Query 008299
Match_columns 570
No_of_seqs 293 out of 575
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 22:55:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3shq_A UBLCP1; phosphatase, hy 99.6 1.5E-15 5.3E-20 156.1 9.4 83 5-94 3-85 (320)
2 1v5t_A 8430435I17RIK protein; 99.5 7.6E-15 2.6E-19 124.1 7.4 80 5-91 5-85 (90)
3 1wgg_A Ubiquitin carboxyl-term 99.5 2.1E-14 7.4E-19 123.3 8.5 76 5-91 5-81 (96)
4 1v86_A DNA segment, CHR 7, way 99.5 9.7E-14 3.3E-18 118.7 8.8 77 5-92 15-91 (95)
5 1wxv_A BAG-family molecular ch 99.4 7.7E-13 2.6E-17 111.4 7.9 79 4-91 4-87 (92)
6 2dzm_A FAS-associated factor 1 99.3 2.8E-12 9.6E-17 112.0 7.6 75 6-89 8-82 (100)
7 2kd0_A LRR repeats and ubiquit 99.3 1E-11 3.5E-16 104.0 9.6 74 6-89 11-84 (85)
8 2bwf_A Ubiquitin-like protein 99.2 3.1E-11 1E-15 97.0 9.2 73 7-89 4-76 (77)
9 3m63_B Ubiquitin domain-contai 99.1 2E-11 6.8E-16 105.7 4.3 74 6-89 27-100 (101)
10 2hj8_A Interferon-induced 17 k 99.1 2.1E-10 7.1E-15 96.1 9.1 77 4-90 1-78 (88)
11 3phx_B Ubiquitin-like protein 99.1 1.8E-10 6.3E-15 93.6 8.4 74 4-87 1-75 (79)
12 2lxa_A Ubiquitin-like protein 99.1 4.5E-11 1.5E-15 101.6 4.8 74 8-91 2-80 (87)
13 4eew_A Large proline-rich prot 99.1 2.5E-10 8.5E-15 94.8 8.3 70 6-86 16-86 (88)
14 2dzi_A Ubiquitin-like protein 99.1 3.4E-10 1.2E-14 91.7 8.6 74 6-89 6-80 (81)
15 3m62_B UV excision repair prot 99.1 1.4E-10 4.7E-15 101.0 6.3 75 7-91 1-76 (106)
16 3v6c_B Ubiquitin; structural g 99.1 3.3E-10 1.1E-14 95.1 8.4 72 6-87 16-88 (91)
17 4a20_A Ubiquitin-like protein 99.1 1.7E-10 5.9E-15 100.1 6.4 75 6-90 18-97 (98)
18 2wyq_A HHR23A, UV excision rep 99.0 6.6E-10 2.2E-14 91.2 8.9 75 6-90 4-82 (85)
19 2kk8_A Uncharacterized protein 99.0 3.2E-10 1.1E-14 94.9 7.2 73 7-89 10-84 (84)
20 4hcn_B Polyubiquitin, ubiquiti 99.0 3.5E-10 1.2E-14 96.6 7.1 73 5-87 20-93 (98)
21 1yqb_A Ubiquilin 3; structural 99.0 5.4E-10 1.9E-14 96.4 8.2 79 1-89 16-94 (100)
22 4fbj_B NEDD8; effector-HOST ta 99.0 4E-10 1.4E-14 94.5 7.1 71 8-88 1-72 (88)
23 2klc_A Ubiquilin-1; ubiquitin- 99.0 6.4E-10 2.2E-14 96.0 8.6 74 6-89 24-97 (101)
24 1wx8_A Riken cDNA 4931431F19; 99.0 4.2E-10 1.4E-14 95.2 7.1 75 5-89 15-89 (96)
25 3mtn_B UBA80, ubcep1, ubiquiti 99.0 7.4E-10 2.5E-14 90.3 8.3 72 6-87 2-74 (85)
26 3dbh_I NEDD8; cell cycle, acti 99.0 7.1E-10 2.4E-14 91.3 8.1 72 6-87 11-83 (88)
27 1ndd_A NEDD8, protein (ubiquit 99.0 9E-10 3.1E-14 87.6 7.8 70 8-87 1-71 (76)
