07 49.9 2.5 52 8-62 29-80 (85)
221 1ifw_A Polyadenylate-binding p 94.8 0.019 6.3E-07 49.5 3.5 52 8-62 26-79 (92)
222 3d2q_A Muscleblind-like protei 94.7 0.0086 2.9E-07 48.6 1.2 24 190-214 40-63 (70)
223 1m9o_A Tristetraproline; Cys3H 94.7 0.016 5.4E-07 47.1 2.8 26 189-214 9-35 (77)
224 2cqe_A KIAA1064 protein; CCCH 94.6 0.01 3.5E-07 51.3 1.5 23 192-214 36-59 (98)
225 3d2n_A Muscleblind-like protei 94.4 0.014 5E-07 49.1 1.9 23 192-214 9-32 (83)
226 1m9o_A Tristetraproline; Cys3H 94.3 0.0077 2.6E-07 49.0 0.0 24 191-214 49-73 (77)
227 2e5s_A Otthump00000018578; ZF- 93.9 0.014 4.9E-07 50.5 0.9 25 189-214 53-77 (98)
228 1g9l_A Polyadenylate-binding p 93.5 0.034 1.2E-06 51.5 2.7 52 9-63 73-124 (144)
229 2dyd_A Poly(A)-binding protein 93.4 0.024 8.4E-07 48.1 1.4 52 8-62 28-79 (85)
230 3pq1_A Poly(A) RNA polymerase; 93.3 0.032 1.1E-06 60.5 2.6 56 348-406 53-108 (464)
231 2kn4_A Immunoglobulin G-bindin 93.2 0.035 1.2E-06 49.9 2.2 34 514-548 112-145 (158)
232 2rpp_A Muscleblind-like protei 93.1 0.024 8.1E-07 48.5 1.0 23 192-214 17-40 (89)
233 2e5s_A Otthump00000018578; ZF- 93.1 0.011 3.8E-07 51.2 -1.1 24 191-214 19-43 (98)
234 3d2n_A Muscleblind-like protei 93.0 0.027 9.1E-07 47.5 1.1 24 190-214 41-64 (83)
235 3kuj_A Polyadenylate-binding p 92.7 0.054 1.8E-06 46.3 2.6 51 8-61 26-76 (88)
236 2d9n_A Cleavage and polyadenyl 92.1 0.037 1.3E-06 45.5 0.8 22 192-214 38-60 (77)
237 2rhk_C Cleavage and polyadenyl 91.6 0.043 1.5E-06 44.8 0.6 23 191-214 43-66 (72)
238 1uw4_A UPF3X; nonsense mediate 90.2 0.81 2.8E-05 39.0 7.4 66 349-415 2-73 (91)
239 2rpp_A Muscleblind-like protei 89.7 0.088 3E-06 44.9 0.9 23 191-214 50-72 (89)
240 2i2y_A Fusion protein consists 88.3 0.15 5.1E-06 45.5 1.5 42 385-427 11-53 (150)
241 1whv_A Poly(A)-specific ribonu 86.5 1.5 5.3E-05 38.1 6.7 54 348-407 16-69 (100)
242 3ctr_A Poly(A)-specific ribonu 85.2 0.88 3E-05 39.7 4.5 54 349-408 7-60 (101)
243 2fc6_A Nuclear, target of EGR1 73.8 1 3.5E-05 34.6 1.0 25 190-214 18-43 (50)
244 2l08_A Regulator of nonsense t 72.7 5.8 0.0002 34.3 5.6 66 348-414 9-80 (97)
245 3v33_A Ribonuclease ZC3H12A; r 58.8 2.3 7.9E-05 41.9 0.4 25 188-214 188-212 (223)
246 4f25_A Polyadenylate-binding p 55.3 3.4 0.00012 35.1 0.9 20 345-365 94-113 (115)
247 3d45_A Poly(A)-specific ribonu 53.0 33 0.0011 37.3 8.3 56 347-408 439-494 (507)
248 3u9g_A Zinc finger CCCH-type a 28.8 25 0.00086 34.7 2.3 23 191-214 174-196 (229)
249 3u9g_A Zinc finger CCCH-type a 27.3 20 0.00068 35.4 1.3 25 190-214 87-115 (229)
250 2g0c_A ATP-dependent RNA helic 26.3 71 0.0024 25.0 4.2 69 350-423 2-75 (76)
251 3ts2_A Protein LIN-28 homolog 26.1 13 0.00045 34.0 -0.2 28 364-395 2-29 (148)
252 3e50_C Protransforming growth 24.0 18 0.00063 27.4 0.3 22 192-214 5-26 (50)
253 2rnl_A Amphiregulin; AR, color 23.6 18 0.00063 27.3 0.2 22 192-214 9-30 (50)
254 3s93_A Tudor domain-containing 21.5 78 0.0027 27.2 3.8 64 244-318 9-73 (102)
255 3dve_B Voltage-dependent N-typ 20.2 17 0.00057 23.7 -0.5 14 21-34 1-14 (23)
No 1
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.91 E-value=4.6e-25 Score=220.14 Aligned_cols=93 Identities=18% Similarity=0.294 Sum_probs=73.3
Q ss_pred cCCCCCCCCCCCCCCCEEEEcCCCCCCC---------CHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHH
Q 008298 334 YSGEKSDPGGIVAGSRQIYLTFPAESTF---------TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQIL 404 (570)
Q Consensus 334 ~r~dr~d~g~~~~~~rtIfVg~L~~~~~---------TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al 404 (570)
.+.++.+.+......++||||+| +..+ +|++|+++|++||+|++|+|+. +||||||+|.+.++|++|+
T Consensus 120 ~~d~~~g~gs~~~~~rtLfVgnL-~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~ 196 (240)
T 3u1l_A 120 YREDMGGIGSFRKKNKTLYVGGI-DGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAK 196 (240)
T ss_dssp TC---------CCCCCEEEEECT-TGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHH
T ss_pred chhcccCcCccccCCceeecCCC-ChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHH
Confidence 33444445556677899999999 7776 7999999999999999999998 8999999999999999999
Q ss_pred HhCCCeEE------------cCeEEEEeeccccccch
Q 008298 405 AKGNPHFV------------CGARVLVKPYREKSRLV 429 (570)
Q Consensus 405 ~~mng~~i------------~GR~V~Vk~A~~K~k~~ 429 (570)
+.|++..| +|+.|.|+||.+++...
T Consensus 197 ~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 197 EAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp HHHTTCCCCCTTSTTGGGGGGSCCCEEEECC------
T ss_pred HHhCCCEEeccccccccccCCCCEEEEEEccCCCCHH
Confidence 99999999 99999999998876543
No 2
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=1.3e-17 Score=146.46 Aligned_cols=81 Identities=21% Similarity=0.474 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
...+|||+|| ++++||++|+++|++||+|++|+|+.| .+||||||+|.+.++|++|++.|+++.|+|+.|+|.++.+
T Consensus 4 ~~~~lfV~nL-p~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCC-CCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3568999999 999999999999999999999999987 5689999999999999999999999999999999999987
Q ss_pred cccc
Q 008298 425 KSRL 428 (570)
Q Consensus 425 K~k~ 428 (570)
+...
T Consensus 83 ~~~~ 86 (115)
T 4f25_A 83 RKER 86 (115)
T ss_dssp CCC-
T ss_pred cccc
Confidence 6543
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=142.72 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
...+|||+|| ++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|+.|+|.+|
T Consensus 18 ~gt~lfV~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYL-PQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4568999999 999999999999999999999999986 57999999999999999999999999999999999999
Q ss_pred cc
Q 008298 423 RE 424 (570)
Q Consensus 423 ~~ 424 (570)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=143.25 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
++.++|||++| ++++||++|+++|++||+|++|+|++| ++||||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 4 ~p~~~lfV~nL-~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARL-NDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 56789999999 999999999999999999999999986 6799999999999999999999999999999999999
Q ss_pred cccccc
Q 008298 422 YREKSR 427 (570)
Q Consensus 422 A~~K~k 427 (570)
+..+.+
T Consensus 83 a~~~~~ 88 (110)
T 3s8s_A 83 DIKGQQ 88 (110)
T ss_dssp CSTTHH
T ss_pred CCCCcH
Confidence 875543
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=141.34 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=73.5
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeecc----CCCceEEEEECCHHHHHHHHHhC-CCeEEcCeEEEEee
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVLVKP 421 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG-~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~m-ng~~i~GR~V~Vk~ 421 (570)
+++|||+|| ++++||++|+++|++|| +|++|+|++| ++||||||+|.+.++|++|++.+ ++..++|++|.|.+
T Consensus 1 S~~i~v~nL-p~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRML-PQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETC-CSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 479999999 99999999999999999 8999999986 68999999999999999999987 56789999999999
Q ss_pred ccccccc
Q 008298 422 YREKSRL 428 (570)
Q Consensus 422 A~~K~k~ 428 (570)
+.++.+.
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9887654
No 6
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=8.2e-17 Score=132.10 Aligned_cols=80 Identities=23% Similarity=0.389 Sum_probs=73.9
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 008298 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~ 418 (570)
+..+..++|||++| ++++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..++|+.|+
T Consensus 2 ~~~~~~~~l~V~nl-~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 80 (85)
T 3mdf_A 2 SMATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 80 (85)
T ss_dssp -CCCCSSEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34567899999999 899999999999999999999999875 5799999999999999999999999999999999
Q ss_pred Eeecc
Q 008298 419 VKPYR 423 (570)
Q Consensus 419 Vk~A~ 423 (570)
|.+++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99974
No 7
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=134.37 Aligned_cols=83 Identities=27% Similarity=0.472 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
....++|||++| ++.+|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNL-SYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456789999999 999999999999999999999999986 578999999999999999999999999999999999
Q ss_pred eccccccc
Q 008298 421 PYREKSRL 428 (570)
Q Consensus 421 ~A~~K~k~ 428 (570)
++.++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99887653
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=8.6e-17 Score=132.54 Aligned_cols=80 Identities=15% Similarity=0.306 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
+..++|||++| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..++|+.|+|.+
T Consensus 4 ~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDL-SPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45679999999 889999999999999999999999986 5789999999999999999999999999999999999
Q ss_pred ccccc
Q 008298 422 YREKS 426 (570)
Q Consensus 422 A~~K~ 426 (570)
+++++
T Consensus 83 a~~kp 87 (87)
T 3bs9_A 83 ATRKP 87 (87)
T ss_dssp EC---
T ss_pred cCCCC
Confidence 98763
No 9
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.68 E-value=1.2e-16 Score=130.66 Aligned_cols=78 Identities=12% Similarity=0.200 Sum_probs=73.3
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
+.+|||+|| ++++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..++|+.|+|.+++
T Consensus 1 t~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 358999999 999999999999999999999999975 569999999999999999999999999999999999998
Q ss_pred ccc
Q 008298 424 EKS 426 (570)
Q Consensus 424 ~K~ 426 (570)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 775
No 10
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3e-16 Score=133.86 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=76.8
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
.....++|||++| ++.+|+++|+++|++||+|++|+|+.+ .+||||||+|.+.++|++|++.|++..|+|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNL-SRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCC-CccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456789999999 899999999999999999999999986 5789999999999999999999999999999999999
Q ss_pred cccccc
Q 008298 422 YREKSR 427 (570)
Q Consensus 422 A~~K~k 427 (570)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987654
No 11
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=2.8e-17 Score=157.79 Aligned_cols=83 Identities=19% Similarity=0.441 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
..++|||++| ++.+|+++|+++|++||.|++|+|++| .+||||||+|.+.++|++|++.||+..|+|+.|.|.+|++
T Consensus 102 ~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCc-ccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 3579999999 999999999999999999999999986 5799999999999999999999999999999999999988
Q ss_pred cccchh
Q 008298 425 KSRLVD 430 (570)
Q Consensus 425 K~k~~~ 430 (570)
+.....
T Consensus 181 ~~~~~~ 186 (213)
T 4f02_A 181 RKEREA 186 (213)
T ss_dssp HHHHHH
T ss_pred Ccccch
Confidence 765443
No 12
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.7e-16 Score=133.33 Aligned_cols=84 Identities=21% Similarity=0.316 Sum_probs=77.6
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
.....++|||++| ++.+|+++|+++|++||+|++|+|+.+ .++|||||+|.+.++|++|++.|++..|+|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESC-CTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999 999999999999999999999999986 5699999999999999999999999999999999999
Q ss_pred ccccccc
Q 008298 422 YREKSRL 428 (570)
Q Consensus 422 A~~K~k~ 428 (570)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9887644
No 13
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-16 Score=130.78 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=74.4
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 008298 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~ 418 (570)
...+..++|||++| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|++|+
T Consensus 11 ~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 11 GLAPSKSTVYVSNL-PFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp SCCCCTTSEEEESC-CTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 44567889999999 899999999999999999999999985 5799999999999999999999999999999999
Q ss_pred Eeecc
Q 008298 419 VKPYR 423 (570)
Q Consensus 419 Vk~A~ 423 (570)
|.+|+
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
No 14
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=135.64 Aligned_cols=85 Identities=22% Similarity=0.365 Sum_probs=78.3
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 008298 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~ 418 (570)
......++|||++| ++.+|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 7 ~~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 7 GMATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp CSCCCCSCEEEESC-CSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CcCCCCCEEEEeCC-CCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 44567899999999 899999999999999999999999886 5799999999999999999999999999999999
Q ss_pred Eeeccccccc
Q 008298 419 VKPYREKSRL 428 (570)
Q Consensus 419 Vk~A~~K~k~ 428 (570)
|.++.++...
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2cqb_A 86 VNLAKPMRIK 95 (102)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999887644
No 15
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.67 E-value=2.7e-16 Score=132.72 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
++++|||++| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.|++..|+|+.|+|.++
T Consensus 1 P~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSI-PYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 3689999999 999999999999999999999999986 56999999999999999999999999999999999999
Q ss_pred cccccchhh
Q 008298 423 REKSRLVDR 431 (570)
Q Consensus 423 ~~K~k~~~r 431 (570)
.++......
T Consensus 80 ~~~~~~~~~ 88 (96)
T 2x1f_A 80 SNSDISGVS 88 (96)
T ss_dssp SCSSGGGHH
T ss_pred CCCCCCCcc
Confidence 988765443
No 16
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=135.33 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
.....++|||++| ++.+|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 11 RADDNATIRVTNL-SEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCSSSEEEEEESC-CTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3456789999999 899999999999999999999999986 57899999999999999999999999999999999
Q ss_pred eeccccccc
Q 008298 420 KPYREKSRL 428 (570)
Q Consensus 420 k~A~~K~k~ 428 (570)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999887643
No 17
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=134.24 Aligned_cols=84 Identities=27% Similarity=0.384 Sum_probs=76.9
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 008298 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~ 418 (570)
......++|||++| ++.+|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++ |+++.|+|+.|+
T Consensus 5 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 5 SSGSKSNKIFVGGI-PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCSSCCEEEEESC-CSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 34456789999999 999999999999999999999999985 579999999999999999999 899999999999
Q ss_pred Eeeccccccc
Q 008298 419 VKPYREKSRL 428 (570)
Q Consensus 419 Vk~A~~K~k~ 428 (570)
|.++.++...
T Consensus 83 V~~a~~~~~~ 92 (99)
T 2dgs_A 83 VKRAEPRDSK 92 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCccc
Confidence 9999887654
No 18
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.9e-16 Score=134.18 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=77.5
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
.....++|||++| ++.+|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 11 ERNQDATVYVGGL-DEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCTTTEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456789999999 999999999999999999999999986 57999999999999999999999999999999999
Q ss_pred eeccccccc
Q 008298 420 KPYREKSRL 428 (570)
Q Consensus 420 k~A~~K~k~ 428 (570)
.++.++.+.
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999887643
No 19
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=129.99 Aligned_cols=79 Identities=11% Similarity=0.264 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccC-----CCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQ-----KRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~-----sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.++ ++|||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 3 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRL-TRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4679999999 9999999999999999999999999863 899999999999999999999999999999999999
Q ss_pred ccccc
Q 008298 422 YREKS 426 (570)
Q Consensus 422 A~~K~ 426 (570)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87653
No 20
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.3e-16 Score=132.91 Aligned_cols=81 Identities=10% Similarity=0.150 Sum_probs=74.6
Q ss_pred CCCCEEEEcCCCCCCCCHHHHH----HHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 346 AGSRQIYLTFPAESTFTEQDVS----NYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr----~~FsqFG~V~~VrI~~D-~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
....+|||+|| ++.+++++|+ ++|++||+|++|+|+.| ..||||||+|.+.++|++|++.||+..|+|++|+|.
T Consensus 7 ~~~~~l~V~nL-~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNI-DYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44679999999 9999999999 99999999999999986 239999999999999999999999999999999999
Q ss_pred ecccccc
Q 008298 421 PYREKSR 427 (570)
Q Consensus 421 ~A~~K~k 427 (570)
+++++..
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9987653
No 21
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-16 Score=133.56 Aligned_cols=83 Identities=18% Similarity=0.327 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEE-Eeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDV-RIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~V-rI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
+..++|||++| ++.+|+++|+++|++||+|.+| +|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNL-DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECC-CTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45789999999 9999999999999999999999 99885 579999999999999999999999999999999999
Q ss_pred eccccccch
Q 008298 421 PYREKSRLV 429 (570)
Q Consensus 421 ~A~~K~k~~ 429 (570)
++.++....
T Consensus 82 ~a~~~~~~~ 90 (96)
T 1x5t_A 82 YAFKKDSKG 90 (96)
T ss_dssp ESCCCCCCC
T ss_pred EecccCCCC
Confidence 998876543
No 22
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=132.48 Aligned_cols=82 Identities=22% Similarity=0.345 Sum_probs=76.4
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
+..++|||++| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSL-HFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 46789999999 899999999999999999999999986 5799999999999999999999999999999999999
Q ss_pred ccccccc
Q 008298 422 YREKSRL 428 (570)
Q Consensus 422 A~~K~k~ 428 (570)
+.++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9887643
No 23
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5e-16 Score=133.74 Aligned_cols=84 Identities=15% Similarity=0.245 Sum_probs=77.3
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCC------CeEEc
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGN------PHFVC 413 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mn------g~~i~ 413 (570)
.....++|||++| ++.+|+++|+++|++||+|.+|+|+.| +++|||||+|.+.++|++|++.++ ++.|+
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNL-SFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3456789999999 999999999999999999999999986 579999999999999999999999 99999
Q ss_pred CeEEEEeeccccccc
Q 008298 414 GARVLVKPYREKSRL 428 (570)
Q Consensus 414 GR~V~Vk~A~~K~k~ 428 (570)
|+.|+|.++.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999887543
No 24
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.9e-16 Score=133.57 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
....++|||++| ++++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 19 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGNL-PPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 456789999999 899999999999999999999999886 679999999999999999999999999999999999998
Q ss_pred cccc
Q 008298 424 EKSR 427 (570)
Q Consensus 424 ~K~k 427 (570)
++.+
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7654
No 25
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.66 E-value=2.9e-16 Score=134.78 Aligned_cols=76 Identities=9% Similarity=0.115 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
...+..|||||| ++.+||++|+++|.+||+|.+++++. +||||||+|.++++|++|++.||+..++||.|+|+.|.
T Consensus 4 ~~~~~wL~VgNL-~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 4 AWGSSWLLLKNL-TAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCCEEEEECC-CTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCccceEEEeCC-CccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356779999999 99999999999999999999999988 99999999999999999999999999999999999994
No 26
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.1e-16 Score=133.11 Aligned_cols=82 Identities=11% Similarity=0.171 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
....++|||++| ++.+|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.|++..|+|+.|+|.+
T Consensus 14 ~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGL-PFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 355789999999 999999999999999999999999985 5689999999999999999999999999999999999
Q ss_pred cccccc
Q 008298 422 YREKSR 427 (570)
Q Consensus 422 A~~K~k 427 (570)
+.++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 988754
No 27
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=139.60 Aligned_cols=82 Identities=16% Similarity=0.121 Sum_probs=74.4
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEEEEeec
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVKPY 422 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mn--g~~i~GR~V~Vk~A 422 (570)
.+..++|||+|| ++++||++|+++|++||+|++|+|+. .||||||+|.+.++|++|++.++ +..|+|+.|+|.++
T Consensus 13 ~~~~~~LfV~nL-p~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSC-CTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 456789999999 99999999999999999999999998 58999999999999999999765 58999999999999
Q ss_pred cccccch
Q 008298 423 REKSRLV 429 (570)
Q Consensus 423 ~~K~k~~ 429 (570)
+++....
