Query 008299
Match_columns 570
No_of_seqs 293 out of 575
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 22:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008299.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008299hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08325 WLM: WLM domain; Int 100.0 5.6E-47 1.2E-51 365.0 16.3 173 137-322 3-186 (186)
2 KOG4842 Protein involved in si 100.0 2.1E-32 4.6E-37 272.0 2.9 274 7-318 3-278 (278)
3 cd01813 UBP_N UBP ubiquitin pr 99.7 1.1E-17 2.4E-22 139.5 8.1 74 8-88 1-74 (74)
4 KOG4842 Protein involved in si 99.7 9.5E-18 2.1E-22 167.9 7.6 178 151-336 41-239 (278)
5 cd01812 BAG1_N Ubiquitin-like 99.3 2.6E-12 5.7E-17 103.9 7.9 70 8-87 1-70 (71)
6 KOG1872 Ubiquitin-specific pro 99.3 8.6E-13 1.9E-17 141.6 5.7 85 7-101 3-88 (473)
7 cd01791 Ubl5 UBL5 ubiquitin-li 98.9 5.7E-09 1.2E-13 87.3 7.5 70 7-86 1-71 (73)
8 cd01805 RAD23_N Ubiquitin-like 98.9 5.2E-09 1.1E-13 86.2 7.0 70 10-89 3-75 (77)
9 cd01809 Scythe_N Ubiquitin-lik 98.9 6.9E-09 1.5E-13 83.8 7.0 69 8-86 1-70 (72)
10 cd01807 GDX_N ubiquitin-like d 98.8 7.7E-09 1.7E-13 85.4 6.6 71 9-89 2-73 (74)
11 cd01800 SF3a120_C Ubiquitin-li 98.8 6.5E-09 1.4E-13 86.7 6.1 66 13-88 4-69 (76)
12 PF00240 ubiquitin: Ubiquitin 98.8 1.1E-08 2.5E-13 82.4 6.5 66 14-89 3-68 (69)
13 cd01804 midnolin_N Ubiquitin-l 98.8 1.7E-08 3.8E-13 84.8 7.8 71 8-89 2-73 (78)
14 smart00213 UBQ Ubiquitin homol 98.7 3.7E-08 8.1E-13 77.0 6.1 64 8-81 1-64 (64)
15 cd01792 ISG15_repeat1 ISG15 ub 98.6 9.1E-08 2E-12 80.5 7.1 72 8-89 3-77 (80)
16 cd01796 DDI1_N DNA damage indu 98.6 9.4E-08 2E-12 78.9 6.1 68 9-85 2-69 (71)
17 cd01769 UBL Ubiquitin-like dom 98.6 1.4E-07 3E-12 74.7 6.9 66 12-87 2-68 (69)
18 cd01793 Fubi Fubi ubiquitin-li 98.6 1.3E-07 2.8E-12 78.2 6.5 68 9-87 2-69 (74)
19 cd01803 Ubiquitin Ubiquitin. U 98.6 1.6E-07 3.5E-12 76.6 6.7 69 9-87 2-71 (76)
20 cd01806 Nedd8 Nebb8-like ubiq 98.5 2.9E-07 6.3E-12 75.1 7.5 70 9-88 2-72 (76)
21 cd01810 ISG15_repeat2 ISG15 ub 98.5 1.4E-07 3.1E-12 78.0 5.5 64 13-86 5-68 (74)
22 cd01794 DC_UbP_C dendritic cel 98.5 1.8E-07 3.9E-12 77.5 5.6 62 15-86 7-68 (70)
23 cd01797 NIRF_N amino-terminal 98.5 3E-07 6.6E-12 77.7 6.4 71 8-88 3-74 (78)
24 PTZ00044 ubiquitin; Provisiona 98.5 4.6E-07 9.9E-12 74.6 6.8 63 14-86 8-70 (76)
25 cd01798 parkin_N amino-termina 98.4 4.9E-07 1.1E-11 73.8 6.2 65 13-87 5-69 (70)
26 cd01808 hPLIC_N Ubiquitin-like 98.4 4.7E-07 1E-11 74.2 6.1 68 9-86 2-69 (71)
27 TIGR00601 rad23 UV excision re 98.4 3.8E-07 8.2E-12 97.6 7.1 73 9-91 2-78 (378)
28 PF14560 Ubiquitin_2: Ubiquiti 98.4 1.1E-06 2.4E-11 75.0 7.5 80 7-88 1-83 (87)
29 cd01802 AN1_N ubiquitin-like d 98.4 1E-06 2.3E-11 78.3 7.3 70 7-86 27-97 (103)
30 cd01790 Herp_N Homocysteine-re 98.3 1.5E-06 3.2E-11 74.5 6.8 70 7-86 1-77 (79)
31 PF01863 DUF45: Protein of unk 98.3 7.3E-07 1.6E-11 85.6 4.7 62 198-264 138-199 (205)
32 KOG0010 Ubiquitin-like protein 98.1 3.1E-06 6.8E-11 92.3 6.3 74 7-90 15-88 (493)
33 cd01799 Hoil1_N Ubiquitin-like 98.1 4.9E-06 1.1E-10 70.1 5.9 61 15-85 11-72 (75)
34 cd01795 USP48_C USP ubiquitin- 98.1 5.1E-06 1.1E-10 74.2 6.1 62 18-88 16-77 (107)
35 cd01789 Alp11_N Ubiquitin-like 98.0 3E-05 6.5E-10 66.4 9.0 78 8-88 2-81 (84)
36 cd01815 BMSC_UbP_N Ubiquitin-l 97.8 2.2E-05 4.9E-10 66.8 4.8 53 24-86 18-73 (75)
37 COG1451 Predicted metal-depend 97.7 2.4E-05 5.1E-10 78.5 4.1 62 198-264 149-210 (223)
38 KOG0011 Nucleotide excision re 97.6 8.3E-05 1.8E-09 78.1 6.1 73 9-91 2-77 (340)
39 cd01763 Sumo Small ubiquitin-r 97.5 0.00047 1E-08 59.2 8.0 71 6-86 10-81 (87)
40 PLN02560 enoyl-CoA reductase 97.1 0.0012 2.5E-08 69.4 7.4 73 10-89 3-86 (308)
41 PF11976 Rad60-SLD: Ubiquitin- 96.9 0.0034 7.4E-08 51.1 7.2 69 8-86 1-71 (72)
42 cd00196 UBQ Ubiquitin-like pro 96.8 0.0044 9.5E-08 44.9 6.2 63 15-87 6-68 (69)
43 cd01801 Tsc13_N Ubiquitin-like 96.7 0.0031 6.7E-08 52.8 5.7 69 9-85 2-74 (77)
44 smart00731 SprT SprT homologue 96.7 0.0011 2.4E-08 61.9 3.1 34 224-257 54-93 (146)
45 PF11543 UN_NPL4: Nuclear pore 96.5 0.01 2.2E-07 51.0 7.0 76 4-84 1-76 (80)
46 KOG0005 Ubiquitin-like protein 96.5 0.0039 8.4E-08 51.5 4.2 62 14-85 8-69 (70)
47 KOG0003 Ubiquitin/60s ribosoma 96.2 0.0023 5.1E-08 58.1 1.7 67 9-85 3-69 (128)
48 cd01788 ElonginB Ubiquitin-lik 96.0 0.015 3.2E-07 53.5 6.1 60 8-77 3-62 (119)
49 cd01814 NTGP5 Ubiquitin-like N 95.8 0.0089 1.9E-07 54.7 3.6 47 20-76 19-72 (113)
50 PF10263 SprT-like: SprT-like 95.5 0.013 2.8E-07 54.3 3.7 59 199-258 30-97 (157)
51 PF08817 YukD: WXG100 protein 95.0 0.048 1E-06 46.0 5.3 72 7-85 2-78 (79)
52 KOG0004 Ubiquitin/40S ribosoma 94.9 0.027 6E-07 54.1 3.9 61 16-86 10-70 (156)
53 KOG4248 Ubiquitin-like protein 94.3 0.067 1.4E-06 63.7 5.8 66 10-86 5-71 (1143)
54 KOG0001 Ubiquitin and ubiquiti 94.0 0.26 5.7E-06 38.0 7.0 66 14-89 7-72 (75)
55 KOG3206 Alpha-tubulin folding 92.2 0.27 5.9E-06 49.6 5.7 83 7-93 1-86 (234)
56 smart00666 PB1 PB1 domain. Pho 91.8 0.67 1.5E-05 38.5 6.8 45 7-51 1-45 (81)
57 PRK04351 hypothetical protein; 91.7 0.18 3.9E-06 48.1 3.7 31 226-256 58-95 (149)
58 PRK04860 hypothetical protein; 90.6 0.26 5.6E-06 47.7 3.6 32 225-256 59-97 (160)
59 cd01811 OASL_repeat1 2'-5' oli 89.7 1.3 2.8E-05 38.4 6.7 76 9-90 2-78 (80)
60 cd06396 PB1_NBR1 The PB1 domai 88.7 1.4 3.1E-05 38.4 6.4 36 8-43 1-38 (81)
61 PF13881 Rad60-SLD_2: Ubiquiti 88.4 1.1 2.3E-05 41.0 5.7 58 15-82 11-76 (111)
62 KOG0006 E3 ubiquitin-protein l 88.1 0.74 1.6E-05 49.2 5.1 50 9-61 2-55 (446)
63 PF00564 PB1: PB1 domain; Int 88.1 1.9 4.2E-05 35.8 6.7 45 7-51 1-46 (84)
64 cd06407 PB1_NLP A PB1 domain i 87.1 1.4 3.1E-05 38.0 5.5 36 8-43 1-36 (82)
65 PF11470 TUG-UBL1: GLUT4 regul 86.7 1.3 2.7E-05 37.0 4.7 65 11-85 1-65 (65)
66 cd06397 PB1_UP1 Uncharacterize 84.7 1.8 4E-05 37.8 4.8 39 8-46 1-39 (82)
67 COG3091 SprT Zn-dependent meta 84.6 1 2.2E-05 43.6 3.6 30 227-256 59-95 (156)
68 cd06406 PB1_P67 A PB1 domain i 84.6 3 6.4E-05 36.4 6.1 45 8-53 3-47 (80)
69 smart00166 UBX Domain present 83.4 8.9 0.00019 32.2 8.5 75 6-85 3-78 (80)
70 KOG4495 RNA polymerase II tran 82.5 2.8 6.1E-05 38.0 5.2 44 8-51 3-46 (110)
71 cd05992 PB1 The PB1 domain is 81.6 3.8 8.3E-05 33.7 5.5 44 8-51 1-45 (81)
72 PF04450 BSP: Peptidase of pla 80.8 1.5 3.1E-05 44.0 3.2 54 209-265 74-132 (205)
73 KOG3854 SPRT-like metalloprote 79.9 1.3 2.9E-05 49.3 2.9 40 207-251 334-380 (505)
74 KOG3493 Ubiquitin-like protein 77.5 1.8 3.9E-05 36.7 2.2 59 16-85 11-70 (73)
75 PF00789 UBX: UBX domain; Int 77.4 16 0.00035 30.4 8.1 72 6-85 5-80 (82)
76 cd06398 PB1_Joka2 The PB1 doma 76.1 9.6 0.00021 33.7 6.6 43 8-50 1-48 (91)
77 PF05569 Peptidase_M56: BlaR1 74.6 3.2 7E-05 42.7 3.8 25 224-248 191-215 (299)
78 PF13485 Peptidase_MA_2: Pepti 74.3 3.2 6.9E-05 35.7 3.1 22 225-246 21-42 (128)
79 cd04270 ZnMc_TACE_like Zinc-de 73.6 2.6 5.7E-05 42.8 2.8 29 221-249 159-187 (244)
80 cd01772 SAKS1_UBX SAKS1-like U 73.2 20 0.00044 30.4 7.6 71 7-85 4-77 (79)
81 cd06408 PB1_NoxR The PB1 domai 72.5 9.2 0.0002 33.8 5.5 42 7-51 2-43 (86)
82 PF06114 DUF955: Domain of unk 71.9 3.7 8.1E-05 34.9 3.0 26 224-249 37-62 (122)
83 PRK04897 heat shock protein Ht 69.2 3.3 7.1E-05 43.4 2.4 23 224-246 132-154 (298)
84 KOG3931 Uncharacterized conser 68.9 8.5 0.00018 42.0 5.3 51 206-257 83-142 (484)
85 PRK03072 heat shock protein Ht 68.2 3.5 7.7E-05 43.0 2.4 24 223-246 121-144 (288)
86 PRK03982 heat shock protein Ht 67.8 3.6 7.9E-05 42.6 2.4 43 200-246 100-142 (288)
87 cd01773 Faf1_like1_UBX Faf1 ik 67.3 52 0.0011 28.8 9.0 73 5-85 3-78 (82)
88 PRK03001 M48 family peptidase; 66.3 4.1 8.9E-05 42.1 2.4 20 225-244 120-139 (283)
89 COG0501 HtpX Zn-dependent prot 66.1 3.8 8.2E-05 41.5 2.1 64 172-246 111-174 (302)
90 PRK02391 heat shock protein Ht 64.1 4.8 0.0001 42.3 2.4 21 224-244 128-148 (296)
91 PF10302 DUF2407: DUF2407 ubiq 64.0 14 0.0003 33.0 5.0 48 10-60 3-56 (97)
92 PRK02870 heat shock protein Ht 63.7 4.7 0.0001 43.3 2.3 75 154-244 114-188 (336)
93 cd01767 UBX UBX (ubiquitin reg 63.2 34 0.00073 28.5 6.9 71 8-84 3-74 (77)
94 PRK05457 heat shock protein Ht 63.1 5.1 0.00011 41.8 2.4 21 224-244 129-149 (284)
95 PRK01345 heat shock protein Ht 61.8 5.5 0.00012 42.2 2.4 21 224-244 119-139 (317)
96 PF01435 Peptidase_M48: Peptid 61.7 5.3 0.00011 38.5 2.1 44 200-248 65-108 (226)
97 COG0089 RplW Ribosomal protein 61.5 24 0.00051 31.8 5.9 37 16-52 21-57 (94)
98 COG4900 Predicted metallopepti 61.1 11 0.00023 35.2 3.8 50 200-254 56-113 (133)
99 PRK01265 heat shock protein Ht 58.9 6.6 0.00014 42.1 2.4 21 224-244 135-155 (324)
100 PF10460 Peptidase_M30: Peptid 58.5 8.2 0.00018 42.1 3.0 41 204-244 114-154 (366)
101 PF14836 Ubiquitin_3: Ubiquiti 58.4 47 0.001 29.6 7.1 61 18-85 15-77 (88)
102 PF13058 DUF3920: Protein of u 58.1 5.5 0.00012 37.0 1.4 20 223-242 70-89 (126)
103 COG5417 Uncharacterized small 57.9 50 0.0011 28.9 7.0 68 8-85 5-80 (81)
104 KOG1639 Steroid reductase requ 57.0 22 0.00048 37.3 5.7 70 9-85 2-76 (297)
105 COG0308 PepN Aminopeptidase N 56.7 9.3 0.0002 45.7 3.4 29 222-250 300-328 (859)
106 cd04271 ZnMc_ADAM_fungal Zinc- 56.2 4.6 0.0001 40.8 0.7 18 231-248 147-164 (228)
107 PF13688 Reprolysin_5: Metallo 53.8 8.6 0.00019 36.8 2.1 27 223-249 136-162 (196)
108 cd06404 PB1_aPKC PB1 domain is 52.9 33 0.00073 30.3 5.3 37 8-44 1-37 (83)
109 PF13582 Reprolysin_3: Metallo 51.9 7.5 0.00016 34.4 1.2 16 231-246 109-124 (124)
110 PF12388 Peptidase_M57: Dual-a 51.9 13 0.00029 37.7 3.1 40 204-248 113-152 (211)
111 cd04272 ZnMc_salivary_gland_MP 49.7 10 0.00022 37.6 1.8 20 229-248 145-164 (220)
112 PF13019 Telomere_Sde2: Telome 48.5 29 0.00062 34.1 4.7 40 12-51 6-49 (162)
113 cd01771 Faf1_UBX Faf1 UBX doma 48.2 89 0.0019 26.8 7.2 71 7-85 4-77 (80)
114 cd04269 ZnMc_adamalysin_II_lik 47.4 14 0.0003 35.6 2.4 23 226-248 128-150 (194)
115 PF14521 Aspzincin_M35: Lysine 47.3 10 0.00022 35.8 1.5 16 227-242 94-109 (148)
116 PRK14015 pepN aminopeptidase N 47.0 11 0.00024 45.4 1.9 20 225-244 292-311 (875)
117 PF12725 DUF3810: Protein of u 47.0 12 0.00027 39.7 2.2 36 224-259 191-228 (318)
118 TIGR02414 pepN_proteo aminopep 47.0 11 0.00024 45.2 2.0 21 224-244 278-298 (863)
119 PF14533 USP7_C2: Ubiquitin-sp 45.7 25 0.00054 35.2 3.9 44 8-51 19-69 (213)
120 cd04267 ZnMc_ADAM_like Zinc-de 45.7 10 0.00023 36.3 1.2 22 227-248 131-152 (192)
121 TIGR02412 pepN_strep_liv amino 45.3 13 0.00028 44.3 2.2 18 226-243 284-301 (831)
122 PF13574 Reprolysin_2: Metallo 44.5 12 0.00027 35.9 1.5 20 229-248 111-130 (173)
123 PRK06437 hypothetical protein; 44.0 96 0.0021 25.6 6.5 53 15-86 9-61 (67)
124 cd01770 p47_UBX p47-like ubiqu 43.6 1.1E+02 0.0023 26.2 6.9 68 7-83 4-75 (79)
125 TIGR02411 leuko_A4_hydro leuko 43.0 13 0.00028 42.7 1.7 16 229-244 279-294 (601)
126 cd06411 PB1_p51 The PB1 domain 42.8 48 0.001 29.0 4.7 42 10-52 1-42 (78)
127 cd01774 Faf1_like2_UBX Faf1 ik 42.6 1.2E+02 0.0026 26.3 7.2 76 7-85 4-82 (85)
128 KOG2982 Uncharacterized conser 42.2 39 0.00085 36.8 4.9 74 10-85 339-414 (418)
129 PF01433 Peptidase_M1: Peptida 41.5 19 0.0004 37.8 2.4 20 225-244 291-310 (390)
130 PF06262 DUF1025: Possibl zinc 40.3 19 0.00041 32.3 1.9 16 226-241 70-85 (97)
131 PHA02456 zinc metallopeptidase 39.6 15 0.00033 34.3 1.3 16 227-242 77-92 (141)
132 PRK05738 rplW 50S ribosomal pr 39.4 56 0.0012 28.9 4.7 37 16-52 20-56 (92)
133 KOG1046 Puromycin-sensitive am 39.3 18 0.0004 43.5 2.2 28 223-250 318-346 (882)
134 PF01447 Peptidase_M4: Thermol 38.5 19 0.0004 34.5 1.7 21 221-241 127-147 (150)
135 PRK08453 fliD flagellar cappin 37.7 44 0.00095 39.4 4.8 33 7-39 128-160 (673)
136 TIGR03636 L23_arch archaeal ri 37.3 53 0.0012 28.4 4.1 36 17-52 15-50 (77)
137 PF10023 DUF2265: Predicted am 37.3 44 0.00096 36.3 4.5 43 225-267 161-204 (337)
138 CHL00030 rpl23 ribosomal prote 37.2 56 0.0012 29.2 4.4 37 16-52 19-55 (93)
139 KOG4250 TANK binding protein k 37.2 53 0.0011 38.9 5.3 42 10-51 318-359 (732)
140 PF13699 DUF4157: Domain of un 37.2 16 0.00034 31.4 0.9 15 229-243 61-75 (79)
141 PF01421 Reprolysin: Reprolysi 36.3 26 0.00057 33.9 2.4 25 224-248 126-150 (199)
142 PRK08364 sulfur carrier protei 36.3 1.7E+02 0.0037 24.1 6.9 33 10-46 5-39 (70)
143 PF00276 Ribosomal_L23: Riboso 36.1 39 0.00085 29.6 3.2 36 17-52 21-56 (91)
144 PRK09908 xanthine dehydrogenas 36.1 60 0.0013 31.8 4.7 39 5-44 4-42 (159)
145 PF00413 Peptidase_M10: Matrix 34.2 25 0.00055 32.0 1.8 24 224-247 100-123 (154)
146 PRK14548 50S ribosomal protein 34.2 62 0.0014 28.4 4.1 37 16-52 21-57 (84)
147 KOG2689 Predicted ubiquitin re 34.1 99 0.0022 32.9 6.2 73 6-85 209-284 (290)
148 PF02102 Peptidase_M35: Deuter 34.1 20 0.00044 39.0 1.4 20 228-247 296-317 (359)
149 PRK12280 rplW 50S ribosomal pr 33.9 1.4E+02 0.003 29.3 6.8 78 16-94 22-99 (158)
150 PF12754 Blt1: Cell-cycle cont 33.9 14 0.00029 39.6 0.0 46 7-52 78-144 (309)
151 KOG2719 Metalloprotease [Gener 33.6 39 0.00085 37.8 3.4 67 175-243 228-294 (428)
152 PF13203 DUF2201_N: Putative m 32.5 31 0.00068 35.5 2.4 20 225-244 56-75 (292)
153 cd04273 ZnMc_ADAMTS_like Zinc- 31.8 11 0.00024 36.9 -1.0 20 229-248 140-159 (207)
154 PF09379 FERM_N: FERM N-termin 31.3 61 0.0013 26.5 3.5 29 15-43 5-33 (80)
155 cd00203 ZnMc Zinc-dependent me 31.2 24 0.00052 32.5 1.2 22 227-248 94-115 (167)
156 PF10463 Peptidase_U49: Peptid 30.2 39 0.00084 34.3 2.5 34 229-262 101-134 (206)
157 cd06410 PB1_UP2 Uncharacterize 29.9 1.1E+02 0.0023 27.5 4.9 32 14-45 20-51 (97)
158 cd04268 ZnMc_MMP_like Zinc-dep 29.5 39 0.00084 31.2 2.2 22 227-248 92-113 (165)
159 COG4219 MecR1 Antirepressor re 29.3 33 0.00071 37.2 1.9 21 224-244 185-205 (337)
160 cd01775 CYR1_RA Ubiquitin doma 29.2 1.4E+02 0.003 27.2 5.5 44 9-52 4-49 (97)
161 PF14891 Peptidase_M91: Effect 28.8 24 0.00051 34.1 0.7 19 230-248 104-122 (174)
162 COG2856 Predicted Zn peptidase 28.3 42 0.00091 34.1 2.4 40 225-264 68-113 (213)
163 PF15639 Tox-MPTase3: Metallop 28.1 25 0.00053 33.5 0.6 13 228-240 99-111 (135)
164 PRK05659 sulfur carrier protei 27.5 2.1E+02 0.0046 22.8 6.0 60 10-86 1-60 (66)
165 cd04279 ZnMc_MMP_like_1 Zinc-d 27.1 43 0.00093 31.2 2.1 22 227-248 102-123 (156)
166 PF07998 Peptidase_M54: Peptid 25.9 47 0.001 33.4 2.2 49 200-248 113-164 (194)
167 PF09768 Peptidase_M76: Peptid 25.9 51 0.0011 32.5 2.4 19 222-240 64-82 (173)
168 PRK12765 flagellar capping pro 25.8 1.2E+02 0.0026 35.3 5.7 35 6-40 131-165 (595)
169 PF12140 DUF3588: Protein of u 25.7 1.9E+02 0.004 27.1 5.9 34 5-38 67-100 (118)
170 PRK06488 sulfur carrier protei 24.6 2.3E+02 0.0051 22.7 5.7 60 10-87 1-60 (65)
171 PRK09672 phage exclusion prote 24.5 63 0.0014 34.7 2.9 35 229-263 165-199 (305)
172 PRK13267 archaemetzincin-like 24.4 53 0.0012 32.4 2.3 23 226-248 122-144 (179)
173 KOG3607 Meltrins, fertilins an 23.5 45 0.00099 39.5 1.9 22 226-247 320-341 (716)
174 cd04278 ZnMc_MMP Zinc-dependen 22.9 43 0.00094 31.2 1.3 23 225-247 103-125 (157)
175 PF03633 Glyco_hydro_65C: Glyc 22.7 1.3E+02 0.0029 23.4 3.8 20 7-26 9-28 (54)
176 PF14247 DUF4344: Domain of un 22.1 44 0.00096 34.1 1.2 21 226-246 89-109 (220)
177 PF04126 Cyclophil_like: Cyclo 21.6 82 0.0018 28.9 2.8 29 8-36 1-29 (120)
178 cd06409 PB1_MUG70 The MUG70 pr 21.5 1.8E+02 0.004 25.7 4.8 31 15-45 9-39 (86)
179 cd04277 ZnMc_serralysin_like Z 20.7 58 0.0013 31.2 1.7 22 227-248 111-132 (186)
No 1
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=100.00 E-value=5.6e-47 Score=365.05 Aligned_cols=173 Identities=43% Similarity=0.583 Sum_probs=150.6
Q ss_pred eeeeeeccCCCCCCCCCHHHHHHHHHHHhcCcchHHHHhhcCeeeccccccCCCCCCCCCCCcccccccCCccEEEEEee
Q 008299 137 FCDFRTLQIPGVELNPPASEALKIMHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLR 216 (570)
Q Consensus 137 f~~i~~L~lp~~~~~P~~~~Al~lL~rLA~d~~V~pIMr~h~w~V~~L~Ef~P~~~~~~s~~~lLGlN~N~Gq~I~LRLR 216 (570)
++.|++|+ .+|++++|+++|+|||++ |+|||++|+|+|++|+||+|.+ .++||+|+|+|++|+||||
T Consensus 3 v~~I~~L~-----~~p~~~~A~~lL~rlA~~--v~pIM~~~~~~V~~L~E~~P~~------~~llG~N~N~G~~I~lrLR 69 (186)
T PF08325_consen 3 VHFIKVLP-----NLPDEEEALELLERLAAD--VKPIMRKHGWRVGSLEEFYPNG------ERLLGLNVNKGEKICLRLR 69 (186)
T ss_pred eeEEeeCC-----CCcCHHHHHHHHHHHHHH--HHHHHHHcCcccCeeeccCCCC------CCCcceecCCCcEEEEEeC
Confidence 57788873 359999999999999999 9999999999999999999996 4599999999999999999
Q ss_pred cCCCCCccchHHHHHHHHHHhhhhccCCccHhHHHHHHHHHHHHHHhhhh------cCCCcccCCCcCCCCccccccccC
Q 008299 217 TDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWT------KSRGHTLSGVRHTSHHEDDLFVGD 290 (570)
Q Consensus 217 t~d~~~Flp~e~V~~tlLHELaHnvhg~Hd~~F~~L~~~L~~E~~~l~~~------~~~G~~Lgg~~~~~~~e~~~~~~~ 290 (570)
+++.++|+||++|+.|||||||||+|++||.+||+||++|..||++++|+ .+.|++|||.........+.....