28 1uel_A HHR23B, UV excision rep 99.0 1.3E-09 4.3E-14 92.6 9.0 73 8-90 1-77 (95)
29 3n3k_B Ubiquitin; hydrolase, p 99.0 6E-10 2E-14 91.0 6.5 72 6-87 2-74 (85)
30 4dwf_A HLA-B-associated transc 99.0 1.2E-09 4.2E-14 91.0 8.4 74 6-90 4-78 (90)
31 2kan_A Uncharacterized protein 99.0 1.1E-09 3.8E-14 93.5 8.2 76 5-89 13-88 (94)
32 1v5o_A 1700011N24RIK protein; 99.0 1.1E-09 3.6E-14 94.5 8.0 74 6-88 6-84 (102)
33 3a9j_A Ubiquitin; protein comp 99.0 1.6E-09 5.4E-14 86.2 8.2 71 8-88 1-72 (76)
34 1ttn_A DC-UBP, dendritic cell- 99.0 1.6E-09 5.4E-14 94.0 8.7 75 6-90 22-97 (106)
35 1wh3_A 59 kDa 2'-5'-oligoadeny 99.0 2.1E-09 7.2E-14 88.7 8.9 73 6-88 6-79 (87)
36 2l7r_A Ubiquitin-like protein 98.9 1E-09 3.5E-14 93.1 6.6 71 6-87 18-88 (93)
37 1j8c_A Ubiquitin-like protein 98.9 2.7E-09 9.1E-14 95.9 9.5 77 6-92 31-107 (125)
38 1wy8_A NP95-like ring finger p 98.9 3.5E-09 1.2E-13 87.9 8.9 73 5-87 5-80 (89)
39 3k9o_B Ubiquitin, UBB+1; E2-25 98.9 2.4E-09 8.3E-14 90.0 8.1 71 8-88 2-73 (96)
40 1wgd_A Homocysteine-responsive 98.9 1.7E-09 5.7E-14 91.3 7.0 72 7-88 7-85 (93)
41 1wx7_A Ubiquilin 3; ubiquitin- 98.9 3E-09 1E-13 92.0 8.8 75 5-89 15-89 (106)
42 3vdz_A Ubiquitin-40S ribosomal 98.9 2.5E-09 8.4E-14 93.8 7.9 71 7-87 35-106 (111)
43 1yx5_B Ubiquitin; proteasome, 98.9 3.9E-09 1.3E-13 89.6 8.2 73 8-90 1-74 (98)
44 2faz_A Ubiquitin-like containi 98.9 4.6E-09 1.6E-13 84.9 7.7 71 7-87 2-75 (78)
45 1sif_A Ubiquitin; hydrophobic 98.9 3.9E-09 1.3E-13 88.4 7.3 69 10-88 13-81 (88)
46 3u30_A Ubiquitin, linear DI-ub 98.9 5.1E-09 1.7E-13 97.2 8.4 74 6-89 19-93 (172)
47 1v6e_A Cytoskeleton-associated 98.8 9.2E-09 3.1E-13 87.6 8.9 78 7-90 7-89 (95)
48 1we6_A Splicing factor, putati 98.8 6.6E-09 2.3E-13 90.7 8.2 72 6-87 26-102 (111)
49 1t0y_A Tubulin folding cofacto 98.8 6.9E-09 2.3E-13 92.6 8.4 85 3-90 2-88 (122)
50 2ojr_A Ubiquitin; lanthide-bin 98.8 8.5E-09 2.9E-13 90.1 8.7 73 6-88 34-107 (111)
51 3rt3_B Ubiquitin-like protein 98.8 7.7E-09 2.6E-13 94.4 8.3 73 8-89 3-77 (159)
52 1x1m_A Ubiquitin-like protein 98.8 4.9E-09 1.7E-13 91.2 6.5 74 7-90 12-101 (107)
53 1wju_A NEDD8 ultimate buster-1 98.8 6.3E-09 2.2E-13 91.1 6.7 73 7-89 15-92 (100)
54 1uh6_A Ubiquitin-like 5; beta- 98.8 8.5E-09 2.9E-13 90.3 6.9 73 4-86 25-98 (100)
55 3b1l_X E3 ubiquitin-protein li 98.2 8.7E-10 3E-14 88.6 0.0 70 8-87 1-71 (76)
56 3plu_A Ubiquitin-like modifier 98.8 1.5E-08 5.1E-13 87.8 7.5 71 5-85 19-90 (93)
57 1we7_A SF3A1 protein; structur 98.7 2.4E-08 8E-13 87.8 8.3 72 6-87 24-106 (115)