T Consensus 90 ~~~~~~~ 96 (105)
T 1sjq_A 90 NHKELKT 96 (105)
T ss_dssp SSSSCCC
T ss_pred CCCCCCc
Confidence 8775443
No 28
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.1e-16 Score=129.92 Aligned_cols=80 Identities=26% Similarity=0.287 Sum_probs=74.3
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
..+..++|||++| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|++|+|
T Consensus 11 ~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 11 NPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp SCCGGGCEEEESC-CSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999 889999999999999999999999985 56899999999999999999999999999999999
Q ss_pred eeccc
Q 008298 420 KPYRE 424 (570)
Q Consensus 420 k~A~~ 424 (570)
.+++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 29
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=134.99 Aligned_cols=83 Identities=24% Similarity=0.248 Sum_probs=76.5
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
....++|||++| ++.+|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 10 ~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 10 VDGMITLKVDNL-TYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 355789999999 999999999999999999999999985 579999999999999999999999999999999999
Q ss_pred eccccccc
Q 008298 421 PYREKSRL 428 (570)
Q Consensus 421 ~A~~K~k~ 428 (570)
+++++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99876543
No 30
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=5.6e-16 Score=134.71 Aligned_cols=85 Identities=15% Similarity=0.283 Sum_probs=77.7
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
.....++|||++| ++.+|+++|+++|++||.|++|+|+.+ +++|||||+|.+.++|++|++.|+++.|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 11 DTSNHFHVFVGDL-SPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CSTTCEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999 999999999999999999999999986 56899999999999999999999999999999999
Q ss_pred eeccccccch
Q 008298 420 KPYREKSRLV 429 (570)
Q Consensus 420 k~A~~K~k~~ 429 (570)
.++.++....
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9998876543
No 31
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=133.56 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=75.9
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
..+..++|||++| ++.+|+++|+++|++||.|. ++|+.++++|||||+|.+.++|++|++.||+..|+|++|+|.+++
T Consensus 15 ~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 15 GAPLAADVYVGNL-PRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SSCCCCEEEEECC-CTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeCC-CCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3455789999999 99999999999999999997 788888899999999999999999999999999999999999998
Q ss_pred cccc
Q 008298 424 EKSR 427 (570)
Q Consensus 424 ~K~k 427 (570)
++.+
T Consensus 93 ~~~~ 96 (97)
T 2e5j_A 93 QQRD 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 32
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=3.3e-16 Score=138.60 Aligned_cols=83 Identities=13% Similarity=0.041 Sum_probs=74.3
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG-~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...+...+|||+|| ++++|+++|+++|++|| +|..|+|+.+++||||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 23 ~~p~~~~~l~VgnL-p~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 23 KLPAKRYRITMKNL-PEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp --CCCCEEEEEECS-SCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 33455679999999 99999999999999999 99999998777999999999999999999999999999999999999
Q ss_pred ccccc
Q 008298 422 YREKS 426 (570)
Q Consensus 422 A~~K~ 426 (570)
+...+
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 87553
No 33
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-16 Score=134.39 Aligned_cols=84 Identities=25% Similarity=0.375 Sum_probs=77.8
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 008298 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~ 418 (570)
...+..++|||++| ++++|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 7 ~~~~~~~~l~v~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 7 GMASDEGKLFVGGL-SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCSEEEEESC-CTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 44567899999999 999999999999999999999999986 5799999999999999999999999999999999
Q ss_pred Eeecccccc
Q 008298 419 VKPYREKSR 427 (570)
Q Consensus 419 Vk~A~~K~k 427 (570)
|.+++++..
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 999987764
No 34
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.4e-16 Score=131.47 Aligned_cols=81 Identities=23% Similarity=0.367 Sum_probs=75.1
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-------~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~ 418 (570)
+..++|||++| ++++|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.|++..|+|+.|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNL-NFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45789999999 999999999999999999999999974 4589999999999999999999999999999999
Q ss_pred Eeecccccc
Q 008298 419 VKPYREKSR 427 (570)
Q Consensus 419 Vk~A~~K~k 427 (570)
|.++.++..
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999987654
No 35
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3e-16 Score=136.45 Aligned_cols=83 Identities=22% Similarity=0.325 Sum_probs=76.7
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
......++|||++| ++.+|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.|++..|+|+.|+|.
T Consensus 24 ~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 24 ENKSQPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp SCTTCCCEEEEESC-CTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCCEEEEECC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456789999999 999999999999999999999999986 579999999999999999999999999999999999
Q ss_pred eccccc
Q 008298 421 PYREKS 426 (570)
Q Consensus 421 ~A~~K~ 426 (570)
+++++.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998763
No 36
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.3e-16 Score=126.66 Aligned_cols=76 Identities=25% Similarity=0.341 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhC-CCeEEcCeEEEEeecc
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVLVKPYR 423 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~m-ng~~i~GR~V~Vk~A~ 423 (570)
.+..++|||++| ++.+|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.| ++..++|++|+|.+++
T Consensus 9 ~~~~~~l~V~~l-~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGL-GDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECC-TTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCC-CCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 356789999999 88999999999999999999999998 7999999999999999999999 9999999999999974
No 37
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=136.88 Aligned_cols=77 Identities=19% Similarity=0.189 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCC--eeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCe----EEcCeE
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGP--VQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPH----FVCGAR 416 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~--V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~----~i~GR~ 416 (570)
.-+||||+|| ++++|+++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++.||+. .|+||+
T Consensus 8 ~m~tlfV~nL-~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 8 HMDTIILRNI-APHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCEEEEESC-CTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred ccCEEEEeCC-CCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 4579999999 999999999999999995 679999986 68999999999999999999999875 699999
Q ss_pred EEEeeccc
Q 008298 417 VLVKPYRE 424 (570)
Q Consensus 417 V~Vk~A~~ 424 (570)
|.|.+|+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 38
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=4.5e-16 Score=133.02 Aligned_cols=84 Identities=14% Similarity=0.200 Sum_probs=77.1
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcC---eEE
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCG---ARV 417 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~G---R~V 417 (570)
..+..++|||++| ++.+|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||+..+.| +.|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGML-NKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 3456889999999 999999999999999999999999986 568999999999999999999999999998 999
Q ss_pred EEeeccccccc
Q 008298 418 LVKPYREKSRL 428 (570)
Q Consensus 418 ~Vk~A~~K~k~ 428 (570)
.|.++.++...
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999887653
No 39
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.64 E-value=6.7e-17 Score=138.53 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCCC------CCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcC-e
Q 008298 347 GSRQIYLTFPAES------TFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCG-A 415 (570)
Q Consensus 347 ~~rtIfVg~L~~~------~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~G-R 415 (570)
..++|||+|| ++ .+++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+| +
T Consensus 5 ~~~~vfV~nL-p~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGA-PVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESC-CCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCC-CcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3579999999 88 9999999999999999999999986 579999999999999999999999999999 9
Q ss_pred EEEEeecccccc
Q 008298 416 RVLVKPYREKSR 427 (570)
Q Consensus 416 ~V~Vk~A~~K~k 427 (570)
.|+|.++.++.+
T Consensus 84 ~l~V~~a~~~~~ 95 (100)
T 3ns6_A 84 RLFLYTMKDVER 95 (100)
T ss_dssp BCEEEESHHHHH
T ss_pred EEEEEECchhhh
Confidence 999999987654
No 40
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=3.8e-16 Score=136.04 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=77.1
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
..+..++|||++| ++++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 21 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 21 EGPEGANLFIYHL-PQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCSTTCCEEEESC-CSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456789999999 999999999999999999999999985 56899999999999999999999999999999999
Q ss_pred eeccccccc
Q 008298 420 KPYREKSRL 428 (570)
Q Consensus 420 k~A~~K~k~ 428 (570)
.+++++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999887643
No 41
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.2e-16 Score=137.23 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
...++||||+| ++++|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++ ++++.|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~L-p~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECC-CTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 34689999999 999999999999999999999999986 689999999999999999999 7999999999999987
Q ss_pred cc
Q 008298 423 RE 424 (570)
Q Consensus 423 ~~ 424 (570)
.+
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 42
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.64 E-value=6e-16 Score=133.49 Aligned_cols=81 Identities=11% Similarity=0.181 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...++|||++| ++.+|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.|++..|+|+.|.|.+
T Consensus 24 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45689999999 899999999999999999999999875 5799999999999999999999999999999999999
Q ss_pred cccccc
Q 008298 422 YREKSR 427 (570)
Q Consensus 422 A~~K~k 427 (570)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987653
No 43
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.8e-16 Score=133.26 Aligned_cols=83 Identities=18% Similarity=0.317 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
....++|||++| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNL-DDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 346789999999 999999999999999999999999976 78999999999999999999999999999999999999
Q ss_pred cccccc
Q 008298 423 REKSRL 428 (570)
Q Consensus 423 ~~K~k~ 428 (570)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 887653
No 44
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.4e-16 Score=133.95 Aligned_cols=80 Identities=13% Similarity=0.221 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 21 ~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45689999999 999999999999999999999999986 5689999999999999999999999999999999999
Q ss_pred ccccc
Q 008298 422 YREKS 426 (570)
Q Consensus 422 A~~K~ 426 (570)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98765
No 45
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=4e-16 Score=132.68 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecccc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K 425 (570)
+..++|||++| ++.+|+++|+++|++||.|.+|+|+. +||||||+|.+.++|.+|++.||+..|+|+.|+|.+++++
T Consensus 25 ~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNI-PHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESC-CTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCC-CcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 45689999999 89999999999999999999999996 8999999999999999999999999999999999999764
No 46
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=4.5e-16 Score=130.93 Aligned_cols=85 Identities=15% Similarity=0.271 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCCCCCCHHHHH----HHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 346 AGSRQIYLTFPAESTFTEQDVS----NYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr----~~FsqFG~V~~VrI~~D-~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
++.++|||+|| ++.+++++|+ ++|++||+|.+|+|+.. +++|||||+|.+.++|++|++.|++..|+|+.|+|.
T Consensus 6 ~~~~~l~V~nL-p~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 6 RPNHTIYINNL-NEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCCSEEEEESC-CTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 56789999999 9999999999 99999999999999853 689999999999999999999999999999999999
Q ss_pred eccccccchhh
Q 008298 421 PYREKSRLVDR 431 (570)
Q Consensus 421 ~A~~K~k~~~r 431 (570)
++.++.+...+
T Consensus 85 ~a~~~~~~~~k 95 (97)
T 1nu4_A 85 YAKTDSDIIAK 95 (97)
T ss_dssp ECSSCCTHHHH
T ss_pred EccCCCccccc
Confidence 99988765443
No 47
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7.9e-16 Score=131.65 Aligned_cols=84 Identities=20% Similarity=0.379 Sum_probs=76.9
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhC-CCeEEcCeEE
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKG-NPHFVCGARV 417 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-----~sRGFGFVtF~~~e~A~~Al~~m-ng~~i~GR~V 417 (570)
.....++|||++| ++.+|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.| |+..|+|+.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNI-PFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred cCCCCCEEEEeCC-CCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 3456789999999 999999999999999999999999875 46999999999999999999999 9999999999
Q ss_pred EEeeccccccc
Q 008298 418 LVKPYREKSRL 428 (570)
Q Consensus 418 ~Vk~A~~K~k~ 428 (570)
+|.++.++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999887643
No 48
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=8e-17 Score=134.92 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=67.9
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCC--CeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFG--PVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG--~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
.+|||+|| ++++|+++|+++|++|| .|.+|+|+.| ++||||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 2 ~~l~V~nL-~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESC-CTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCC-CCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 47999999 99999999999999999 9999999986 67999999999999999999999999999999999999
Q ss_pred ccccc
Q 008298 423 REKSR 427 (570)
Q Consensus 423 ~~K~k 427 (570)
.++..
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87654
No 49
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.63 E-value=4.1e-16 Score=129.96 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
.+..++|||++| ++.+|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.|++..|+|+.|+|.++
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNL-PFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSC-CTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356789999999 899999999999999999999999975 67999999999999999999999999999999999999
Q ss_pred ccccc
Q 008298 423 REKSR 427 (570)
Q Consensus 423 ~~K~k 427 (570)
+++..
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87653
No 50
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.63 E-value=5.7e-16 Score=129.85 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
....++|||++| ++.+++++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|+|.+
T Consensus 13 ~~~~~~l~v~nl-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNL-EARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 345789999999 899999999999999999999999986 5689999999999999999999999999999999999
Q ss_pred ccc
Q 008298 422 YRE 424 (570)
Q Consensus 422 A~~ 424 (570)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 51
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=132.38 Aligned_cols=83 Identities=17% Similarity=0.094 Sum_probs=75.9
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
.....++|||++| ++.+|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANL-DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 3456789999999 899999999999999999999999986 568999999999999999999999999999999999
Q ss_pred ecccccc
Q 008298 421 PYREKSR 427 (570)
Q Consensus 421 ~A~~K~k 427 (570)
++.....
T Consensus 90 ~a~~~~~ 96 (114)
T 2do0_A 90 MDERALP 96 (114)
T ss_dssp ECSCCCC
T ss_pred EcccCCC
Confidence 9876543
No 52
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.1e-15 Score=130.54 Aligned_cols=79 Identities=18% Similarity=0.082 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC-----eEEEEe
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG-----ARVLVK 420 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~G-----R~V~Vk 420 (570)
....+|||++| ++++|+++|+++|++||+|++|+|+.+ |||||+|.+.++|++|++.||+..|+| +.|+|.
T Consensus 13 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 34679999999 899999999999999999999999985 999999999999999999999999999 999999
Q ss_pred eccccccc
Q 008298 421 PYREKSRL 428 (570)
Q Consensus 421 ~A~~K~k~ 428 (570)
++.++...
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99987644
No 53
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.63 E-value=8.4e-16 Score=127.10 Aligned_cols=76 Identities=25% Similarity=0.429 Sum_probs=71.6
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
.++|||++| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|+ .+++..|+|+.|+|.+++
T Consensus 6 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNV-DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESC-CTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 479999999 999999999999999999999999985 57999999999999999999 899999999999999987
Q ss_pred cc
Q 008298 424 EK 425 (570)
Q Consensus 424 ~K 425 (570)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 54
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.63 E-value=7.5e-16 Score=134.68 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=73.5
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCe--EEcCeEEEEe
Q 008298 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPH--FVCGARVLVK 420 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~--~i~GR~V~Vk 420 (570)
...+++++|||+|| ++++||++|+++|++||+|.+|+|++ .||||||+|.+.++|.+|++.+++. .|+|++|.|.
T Consensus 16 ~~~~ps~~l~V~NL-p~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 16 HKTPASPVVHIRGL-IDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp -CCCCCSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred ccCCCCcEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 44577899999999 89999999999999999999999997 8999999999999999999998765 5899999999
Q ss_pred eccccc
Q 008298 421 PYREKS 426 (570)
Q Consensus 421 ~A~~K~ 426 (570)
+++.+.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998653
No 55
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=6e-16 Score=132.45 Aligned_cols=83 Identities=16% Similarity=0.261 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEE---cCeE
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV---CGAR 416 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i---~GR~ 416 (570)
.....++|||++| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|++..+ .|+.
T Consensus 9 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 9 KDHDAIKLFIGQI-PRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCTTCEEEEEESC-CTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456789999999 999999999999999999999999985 5799999999999999999999999888 8999
Q ss_pred EEEeecccccc
Q 008298 417 VLVKPYREKSR 427 (570)
Q Consensus 417 V~Vk~A~~K~k 427 (570)
|+|.++.++..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987654
No 56
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4e-16 Score=135.88 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCCCHHHHH---HHhhcCCCeeEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCeEEcCe
Q 008298 346 AGSRQIYLTFPAESTFTEQDVS---NYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr---~~FsqFG~V~~VrI~~D-------~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR 415 (570)
...++|||++| ++++++++|+ ++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+
T Consensus 13 ~~~~~l~V~nL-p~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGL-SQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEE-CTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECC-CCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 44679999999 9999999999 99999999999999975 3569999999999999999999999999999
Q ss_pred EEEEeeccccc
Q 008298 416 RVLVKPYREKS 426 (570)
Q Consensus 416 ~V~Vk~A~~K~ 426 (570)
.|+|.+|.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998876
No 57
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8.3e-16 Score=128.31 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
.+..++|||++| ++++|+++|+++|++||+|++|+|+ ||||||+|.+.++|++|++.|++..|+|++|+|.++++
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNL-PREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESC-CSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 456789999999 9999999999999999999999996 79999999999999999999999999999999999988
Q ss_pred cccc
Q 008298 425 KSRL 428 (570)
Q Consensus 425 K~k~ 428 (570)
+.+.
T Consensus 80 ~~~~ 83 (90)
T 2dnq_A 80 KSKA 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 58
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=135.46 Aligned_cols=84 Identities=24% Similarity=0.406 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
.....++|||++| ++++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 38 ~~~~~~~l~V~nL-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYI-PTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESC-STTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456789999999 999999999999999999999999986 46999999999999999999999999999999999
Q ss_pred eeccccccc
Q 008298 420 KPYREKSRL 428 (570)
Q Consensus 420 k~A~~K~k~ 428 (570)
.+++++...
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999887654
No 59
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=5.7e-16 Score=140.05 Aligned_cols=86 Identities=10% Similarity=0.127 Sum_probs=77.4
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHH----HHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVS----NYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr----~~FsqFG~V~~VrI~~D-~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
.++.++|||+|| ++.+++++|+ ++|++||+|.+|.|... ++||||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 26 ~~p~~~LfV~nL-~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 26 TEPSQVVLITNI-NPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CSCCSEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 355789999999 8999999876 69999999999999764 78999999999999999999999999999999999
Q ss_pred eeccccccchhh
Q 008298 420 KPYREKSRLVDR 431 (570)
Q Consensus 420 k~A~~K~k~~~r 431 (570)
.+++.+.....+
T Consensus 105 ~~a~~~~~~~~~ 116 (127)
T 2a3j_A 105 TFSETPQSQVAE 116 (127)
T ss_dssp EECCCCCHHHHC
T ss_pred EEccCcchhccc
Confidence 999988765543
No 60
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8.3e-16 Score=131.57 Aligned_cols=82 Identities=28% Similarity=0.427 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
....++|||++| ++.+|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++. +++.|+|+.|.|.
T Consensus 13 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 13 ADEIGKLFVGGL-DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp SSSSSEECCBSC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 456789999999 999999999999999999999999986 5689999999999999999999 9999999999999
Q ss_pred eccccccc
Q 008298 421 PYREKSRL 428 (570)
Q Consensus 421 ~A~~K~k~ 428 (570)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99887654
No 61
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.3e-16 Score=130.35 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCee-EEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeE---
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQ-DVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGAR--- 416 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~-~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~--- 416 (570)
....++|||++| ++.+|+++|+++|++||+|. +|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.
T Consensus 6 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDL-EPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSC-CTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 456789999999 89999999999999999999 9999986 57899999999999999999999999999999
Q ss_pred -EEEeeccccc
Q 008298 417 -VLVKPYREKS 426 (570)
Q Consensus 417 -V~Vk~A~~K~ 426 (570)
|+|.++.+..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987654
No 62
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=1.4e-15 Score=125.71 Aligned_cols=76 Identities=26% Similarity=0.433 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
....++|||++| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++. +++.|+|+.|.|+
T Consensus 8 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 8 EEDAGKMFVGGL-SWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPK 85 (87)
T ss_dssp CSCTTEEEEECC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEE
Confidence 356789999999 899999999999999999999999986 5699999999999999999976 8899999999999
Q ss_pred ec
Q 008298 421 PY 422 (570)
Q Consensus 421 ~A 422 (570)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 63
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=132.83 Aligned_cols=82 Identities=15% Similarity=0.083 Sum_probs=74.2
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhC--CCeEEcCeEEEEee
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG--NPHFVCGARVLVKP 421 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~m--ng~~i~GR~V~Vk~ 421 (570)
..+++++|||+|| ++.+||++|+++|++||.|.+|+|+. .||||||+|.+.++|.+|++.+ ++..|+|+.|.|.+
T Consensus 11 ~~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 11 DGAPSRVLHIRKL-PGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CSSCCSEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 3466789999999 89999999999999999999999998 5999999999999999999976 57889999999999
Q ss_pred ccccccc
Q 008298 422 YREKSRL 428 (570)
Q Consensus 422 A~~K~k~ 428 (570)
++.+...
T Consensus 88 a~~~~~~ 94 (101)
T 2cq1_A 88 SNHKELK 94 (101)
T ss_dssp CSCSSCC
T ss_pred cCcccCc
Confidence 9876543
No 64
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.5e-16 Score=135.46 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCC--eEEcCeEEEEee
Q 008298 345 VAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP--HFVCGARVLVKP 421 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~-~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng--~~i~GR~V~Vk~ 421 (570)
..+.++|||+|| ++ ++||++|+++|++||+|.+|+|++ .||||||+|++.++|.+|++.|++ ..|+|++|.|.+
T Consensus 12 ~~p~~~l~V~nL-p~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDF-QRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESC-CCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCC-CCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 346789999999 88 999999999999999999999998 679999999999999999998764 569999999999
Q ss_pred cccccc
Q 008298 422 YREKSR 427 (570)
Q Consensus 422 A~~K~k 427 (570)
++.+..
T Consensus 89 a~~~~~ 94 (102)
T 1x4d_A 89 SQKYKR 94 (102)
T ss_dssp ECCCTT
T ss_pred CCCCCC
Confidence 986543
No 65
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.62 E-value=1.5e-15 Score=132.27 Aligned_cols=82 Identities=22% Similarity=0.339 Sum_probs=72.2
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
.....++|||++| ++++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.+ ++.|+|+.|.|
T Consensus 21 ~~~~~~~lfV~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp -----CCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 3456789999999 999999999999999999999999985 57999999999999999999996 59999999999
Q ss_pred eecccccc
Q 008298 420 KPYREKSR 427 (570)
Q Consensus 420 k~A~~K~k 427 (570)
.++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987754
No 66
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=129.51 Aligned_cols=80 Identities=10% Similarity=0.158 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEc--CeEEEEeec
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC--GARVLVKPY 422 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~--GR~V~Vk~A 422 (570)
.+..++|||++| ++.+|+++|+++|++||+|++|+|+. .||||||+|.+.++|++|++.||+..|+ |+.|+|.++
T Consensus 14 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 14 ANPTTRLWVGGL-GPNTSLAALAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCSCEEEECC-CSSCCHHHHHHHHHTTSCEEEEEECS--SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeC--CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 355789999999 88999999999999999999999988 5999999999999999999999999999 999999999
Q ss_pred ccccc
Q 008298 423 REKSR 427 (570)
Q Consensus 423 ~~K~k 427 (570)
+++..