T Consensus 70 ~~~~~~fl~~~~i~~t~lHELaH~~~~~H~~~F~~l~~~l~~e~~~l~~~G~~~gf~~~G~~l~~~~~~~~~~~~~~~~~ 149 (186)
T PF08325_consen 70 TPDDGGFLPYETILGTMLHELAHNVHGPHDDKFWKLLDELRKECEELDAKGYTEGFWSSGRRLGGSSGQPSEERELRGNG 149 (186)
T ss_pred CCCCCCEeeHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccCCCCcccchhhhhhccc
Confidence 97559999999999999999999999999999999999999999999997 689999998665432111112233
Q ss_pred CCCCCccccCCCC-----CCcccHHHHHHHHHHHHHh
Q 008299 291 SRSFSQKLGGNIS-----DQLASARASSVAAAYRRLA 322 (570)
Q Consensus 291 ~~~~g~rLGG~~~-----~~~~s~Re~~a~AAerR~~ 322 (570)
..+++++|||++. ..+.++|+++|+||+||++
T Consensus 150 ~~~~~~~LgG~s~~~~~~~~~~~~Re~~a~AAerR~~ 186 (186)
T PF08325_consen 150 LSGGGQRLGGGSSSRPRKAQPKSPREAAAAAAERRLR 186 (186)
T ss_pred cCCCCeeCCCCCCCCCCcCCCcCHHHHHHHHHHhhcC
Confidence 4568899999975 4578999999999999974
No 2
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=2.1e-32 Score=272.01 Aligned_cols=274 Identities=33% Similarity=0.394 Sum_probs=219.7
Q ss_pred eEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeecc--CCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQ--NKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 7 ~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk--~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
.|.+...|.|..+-++++.+.+|.|.+..|+++++|.++.-|++++. .++..+..|+.+++..+++ +...+-|.
T Consensus 3 ~i~~~~~~~gn~i~ls~~~~~ri~D~~~~l~K~~~vss~~~kll~~~llk~iahl~~p~mkEh~f~vt----i~~Dk~ir 78 (278)
T KOG4842|consen 3 AIKTEGIKSGNAIYLSMAGSQRIPDKNPHLQKVAVVSSKPNKLLALNLLKEIAHLVSPLMKEHHFKVT----ILVDKYIR 78 (278)
T ss_pred cEEEEEEecCcEEEEEeccccccCCCCcccceeeeeccchHHHHhhhhhhhhhhhhhhhhccccceeE----EeehhHHH
Confidence 46788899999999999999999999999999999999999999865 3445555666666543332 33445555
Q ss_pred EeccchhHHHHhhhhhhhhhcccCccHHHHHHHHhhhcCCCCCCCCCCCCceeeeeeeccCCCCCCCCCHHHHHHHHHHH
Q 008299 85 MMGVSEDEVDKVLQNEKADLRIAGFDEEEKRLRQRMLDRTNAPLKLPQGQYMFCDFRTLQIPGVELNPPASEALKIMHML 164 (570)
Q Consensus 85 LmGS~~~EIe~v~~~a~~~~ri~gf~e~~~r~~~r~~~~~~~~~~~~~~~y~f~~i~~L~lp~~~~~P~~~~Al~lL~rL 164 (570)
+++-...+|......+-.. | -+|++.+ +. +-..|.+.|+|-.+..|+. |.+.+|+..|++|
T Consensus 79 nq~~sg~nvn~gski~lsl-r-~~~~e~~----------~l-p~e~pmgtylhel~h~lqg------Phd~rfl~~L~~L 139 (278)
T KOG4842|consen 79 NQRLSGMNVNHGSKIMLSL-R-CSTDEFQ----------FL-PMECPMGTYLHELTHNLQG------PHDKRFLNKLDEL 139 (278)
T ss_pred hhhhhccccCCcceEEEEe-e-ccccccc----------cc-cccccchhhhhhhhhhhcC------CChHHHHHHHHHH
Confidence 5555555554433322211 1 1222211 11 2345789999998888864 6799999999999
Q ss_pred hcCcchHHHHhhcCeeeccccccCCCCCCCCCCCcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCC
Q 008299 165 AADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 165 A~d~~V~pIMr~h~w~V~~L~Ef~P~~~~~~s~~~lLGlN~N~Gq~I~LRLRt~d~~~Flp~e~V~~tlLHELaHnvhg~ 244 (570)
+++++|..+|-.|+|.||.|+|+.|..++++++.++||+|.|+| +|.+|||+++.++||.|+.|-.|+.|||+|+|++.
T Consensus 140 rad~gii~~mg~hrW~vg~l~el~g~~nt~v~~~~tLg~stnqG-~i~lrlrtdrkkgfR~y~tissTl~heLtr~v~~e 218 (278)
T KOG4842|consen 140 RADQGIIEQMGLHRWFVGNLQELGGRANTRVNRYPTLGISTNQG-VIVLRLRTDRKKGFRHYETISSTLRHELTREVAAE 218 (278)
T ss_pred hhchhHHHHhcccceechhhhhcccccceeecCccceeeccccc-eEEEecccchhcccccCCCchHHHHhhhhhhHhhh
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ccHhHHHHHHHHHHHHHHhhhhcCCCcccCCCcCCCCccccccccCCCCCCccccCCCCCCcccHHHHHHHHHH
Q 008299 245 HDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTSHHEDDLFVGDSRSFSQKLGGNISDQLASARASSVAAAY 318 (570)
Q Consensus 245 Hd~~F~~L~~~L~~E~~~l~~~~~~G~~Lgg~~~~~~~e~~~~~~~~~~~g~rLGG~~~~~~~s~Re~~a~AAe 318 (570)
|+..||+|..++.+|..+++|..+.|++.+....+ -.+.+|+.......+.|+...+|||
T Consensus 219 hde~fyrLdrql~kek~~ad~~~srg~~~sde~~~--------------vdq~de~~p~D~l~~~rdl~~aaae 278 (278)
T KOG4842|consen 219 HDERFYRLDRQLGKEKNNADQIISRGISSSDEVVI--------------VDQDDEVLPGDTLIEVRDLTYAAAE 278 (278)
T ss_pred hhhHHHHHHHHhCcccchhhhhcCCCceeecceee--------------cccccCCCcccccchhhhhhhhhcC
Confidence 99999999999999999999999999886543211 2356677665667788998888875
No 3
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.72 E-value=1.1e-17 Score=139.51 Aligned_cols=74 Identities=22% Similarity=0.369 Sum_probs=65.9
Q ss_pred EEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEec
Q 008299 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (570)
Q Consensus 8 ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmG 87 (570)
|+|+|+|+|++|+|++++++||++||++|+++|||||++||||+++.+|+.+++ ..+|+++++++|.+|||||
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D-------~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAED-------DVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCC-------CcCHHHcCCCCCCEEEEEe
Confidence 589999999999999999999999999999999999999999985446765442 2568889999999999999
Q ss_pred c
Q 008299 88 V 88 (570)
Q Consensus 88 S 88 (570)
|
T Consensus 74 s 74 (74)
T cd01813 74 T 74 (74)
T ss_pred C
Confidence 7
No 4
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=9.5e-18 Score=167.91 Aligned_cols=178 Identities=21% Similarity=0.232 Sum_probs=134.2
Q ss_pred CCCHHHHHHHHHHHhcCcchHHHHhhcCeeeccccccCCCCCCCCCCCcccccccCCccEEEEEeecC-CCCCccchHHH
Q 008299 151 NPPASEALKIMHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTD-DLKGFRKYESI 229 (570)
Q Consensus 151 ~P~~~~Al~lL~rLA~d~~V~pIMr~h~w~V~~L~Ef~P~~~~~~s~~~lLGlN~N~Gq~I~LRLRt~-d~~~Flp~e~V 229 (570)
.|...-++.+|+++|+. +.|+|++|+|.|-.+.++++.+ ..++|+|||+|.+|.|+||.. +...|+|++.+
T Consensus 41 ~~~kll~~~llk~iahl--~~p~mkEh~f~vti~~Dk~irn------q~~sg~nvn~gski~lslr~~~~e~~~lp~e~p 112 (278)
T KOG4842|consen 41 KPNKLLALNLLKEIAHL--VSPLMKEHHFKVTILVDKYIRN------QRLSGMNVNHGSKIMLSLRCSTDEFQFLPMECP 112 (278)
T ss_pred chHHHHhhhhhhhhhhh--hhhhhccccceeEEeehhHHHh------hhhhccccCCcceEEEEeecccccccccccccc
Confidence 36789999999999998 8999999999999999999986 679999999999999999964 55789999999
Q ss_pred HHHHHHHhhhhccCCccHhHHHHHHHHHHHHHH------hhhhcCCCcccCCCcCCC--Ccccccccc-CC----CCCCc
Q 008299 230 KKTLLHELAHMVYSEHDANFYGLDKQLNQEAVA------LDWTKSRGHTLSGVRHTS--HHEDDLFVG-DS----RSFSQ 296 (570)
Q Consensus 230 ~~tlLHELaHnvhg~Hd~~F~~L~~~L~~E~~~------l~~~~~~G~~Lgg~~~~~--~~e~~~~~~-~~----~~~g~ 296 (570)
++|++|||||+..+||+.+|+.-++.|++..-. ..|..+-+..|+|+.... .+-.-.+.- .+ +.+..
T Consensus 113 mgtylhel~h~lqgPhd~rfl~~L~~Lrad~gii~~mg~hrW~vg~l~el~g~~nt~v~~~~tLg~stnqG~i~lrlrtd 192 (278)
T KOG4842|consen 113 MGTYLHELTHNLQGPHDKRFLNKLDELRADQGIIEQMGLHRWFVGNLQELGGRANTRVNRYPTLGISTNQGVIVLRLRTD 192 (278)
T ss_pred chhhhhhhhhhhcCCChHHHHHHHHHHhhchhHHHHhcccceechhhhhcccccceeecCccceeeccccceEEEecccc
Confidence 999999999999999999999999998865322 236667778888754321 000000000 00 11112
Q ss_pred cccCCCC-------CCcccHHHHHHHHHHHHHhhhccccCCCCcccc
Q 008299 297 KLGGNIS-------DQLASARASSVAAAYRRLANASANSLGVSEVHE 336 (570)
Q Consensus 297 rLGG~~~-------~~~~s~Re~~a~AAerR~~da~~~~~~~s~~~~ 336 (570)
++-|... ......|++++++++++.+...+|..+..+.+.
T Consensus 193 rkkgfR~y~tissTl~heLtr~v~~ehde~fyrLdrql~kek~~ad~ 239 (278)
T KOG4842|consen 193 RKKGFRHYETISSTLRHELTREVAAEHDERFYRLDRQLGKEKNNADQ 239 (278)
T ss_pred hhcccccCCCchHHHHhhhhhhHhhhhhhHHHHHHHHhCcccchhhh
Confidence 2222211 124678999999999999999998877655433
No 5
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.35 E-value=2.6e-12 Score=103.91 Aligned_cols=70 Identities=19% Similarity=0.333 Sum_probs=63.1
Q ss_pred EEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEec
Q 008299 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (570)
Q Consensus 8 ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmG 87 (570)
|+|+|+|+|+.+++.+++++||.+||++|++.||||+++|||++ +|+.|. | ..+|.++|+++|..|+|||
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~l~----d---~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIF---KGKERD----D---AETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEee---CCcccC----c---cCcHHHcCCCCCCEEEEec
Confidence 68999999999999999999999999999999999999999998 676443 2 2568889999999999998
No 6
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=8.6e-13 Score=141.56 Aligned_cols=85 Identities=25% Similarity=0.344 Sum_probs=73.2
Q ss_pred eEEEEEEECCEEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 7 MLKVSAIWRGKKYVVE-VNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 7 ~ItItVkwrGk~~~I~-L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
.++|.|+|+|+.|.++ +..++|+.+||++|..+|||+|+|||+++ ||+++++. ..+..++||+|.+|||
T Consensus 3 ~~~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~v---KGg~a~dd-------~~~~al~iKpn~~lmM 72 (473)
T KOG1872|consen 3 SDTVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMV---KGGLAKDD-------VDWGALQIKPNETLMM 72 (473)
T ss_pred cceEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEE---eccccccc-------ccccccccCCCCEEEe
Confidence 5689999999999987 99999999999999999999999999999 89977742 1234578999999999
Q ss_pred eccchhHHHHhhhhhh
Q 008299 86 MGVSEDEVDKVLQNEK 101 (570)
Q Consensus 86 mGS~~~EIe~v~~~a~ 101 (570)
|||+.+.++.+.....
T Consensus 73 mGt~e~~~e~p~~~~~ 88 (473)
T KOG1872|consen 73 MGTAEAGLEPPSLPPT 88 (473)
T ss_pred eccccccccCcccCCc
Confidence 9999998876655444
No 7
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=98.88 E-value=5.7e-09 Score=87.32 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=60.4
Q ss_pred eEEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 7 MLKVSAIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 7 ~ItItVkwr-Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
++.|+|+=. |+++.+++++++||++||.+|++.+|+|+++|||++ +|+.|.+ ..+|.++|+++|..|.|
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~---~Gk~L~D-------~~tL~~ygi~~~stv~l 70 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKK---WYTIFKD-------HISLGDYEIHDGMNLEL 70 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEe---CCcCCCC-------CCCHHHcCCCCCCEEEE
Confidence 467888774 899999999999999999999999999999999998 5765552 25788999999999988
Q ss_pred e
Q 008299 86 M 86 (570)
Q Consensus 86 m 86 (570)
-
T Consensus 71 ~ 71 (73)
T cd01791 71 Y 71 (73)
T ss_pred E
Confidence 4
No 8
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=98.87 E-value=5.2e-09 Score=86.25 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=60.3
Q ss_pred EEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCC--CCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 10 VSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDV--KADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 10 ItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgV--Ppe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
|.|+ +.|++++|+++++.||.+||++|++.+|+ |+++|||++ +|+.|.+ ..+|+++|+++|..|+||
T Consensus 3 i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~---~G~~L~d-------~~~L~~~~i~~~~~i~~~ 72 (77)
T cd01805 3 ITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY---SGKILKD-------DTTLEEYKIDEKDFVVVM 72 (77)
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE---CCEEccC-------CCCHHHcCCCCCCEEEEE
Confidence 4444 67899999999999999999999999999 999999999 6876652 256889999999999998
Q ss_pred ccc
Q 008299 87 GVS 89 (570)
Q Consensus 87 GS~ 89 (570)
.+.
T Consensus 73 ~~~ 75 (77)
T cd01805 73 VSK 75 (77)
T ss_pred Eec
Confidence 764
No 9
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=98.85 E-value=6.9e-09 Score=83.83 Aligned_cols=69 Identities=14% Similarity=0.278 Sum_probs=59.0
Q ss_pred EEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 8 LKVSAIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 8 ItItVkwr-Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
|+|.|++- |+++++.++++.||.+||.+|++.+|+|++.|||++ +|+.|.+ ..+|+++|+++|..|.|+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~L~d-------~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY---SGRVLKD-------DETLSEYKVEDGHTIHLV 70 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCEECCC-------cCcHHHCCCCCCCEEEEE
Confidence 45777765 678999999999999999999999999999999999 6765542 256888999999999886
No 10
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=98.83 E-value=7.7e-09 Score=85.44 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=60.4
Q ss_pred EEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEec
Q 008299 9 KVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (570)
Q Consensus 9 tItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmG 87 (570)
.|.|+ +.|+++++.+.++.||.+||++|++.+|||++.|+|++ +|..|.+ ..+|+++|+++|..|.|+-
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~---~G~~L~d-------~~~L~~~~i~~~~~l~l~~ 71 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLF---KGKALAD-------DKRLSDYSIGPNAKLNLVV 71 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCEECCC-------CCCHHHCCCCCCCEEEEEE
Confidence 34555 57899999999999999999999999999999999999 6776552 2578899999999999985
Q ss_pred cc
Q 008299 88 VS 89 (570)
Q Consensus 88 S~ 89 (570)
.+
T Consensus 72 ~~ 73 (74)
T cd01807 72 RP 73 (74)
T ss_pred cC
Confidence 43
No 11
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=98.82 E-value=6.5e-09 Score=86.66 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=58.0
Q ss_pred EECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEecc
Q 008299 13 IWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMGV 88 (570)
Q Consensus 13 kwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmGS 88 (570)
+..|++++|+++++.||.+||++|+..||||+++|||++ +|..|.+ ..+|+++++.+|..|.||..