58 2kjr_A CG11242; UBL, ubiquitin 98.7 3.2E-08 1.1E-12 85.2 8.5 75 5-86 13-93 (95)
59 2kj6_A Tubulin folding cofacto 98.7 5.7E-08 1.9E-12 84.1 9.7 80 5-89 12-96 (97)
60 2kdi_A Ubiquitin, vacuolar pro 98.7 2.4E-08 8.3E-13 88.0 7.3 74 7-90 9-83 (114)
61 3b08_A Polyubiquitin-C, ubiqui 98.7 4E-08 1.4E-12 87.9 8.2 73 8-90 1-74 (152)
62 2kzr_A Ubiquitin thioesterase 98.6 6.4E-08 2.2E-12 80.8 8.0 78 8-90 1-79 (86)
63 1wia_A Hypothetical ubiquitin- 98.6 6.4E-08 2.2E-12 81.7 7.8 73 5-89 5-78 (95)
64 4b6w_A Tubulin-specific chaper 98.6 6.8E-08 2.3E-12 81.7 7.8 76 7-89 2-84 (86)
65 3q3f_A Ribonuclease/ubiquitin 98.6 5.5E-08 1.9E-12 93.6 7.9 72 7-88 105-177 (189)
66 3l0w_B Monoubiquitinated proli 98.6 1.1E-07 3.7E-12 89.4 8.8 71 9-89 2-73 (169)
67 3u5e_m 60S ribosomal protein L 98.6 6.3E-09 2.2E-13 93.2 0.0 71 9-89 2-73 (128)
68 3rt3_B Ubiquitin-like protein 98.6 1.1E-07 3.9E-12 86.7 8.3 72 7-88 81-153 (159)
69 2uyz_B Small ubiquitin-related 98.6 9.5E-08 3.3E-12 77.5 6.8 71 7-87 3-74 (79)
70 1oqy_A HHR23A, UV excision rep 98.6 6E-08 2E-12 101.8 6.9 75 6-90 6-84 (368)
71 3b08_A Polyubiquitin-C, ubiqui 98.5 1.6E-07 5.6E-12 83.9 8.1 72 7-88 76-148 (152)
72 1v2y_A 3300001G02RIK protein; 98.5 5.7E-08 2E-12 85.5 5.0 74 5-87 5-94 (105)
73 2daf_A FLJ35834 protein; hypot 98.5 1.1E-07 3.8E-12 85.6 6.6 74 6-89 14-89 (118)
74 2fnj_B Transcription elongatio 98.5 1.7E-07 5.6E-12 84.4 7.7 73 7-89 2-81 (118)
75 2kdb_A Homocysteine-responsive 98.5 1.1E-07 3.7E-12 82.5 6.1 71 6-86 22-99 (99)
76 3ai5_A Yeast enhanced green fl 98.5 2.4E-07 8.1E-12 95.2 8.9 73 5-87 231-304 (307)
77 1wyw_B Ubiquitin-like protein 98.5 2.8E-07 9.7E-12 78.6 7.0 72 6-87 20-92 (97)
78 3u30_A Ubiquitin, linear DI-ub 98.5 2.9E-07 1E-11 85.4 7.7 70 8-87 97-167 (172)
79 4ajy_B Transcription elongatio 98.4 4.5E-07 1.5E-11 81.7 8.0 71 7-87 2-79 (118)
80 3u5c_f 40S ribosomal protein S 98.4 2.7E-08 9.1E-13 92.6 0.0 71 8-88 1-72 (152)
81 1wjn_A Tubulin-folding protein 98.4 6.9E-07 2.4E-11 76.1 8.3 81 5-88 7-92 (97)
82 2dzj_A Synaptic glycoprotein S 98.3 1.3E-06 4.5E-11 73.9 7.8 71 7-85 10-85 (88)
83 2gow_A HCG-1 protein, ubiquiti 98.3 1.2E-06 4E-11 79.3 6.8 68 6-83 16-92 (125)
84 1wgh_A Ubiquitin-like 3, HCG-1 98.3 2.2E-06 7.5E-11 76.7 8.2 68 5-82 14-90 (116)
85 4dbg_A Ranbp-type and C3HC4-ty 98.2 3.4E-06 1.1E-10 74.5 8.9 61 17-87 37-98 (105)
86 1wf9_A NPL4 family protein; be 98.2 4.4E-06 1.5E-10 72.7 8.6 77 7-89 7-95 (107)