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88753
No 67
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.5e-15 Score=131.04 Aligned_cols=81 Identities=19% Similarity=0.303 Sum_probs=74.7
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
....++|||++| ++.+|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.+++ .|+|+.|+|.
T Consensus 14 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 14 DTTFTKIFVGGL-PYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp SCSSSEEEEECC-CSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 456789999999 999999999999999999999999986 5799999999999999999999998 8999999999
Q ss_pred ecccccc
Q 008298 421 PYREKSR 427 (570)
Q Consensus 421 ~A~~K~k 427 (570)
++.++.+
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9976543
No 68
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=1.7e-15 Score=129.34 Aligned_cols=79 Identities=15% Similarity=0.352 Sum_probs=72.5
Q ss_pred CCCCCCCEEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 343 GIVAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~-~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...+..++|||+|| ++ ++++++|+++|++||.|.+|+| +||||||+|.+.++|++|++.||+..++|++|+|.+
T Consensus 17 ~~~~~~~~l~V~nL-p~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 17 RGSHMKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp --CCTTCEEEEESC-CSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567899999999 87 9999999999999999999999 589999999999999999999999999999999999
Q ss_pred ccccc
Q 008298 422 YREKS 426 (570)
Q Consensus 422 A~~K~ 426 (570)
++.+.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 69
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.2e-16 Score=132.13 Aligned_cols=84 Identities=19% Similarity=0.277 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
..++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.|++..|+|+.|+|.++
T Consensus 7 ~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNI-PYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESC-CTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCC-CCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4579999999 899999999999999999999999975 46899999999999999999999999999999999999
Q ss_pred cccccchhh
Q 008298 423 REKSRLVDR 431 (570)
Q Consensus 423 ~~K~k~~~r 431 (570)
.++......
T Consensus 86 ~~~~~~~~~ 94 (104)
T 1p1t_A 86 ASEKNKEEL 94 (104)
T ss_dssp TCTTHHHHH
T ss_pred CCccchhhh
Confidence 887665443
No 70
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=131.52 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=75.0
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecccc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K 425 (570)
+..++|||++| ++.+|+++|+++|++||+|.+|+|+. .||||||+|.+.++|.+|++.|++..|+|+.|+|.+++++
T Consensus 23 ~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGI-ASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECC-SSCCCHHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 45689999999 89999999999999999999999998 4999999999999999999999999999999999999887
Q ss_pred ccc
Q 008298 426 SRL 428 (570)
Q Consensus 426 ~k~ 428 (570)
...
T Consensus 100 ~~~ 102 (109)
T 1x4g_A 100 PDM 102 (109)
T ss_dssp CSS
T ss_pred CCC
Confidence 643
No 71
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.62 E-value=7.9e-16 Score=135.58 Aligned_cols=83 Identities=19% Similarity=0.266 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
...++|||++| ++++|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 5 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGL-NRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECC-TTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34689999999 999999999999999999999999986 57899999999999999999999999999999999999
Q ss_pred cccccch
Q 008298 423 REKSRLV 429 (570)
Q Consensus 423 ~~K~k~~ 429 (570)
+++....
T Consensus 84 ~~~~~~~ 90 (116)
T 2fy1_A 84 KKPSFQS 90 (116)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 8776443
No 72
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=1.8e-15 Score=129.52 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
....++|||++| ++++|+++|+++|++||+|++|+|+ ||||||+|.+.++|++|++.|+++.|+|+.|.|.++++
T Consensus 8 ~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 8 MAKVKVLFVRNL-ANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCCEEEECC-CTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 355789999999 8899999999999999999999995 67999999999999999999999999999999999988
Q ss_pred cccch
Q 008298 425 KSRLV 429 (570)
Q Consensus 425 K~k~~ 429 (570)
+....
T Consensus 83 ~~~~~ 87 (103)
T 2dgu_A 83 PDQKR 87 (103)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 76544
No 73
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7e-16 Score=138.62 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=75.1
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEEEEe
Q 008298 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVK 420 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mn--g~~i~GR~V~Vk 420 (570)
...++.++|||+|| ++++||++|+++|++||.|++|+|+. .||||||+|++.++|.+|++.++ +..|+|+.|+|.
T Consensus 26 ~~~~ps~~LfVgNL-p~~vte~dL~~lF~~fG~V~~v~i~~--~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 26 SAGVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCSSCCSEEEEESC-CTTCCHHHHHHHHTTTSCCCEEEEEG--GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred ccCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 34567899999999 99999999999999999999999998 58999999999999999999876 468999999999
Q ss_pred eccccccc
Q 008298 421 PYREKSRL 428 (570)
Q Consensus 421 ~A~~K~k~ 428 (570)
+++++...
T Consensus 103 ~a~~k~~~ 110 (119)
T 2ad9_A 103 FSNHKELK 110 (119)
T ss_dssp ECSSSSCC
T ss_pred EccCCCCC
Confidence 99876543
No 74
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.7e-15 Score=125.65 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=73.1
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
....++|||++| ++.+|+++|+++|++||+|++|+|+ ++||||+|.+.++|++|++.||++.|+|+.|+|.++++
T Consensus 7 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNI-SPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESC-CSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 456789999999 9999999999999999999999996 56999999999999999999999999999999999988
Q ss_pred cccc
Q 008298 425 KSRL 428 (570)
Q Consensus 425 K~k~ 428 (570)
+...
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7543
No 75
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-15 Score=133.65 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=73.0
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 008298 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~ 418 (570)
...+..++|||++| +..+|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.|++..|+|+.|+
T Consensus 58 ~~~~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeC-CCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44566889999999 899999999999999999999999886 6799999999999999999999999999999999
Q ss_pred Eeec
Q 008298 419 VKPY 422 (570)
Q Consensus 419 Vk~A 422 (570)
|.+|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9875
No 76
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=2.1e-15 Score=128.85 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
....++|||++| ++.+|+++|+++|++|| |.+|+|+.+ +++|||||+|.+.++|++|+ .||+..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGNL-PFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEESC-CTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345789999999 99999999999999997 999999986 46999999999999999999 899999999999999
Q ss_pred ecccccc
Q 008298 421 PYREKSR 427 (570)
Q Consensus 421 ~A~~K~k 427 (570)
++.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987654
No 77
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.5e-15 Score=132.60 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
.+..++|||++| ++++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|+|.
T Consensus 37 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHL-PQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECS-CTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 456789999999 899999999999999999999999975 579999999999999999999999999999999999
Q ss_pred ecc
Q 008298 421 PYR 423 (570)
Q Consensus 421 ~A~ 423 (570)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 78
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=129.76 Aligned_cols=81 Identities=15% Similarity=0.230 Sum_probs=75.5
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
..+..++|||++| ++.+|+++|+++|++||+|++|+|+. .||||||+|.+.++|++|++.|+++.|+|++|+|.+++
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 11 TFTQRSRLFVGNL-PPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCCCTTEEEEESC-CTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 3456789999999 89999999999999999999999997 79999999999999999999999999999999999998
Q ss_pred cccc
Q 008298 424 EKSR 427 (570)
Q Consensus 424 ~K~k 427 (570)
++..
T Consensus 88 ~~~~ 91 (99)
T 2cpj_A 88 HSAS 91 (99)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 79
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.1e-15 Score=135.66 Aligned_cols=80 Identities=11% Similarity=0.190 Sum_probs=74.0
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
.....++|||++| ++.+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.|++..++|+.|+|
T Consensus 83 ~~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 83 SSDDTFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCTTCEEEEEESC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCceEEECCC-CCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 3456789999999 899999999999999999999999875 57999999999999999999999999999999999
Q ss_pred eeccc
Q 008298 420 KPYRE 424 (570)
Q Consensus 420 k~A~~ 424 (570)
.+|++
T Consensus 162 ~~a~~ 166 (166)
T 3md3_A 162 NWAAK 166 (166)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 99863
No 80
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=130.93 Aligned_cols=81 Identities=11% Similarity=0.139 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCCCCC------CHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCe-E
Q 008298 346 AGSRQIYLTFPAESTF------TEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGA-R 416 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~------TEedLr~~FsqFG~V~~VrI~~D--~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR-~ 416 (570)
...++|||+|| ++.+ |+++|+++|++||+|.+|+|+.. ++||||||+|.+.++|++|+..||+..|+|+ .
T Consensus 13 ~~~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESC-CCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCC-CcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 34689999999 7788 78999999999999999999853 7899999999999999999999999999999 9
Q ss_pred EEEeecccccc
Q 008298 417 VLVKPYREKSR 427 (570)
Q Consensus 417 V~Vk~A~~K~k 427 (570)
|+|.++.+..+
T Consensus 92 l~V~~a~~~~k 102 (105)
T 2nlw_A 92 FRVNLFTDFDK 102 (105)
T ss_dssp EEEECSCCCCC
T ss_pred EEEEEcchHhh
Confidence 99999986654
No 81
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=141.90 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCC--CeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFG--PVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG--~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
..++|||||| ++++|+++|+++|++|| .|.+|+|+.| ++||||||+|.+.++|++|++.||+..|+|+.|.|.
T Consensus 54 ~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSF-SWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECC-CTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4579999999 99999999999999999 9999999986 679999999999999999999999999999999999
Q ss_pred eccccc
Q 008298 421 PYREKS 426 (570)
Q Consensus 421 ~A~~K~ 426 (570)
++.++.
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 998764
No 82
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=1.4e-15 Score=128.27 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=64.5
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
..+...+||||+| ++++||++|+++|++||+|++|+|+.+ +||||||+|.+.++|+++. . ....++|++|.|.++.
T Consensus 7 ~~~~~~~l~V~~L-p~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~~~-~-~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRC-TEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQSLC-G-EDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHHHT-T-CEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHHHc-C-CCcccCCEEEEEEEcC
Confidence 3456789999999 999999999999999999999999985 8999999999999998532 2 2455679999999998
Q ss_pred cccc
Q 008298 424 EKSR 427 (570)
Q Consensus 424 ~K~k 427 (570)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 8754
No 83
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=1.1e-15 Score=132.84 Aligned_cols=80 Identities=18% Similarity=0.296 Sum_probs=75.0
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
+..++|||+|| ++.+|+++|+++|++||.|.+|+|+.+ .++|||||+|.+.++|.+|++.||+..++|+.|.|.++.+
T Consensus 6 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNL-PYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 45789999999 999999999999999999999999986 6799999999999999999999999999999999999976
Q ss_pred cc
Q 008298 425 KS 426 (570)
Q Consensus 425 K~ 426 (570)
+.
T Consensus 85 ~~ 86 (115)
T 3lqv_A 85 NR 86 (115)
T ss_dssp HH
T ss_pred Ch
Confidence 54
No 84
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.61 E-value=7.9e-16 Score=133.96 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=75.6
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
.+..++|||++| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+++..|+|+.|+|.
T Consensus 23 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGSL-HFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEECC-CSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 456789999999 889999999999999999999999975 568999999999999999999999999999999999
Q ss_pred eccccc
Q 008298 421 PYREKS 426 (570)
Q Consensus 421 ~A~~K~ 426 (570)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998875
No 85
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-15 Score=125.06 Aligned_cols=80 Identities=23% Similarity=0.249 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
....++|||+|| ++++|+++|+++|++| .|.+|+|+++ +++|||||+|.+.++|++|++ |++..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nL-p~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGA-PFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECC-CSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECC-CCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 345689999999 9999999999999999 9999999986 679999999999999999999 999999999999999
Q ss_pred cccccc
Q 008298 422 YREKSR 427 (570)
Q Consensus 422 A~~K~k 427 (570)
+.++.+
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 988754
No 86
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=131.98 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCee--------EEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQ--------DVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC 413 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~--------~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~ 413 (570)
...++|||+|| ++.+|+++|+++|++||.|. .|+|+.+ +++|||||+|.+.++|++|++.||++.|+
T Consensus 13 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 13 SDNSAIYVQGL-NDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCEEEEECC-CTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45789999999 89999999999999999999 6999886 67999999999999999999999999999
Q ss_pred CeEEEEeeccccccc
Q 008298 414 GARVLVKPYREKSRL 428 (570)
Q Consensus 414 GR~V~Vk~A~~K~k~ 428 (570)
|+.|+|.+++++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999887654
No 87
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.61 E-value=9e-16 Score=130.25 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=73.9
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeE--------EEeecc----CCCceEEEEECCHHHHHHHHHhCCCe
Q 008298 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPH 410 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~--------VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~ 410 (570)
...+..++|||+|| ++++|+++|+++|++||.|.+ |+|+.+ ++||||||+|.+.++|++|++.||+.
T Consensus 8 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECC-CSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 34466789999999 999999999999999999999 999986 56899999999999999999999999
Q ss_pred EEcCeEEEEeecc
Q 008298 411 FVCGARVLVKPYR 423 (570)
Q Consensus 411 ~i~GR~V~Vk~A~ 423 (570)
.|+|+.|+|.+|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 88
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=9.7e-16 Score=137.91 Aligned_cols=82 Identities=27% Similarity=0.279 Sum_probs=76.4
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
..+..++|||++| ++++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 42 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 42 NPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp CCCCSSCBCEETC-TTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999 999999999999999999999999986 68999999999999999999999999999999999
Q ss_pred eeccccc
Q 008298 420 KPYREKS 426 (570)
Q Consensus 420 k~A~~K~ 426 (570)
.++.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998764
No 89
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.61 E-value=2.9e-15 Score=132.23 Aligned_cols=84 Identities=10% Similarity=0.111 Sum_probs=77.0
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
......++|||+|| ++.+++++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 30 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESC-CSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999 999999999999999999999999986 58999999999999999999999999999999999
Q ss_pred eecccccc
Q 008298 420 KPYREKSR 427 (570)
Q Consensus 420 k~A~~K~k 427 (570)
.+|.++..
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99987653
No 90
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=1.9e-15 Score=129.46 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=73.8
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
.....++|||+|| ++.+|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.|++..|+|+.|+|.
T Consensus 25 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456789999999 999999999999999999999999986 679999999999999999999999999999999999
Q ss_pred ecc
Q 008298 421 PYR 423 (570)
Q Consensus 421 ~A~ 423 (570)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 91
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.61 E-value=1.2e-15 Score=134.63 Aligned_cols=84 Identities=12% Similarity=0.187 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.
T Consensus 19 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345789999999 899999999999999999999999875 569999999999999999999999999999999999
Q ss_pred eccccccch
Q 008298 421 PYREKSRLV 429 (570)
Q Consensus 421 ~A~~K~k~~ 429 (570)
++.++....
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 998776543
No 92
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=128.99 Aligned_cols=82 Identities=11% Similarity=0.012 Sum_probs=74.5
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
..+..++|||++| ++.+++++|+++|++||.|.+++++.+ +++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 11 GKPGPTIIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCSSEEEEEESC-CTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3456789999999 999999999999999999998888775 57899999999999999999999999999999999
Q ss_pred eeccccc
Q 008298 420 KPYREKS 426 (570)
Q Consensus 420 k~A~~K~ 426 (570)
.++..+.
T Consensus 90 ~~a~~~~ 96 (98)
T 2cqp_A 90 VLGSGPS 96 (98)
T ss_dssp EESSCSS
T ss_pred EEcCCCC
Confidence 9987653
No 93
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.3e-16 Score=133.34 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
..++|||++| ++.+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|+ .||++.|+|+.|.|.++
T Consensus 24 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQL-AARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 3579999999 999999999999999999999999975 57999999999999999999 88999999999999998
Q ss_pred ccccc
Q 008298 423 REKSR 427 (570)
Q Consensus 423 ~~K~k 427 (570)
.++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87643
No 94
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=9.3e-16 Score=130.81 Aligned_cols=82 Identities=12% Similarity=0.166 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhc-CCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeE-EcCeEEEEe
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSK-FGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHF-VCGARVLVK 420 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~Fsq-FG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~-i~GR~V~Vk 420 (570)
...++|||++| ++++|+++|+++|++ ||+|.+|+|+.+ ++||||||+|.+.++|++|++.|++.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDL-TPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECC-CTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45689999999 899999999999999 999999999986 679999999999999999999999999 999999999
Q ss_pred eccccccc
Q 008298 421 PYREKSRL 428 (570)
Q Consensus 421 ~A~~K~k~ 428 (570)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99876543
No 95
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.60 E-value=6.3e-16 Score=124.42 Aligned_cols=71 Identities=30% Similarity=0.414 Sum_probs=67.2
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 350 tIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
+|||++| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++ ++++.|+|+.|.|++|
T Consensus 1 ~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGL-SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECC-CSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5999999 999999999999999999999999885 579999999999999999998 8999999999999986
No 96
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.7e-15 Score=127.50 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
...++|||++| ++++|+++|+++|++|| |++|+|+.+ +++|||||+|.+.++|++|+ .|++..|+|+.|.|.
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSCEEEEEESC-CSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45689999999 99999999999999999 999999985 45999999999999999999 899999999999999
Q ss_pred eccccccc
Q 008298 421 PYREKSRL 428 (570)
Q Consensus 421 ~A~~K~k~ 428 (570)
++.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99887643
No 97
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-15 Score=133.31 Aligned_cols=80 Identities=18% Similarity=0.203 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEEEEeec
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVKPY 422 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mn--g~~i~GR~V~Vk~A 422 (570)
.+++++|||+|| ++.++|++|+++|++||+|.+|+|+. .||||||+|.+.++|.+|++.|+ +..|+|++|.|.++
T Consensus 12 ~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRGL-CESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEESC-CSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 456789999999 99999999999999999999999988 69999999999999999999875 45699999999999
Q ss_pred ccccc
Q 008298 423 REKSR 427 (570)
Q Consensus 423 ~~K~k 427 (570)
+.+..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87653
No 98
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.9e-15 Score=126.36 Aligned_cols=81 Identities=28% Similarity=0.369 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
....++|||++| ++.+|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++. ++.|+|+.|.|.
T Consensus 12 ~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~ 88 (103)
T 2cqg_A 12 VQKTSDLIVLGL-PWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEE
T ss_pred cCCCCEEEEEcC-CCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEE
Confidence 355789999999 999999999999999999999999986 5689999999999999999995 789999999999
Q ss_pred eccccccc
Q 008298 421 PYREKSRL 428 (570)
Q Consensus 421 ~A~~K~k~ 428 (570)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99887653
No 99
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.6e-15 Score=125.24 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
.+..++|||++| ++.+|+++|+++|++||+|.+|+|+ ++||||+|.+.++|++|++.||+..|+|+.|+|.++.+
T Consensus 6 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNV-SAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 356789999999 8999999999999999999999996 56999999999999999999999999999999999987
Q ss_pred ccc
Q 008298 425 KSR 427 (570)
Q Consensus 425 K~k 427 (570)
+..
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 100
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-15 Score=131.25 Aligned_cols=80 Identities=26% Similarity=0.392 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
..++|||++| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.|+|+.|.|.++
T Consensus 26 ~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGL-SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEECC-TTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3579999999 999999999999999999999999986 5799999999999999999999 999999999999999
Q ss_pred cccccc
Q 008298 423 REKSRL 428 (570)
Q Consensus 423 ~~K~k~ 428 (570)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 887653
No 101
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.60 E-value=2.1e-15 Score=137.79 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
....++|||++| ++.+|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||+..|+|+.|.|.
T Consensus 67 ~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 67 VEGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCBCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 355789999999 999999999999999999999999986 689999999999999999999999999999999999
Q ss_pred eccccccc
Q 008298 421 PYREKSRL 428 (570)
Q Consensus 421 ~A~~K~k~ 428 (570)
++.++...
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99876543
No 102
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.3e-15 Score=124.05 Aligned_cols=78 Identities=24% Similarity=0.275 Sum_probs=72.3
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecccc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K 425 (570)
...++|||+++ ++|+++|+++|++||+|.+|+|.. +||||||+|.+.++|++|++.|++..|+|+.|+|.++.++
T Consensus 13 ~~~~~l~V~n~---~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS---SCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC---CCCHHHHHHHHhhCCCEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 45789999997 789999999999999999999975 9999999999999999999999999999999999999887
Q ss_pred ccc
Q 008298 426 SRL 428 (570)
Q Consensus 426 ~k~ 428 (570)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 103
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.4e-15 Score=124.57 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=73.2
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcC--CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKF--GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqF--G~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
..+..++|||++| ++.+|+++|+++|++| |.|.+|++ .||||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~g~v~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 11 TMSSVKILYVRNL-MLSTSEEMIEKEFNNIKPGAVERVKK----IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CSSCCCEEEEESC-CTTCCHHHHHHHHHTTSTTCEEEEEE----CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred ccCCcCEEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEE----eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456789999999 8999999999999999 99999988 578999999999999999999999999999999999
Q ss_pred cccccc
Q 008298 422 YREKSR 427 (570)
Q Consensus 422 A~~K~k 427 (570)
++++.+
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 988764
No 104
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=3.3e-15 Score=136.93 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=76.5
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
.....++|||++| ++.+|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|+|
T Consensus 35 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNL-SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456789999999 899999999999999999999999986 46899999999999999999999999999999999
Q ss_pred eecccccc
Q 008298 420 KPYREKSR 427 (570)
Q Consensus 420 k~A~~K~k 427 (570)
.+++++..