T Consensus 4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~---~G~~L~d-------~~tL~~~~i~~g~~l~v~~~ 69 (76)
T cd01800 4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQY---EGIFIKD-------SNSLAYYNLANGTIIHLQLK 69 (76)
T ss_pred ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCEEcCC-------CCcHHHcCCCCCCEEEEEEe
Confidence 348999999999999999999999999999999999999 6765542 25688999999999999865
No 12
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=98.80 E-value=1.1e-08 Score=82.39 Aligned_cols=66 Identities=21% Similarity=0.428 Sum_probs=58.4
Q ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEeccc
Q 008299 14 WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMGVS 89 (570)
Q Consensus 14 wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmGS~ 89 (570)
..|++|+|+++++.||.+||..|++.+++|++.|+|++ +|..|.+ ..+|.++|+++|..|+|+...
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~---~G~~L~d-------~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY---NGKELDD-------DKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE---TTEEEST-------TSBTGGGTTSTTEEEEEEESS
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeee---eeecccC-------cCcHHHcCCCCCCEEEEEEec
Confidence 36889999999999999999999999999999999999 7876642 267899999999999998753
No 13
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=98.80 E-value=1.7e-08 Score=84.79 Aligned_cols=71 Identities=13% Similarity=0.324 Sum_probs=60.4
Q ss_pred EEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 8 LKVSAIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 8 ItItVkwr-Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
++|+|+-. |++++|++++++||++||.+|++.+++++++|||++ +|+.|.+ . +|.++|+++|..|.||
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~---~Gk~L~d-------~-~L~~~gi~~~~~i~l~ 70 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLH---RETRLSS-------G-KLQDLGLGDGSKLTLV 70 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEE---CCcCCCC-------C-cHHHcCCCCCCEEEEE
Confidence 46777764 888999999999999999999999999999999998 6775542 2 5888999999999998
Q ss_pred ccc
Q 008299 87 GVS 89 (570)
Q Consensus 87 GS~ 89 (570)
=+-
T Consensus 71 ~~~ 73 (78)
T cd01804 71 PTV 73 (78)
T ss_pred eec
Confidence 543
No 14
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=98.69 E-value=3.7e-08 Score=77.02 Aligned_cols=64 Identities=22% Similarity=0.370 Sum_probs=54.5
Q ss_pred EEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCc
Q 008299 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (570)
Q Consensus 8 ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~ 81 (570)
+.|.|+|.++++.|+++++.||++||+.|++.+|+|+++|||++ +|+.|.+ ..+|+++|+++|.
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~---~g~~L~d-------~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIY---KGKVLED-------DRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCEECCC-------CCCHHHcCCcCCC
Confidence 46899999988899999999999999999999999999999999 5665442 2567888988763
No 15
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.63 E-value=9.1e-08 Score=80.52 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=60.7
Q ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCcee--eeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRF--IVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 8 ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKL--L~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
++|+|+- +|+++.+++++++||.+||.+|++.+|+|+++||| ++ +|+.|.+ + .+|+++|+++|..|-
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~---~G~~L~D----~---~tL~~~gi~~gs~l~ 72 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLD---SREVLQD----G---VPLVSQGLGPGSTVL 72 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEecc---CCCCCCC----C---CCHHHcCCCCCCEEE
Confidence 5666665 58999999999999999999999999999999999 66 6776652 2 468889999999999
Q ss_pred Eeccc
Q 008299 85 MMGVS 89 (570)
Q Consensus 85 LmGS~ 89 (570)
|+-+.
T Consensus 73 l~~~~ 77 (80)
T cd01792 73 LVVQN 77 (80)
T ss_pred EEEEc
Confidence 88653
No 16
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=98.59 E-value=9.4e-08 Score=78.92 Aligned_cols=68 Identities=13% Similarity=0.238 Sum_probs=56.6
Q ss_pred EEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 9 KVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 9 tItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
+|+..-+|+++.|.++++.||++||..|++.+|||++.|+|++ .|+.|.+ + ..+|.++|+++|..|.|
T Consensus 2 ~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~---~Gk~L~D----~--~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 2 TVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIY---NGRELVD----N--KRLLALYGVKDGDLVVL 69 (71)
T ss_pred EEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEE---CCeEccC----C--cccHHHcCCCCCCEEEE
Confidence 4555557889999999999999999999999999999999999 6765542 2 14577899999988876
No 17
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.59 E-value=1.4e-07 Score=74.66 Aligned_cols=66 Identities=23% Similarity=0.366 Sum_probs=56.4
Q ss_pred EEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEec
Q 008299 12 AIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (570)
Q Consensus 12 Vkwr-Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmG 87 (570)
|+|. |+.+.+.+++++||.+||.+|++.+|+|+++|||++ +|..+. | ..+|.++++++|..|++++
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~---~g~~l~----d---~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY---AGKILK----D---DKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE---CCcCCC----C---cCCHHHCCCCCCCEEEEEE
Confidence 5555 899999999999999999999999999999999998 565443 2 2467889999999999986
No 18
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=98.57 E-value=1.3e-07 Score=78.24 Aligned_cols=68 Identities=12% Similarity=0.212 Sum_probs=57.7
Q ss_pred EEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEec
Q 008299 9 KVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (570)
Q Consensus 9 tItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmG 87 (570)
.|.|+- ++++++.++++.||++||++|++.+|||++.|+|++ .|+.|.+ ..+|++++++++..|-|+-
T Consensus 2 qi~vk~-~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~---~Gk~L~D-------~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01793 2 QLFVRA-QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLL---AGVPLED-------DATLGQCGVEELCTLEVAG 69 (74)
T ss_pred EEEEEC-CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEE---CCeECCC-------CCCHHHcCCCCCCEEEEEE
Confidence 466665 578999999999999999999999999999999999 6765552 2568899999999998863
No 19
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=98.56 E-value=1.6e-07 Score=76.57 Aligned_cols=69 Identities=17% Similarity=0.325 Sum_probs=58.3
Q ss_pred EEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEec
Q 008299 9 KVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (570)
Q Consensus 9 tItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmG 87 (570)
.|.|+- +|+++.|+++++.||++||++|++.+|+|+++|+|++ .|..|.+ ..+|+++++.+|..|.|+-
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~---~g~~L~d-------~~~L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLVL 71 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEE---CCEECCC-------CCcHHHcCCCCCCEEEEEE
Confidence 466664 5889999999999999999999999999999999998 5765442 2568889999999998864
No 20
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=98.53 E-value=2.9e-07 Score=75.12 Aligned_cols=70 Identities=9% Similarity=0.244 Sum_probs=58.2
Q ss_pred EEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEec
Q 008299 9 KVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (570)
Q Consensus 9 tItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmG 87 (570)
.|.|+- +|+++.+.++++.||.+||++|++.+|+|+++|+|++ .|..|.+ ..+|+++++.+|..|.|+-
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~---~g~~L~d-------~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQMND-------DKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEE---CCeEccC-------CCCHHHcCCCCCCEEEEEE
Confidence 345544 6899999999999999999999999999999999998 5664442 2568889999999999875
Q ss_pred c
Q 008299 88 V 88 (570)
Q Consensus 88 S 88 (570)
.
T Consensus 72 ~ 72 (76)
T cd01806 72 A 72 (76)
T ss_pred E
Confidence 3
No 21
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.52 E-value=1.4e-07 Score=77.98 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=56.7
Q ss_pred EECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 13 IWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 13 kwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
.+.|++++|++.++.||++||++|++.+|+|++.|+|++ +|+.|.+ ..+|+++|+++|..|.|+
T Consensus 5 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~---~G~~L~D-------~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01810 5 NDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSF---EGRPMED-------EHPLGEYGLKPGCTVFMN 68 (74)
T ss_pred CCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE---CCEECCC-------CCCHHHcCCCCCCEEEEE
Confidence 467899999999999999999999999999999999998 7876663 256788999999999886
No 22
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=98.51 E-value=1.8e-07 Score=77.52 Aligned_cols=62 Identities=24% Similarity=0.345 Sum_probs=54.6
Q ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 15 RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 15 rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
+|+++++++++++||.+||++|++..|||++.|||++ .|..|.+ + .+|.++++++|..|-||
T Consensus 7 ~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~---~G~~L~D----~---~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 7 TGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFF---SGKLLTD----K---TRLQETKIQKDYVVQVI 68 (70)
T ss_pred CCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE---CCeECCC----C---CCHHHcCCCCCCEEEEE
Confidence 5788999999999999999999999999999999999 6775552 2 56788999999999886
No 23
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=98.48 E-value=3e-07 Score=77.65 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=57.1
Q ss_pred EEEEEEECCEEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 8 LKVSAIWRGKKYVVE-VNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 8 ItItVkwrGk~~~I~-L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
|.|....+.+.++++ +.++.||.+||++|++.+|||++.|||++ +|+.|++ ..+|+++|+++|..|-||
T Consensus 3 I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~---~Gk~L~D-------~~tL~~y~i~~~~~i~l~ 72 (78)
T cd01797 3 IQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFY---RGKQMED-------GHTLFDYNVGLNDIIQLL 72 (78)
T ss_pred EEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEe---CCEECCC-------CCCHHHcCCCCCCEEEEE
Confidence 444444344447885 88999999999999999999999999999 7876653 256888999999999987
Q ss_pred cc
Q 008299 87 GV 88 (570)
Q Consensus 87 GS 88 (570)
=.
T Consensus 73 ~~ 74 (78)
T cd01797 73 VR 74 (78)
T ss_pred Ee
Confidence 43
No 24
>PTZ00044 ubiquitin; Provisional
Probab=98.45 E-value=4.6e-07 Score=74.63 Aligned_cols=63 Identities=22% Similarity=0.478 Sum_probs=54.9
Q ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 14 WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 14 wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
..|+++++.+.++.||.+||++|++.+|||++.|||++ .|..|. |. .+|+++++.+|..|.|+
T Consensus 8 ~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~L~----d~---~~l~~~~i~~~~~i~l~ 70 (76)
T PTZ00044 8 LTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIY---SGKQMS----DD---LKLSDYKVVPGSTIHMV 70 (76)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCEEcc----CC---CcHHHcCCCCCCEEEEE
Confidence 48899999999999999999999999999999999998 576544 22 45788999999999886
No 25
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=98.43 E-value=4.9e-07 Score=73.83 Aligned_cols=65 Identities=23% Similarity=0.370 Sum_probs=56.5
Q ss_pred EECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEec
Q 008299 13 IWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (570)
Q Consensus 13 kwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmG 87 (570)
.+.|+++++.++++.||++||..|++.+|+|++.|+|++ +|..|.+ + .+|+++|+++|..|.|+.
T Consensus 5 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~---~G~~L~d----~---~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 5 TNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIF---AGKELRN----T---TTIQECDLGQQSILHAVR 69 (70)
T ss_pred cCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEE---CCeECCC----C---CcHHHcCCCCCCEEEEEe
Confidence 457889999999999999999999999999999999999 6775542 2 567889999999998863
No 26
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=98.42 E-value=4.7e-07 Score=74.23 Aligned_cols=68 Identities=18% Similarity=0.299 Sum_probs=55.2
Q ss_pred EEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 9 KVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 9 tItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
+|+|+-....++|+++++.||++||++|++.+|+++++|+|++ +|+.|.+ ..+|+++|+++|..|-|+
T Consensus 2 ~i~vk~~~g~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~---~Gk~L~d-------~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 2 KVTVKTPKDKEEIEIAEDASVKDFKEAVSKKFKANQEQLVLIF---AGKILKD-------TDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred EEEEEcCCCCEEEEECCCChHHHHHHHHHHHhCCCHHHEEEEE---CCeEcCC-------CCcHHHcCCCCCCEEEEE
Confidence 3455544334689999999999999999999999999999999 6776552 246889999999998775
No 27
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.42 E-value=3.8e-07 Score=97.57 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=63.5
Q ss_pred EEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhC---CCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 9 KVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTD---VKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 9 tItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTg---VPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
+|+|| +.|++|.|+++++.||.+||.+|++.+| ||++.||||| +|+.|++ ..+|.+++|++|..|+
T Consensus 2 kItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy---~GkiL~D-------d~tL~dy~I~e~~~Iv 71 (378)
T TIGR00601 2 TLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIY---SGKILSD-------DKTVREYKIKEKDFVV 71 (378)
T ss_pred EEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEE---CCEECCC-------CCcHHHcCCCCCCEEE
Confidence 46666 7899999999999999999999999999 9999999999 7887763 2568889999999999
Q ss_pred Eeccchh
Q 008299 85 MMGVSED 91 (570)
Q Consensus 85 LmGS~~~ 91 (570)
+|.+...
T Consensus 72 vmv~k~k 78 (378)
T TIGR00601 72 VMVSKPK 78 (378)
T ss_pred EEeccCC
Confidence 9977643
No 28
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.38 E-value=1.1e-06 Score=74.99 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=60.2
Q ss_pred eEEEEEEECCE---EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceE
Q 008299 7 MLKVSAIWRGK---KYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 7 ~ItItVkwrGk---~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
.|+|.|++... ..+..++.+.||.+||..|+.+||||++.|+|.+...++........| +..+|..+|+++|..|
T Consensus 1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~d--d~~~L~~y~~~dg~~i 78 (87)
T PF14560_consen 1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDD--DDATLGSYGIKDGMRI 78 (87)
T ss_dssp EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSG--SSSBCCHHT-STTEEE
T ss_pred CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCC--CccEeecCCCCCCCEE
Confidence 47899999998 788999999999999999999999999999998742122211112222 2467889999999999
Q ss_pred EEecc
Q 008299 84 RMMGV 88 (570)
Q Consensus 84 mLmGS 88 (570)
.++=+
T Consensus 79 ~V~D~ 83 (87)
T PF14560_consen 79 HVVDT 83 (87)
T ss_dssp EEEE-
T ss_pred EEEeC
Confidence 88644
No 29
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=98.36 E-value=1e-06 Score=78.34 Aligned_cols=70 Identities=14% Similarity=0.259 Sum_probs=59.7
Q ss_pred eEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 7 MLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 7 ~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
.+.|.|+- .|+++.|.+.++.||.+||++|++..|+|++.|||++ .|+.|.+ ..+|++++|++|..|.|
T Consensus 27 ~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~dy~I~~~stL~l 96 (103)
T cd01802 27 TMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIW---NNMELED-------EYCLNDYNISEGCTLKL 96 (103)
T ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEE---CCEECCC-------CCcHHHcCCCCCCEEEE
Confidence 46666665 6889999999999999999999999999999999998 6765552 25688899999999988
Q ss_pred e
Q 008299 86 M 86 (570)
Q Consensus 86 m 86 (570)
+
T Consensus 97 ~ 97 (103)
T cd01802 97 V 97 (103)
T ss_pred E
Confidence 6
No 30
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=98.32 E-value=1.5e-06 Score=74.49 Aligned_cols=70 Identities=19% Similarity=0.104 Sum_probs=54.8
Q ss_pred eEEEEEEE-CCEEEEEEe--CCCCCHHHHHHHHHHHhC-C-CCCCceeeeccCCCCCCCCCCCCccccccccccc--cCC
Q 008299 7 MLKVSAIW-RGKKYVVEV--NSGSPLKELGHELQKLTD-V-KADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVS--IIE 79 (570)
Q Consensus 7 ~ItItVkw-rGk~~~I~L--~~daTV~dLK~~Ie~lTg-V-Ppe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~g--Lk~ 79 (570)
.|+|+|+- ++++++|++ +++.||++||+.|++..+ . ++++||||| +|+.|++. .+|++++ +..
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy---~GKiLkD~-------~tL~~~~~~~~~ 70 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIY---SGKLLPDH-------LKLRDVLRKQDE 70 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEE---cCeeccch-------hhHHHHhhcccC
Confidence 37888888 777866655 899999999999999885 4 579999999 89888742 4566664 677
Q ss_pred CceEEEe
Q 008299 80 GKSIRMM 86 (570)
Q Consensus 80 G~KImLm 86 (570)
|..|=|+
T Consensus 71 ~~tiHLV 77 (79)
T cd01790 71 YHMVHLV 77 (79)
T ss_pred CceEEEE
Confidence 7777665
No 31
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=98.28 E-value=7.3e-07 Score=85.56 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=50.0
Q ss_pred CcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCCccHhHHHHHHHHHHHHHHhh
Q 008299 198 KCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALD 264 (570)
Q Consensus 198 ~~lLGlN~N~Gq~I~LRLRt~d~~~Flp~e~V~~tlLHELaHnvhg~Hd~~F~~L~~~L~~E~~~l~ 264 (570)
+..||-. +.--.|.|=+| ..++|.+.|-++++|||||..|.+|++.||+++.++-+++.+..
T Consensus 138 ksrWGsc-~~~~~I~ln~~----L~~~P~~~idYVvvHEL~Hl~~~nHs~~Fw~~v~~~~Pd~k~~~ 199 (205)
T PF01863_consen 138 KSRWGSC-SSKGNITLNWR----LVMAPPEVIDYVVVHELCHLRHPNHSKRFWALVEKYMPDYKERR 199 (205)
T ss_pred hhccccC-CCCCcEEeecc----cccCCccHHHHHHHHHHHHhccCCCCHHHHHHHHHHCcCHHHHH
Confidence 4468876 43334555443 56889999999999999999999999999999999988887765
No 32
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.14 E-value=3.1e-06 Score=92.34 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=67.7
Q ss_pred eEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 7 ~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
.|.|+||..+.+|+|.++.++||.+||+.|...++++++.|+||| .|++||++ .||...||.+|.+|=|+
T Consensus 15 ~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIf---aGrILKD~-------dTL~~~gI~Dg~TvHLV 84 (493)
T KOG0010|consen 15 LIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIY---AGRILKDD-------DTLKQYGIQDGHTVHLV 84 (493)
T ss_pred eeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeee---cCccccCh-------hhHHHcCCCCCcEEEEE
Confidence 599999999999999999999999999999999999999999999 89999953 56788999999999997
Q ss_pred ccch
Q 008299 87 GVSE 90 (570)
Q Consensus 87 GS~~ 90 (570)
-...
T Consensus 85 ik~~ 88 (493)
T KOG0010|consen 85 IKSQ 88 (493)
T ss_pred eccC
Confidence 6543
No 33
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.12 E-value=4.9e-06 Score=70.08 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=49.8
Q ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccC-CCceEEE
Q 008299 15 RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSII-EGKSIRM 85 (570)
Q Consensus 15 rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk-~G~KImL 85 (570)
+|.+++|+++++.||++||++|++.+||||+.|+| + .|+.+.+ +..+|+++|++ +|..+.|
T Consensus 11 ~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~---~G~~L~d------D~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 11 HTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-V---IGQRLAR------DQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-E---cCCeeCC------CcCCHHHcCCCCCCCEEEE
Confidence 34567899999999999999999999999999999 7 5654431 12568889998 7888876
No 34
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.12 E-value=5.1e-06 Score=74.18 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=53.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEecc
Q 008299 18 KYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMGV 88 (570)
Q Consensus 18 ~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmGS 88 (570)
..++++.+++||.+||.+|.+.++|+|..|||++ .|..|- |+ ..||+++|+.+|+.|+|+-.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~---dG~~L~----DD--srTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSI---DGKILS----DD--CATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeee---cCceec----cC--CccHHhcCCCCCCEEEEEec
Confidence 4567899999999999999999999999999999 565333 33 36789999999999999974
No 35
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.03 E-value=3e-05 Score=66.40 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=55.6
Q ss_pred EEEEEEEC--CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 8 LKVSAIWR--GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 8 ItItVkwr--Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
++|.|+.. ....+..++++.||.+||++|+..||+||+.|+|.+-..+|.... ...+ +..+|..+|+.+|..|-+
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~-~l~~--d~~~L~~y~~~dg~~IhV 78 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVS-KLDD--DDALLGSYPVDDGCRIHV 78 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEe-ecCC--CccEeeeccCCCCCEEEE
Confidence 45666665 445556799999999999999999999999999964211232211 1112 235688899999999987
Q ss_pred ecc
Q 008299 86 MGV 88 (570)
Q Consensus 86 mGS 88 (570)
+=+
T Consensus 79 vD~ 81 (84)
T cd01789 79 IDV 81 (84)
T ss_pred EeC
Confidence 644
No 36
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=97.84 E-value=2.2e-05 Score=66.75 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHhC--CC-CCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 24 NSGSPLKELGHELQKLTD--VK-ADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 24 ~~daTV~dLK~~Ie~lTg--VP-pe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
+.+.||.+||+.|++.++ ++ ++.|||++ +|+.|++ ..+|+++||++|..|.|+
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy---~GKiL~D-------~~TL~dygI~~gstlhLv 73 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIH---CGRKLKD-------DQTLDFYGIQSGSTIHIL 73 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEe---CCcCCCC-------CCcHHHcCCCCCCEEEEE
Confidence 457899999999999984 75 99999999 7887663 267899999999999987
No 37
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=97.75 E-value=2.4e-05 Score=78.51 Aligned_cols=62 Identities=27% Similarity=0.334 Sum_probs=48.9
Q ss_pred CcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCCccHhHHHHHHHHHHHHHHhh
Q 008299 198 KCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALD 264 (570)
Q Consensus 198 ~~lLGlN~N~Gq~I~LRLRt~d~~~Flp~e~V~~tlLHELaHnvhg~Hd~~F~~L~~~L~~E~~~l~ 264 (570)
++.||=..-+| .|.+-+|- .-.|.+.|.++.+|||||..+++|+.+||+++..+-+++.++.