87 1se9_A Ubiquitin family; ubiqu 97.8 3.5E-05 1.2E-09 70.0 6.6 66 6-81 15-89 (126)
88 2pjh_A Protein NPL4, nuclear p 97.4 0.00016 5.5E-09 60.3 5.2 76 4-85 1-77 (80)
89 2xzm_9 RPS31E; ribosome, trans 97.4 2.4E-05 8.2E-10 75.5 0.0 49 9-60 2-51 (189)
90 4efo_A Serine/threonine-protei 97.3 0.00048 1.6E-08 59.8 6.8 68 15-90 22-90 (94)
91 3a4r_A Nfatc2-interacting prot 97.0 0.0027 9.3E-08 52.4 8.5 73 5-87 5-79 (79)
92 2io1_B Small ubiquitin-related 96.9 0.0019 6.5E-08 55.3 7.1 72 5-86 5-77 (94)
93 1wm3_A Ubiquitin-like protein 96.8 0.0035 1.2E-07 50.6 7.7 69 8-86 2-71 (72)
94 2io0_B Small ubiquitin-related 96.7 0.0052 1.8E-07 52.4 7.9 72 5-86 3-75 (91)
95 2k8h_A Small ubiquitin protein 96.4 0.0094 3.2E-07 52.7 8.2 73 6-88 25-98 (110)
96 1wz0_A Ubiquitin-like protein 96.4 0.014 4.8E-07 51.0 9.1 71 6-86 23-94 (104)
97 2eke_C Ubiquitin-like protein 96.3 0.0093 3.2E-07 52.5 7.7 71 6-86 30-100 (106)
98 2d07_B Ubiquitin-like protein 96.2 0.014 4.8E-07 49.6 7.8 71 6-86 16-87 (93)
99 3pge_A SUMO-modified prolifera 93.5 0.16 5.5E-06 49.3 7.7 72 5-86 27-98 (200)
100 3kyd_D Small ubiquitin-related 93.0 0.31 1.1E-05 43.5 8.1 71 6-86 39-110 (115)
101 3tix_A Ubiquitin-like protein 92.2 0.27 9.1E-06 48.0 6.9 72 5-86 55-126 (207)
102 2bps_A YUKD protein; ubiquitin 90.3 0.37 1.3E-05 40.6 5.2 73 6-85 3-80 (81)
103 3qx1_A FAS-associated factor 1 88.7 1.7 5.7E-05 35.8 8.0 73 5-85 5-80 (84)
104 2jxx_A Nfatc2-interacting prot 86.6 3.3 0.00011 35.7 8.9 73 5-87 23-97 (97)
105 1vd2_A Protein kinase C, IOTA 83.7 2.3 7.7E-05 36.4 6.3 43 4-46 3-45 (89)
106 1oey_A P67-PHOX, neutrophil cy 82.7 2.3 7.8E-05 36.0 5.9 46 6-52 4-49 (83)
107 2dzk_A UBX domain-containing p 82.6 7.2 0.00025 33.8 9.3 76 6-86 12-88 (109)
108 1ip9_A BEM1 protein; ubiquitin 82.6 3.4 0.00012 35.3 6.9 74 6-87 11-84 (85)
109 4a3p_A Ubiquitin carboxyl-term 81.5 4.6 0.00016 38.9 8.4 72 8-85 128-205 (217)
110 3v7o_A Minor nucleoprotein VP3 80.5 0.33 1.1E-05 47.9 0.0 71 6-86 20-90 (227)
111 3uf8_A Ubiquitin-like protein 80.4 4.1 0.00014 39.1 7.6 51 6-59 20-70 (209)
112 3cqb_A Probable protease HTPX 79.5 0.87 3E-05 39.3 2.3 22 224-245 78-99 (107)
113 2l76_A Nfatc2-interacting prot 78.0 6.9 0.00024 34.0 7.4 71 5-85 19-89 (95)
114 1wj4_A KIAA0794 protein; UBX d 77.4 7.2 0.00024 34.7 7.7 73 6-86 42-117 (124)
115 3ix6_A TS, tsase, thymidylate 77.1 0.48 1.7E-05 49.8 0.0 72 6-87 20-91 (360)
116 2al3_A TUG long isoform; TUG U 77.0 3.7 0.00013 35.3 5.5 73 8-90 10-83 (90)