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987654
No 105
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-15 Score=131.63 Aligned_cols=81 Identities=12% Similarity=0.054 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCe-eEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPV-QDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V-~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
....++|||++| ++++|+++|+++|++||.| .+|+|++| ++||||||+|.+.++|++|++. +++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNI-PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESC-CTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCc-CCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 345789999999 9999999999999999999 89999986 6899999999999999999998 9999999999999
Q ss_pred ecccccc
Q 008298 421 PYREKSR 427 (570)
Q Consensus 421 ~A~~K~k 427 (570)
++.++..
T Consensus 90 ~a~~~~~ 96 (114)
T 2cpy_A 90 VVTLEDM 96 (114)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9987653
No 106
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.59 E-value=7.5e-16 Score=131.59 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
....++|||+|| ++++|+++|+++|++|| |.+|+|+.+ +++|||||+|.+.++|++|+ .|++..|+|+.|+|
T Consensus 16 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCC-SSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 455789999999 99999999999999999 999999875 46999999999999999999 89999999999999
Q ss_pred eeccccc
Q 008298 420 KPYREKS 426 (570)
Q Consensus 420 k~A~~K~ 426 (570)
.+++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998764
No 107
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=129.72 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCC-eeEEEee-cc----CCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEE
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGP-VQDVRIP-CQ----QKRMFGFVTFVFAETVKQILAKGN--PHFVCGARV 417 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~-V~~VrI~-~D----~sRGFGFVtF~~~e~A~~Al~~mn--g~~i~GR~V 417 (570)
...++|||++| ++.+|+++|+++|++||. |.+|+|+ .+ ++||||||+|.+.++|++|++.|+ +..++|+.|
T Consensus 6 ~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGI-PKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECC-CTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCC-CCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 45789999999 899999999999999999 9999998 44 689999999999999999999996 599999999
Q ss_pred EEeeccccccc
Q 008298 418 LVKPYREKSRL 428 (570)
Q Consensus 418 ~Vk~A~~K~k~ 428 (570)
+|.++.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999887654
No 108
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.59 E-value=2.1e-15 Score=137.37 Aligned_cols=81 Identities=17% Similarity=0.292 Sum_probs=75.8
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
.....++|||++| ++.+|+++|+++|++||+|.+|+|+.+ +||||||+|.+.++|.+|++.||+..|+|+.|+|.++.
T Consensus 69 ~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 69 SCPLDCKVYVGNL-GNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp SSTTSCEEEEESC-CSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 3456789999999 999999999999999999999999986 79999999999999999999999999999999999998
Q ss_pred ccc
Q 008298 424 EKS 426 (570)
Q Consensus 424 ~K~ 426 (570)
++.
T Consensus 147 ~~~ 149 (150)
T 2i2y_A 147 GEK 149 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 109
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-15 Score=127.75 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCC-eeEEEeeccCCCceEEEEECCHHHHHHHHHhCCC-eEEcCeEEEEeec
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGP-VQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP-HFVCGARVLVKPY 422 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~-V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng-~~i~GR~V~Vk~A 422 (570)
.+..++|||++| ++++|+++|+++|++||. |..+.+ . ++|||||+|.+.++|++|++.||+ ..|+|+.|+|.++
T Consensus 5 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~vv~~~~~-~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNL-SPAVTADDLRQLFGDRKLPLAGQVL-L--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECC-CTTCCHHHHHHHHHHTTCCCSSCEE-E--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCceEEEEE-c--CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 356789999999 999999999999999999 666655 3 799999999999999999999999 9999999999999
Q ss_pred cccccc
Q 008298 423 REKSRL 428 (570)
Q Consensus 423 ~~K~k~ 428 (570)
+++...
T Consensus 81 ~~~~~~ 86 (93)
T 2cqh_A 81 VSKKLR 86 (93)
T ss_dssp CCCCCC
T ss_pred cCcccc
Confidence 887543
No 110
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.59 E-value=3.2e-15 Score=130.26 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
....++|||+|| ++++|+++|+++|++||+|++|+|+ ||||||+|.+.++|++|++.||+..|+|+.|.|.++++
T Consensus 28 ~~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPF-PLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSS-CTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 456789999999 9999999999999999999999997 89999999999999999999999999999999999987
Q ss_pred ccc
Q 008298 425 KSR 427 (570)
Q Consensus 425 K~k 427 (570)
+.+
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 754
No 111
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=8.8e-16 Score=130.54 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=73.6
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccccccc
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRL 428 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K~k~ 428 (570)
.+|||++| ++.+|+++|+++|++||+|.+|+|+.+ ++|||||+|.+.++|++|++.|++..++|+.|+|.+++++.+.
T Consensus 1 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNL-GTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECC-CSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 48999999 889999999999999999999999997 8999999999999999999999999999999999999887643
No 112
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.5e-15 Score=128.49 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=72.3
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeE-EEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD-VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~-VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
....+|||++| ++++|+++|+++|++||.|.+ |+|+.+ +++|||||+|.+.++|++|++. ++..|+||.|.|.+
T Consensus 13 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGL-PFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45689999999 999999999999999999998 989875 7899999999999999999998 99999999999999
Q ss_pred cccc
Q 008298 422 YREK 425 (570)
Q Consensus 422 A~~K 425 (570)
+.++
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8654
No 113
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.2e-15 Score=125.28 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
.....++|||++| ++++|+++|+++|++||.| +|+.+ +++|||||+|.+.++|++|++.|++..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNL-SYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESC-CTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 3456789999999 9999999999999999987 55554 789999999999999999999999999999999999
Q ss_pred ecccccc
Q 008298 421 PYREKSR 427 (570)
Q Consensus 421 ~A~~K~k 427 (570)
++.++.+
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9988754
No 114
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=1e-15 Score=128.36 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
.+..++|||++| ++++|+++|+++|++||.|.+++++.+ +++|||||+|.+.++|++|++.||++.|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 12 KPGPTVIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ---CEEEEEECC-CTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 345689999999 999999999999999999998888874 578999999999999999999999999999999999
Q ss_pred ecc
Q 008298 421 PYR 423 (570)
Q Consensus 421 ~A~ 423 (570)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 875
No 115
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.58 E-value=8.1e-16 Score=137.68 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeE--EEeecc----CCCceEEEEECCHHHHHHHHHhCCCe----EEcC
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--VRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPH----FVCG 414 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~--VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~----~i~G 414 (570)
....++|||+|| ++++||++|+++|++||.|.. |+|++| ++||||||+|.+. +|.+|+..||+. .|+|
T Consensus 20 ~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNL-NPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSC-CTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 355789999999 999999999999999999976 999987 5899999999999 999999999999 9999
Q ss_pred eEEEEeecccccc
Q 008298 415 ARVLVKPYREKSR 427 (570)
Q Consensus 415 R~V~Vk~A~~K~k 427 (570)
+.|+|.+++++.+
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987644
No 116
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.5e-16 Score=127.61 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
+..++|||++| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.++|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGL-QPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 46789999999 999999999999999999999999986 5699999999999999999999999999999998876
Q ss_pred cc
Q 008298 422 YR 423 (570)
Q Consensus 422 A~ 423 (570)
..
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 117
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.4e-15 Score=128.76 Aligned_cols=79 Identities=16% Similarity=0.406 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 345 VAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~-~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
.+..++|||++| ++ .+|+++|+++|++||+|.+|+| +||||||+|.+.++|++|++.|++..++|+.|+|.+++
T Consensus 7 ~~~~~~l~V~nl-p~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESS-TTSCCCHHHHHHHHTTTCCCCEEEE----ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 356789999999 87 9999999999999999999999 48999999999999999999999999999999999998
Q ss_pred ccccc
Q 008298 424 EKSRL 428 (570)
Q Consensus 424 ~K~k~ 428 (570)
++.+.
T Consensus 82 ~~~~~ 86 (96)
T 2kvi_A 82 SNARP 86 (96)
T ss_dssp CCCC-
T ss_pred cCCCC
Confidence 76543
No 118
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.58 E-value=3e-15 Score=131.76 Aligned_cols=77 Identities=21% Similarity=0.392 Sum_probs=72.1
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
.++|||++| ++++|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|+ .|+++.|+|+.|+|.+++
T Consensus 36 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNV-DYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEE-CTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 579999999 999999999999999999999999875 67999999999999999999 899999999999999987
Q ss_pred ccc
Q 008298 424 EKS 426 (570)
Q Consensus 424 ~K~ 426 (570)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 119
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.4e-15 Score=129.55 Aligned_cols=83 Identities=22% Similarity=0.238 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCe----eEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPV----QDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V----~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
.+..++|||++| ++.+|+++|+++|++||.| ..+++..+++||||||+|.+.++|++|++.|++..|+|+.|.|.
T Consensus 22 ~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNL-SPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECC-CTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 456789999999 8999999999999999999 66777766899999999999999999999999999999999999
Q ss_pred eccccccc
Q 008298 421 PYREKSRL 428 (570)
Q Consensus 421 ~A~~K~k~ 428 (570)
++.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99887643
No 120
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=124.53 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=65.7
Q ss_pred CCEEEEcCCCCCCC------CHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCe-EEE
Q 008298 348 SRQIYLTFPAESTF------TEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVL 418 (570)
Q Consensus 348 ~rtIfVg~L~~~~~------TEedLr~~FsqFG~V~~VrI~~D--~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR-~V~ 418 (570)
.++|||+|| ++.+ |+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+ .|+
T Consensus 1 ~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESC-CCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCC-CCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 368999999 7888 78999999999999999999853 7899999999999999999999999999999 887
Q ss_pred E
Q 008298 419 V 419 (570)
Q Consensus 419 V 419 (570)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 121
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.58 E-value=5.9e-15 Score=137.03 Aligned_cols=83 Identities=24% Similarity=0.411 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...++|||++| ++.+|+++|+++|++||.|+.|+|+.+ +++|||||+|.+.++|.+|++. +++.|+|+.|.|.+
T Consensus 102 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 102 LTVKKIFVGGI-KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp -CCSEEEEECC-TTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCcceEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 45689999999 899999999999999999999999986 5799999999999999999998 89999999999999
Q ss_pred ccccccchh
Q 008298 422 YREKSRLVD 430 (570)
Q Consensus 422 A~~K~k~~~ 430 (570)
+.++.....
T Consensus 180 a~~k~~~~~ 188 (196)
T 1l3k_A 180 ALSKQEMAS 188 (196)
T ss_dssp CC-------
T ss_pred cCChhHhcc
Confidence 998876543
No 122
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=4.7e-16 Score=129.37 Aligned_cols=78 Identities=28% Similarity=0.385 Sum_probs=69.2
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
++|||+|| ++++++++|+++|++||+|++|+|+.+ +++|||||+|.+.+ |.+|+..||+..++|+.|+|.+|.+
T Consensus 2 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNL-VYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEE-CTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCC-CCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999 999999999999999999999999985 57999999999999 9999999999999999999999987
Q ss_pred cccc
Q 008298 425 KSRL 428 (570)
Q Consensus 425 K~k~ 428 (570)
+...
T Consensus 80 ~~~~ 83 (90)
T 2ki2_A 80 KKSL 83 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 123
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-15 Score=123.16 Aligned_cols=72 Identities=25% Similarity=0.395 Sum_probs=68.3
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
++|||+|| ++++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.++ ..++|+.|.|++|
T Consensus 1 ~~l~v~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESC-CSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999 999999999999999999999999885 579999999999999999999999 9999999999987
No 124
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.8e-15 Score=131.06 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=72.0
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecccc
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K 425 (570)
..++|||+|| ++.+|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..|+|+.|.|.++...
T Consensus 9 ~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNL-PAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 3579999999 89999999999999999999999987 8999999999999999999999999999999999998764
No 125
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.8e-15 Score=134.54 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCC-CCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEEEEee
Q 008298 345 VAGSRQIYLTFPAEST-FTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVKP 421 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~-~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mn--g~~i~GR~V~Vk~ 421 (570)
.++.++|||+|| +++ +||++|+++|++||+|.+|+|++ +||||||+|.+.++|.+|++.|+ +..|+||.|+|.+
T Consensus 22 ~~p~~~l~V~NL-p~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNL-PHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESC-CCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCC-CCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 456889999999 887 99999999999999999999987 89999999999999999999874 5679999999999
Q ss_pred ccccccc
Q 008298 422 YREKSRL 428 (570)
Q Consensus 422 A~~K~k~ 428 (570)
++.+...
T Consensus 99 a~~~~~~ 105 (112)
T 1x4f_A 99 SEKYKKL 105 (112)
T ss_dssp ECSCSSS
T ss_pred Ccccccc
Confidence 9876543
No 126
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.5e-15 Score=132.06 Aligned_cols=79 Identities=11% Similarity=0.125 Sum_probs=72.6
Q ss_pred CCCCEEEE--cCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEE-----cCeEEE
Q 008298 346 AGSRQIYL--TFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV-----CGARVL 418 (570)
Q Consensus 346 ~~~rtIfV--g~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i-----~GR~V~ 418 (570)
.++++||| |+| ++.+||++|+++|++||+|++|.|+. .||||||+|.+.++|++|++.||+..| .|+.|.
T Consensus 23 ~pt~~L~V~Ng~L-~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 23 YATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp SCCSEEEEETCTG-GGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCEEEEECCCC-CCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 45789999 889 99999999999999999999999987 699999999999999999999999999 799999
Q ss_pred Eeecccccc
Q 008298 419 VKPYREKSR 427 (570)
Q Consensus 419 Vk~A~~K~k 427 (570)
|.+++..+.
T Consensus 100 v~~a~~~p~ 108 (114)
T 2cq2_A 100 LNFVEKVQW 108 (114)
T ss_dssp EEEESCCCC
T ss_pred EEecccCcc
Confidence 999876543
No 127
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.57 E-value=2.8e-15 Score=132.43 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCC---eeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGP---VQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~---V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
...++|||++| ++++|+++|+++|++||. |.+|+|+++ ++||||||+|.+.++|++|++ ++++.|+||.|+|
T Consensus 15 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGL-PWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45679999999 999999999999999999 899999986 679999999999999999999 7999999999999
Q ss_pred eeccccc
Q 008298 420 KPYREKS 426 (570)
Q Consensus 420 k~A~~K~ 426 (570)
.++..+.
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987554
No 128
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=5.9e-15 Score=136.99 Aligned_cols=83 Identities=11% Similarity=0.161 Sum_probs=74.6
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...++|||+|| ++.+|+++|+++|++||+|..|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.+
T Consensus 70 ~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 70 VEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp C-CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44679999999 889999999999999999999999986 4689999999999999999999999999999999999
Q ss_pred ccccccch
Q 008298 422 YREKSRLV 429 (570)
Q Consensus 422 A~~K~k~~ 429 (570)
+.++....
T Consensus 149 a~~~~~~~ 156 (165)
T 1rk8_A 149 CFVKGPKR 156 (165)
T ss_dssp SEECC---
T ss_pred ecCCCCCC
Confidence 98876543
No 129
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=6.9e-15 Score=127.28 Aligned_cols=77 Identities=16% Similarity=0.312 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCC-CCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 345 VAGSRQIYLTFPAEST-FTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~-~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
.+..++|||++| ++. +|+++|+++|++||+|++|+| ++|||||+|.+.++|++|++.|++..|+|+.|+|.++.
T Consensus 24 ~~~~~~l~V~nl-~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 24 KSINSRVFIGNL-NTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp TTCSSEEEECSC-CCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCCCcEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 345689999999 888 999999999999999999999 78999999999999999999999999999999999997
Q ss_pred ccc
Q 008298 424 EKS 426 (570)
Q Consensus 424 ~K~ 426 (570)
++.
T Consensus 99 ~~~ 101 (110)
T 1wf1_A 99 EPK 101 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 130
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=1.2e-14 Score=140.96 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=75.3
Q ss_pred CCCCCCCEEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 343 GIVAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~~-~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...+.+++|||+|| ++ ++|+++|+++|++||+|.+|+|+.++ +|||||+|.+.++|++|++.+++..|+|+.|.|.+
T Consensus 29 ~~~~~~~~l~V~nL-p~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 29 LAGAGNSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp GGCCCCSEEEEESC-CTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCCCEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44567899999999 77 99999999999999999999999875 89999999999999999999999999999999999
Q ss_pred cccc
Q 008298 422 YREK 425 (570)
Q Consensus 422 A~~K 425 (570)
+..+
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 9865
No 131
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.56 E-value=3.1e-15 Score=136.83 Aligned_cols=80 Identities=15% Similarity=0.056 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCC---eeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGP---VQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~---V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~ 418 (570)
....++|||+|| ++++||++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++ +|+..|+||.|+
T Consensus 41 ~~~~~~lfVgnL-p~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGL-PWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESC-CTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 345679999999 999999999999999999 899999986 679999999999999999999 899999999999
Q ss_pred Eeeccccc
Q 008298 419 VKPYREKS 426 (570)
Q Consensus 419 Vk~A~~K~ 426 (570)
|.++.++.
T Consensus 119 V~~a~~~e 126 (136)
T 2hgl_A 119 VFKSHRTE 126 (136)
T ss_dssp EEECCHHH
T ss_pred EEECChHH
Confidence 99986543
No 132
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=7.2e-15 Score=129.38 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=70.1
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
..+|||+|| ++++||++|+++|++| .|.+|+|++| ++||||||+|.+.++|++|+ .+|++.|+||.|.|..+.+
T Consensus 16 ~~~v~V~nL-p~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGM-PFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECC-CSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 469999999 9999999999999999 8999999986 68999999999999999999 5799999999999999876
Q ss_pred c
Q 008298 425 K 425 (570)
Q Consensus 425 K 425 (570)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 133
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.56 E-value=2.6e-15 Score=135.96 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...++|||++| ++++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.|++..|+|+.|+|.+
T Consensus 45 ~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 45 EGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGCCCEEEECC-CSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44679999999 999999999999999999999999875 6799999999999999999999999999999999999
Q ss_pred ccccccc
Q 008298 422 YREKSRL 428 (570)
Q Consensus 422 A~~K~k~ 428 (570)
++++...
T Consensus 124 a~~~~~~ 130 (135)
T 2lea_A 124 ARYGRPP 130 (135)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 134
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-15 Score=129.45 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=72.3
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...++|||+|| ++++|+++|+++|++||.|.. +++.+ ++||||||+|.+.++|++|++ ||+..|+|+.|+|.+
T Consensus 15 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGNL-NPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp SCSEEEEEECC-CTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 45789999999 999999999999999999988 55554 789999999999999999999 999999999999999
Q ss_pred ccccccc
Q 008298 422 YREKSRL 428 (570)
Q Consensus 422 A~~K~k~ 428 (570)
+.++...
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9877543
No 135
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=9.1e-15 Score=122.92 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEE-eeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVR-IPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~Vr-I~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
...++|||++| ++.+|+++|+++|++||+|.+|+ |+.++..|.|||+|.+.++|++|++.||+..|+|+.|+|.++.+
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNI-PPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEE-CSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34689999999 99999999999999999999995 88887777799999999999999999999999999999999988
Q ss_pred c
Q 008298 425 K 425 (570)
Q Consensus 425 K 425 (570)
+
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 7
No 136
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=6.2e-15 Score=123.94 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecccc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K 425 (570)
...++|||++| ++.+|+++|+++|++||.|..| ...++++|||||+|.+.++|++|++.|++..|+|+.|.|.++.++
T Consensus 14 ~~~~~l~V~nL-~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNL-SFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESC-CSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 45789999999 9999999999999999999877 333478999999999999999999999999999999999999887
Q ss_pred cc
Q 008298 426 SR 427 (570)
Q Consensus 426 ~k 427 (570)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 137
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.55 E-value=2.5e-15 Score=136.14 Aligned_cols=77 Identities=19% Similarity=0.345 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
..++|||++| ++.+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++ +++..++|+.|.|.+|
T Consensus 86 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 86 KTGKIFVGGI-GPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HCEEEEEEEE-CTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred CCCeEEECCC-CCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 3569999999 899999999999999999999999985 579999999999999999998 7999999999999999
Q ss_pred ccc
Q 008298 423 REK 425 (570)
Q Consensus 423 ~~K 425 (570)
.+|
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 876
No 138
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=2.2e-15 Score=120.95 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=67.0
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 350 tIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
||||++| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++. +++.++|+.|.|++|
T Consensus 1 ~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGL-SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCC-CSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 6999999 999999999999999999999999885 6799999999999999999997 899999999999875
No 139
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.2e-15 Score=122.09 Aligned_cols=78 Identities=27% Similarity=0.456 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecccc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K 425 (570)
...++|||++| ++++|+++|+++|++||+|.+|+|+.+ +||||||+|.+.++|++|+.. ...++|++|.|.++.++
T Consensus 3 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 3 SGSSGVFVGRC-TGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPK 78 (88)
T ss_dssp SCCCEEEEESC-CSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCC
Confidence 34689999999 999999999999999999999999985 899999999999999875433 46679999999999887
Q ss_pred cc
Q 008298 426 SR 427 (570)
Q Consensus 426 ~k 427 (570)
..