T Consensus 149 k~~WGScs~~~-~i~~~~~l----~~~p~~~i~YVvvHELaHLke~nHs~~Fw~lv~~~~P~~~~~~ 210 (223)
T COG1451 149 KRRWGSCSKAG-EIRFNWRL----VMAPEEVIDYVVVHELAHLKEKNHSKRFWRLVEKYMPDYRAAK 210 (223)
T ss_pred cceeeeecCCC-cEEeehhh----hcCCHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHCCChHHHH
Confidence 44666544455 55554444 3468899999999999999999999999999999988887765
No 38
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=97.62 E-value=8.3e-05 Score=78.14 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=64.4
Q ss_pred EEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhC--CCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 9 KVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTD--VKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 9 tItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTg--VPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
+|+|| ..+.+++|.+.++.||.++|..|+.+.| .|.+.||||+ .|+.|+++ .++.+.+++.++-|.+
T Consensus 2 ~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy---~GkiL~D~-------~tv~Eykv~E~~fiVv 71 (340)
T KOG0011|consen 2 KLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIY---SGKILKDE-------TTVGEYKVKEKKFIVV 71 (340)
T ss_pred eeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeee---cceeccCC-------cchhhhccccCceEEE
Confidence 45565 5677889999999999999999999999 8999999999 79888853 6788999999999999
Q ss_pred eccchh
Q 008299 86 MGVSED 91 (570)
Q Consensus 86 mGS~~~ 91 (570)
|.+...
T Consensus 72 MlsK~k 77 (340)
T KOG0011|consen 72 MLSKDK 77 (340)
T ss_pred EEecCc
Confidence 999875
No 39
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=97.49 E-value=0.00047 Score=59.19 Aligned_cols=71 Identities=15% Similarity=0.400 Sum_probs=59.9
Q ss_pred CeEEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVkwr-Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
..|+|.|+.- |+++.|.+.+++|+..|+.++++..|||+++|+|++ .|..|.+ ..|+.++++..|..|-
T Consensus 10 ~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f---~G~~L~~-------~~T~~~l~m~d~d~I~ 79 (87)
T cd01763 10 EHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF---DGQRIRD-------NQTPDDLGMEDGDEIE 79 (87)
T ss_pred CeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE---CCeECCC-------CCCHHHcCCCCCCEEE
Confidence 4677888776 788899999999999999999999999999999999 6765552 2466788999999887
Q ss_pred Ee
Q 008299 85 MM 86 (570)
Q Consensus 85 Lm 86 (570)
++
T Consensus 80 v~ 81 (87)
T cd01763 80 VM 81 (87)
T ss_pred EE
Confidence 65
No 40
>PLN02560 enoyl-CoA reductase
Probab=97.11 E-value=0.0012 Score=69.42 Aligned_cols=73 Identities=21% Similarity=0.359 Sum_probs=54.1
Q ss_pred EEEEE-CCEEE---EEEeCCCCCHHHHHHHHHHHhCC-CCCCceeeecc----CCCCCCCCCCCCccccccccccccCCC
Q 008299 10 VSAIW-RGKKY---VVEVNSGSPLKELGHELQKLTDV-KADTMRFIVPQ----NKGSKLLSPFSDEHSSLSLQEVSIIEG 80 (570)
Q Consensus 10 ItVkw-rGk~~---~I~L~~daTV~dLK~~Ie~lTgV-Ppe~QKLL~pk----~KG~~Lk~pfsD~~~~ltLse~gLk~G 80 (570)
|+|+- +|+.+ +|++++++||+|||.+|++..++ ++++|+|.+.. .+|..++ | ..+|++.|+++|
T Consensus 3 I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~----d---~ktL~d~gv~~g 75 (308)
T PLN02560 3 VTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLD----D---SKSLKDYGLGDG 75 (308)
T ss_pred EEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccC----C---CCCHHhcCCCCC
Confidence 45553 36666 79999999999999999999997 89999999742 1232333 1 246788999999
Q ss_pred ceEEE--eccc
Q 008299 81 KSIRM--MGVS 89 (570)
Q Consensus 81 ~KImL--mGS~ 89 (570)
..|.+ +|..
T Consensus 76 stLy~kDLGpQ 86 (308)
T PLN02560 76 GTVVFKDLGPQ 86 (308)
T ss_pred ceEEEEeCCCc
Confidence 98877 4543
No 41
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=96.94 E-value=0.0034 Score=51.12 Aligned_cols=69 Identities=16% Similarity=0.348 Sum_probs=56.0
Q ss_pred EEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCC-CCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 8 LKVSAIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKA-DTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 8 ItItVkwr-Gk~~~I~L~~daTV~dLK~~Ie~lTgVPp-e~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
|+|.|+.. |+.+.+.+.++.|+..|.+.+++..|+|+ +..+|++ +|..|.. ..|+.++|+..|-.|-+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~f---dG~~L~~-------~~T~~~~~ied~d~Idv 70 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIF---DGKRLDP-------NDTPEDLGIEDGDTIDV 70 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEE---TTEEE-T-------TSCHHHHT-STTEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEE---CCEEcCC-------CCCHHHCCCCCCCEEEE
Confidence 56777776 66788999999999999999999999999 9999999 7875542 25678889999887765
Q ss_pred e
Q 008299 86 M 86 (570)
Q Consensus 86 m 86 (570)
+
T Consensus 71 ~ 71 (72)
T PF11976_consen 71 I 71 (72)
T ss_dssp E
T ss_pred E
Confidence 4
No 42
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=96.80 E-value=0.0044 Score=44.93 Aligned_cols=63 Identities=24% Similarity=0.438 Sum_probs=49.0
Q ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEec
Q 008299 15 RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (570)
Q Consensus 15 rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmG 87 (570)
+|+...+.++++.|+.+|+..|.+.+|+++..|+|++ .|..+... ..+...++..|..|.++.
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~---~~~~~~~~-------~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLV---NGKILPDS-------LTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEE---CCeECCCC-------CcHHHcCCCCCCEEEEEe
Confidence 4778889999999999999999999999999999998 45433321 112345778888888763
No 43
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=96.75 E-value=0.0031 Score=52.83 Aligned_cols=69 Identities=14% Similarity=0.238 Sum_probs=50.2
Q ss_pred EEEEEECC-EEEE-EEe-CCCCCHHHHHHHHHHHhCC-CCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 9 KVSAIWRG-KKYV-VEV-NSGSPLKELGHELQKLTDV-KADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 9 tItVkwrG-k~~~-I~L-~~daTV~dLK~~Ie~lTgV-Ppe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
.|.++-++ +.+. +.+ ++++||.+||.+|++..+. ++++|+|... .+|+.|++ . .+|++.|++.|..|.
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~-~~g~~L~d----~---~tL~~~gv~~g~~ly 73 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLE-PKGKSLKD----D---DTLVDLGVGAGATLY 73 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeC-CCCcccCC----c---ccHhhcCCCCCCEEE
Confidence 45566666 5543 333 6889999999999999864 8999999753 27776653 1 357888999998765
Q ss_pred E
Q 008299 85 M 85 (570)
Q Consensus 85 L 85 (570)
+
T Consensus 74 v 74 (77)
T cd01801 74 V 74 (77)
T ss_pred E
Confidence 3
No 44
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=96.72 E-value=0.0011 Score=61.91 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=30.4
Q ss_pred cchHHHHHHHHHHhhhhccC------CccHhHHHHHHHHH
Q 008299 224 RKYESIKKTLLHELAHMVYS------EHDANFYGLDKQLN 257 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnvhg------~Hd~~F~~L~~~L~ 257 (570)
.|.+.|..|++|||||.... +|++.||+++.++.
T Consensus 54 ~~~~~l~~~l~HEm~H~~~~~~g~~~~Hg~~f~~~~~~~~ 93 (146)
T smart00731 54 NGRDRLRETLLHELCHAALYLFGRGYGHGDEWKRWMRQVN 93 (146)
T ss_pred ccHHHHHhhHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHc
Confidence 46789999999999999987 99999999987774
No 45
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=96.46 E-value=0.01 Score=50.95 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=42.2
Q ss_pred CCCeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceE
Q 008299 4 LGSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 4 ~~~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
|+..+-|.|.-.--.+-|++++++|+.+|+++|++.+++|+..|.|..-+.+...+.. + ...+|+++||+-|.=|
T Consensus 1 ~~~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s---~--~~~tl~~lglkHGdml 75 (80)
T PF11543_consen 1 MASSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKS---S--DSKTLSSLGLKHGDML 75 (80)
T ss_dssp -----EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS------TT-CCCCT---TT-EE
T ss_pred CCccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCccccc---C--CcCCHHHcCCCCccEE
Confidence 4556777887777788999999999999999999999999999988653222222221 1 2367888999998755
Q ss_pred E
Q 008299 84 R 84 (570)
Q Consensus 84 m 84 (570)
-
T Consensus 76 y 76 (80)
T PF11543_consen 76 Y 76 (80)
T ss_dssp E
T ss_pred E
Confidence 4
No 46
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0039 Score=51.48 Aligned_cols=62 Identities=10% Similarity=0.328 Sum_probs=48.0
Q ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 14 WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 14 wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
.-||.++|++.+..+|.-+|+.+++.-||||..|+|+| .|+.+.+ .++-..+++.-|+-|-|
T Consensus 8 Lt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~---~gkqm~D-------D~tA~~Y~~~~GSVlHl 69 (70)
T KOG0005|consen 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---AGKQMND-------DKTAAHYNLLGGSVLHL 69 (70)
T ss_pred eccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhh---ccccccc-------cccHHHhhhccceeEee
Confidence 46888999999999999999999999999999999999 5764432 13444455555655543
No 47
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.0023 Score=58.14 Aligned_cols=67 Identities=18% Similarity=0.338 Sum_probs=55.3
Q ss_pred EEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 9 KVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 9 tItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
-|.+.+-||+.++++.++.||..+|+.|...-|+||+.|.|++ .|+.|-+ .-|++.+|+..-.+|.+
T Consensus 3 ~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~---~~k~LED-------~~Tla~Y~i~~~~Tl~~ 69 (128)
T KOG0003|consen 3 IFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLADYNIQKESTLHL 69 (128)
T ss_pred EEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHh---ccccccc-------CCcccccCccchhhhhh
Confidence 4788999999999999999999999999999999999999998 5665542 25667777766555543
No 48
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=96.04 E-value=0.015 Score=53.54 Aligned_cols=60 Identities=12% Similarity=0.191 Sum_probs=48.3
Q ss_pred EEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCcccccccccccc
Q 008299 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSI 77 (570)
Q Consensus 8 ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gL 77 (570)
+-|.|++++.+|=++..++.||.+||..|+.++.+||+.|+|+ |...+.. +..||++.|+
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~----kd~qvLe------D~kTL~d~g~ 62 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLY----KDDQLLD------DGKTLGDCGF 62 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheee----cCceeec------ccccHHHcCc
Confidence 4577888888888899999999999999999999999999999 2433332 2367887776
No 49
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=95.80 E-value=0.0089 Score=54.74 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=37.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHh-----CCC--CCCceeeeccCCCCCCCCCCCCccccccccccc
Q 008299 20 VVEVNSGSPLKELGHELQKLT-----DVK--ADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVS 76 (570)
Q Consensus 20 ~I~L~~daTV~dLK~~Ie~lT-----gVP--pe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~g 76 (570)
.+.+.+++||.+||+.|++.. ++| ++.||||| .|+.|.+ ..||++++
T Consensus 19 p~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIy---sGKiLeD-------~~TL~d~~ 72 (113)
T cd01814 19 PKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLIS---AGKILEN-------SKTVGECR 72 (113)
T ss_pred ccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEe---CCeecCC-------CCcHHHhC
Confidence 467889999999999999555 455 99999999 7887774 25566665
No 50
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=95.50 E-value=0.013 Score=54.34 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=40.5
Q ss_pred cccccc-cCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhcc--------CCccHhHHHHHHHHHH
Q 008299 199 CVLGFN-KNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVY--------SEHDANFYGLDKQLNQ 258 (570)
Q Consensus 199 ~lLGlN-~N~Gq~I~LRLRt~d~~~Flp~e~V~~tlLHELaHnvh--------g~Hd~~F~~L~~~L~~ 258 (570)
..+|.- .+.+....|+|-.. .....+.+.+..||+|||||... .+|+..|.++...|..
T Consensus 30 ~~~G~~~~~~~~~~~I~ls~~-~~~~~~~~~~~~tL~HEm~H~~~~~~~~~~~~~Hg~~fk~~~~~ig~ 97 (157)
T PF10263_consen 30 RTAGRCRYKRRSPCEIRLSPK-LLDRNPEEELIDTLLHEMAHAAAYVFGGGRRRGHGKEFKQWARRIGA 97 (157)
T ss_pred CceEEEEECCCCceEEEECHH-HHHhhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCHHHHHHHHHHCC
Confidence 456642 33332455555331 11126789999999999999876 6999999999888764
No 51
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=95.02 E-value=0.048 Score=45.98 Aligned_cols=72 Identities=17% Similarity=0.297 Sum_probs=46.9
Q ss_pred eEEEEEEECC-EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCce----eeeccCCCCCCCCCCCCccccccccccccCCCc
Q 008299 7 MLKVSAIWRG-KKYVVEVNSGSPLKELGHELQKLTDVKADTMR----FIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (570)
Q Consensus 7 ~ItItVkwrG-k~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QK----LL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~ 81 (570)
.+.|+|.++. +.+++.+|.+.||++|-..|-+.++.+..... +-+-+.+|..|. ...+|+++|+.+|-
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~-------~~~tL~~~gV~dGd 74 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLD-------PDQTLADAGVRDGD 74 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEE-------TTSBCGGGT--TT-
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccC-------CcCcHhHcCCCCCC
Confidence 5789999974 99999999999999999999999997554432 222224565333 13678999999999
Q ss_pred eEEE
Q 008299 82 SIRM 85 (570)
Q Consensus 82 KImL 85 (570)
.++|
T Consensus 75 ~L~L 78 (79)
T PF08817_consen 75 VLVL 78 (79)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8887
No 52
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=94.90 E-value=0.027 Score=54.08 Aligned_cols=61 Identities=20% Similarity=0.413 Sum_probs=51.3
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 16 Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
|++.++++.++.||..+|+.|++..|||++.|.|++ -|..|-+ ..+|++++|...+.|-|+
T Consensus 10 ~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlif---ag~qLed-------grtlSDY~Iqkestl~l~ 70 (156)
T KOG0004|consen 10 GKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLV 70 (156)
T ss_pred ccceeeeecccccHHHHHHhhhcccCCCchhhhhhh---hhccccc-------CCccccccccccceEEEE
Confidence 457788999999999999999999999999999999 4665542 267889999888877764
No 53
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.067 Score=63.70 Aligned_cols=66 Identities=18% Similarity=0.349 Sum_probs=55.4
Q ss_pred EEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 10 VSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 10 ItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
|+|| ...++++|.+....||+.||..|.+.++|+.++|+||| .|..|.+ ..+++++++ .||.|-|+
T Consensus 5 v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~---~grvl~~-------~k~vq~~~v-dgk~~hlv 71 (1143)
T KOG4248|consen 5 VLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIY---QGRVLQD-------DKKVQEYNV-DGKVIHLV 71 (1143)
T ss_pred eeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeee---cceeecc-------chhhhhccC-CCeEEEee
Confidence 5554 56778999999999999999999999999999999999 6766653 267889998 88888665
No 54
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.00 E-value=0.26 Score=37.97 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=54.1
Q ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEeccc
Q 008299 14 WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMGVS 89 (570)
Q Consensus 14 wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmGS~ 89 (570)
..|+.+.+.+.+..++..+|.+|+...|++++.|.+.+ .|..|.+ ..++...+|..+..+-|....
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~---~~~~l~d-------~~~l~~~~i~~~~~~~l~~~~ 72 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIF---GGKPLED-------GRTLADYNIQEGSTLHLVLSL 72 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEE---CCEECcC-------CCcHHHhCCCCCCEEEEEEec
Confidence 78999999999999999999999999999999999887 4544432 256777888888888776543
No 55
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=92.21 E-value=0.27 Score=49.59 Aligned_cols=83 Identities=19% Similarity=0.305 Sum_probs=61.1
Q ss_pred eEEEEEEECCEEE--EEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCC-CCCCCCCCCccccccccccccCCCceE
Q 008299 7 MLKVSAIWRGKKY--VVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKG-SKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 7 ~ItItVkwrGk~~--~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG-~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
++.|.|++.-..+ +..++.+.||.+||.+|+-+||++++.++|-+- +| .+.....+++. ..|.-++...|.+|
T Consensus 1 ~v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~--~~~d~~~~~lsn~d--~~lg~~~~~Dg~ri 76 (234)
T KOG3206|consen 1 MVRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELY--DGDDKKVSALSNED--ADLGFYKVEDGLRI 76 (234)
T ss_pred CeEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEE--cCCCceeeeccCCc--ccccccCCCCceEE
Confidence 3677888877774 457899999999999999999999999999653 23 11122233433 33555778899999
Q ss_pred EEeccchhHH
Q 008299 84 RMMGVSEDEV 93 (570)
Q Consensus 84 mLmGS~~~EI 93 (570)
-++-+...-+
T Consensus 77 hviD~~~~~~ 86 (234)
T KOG3206|consen 77 HVIDSNAQSI 86 (234)
T ss_pred EEEecCcccc
Confidence 9998877666
No 56
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=91.77 E-value=0.67 Score=38.50 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=40.9
Q ss_pred eEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeee
Q 008299 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV 51 (570)
Q Consensus 7 ~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~ 51 (570)
+++|.|.|++..+.|.++.+.|..+|..+|.+.++.+....+|-|
T Consensus 1 ~~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y 45 (81)
T smart00666 1 TVDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKY 45 (81)
T ss_pred CccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEE
Confidence 368999999999999999999999999999999999877777766
No 57
>PRK04351 hypothetical protein; Provisional
Probab=91.67 E-value=0.18 Score=48.15 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHhhhhc-------cCCccHhHHHHHHHH
Q 008299 226 YESIKKTLLHELAHMV-------YSEHDANFYGLDKQL 256 (570)
Q Consensus 226 ~e~V~~tlLHELaHnv-------hg~Hd~~F~~L~~~L 256 (570)
.+.+..|+.|||||.. +.+||..|..++.++
T Consensus 58 ~~~l~~vv~HElcH~~~~~~g~g~~h~g~~fk~~~~~v 95 (149)
T PRK04351 58 LEELIGIIKHELCHYHLHLEGKGYQHRDRDFKELLKQV 95 (149)
T ss_pred HHHHHhhHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHh
Confidence 6889999999999972 456889998876654
No 58
>PRK04860 hypothetical protein; Provisional
Probab=90.56 E-value=0.26 Score=47.66 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHhhhhc-c---C---CccHhHHHHHHHH
Q 008299 225 KYESIKKTLLHELAHMV-Y---S---EHDANFYGLDKQL 256 (570)
Q Consensus 225 p~e~V~~tlLHELaHnv-h---g---~Hd~~F~~L~~~L 256 (570)
+.+.+..|+.|||||.+ | | +||..|..++.++
T Consensus 59 ~~~~l~~~v~HEl~H~~~~~~~g~~~~Hg~ewk~lm~~v 97 (160)
T PRK04860 59 QQAFIDEVVPHELAHLLVYQLFGRVAPHGKEWQWMMESV 97 (160)
T ss_pred cHHHHHhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 56889999999999975 2 3 9999988887663
No 59
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=89.68 E-value=1.3 Score=38.37 Aligned_cols=76 Identities=17% Similarity=0.302 Sum_probs=55.8
Q ss_pred EEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEec
Q 008299 9 KVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (570)
Q Consensus 9 tItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmG 87 (570)
.|+|+ |++...++.++|..+|..+|++|....+.+- .|+|-+--.-|..+. . .+..+|+..||=....|.||-
T Consensus 2 qVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rql--L---~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 2 QVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQL--L---SSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred EEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCccccc--c---cccccHhhhcceeccEEEEEe
Confidence 46664 6777788999999999999999999999987 888866111122111 1 123578889998899999987
Q ss_pred cch
Q 008299 88 VSE 90 (570)
Q Consensus 88 S~~ 90 (570)
|-.