117 4eut_A Serine/threonine-protei 75.8 7.2 0.00025 39.3 8.2 74 9-90 314-388 (396)
118 1wj6_A KIAA0049 protein, RSGI 74.7 11 0.00037 33.1 7.8 43 3-45 10-54 (101)
119 4aw6_A CAAX prenyl protease 1 74.6 1.3 4.5E-05 48.0 2.5 23 224-246 324-346 (482)
120 3jyu_A Ubiquitin carboxyl-term 74.0 15 0.0005 35.8 9.6 72 8-85 140-217 (231)
121 2bkf_A Zinc-finger protein NBR 72.6 9.5 0.00032 32.7 6.8 42 3-44 2-45 (87)
122 2kc2_A Talin-1, F1; FERM, adhe 72.0 4.3 0.00015 36.9 4.8 32 14-45 19-50 (128)
123 4da1_A Protein phosphatase 1K, 68.3 1 3.6E-05 46.6 0.0 71 6-86 29-99 (389)
124 2kvr_A Ubiquitin carboxyl-term 62.4 5.5 0.00019 35.9 3.5 33 19-51 58-90 (130)
125 3dte_A IRRE protein; radiotole 62.1 19 0.00065 36.7 7.9 59 170-246 54-113 (301)
126 2ddf_A ADAM 17; hydrolase; HET 60.4 4.4 0.00015 39.4 2.7 26 224-249 177-202 (257)
127 1bud_A Protein (acutolysin A); 59.4 4.2 0.00014 38.1 2.3 21 228-248 132-152 (197)
128 1qua_A Acutolysin-C, hemorrhag 59.1 3.8 0.00013 38.3 2.0 20 229-248 135-154 (197)
129 3b8z_A Protein adamts-5; alpha 59.0 4 0.00014 38.7 2.1 21 228-248 140-160 (217)
130 2w15_A Zinc metalloproteinase 57.7 4.6 0.00016 37.9 2.3 21 228-248 135-155 (202)
131 1atl_A Atrolysin C; metalloend 57.1 4.8 0.00016 37.9 2.3 20 229-248 136-155 (202)
132 1yp1_A FII; FII hydrolase; 1.9 56.6 4.7 0.00016 37.9 2.1 21 229-249 135-155 (202)
133 1kuf_A Atrolysin E, metallopro 56.5 4.9 0.00017 37.9 2.3 21 228-248 137-157 (203)
134 2v4b_A Adamts-1; zymogen, prot 56.2 4.6 0.00016 40.2 2.1 21 228-248 142-162 (300)
135 4dd8_A Disintegrin and metallo 55.3 6.4 0.00022 37.2 2.9 23 226-248 130-152 (208)
136 2i47_A ADAM 17; TACE-inhibitor 54.8 6.1 0.00021 39.1 2.7 26 224-249 183-208 (288)
137 2rjq_A Adamts-5; metalloprotea 54.4 5.1 0.00017 41.3 2.1 21 228-248 142-162 (378)
138 2rjp_A Adamts-4; metalloprotea 53.2 5.5 0.00019 40.0 2.1 21 228-248 142-162 (316)
139 3ivf_A Talin-1; FERM domain, c 52.3 33 0.0011 34.9 7.8 70 7-83 3-79 (371)
140 2daj_A KIAA0977 protein, COBL- 52.0 35 0.0012 29.4 6.5 68 5-79 8-76 (91)
141 3ebh_A PFA-M1, M1 family amino 51.4 6.2 0.00021 45.8 2.4 20 225-244 291-310 (889)
142 2gtq_A Aminopeptidase N; alani 49.6 6.9 0.00024 45.1 2.4 20 225-244 283-302 (867)
143 1r55_A ADAM 33; metalloproteas 49.4 7.1 0.00024 37.1 2.1 21 228-248 135-155 (214)
144 3c37_A Peptidase, M48 family; 48.3 7.3 0.00025 38.1 2.0 26 225-250 96-121 (253)