T Consensus 79 ~~ 80 (88)
T 1wf0_A 79 HN 80 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 140
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.54 E-value=1.1e-14 Score=121.31 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccccc
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 426 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K~ 426 (570)
..++|||++| ++++++++|+++|++| +|.+|+|. ++||||||+|.+.++|++|++.||+..++|++|+|.++..+.
T Consensus 4 ~~~~l~V~nL-p~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNL-PQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESC-CSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 4579999999 9999999999999999 99999996 599999999999999999999999999999999999986654
No 141
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2e-15 Score=133.67 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
.....+|||++| ++++|+++|+++|++||.|.++.++.+ +++|||||+|.+.++|++|++ ||++.|+|+.|.|.
T Consensus 22 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGL-PFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECC-CTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 345689999999 999999999999999999998555542 679999999999999999999 89999999999999
Q ss_pred eccccc
Q 008298 421 PYREKS 426 (570)
Q Consensus 421 ~A~~K~ 426 (570)
++.++.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998765
No 142
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.7e-15 Score=127.61 Aligned_cols=79 Identities=18% Similarity=0.103 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
....++|||++| ++++||++|+++|++||.| +|+|++| ++||||||+|.+.++|++|++ +|++.|+||.|+|.+
T Consensus 12 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGL-PYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESC-CTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 345689999999 9999999999999999955 9999986 679999999999999999995 699999999999999
Q ss_pred ccccc
Q 008298 422 YREKS 426 (570)
Q Consensus 422 A~~K~ 426 (570)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87655
No 143
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.54 E-value=3e-15 Score=129.53 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCC---eeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGP---VQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~---V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~ 418 (570)
.....+|||+|| ++++|+++|+++|++||. |.+|+|+.| ++||||||+|.+.++|++|++ ++++.|+||.|+
T Consensus 8 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGL-PWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECC-CSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCC-CCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345679999999 999999999999999998 999999986 689999999999999999999 899999999999
Q ss_pred Eeeccccc
Q 008298 419 VKPYREKS 426 (570)
Q Consensus 419 Vk~A~~K~ 426 (570)
|.++.++.
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99987654
No 144
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=126.26 Aligned_cols=79 Identities=22% Similarity=0.322 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEE--------cC
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFV--------CG 414 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i--------~G 414 (570)
...++|||++| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..| .+
T Consensus 23 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNL-PLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 45689999999 899999999999999999999999986 5689999999999999999999999999 57
Q ss_pred eEEEEeecccc
Q 008298 415 ARVLVKPYREK 425 (570)
Q Consensus 415 R~V~Vk~A~~K 425 (570)
+.|.|.++.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999998865
No 145
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=121.63 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=68.4
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecccc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K 425 (570)
...++|||++| ++++|+++|+++|++||+|.+|.+-....+ ||||+|.+.++|++|++ |+++.|+|+.|.|.++.++
T Consensus 6 ~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGF-PRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECC-CTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 35679999999 999999999999999999999822222233 99999999999999999 9999999999999998766
Q ss_pred cc
Q 008298 426 SR 427 (570)
Q Consensus 426 ~k 427 (570)
..
T Consensus 83 ~~ 84 (94)
T 2e5g_A 83 EF 84 (94)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 146
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=4.8e-15 Score=126.19 Aligned_cols=80 Identities=20% Similarity=0.429 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
..++|||++| ++.+|+++|+++|++||.|.+|+|+.+ ++||||||+|.+.++|++|++ +++.++|+.|.|.++.
T Consensus 8 ~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGI-DVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4579999999 899999999999999999999999986 578999999999999999999 8999999999999998
Q ss_pred ccccch
Q 008298 424 EKSRLV 429 (570)
Q Consensus 424 ~K~k~~ 429 (570)
++....
T Consensus 85 ~~~~~~ 90 (102)
T 2xs2_A 85 RKQNLS 90 (102)
T ss_dssp ECC---
T ss_pred cCcchh
Confidence 776543
No 147
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.54 E-value=3.7e-15 Score=140.43 Aligned_cols=81 Identities=15% Similarity=0.312 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...++|||++| ++.+|+++|+++|++||.|++|+|+.+ +++|||||+|.+.++|.+|++.|++..|+|+.|.|.+
T Consensus 123 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 123 RAFNRIYVASV-HQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp TTSCEEEEECC-CTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred CCCcEEEEeCC-CCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 35689999999 899999999999999999999999986 5699999999999999999999999999999999999
Q ss_pred cccccc
Q 008298 422 YREKSR 427 (570)
Q Consensus 422 A~~K~k 427 (570)
+.++..
T Consensus 202 a~~~~~ 207 (216)
T 2qfj_A 202 AVTPPM 207 (216)
T ss_dssp CSSCSS
T ss_pred ecCCCC
Confidence 987743
No 148
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.54 E-value=9.1e-15 Score=132.12 Aligned_cols=84 Identities=14% Similarity=0.195 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeE--------EEeec-cCCCceEEEEECCHHHHHHHHHhCCCeEEcCe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPC-QQKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~--------VrI~~-D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR 415 (570)
....++|||+|| ++.+|+++|+++|++||.|.. |++.. ++++|||||+|.+.++|.+|+..||+..|+|+
T Consensus 42 ~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNL-AKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEE-CTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 356789999999 999999999999999999976 44433 47899999999999999999999999999999
Q ss_pred EEEEeeccccccch
Q 008298 416 RVLVKPYREKSRLV 429 (570)
Q Consensus 416 ~V~Vk~A~~K~k~~ 429 (570)
.|.|.+++.+....
T Consensus 121 ~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 121 PMVVQFARSARPKQ 134 (143)
T ss_dssp ECEEEECCCSCC--
T ss_pred EEEEEECCCCCCcc
Confidence 99999998765443
No 149
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.53 E-value=5.8e-15 Score=145.18 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCC--CeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFG--PVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG--~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
..++|||+|| ++++||++|+++|++|| +|++|+|++| ++||||||+|.+.++|++||+.||++.|+|+.|+|.
T Consensus 67 ~~~~lfVgnL-~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESC-CTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 4569999999 99999999999999999 9999999987 579999999999999999999999999999999999
Q ss_pred eccccc
Q 008298 421 PYREKS 426 (570)
Q Consensus 421 ~A~~K~ 426 (570)
+++++.
T Consensus 146 ~a~~~~ 151 (229)
T 3q2s_C 146 PVNKQF 151 (229)
T ss_dssp ECCHHH
T ss_pred ECCCCc
Confidence 997654
No 150
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.52 E-value=1.9e-14 Score=136.19 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=72.7
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC--eEEEEeecccc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYREK 425 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~G--R~V~Vk~A~~K 425 (570)
..+|||+|| ++.+|+++|+++|++||+|++|+|..++++|||||+|.+.++|++|++.||+..|.| +.|+|.+++++
T Consensus 46 vl~l~VgNL-~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSC-CSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred eEEEEEeCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 358999999 999999999999999999999999876778999999999999999999999999966 99999999887
Q ss_pred c
Q 008298 426 S 426 (570)
Q Consensus 426 ~ 426 (570)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 4
No 151
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.52 E-value=2.9e-14 Score=137.56 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCC-CCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 346 AGSRQIYLTFPAE-STFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 346 ~~~rtIfVg~L~~-~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
+.+++|||+|| + +.+|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|++|++.||+..+.|+.|+|.+++.
T Consensus 2 ~~~~~l~V~nL-~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGL-DQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECC-CTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCC-CcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 56789999999 6 89999999999999999999999986 689999999999999999999999999999999999875
Q ss_pred cc
Q 008298 425 KS 426 (570)
Q Consensus 425 K~ 426 (570)
+.
T Consensus 80 ~~ 81 (205)
T 3tyt_A 80 PA 81 (205)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 152
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.52 E-value=3.8e-14 Score=129.81 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecccc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K 425 (570)
...++|||+|| ++.+|+++|+++|++||.|..+ ...++++|||||+|.+.++|.+|++.|++..|+|+.|.|.++.+|
T Consensus 97 ~~~~~l~v~nl-p~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNL-SFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESC-CSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCC-CCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 45789999999 8999999999999999999887 333478999999999999999999999999999999999999876
Q ss_pred c
Q 008298 426 S 426 (570)
Q Consensus 426 ~ 426 (570)
+
T Consensus 175 ~ 175 (175)
T 1fje_B 175 G 175 (175)
T ss_dssp C
T ss_pred C
Confidence 3
No 153
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.52 E-value=2.9e-14 Score=117.29 Aligned_cols=72 Identities=21% Similarity=0.375 Sum_probs=67.7
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcC----C-------CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKF----G-------PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqF----G-------~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~G 414 (570)
...++|||+|| ++++|+++|+++|++| | +|.+|+++. .||||||+|.+.++|++|+ .||+..|+|
T Consensus 4 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 4 GSARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp GGGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 34689999999 9999999999999999 8 999999987 6999999999999999999 999999999
Q ss_pred eEEEEee
Q 008298 415 ARVLVKP 421 (570)
Q Consensus 415 R~V~Vk~ 421 (570)
+.|+|.+
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999974
No 154
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.52 E-value=2e-14 Score=134.75 Aligned_cols=78 Identities=17% Similarity=0.251 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecccc
Q 008298 347 GSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (570)
Q Consensus 347 ~~rtIfVg~L~~~-~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K 425 (570)
.+++|||+|| ++ .+|+++|+++|++||+|.+|+|+.++ +|||||+|.+.++|++|++.+++..++|+.|.|.++..+
T Consensus 2 ~~~~l~v~nl-p~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECC-CSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 3579999999 77 99999999999999999999999864 899999999999999999999999999999999999865
Q ss_pred c
Q 008298 426 S 426 (570)
Q Consensus 426 ~ 426 (570)
.
T Consensus 80 ~ 80 (198)
T 1qm9_A 80 N 80 (198)
T ss_dssp S
T ss_pred C
Confidence 4
No 155
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.51 E-value=3e-14 Score=136.64 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
.+.+||||||| ++++||++|+++|++||+|++|+|++| +++|||||+|.+.++|++|++.+++..+.|+.|+|.+
T Consensus 13 ~p~~tlfVgnL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDL-HPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 45689999999 999999999999999999999999986 6799999999999999999999999999999999999
Q ss_pred cccccc
Q 008298 422 YREKSR 427 (570)
Q Consensus 422 A~~K~k 427 (570)
+.....
T Consensus 92 ~~~~~~ 97 (213)
T 4f02_A 92 SQRDPS 97 (213)
T ss_dssp CCCCTH
T ss_pred cccccc
Confidence 876543
No 156
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=1.2e-15 Score=133.25 Aligned_cols=82 Identities=13% Similarity=0.189 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeE--------EEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC 413 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~--------VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~ 413 (570)
+..++|||+|| ++.+++++|+++|++||.|.+ |+|+.+ ++||||||+|.+.++|++|++.||+..|+
T Consensus 5 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 45789999999 899999999999999999999 889876 57999999999999999999999999999
Q ss_pred CeEEEEeeccccccc
Q 008298 414 GARVLVKPYREKSRL 428 (570)
Q Consensus 414 GR~V~Vk~A~~K~k~ 428 (570)
|+.|+|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999887643
No 157
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.2e-14 Score=120.86 Aligned_cols=81 Identities=20% Similarity=0.185 Sum_probs=71.4
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
.....++|||++| ++.+|+++|+++|+.|+ +|+++.+ +++|||||+|.+.++|++|++.||++.|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 11 RSQPSKTLFVKGL-SEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSCCCSSEEEECC-CTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456789999999 99999999999999885 5566654 57899999999999999999999999999999999
Q ss_pred eeccccccc
Q 008298 420 KPYREKSRL 428 (570)
Q Consensus 420 k~A~~K~k~ 428 (570)
.+++++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999887643
No 158
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.51 E-value=2.2e-14 Score=127.88 Aligned_cols=78 Identities=24% Similarity=0.275 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecccc
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K 425 (570)
...++|||+++ ++|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..|+|+.|+|.++.++
T Consensus 37 ~~~~~lfVgnl---~~te~~L~~~F~~~G~I~~v~i~~--~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS---SCCHHHHHHHHSTTCCCSCEEEET--TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC---CCCHHHHHHHHHccCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 45789999997 599999999999999999999985 9999999999999999999999999999999999999887
Q ss_pred ccc
Q 008298 426 SRL 428 (570)
Q Consensus 426 ~k~ 428 (570)
...
T Consensus 112 ~~~ 114 (121)
T 2bz2_A 112 PML 114 (121)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 159
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.50 E-value=4.6e-14 Score=127.64 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
+.++|||++| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+++..++|+.|.|.++
T Consensus 2 ~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYL-PQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 4689999999 899999999999999999999999885 47899999999999999999999999999999999998
Q ss_pred cccc
Q 008298 423 REKS 426 (570)
Q Consensus 423 ~~K~ 426 (570)
.++.
T Consensus 81 ~~~~ 84 (168)
T 1b7f_A 81 RPGG 84 (168)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8664
No 160
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.50 E-value=5.8e-14 Score=126.29 Aligned_cols=79 Identities=14% Similarity=0.281 Sum_probs=73.5
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
.++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+++..++|+.|.|.++.
T Consensus 2 ~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYL-PQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 579999999 899999999999999999999999885 467999999999999999999999999999999999988
Q ss_pred cccc
Q 008298 424 EKSR 427 (570)
Q Consensus 424 ~K~k 427 (570)
++..
T Consensus 81 ~~~~ 84 (167)
T 1fxl_A 81 PSSA 84 (167)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 6643
No 161
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.49 E-value=5.2e-14 Score=127.32 Aligned_cols=76 Identities=20% Similarity=0.289 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcC--eEEEE
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLV 419 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~G--R~V~V 419 (570)
...++|||++| +..+++++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.|++..++| ++|+|
T Consensus 87 ~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 87 IKDTNLYVTNL-PRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTCEEEEESC-CTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCCEEEeCC-CCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 45689999999 889999999999999999999999885 468999999999999999999999999988 99999
Q ss_pred eec
Q 008298 420 KPY 422 (570)
Q Consensus 420 k~A 422 (570)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 162
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.4e-14 Score=130.31 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCe----eEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPV----QDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V----~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
...+|||+|| ++++||++|+++|++||+| .+|+|++| ++||||||+|.+.++|++|++. +++.|+||.|.|
T Consensus 22 ~~~~v~V~nL-p~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGL-PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSC-CTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 4579999999 9999999999999999986 69999985 6899999999999999999998 999999999999
Q ss_pred eeccccc
Q 008298 420 KPYREKS 426 (570)
Q Consensus 420 k~A~~K~ 426 (570)
..+.++.
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9986543
No 163
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.49 E-value=5.6e-14 Score=133.07 Aligned_cols=83 Identities=10% Similarity=0.116 Sum_probs=76.4
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
.....++|||+|| ++.+++++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.+|+..|+|+.|+|.
T Consensus 84 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECC-CSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456789999999 999999999999999999999999985 679999999999999999999999999999999999
Q ss_pred ecccccc
Q 008298 421 PYREKSR 427 (570)
Q Consensus 421 ~A~~K~k 427 (570)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9876543
No 164
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=4.7e-14 Score=126.79 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=72.6
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecccc
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~K 425 (570)
|+|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++.+++..+.|+.|.|.++.++
T Consensus 1 R~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNL-DKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEE-ETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCC-CCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 68999999 899999999999999999999999886 57899999999999999999999999999999999998765
Q ss_pred c
Q 008298 426 S 426 (570)
Q Consensus 426 ~ 426 (570)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 165
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.49 E-value=7.4e-14 Score=126.81 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEc---CeEEEE
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC---GARVLV 419 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~---GR~V~V 419 (570)
...++|||++| ++.+|+++|+++|++||.|++|+|+.+ +++|||||+|.+.++|.+|++.||+..+. |+.|.|
T Consensus 93 ~~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMI-SKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCC-CCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 45789999999 999999999999999999999999986 56999999999999999999999997776 499999
Q ss_pred eecc
Q 008298 420 KPYR 423 (570)
Q Consensus 420 k~A~ 423 (570)
.+|.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 166
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.49 E-value=4e-14 Score=127.39 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeE--EEE
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGAR--VLV 419 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~--V~V 419 (570)
...++|||++| +..+++++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.|++..++|+. |.|
T Consensus 86 ~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 86 IRDANLYVSGL-PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GTTCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCcEEECCC-CCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 45679999999 889999999999999999999999885 46899999999999999999999999999975 888
Q ss_pred eec
Q 008298 420 KPY 422 (570)
Q Consensus 420 k~A 422 (570)
.+|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 167
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.48 E-value=2.1e-14 Score=126.13 Aligned_cols=76 Identities=17% Similarity=0.097 Sum_probs=67.1
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeE-----EEEee
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGAR-----VLVKP 421 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~-----V~Vk~ 421 (570)
...+|||+|| ++++|+++|+++|++||+|++|+|+.+ |||||+|.+.++|++|++.||+..|+|+. |+|..
T Consensus 15 ~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 15 SENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp --CCEEEEEC-CSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 3579999999 899999999999999999999999875 99999999999999999999999999998 77777
Q ss_pred ccccc
Q 008298 422 YREKS 426 (570)
Q Consensus 422 A~~K~ 426 (570)
+.++.
T Consensus 91 ~~~~~ 95 (115)
T 3beg_B 91 DGPRS 95 (115)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 66543
No 168
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.48 E-value=1.2e-14 Score=133.39 Aligned_cols=80 Identities=14% Similarity=0.034 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
...++|||++| ++++||++|+++|++|| |++|+|++| ++||||||+|.+.++|++|+ .+|++.|+||.|+|..+
T Consensus 44 ~~~~~lfV~nL-p~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGL-PYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSC-CTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34679999999 99999999999999999 779999986 68999999999999999999 77999999999999998
Q ss_pred cccccc
Q 008298 423 REKSRL 428 (570)
Q Consensus 423 ~~K~k~ 428 (570)
.++...
T Consensus 121 ~~~~~~ 126 (139)
T 2hgn_A 121 STTGAS 126 (139)
T ss_dssp CCSCC-
T ss_pred CCCCCC
Confidence 876543
No 169
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.48 E-value=6.7e-14 Score=129.92 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=72.3
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++. +++.++|+.|.|.+
T Consensus 11 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 11 EQLRKLFIGGL-SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp GGGGEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 45789999999 999999999999999999999999986 4689999999999999999988 99999999999999
Q ss_pred cccccc
Q 008298 422 YREKSR 427 (570)
Q Consensus 422 A~~K~k 427 (570)
+..+..
T Consensus 89 ~~~~~~ 94 (196)
T 1l3k_A 89 AVSRED 94 (196)
T ss_dssp CCC---
T ss_pred ccCccc
Confidence 876543
No 170
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.47 E-value=1.4e-13 Score=125.56 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=70.7
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCce-EEEEECCHHHHHHHHHhCCCeEEcC--eEEEEeecccc
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMF-GFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYREK 425 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGF-GFVtF~~~e~A~~Al~~mng~~i~G--R~V~Vk~A~~K 425 (570)
-+|||+|| ++.+|+++|+++|++||+|.+|+|+. +.||| |||+|.+.++|++|++.|||..|.| +.|+|.+++++
T Consensus 29 L~I~V~NL-~~~vte~~L~~lFs~yG~V~~V~i~~-~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESC-CSCCCHHHHHHHHTTSSCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCC-CCCCCHHHHHHHHhCcCCEEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 48999999 99999999999999999999998876 46788 9999999999999999999999998 99999999876
Q ss_pred c
Q 008298 426 S 426 (570)
Q Consensus 426 ~ 426 (570)
.
T Consensus 107 ~ 107 (130)
T 3zzy_A 107 S 107 (130)
T ss_dssp S
T ss_pred c
Confidence 4
No 171
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.47 E-value=4e-14 Score=128.11 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCee--EEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQ--DVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~--~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
...++|||+|| ++++||++|+++|++| .|+ +|+|++| ++||||||+|.+.++|++|++. ++..|+||.|.|.
T Consensus 40 ~~~~~lfVgnL-p~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGL-PFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECC-CTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 45679999999 9999999999999999 677 9999986 6899999999999999999997 7799999999999
Q ss_pred ecccc
Q 008298 421 PYREK 425 (570)
Q Consensus 421 ~A~~K 425 (570)
++.++
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 172
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=1.5e-13 Score=124.11 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=68.7
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCce-EEEEECCHHHHHHHHHhCCCeEEcC--eEEEEeeccccc
Q 008298 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMF-GFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYREKS 426 (570)
Q Consensus 350 tIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGF-GFVtF~~~e~A~~Al~~mng~~i~G--R~V~Vk~A~~K~ 426 (570)
.|||+|| ++.+|+++|+++|++||.|.+|+|+. ..|| |||+|.+.++|..|++.|||..|.| +.|+|.+|+++.
T Consensus 27 ~l~V~NL-~~~vt~~~L~~~Fs~yG~V~~v~i~~--~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESC-CSCCCHHHHHHHHTTTSCEEEEEEEE--SSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCc-CCCCCHHHHHHHHHhcCCEEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 5789999 99999999999999999999999976 3597 9999999999999999999999988 699999998775
No 173
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=119.82 Aligned_cols=76 Identities=20% Similarity=0.353 Sum_probs=67.1
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-------~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~ 418 (570)
...++|||++| ++++|+++|+++|++||+|. ++++.+ ++||||||+|.+.++|++|++.| +.++|+.+.
