BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008299
(570 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94580|YQ77_SCHPO Ubiquitin and WLM domain-containing protein C1442.07c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC1442.07c PE=4 SV=1
Length = 282
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 95/195 (48%), Gaps = 22/195 (11%)
Query: 131 PQGQYMFCDFRTLQIPGVELNPPASEALKIMHMLAADPGIIAIMNKHRWRVGIMTELAPV 190
P Y F + L P + AL+ + L D GI IM+ HRW V +++E+ P
Sbjct: 105 PASIYTFNELVVLDYPHKD------RALRYLERLRDDTGIKKIMDSHRWTVPLLSEMDPA 158
Query: 191 GYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDANFY 250
+ K LG N N G I LRLRTD GFR Y+++K TL+HEL H V+ EHD++F+
Sbjct: 159 EHTRHDSK-TLGLNHNQGAHIELRLRTDRYDGFRDYKTVKSTLIHELTHNVHGEHDSSFW 217
Query: 251 GLDKQLNQEAVALDWTKSRGHTLSGVRHTSHHEDDLFVGDSRSFSQKLGGNISDQLASAR 310
L +QL +EA A D G +V D S++ + + DQ R
Sbjct: 218 ELFRQLTKEADAADLLGKPGS---------------YVSDRASYTPQQDNDDEDQKNHRR 262
Query: 311 ASSVAAAYRRLANAS 325
+AAA RR + S
Sbjct: 263 DLLLAAAERRKQSGS 277
>sp|P38838|WSS1_YEAST DNA damage response protein WSS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=WSS1 PE=1 SV=1
Length = 269
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 12/113 (10%)
Query: 152 PPASEALKIMHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEI 211
P +AL ++ +A + +M ++ ++V + E P + +LG N NHG +I
Sbjct: 39 PNKEDALNLIKEIAHK--VSYLMKENHFKVTNLVEFYP------RDQRLLGMNVNHGSKI 90
Query: 212 SLRLR--TDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYG-LDKQLNQEAV 261
LRLR TD+ + F E I T+LHEL H ++ HD FY LD+ + ++ V
Sbjct: 91 MLRLRCSTDEFQ-FLPMECIMGTMLHELTHNLFGPHDKKFYNKLDELIGRQWV 142
>sp|E1U8D0|SOGA1_MOUSE Protein SOGA1 OS=Mus musculus GN=Soga1 PE=1 SV=3
Length = 1418
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 43/116 (37%), Gaps = 27/116 (23%)
Query: 329 LGVSEVHEEPDPDDSGLIMLGESHHTVSAAKGSLDIESPSRDQWKGHEPDPDDDPGYENK 388
LG+SE +P+P G++ E V G P P G E+
Sbjct: 1270 LGMSEARTKPEPPKYGIVQ--EFFRNVC-----------------GRAPSPTTAAGEESC 1310
Query: 389 LEPDPDDSQDGEPLEPENYSDPEMVQQVSPKKLAATNPYEEPDPDDSETAWKSGVV 444
+P EPL P +Y PE V ++ KK A EE P K G++
Sbjct: 1311 KKP--------EPLSPASYHQPEGVSRILNKKAAKAGGSEEVRPTMLSQVGKDGIL 1358
>sp|Q9P7B5|WSS1_SCHPO DNA damage response protein wss1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=wss1 PE=3 SV=1
Length = 283
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 202 GFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAV 261
G N N GE I L LR D + +E + LHEL H+ HD F+ L +
Sbjct: 85 GRNWNKGECIELVLR-DASNRWLPFEFVMDVFLHELCHIWQGPHDRRFFSHLSTLRAALI 143
Query: 262 AL 263
AL
Sbjct: 144 AL 145
>sp|Q92353|UBP6_SCHPO Ubiquitin carboxyl-terminal hydrolase 6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp6 PE=1 SV=2
Length = 468
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDE 66
M+ ++ W+GKKY +E+ L H+L LT V + + IV KG +L
Sbjct: 2 MIPIAIRWQGKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIV---KGGQL------- 51
Query: 67 HSSLSLQEVSIIEGKSIRMMGVS 89
+ L V I ++ MMG +
Sbjct: 52 KDDVLLGSVGIKPNATLLMMGTA 74
>sp|O94964|SOGA1_HUMAN Protein SOGA1 OS=Homo sapiens GN=SOGA1 PE=1 SV=2
Length = 1423
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 27/101 (26%)
Query: 329 LGVSEVHEEPDPDDSGLIMLGESHHTVSAAKGSLDIESPSRDQWKGHEPDPDDDPGYENK 388
LG+SE +P+P G++ E V G P P G E
Sbjct: 1273 LGMSETRAKPEPPKYGIVQ--EFFRNVC-----------------GRAPSPTSSAGEEGT 1313
Query: 389 LEPDPDDSQDGEPLEPENYSDPEMVQQVSPKKLAATNPYEE 429
+P EPL P +Y PE V ++ KK A EE
Sbjct: 1314 KKP--------EPLSPASYHQPEGVARILNKKAAKLGSSEE 1346
>sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens GN=RYR3 PE=1 SV=3
Length = 4870
Score = 32.7 bits (73), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 386 ENKLEPDPDDSQDGEPLEPENYSDPEMVQQVSPKKLAATNPYEEPDPDDSETAWKSGV 443
E ++ D D + D +P+ N+S PE ++ + K A + +++ D S++ WK G+
Sbjct: 2587 EKQISVDADGNFDPKPINTMNFSLPEKLEYIVTK--YAEHSHDKWACDKSQSGWKYGI 2642
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,893,193
Number of Sequences: 539616
Number of extensions: 10644412
Number of successful extensions: 27110
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 209
Number of HSP's that attempted gapping in prelim test: 25852
Number of HSP's gapped (non-prelim): 683
length of query: 570
length of database: 191,569,459
effective HSP length: 123
effective length of query: 447
effective length of database: 125,196,691
effective search space: 55962920877
effective search space used: 55962920877
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)