T Consensus 76 T~p 78 (80)
T cd01811 76 TFP 78 (80)
T ss_pred cCC
Confidence 643
No 60
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=88.67 E-value=1.4 Score=38.37 Aligned_cols=36 Identities=6% Similarity=0.141 Sum_probs=34.0
Q ss_pred EEEEEEECCEEEEEEeCC--CCCHHHHHHHHHHHhCCC
Q 008299 8 LKVSAIWRGKKYVVEVNS--GSPLKELGHELQKLTDVK 43 (570)
Q Consensus 8 ItItVkwrGk~~~I~L~~--daTV~dLK~~Ie~lTgVP 43 (570)
|+|.++|+|.+..|.+++ +.|..+|+++|...++++
T Consensus 1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 589999999999999999 669999999999999999
No 61
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=88.40 E-value=1.1 Score=41.00 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=38.6
Q ss_pred CCE-EEEEEeCCCCCHHHHHHHHHHHh-------CCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCce
Q 008299 15 RGK-KYVVEVNSGSPLKELGHELQKLT-------DVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKS 82 (570)
Q Consensus 15 rGk-~~~I~L~~daTV~dLK~~Ie~lT-------gVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~K 82 (570)
.|+ ...+.++++.||++||+.|.... =..++..|||+ .|++|.+ ..+|.++.+..|..
T Consensus 11 ~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~---~GriL~d-------~~tL~~~~~~~~~~ 76 (111)
T PF13881_consen 11 DGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIY---AGRILED-------NKTLSDCRLPSGET 76 (111)
T ss_dssp TS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEE---TTEEE-S-------SSBTGGGT--TTSE
T ss_pred CCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEe---CCeecCC-------cCcHHHhCCCCCCC
Confidence 566 78899999999999999998743 11335579998 6876652 25677777766653
No 62
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=88.12 E-value=0.74 Score=49.17 Aligned_cols=50 Identities=28% Similarity=0.329 Sum_probs=40.7
Q ss_pred EEEEEECCEE--E--EEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCC
Q 008299 9 KVSAIWRGKK--Y--VVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLS 61 (570)
Q Consensus 9 tItVkwrGk~--~--~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~ 61 (570)
.+-|.++|+. | .|.++.+..|.+||+-++.++|||++.-|+|+ -|+.|.+
T Consensus 2 ~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viF---aGKeLs~ 55 (446)
T KOG0006|consen 2 IVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIF---AGKELSN 55 (446)
T ss_pred eEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEE---ecccccc
Confidence 3567787654 3 45778999999999999999999999999999 5775553
No 63
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=88.08 E-value=1.9 Score=35.76 Aligned_cols=45 Identities=9% Similarity=0.223 Sum_probs=41.7
Q ss_pred eEEEEEEECCEEEE-EEeCCCCCHHHHHHHHHHHhCCCCCCceeee
Q 008299 7 MLKVSAIWRGKKYV-VEVNSGSPLKELGHELQKLTDVKADTMRFIV 51 (570)
Q Consensus 7 ~ItItVkwrGk~~~-I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~ 51 (570)
++.|.++|++..+. +.++.+.|..+|...|.+.++.+...-+|-|
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y 46 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKY 46 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEe
Confidence 58899999999999 9999999999999999999999977777777
No 64
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=87.10 E-value=1.4 Score=38.04 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=34.2
Q ss_pred EEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 008299 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVK 43 (570)
Q Consensus 8 ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVP 43 (570)
++|.++|+|..+.|.++++.+..+|+++|.+.+++.
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~ 36 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLD 36 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 579999999999999999999999999999999985
No 65
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=86.70 E-value=1.3 Score=37.05 Aligned_cols=65 Identities=12% Similarity=0.201 Sum_probs=39.5
Q ss_pred EEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 11 SAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 11 tVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
.|.++++.+.|.+.++.|+.++=++.++.+|+.++.=-|.. +++. .+ ..+.+.-+||.+|.|+.|
T Consensus 1 vi~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h---~~k~-ld------lslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 1 VICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKH---NNKP-LD------LSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp EE-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEE---TTEE-ES------SS-BHHHH---SS-EEEE
T ss_pred CCccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEE---CCEE-ec------cccceeecCCCCCCEEeC
Confidence 47899999999999999999999999999999999666665 3332 21 113344478999999876
No 66
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=84.68 E-value=1.8 Score=37.84 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=36.5
Q ss_pred EEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 008299 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADT 46 (570)
Q Consensus 8 ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~ 46 (570)
++++|+|+|.+.-|.++.+.|...|+++|+.++++|+..
T Consensus 1 ~~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~ 39 (82)
T cd06397 1 TQFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIK 39 (82)
T ss_pred CeEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhH
Confidence 368899999999999999999999999999999999885
No 67
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=84.65 E-value=1 Score=43.59 Aligned_cols=30 Identities=33% Similarity=0.523 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhhc-------cCCccHhHHHHHHHH
Q 008299 227 ESIKKTLLHELAHMV-------YSEHDANFYGLDKQL 256 (570)
Q Consensus 227 e~V~~tlLHELaHnv-------hg~Hd~~F~~L~~~L 256 (570)
+.|..++.|||||.. +-+||..|..|+.++
T Consensus 59 ~f~~~vV~HELaHl~ly~~~gr~~phg~ewk~lm~qV 95 (156)
T COG3091 59 DFIEQVVPHELAHLHLYQEFGRYKPHGKEWKLLMQQV 95 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHh
Confidence 579999999999974 349999999988665
No 68
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=84.58 E-value=3 Score=36.41 Aligned_cols=45 Identities=11% Similarity=0.184 Sum_probs=41.4
Q ss_pred EEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeecc
Q 008299 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQ 53 (570)
Q Consensus 8 ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk 53 (570)
..|.|+|.+ ++.|.++++.+..+|.+.|.+.+.+|++..+|=|..
T Consensus 3 ~vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 3 YVVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred eEEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 568899998 889999999999999999999999999999998843
No 69
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=83.36 E-value=8.9 Score=32.22 Aligned_cols=75 Identities=13% Similarity=0.190 Sum_probs=52.4
Q ss_pred CeEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
....|.|. -+|+.....++++.||.++.+-|....+.....=.|+.+- +. ..+.+.....||.++|+.+...|+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~--Pr---k~l~~~d~~~tL~e~gL~p~~~l~ 77 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPF--PR---RTFTKDDYSKTLLELALLPSSTLV 77 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCC--CC---cCCccccccCCHHHCCCCCceEEE
Confidence 35677777 4677788899999999999999977667666666776421 11 122332223689999998888777
Q ss_pred E
Q 008299 85 M 85 (570)
Q Consensus 85 L 85 (570)
|
T Consensus 78 v 78 (80)
T smart00166 78 L 78 (80)
T ss_pred E
Confidence 5
No 70
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=82.46 E-value=2.8 Score=37.97 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=40.3
Q ss_pred EEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeee
Q 008299 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV 51 (570)
Q Consensus 8 ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~ 51 (570)
+-|.|+.++.+|-++..++.||-+||..|+.++--|+.+|+|.-
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~k 46 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYK 46 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheee
Confidence 45788888888889999999999999999999999999999974
No 71
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=81.65 E-value=3.8 Score=33.73 Aligned_cols=44 Identities=11% Similarity=0.192 Sum_probs=37.1
Q ss_pred EEEEEEECCEEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCceeee
Q 008299 8 LKVSAIWRGKKYVVEVN-SGSPLKELGHELQKLTDVKADTMRFIV 51 (570)
Q Consensus 8 ItItVkwrGk~~~I~L~-~daTV~dLK~~Ie~lTgVPpe~QKLL~ 51 (570)
+.|.|+|+|..+.+.++ .+.|..+|...|.+.++.+...-+|-+
T Consensus 1 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y 45 (81)
T cd05992 1 VRVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKY 45 (81)
T ss_pred CcEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEe
Confidence 46899999999999998 999999999999999999873333333
No 72
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=80.82 E-value=1.5 Score=44.05 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=40.8
Q ss_pred cEEEEEeec-CC-C--CCccchHHHHHHHHHHhhhhcc-CCccHhHHHHHHHHHHHHHHhhh
Q 008299 209 EEISLRLRT-DD-L--KGFRKYESIKKTLLHELAHMVY-SEHDANFYGLDKQLNQEAVALDW 265 (570)
Q Consensus 209 q~I~LRLRt-~d-~--~~Flp~e~V~~tlLHELaHnvh-g~Hd~~F~~L~~~L~~E~~~l~~ 265 (570)
-+|.+-++. .. . +.+. .+|.++|.|||+||+. .+++..++.|...|- ++.++..
T Consensus 74 ~~I~~S~~~i~~~~~~~~~~--~Ei~Gvl~HE~~H~~Q~~~~~~~P~~liEGIA-DyVRl~a 132 (205)
T PF04450_consen 74 KEIHFSARYIAKYPADGDVR--DEIIGVLYHEMVHCWQWDGRGTAPGGLIEGIA-DYVRLKA 132 (205)
T ss_pred cEEEEeHHHHhhcccccchH--HHHHHHHHHHHHHHhhcCCCCCCChhheecHH-HHHHHHc
Confidence 778888777 11 1 2333 7899999999999996 569999999998884 5555553
No 73
>KOG3854 consensus SPRT-like metalloprotease [Function unknown]
Probab=79.91 E-value=1.3 Score=49.30 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=27.9
Q ss_pred CccEEEEEeecCCCCCccchHHHHHHHHHHhhhh-------ccCCccHhHHH
Q 008299 207 HGEEISLRLRTDDLKGFRKYESIKKTLLHELAHM-------VYSEHDANFYG 251 (570)
Q Consensus 207 ~Gq~I~LRLRt~d~~~Flp~e~V~~tlLHELaHn-------vhg~Hd~~F~~ 251 (570)
+-.+|+|-+--- ---+.|+.||+|||||- .+..|++.|..
T Consensus 334 r~A~IeLs~kV~-----tTAERir~TLiHEmCHaAaWv~dr~e~gHGd~wKr 380 (505)
T KOG3854|consen 334 RYAKIELSDKVC-----TTAERIRDTLIHEMCHAAAWVFDREELGHGDNWKR 380 (505)
T ss_pred ceeEEEehhhhh-----hHHHHHHHHHHHHHHHHHHhhccccccCcchHHHH
Confidence 346677655331 11278999999999994 27899998754
No 74
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.48 E-value=1.8 Score=36.66 Aligned_cols=59 Identities=20% Similarity=0.349 Sum_probs=43.4
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCC-CCCCCCCCccccccccccccCCCceEEE
Q 008299 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGS-KLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 16 Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~-~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
||+..|...++.||+|||..|+..||-.++..-|= |.. ..+ | ..+|+..-+..|..+-|
T Consensus 11 GKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~----k~~~i~k----d---~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 11 GKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLK----KWYTIFK----D---HITLSDYEIHDGMNLEL 70 (73)
T ss_pred CceEEEEeCCcccccCHHHHHHHhhCCChhHhHHH----hhhhhhh----c---ccceeeEEeccCccEEE
Confidence 77888999999999999999999999998764331 332 222 2 25677777777776654
No 75
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=77.42 E-value=16 Score=30.39 Aligned_cols=72 Identities=14% Similarity=0.298 Sum_probs=53.8
Q ss_pred CeEEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-ceee--eccCCCCCCCCCCCCccccccccccccCCCc
Q 008299 6 SMLKVSAIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKADT-MRFI--VPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (570)
Q Consensus 6 ~~ItItVkwr-Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~-QKLL--~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~ 81 (570)
..+.|.|.+- |+.+.-.+..+.||.+|..-|......+... =.|+ +|+ - ++.+.. ..+|.++|+.++.
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr--~-----~l~~~~-~~tl~e~~l~p~~ 76 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPR--R-----ELTDED-SKTLEEAGLLPSA 76 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSST--E-----ECCSTT-TSBTCCCTTSSCE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCC--c-----CCCccc-cccHHHhcCCCCe
Confidence 4678888875 5677889999999999999999999888875 4565 331 1 222222 3688999999998
Q ss_pred eEEE
Q 008299 82 SIRM 85 (570)
Q Consensus 82 KImL 85 (570)
.|++
T Consensus 77 ~l~v 80 (82)
T PF00789_consen 77 TLIV 80 (82)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 76
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=76.12 E-value=9.6 Score=33.72 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=36.9
Q ss_pred EEEEEEECCEEEEEEeCC-----CCCHHHHHHHHHHHhCCCCCCceee
Q 008299 8 LKVSAIWRGKKYVVEVNS-----GSPLKELGHELQKLTDVKADTMRFI 50 (570)
Q Consensus 8 ItItVkwrGk~~~I~L~~-----daTV~dLK~~Ie~lTgVPpe~QKLL 50 (570)
+.|+|+|+|..+-|.++. +.+..+|+++|.+++++++...=.|
T Consensus 1 l~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l 48 (91)
T cd06398 1 LVVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSL 48 (91)
T ss_pred CEEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEE
Confidence 368999999999999985 7999999999999999987554444
No 77
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=74.59 E-value=3.2 Score=42.66 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=20.5
Q ss_pred cchHHHHHHHHHHhhhhccCCccHh
Q 008299 224 RKYESIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnvhg~Hd~~ 248 (570)
+.-+++..+++|||+|+.+++.=.+
T Consensus 191 ~~~~el~~il~HEl~Hikr~D~~~~ 215 (299)
T PF05569_consen 191 LSEEELRAILLHELAHIKRRDLLWK 215 (299)
T ss_pred cCHHHHHHHHHHHHHHHHCCChHHH
Confidence 4668899999999999998875443
No 78
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=74.34 E-value=3.2 Score=35.65 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=17.5
Q ss_pred chHHHHHHHHHHhhhhccCCcc
Q 008299 225 KYESIKKTLLHELAHMVYSEHD 246 (570)
Q Consensus 225 p~e~V~~tlLHELaHnvhg~Hd 246 (570)
+...+..++.|||+|.+++...
T Consensus 21 ~~~~~~~~l~HE~~H~~~~~~~ 42 (128)
T PF13485_consen 21 DEDWLDRVLAHELAHQWFGNYF 42 (128)
T ss_pred CHHHHHHHHHHHHHHHHHHHHc
Confidence 4566779999999999977554
No 79
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=73.56 E-value=2.6 Score=42.79 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=24.5
Q ss_pred CCccchHHHHHHHHHHhhhhccCCccHhH
Q 008299 221 KGFRKYESIKKTLLHELAHMVYSEHDANF 249 (570)
Q Consensus 221 ~~Flp~e~V~~tlLHELaHnvhg~Hd~~F 249 (570)
....++..+..||.|||.||.-++||..-
T Consensus 159 ~~~~~~~~~a~t~AHElGHnlGm~HD~~~ 187 (244)
T cd04270 159 GKRVPTKESDLVTAHELGHNFGSPHDPDI 187 (244)
T ss_pred CCccchhHHHHHHHHHHHHhcCCCCCCCC
Confidence 44567777889999999999999999864
No 80
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=73.21 E-value=20 Score=30.36 Aligned_cols=71 Identities=11% Similarity=0.204 Sum_probs=49.7
Q ss_pred eEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeee--ccCCCCCCCCCCCCccccccccccccCCCceE
Q 008299 7 MLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV--PQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 7 ~ItItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~--pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
...|.|. .+|+...-.++.+.||.++.+-|+...+.. ..-+|+- |+ ..|.++....||.++||.+...|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPr-------k~~~~~d~~~TL~elgL~Psa~L 75 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPR-------KVFTEDDMEKPLQELGLVPSAVL 75 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCC-------eECCcccccCCHHHCCCCCceEE
Confidence 3566776 678888889999999999999998766543 3345552 31 12332222468999999988877
Q ss_pred EE
Q 008299 84 RM 85 (570)
Q Consensus 84 mL 85 (570)
+|
T Consensus 76 ~v 77 (79)
T cd01772 76 IV 77 (79)
T ss_pred EE
Confidence 65
No 81
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=72.52 E-value=9.2 Score=33.80 Aligned_cols=42 Identities=7% Similarity=0.186 Sum_probs=37.6
Q ss_pred eEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeee
Q 008299 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV 51 (570)
Q Consensus 7 ~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~ 51 (570)
.|+|.|+++|..+.|.++++.+..+|..+|.+.+++. |.|-+
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~---~~~~i 43 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK---RRLKI 43 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC---CceEE
Confidence 4889999999999999999999999999999999994 55544
No 82
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=71.93 E-value=3.7 Score=34.88 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=19.7
Q ss_pred cchHHHHHHHHHHhhhhccCCccHhH
Q 008299 224 RKYESIKKTLLHELAHMVYSEHDANF 249 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnvhg~Hd~~F 249 (570)
++...-+-|++|||+|.....+...+
T Consensus 37 ~~~~~~~f~laHELgH~~~~~~~~~~ 62 (122)
T PF06114_consen 37 LSPERQRFTLAHELGHILLHHGDETF 62 (122)
T ss_dssp S-HHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhhccccc
Confidence 45567788999999999988877653
No 83
>PRK04897 heat shock protein HtpX; Provisional
Probab=69.17 E-value=3.3 Score=43.36 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=19.4
Q ss_pred cchHHHHHHHHHHhhhhccCCcc
Q 008299 224 RKYESIKKTLLHELAHMVYSEHD 246 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnvhg~Hd 246 (570)
++-+++..+|+|||+|.+|++.-
T Consensus 132 l~~~El~aVlAHElgHi~~~d~~ 154 (298)
T PRK04897 132 MNREELEGVIGHEISHIRNYDIR 154 (298)
T ss_pred CCHHHHHHHHHHHHHHHhcCCHH
Confidence 35699999999999999987653
No 84
>KOG3931 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.88 E-value=8.5 Score=41.96 Aligned_cols=51 Identities=29% Similarity=0.432 Sum_probs=39.2
Q ss_pred CCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhc---------cCCccHhHHHHHHHHH
Q 008299 206 NHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMV---------YSEHDANFYGLDKQLN 257 (570)
Q Consensus 206 N~Gq~I~LRLRt~d~~~Flp~e~V~~tlLHELaHnv---------hg~Hd~~F~~L~~~L~ 257 (570)
.+|--+.|||-.+ ..-.||..+++.|||||+-|-. .+.|++.|.+.+..|+
T Consensus 83 g~gg~csIRLSeP-LLkLRPRkDLVETLLHEMIHAYlFV~n~~~dr~GHGP~F~~hMhrIN 142 (484)
T KOG3931|consen 83 GKGGMCSIRLSEP-LLKLRPRKDLVETLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRIN 142 (484)
T ss_pred cccceEEEEecch-hhccCchHHHHHHHHHHHHHHheeEecccccCCCCChHHHHHHHHHh
Confidence 3455567777442 3568999999999999999953 4689999999887764
No 85
>PRK03072 heat shock protein HtpX; Provisional
Probab=68.23 E-value=3.5 Score=42.96 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.2
Q ss_pred ccchHHHHHHHHHHhhhhccCCcc
Q 008299 223 FRKYESIKKTLLHELAHMVYSEHD 246 (570)
Q Consensus 223 Flp~e~V~~tlLHELaHnvhg~Hd 246 (570)
-++-+++..|+.|||+|+.+++--
T Consensus 121 ~l~~~El~aVlAHElgHi~~~d~~ 144 (288)
T PRK03072 121 ILNERELRGVLGHELSHVYNRDIL 144 (288)
T ss_pred hCCHHHHHHHHHHHHHHHhcCCHH
Confidence 346799999999999999987643
No 86
>PRK03982 heat shock protein HtpX; Provisional
Probab=67.84 E-value=3.6 Score=42.62 Aligned_cols=43 Identities=16% Similarity=0.348 Sum_probs=27.6
Q ss_pred ccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCCcc
Q 008299 200 VLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHD 246 (570)
Q Consensus 200 lLGlN~N~Gq~I~LRLRt~d~~~Flp~e~V~~tlLHELaHnvhg~Hd 246 (570)
..|++.++|- |.| ++..-.-++-++|..+|+|||+|..|+..-
T Consensus 100 a~G~~~~~~~-V~v---t~gLl~~l~~~El~AVlAHElgHi~~~h~~ 142 (288)
T PRK03982 100 ATGRDPKHAV-VAV---TEGILNLLNEDELEGVIAHELTHIKNRDTL 142 (288)
T ss_pred EeccCCCCeE-EEe---ehHHHhhCCHHHHHHHHHHHHHHHHcCCHH
Confidence 5676654433 222 222222346799999999999999998643
No 87
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=67.33 E-value=52 Score=28.81 Aligned_cols=73 Identities=15% Similarity=0.307 Sum_probs=54.3
Q ss_pred CCeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceee--eccCCCCCCCCCCCCccccccccccccCCCc
Q 008299 5 GSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFI--VPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (570)
Q Consensus 5 ~~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL--~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~ 81 (570)
+....|.|.. +|+...-.+..+.||++|-.-+.. -|.+++.-+|| +|+ | .+..+....||.++||.+..