T Consensus 6 ~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGL-PPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--LEEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECC-CTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--EEETTEEEE
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--hhcCCcEEE
Confidence 45689999999 99999999999999999999 888874 56999999999999999999998 468999888
Q ss_pred Eeecccc
Q 008298 419 VKPYREK 425 (570)
Q Consensus 419 Vk~A~~K 425 (570)
|..+.+.
T Consensus 82 ~~~~~~~ 88 (114)
T 2dnl_A 82 CVSSPTI 88 (114)
T ss_dssp EECCSSS
T ss_pred eccCCCc
Confidence 8766543
No 174
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.46 E-value=1.8e-13 Score=146.69 Aligned_cols=82 Identities=16% Similarity=0.339 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
....++|||+|| ++.+|+++|+++|++||+|+.|+|+.+ +++|||||+|.+.++|.+||+.||++.|+|+.|.|.
T Consensus 99 ~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARV-NYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345789999999 999999999999999999999999976 579999999999999999999999999999999999
Q ss_pred ecccccc
Q 008298 421 PYREKSR 427 (570)
Q Consensus 421 ~A~~K~k 427 (570)
++.++..
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9987643
No 175
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.46 E-value=1.3e-13 Score=128.20 Aligned_cols=81 Identities=14% Similarity=0.280 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...++|||++| ++.+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.|++..|+|+.|.|.+
T Consensus 112 ~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECC-CTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45689999999 889999999999999999999999986 4699999999999999999999999999999999999
Q ss_pred cccccc
Q 008298 422 YREKSR 427 (570)
Q Consensus 422 A~~K~k 427 (570)
+.++.+
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 988764
No 176
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.45 E-value=3.6e-13 Score=133.73 Aligned_cols=81 Identities=17% Similarity=0.307 Sum_probs=74.3
Q ss_pred CCCCCCEEEEcCCCCCC-CCHHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEE
Q 008298 344 IVAGSRQIYLTFPAEST-FTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~-~TEedLr~~FsqFG~V~~VrI~~D-----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V 417 (570)
.....++|||+|| ++. +|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|+ .||+..|+|+.|
T Consensus 206 ~~~~~~~l~v~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i 283 (292)
T 2ghp_A 206 ATLEGREIMIRNL-STELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREI 283 (292)
T ss_dssp -CCTTTEEEEEEE-CTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEE
T ss_pred cCCCCceEEEECC-CcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEE
Confidence 3456789999999 888 999999999999999999999885 46999999999999999999 999999999999
Q ss_pred EEeeccccc
Q 008298 418 LVKPYREKS 426 (570)
Q Consensus 418 ~Vk~A~~K~ 426 (570)
.|.++.+|+
T Consensus 284 ~V~~a~~k~ 292 (292)
T 2ghp_A 284 SVSLADKKP 292 (292)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999998873
No 177
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.45 E-value=2.6e-13 Score=118.55 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCC----CCCHHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeE
Q 008298 346 AGSRQIYLTFPAES----TFTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGAR 416 (570)
Q Consensus 346 ~~~rtIfVg~L~~~----~~TEedLr~~FsqFG~V~~VrI~~D-----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~ 416 (570)
.++++|+|.|+... +.++++|++.|++||+|++|+|+.+ ++||||||+|.+.++|.+|++.|||..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 56789999999321 2478999999999999999999975 56999999999999999999999999999999
Q ss_pred EEEeeccc
Q 008298 417 VLVKPYRE 424 (570)
Q Consensus 417 V~Vk~A~~ 424 (570)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 178
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.45 E-value=1.3e-13 Score=125.42 Aligned_cols=77 Identities=16% Similarity=0.320 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..++|++|.|.+
T Consensus 92 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 92 PGAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp TTTTCEEEECC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEEcC-CCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 44789999999 889999999999999999999999886 4689999999999999999999999999999999998
Q ss_pred cc
Q 008298 422 YR 423 (570)
Q Consensus 422 A~ 423 (570)
|.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 179
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.5e-13 Score=116.88 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=71.6
Q ss_pred CCCCCCEEEEcCCCCCCC-----------CHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEE
Q 008298 344 IVAGSRQIYLTFPAESTF-----------TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~-----------TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i 412 (570)
....+++|+|.|| .... ++++|+++|++||+|.+|.|+...+||||||+|.+.++|++|+..||+..|
T Consensus 11 ~~~~s~~l~l~Nl-~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 11 RMRHERVVIIKNM-FHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCSCCEEEEESS-CCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCceEEEEEcC-CCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3456899999999 3322 268999999999999999774336899999999999999999999999999
Q ss_pred cCeEEEEeecccccc
Q 008298 413 CGARVLVKPYREKSR 427 (570)
Q Consensus 413 ~GR~V~Vk~A~~K~k 427 (570)
+|+.|.|.++.++.+
T Consensus 90 ~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 90 GGRQITAQAWDGTTD 104 (112)
T ss_dssp TTEECEEEECCSCCC
T ss_pred CCcEEEEEEeCCCCC
Confidence 999999999987654
No 180
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.44 E-value=2.2e-13 Score=134.71 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCC-CCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAEST-FTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~-~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
....++|||++| ++. +|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|+..||+..|+|+.|.|.
T Consensus 181 ~~~~~~l~v~nl-p~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRL-PPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECC-CTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecC-CcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 356789999999 778 499999999999999999999985 679999999999999999999999999999999999
Q ss_pred eccccccchh
Q 008298 421 PYREKSRLVD 430 (570)
Q Consensus 421 ~A~~K~k~~~ 430 (570)
++.++.....
T Consensus 260 ~a~~~~~~~~ 269 (284)
T 3smz_A 260 FCAPGPPGRS 269 (284)
T ss_dssp ECCSSSCHHH
T ss_pred EecCCCcccc
Confidence 9988876443
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.44 E-value=3.2e-13 Score=133.44 Aligned_cols=82 Identities=16% Similarity=0.243 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHH----HHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVS----NYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr----~~FsqFG~V~~VrI~~D-~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
....++|||+|| ++++|+++|+ ++|++||.|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 6 ~~~~~~l~V~nl-p~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNL-NEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 356889999999 9999999977 89999999999999874 78999999999999999999999999999999999
Q ss_pred eecccccc
Q 008298 420 KPYREKSR 427 (570)
Q Consensus 420 k~A~~K~k 427 (570)
.+++.+..
T Consensus 85 ~~a~~~~~ 92 (282)
T 3pgw_A 85 QYAKTDSD 92 (282)
T ss_pred EEeccCcc
Confidence 99976653
No 182
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.43 E-value=2.7e-13 Score=127.69 Aligned_cols=80 Identities=18% Similarity=0.352 Sum_probs=73.4
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
.++|||++| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+++..|+|+.|.|.++.
T Consensus 28 ~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 28 MSRVYVGSI-YYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HTEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred CCEEEEECC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 579999999 999999999999999999999999886 589999999999999999999999999999999999987
Q ss_pred ccccc
Q 008298 424 EKSRL 428 (570)
Q Consensus 424 ~K~k~ 428 (570)
.+...
T Consensus 107 ~~~~~ 111 (216)
T 2qfj_A 107 NIGQA 111 (216)
T ss_dssp CCGGG
T ss_pred Ccccc
Confidence 76543
No 183
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.43 E-value=3.2e-13 Score=129.42 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=69.3
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
.++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.+ ++.++|+.|.|.++.+
T Consensus 109 ~~~l~V~nL-p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECC-CTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCC-CCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 479999999 899999999999999999999999985 67999999999999999999885 4699999999998765
No 184
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.41 E-value=2.9e-13 Score=122.92 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=70.6
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc------CCCceEEEEECCHHHHHHHHHhCCCeEEc---CeEE
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVC---GARV 417 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D------~sRGFGFVtF~~~e~A~~Al~~mng~~i~---GR~V 417 (570)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+++..+. ++.+
T Consensus 2 ~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQV-PRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 4689999999 999999999999999999999999986 47899999999999999999999997776 6788
Q ss_pred EEeeccccc
Q 008298 418 LVKPYREKS 426 (570)
Q Consensus 418 ~Vk~A~~K~ 426 (570)
.|.++..+.
T Consensus 81 ~~~~~~~~~ 89 (175)
T 3nmr_A 81 QMKPADSEK 89 (175)
T ss_dssp EEEECGGGC
T ss_pred EEccccccc
Confidence 888876543
No 185
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=3.4e-13 Score=117.14 Aligned_cols=79 Identities=13% Similarity=0.226 Sum_probs=70.1
Q ss_pred CCCCE-EEEcCCCCCCCCHHH----HHHHhhcC-CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 346 AGSRQ-IYLTFPAESTFTEQD----VSNYFSKF-GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 346 ~~~rt-IfVg~L~~~~~TEed----Lr~~FsqF-G~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
+++.| |||+|| ++.+++++ |+++|++| |+|.+| ..|||||+|.+.++|++|++.|++..+.||.|+|
T Consensus 6 ~p~~T~lYV~NL-~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNL-PANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESC-CTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCC-CCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 45566 999999 99999988 55899999 599998 3499999999999999999999999999999999
Q ss_pred eeccccccchhh
Q 008298 420 KPYREKSRLVDR 431 (570)
Q Consensus 420 k~A~~K~k~~~r 431 (570)
.+|+.+.+....
T Consensus 79 ~~A~~~sd~~~~ 90 (96)
T 2diu_A 79 SFTPKNRELCET 90 (96)
T ss_dssp ESSCCSCCCCCC
T ss_pred EecCCCcceeEe
Confidence 999998776543
No 186
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.40 E-value=3.4e-13 Score=133.29 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhC-CCeEEc---CeEEEE
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKG-NPHFVC---GARVLV 419 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~m-ng~~i~---GR~V~V 419 (570)
..++|||++| ++.+|+++|+++|++||+|.+|+|+.| +++|||||+|.+.++|.+|+..| ++..+. |+.|.|
T Consensus 95 ~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNL-SPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCC-CCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 3579999999 899999999999999999999999986 67999999999999999999999 566665 999999
Q ss_pred eeccccc
Q 008298 420 KPYREKS 426 (570)
Q Consensus 420 k~A~~K~ 426 (570)
.++.+..
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9987653
No 187
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.40 E-value=3.8e-13 Score=121.74 Aligned_cols=77 Identities=25% Similarity=0.434 Sum_probs=70.6
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
.+++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++. ++.++|+.|.|.++
T Consensus 2 ~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGL-NWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSC-CTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 3579999999 999999999999999999999999985 6799999999999999999996 58999999999998
Q ss_pred cccc
Q 008298 423 REKS 426 (570)
Q Consensus 423 ~~K~ 426 (570)
.++.
T Consensus 79 ~~~~ 82 (167)
T 2cjk_A 79 IPRD 82 (167)
T ss_dssp CCHH
T ss_pred cchh
Confidence 7653
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.40 E-value=8.5e-13 Score=130.42 Aligned_cols=78 Identities=14% Similarity=0.094 Sum_probs=72.5
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEc-CeEEEEeec
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 422 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~-GR~V~Vk~A 422 (570)
..+..++|||+|| ++.+|+++|+++|++||.|++|+|+.++ +|||||+|.+.++|.+|++.||+..|+ |+.|+|.++
T Consensus 203 ~~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 203 ENPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCCCCEEEEeCC-CCcCCHHHHHHHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 3456789999999 8999999999999999999999999753 699999999999999999999999999 999999998
Q ss_pred c
Q 008298 423 R 423 (570)
Q Consensus 423 ~ 423 (570)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 6
No 189
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.35 E-value=9.3e-13 Score=120.67 Aligned_cols=74 Identities=12% Similarity=0.204 Sum_probs=65.5
Q ss_pred CEEEEcCC---CCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECC----HHH----HHHHHH--hCCCeE
Q 008298 349 RQIYLTFP---AESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVF----AET----VKQILA--KGNPHF 411 (570)
Q Consensus 349 rtIfVg~L---~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~----~e~----A~~Al~--~mng~~ 411 (570)
.+||||+| .++.++|++|+++|++||+|.+|+++.| ++||||||+|.+ ++. |.+|+. .+|+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 4578999999999999999999999998 789999999996 333 888988 789999
Q ss_pred EcCeEEEEeec
Q 008298 412 VCGARVLVKPY 422 (570)
Q Consensus 412 i~GR~V~Vk~A 422 (570)
|+||.|+|..-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999964
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.35 E-value=2.4e-12 Score=127.29 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
....++|||+|| ++++|+++|+++|++||.|.+|+|.. +||||||+|.+.++|.+|+..+++..|+|+.|.|.++.+
T Consensus 19 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 19 YTQRCRLFVGNL-PTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SCGGGEEEEESC-CTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 345679999999 99999999999999999999999987 799999999999999999999999999999999999875
Q ss_pred c
Q 008298 425 K 425 (570)
Q Consensus 425 K 425 (570)
.
T Consensus 96 ~ 96 (261)
T 3sde_A 96 G 96 (261)
T ss_dssp S
T ss_pred C
Confidence 3
No 191
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.35 E-value=2.1e-12 Score=119.93 Aligned_cols=77 Identities=21% Similarity=0.335 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcC----C-------CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKF----G-------PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqF----G-------~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~G 414 (570)
...++|||+|| ++++|+++|+++|++| | .|.++++.. +||||||+|.+.++|++|+ .+++..|+|
T Consensus 2 ~~~~~l~V~nL-p~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~--~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESC-CTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET--TTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCC-CCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC--CCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 35689999999 9999999999999999 6 788887765 8999999999999999999 889999999
Q ss_pred eEEEEeeccccc
Q 008298 415 ARVLVKPYREKS 426 (570)
Q Consensus 415 R~V~Vk~A~~K~ 426 (570)
+.|.|.++..+.
T Consensus 78 ~~i~v~~~~~~~ 89 (198)
T 2yh0_A 78 QSLKIRRPHDYQ 89 (198)
T ss_dssp EEEEEECCCCCC
T ss_pred ceEEEeCCCCCC
Confidence 999999987654
No 192
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.33 E-value=2.7e-12 Score=116.66 Aligned_cols=76 Identities=20% Similarity=0.346 Sum_probs=69.8
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcC----C-------CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCe
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKF----G-------PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqF----G-------~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR 415 (570)
..++|||+|| ++++|+++|+++|++| | .|.++++.. +||||||+|.+.++|++|+ .++++.++|+
T Consensus 3 ~~~~l~V~nL-p~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred cccEEEEcCC-CcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecCc
Confidence 4689999999 9999999999999999 7 888998876 8999999999999999999 8899999999
Q ss_pred EEEEeeccccc
Q 008298 416 RVLVKPYREKS 426 (570)
Q Consensus 416 ~V~Vk~A~~K~ 426 (570)
.|.|.++....
T Consensus 79 ~i~v~~~~~~~ 89 (172)
T 2g4b_A 79 SLKIRRPHDYQ 89 (172)
T ss_dssp ECEEECCSSCC
T ss_pred eeeecCCcccC
Confidence 99999876543
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.33 E-value=1.1e-12 Score=120.02 Aligned_cols=82 Identities=15% Similarity=0.187 Sum_probs=70.5
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec---cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 344 ~~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~---D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
.....++|||+|| ++++|+++|+++|++||.|..+.|.. +++||||||+|.+.++|++|++ |++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNL-NPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECC-CTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3456789999999 99999999999999999877632222 3789999999999999999995 89999999999999
Q ss_pred ecccccc
Q 008298 421 PYREKSR 427 (570)
Q Consensus 421 ~A~~K~k 427 (570)
++.++..
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9987643
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.32 E-value=2.7e-12 Score=120.18 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEc-CeEEEEeec
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 422 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG-~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~-GR~V~Vk~A 422 (570)
.++.++|||++| ++.+|+++|+++|++|| +|.+|+|+.+ .+|||||+|.+.++|.+|++.||+..++ |+.|+|.++
T Consensus 117 ~~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 117 FPPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCCCEEEECCC-CTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CCCccEEEEeCC-CCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 356889999999 88999999999999999 9999999653 6899999999999999999999999999 999999998
Q ss_pred ccc
Q 008298 423 REK 425 (570)
Q Consensus 423 ~~K 425 (570)
+++
T Consensus 195 ~~~ 197 (198)
T 1qm9_A 195 KST 197 (198)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.30 E-value=4e-12 Score=123.11 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEc-CeEEEEeec
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 422 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG-~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~-GR~V~Vk~A 422 (570)
.++.++|||+|| ++.+++++|+++|++|| +|.+|+|+. +++|||||+|.+.++|.+|++.|++..++ |+.|+|.++
T Consensus 148 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 148 FPPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQ-KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp CCSCSEEEEECC-CTTCCHHHHHHHHHTTSCCEEEEEECS-SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCC-CccCCHHHHHHHHHHcCCCeeEEEEEE-CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 355789999999 88999999999999999 999999955 26899999999999999999999999999 999999998
Q ss_pred ccc
Q 008298 423 REK 425 (570)
Q Consensus 423 ~~K 425 (570)
+++
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 764
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.29 E-value=5.8e-12 Score=109.87 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCC-CC--------CHHHHHHHhhcCCCeeEEEeecc------CCCceEEEEECCHHHHHHHHHhCCCe
Q 008298 346 AGSRQIYLTFPAES-TF--------TEQDVSNYFSKFGPVQDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPH 410 (570)
Q Consensus 346 ~~~rtIfVg~L~~~-~~--------TEedLr~~FsqFG~V~~VrI~~D------~sRGFGFVtF~~~e~A~~Al~~mng~ 410 (570)
.+++.|.|.|+-+. .+ .+++|++.|++||+|++|+|+++ +++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46788999987321 22 34799999999999999999986 36899999999999999999999999
Q ss_pred EEcCeEEEEeecccc
Q 008298 411 FVCGARVLVKPYREK 425 (570)
Q Consensus 411 ~i~GR~V~Vk~A~~K 425 (570)
.++||.|.|.++.+.
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999997654
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=1e-12 Score=114.31 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=60.2
Q ss_pred EcCCCCCCCCHHHHHHHh------------hcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEE
Q 008298 353 LTFPAESTFTEQDVSNYF------------SKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417 (570)
Q Consensus 353 Vg~L~~~~~TEedLr~~F------------sqFG~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V 417 (570)
+++| ++.+++++|+++| ++||+|++|+|+.+ ++||||||+|.+.++|++|+..|||..++||.|
T Consensus 20 ~~~l-~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGL-RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCc-ccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 4556 5667777777666 99999999999986 579999999999999999999999999999999
Q ss_pred EEeec
Q 008298 418 LVKPY 422 (570)
Q Consensus 418 ~Vk~A 422 (570)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 198
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.28 E-value=8e-12 Score=123.55 Aligned_cols=80 Identities=10% Similarity=0.143 Sum_probs=74.2
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEee
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~ 421 (570)
+..++|||++| ++.+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.+++..++|+.|.|.+
T Consensus 93 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 93 PTDALLCVANL-PPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCSCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEcCC-CCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35579999999 999999999999999999999999875 5799999999999999999999999999999999999
Q ss_pred ccccc
Q 008298 422 YREKS 426 (570)
Q Consensus 422 A~~K~ 426 (570)
+.++.
T Consensus 172 a~~~~ 176 (284)
T 3smz_A 172 TDAGQ 176 (284)
T ss_dssp CCGGG
T ss_pred CCCCC
Confidence 97654
No 199
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.2e-11 Score=105.96 Aligned_cols=79 Identities=10% Similarity=0.229 Sum_probs=65.7
Q ss_pred CCCCEEEEcCCCC------CCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 008298 346 AGSRQIYLTFPAE------STFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (570)
Q Consensus 346 ~~~rtIfVg~L~~------~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~V 419 (570)
...++|-|..... ..+||++|+++|++||+|++|+|+. ++||||||+|.+.++|+.|++.+++ +.|+.|+|
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 3355666655421 4589999999999999999999984 6999999999999999999998544 68999999
Q ss_pred eecccccc
Q 008298 420 KPYREKSR 427 (570)
Q Consensus 420 k~A~~K~k 427 (570)
.|++++..
T Consensus 85 ~~a~~~~~ 92 (100)
T 2d9o_A 85 SWLEGQPQ 92 (100)
T ss_dssp ECSSCCCC
T ss_pred EEccCCCC
Confidence 99987754
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.25 E-value=1e-11 Score=123.27 Aligned_cols=80 Identities=14% Similarity=0.271 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG-~V~~VrI~~D---~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
..++|||++| ++.+|+++|+++|++|| +|.+|+|+.+ +++|||||+|.+.++|.+|++.|++..|+|+.|.|.++
T Consensus 116 ~~~~l~v~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNF-PPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECC-CTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECC-CCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4789999999 99999999999999999 9999999986 58999999999999999999999999999999999999
Q ss_pred ccccc
Q 008298 423 REKSR 427 (570)
Q Consensus 423 ~~K~k 427 (570)
.++.+
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 87654
No 201
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.25 E-value=6.3e-12 Score=121.24 Aligned_cols=77 Identities=12% Similarity=0.049 Sum_probs=68.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHHhhcCCCe--eEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCe----E
Q 008298 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPV--QDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGA----R 416 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEedLr~~FsqFG~V--~~VrI~~D--~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR----~ 416 (570)
.+++++|||+|| ++++|+++|+++|++||.| .+|+|+.+ +++|||||+|.+.++|.+|+..||+..|.|+ .
