BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008299
         (570 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
 pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
 pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
 pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
          Length = 450

 Score = 28.9 bits (63), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 154 ASEALKIMHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISL 213
           A++  + +HM   D G    +NK  W   I +  A +  +  S + VLG N         
Sbjct: 56  AAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNN-------- 107

Query: 214 RLRTDDLKGFRKY 226
               D +KGF ++
Sbjct: 108 ---VDVIKGFARF 117


>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
           Coli At 1.86 Angstroms Resolution: Comparison With The
           Enzyme From Human Erythrocytes
 pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
           Coli At 1.86 Angstroms Resolution: Comparison With The
           Enzyme From Human Erythrocytes
 pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
 pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
          Length = 450

 Score = 28.9 bits (63), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 154 ASEALKIMHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISL 213
           A++  + +HM   D G    +NK  W   I +  A +  +  S + VLG N         
Sbjct: 56  AAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNN-------- 107

Query: 214 RLRTDDLKGFRKY 226
               D +KGF ++
Sbjct: 108 ---VDVIKGFARF 117


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.132    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,994,373
Number of Sequences: 62578
Number of extensions: 782628
Number of successful extensions: 1585
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1580
Number of HSP's gapped (non-prelim): 12
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)