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPR-r------~~~~~d~~~TL~e~GL~P~~ 74 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPR-R------KLSHLDYDITLQEAGLCPQE 74 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCC-c------ccCCcccCCCHHHcCCCCCc
Confidence 4455666765 677888899999999999999988 58899999998 453 1 12222223689999999887
Q ss_pred eEEE
Q 008299 82 SIRM 85 (570)
Q Consensus 82 KImL 85 (570)
.|.+
T Consensus 75 ~LfV 78 (82)
T cd01773 75 TVFV 78 (82)
T ss_pred EEEE
Confidence 7765
No 88
>PRK03001 M48 family peptidase; Provisional
Probab=66.27 E-value=4.1 Score=42.12 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=17.9
Q ss_pred chHHHHHHHHHHhhhhccCC
Q 008299 225 KYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 225 p~e~V~~tlLHELaHnvhg~ 244 (570)
.-+++..+|+|||+|.+|++
T Consensus 120 ~~~El~aVlAHElgHi~~~h 139 (283)
T PRK03001 120 SEREIRGVMAHELAHVKHRD 139 (283)
T ss_pred CHHHHHHHHHHHHHHHhCCC
Confidence 56899999999999999874
No 89
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=66.09 E-value=3.8 Score=41.52 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=37.3
Q ss_pred HHHhhcCeeeccccccCCCCCCCCCCCcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCCcc
Q 008299 172 AIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHD 246 (570)
Q Consensus 172 pIMr~h~w~V~~L~Ef~P~~~~~~s~~~lLGlN~N~Gq~I~LRLRt~d~~~Flp~e~V~~tlLHELaHnvhg~Hd 246 (570)
.....+.|.|.....-.|.. --+|.+.+.| +|.|- + ..-.-+.-++|..||.||++|.+|++.=
T Consensus 111 ~~~~~~~~~v~i~~~~~~NA-------Fa~g~~~~~~-~V~vt--~-gLl~~l~~dEl~aVlaHElgHi~~rd~~ 174 (302)
T COG0501 111 QAGIPHMPEVYILETPQPNA-------FALGGGPKNG-RVVVT--T-GLLDLLNDDELEAVLAHELGHIKNRHTL 174 (302)
T ss_pred HCCCCCCCeeEEecCCCccc-------eecCCCCCCe-eEEec--H-HHHhhCCHHHHHHHHHHHHHHHhcccHH
Confidence 33334457777776444442 2455544222 23321 1 1111456799999999999999988654
No 90
>PRK02391 heat shock protein HtpX; Provisional
Probab=64.07 E-value=4.8 Score=42.32 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.8
Q ss_pred cchHHHHHHHHHHhhhhccCC
Q 008299 224 RKYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnvhg~ 244 (570)
+.-+++..++.|||+|..|++
T Consensus 128 L~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 128 LDPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred CCHHHHHHHHHHHHHHHHcCC
Confidence 456999999999999999885
No 91
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=63.98 E-value=14 Score=33.04 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=32.6
Q ss_pred EEEEECCEE--EEEEeC--CCCCHHHHHHHHHHHhC--CCCCCceeeeccCCCCCCC
Q 008299 10 VSAIWRGKK--YVVEVN--SGSPLKELGHELQKLTD--VKADTMRFIVPQNKGSKLL 60 (570)
Q Consensus 10 ItVkwrGk~--~~I~L~--~daTV~dLK~~Ie~lTg--VPpe~QKLL~pk~KG~~Lk 60 (570)
|+|-|.... ..++++ ...||.+||..|.+... ..-.++|||+ .|.+|.
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~---~Gr~L~ 56 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIY---AGRLLN 56 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeee---cCcccC
Confidence 344444422 234455 78999999999999983 3445688898 687665
No 92
>PRK02870 heat shock protein HtpX; Provisional
Probab=63.66 E-value=4.7 Score=43.29 Aligned_cols=75 Identities=15% Similarity=0.251 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCcchHHHHhhcCeeeccccccCCCCCCCCCCCcccccccCCccEEEEEeecCCCCCccchHHHHHHH
Q 008299 154 ASEALKIMHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTL 233 (570)
Q Consensus 154 ~~~Al~lL~rLA~d~~V~pIMr~h~w~V~~L~Ef~P~~~~~~s~~~lLGlN~N~Gq~I~LRLRt~d~~~Flp~e~V~~tl 233 (570)
..+-.+++++|+...++ ...|+|..+..=.|. .-..|++.+.| .|.| |+..-.-++-+++..+|
T Consensus 114 ~~~L~~~ve~La~~ag~-----p~~p~V~vi~~~~~N-------AFA~G~~~~~~-~Ivv---t~GLL~~L~~dEL~aVl 177 (336)
T PRK02870 114 ERQLYNVVEELLVAAGL-----RFMPKVYIIDAPYMN-------AFASGYSEKSA-MVAI---TTGLLEKLDRDELQAVM 177 (336)
T ss_pred hHHHHHHHHHHHHHcCC-----CCCCeEEEEcCCCCc-------eEEecCCCCCc-EEEE---ehHHhhhCCHHHHHHHH
Confidence 34555666666654332 112344443322232 34567765433 3333 11111234679999999
Q ss_pred HHHhhhhccCC
Q 008299 234 LHELAHMVYSE 244 (570)
Q Consensus 234 LHELaHnvhg~ 244 (570)
+|||+|..|+.
T Consensus 178 AHELgHik~~d 188 (336)
T PRK02870 178 AHELSHIRHGD 188 (336)
T ss_pred HHHHHHHHccc
Confidence 99999997754
No 93
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=63.24 E-value=34 Score=28.46 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=44.9
Q ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 8 ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
.+|.|.. +|+...-.++.+.||.+|.+-|.....- ...=.|+..- . +..+.+.....||.++||.++.-|+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~--P---r~~~~~~~~~~TL~e~gL~~s~~~~ 74 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSF--P---RRVLTDLDYELTLQEAGLVNEVVFQ 74 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCC--C---CccCCCCCccCcHHHcCCccceEEE
Confidence 4455554 5667778999999999999999876543 3444555310 1 1123332234789999998654443
No 94
>PRK05457 heat shock protein HtpX; Provisional
Probab=63.07 E-value=5.1 Score=41.82 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=18.8
Q ss_pred cchHHHHHHHHHHhhhhccCC
Q 008299 224 RKYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnvhg~ 244 (570)
++-+++..++.|||+|..|++
T Consensus 129 L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 129 MSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred CCHHHHHHHHHHHHHHHHcCC
Confidence 567999999999999999875
No 95
>PRK01345 heat shock protein HtpX; Provisional
Probab=61.75 E-value=5.5 Score=42.25 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.4
Q ss_pred cchHHHHHHHHHHhhhhccCC
Q 008299 224 RKYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnvhg~ 244 (570)
++-++|..+|+|||+|.+|++
T Consensus 119 L~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 119 LSPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred CCHHHHHHHHHHHHHHHHcCC
Confidence 466899999999999999865
No 96
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=61.70 E-value=5.3 Score=38.46 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=28.7
Q ss_pred ccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCCccHh
Q 008299 200 VLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 200 lLGlN~N~Gq~I~LRLRt~d~~~Flp~e~V~~tlLHELaHnvhg~Hd~~ 248 (570)
.+|.+. +..|.|--.- -.-++-+++..+|.|||+|+.++..-..
T Consensus 65 ~~g~~~--~~~I~v~~~l---l~~~~~~el~aVlaHElgH~~~~h~~~~ 108 (226)
T PF01435_consen 65 ATGGGP--RKRIVVTSGL---LESLSEDELAAVLAHELGHIKHRHILKS 108 (226)
T ss_dssp EETTTC----EEEEEHHH---HHHSSHHHHHHHHHHHHHHHHTTHCCCC
T ss_pred EEccCC--CcEEEEeChh---hhcccHHHHHHHHHHHHHHHHcCCcchH
Confidence 455544 4455554322 1235568999999999999998877666
No 97
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=61.51 E-value=24 Score=31.81 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=33.7
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeec
Q 008299 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (570)
Q Consensus 16 Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~p 52 (570)
.++|+|.+++++|=.++|.++++++||.+..-..|+-
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~ 57 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNT 57 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEe
Confidence 3689999999999999999999999999999888763
No 98
>COG4900 Predicted metallopeptidase [General function prediction only]
Probab=61.15 E-value=11 Score=35.24 Aligned_cols=50 Identities=30% Similarity=0.276 Sum_probs=33.2
Q ss_pred ccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhcc------CCcc--HhHHHHHH
Q 008299 200 VLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVY------SEHD--ANFYGLDK 254 (570)
Q Consensus 200 lLGlN~N~Gq~I~LRLRt~d~~~Flp~e~V~~tlLHELaHnvh------g~Hd--~~F~~L~~ 254 (570)
.||||- +-.|+|-- . ...-|+-++=+++|+|||+|+-. .+|+ .+||..++
T Consensus 56 ~lglnP--~YviEl~s-e--kF~rLs~~ekvKviiHEllHIP~tfSGgLRaHg~~vn~rrv~k 113 (133)
T COG4900 56 VLGLNP--VYVIELLS-E--KFKRLSCAEKVKVIIHELLHIPATFSGGLRAHGPLVNFRRVYK 113 (133)
T ss_pred HhCCCC--eeeeeeeh-h--hcCCCChHHHHHHHHHHHhcCcccccCccccCCcchhHHHHHH
Confidence 455553 56666532 1 01235678899999999999974 3888 78887553
No 99
>PRK01265 heat shock protein HtpX; Provisional
Probab=58.88 E-value=6.6 Score=42.06 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.5
Q ss_pred cchHHHHHHHHHHhhhhccCC
Q 008299 224 RKYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnvhg~ 244 (570)
++-+++..++.|||+|..|++
T Consensus 135 l~~~El~aVlAHElgHik~~d 155 (324)
T PRK01265 135 LNRDEIKAVAGHELGHLKHRD 155 (324)
T ss_pred CCHHHHHHHHHHHHHHHHccc
Confidence 567999999999999998765
No 100
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=58.46 E-value=8.2 Score=42.13 Aligned_cols=41 Identities=27% Similarity=0.248 Sum_probs=27.7
Q ss_pred ccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCC
Q 008299 204 NKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 204 N~N~Gq~I~LRLRt~d~~~Flp~e~V~~tlLHELaHnvhg~ 244 (570)
.-|.|+-+.|-.-+-...+.--.+.+..||.||+-|+++-.
T Consensus 114 ~SNe~e~~YiD~~~~~~~~~~~~~~~~sTlAHEfQHmInfy 154 (366)
T PF10460_consen 114 YSNESEYFYIDSETLYLGGNSGPDTVYSTLAHEFQHMINFY 154 (366)
T ss_pred CCcceeEEEEecHHhhccCCccHHHHHHHHHHHHHHHHHHH
Confidence 34667777776654211222227889999999999999654
No 101
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=58.43 E-value=47 Score=29.61 Aligned_cols=61 Identities=13% Similarity=0.315 Sum_probs=40.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCC--CCCCCCCCccccccccccccCCCceEEE
Q 008299 18 KYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGS--KLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 18 ~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~--~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
.++..+....||..+..++.++++| ++.-+|-....-++ .|..| ..|+.++||..|+.|+|
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~------~~Tv~da~L~~gQ~vli 77 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNP------EITVEDAGLYDGQVVLI 77 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--T------TSBTTTTT--TTEEEEE
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCC------CccHHHccCcCCCEEEE
Confidence 6677888999999999999999999 66678865221121 12211 26789999999998876
No 102
>PF13058 DUF3920: Protein of unknown function (DUF3920)
Probab=58.08 E-value=5.5 Score=36.97 Aligned_cols=20 Identities=45% Similarity=0.795 Sum_probs=17.7
Q ss_pred ccchHHHHHHHHHHhhhhcc
Q 008299 223 FRKYESIKKTLLHELAHMVY 242 (570)
Q Consensus 223 Flp~e~V~~tlLHELaHnvh 242 (570)
|-.|+.|+.||+||+-|-..
T Consensus 70 we~y~qvlktllhefrh~mQ 89 (126)
T PF13058_consen 70 WEEYEQVLKTLLHEFRHAMQ 89 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 66799999999999999655
No 103
>COG5417 Uncharacterized small protein [Function unknown]
Probab=57.92 E-value=50 Score=28.91 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=48.9
Q ss_pred EEEEE---EECCEEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCceeeeccCCCCCCCCCCCCccccccccccccCC
Q 008299 8 LKVSA---IWRGKKYVVEVNSGSPLKELGHELQKLTDVKA-----DTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIE 79 (570)
Q Consensus 8 ItItV---kwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPp-----e~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~ 79 (570)
|.||| .|+|.+|++.++.--+++.|=.-+.+...|.. ...|.+. |+.+|. ++ ..|...++.+
T Consensus 5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~n---Ka~lls----gd---~kL~d~~Iad 74 (81)
T COG5417 5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMN---KAQLLS----GD---DKLIDYQIAD 74 (81)
T ss_pred EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEec---cceEec----CC---ceEEeccccC
Confidence 55555 58999999999999999999998888877643 2346665 676443 22 2366788888
Q ss_pred CceEEE
Q 008299 80 GKSIRM 85 (570)
Q Consensus 80 G~KImL 85 (570)
|-.+-+
T Consensus 75 GD~Lei 80 (81)
T COG5417 75 GDILEI 80 (81)
T ss_pred CCEEEe
Confidence 877654
No 104
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=56.95 E-value=22 Score=37.30 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=47.0
Q ss_pred EEEEEECCE--EEE-EEeCCCCCHHHHHHHH-HHHhCCCCCCceeeecc-CCCCCCCCCCCCccccccccccccCCCceE
Q 008299 9 KVSAIWRGK--KYV-VEVNSGSPLKELGHEL-QKLTDVKADTMRFIVPQ-NKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 9 tItVkwrGk--~~~-I~L~~daTV~dLK~~I-e~lTgVPpe~QKLL~pk-~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
.|+++-|++ ..+ ..++..+|+.|++.+| .+....-+.+|++-.+. .||+-+. ++ .+|++.++.+|.+|
T Consensus 2 ~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~----~~---s~l~e~~~~s~~~i 74 (297)
T KOG1639|consen 2 EITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLI----DN---SKLQEYGDGSGATI 74 (297)
T ss_pred ceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCcccc----ch---hHHHHhccCCCCEE
Confidence 477777777 444 4567778999999555 55677888777765533 4665444 22 45888888888776
Q ss_pred EE
Q 008299 84 RM 85 (570)
Q Consensus 84 mL 85 (570)
-+
T Consensus 75 ~v 76 (297)
T KOG1639|consen 75 YV 76 (297)
T ss_pred EE
Confidence 55
No 105
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=56.66 E-value=9.3 Score=45.72 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=22.3
Q ss_pred CccchHHHHHHHHHHhhhhccCCccHhHH
Q 008299 222 GFRKYESIKKTLLHELAHMVYSEHDANFY 250 (570)
Q Consensus 222 ~Flp~e~V~~tlLHELaHnvhg~Hd~~F~ 250 (570)
.--.|+.|-.|.+|||||++.|+==-..|
T Consensus 300 t~~~~~~~~~viaHElaHqWfGnlVT~~~ 328 (859)
T COG0308 300 TDSDYENVEEVIAHELAHQWFGNLVTMKW 328 (859)
T ss_pred hhHHHHHHHHHHHHHHhhhcccceeeccC
Confidence 34455889999999999999997544443
No 106
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=56.20 E-value=4.6 Score=40.77 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=16.7
Q ss_pred HHHHHHhhhhccCCccHh
Q 008299 231 KTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 231 ~tlLHELaHnvhg~Hd~~ 248 (570)
.||.|||.||.-++||..
T Consensus 147 ~t~AHElGHnLGm~HD~~ 164 (228)
T cd04271 147 QVFAHEIGHTFGAVHDCT 164 (228)
T ss_pred eehhhhhhhhcCCCCCCC
Confidence 799999999999999974
No 107
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=53.84 E-value=8.6 Score=36.81 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=17.5
Q ss_pred ccchHHHHHHHHHHhhhhccCCccHhH
Q 008299 223 FRKYESIKKTLLHELAHMVYSEHDANF 249 (570)
Q Consensus 223 Flp~e~V~~tlLHELaHnvhg~Hd~~F 249 (570)
..+...-..|+.|||.|+.-.+||..-
T Consensus 136 ~~~~~~~~~~~AHEiGH~lGa~HD~~~ 162 (196)
T PF13688_consen 136 VPPTYNGAITFAHEIGHNLGAPHDGDY 162 (196)
T ss_dssp E--HHHHHHHHHHHHHHHTT-----SS
T ss_pred ECCCCceehhhHHhHHHhcCCCCCCCC
Confidence 356788899999999999999998763
No 108
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=52.93 E-value=33 Score=30.28 Aligned_cols=37 Identities=19% Similarity=0.439 Sum_probs=34.3
Q ss_pred EEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 008299 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKA 44 (570)
Q Consensus 8 ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPp 44 (570)
|+|++.|+|..+.+.++++.|...|.+++.++.....
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~ 37 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHN 37 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCC
Confidence 5799999999999999999999999999999999853
No 109
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=51.95 E-value=7.5 Score=34.36 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=11.7
Q ss_pred HHHHHHhhhhccCCcc
Q 008299 231 KTLLHELAHMVYSEHD 246 (570)
Q Consensus 231 ~tlLHELaHnvhg~Hd 246 (570)
.|+.|||-|+.-..||
T Consensus 109 ~~~~HEiGH~lGl~Hd 124 (124)
T PF13582_consen 109 DTFAHEIGHNLGLNHD 124 (124)
T ss_dssp THHHHHHHHHTT----
T ss_pred eEeeehhhHhcCCCCC
Confidence 8999999999999996
No 110
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=51.92 E-value=13 Score=37.72 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=28.1
Q ss_pred ccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCCccHh
Q 008299 204 NKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 204 N~N~Gq~I~LRLRt~d~~~Flp~e~V~~tlLHELaHnvhg~Hd~~ 248 (570)
|-+.+-.|.| +. ..-.....+.+||.|||=||+-..|.+-
T Consensus 113 ~G~P~~~I~I---~~--~~~~~~~~~~hvi~HEiGH~IGfRHTD~ 152 (211)
T PF12388_consen 113 NGNPYKFIQI---YG--LSNYSVNVIEHVITHEIGHCIGFRHTDY 152 (211)
T ss_pred CCCCCceEEE---Ee--cCCCchhHHHHHHHHHhhhhccccccCc
Confidence 3345567777 21 1223456799999999999999999763
No 111
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=49.66 E-value=10 Score=37.57 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhhccCCccHh
Q 008299 229 IKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 229 V~~tlLHELaHnvhg~Hd~~ 248 (570)
...||.|||+|+.-++||..
T Consensus 145 ~~~~~AHElGH~lG~~HD~~ 164 (220)
T cd04272 145 GVYTMTHELAHLLGAPHDGS 164 (220)
T ss_pred cHHHHHHHHHHHhCCCCCCC
Confidence 36999999999999999976
No 112
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=48.46 E-value=29 Score=34.09 Aligned_cols=40 Identities=10% Similarity=0.277 Sum_probs=33.4
Q ss_pred EEECC----EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeee
Q 008299 12 AIWRG----KKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV 51 (570)
Q Consensus 12 VkwrG----k~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~ 51 (570)
-++.| .++.+.+++++||.+|...|.+.+++++..|-+|+
T Consensus 6 ss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~ 49 (162)
T PF13019_consen 6 SSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLT 49 (162)
T ss_pred ecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEE
Confidence 34566 57788999999999999999999999999984343
No 113
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=48.16 E-value=89 Score=26.83 Aligned_cols=71 Identities=13% Similarity=0.215 Sum_probs=50.7
Q ss_pred eEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceee--eccCCCCCCCCCCCCccccccccccccCCCceE
Q 008299 7 MLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFI--VPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 7 ~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL--~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
.++|.|.. +|+...-.+..+.|+++|-.-+... |.++..-+|+ +|+ | .|.+.....||.++||.+...|
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPR-k------~~~~~d~~~TL~e~gL~p~~~L 75 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPR-R------DLTQLDPNFTLLELKLYPQETL 75 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCC-C------CCcCCCCCCcHHHcCCCCCcEE
Confidence 45666665 4666677899999999999999875 8888888987 453 1 2222122368999999887776
Q ss_pred EE
Q 008299 84 RM 85 (570)
Q Consensus 84 mL 85 (570)
.+
T Consensus 76 ~V 77 (80)
T cd01771 76 IL 77 (80)
T ss_pred EE
Confidence 65
No 114
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=47.45 E-value=14 Score=35.58 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhhhhccCCccHh
Q 008299 226 YESIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 226 ~e~V~~tlLHELaHnvhg~Hd~~ 248 (570)
+.....|+.|||.|+.-.+||..
T Consensus 128 ~~~~a~~~AHElGH~lG~~HD~~ 150 (194)
T cd04269 128 LLLFAVTMAHELGHNLGMEHDDG 150 (194)
T ss_pred hHHHHHHHHHHHHhhcCCCcCCC
Confidence 44567899999999999999987
No 115
>PF14521 Aspzincin_M35: Lysine-specific metallo-endopeptidase ; PDB: 2X3C_A 2X3A_A 2X3B_A 1GE7_B 1GE6_A 1GE5_A 1G12_A.