T Consensus 120 ~~p~~~l~v~NL-p~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 120 QHPSNVLHFFNA-PLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCCSEEEEEEE-CTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCCcceEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 356789999999 9999999999999999999 89999886 4579999999999999999999999999998 4
Q ss_pred EEEeec
Q 008298 417 VLVKPY 422 (570)
Q Consensus 417 V~Vk~A 422 (570)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 566554
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.25 E-value=1.6e-11 Score=128.42 Aligned_cols=79 Identities=13% Similarity=0.203 Sum_probs=68.4
Q ss_pred CCCCCCCEEEEcCCC-CCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEc---Ce--E
Q 008298 343 GIVAGSRQIYLTFPA-ESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC---GA--R 416 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~-~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~---GR--~ 416 (570)
....++++|||||+. ++.+||++|+++|++||+|++|+|+. +||||||+|.+.++|++|++.|||..+. |+ .
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 345778999999841 68999999999999999999999987 8999999999999999999999999883 55 4
Q ss_pred EEEeecc
Q 008298 417 VLVKPYR 423 (570)
Q Consensus 417 V~Vk~A~ 423 (570)
+.|.+++
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 6667664
No 203
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.25 E-value=1.4e-11 Score=109.52 Aligned_cols=80 Identities=10% Similarity=0.011 Sum_probs=68.3
Q ss_pred CCCCEEEEcCCCCCC---------CCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeE
Q 008298 346 AGSRQIYLTFPAEST---------FTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGAR 416 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~---------~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~ 416 (570)
.+++.|.+.|+-... -.+++|++.|++||+|++|.|+.+..+|||||+|.+.++|.+|++.|||..++||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 456778888873221 12468999999999999999988878999999999999999999999999999999
Q ss_pred EEEeecccc
Q 008298 417 VLVKPYREK 425 (570)
Q Consensus 417 V~Vk~A~~K 425 (570)
|.|.++...
T Consensus 85 i~v~~~~~~ 93 (114)
T 3s6e_A 85 ITAAYVPLP 93 (114)
T ss_dssp CEEEEECHH
T ss_pred EEEEEEcHH
Confidence 999998644
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.23 E-value=1.2e-11 Score=110.47 Aligned_cols=79 Identities=23% Similarity=0.280 Sum_probs=68.5
Q ss_pred CCCCEEEEcCCCCC----CCCHHHHHHHhhcCCCeeEEEeeccC--------CCceEEEEECCHHHHHHHHHhCCCeEEc
Q 008298 346 AGSRQIYLTFPAES----TFTEQDVSNYFSKFGPVQDVRIPCQQ--------KRMFGFVTFVFAETVKQILAKGNPHFVC 413 (570)
Q Consensus 346 ~~~rtIfVg~L~~~----~~TEedLr~~FsqFG~V~~VrI~~D~--------sRGFGFVtF~~~e~A~~Al~~mng~~i~ 413 (570)
++++.|+|.|+-.. +-.+++|++.|++||+|++|+|+.++ ++|||||+|.+.++|.+|+..|||..++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 35788999998321 22479999999999999999999862 4699999999999999999999999999
Q ss_pred CeEEEEeeccc
Q 008298 414 GARVLVKPYRE 424 (570)
Q Consensus 414 GR~V~Vk~A~~ 424 (570)
||.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999764
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.5e-09 Score=93.45 Aligned_cols=78 Identities=14% Similarity=0.233 Sum_probs=66.2
Q ss_pred CCCCCCCEEEEcCCCC---C-CCCH---HHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCe
Q 008298 343 GIVAGSRQIYLTFPAE---S-TFTE---QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (570)
Q Consensus 343 ~~~~~~rtIfVg~L~~---~-~~TE---edLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR 415 (570)
..+|+.-||+|.-.++ . .+.+ .+|.+.|++||+|..|||+.|+ +||+|.+.++|.+|++ ||+..++||
T Consensus 2 ~~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 2 SSGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CCCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 5678888999988731 1 2342 6799999999999999998854 8999999999999998 999999999
Q ss_pred EEEEeecccc
Q 008298 416 RVLVKPYREK 425 (570)
Q Consensus 416 ~V~Vk~A~~K 425 (570)
.|+|..+++.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998753
No 206
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=2.4e-08 Score=86.64 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=65.1
Q ss_pred CCCCCCCCEEEEcCCCCC------CCCH---HHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEE
Q 008298 342 GGIVAGSRQIYLTFPAES------TFTE---QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (570)
Q Consensus 342 g~~~~~~rtIfVg~L~~~------~~TE---edLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i 412 (570)
...+|+.-||+|.-+ ++ .+.+ .+|.+.|++||+|..|||+.|+ +||+|.+.+.|.+|++ |++..+
T Consensus 9 ~~~GPpD~Tv~V~~~-~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQ-SPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCCCCTTCEEEEEES-SCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEE
T ss_pred eecCCCCCeEEEEec-CCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeee
Confidence 456788999999988 42 2332 5689999999999999999975 9999999999999999 899999
Q ss_pred cCeEEEEeec
Q 008298 413 CGARVLVKPY 422 (570)
Q Consensus 413 ~GR~V~Vk~A 422 (570)
+||.|+|+..
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 9999999874
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=9e-08 Score=86.36 Aligned_cols=77 Identities=10% Similarity=-0.001 Sum_probs=67.2
Q ss_pred CCCCCEEEEcCCCCCC-CCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECC-HHHHHHHHHhC--CCeEEcCeEEEEe
Q 008298 345 VAGSRQIYLTFPAEST-FTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVF-AETVKQILAKG--NPHFVCGARVLVK 420 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~-~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~-~e~A~~Al~~m--ng~~i~GR~V~Vk 420 (570)
-+...-|||++| ++. +++++|+++|++||+|..|.++.| +-.|||.|.+ +++|..|+..+ ++..|+|..+++.
T Consensus 15 ~~~G~il~v~~l-~~~~~sredLke~F~~~G~V~~Vd~~~g--~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 15 EKIGCLLKFSGD-LDDQTCREDLHILFSNHGEIKWIDFVRG--AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCCEEEEEES-CCSSCCHHHHHHHTCSSCCEEEEECCTT--CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred ccCCeEEEEecC-CCCcCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 456678999999 888 999999999999999999999985 4479999999 89999999998 4788999888887
Q ss_pred eccc
Q 008298 421 PYRE 424 (570)
Q Consensus 421 ~A~~ 424 (570)
...-
T Consensus 92 vL~G 95 (121)
T 1owx_A 92 VLEG 95 (121)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 6543
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.59 E-value=3.9e-08 Score=94.57 Aligned_cols=64 Identities=25% Similarity=0.334 Sum_probs=58.8
Q ss_pred CCHHHHHHHhhcCCCeeEEEeecc--------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeeccc
Q 008298 361 FTEQDVSNYFSKFGPVQDVRIPCQ--------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (570)
Q Consensus 361 ~TEedLr~~FsqFG~V~~VrI~~D--------~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~~ 424 (570)
-.+++|++.|++||+|.+|.|+.+ +++||+||+|.+.++|.+|++.|||..++||.|.|..+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 357899999999999999999852 5789999999999999999999999999999999999754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00087 Score=59.75 Aligned_cols=75 Identities=8% Similarity=0.027 Sum_probs=68.1
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcC-----CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeec
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKF-----GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqF-----G~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A 422 (570)
.++|=+-+| +.+++...|+.+...+ |.|++|.+.. ..|=|+|.|.+...|-+|.-.++|..|+||+|+|.-.
T Consensus 21 ~rtiaL~~i-pDtvndarIr~lve~~~~i~~g~i~KI~L~p--DH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 21 ETLICLFPL-SDKVSPSLICQFLQEEIHINEKDIRKILLVS--DFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TSCEEEECC-CTTCCHHHHHHHHHHHTCCCTTTCSEEEEET--TTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CcEEEEecC-CCCCCHHHHHHHHhhhhccCccceeEEEEec--CCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 578999999 8899999999999999 9999999988 4667999999999999999888999999999999876
Q ss_pred ccc
Q 008298 423 REK 425 (570)
Q Consensus 423 ~~K 425 (570)
.+-
T Consensus 98 ~eL 100 (117)
T 2l9w_A 98 NDM 100 (117)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.14 E-value=0.0022 Score=56.42 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=65.5
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHhhc-----CCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEe
Q 008298 346 AGSRQIYLTFPAESTFTEQDVSNYFSK-----FGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (570)
Q Consensus 346 ~~~rtIfVg~L~~~~~TEedLr~~Fsq-----FG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk 420 (570)
...++|.|.+| +..+.++.|+-||+. =|+|++|+... +-|+|+|.+++.|++.|+. ..|.|+|-.|.|.
T Consensus 6 ~~~~~I~V~~l-Pp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGL-PPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESC-CTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred cCccEEEEECC-CCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 34679999999 778999999999987 27999987743 6799999999999999998 7899999999999
Q ss_pred eccccc
Q 008298 421 PYREKS 426 (570)
Q Consensus 421 ~A~~K~ 426 (570)
++.++.
T Consensus 80 P~~~~~ 85 (104)
T 2dhx_A 80 PAPPRA 85 (104)
T ss_dssp ECCCCC
T ss_pred cCCCCC
Confidence 987764
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.38 E-value=0.012 Score=52.92 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=61.4
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC-eEEEEeecccc
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG-ARVLVKPYREK 425 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~G-R~V~Vk~A~~K 425 (570)
..+.|.|-+. +.. ....|-.+|++||.|.+...+. ...+-.|+|.+..+|++||.. |+..|+| -.|-|++...+
T Consensus 23 ~~~wVtVFGF-p~~-~~~~VL~~F~~~G~Iv~~~~~~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~d~ 97 (119)
T 1wwh_A 23 DDTWVTVFGF-PQA-SASYILLQFAQYGNILKHVMSN--TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCIDK 97 (119)
T ss_dssp GGGEEEEECC-CGG-GHHHHHHHHHTTSCEEEEEECS--SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECCCH
T ss_pred CCCEEEEECC-CHH-HHHHHHHHHHhhCcEEEeccCC--CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECCCH
Confidence 3567888777 333 4677889999999999998743 678999999999999999999 9999985 78888887654
Q ss_pred c
Q 008298 426 S 426 (570)
Q Consensus 426 ~ 426 (570)
.
T Consensus 98 ~ 98 (119)
T 1wwh_A 98 N 98 (119)
T ss_dssp H
T ss_pred H
Confidence 3
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.25 E-value=0.0064 Score=53.50 Aligned_cols=76 Identities=8% Similarity=0.008 Sum_probs=63.3
Q ss_pred CCEEEEcCCCCCCCCH----HHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 348 SRQIYLTFPAESTFTE----QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TE----edLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
.++|+|.+|+..-++. +.++++|.+|+++......+ +-.=..|.|.++++|.+|-..|++..++|++++|..++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk--SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK--SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET--TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC--cceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 4689999994433343 46789999999999887776 54457999999999999999999999999999999998
Q ss_pred cc
Q 008298 424 EK 425 (570)
Q Consensus 424 ~K 425 (570)
+-
T Consensus 83 ~~ 84 (104)
T 1wey_A 83 TL 84 (104)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 213
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.15 E-value=0.0024 Score=52.76 Aligned_cols=25 Identities=32% Similarity=0.906 Sum_probs=22.1
Q ss_pred CCCccccccccccCCCCCCCccccC
Q 008298 190 FPVKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 190 ~~~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
..-.+|.||.+|.|++|.+|+|.|.
T Consensus 8 ~k~~~C~~fl~G~C~~G~~C~fsH~ 32 (77)
T 2d9n_A 8 EKTVVCKHWLRGLCKKGDQCEFLHE 32 (77)
T ss_dssp CTTSBCHHHHTTCCSCTTSSSSBCS
T ss_pred CcceeCHhHccCcCCCCCCCCCccc
Confidence 3457899999999999999999997
No 214
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=95.87 E-value=0.0017 Score=53.24 Aligned_cols=26 Identities=31% Similarity=0.861 Sum_probs=23.3
Q ss_pred CCCCccccccccccCCCCCCCccccC
Q 008298 189 EFPVKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 189 ~~~~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
.....+|.||.+|.|++|.+|+|.|.
T Consensus 13 ~~k~~vCk~fl~G~C~~G~~C~fsH~ 38 (72)
T 2rhk_C 13 GEKTVVCKHWLRGLCKKGDQCEFLHE 38 (72)
T ss_dssp CCCCSBCHHHHTTCCCCGGGSSSBCS
T ss_pred CCcCeeCHHHhcCCCCCCCCCCCccc
Confidence 34567999999999999999999998
No 215
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=95.81 E-value=0.0061 Score=48.77 Aligned_cols=51 Identities=27% Similarity=0.412 Sum_probs=39.3
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHh
Q 008298 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKL 61 (570)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~emirla~gpd~~~~~~i~~ak~~l 61 (570)
..+|.+|++++|++|.||.|+||= .+..|++.|=-. +..|++-|..|-.-|
T Consensus 7 e~Lyp~V~~~~p~~A~KITGMLLE--~d~~ell~ll~~-~e~L~~kv~EA~~vl 57 (61)
T 1i2t_A 7 ERLYPRVQAMQPAFASKITGMLLE--LSPAQLLLLLAS-EDSLRARVDEAMELI 57 (61)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHTT--SCHHHHHHHHHC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccchhhhhcc--CCHHHHHHHHcC-HHHHHHHHHHHHHHH
Confidence 468999999999999999999985 455678877554 455677777776543
No 216
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=95.45 E-value=0.0052 Score=53.21 Aligned_cols=23 Identities=39% Similarity=1.211 Sum_probs=15.5
Q ss_pred CccccccccccCCCCCCCccccC
Q 008298 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 192 ~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
-.+|.||.+|.|++|.+|+|.|.
T Consensus 13 ~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 13 RELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CccCcccccCcCCCCCCCCCCCC
Confidence 44677776677777777777775
No 217
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.39 E-value=0.0041 Score=50.89 Aligned_cols=23 Identities=35% Similarity=1.067 Sum_probs=22.0
Q ss_pred CccccccccccCCCCCCCccccC
Q 008298 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 192 ~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
.+.|.+|.+|.|+.|+.|.|.||
T Consensus 20 ~~LC~~~~~G~C~~G~~C~FAHG 42 (69)
T 2d9m_A 20 FSICDRYMNGTCPEGNSCKFAHG 42 (69)
T ss_dssp CSBCHHHHHSCCSSCSSCSSBSS
T ss_pred cccCcccCcCCCCCCCccCCcCC
Confidence 39999999999999999999999
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.37 E-value=0.017 Score=52.71 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=54.4
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeE-EEeecc-----------------CCCceEEEEECCHHHHHHHHHhCCCeE
Q 008298 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQD-VRIPCQ-----------------QKRMFGFVTFVFAETVKQILAKGNPHF 411 (570)
Q Consensus 350 tIfVg~L~~~~~TEedLr~~FsqFG~V~~-VrI~~D-----------------~sRGFGFVtF~~~e~A~~Al~~mng~~ 411 (570)
.|.|-+- + .-....+=++|++||.|.+ +.+..+ ....+--|+|++..+|.+||.. ||..
T Consensus 9 ~VtVFGF-p-~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 9 AILVFGY-P-ETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp EEEEECC-C-GGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred EEEEEec-C-HHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 3445444 2 2356778899999999987 322210 1356779999999999999999 9999
Q ss_pred EcCeEEEEeeccc
Q 008298 412 VCGARVLVKPYRE 424 (570)
Q Consensus 412 i~GR~V~Vk~A~~ 424 (570)
|+|..|-|.++.+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999999999953
No 219
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.23 E-value=0.0052 Score=49.88 Aligned_cols=23 Identities=39% Similarity=1.092 Sum_probs=20.9
Q ss_pred CccccccccccCCCCCC-CccccC
Q 008298 192 VKVCHYFNKGFCKHGNN-CRYFHG 214 (570)
Q Consensus 192 ~kpC~YFarG~Ck~G~~-Cry~Hg 214 (570)
..+|.+|.+|.|++|.+ |+|.|.
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~ 29 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHP 29 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCC
T ss_pred chhCHHHhcCCCCCCCCCCCCccC
Confidence 35899999999999995 999997
No 220
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=94.83 E-value=0.012 Score=49.94 Aligned_cols=52 Identities=25% Similarity=0.392 Sum_probs=40.9
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHhc
Q 008298 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKLG 62 (570)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~emirla~gpd~~~~~~i~~ak~~l~ 62 (570)
.-+|.+|++++|+.|.||.|+||= .+..|++.|=- .+.+|++-|..|-.-|.
T Consensus 29 E~LyplV~~~~p~~AgKITGMLLE--md~~ElL~Lle-~~e~L~~kV~EA~~vL~ 80 (85)
T 1nmr_A 29 ERLYNHIVAINPAAAAKVTGMLLE--MDNGEILNLLD-TPGLLDAKVQEALEVLN 80 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCSC--THHHHHHTTCC-THHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCccccchhhHhHhc--CCHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence 458999999999999999999985 45557777744 55667888888876654
No 221
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=94.78 E-value=0.019 Score=49.51 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=41.0
Q ss_pred HHHHHhhhh--cCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHhc
Q 008298 8 KAVYNRIQK--LEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKLG 62 (570)
Q Consensus 8 ~~v~~riq~--~~pe~a~ki~g~ll~qd~~e~emirla~gpd~~~~~~i~~ak~~l~ 62 (570)
.-+|.+|++ ++||.|.||.|+||= .+..|++.|=- .+.+|++-|..|-.-|.
T Consensus 26 E~LyplV~~~~~~pelAgKITGMLLE--md~~ElL~LLe-s~e~L~~kV~EA~~vL~ 79 (92)
T 1ifw_A 26 EQLYKKVSAKTSNEEAAGKITGMILD--LPPQEVFPLLE-SDELFEQHYKEASAAYE 79 (92)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHTT--SCHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCccccchhhHhHhc--CCHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence 458999999 999999999999984 56677888754 45567778887766554
No 222
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=94.73 E-value=0.0086 Score=48.59 Aligned_cols=24 Identities=42% Similarity=0.913 Sum_probs=21.8
Q ss_pred CCCccccccccccCCCCCCCccccC
Q 008298 190 FPVKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 190 ~~~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
....+|.+|.+|.|.+| +|+|+|.
T Consensus 40 ~~~~vC~~flkG~C~r~-~C~y~H~ 63 (70)
T 3d2q_A 40 NTVTVCMDYIKGRCSRE-KCKYFHP 63 (70)
T ss_dssp TEEEBCHHHHTTCCCCT-TCCSBCC
T ss_pred CcceeccccCcCCCCCC-CcCeeCC
Confidence 34778999999999999 9999997
No 223
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.72 E-value=0.016 Score=47.12 Aligned_cols=26 Identities=27% Similarity=0.962 Sum_probs=22.8
Q ss_pred CCCCccccccc-cccCCCCCCCccccC
Q 008298 189 EFPVKVCHYFN-KGFCKHGNNCRYFHG 214 (570)
Q Consensus 189 ~~~~kpC~YFa-rG~Ck~G~~Cry~Hg 214 (570)
...-++|.||. .|.|+.|.+|+|.|+
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~ 35 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHG 35 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSS
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCC
Confidence 44578999995 799999999999998
No 224
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=94.61 E-value=0.01 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.769 Sum_probs=21.4
Q ss_pred Ccccccc-ccccCCCCCCCccccC
Q 008298 192 VKVCHYF-NKGFCKHGNNCRYFHG 214 (570)
Q Consensus 192 ~kpC~YF-arG~Ck~G~~Cry~Hg 214 (570)
..+|.|| .+|.|++|..|+|.|.
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~ 59 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHD 59 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCC
Confidence 6799999 5999999999999998
No 225
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=94.38 E-value=0.014 Score=49.10 Aligned_cols=23 Identities=30% Similarity=0.951 Sum_probs=21.0
Q ss_pred CccccccccccCCCCC-CCccccC
Q 008298 192 VKVCHYFNKGFCKHGN-NCRYFHG 214 (570)
Q Consensus 192 ~kpC~YFarG~Ck~G~-~Cry~Hg 214 (570)
..+|.+|.||.|++|. +|+|.|-
T Consensus 9 ~~VCr~FlrG~C~r~d~~C~f~H~ 32 (83)
T 3d2n_A 9 LEVCREFQRGTCSRPDTECKFAHP 32 (83)
T ss_dssp EEBCTTGGGTCCCSCTTTCSSBCC
T ss_pred chhcHHHhcCCCCCCCCCCCCcCC
Confidence 4589999999999995 9999997
No 226
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.29 E-value=0.0077 Score=48.99 Aligned_cols=24 Identities=29% Similarity=0.898 Sum_probs=0.0
Q ss_pred CCcccc-ccccccCCCCCCCccccC
Q 008298 191 PVKVCH-YFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 191 ~~kpC~-YFarG~Ck~G~~Cry~Hg 214 (570)
..++|. |+..|+|++|..|+|.|+
T Consensus 49 k~~~C~~f~~~G~C~~G~~C~f~H~ 73 (77)
T 1m9o_A 49 KTELCHKFKLQGRCPYGSRCHFIHN 73 (77)
T ss_dssp -------------------------
T ss_pred cCCcccchhhCcCCCCcCcCCCCCC
Confidence 357997 556899999999999998
No 227
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.90 E-value=0.014 Score=50.53 Aligned_cols=25 Identities=40% Similarity=0.893 Sum_probs=22.5
Q ss_pred CCCCccccccccccCCCCCCCccccC
Q 008298 189 EFPVKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 189 ~~~~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
......|.+|.||.|.+| +|+|+|.