145 1z5h_A Tricorn protease intera 48.1 7.6 0.00026 44.0 2.5 23 222-244 252-274 (780)
146 4axq_A Archaemetzincin; metall 47.7 9.8 0.00033 35.5 2.7 21 226-246 111-131 (163)
147 3qa8_A MGC80376 protein; kinas 46.8 15 0.0005 41.3 4.5 38 15-52 320-357 (676)
148 3b34_A Aminopeptidase N; prote 46.4 8.3 0.00028 44.7 2.4 21 224-244 307-327 (891)
149 2ero_A VAP-1, vascular apoptos 46.3 9.1 0.00031 40.4 2.6 22 227-248 144-165 (427)
150 2dw0_A Catrocollastatin; apopt 46.3 9.2 0.00031 40.4 2.6 22 227-248 135-156 (419)
151 3r8s_T 50S ribosomal protein L 46.0 28 0.00096 29.8 5.1 36 17-52 28-63 (93)
152 2e3x_A Coagulation factor X-ac 45.4 9.6 0.00033 40.3 2.6 23 227-249 137-159 (427)
153 2xdt_A Endoplasmic reticulum a 44.7 9.1 0.00031 44.1 2.4 20 225-244 298-317 (897)
154 2ejq_A Hypothetical protein TT 44.6 9.2 0.00031 34.7 1.9 34 208-241 65-101 (130)
155 1g12_A Peptidyl-Lys metalloend 44.0 7.4 0.00025 36.1 1.3 15 227-241 109-123 (167)
156 4fke_A Aminopeptidase N; zinc 43.6 9.7 0.00033 43.9 2.4 25 221-245 308-332 (909)
157 1s3s_G P47 protein; AAA ATPase 42.8 51 0.0017 29.2 6.5 71 6-83 51-123 (127)
158 3u9w_A Leukotriene A-4 hydrola 42.4 6.1 0.00021 43.3 0.5 18 228-245 286-303 (608)
159 3k7n_A K-like; SVMP, hydrolase 41.8 11 0.00037 39.6 2.3 22 227-248 137-158 (397)
160 2cr5_A Reproduction 8; UBX dom 41.8 1.1E+02 0.0039 26.1 8.4 72 6-86 22-96 (109)
161 3k7l_A Atragin; SVMP, metallop 41.0 11 0.00039 39.9 2.3 22 227-248 142-163 (422)
162 3goe_A DNA repair protein RAD6 40.9 80 0.0027 26.7 6.9 70 7-86 9-80 (82)
163 1q1o_A Cell division control p 39.5 54 0.0019 28.5 5.9 37 7-43 5-49 (98)
164 1n62_A Carbon monoxide dehydro 39.0 24 0.00083 33.0 3.9 35 8-42 4-38 (166)
165 1ffv_A CUTS, iron-sulfur prote 38.0 26 0.00088 32.7 3.9 35 8-42 4-38 (163)
166 1eb6_A Neutral protease II; me 37.7 10 0.00036 35.4 1.2 15 228-242 121-135 (177)
167 2zjr_Q 50S ribosomal protein L 37.3 41 0.0014 28.9 4.8 34 19-52 25-58 (95)
168 1rm6_C 4-hydroxybenzoyl-COA re 35.9 30 0.001 32.0 4.0 36 7-42 2-37 (161)
169 3se6_A Endoplasmic reticulum a 35.8 16 0.00055 42.6 2.6 22 223-244 358-379 (967)
170 3tve_T 50S ribosomal protein L 35.5 35 0.0012 29.2 4.1 36 17-52 22-57 (92)
171 3lmc_A Peptidase, zinc-depende 34.7 19 0.00064 35.2 2.5 22 226-247 140-161 (210)
172 3e11_A Predicted zincin-like m 33.9 17 0.00059 32.0 1.9 16 226-241 87-102 (114)
173 3g5c_A ADAM 22; alpha/beta fol 33.3 21 0.00073 38.8 2.9 21 228-248 133-153 (510)
174 2x7m_A Archaemetzincin; metall 33.3 21 0.0007 34.3 2.5 20 226-245 136-155 (195)