Probab=47.26 E-value=10 Score=35.81 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhhhcc
Q 008299 227 ESIKKTLLHELAHMVY 242 (570)
Q Consensus 227 e~V~~tlLHELaHnvh 242 (570)
..=..||+|||+|..-
T Consensus 94 ~Sk~~TLiHE~SHf~~ 109 (148)
T PF14521_consen 94 DSKEGTLIHEWSHFTA 109 (148)
T ss_dssp T-HHHHHHHHHHHSCC
T ss_pred CchHHHHHHhhhhhhh
Confidence 4568999999999543
No 116
>PRK14015 pepN aminopeptidase N; Provisional
Probab=46.99 E-value=11 Score=45.37 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHhhhhccCC
Q 008299 225 KYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 225 p~e~V~~tlLHELaHnvhg~ 244 (570)
.+..+..+++|||||+++|+
T Consensus 292 ~~~~i~~vIaHElaHqWFGN 311 (875)
T PRK14015 292 DYERIESVIAHEYFHNWTGN 311 (875)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 45678899999999999995
No 117
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=46.99 E-value=12 Score=39.70 Aligned_cols=36 Identities=36% Similarity=0.356 Sum_probs=25.2
Q ss_pred cchHHHHHHHHHHhhhhc--cCCccHhHHHHHHHHHHH
Q 008299 224 RKYESIKKTLLHELAHMV--YSEHDANFYGLDKQLNQE 259 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnv--hg~Hd~~F~~L~~~L~~E 259 (570)
+|.-.+=-|+||||||-. -.+=-++|++.+.-++..
T Consensus 191 ~p~~~~P~T~~HElAHq~G~a~E~EANFiayLac~~s~ 228 (318)
T PF12725_consen 191 LPPYSLPFTICHELAHQLGFASEDEANFIAYLACINSP 228 (318)
T ss_pred CCcccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 444556679999999987 335667888877655544
No 118
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=46.98 E-value=11 Score=45.24 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.2
Q ss_pred cchHHHHHHHHHHhhhhccCC
Q 008299 224 RKYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnvhg~ 244 (570)
..|..|..+++||++|+++|+
T Consensus 278 ~~~~~i~~VIaHElaHqWfGN 298 (863)
T TIGR02414 278 ADYERIESVIAHEYFHNWTGN 298 (863)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 446789999999999999995
No 119
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=45.72 E-value=25 Score=35.19 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=24.4
Q ss_pred EEEEEEECC------EEEEEEeCCCCCHHHHHHHHHHHhCCCCC-Cceeee
Q 008299 8 LKVSAIWRG------KKYVVEVNSGSPLKELGHELQKLTDVKAD-TMRFIV 51 (570)
Q Consensus 8 ItItVkwrG------k~~~I~L~~daTV~dLK~~Ie~lTgVPpe-~QKLL~ 51 (570)
.+|.|.|-+ +.|+|-++.++||.||-.++....+++.+ .+||.+
T Consensus 19 k~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl 69 (213)
T PF14533_consen 19 KQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRL 69 (213)
T ss_dssp --EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEE
T ss_pred eEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEE
Confidence 456666653 24667789999999999999999999776 677754
No 120
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=45.71 E-value=10 Score=36.26 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhhccCCccHh
Q 008299 227 ESIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 227 e~V~~tlLHELaHnvhg~Hd~~ 248 (570)
.....|+.|||.|+.-..||..
T Consensus 131 ~~~~~~~aHElGH~lG~~HD~~ 152 (192)
T cd04267 131 LLTALTMAHELGHNLGAEHDGG 152 (192)
T ss_pred eeehhhhhhhHHhhcCCcCCCC
Confidence 4556799999999999999986
No 121
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=45.29 E-value=13 Score=44.28 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHhhhhccC
Q 008299 226 YESIKKTLLHELAHMVYS 243 (570)
Q Consensus 226 ~e~V~~tlLHELaHnvhg 243 (570)
...+..+++|||||.++|
T Consensus 284 ~~~~~~viaHElAHqWFG 301 (831)
T TIGR02412 284 KENRAGVILHEMAHMWFG 301 (831)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 456889999999999999
No 122
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=44.48 E-value=12 Score=35.93 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhhccCCccHh
Q 008299 229 IKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 229 V~~tlLHELaHnvhg~Hd~~ 248 (570)
-..|++|||.|+.-.+||..
T Consensus 111 ~~~~~aHElGH~lGa~Hd~~ 130 (173)
T PF13574_consen 111 GIDTFAHELGHQLGAPHDFD 130 (173)
T ss_dssp HHHHHHHHHHHHHT---SSS
T ss_pred eeeeehhhhHhhcCCCCCCC
Confidence 67789999999999999988
No 123
>PRK06437 hypothetical protein; Provisional
Probab=44.04 E-value=96 Score=25.63 Aligned_cols=53 Identities=13% Similarity=0.323 Sum_probs=37.1
Q ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 15 RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 15 rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
+++.-.++++...||++|=.+| |++++.-.+.+ .|..+. .+.-|++|-+|.++
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~v---Ng~iv~------------~~~~L~dgD~Veiv 61 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDL----GLDEEEYVVIV---NGSPVL------------EDHNVKKEDDVLIL 61 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHc----CCCCccEEEEE---CCEECC------------CceEcCCCCEEEEE
Confidence 6677788888999999987666 88877766665 454322 11246788888775
No 124
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=43.57 E-value=1.1e+02 Score=26.19 Aligned_cols=68 Identities=22% Similarity=0.339 Sum_probs=45.8
Q ss_pred eEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCC-CCceee--eccCCCCCCCCCCCCccccccccccccCCCce
Q 008299 7 MLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKA-DTMRFI--VPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKS 82 (570)
Q Consensus 7 ~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPp-e~QKLL--~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~K 82 (570)
+.+|.|.. +|+..+..++.+.||.+|.+-|....+-+. ..-.|+ +|+ | .+.+. ..||.++||.+..-
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~-k------~l~~~--~~Tl~eagL~~s~v 74 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPV-K------ELSDE--SLTLKEANLLNAVI 74 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCC-c------ccCCC--CCcHHHCCCcCcEE
Confidence 45666665 467788899999999999999998765432 334554 442 1 23333 36899999986544
Q ss_pred E
Q 008299 83 I 83 (570)
Q Consensus 83 I 83 (570)
+
T Consensus 75 ~ 75 (79)
T cd01770 75 V 75 (79)
T ss_pred E
Confidence 4
No 125
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=42.99 E-value=13 Score=42.73 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhhccCC
Q 008299 229 IKKTLLHELAHMVYSE 244 (570)
Q Consensus 229 V~~tlLHELaHnvhg~ 244 (570)
...+++|||||.++|+
T Consensus 279 ~~~viaHElAHqWfGN 294 (601)
T TIGR02411 279 NVDVIAHELAHSWSGN 294 (601)
T ss_pred hhhhHHHHHHhhccCc
Confidence 4689999999999994
No 126
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=42.77 E-value=48 Score=28.96 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=34.3
Q ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeec
Q 008299 10 VSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (570)
Q Consensus 10 ItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~p 52 (570)
|+|++. =+..|.++...+..+|...|.+.+..+++.-+|=|.
T Consensus 1 ~~Vh~~-fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 1 VTVQCA-FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred CEEEEE-EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 355554 233357899999999999999999999999999884
No 127
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=42.55 E-value=1.2e+02 Score=26.33 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=48.9
Q ss_pred eEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceee--eccCCCCCCCCCCCCccccccccccccCCCceE
Q 008299 7 MLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFI--VPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 7 ~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL--~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
.++|.|.. +|+...-.+..+.||++|..-|... +..++.-.|+ +|+ | .+-..|-.......||.++||.+...|
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPr-r-~~~~~~~~~~~~~~TL~eaGL~~s~~L 80 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPR-R-VLPCLPSEGDPPPPTLLEAGLSNSEVL 80 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCC-c-cccccccccCcCCCCHHHcCCCCccEE
Confidence 56666664 5666677899999999999999754 5566788887 342 1 110001001112468999999877666
Q ss_pred EE
Q 008299 84 RM 85 (570)
Q Consensus 84 mL 85 (570)
.+
T Consensus 81 ~V 82 (85)
T cd01774 81 FV 82 (85)
T ss_pred EE
Confidence 54
No 128
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.19 E-value=39 Score=36.82 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=49.6
Q ss_pred EEEEECCEEE--EEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 10 VSAIWRGKKY--VVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 10 ItVkwrGk~~--~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
++|-+.|+.. ...+.-.-||.||+..|..+.||.+-++||++.+..|.. +.|+.....+.|-...|..|-.|.+
T Consensus 339 vk~l~~~~~v~~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt--~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 339 VKALNSGPKVIASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRT--DDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred eeeeccCCccccceEEEeehHHHHHHHHhccccccccceeEEEEEcccCcc--CCccccCCCCcceEEeccCCCEeee
Confidence 3344444433 345666789999999999999999999999998766652 2333322345565567777766543
No 129
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=41.51 E-value=19 Score=37.81 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHhhhhccCC
Q 008299 225 KYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 225 p~e~V~~tlLHELaHnvhg~ 244 (570)
....+..+++|||||.++|+
T Consensus 291 ~~~~~~~~iahElahqWfGn 310 (390)
T PF01433_consen 291 DKQEIASLIAHELAHQWFGN 310 (390)
T ss_dssp HHHHHHHHHHHHHHTTTBTT
T ss_pred hhhhhHHHHHHHHHHHHhcc
Confidence 35689999999999999995
No 130
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=40.32 E-value=19 Score=32.32 Aligned_cols=16 Identities=50% Similarity=0.717 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHhhhhc
Q 008299 226 YESIKKTLLHELAHMV 241 (570)
Q Consensus 226 ~e~V~~tlLHELaHnv 241 (570)
-+.|+.|++||+||..
T Consensus 70 ~~~I~~tlvhEiah~f 85 (97)
T PF06262_consen 70 AELIRDTLVHEIAHHF 85 (97)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3679999999999964
No 131
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=39.62 E-value=15 Score=34.28 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhhhcc
Q 008299 227 ESIKKTLLHELAHMVY 242 (570)
Q Consensus 227 e~V~~tlLHELaHnvh 242 (570)
+-++.||.|||+|.+.
T Consensus 77 KGC~~TL~HEL~H~WQ 92 (141)
T PHA02456 77 KGCRDTLAHELNHAWQ 92 (141)
T ss_pred cchHHHHHHHHHHHHh
Confidence 3478999999999874
No 132
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=39.44 E-value=56 Score=28.94 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=33.5
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeec
Q 008299 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (570)
Q Consensus 16 Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~p 52 (570)
.++|+|.++..+|=.+.|.+|+.++||++..-.-+..
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~ 56 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNV 56 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEe
Confidence 4689999999999999999999999999988777753
No 133
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=39.28 E-value=18 Score=43.49 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=21.7
Q ss_pred ccchHHHHHHHHHHhhhhccCCc-cHhHH
Q 008299 223 FRKYESIKKTLLHELAHMVYSEH-DANFY 250 (570)
Q Consensus 223 Flp~e~V~~tlLHELaHnvhg~H-d~~F~ 250 (570)
=..+..|..+++|||||.++||= ..++|
T Consensus 318 ~~~k~~va~vIaHElAHQWFGNLVTm~wW 346 (882)
T KOG1046|consen 318 SSNKQRVAEVIAHELAHQWFGNLVTMKWW 346 (882)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHhhh
Confidence 33478899999999999999963 34444
No 134
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=38.54 E-value=19 Score=34.53 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=16.9
Q ss_pred CCccchHHHHHHHHHHhhhhc
Q 008299 221 KGFRKYESIKKTLLHELAHMV 241 (570)
Q Consensus 221 ~~Flp~e~V~~tlLHELaHnv 241 (570)
..|.||-.-+.|+.|||+|-|
T Consensus 127 ~~f~~~~~~lDVvaHEltHGV 147 (150)
T PF01447_consen 127 QIFKPFASSLDVVAHELTHGV 147 (150)
T ss_dssp SSBS-GGG-HHHHHHHHHHHH
T ss_pred cccccCccccceeeecccccc
Confidence 369999999999999999965
No 135
>PRK08453 fliD flagellar capping protein; Validated
Probab=37.66 E-value=44 Score=39.42 Aligned_cols=33 Identities=15% Similarity=0.389 Sum_probs=29.1
Q ss_pred eEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHH
Q 008299 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKL 39 (570)
Q Consensus 7 ~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~l 39 (570)
...|++.++|++|+|++++..||.+|...|=..
T Consensus 128 ~~~~~~~~~G~~~sIdi~~gtTL~~L~~~INd~ 160 (673)
T PRK08453 128 DTTLKFYTQGKDYAIDIKAGMTLGDVAQSITDA 160 (673)
T ss_pred CceEEEEECCEEEEEEeCCCCcHHHHHHHhcCC
Confidence 356888999999999999999999999999633
No 136
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=37.35 E-value=53 Score=28.37 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=33.1
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeec
Q 008299 17 KKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (570)
Q Consensus 17 k~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~p 52 (570)
++|+|.++.++|=.+.|.+|+.++||.+..-..+..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~ 50 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLIT 50 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEc
Confidence 689999999999999999999999999988887764
No 137
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=37.30 E-value=44 Score=36.28 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHhhhhc-cCCccHhHHHHHHHHHHHHHHhhhhc
Q 008299 225 KYESIKKTLLHELAHMV-YSEHDANFYGLDKQLNQEAVALDWTK 267 (570)
Q Consensus 225 p~e~V~~tlLHELaHnv-hg~Hd~~F~~L~~~L~~E~~~l~~~~ 267 (570)
|-..+..++.|||||-+ +-+-|..|-+-+.....+.-...|-.
T Consensus 161 ~~~~LA~LIfHELaHq~~Yv~~dt~FNEsfAtfVe~~G~~~wl~ 204 (337)
T PF10023_consen 161 PDGELARLIFHELAHQTLYVKGDTAFNESFATFVEREGARRWLA 204 (337)
T ss_pred CchHHHHHHHHHHhhceeecCCCchhhHHHHHHHHHHHHHHHHH
Confidence 44679999999999987 66888899998888887777777853
No 138
>CHL00030 rpl23 ribosomal protein L23
Probab=37.22 E-value=56 Score=29.22 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=33.6
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeec
Q 008299 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (570)
Q Consensus 16 Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~p 52 (570)
.++|+|.++.++|=.+.|.+||.++||.+..-..+..
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 4689999999999999999999999999988877764
No 139
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=37.16 E-value=53 Score=38.92 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=36.7
Q ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeee
Q 008299 10 VSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV 51 (570)
Q Consensus 10 ItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~ 51 (570)
|=-.-+...|++-++++.|+..|+..|+..||||...|-||+
T Consensus 318 iFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~ 359 (732)
T KOG4250|consen 318 IFSMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLF 359 (732)
T ss_pred EEeeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeee
Confidence 333446677888899999999999999999999999999998
No 140
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=37.15 E-value=16 Score=31.43 Aligned_cols=15 Identities=47% Similarity=0.552 Sum_probs=11.8
Q ss_pred HHHHHHHHhhhhccC
Q 008299 229 IKKTLLHELAHMVYS 243 (570)
Q Consensus 229 V~~tlLHELaHnvhg 243 (570)
=...|.|||+|.+.-
T Consensus 61 ~~~llaHEl~Hv~Qq 75 (79)
T PF13699_consen 61 GRALLAHELAHVVQQ 75 (79)
T ss_pred cchhHhHHHHHHHhh
Confidence 356899999998753
No 141
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=36.33 E-value=26 Score=33.87 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=19.1
Q ss_pred cchHHHHHHHHHHhhhhccCCccHh
Q 008299 224 RKYESIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnvhg~Hd~~ 248 (570)
..+...-.+|.|||+|+.-.+||..
T Consensus 126 ~~~~~~a~~~AHelGH~lGm~HD~~ 150 (199)
T PF01421_consen 126 RSGLSFAVIIAHELGHNLGMPHDGD 150 (199)
T ss_dssp SSHHHHHHHHHHHHHHHTT---TTT
T ss_pred chhHHHHHHHHHHHHHhcCCCCCCC
Confidence 4566778999999999999999998
No 142
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=36.30 E-value=1.7e+02 Score=24.12 Aligned_cols=33 Identities=9% Similarity=0.226 Sum_probs=26.0
Q ss_pred EEEEECCE--EEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 008299 10 VSAIWRGK--KYVVEVNSGSPLKELGHELQKLTDVKADT 46 (570)
Q Consensus 10 ItVkwrGk--~~~I~L~~daTV~dLK~~Ie~lTgVPpe~ 46 (570)
++|+.+|+ ...++++.+.||.+|-++| +++++.
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~ 39 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTES 39 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCcc
Confidence 67777887 6678888999999998777 777655
No 143
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=36.14 E-value=39 Score=29.64 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=32.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeec
Q 008299 17 KKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (570)
Q Consensus 17 k~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~p 52 (570)
+.|+|.++.++|=.+++..|+.++||++..-..++.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~ 56 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNY 56 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEe
Confidence 579999999999999999999999999988777753
No 144
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=36.08 E-value=60 Score=31.78 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=32.9
Q ss_pred CCeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 008299 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKA 44 (570)
Q Consensus 5 ~~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPp 44 (570)
++.+.|+++.+|+.++++++++.|+.++=... .+||+..
T Consensus 4 ~~~~~i~~~vNG~~~~~~~~~~~~Ll~~LR~~-gltgtK~ 42 (159)
T PRK09908 4 SETITIECTINGMPFQLHAAPGTPLSELLREQ-GLLSVKQ 42 (159)
T ss_pred CCceeEEEEECCEEEEEecCCCCcHHHHHHHc-CCCCCCC
Confidence 44678999999999999999999998887775 7888763
No 145
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=34.18 E-value=25 Score=31.98 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHHhhhhccCCccH
Q 008299 224 RKYESIKKTLLHELAHMVYSEHDA 247 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnvhg~Hd~ 247 (570)
.....+..|++|||-|..-..|..
T Consensus 100 ~~~~~~~~v~~HEiGHaLGL~H~~ 123 (154)
T PF00413_consen 100 DSGNDLQSVAIHEIGHALGLDHSN 123 (154)
T ss_dssp SSSEEHHHHHHHHHHHHTTBESSS
T ss_pred hhhhhhhhhhhhccccccCcCcCC
Confidence 344578999999999999889873
No 146
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=34.15 E-value=62 Score=28.44 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=33.5
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeec
Q 008299 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (570)
Q Consensus 16 Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~p 52 (570)
.++|+|.++..+|=.+.|.+|+.++||.+..-..+..
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~ 57 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLIT 57 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEc
Confidence 3689999999999999999999999999988887764
No 147
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.13 E-value=99 Score=32.95 Aligned_cols=73 Identities=15% Similarity=0.230 Sum_probs=57.2
Q ss_pred CeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceee--eccCCCCCCCCCCCCccccccccccccCCCce
Q 008299 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFI--VPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKS 82 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL--~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~K 82 (570)
...+|.|.+ .|++...+|++..|+.++..-++--+++.+.==+|+ ||+ ..|.++....+|++++|.|...
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR-------~tf~edD~~KpLq~L~L~Psa~ 281 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPR-------VTFTEDDELKPLQELDLVPSAV 281 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCc-------eecccccccccHHHhccccchh
Confidence 367899999 999999999999999999999999999988666666 332 2344433356788888888776
Q ss_pred EEE
Q 008299 83 IRM 85 (570)
Q Consensus 83 ImL 85 (570)
|.|
T Consensus 282 lil 284 (290)
T KOG2689|consen 282 LIL 284 (290)
T ss_pred eec
Confidence 655
No 148
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=34.05 E-value=20 Score=39.05 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhhc--cCCccH
Q 008299 228 SIKKTLLHELAHMV--YSEHDA 247 (570)
Q Consensus 228 ~V~~tlLHELaHnv--hg~Hd~ 247 (570)
+-..|+||||+|+. ++|+-.
T Consensus 296 Dqatt~LHE~TH~~~V~~pgt~ 317 (359)
T PF02102_consen 296 DQATTTLHEMTHAPAVYSPGTD 317 (359)
T ss_dssp -HHHHHHHHHHT-TTTSSS--B
T ss_pred CccchhhhhhhccccccCCCcc
Confidence 45689999999995 555443
No 149
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=33.94 E-value=1.4e+02 Score=29.34 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=49.5
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEeccchhHHH
Q 008299 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMGVSEDEVD 94 (570)
Q Consensus 16 Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmGS~~~EIe 94 (570)
.+.|+|.++.++|=.+++.+|+.++||.+..-..+..+.|-.-.. .+..-....--.=+-|..|.+|-+++....+-+
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K~KR~g-~~~G~~~~~KKAiVtL~~g~~I~~f~~~~~~~~ 99 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKPKRLG-RFPGFTNSYKKAYVTLAEGYSINLFPEESEKEQ 99 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCcccccC-CcccccCCcEEEEEECCCCCEeeccCCcchhcc
Confidence 367999999999999999999999999998887775321110000 000000001111135678999988877655443
No 150
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=33.91 E-value=14 Score=39.64 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=0.0
Q ss_pred eEEEEEEECCEE-EEEEeC-----CCCCHHHHHHHHHH----------HhCCCCCCce-----eeec
Q 008299 7 MLKVSAIWRGKK-YVVEVN-----SGSPLKELGHELQK----------LTDVKADTMR-----FIVP 52 (570)
Q Consensus 7 ~ItItVkwrGk~-~~I~L~-----~daTV~dLK~~Ie~----------lTgVPpe~QK-----LL~p 52 (570)
+|+|+++--.+. .+|.|+ .+.||.|||.++++ .++||.+..| ||+.