T Consensus 53 ~~~~~vC~~flkG~C~r~-~C~y~H~ 77 (98)
T 2e5s_A 53 DNTVTVCMDYIKGRCMRE-KCKYFHP 77 (98)
T ss_dssp TCEEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred CCccccchhhccCCCCCC-CcCccCC
Confidence 345789999999999999 9999998
No 228
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=93.50 E-value=0.034 Score=51.47 Aligned_cols=52 Identities=27% Similarity=0.381 Sum_probs=41.8
Q ss_pred HHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHhcC
Q 008298 9 AVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKLGL 63 (570)
Q Consensus 9 ~v~~riq~~~pe~a~ki~g~ll~qd~~e~emirla~gpd~~~~~~i~~ak~~l~~ 63 (570)
.+|-+|++++||+|.||.|+||= .+..|++.|=-.| .+|++.|.+|-.-|--
T Consensus 73 ~LyplV~~~~p~~A~KITGMLLE--md~~ElL~LLes~-e~L~~kV~EA~~vL~~ 124 (144)
T 1g9l_A 73 RLFPLIQAMHPTLAGKITGMLLE--IDNSELLHMLESP-ESLRSKVDEAVAVLQA 124 (144)
T ss_dssp SSHHHHHHHTTSCCSSHHHHTTT--SSSHHHHHHHHCT-THHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCccccchhhhhhcc--CCHHHHHHHHcCH-HHHHHHHHHHHHHHHH
Confidence 36899999999999999999995 4556788885554 5678888888887755
No 229
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=93.35 E-value=0.024 Score=48.10 Aligned_cols=52 Identities=27% Similarity=0.438 Sum_probs=40.9
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHhc
Q 008298 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKLG 62 (570)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~emirla~gpd~~~~~~i~~ak~~l~ 62 (570)
.-+|.+|++++||+|.||.|+||=- +..|++.|=-.|| .|++-|..|-.-|.
T Consensus 28 E~LyplV~~~~p~~AgKITGMLLEm--d~~Ell~Lles~e-~L~~kv~EA~~vL~ 79 (85)
T 2dyd_A 28 ENLYPLVDQLEHDQAAKVTGMLLEM--DQTEVLHLLESPD-ALKAKVAEAMEVLR 79 (85)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHH--CHHHHHHHTTCSH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccccchhhhhhhcC--CHHHHHHHHcCHH-HHHHHHHHHHHHHH
Confidence 4689999999999999999999964 5666888855555 56777888776654
No 230
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.32 E-value=0.032 Score=60.49 Aligned_cols=56 Identities=18% Similarity=0.387 Sum_probs=41.5
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHh
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAK 406 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~ 406 (570)
.|.|||.. +...++.+|.+||++||+|.++.+-.+ ..-|+.|+|.+.+++..+++.
T Consensus 53 ~rsv~v~~--~~~~~~~~l~~y~~~~g~i~~~~~~~~-~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIHC--PEKISENKFLKYLSQFGPINNHFFYES-FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEEE--CCC---CHHHHHHGGGSCCCCEEEECS-SSEEEEEECC---CCHHHHSS
T ss_pred cceEEEEc--CCCCCHHHHHHHHHhcCCcceEEEEcc-CCeEEEEEeCCHHHHHHHHhc
Confidence 46899985 577999999999999999999976552 446999999999999987665
No 231
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.15 E-value=0.035 Score=49.90 Aligned_cols=34 Identities=9% Similarity=0.124 Sum_probs=28.6
Q ss_pred CCcccCCCCchhhhhhhhhhhcCCCCCcCcccccc
Q 008298 514 APAEQGDFPSAERFNYLLDVLNNGSTSEDQVSHIS 548 (570)
Q Consensus 514 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 548 (570)
.+.++++|.+.|.+..++..| ||....++.+++.
T Consensus 112 ~g~afV~f~~~~~a~~A~~~l-~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 112 RGFAFVRFHDKRDAEDAMDAM-DGAVLDGRELRVQ 145 (158)
T ss_dssp CCEEEEEESBHHHHHHHHHHS-TTEESSSSEEEEE
T ss_pred ceEEEEEECCHHHHHHHHHHh-CCCEECCeEEEEE
Confidence 467899999999999999999 6677888877774
No 232
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=93.13 E-value=0.024 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.995 Sum_probs=21.4
Q ss_pred CccccccccccCCCCC-CCccccC
Q 008298 192 VKVCHYFNKGFCKHGN-NCRYFHG 214 (570)
Q Consensus 192 ~kpC~YFarG~Ck~G~-~Cry~Hg 214 (570)
..+|.+|.||.|++|. .|+|.|-
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~ 40 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHP 40 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCC
T ss_pred hhhchHHhcCCCCCCCCCCCCcCC
Confidence 5589999999999998 9999997
No 233
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.08 E-value=0.011 Score=51.20 Aligned_cols=24 Identities=38% Similarity=1.025 Sum_probs=21.8
Q ss_pred CCccccccccccCCCCC-CCccccC
Q 008298 191 PVKVCHYFNKGFCKHGN-NCRYFHG 214 (570)
Q Consensus 191 ~~kpC~YFarG~Ck~G~-~Cry~Hg 214 (570)
...+|.||.||.|++|. .|+|.|.
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~ 43 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHP 43 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCC
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCC
Confidence 35689999999999998 7999997
No 234
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=93.04 E-value=0.027 Score=47.49 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=21.9
Q ss_pred CCCccccccccccCCCCCCCccccC
Q 008298 190 FPVKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 190 ~~~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
.....|.+|.||.|.+| +|+|+|.
T Consensus 41 ~~~~vC~dflkG~C~r~-~C~y~H~ 64 (83)
T 3d2n_A 41 GRVIACFDSLKGRCSRE-NCKYLHP 64 (83)
T ss_dssp TEEECCHHHHTTCCCCS-SCSSCCC
T ss_pred CceeehhHhhhccccCC-CcceeCC
Confidence 34789999999999998 9999998
No 235
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=92.71 E-value=0.054 Score=46.27 Aligned_cols=51 Identities=25% Similarity=0.359 Sum_probs=39.7
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHh
Q 008298 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKL 61 (570)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~emirla~gpd~~~~~~i~~ak~~l 61 (570)
..+|.+|++++|+.|.||.|+||=- +..|++.|==. +..|++-|..|-.-|
T Consensus 26 E~Lyp~V~~~~p~~A~KITGMLLEm--d~~Ell~lle~-~e~L~~kV~EA~~vL 76 (88)
T 3kuj_A 26 ERLFPLIQAMHPTLAGKITGMLLEI--DNSELLHMLES-PESLRSKVDEAVAVL 76 (88)
T ss_dssp HHHHHHHHHHCTTTHHHHHHHHTTS--CHHHHHHHHHC-HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHhhCCCccchhhhHhhcC--CHHHHHHHHcC-HHHHHHHHHHHHHHH
Confidence 3689999999999999999999954 55667777433 566788788776655
No 236
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.09 E-value=0.037 Score=45.53 Aligned_cols=22 Identities=27% Similarity=0.883 Sum_probs=20.4
Q ss_pred Ccccccccc-ccCCCCCCCccccC
Q 008298 192 VKVCHYFNK-GFCKHGNNCRYFHG 214 (570)
Q Consensus 192 ~kpC~YFar-G~Ck~G~~Cry~Hg 214 (570)
..+|.||.+ |.|. |..|+|.|.
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~ 60 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHI 60 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCC
T ss_pred CCCCcccCCCCccC-CCCeeccCC
Confidence 468999999 9999 899999998
No 237
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=91.60 E-value=0.043 Score=44.84 Aligned_cols=23 Identities=26% Similarity=0.857 Sum_probs=21.1
Q ss_pred CCcccccccc-ccCCCCCCCccccC
Q 008298 191 PVKVCHYFNK-GFCKHGNNCRYFHG 214 (570)
Q Consensus 191 ~~kpC~YFar-G~Ck~G~~Cry~Hg 214 (570)
...+|.||.+ |.|.+ .+|+|.|.
T Consensus 43 ~~~~C~~f~~~G~C~~-~~C~y~H~ 66 (72)
T 2rhk_C 43 KMSECYFYSKFGECSN-KECPFLHI 66 (72)
T ss_dssp SCCBCHHHHHHSCCSB-TTCCSBCC
T ss_pred cCCcccccCCCCCCCC-CCeeccCC
Confidence 3568999999 99999 99999998
No 238
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=90.25 E-value=0.81 Score=39.05 Aligned_cols=66 Identities=6% Similarity=0.046 Sum_probs=54.2
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc------CCCceEEEEECCHHHHHHHHHhCCCeEEcCe
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D------~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR 415 (570)
.||.|.+| +..+||+++.+.++.+..+.-...+.+ ..-.-|+|.|.+.+++..-.+..+|+.+-+.
T Consensus 2 ~KvVIRrL-PP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRL-PPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEE-CTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCC-CCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 58999999 899999999999999988776666553 1234589999999999999999888877543
No 239
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=89.69 E-value=0.088 Score=44.92 Aligned_cols=23 Identities=39% Similarity=0.775 Sum_probs=21.4
Q ss_pred CCccccccccccCCCCCCCccccC
Q 008298 191 PVKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 191 ~~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
....|.+|.||-|.++ +|+|+|.
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~ 72 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHP 72 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred ceeeehhhhhCcCCCC-CcceecC
Confidence 4789999999999997 9999998
No 240
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=88.30 E-value=0.15 Score=45.52 Aligned_cols=42 Identities=14% Similarity=-0.051 Sum_probs=37.8
Q ss_pred CCCceEEEEECCHHHHHHHHHhC-CCeEEcCeEEEEeecccccc
Q 008298 385 QKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVLVKPYREKSR 427 (570)
Q Consensus 385 ~sRGFGFVtF~~~e~A~~Al~~m-ng~~i~GR~V~Vk~A~~K~k 427 (570)
.-+|+++|+|.+.++|++|++.+ |+..++| .+.|.++..+..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~ 53 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFT 53 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccc
Confidence 57899999999999999999999 9999999 999998876543
No 241
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=86.51 E-value=1.5 Score=38.12 Aligned_cols=54 Identities=22% Similarity=0.374 Sum_probs=42.6
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhC
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG 407 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~m 407 (570)
.+-++|+++ .++...||.+.|+.||. ..|+.+-| --|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l~FP--~ewKt~DI~~lFs~fgg-v~I~WidD---TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHVTFP--KEWKTSDLYQLFSAFGN-IQISWIDD---TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEEECC--TTCCHHHHHHHHTTTCS-CCCEEEET---TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEEeCC--hhhhhHHHHHHhhccCC-EEEEEEcC---CeEEEEecCHHHHHHHHHhc
Confidence 456777554 67789999999999993 45555543 46999999999999999864
No 242
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=85.24 E-value=0.88 Score=39.73 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=42.7
Q ss_pred CEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC
Q 008298 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN 408 (570)
Q Consensus 349 rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mn 408 (570)
+-++|+++ ..+...||...|+.|| -..|+.+-| .-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP--~ewKt~Di~~lFs~fg-gv~I~WidD---TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFP--KEWKTSDLYQLFSAFG-NIQISWIDD---TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECC--TTCCHHHHHHHTTTSE-EEEEEEEET---TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCC--hhhhhHHHHHHHhccC-CEEEEEEcC---CeEEEEecCHHHHHHHHHhcc
Confidence 35677554 6778999999999999 455666643 469999999999999999753
No 243
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=73.80 E-value=1 Score=34.56 Aligned_cols=25 Identities=32% Similarity=0.863 Sum_probs=21.4
Q ss_pred CCCccccccc-cccCCCCCCCccccC
Q 008298 190 FPVKVCHYFN-KGFCKHGNNCRYFHG 214 (570)
Q Consensus 190 ~~~kpC~YFa-rG~Ck~G~~Cry~Hg 214 (570)
..-.+|-=|+ -|+|.+|-.|.+.|-
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHD 43 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHD 43 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred cccchhhhccccccCCCCCCCCcccc
Confidence 4577898774 599999999999997
No 244
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=72.67 E-value=5.8 Score=34.28 Aligned_cols=66 Identities=5% Similarity=0.030 Sum_probs=47.8
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc------CCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 008298 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (570)
Q Consensus 348 ~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D------~sRGFGFVtF~~~e~A~~Al~~mng~~i~G 414 (570)
+-||.|.+| +..+||+++.+.++.+=++.-...+.+ ..-.-|+|.|.+.+++..-.+..+|+.+-+
T Consensus 9 ~~KvVIRrL-PP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRL-PPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECC-CSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCC-CCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 458999999 889999998777766544322222222 112348999999999999999989887754
No 245
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=58.77 E-value=2.3 Score=41.90 Aligned_cols=25 Identities=40% Similarity=0.820 Sum_probs=0.0
Q ss_pred CCCCCccccccccccCCCCCCCccccC
Q 008298 188 PEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 188 ~~~~~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
++..+.||-|-.| |.-|+.|+|.|-
T Consensus 188 ~~~~~~~~~~~~~--~~~~~~~~~~~~ 212 (223)
T 3v33_A 188 LEHRKQPCPYGRK--CTYGIKCRFFHP 212 (223)
T ss_dssp ---------------------------
T ss_pred cccCCCCCCCCcc--cccCCcceecCC
Confidence 4557899999765 999999999995
No 246
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=55.30 E-value=3.4 Score=35.09 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=0.0
Q ss_pred CCCCCEEEEcCCCCCCCCHHH
Q 008298 345 VAGSRQIYLTFPAESTFTEQD 365 (570)
Q Consensus 345 ~~~~rtIfVg~L~~~~~TEed 365 (570)
.....+|||+|| +..+|++.
T Consensus 94 ~~~~~~lyv~Nl-~~~~T~~a 113 (115)
T 4f25_A 94 AKEFTNVYIKNF-GPGSTRAA 113 (115)
T ss_dssp ---------------------
T ss_pred cCCCCceEeCCC-CCCccccc
Confidence 344568999999 77788764
No 247
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=53.04 E-value=33 Score=37.28 Aligned_cols=56 Identities=21% Similarity=0.404 Sum_probs=44.4
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC
Q 008298 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN 408 (570)
Q Consensus 347 ~~rtIfVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mn 408 (570)
..+.++|++. ..+...+|.+.|+.||.| +|+.+ ....+||.|.+.+.|..++..++
T Consensus 439 R~~vl~v~f~--~~~~~~~i~~~fs~fg~v-~V~wi---ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVTFP--KEWKTSDLYQLFSAFGNI-QISWI---DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEECC--TTCCHHHHHHHGGGGCCC-EEEEC---SSSEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEeCC--CCCCHHHHHHHHHhcCCE-EEEEE---cCCeEEEEECCHHHHHHHHHHHH
Confidence 3558888854 456789999999999954 55555 45679999999999999998864
No 248
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=28.78 E-value=25 Score=34.69 Aligned_cols=23 Identities=30% Similarity=0.714 Sum_probs=21.6
Q ss_pred CCccccccccccCCCCCCCccccC
Q 008298 191 PVKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 191 ~~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
-..+|-||-+|-|+- .+|+-.|.
T Consensus 174 kLHIC~~Fl~G~C~f-~~CkRsH~ 196 (229)
T 3u9g_A 174 RLHICEHFTRGNCSY-LNCLRSHN 196 (229)
T ss_dssp SBCSCHHHHTTCCCC-SSCSSCCC
T ss_pred ceeccchhhcCCcCC-CCccCccC
Confidence 489999999999999 89999997
No 249
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=27.28 E-value=20 Score=35.40 Aligned_cols=25 Identities=28% Similarity=0.604 Sum_probs=22.0
Q ss_pred CCCccccccccccC----CCCCCCccccC
Q 008298 190 FPVKVCHYFNKGFC----KHGNNCRYFHG 214 (570)
Q Consensus 190 ~~~kpC~YFarG~C----k~G~~Cry~Hg 214 (570)
..++.|.||--|-| ..|+.|+|.|-
T Consensus 87 ~~LHLCK~~l~G~C~~~~~~~~~Ck~SHd 115 (229)
T 3u9g_A 87 DSLHLCKLNLLGRCHYAQSQRNLCKYSHD 115 (229)
T ss_dssp CSBCCCHHHHTTCCGGGTCCSSCCSSCSC
T ss_pred cceeechhhhcCcCCcccCCCCCcccccc
Confidence 46899999999999 46799999997
No 250
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=26.28 E-value=71 Score=25.00 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=42.1
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCC-----CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEeecc
Q 008298 350 QIYLTFPAESTFTEQDVSNYFSKFG-----PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (570)
Q Consensus 350 tIfVg~L~~~~~TEedLr~~FsqFG-----~V~~VrI~~D~sRGFGFVtF~~~e~A~~Al~~mng~~i~GR~V~Vk~A~ 423 (570)
++||..=....++..+|-.++..-| .|=.|+| .-.|.||.-.. +.+..+++.+++..++|+.+.|..++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i----~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITI----MDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEE----CSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEE----eCCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4555433234566667777776544 3445666 45589999655 55778888889999999999998764
No 251
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=26.08 E-value=13 Score=33.99 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=18.0
Q ss_pred HHHHHHhhcCCCeeEEEeeccCCCceEEEEEC
Q 008298 364 QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFV 395 (570)
Q Consensus 364 edLr~~FsqFG~V~~VrI~~D~sRGFGFVtF~ 395 (570)
+|+..+|...|.|+-... .||||||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET----TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC----CCCeeEEeeC
Confidence 455666777777665533 8999999975
No 252
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=23.99 E-value=18 Score=27.38 Aligned_cols=22 Identities=32% Similarity=0.783 Sum_probs=17.5
Q ss_pred CccccccccccCCCCCCCccccC
Q 008298 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 192 ~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
..||.=-.++||-|| .|.|.+.
T Consensus 5 ~~~C~~~~~~yC~nG-~C~~~~~ 26 (50)
T 3e50_C 5 FNDCPDSHTQFCFHG-TCRFLVQ 26 (50)
T ss_pred ccccChhhcCcccCC-EEeeccC
Confidence 356766668999999 9999765
No 253
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=23.60 E-value=18 Score=27.32 Aligned_cols=22 Identities=32% Similarity=0.827 Sum_probs=18.1
Q ss_pred CccccccccccCCCCCCCccccC
Q 008298 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (570)
Q Consensus 192 ~kpC~YFarG~Ck~G~~Cry~Hg 214 (570)
..||.=-..+||.|| .|+|.+.
T Consensus 9 ~~~C~~~~~~yC~nG-~C~~i~~ 30 (50)
T 2rnl_A 9 KNPCNAEFQNFCIHG-ECKYIEH 30 (50)
T ss_dssp CCTTTTTGGGTCSSS-EEEEETT
T ss_pred CcccCchhhCcCCCC-EEEEecC
Confidence 358876677999999 9999876
No 254
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=21.46 E-value=78 Score=27.24 Aligned_cols=64 Identities=27% Similarity=0.315 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHhccCCCCccccccchhHHHhhccchhcccccccccccccCCc-cHHHHHHHhhhccccccCCCC
Q 008298 244 LERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGY-SLTKLLARLKNSIRLIDRPHG 318 (570)
Q Consensus 244 le~le~e~~Ell~~r~~~p~~~~~lp~~yf~kyG~~l~~~~~~~~sqR~~k~G~-s~~kll~rl~n~i~lidr~~G 318 (570)
|+++...++-+|-+.+ .++++..|--.|.+-.|..+-- ++.|| ++..+|..+++.+++.-+..|
T Consensus 9 l~~vkk~irslLiS~K-~gvtl~~L~~dYr~~~G~~iP~----------r~lGy~sl~~fL~sipdvv~~~~~~~G 73 (102)
T 3s93_A 9 QECLRKEIRSLLISTK-DGLSPQELEKEYLLMVGNHLPL----------RILGYRSTMELVLDMPDVVRVCPGAGG 73 (102)
T ss_dssp HHHHHHHHHHHHHSSS-SCBCHHHHHHHHHHHHSSCCCT----------GGGTCSSHHHHHHTCTTTEEEECCGGG
T ss_pred HHHHHHHHHHhheeCC-CCcCHHHHHHHHHHHcCCcCCc----------hhcCcCCHHHHHHcCCCeEEEEecCCC
Confidence 6777888899999877 6888888888999999987653 45688 588888766555544444444
No 255
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=20.16 E-value=17 Score=23.71 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=11.6
Q ss_pred chhhhhhhhhcccC
Q 008298 21 NVSKIIGYLLLQDH 34 (570)
Q Consensus 21 ~a~ki~g~ll~qd~ 34 (570)
++.||-+.|||||+
T Consensus 1 ~VGKiYAallI~d~ 14 (23)
T 3dve_B 1 HMGKVYAALMIFDF 14 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 46799999999875
Done!