T Consensus 78 sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~ 144 (309)
T PF12754_consen 78 SITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYK 144 (309)
T ss_dssp -------------------------------------------------------------------
T ss_pred eEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheec
Confidence 566665544333 445543 25789999999999 9999999999 9984
No 151
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=33.62 E-value=39 Score=37.78 Aligned_cols=67 Identities=18% Similarity=0.140 Sum_probs=39.4
Q ss_pred hhcCeeeccccccCCCCCCCCCCCcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccC
Q 008299 175 NKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYS 243 (570)
Q Consensus 175 r~h~w~V~~L~Ef~P~~~~~~s~~~lLGlN~N~Gq~I~LRLRt~d~~~Flp~e~V~~tlLHELaHnvhg 243 (570)
+..||--..+.+.--.-..+.|..-+.|+-.|+.=+|.=-|=-. ..=+.-++|..+++|||.|-.|+
T Consensus 228 ~s~gfp~~k~~vi~~s~rs~hsNAyfyG~~~~KRIvIyDtLl~~--~~~~~~eel~AVl~HELGHW~~~ 294 (428)
T KOG2719|consen 228 DSVGFPLSKYRVIDGSKRSSHSNAYFYGLCKNKRIVIYDTLLLE--EEHLNNEELVAVLAHELGHWKLN 294 (428)
T ss_pred HhcCCCceEEEEEecCCCCCCCCeeeeeccccceEEEehhhhhh--hhccccHHHHHHHHHHhhHHHHh
Confidence 34466555565555211223455679999877665553222200 00034589999999999996654
No 152
>PF13203 DUF2201_N: Putative metallopeptidase domain
Probab=32.54 E-value=31 Score=35.48 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=16.9
Q ss_pred chHHHHHHHHHHhhhhccCC
Q 008299 225 KYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 225 p~e~V~~tlLHELaHnvhg~ 244 (570)
.-+.+..+|+||+-||+++.
T Consensus 56 ~~~~~~~~l~HevlH~~~~H 75 (292)
T PF13203_consen 56 SPEERVGLLLHEVLHCLLRH 75 (292)
T ss_pred CHHHHHHHHHHHHHHHHccc
Confidence 45778899999999999764
No 153
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=31.76 E-value=11 Score=36.88 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhhccCCccHh
Q 008299 229 IKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 229 V~~tlLHELaHnvhg~Hd~~ 248 (570)
...|+.|||+|+.-..||..
T Consensus 140 ~a~~~aHElGH~LG~~HD~~ 159 (207)
T cd04273 140 SAFTIAHELGHVLGMPHDGD 159 (207)
T ss_pred eEEeeeeechhhcCCCCCCC
Confidence 35799999999999999987
No 154
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=31.29 E-value=61 Score=26.53 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=26.9
Q ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 008299 15 RGKKYVVEVNSGSPLKELGHELQKLTDVK 43 (570)
Q Consensus 15 rGk~~~I~L~~daTV~dLK~~Ie~lTgVP 43 (570)
.|...++.++.++|+.+|=.+|++.+|+.
T Consensus 5 D~~~~~~~v~~~~t~~~l~~~v~~~l~l~ 33 (80)
T PF09379_consen 5 DGTTKTFEVDPKTTGQDLLEQVCDKLGLK 33 (80)
T ss_dssp SEEEEEEEEETTSBHHHHHHHHHHHHTTS
T ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHcCCC
Confidence 57788999999999999999999999996
No 155
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=31.22 E-value=24 Score=32.50 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhhccCCccHh
Q 008299 227 ESIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 227 e~V~~tlLHELaHnvhg~Hd~~ 248 (570)
.....|++|||.|..-..|+..
T Consensus 94 ~~~~~~~~HElGH~LGl~H~~~ 115 (167)
T cd00203 94 KEGAQTIAHELGHALGFYHDHD 115 (167)
T ss_pred ccchhhHHHHHHHHhCCCccCc
Confidence 4578999999999999999865
No 156
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.
Probab=30.24 E-value=39 Score=34.26 Aligned_cols=34 Identities=35% Similarity=0.339 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhhccCCccHhHHHHHHHHHHHHHH
Q 008299 229 IKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVA 262 (570)
Q Consensus 229 V~~tlLHELaHnvhg~Hd~~F~~L~~~L~~E~~~ 262 (570)
+.-.|+||++|.+++.=+......-.+.+.+|+.
T Consensus 101 ~~fil~HE~~Hv~~~h~~~~~~~~~~~eE~~AD~ 134 (206)
T PF10463_consen 101 IAFILLHELAHVVLGHEGDSSPSQSIQEEKEADS 134 (206)
T ss_pred HHHHHHHHHHHHHHcCccccccchhHHHHHhhhH
Confidence 4467999999977764443255554445545443
No 157
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=29.85 E-value=1.1e+02 Score=27.54 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=29.5
Q ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 008299 14 WRGKKYVVEVNSGSPLKELGHELQKLTDVKAD 45 (570)
Q Consensus 14 wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe 45 (570)
-+|.+..+.++-+.|..+|..+|.+.+++...
T Consensus 20 ~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~ 51 (97)
T cd06410 20 VGGETRIVSVDRSISFKELVSKLSELFGAGVV 51 (97)
T ss_pred cCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc
Confidence 47888899999999999999999999999876
No 158
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=29.46 E-value=39 Score=31.20 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhhccCCccHh
Q 008299 227 ESIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 227 e~V~~tlLHELaHnvhg~Hd~~ 248 (570)
.....|++|||-|..-..|...
T Consensus 92 ~~~~~~~~HEiGHaLGL~H~~~ 113 (165)
T cd04268 92 ARLRNTAEHELGHALGLRHNFA 113 (165)
T ss_pred HHHHHHHHHHHHHHhcccccCc
Confidence 4689999999999998888765
No 159
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]
Probab=29.34 E-value=33 Score=37.19 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.2
Q ss_pred cchHHHHHHHHHHhhhhccCC
Q 008299 224 RKYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnvhg~ 244 (570)
++-|++..+++|||+|..+|+
T Consensus 185 ~~~ee~~yIilHEl~Hlk~gD 205 (337)
T COG4219 185 LTDEELKYIILHELSHLKRGD 205 (337)
T ss_pred cCHHhhhhhHhHHHhhhhccc
Confidence 566889999999999998875
No 160
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=29.21 E-value=1.4e+02 Score=27.23 Aligned_cols=44 Identities=9% Similarity=0.121 Sum_probs=34.5
Q ss_pred EEEEEECCEEE-EEEeCCCCCHHHHHHHHHHHhCCCC-CCceeeec
Q 008299 9 KVSAIWRGKKY-VVEVNSGSPLKELGHELQKLTDVKA-DTMRFIVP 52 (570)
Q Consensus 9 tItVkwrGk~~-~I~L~~daTV~dLK~~Ie~lTgVPp-e~QKLL~p 52 (570)
-|.|-....++ +++.+.++||+++-..|.+.+.+++ .+-.|.+.
T Consensus 4 ~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~ 49 (97)
T cd01775 4 CIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLK 49 (97)
T ss_pred EEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEE
Confidence 35666666665 6899999999999999999999988 45555543
No 161
>PF14891 Peptidase_M91: Effector protein
Probab=28.82 E-value=24 Score=34.10 Aligned_cols=19 Identities=26% Similarity=0.160 Sum_probs=15.0
Q ss_pred HHHHHHHhhhhccCCccHh
Q 008299 230 KKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 230 ~~tlLHELaHnvhg~Hd~~ 248 (570)
.-+|.|||+|..|.-++..
T Consensus 104 ~v~L~HEL~HA~~~~~Gt~ 122 (174)
T PF14891_consen 104 FVVLYHELIHAYDYMNGTM 122 (174)
T ss_pred HHHHHHHHHHHHHHHCCCC
Confidence 4689999999887766654
No 162
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=28.25 E-value=42 Score=34.11 Aligned_cols=40 Identities=30% Similarity=0.324 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHhhhhccCCcc-----HhHH-HHHHHHHHHHHHhh
Q 008299 225 KYESIKKTLLHELAHMVYSEHD-----ANFY-GLDKQLNQEAVALD 264 (570)
Q Consensus 225 p~e~V~~tlLHELaHnvhg~Hd-----~~F~-~L~~~L~~E~~~l~ 264 (570)
+-..-+-||.|||.|.+--.+. ..+- ....+++.||..+-
T Consensus 68 ~~~r~rFtlAHELGH~llH~~~~~~~~~~~~~~~~~~~E~~AN~FA 113 (213)
T COG2856 68 SLERKRFTLAHELGHALLHTDLNTRFDAEPTLQQDRKIEAEANAFA 113 (213)
T ss_pred CHHHHHHHHHHHHhHHHhccccchhhhcccccchhHHHHHHHHHHH
Confidence 5567788999999999954443 2222 46677888776654
No 163
>PF15639 Tox-MPTase3: Metallopeptidase toxin 3
Probab=28.08 E-value=25 Score=33.51 Aligned_cols=13 Identities=54% Similarity=0.726 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhh
Q 008299 228 SIKKTLLHELAHM 240 (570)
Q Consensus 228 ~V~~tlLHELaHn 240 (570)
.|-.|+||||.|-
T Consensus 99 ~v~~TlLHEliHw 111 (135)
T PF15639_consen 99 LVGSTLLHELIHW 111 (135)
T ss_pred EeehHHHHHHHHh
Confidence 4678999999994
No 164
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=27.52 E-value=2.1e+02 Score=22.82 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=37.3
Q ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 10 VSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 10 ItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
++|+++|+.++ ++...||.+|=.++ +++++.-.+-+ .|..+... . ..+.-|++|-+|-++
T Consensus 1 m~i~vNG~~~~--~~~~~tl~~lL~~l----~~~~~~vav~v---Ng~iv~r~-----~---~~~~~l~~gD~vei~ 60 (66)
T PRK05659 1 MNIQLNGEPRE--LPDGESVAALLARE----GLAGRRVAVEV---NGEIVPRS-----Q---HASTALREGDVVEIV 60 (66)
T ss_pred CEEEECCeEEE--cCCCCCHHHHHHhc----CCCCCeEEEEE---CCeEeCHH-----H---cCcccCCCCCEEEEE
Confidence 36899999775 45678988877654 88877766654 44322210 0 112346788887765
No 165
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=27.12 E-value=43 Score=31.17 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhhccCCccHh
Q 008299 227 ESIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 227 e~V~~tlLHELaHnvhg~Hd~~ 248 (570)
..+..|++|||-|..-..|...
T Consensus 102 ~~~~~~~~HEiGHaLGL~H~~~ 123 (156)
T cd04279 102 ENLQAIALHELGHALGLWHHSD 123 (156)
T ss_pred hHHHHHHHHHhhhhhcCCCCCC
Confidence 5789999999999998888755
No 166
>PF07998 Peptidase_M54: Peptidase family M54; InterPro: IPR012962 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry represents zinc-dependent peptidases belonging to the MEROPS peptidase family M54, more commonly known as the archaemetzincins. The family has a wide taxonomic distribution, being found in archaea, bacteria and eukaryotes. Two human homologues have been characterised []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 3LMC_A 2XHQ_A 2X7M_A.
Probab=25.93 E-value=47 Score=33.40 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=26.7
Q ss_pred ccccccCCccEEEEEe-ecC--CCCCccchHHHHHHHHHHhhhhccCCccHh
Q 008299 200 VLGFNKNHGEEISLRL-RTD--DLKGFRKYESIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 200 lLGlN~N~Gq~I~LRL-Rt~--d~~~Flp~e~V~~tlLHELaHnvhg~Hd~~ 248 (570)
+.|+-...|..-.+-+ |.. ..+.=+=.+.+.++++|||.|+.-.+|=.+
T Consensus 113 VFG~A~~~~~~aVvS~~~~~fy~~~~~l~~~R~~Kea~HElGH~~GL~HC~~ 164 (194)
T PF07998_consen 113 VFGLARPGGGVAVVSTSRNEFYGEDEELFLERVCKEAVHELGHLFGLDHCEN 164 (194)
T ss_dssp BSEEEECCSSEEEEEGGCGGGGTSSHHHHHHHHHHHHHHHHHHHTT----SS
T ss_pred EEEEeecCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHHHcCCcCCCC
Confidence 6676655444433333 331 111112258899999999999998888543
No 167
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=25.86 E-value=51 Score=32.51 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=15.9
Q ss_pred CccchHHHHHHHHHHhhhh
Q 008299 222 GFRKYESIKKTLLHELAHM 240 (570)
Q Consensus 222 ~Flp~e~V~~tlLHELaHn 240 (570)
.+.....+..||.|||.|.
T Consensus 64 ~~~~~~~l~~~l~HELIHa 82 (173)
T PF09768_consen 64 RIRSQGHLEDTLTHELIHA 82 (173)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 3566788999999999994
No 168
>PRK12765 flagellar capping protein; Provisional
Probab=25.83 E-value=1.2e+02 Score=35.26 Aligned_cols=35 Identities=14% Similarity=0.421 Sum_probs=30.7
Q ss_pred CeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHh
Q 008299 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLT 40 (570)
Q Consensus 6 ~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lT 40 (570)
..++|+|.++|++++|+++...|+.+|..+|-...
T Consensus 131 gt~tlti~~~g~~~tI~i~~~~TL~dl~~aIN~a~ 165 (595)
T PRK12765 131 GETDLTIFSNGKEYTITVDKSTTYRDLADKINEAS 165 (595)
T ss_pred CceEEEEEeCCEEEEEEECCCCCHHHHHHHHhcCc
Confidence 35788999999999999999999999999996653
No 169
>PF12140 DUF3588: Protein of unknown function (DUF3588); InterPro: IPR021987 This family of proteins is found in eukaryotes. Proteins in this family are typically between 129 and 866 amino acids in length, and the family is found in association with PF02820 from PFAM. The exact function of this family is not known.
Probab=25.67 E-value=1.9e+02 Score=27.11 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=26.2
Q ss_pred CCeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHH
Q 008299 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQK 38 (570)
Q Consensus 5 ~~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~ 38 (570)
++...|++++.||+|++.|+.-.++.++-.=|+.
T Consensus 67 ~~~~~i~a~~~gk~~~~~lp~v~s~~~v~~Fl~~ 100 (118)
T PF12140_consen 67 GEGEVISAKFDGKTHTVKLPTVNSASYVLRFLEK 100 (118)
T ss_pred CceeEEEEEEcCeEEEEEecccccHHHHHHHHHH
Confidence 3467899999999999999987777655444443
No 170
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=24.56 E-value=2.3e+02 Score=22.73 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=35.6
Q ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEec
Q 008299 10 VSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (570)
Q Consensus 10 ItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmG 87 (570)
++|+.+|+.+.+ ...||.+|-.++ ++.++.-.+-+ .+..+.. ....+.-|++|-+|-++-
T Consensus 1 m~i~~Ng~~~~~---~~~tl~~Ll~~l----~~~~~~vavav---N~~iv~~--------~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 1 MKLFVNGETLQT---EATTLALLLAEL----DYEGNWLATAV---NGELVHK--------EARAQFVLHEGDRIEILS 60 (65)
T ss_pred CEEEECCeEEEc---CcCcHHHHHHHc----CCCCCeEEEEE---CCEEcCH--------HHcCccccCCCCEEEEEE
Confidence 368889999888 346999988776 66654333333 3332210 011234567888887753
No 171
>PRK09672 phage exclusion protein Lit; Provisional
Probab=24.53 E-value=63 Score=34.72 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=20.9
Q ss_pred HHHHHHHHhhhhccCCccHhHHHHHHHHHHHHHHh
Q 008299 229 IKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVAL 263 (570)
Q Consensus 229 V~~tlLHELaHnvhg~Hd~~F~~L~~~L~~E~~~l 263 (570)
+--+++||++|++++.=.-.=.+.-.+.+.||+..
T Consensus 165 ~a~i~~HEiaHv~~~h~~~~~~e~s~~eE~eaDs~ 199 (305)
T PRK09672 165 LAWILLHEIAHVEFQHSSLESNEDSIQEEKEADSY 199 (305)
T ss_pred HHHHHHHHHHHHHhccccccCchHHHHHHHHHHHH
Confidence 45678999999998743323333334455555543
No 172
>PRK13267 archaemetzincin-like protein; Reviewed
Probab=24.42 E-value=53 Score=32.40 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHhhhhccCCccHh
Q 008299 226 YESIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 226 ~e~V~~tlLHELaHnvhg~Hd~~ 248 (570)
.+.+.++++|||.|+.-..|-.+
T Consensus 122 ~~R~~k~~~HElGH~lGL~HC~~ 144 (179)
T PRK13267 122 EERVRKEVTHELGHTLGLEHCDN 144 (179)
T ss_pred HHHHHHHHHHHHHHHcCCccCCC
Confidence 46788889999999999999443
No 173
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=23.53 E-value=45 Score=39.54 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhhhhccCCccH
Q 008299 226 YESIKKTLLHELAHMVYSEHDA 247 (570)
Q Consensus 226 ~e~V~~tlLHELaHnvhg~Hd~ 247 (570)
+..+..||.|||+||+-+.||.
T Consensus 320 ~~~~a~v~AhelgH~lGm~hD~ 341 (716)
T KOG3607|consen 320 LLAFAVVLAHELGHNLGMIHDE 341 (716)
T ss_pred chhHHHHHHHHHHhhcCccccc
Confidence 6778999999999999999999
No 174
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=22.88 E-value=43 Score=31.24 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHhhhhccCCccH
Q 008299 225 KYESIKKTLLHELAHMVYSEHDA 247 (570)
Q Consensus 225 p~e~V~~tlLHELaHnvhg~Hd~ 247 (570)
+...+..|++|||-|..-..|..
T Consensus 103 ~~~~~~~~~~HEiGHaLGL~H~~ 125 (157)
T cd04278 103 GGTDLFSVAAHEIGHALGLGHSS 125 (157)
T ss_pred ccchHHHHHHHHhccccccCCCC
Confidence 44679999999999999888874
No 175
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=22.74 E-value=1.3e+02 Score=23.38 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=17.6
Q ss_pred eEEEEEEECCEEEEEEeCCC
Q 008299 7 MLKVSAIWRGKKYVVEVNSG 26 (570)
Q Consensus 7 ~ItItVkwrGk~~~I~L~~d 26 (570)
.+++.|.|+|..+.|.+..+
T Consensus 9 ~l~F~~~~rg~~l~v~i~~~ 28 (54)
T PF03633_consen 9 SLSFRLRYRGHWLEVEITHE 28 (54)
T ss_dssp EEEEEEEETTEEEEEEEETT
T ss_pred EeEEEEEECCEEEEEEEECC
Confidence 58999999999999998655
No 176
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=22.05 E-value=44 Score=34.13 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHhhhhccCCcc
Q 008299 226 YESIKKTLLHELAHMVYSEHD 246 (570)
Q Consensus 226 ~e~V~~tlLHELaHnvhg~Hd 246 (570)
...++.||+||+.|....-.+
T Consensus 89 ~~~~~~~l~HE~GHAlI~~~~ 109 (220)
T PF14247_consen 89 IGNVLFTLYHELGHALIDDLD 109 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 356899999999998776554
No 177
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=21.64 E-value=82 Score=28.94 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=25.4
Q ss_pred EEEEEEECCEEEEEEeCCCCCHHHHHHHH
Q 008299 8 LKVSAIWRGKKYVVEVNSGSPLKELGHEL 36 (570)
Q Consensus 8 ItItVkwrGk~~~I~L~~daTV~dLK~~I 36 (570)
++|+|+.+++++.++|..+.|..+|.++|
T Consensus 1 mkI~i~i~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITIGGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEETTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEECCEEEEEEECCCHHHHHHHHhC
Confidence 47899999999999999999999988877
No 178
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=21.48 E-value=1.8e+02 Score=25.71 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=29.2
Q ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 008299 15 RGKKYVVEVNSGSPLKELGHELQKLTDVKAD 45 (570)
Q Consensus 15 rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe 45 (570)
+|.+|-|.+.++..+.+|+++|.+.+|+...
T Consensus 9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~ 39 (86)
T cd06409 9 KGRVHRFRLRPSESLEELRTLISQRLGDDDF 39 (86)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCccc
Confidence 7899999999999999999999999999875
No 179
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=20.66 E-value=58 Score=31.17 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhhccCCccHh
Q 008299 227 ESIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 227 e~V~~tlLHELaHnvhg~Hd~~ 248 (570)
.....|++|||-|..-..|.-.
T Consensus 111 ~~~~~t~~HEiGHaLGL~H~~~ 132 (186)
T cd04277 111 SYGYQTIIHEIGHALGLEHPGD 132 (186)
T ss_pred hhhHHHHHHHHHHHhcCCCCCc
Confidence 5578999999999998777543
Done!