175 1vq8_S 50S ribosomal protein L 33.1 41 0.0014 28.4 4.1 37 16-52 22-58 (85)
176 2xq0_A LTA-4 hydrolase, leukot 32.5 15 0.00052 40.5 1.7 16 229-244 295-310 (632)
177 1t3q_A Quinoline 2-oxidoreduct 32.2 40 0.0014 31.2 4.2 29 7-35 9-37 (168)
178 3cia_A Cold-active aminopeptid 32.1 16 0.00053 40.1 1.7 17 228-244 293-309 (605)
179 3onh_A Ubiquitin-activating en 31.7 74 0.0025 28.9 5.7 62 21-91 10-82 (127)
180 3qij_A Protein 4.1; cytoskelet 31.3 46 0.0016 33.0 4.8 42 3-44 13-55 (296)
181 2nnz_A Hypothetical protein; b 30.1 26 0.00089 32.5 2.5 34 3-36 25-61 (153)
182 3hrd_D Nicotinate dehydrogenas 29.3 39 0.0013 31.5 3.6 27 8-34 4-30 (160)
183 1ef1_A Moesin; membrane, FERM 28.0 93 0.0032 30.2 6.3 38 7-44 1-38 (294)
184 4fgm_A Aminopeptidase N family 27.6 26 0.00089 38.6 2.5 20 225-244 263-282 (597)
185 2ylm_A Ubiquitin carboxyl-term 27.4 34 0.0012 37.2 3.3 32 20-51 39-70 (530)
186 1tyg_B YJBS; alpha beta barrel 25.7 91 0.0031 26.1 4.9 63 7-86 18-81 (87)
187 3j21_T 50S ribosomal protein L 25.0 66 0.0023 27.2 3.9 37 16-52 23-59 (86)
188 2k5p_A THis protein, thiamine- 25.0 70 0.0024 26.1 4.0 61 11-86 2-63 (78)
189 2cu1_A Mitogen-activated prote 23.2 1.4E+02 0.0049 26.2 5.8 38 6-43 7-44 (103)
190 2qjl_A URM1, ubiquitin-related 22.6 1.3E+02 0.0045 25.0 5.4 33 8-40 2-45 (99)
191 1pq1_B BCL2-like protein 11; B 22.2 43 0.0015 23.7 1.8 16 541-556 10-25 (33)
192 2x3c_A Toxic extracellular end 20.3 32 0.0011 35.6 1.3 15 227-241 285-299 (343)
No 1
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.59 E-value=1.5e-15 Score=156.06 Aligned_cols=83 Identities=19% Similarity=0.411 Sum_probs=68.2
Q ss_pred CCeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 5 ~~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
.++|+|+|+|+|++|+|++++++||++||++|+++|||||++||||+++.+|+.+++ ..+|++++|++|.+||
T Consensus 3 ~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D-------~~~L~~~~ik~g~~l~ 75 (320)
T 3shq_A 3 VKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAAD-------NVKISALELKPNFKLM 75 (320)
T ss_dssp -CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCT-------TSBTTSSCCC--CEEE
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCc-------cccHHHcCCCCCCEEE
Confidence 357999999999999999999999999999999999999999999954337876663 2567889999999999
Q ss_pred EeccchhHHH
Q 008299 85 MMGVSEDEVD 94 (570)
Q Consensus 85 LmGS~~~EIe 94 (570)
||||++++|.
T Consensus 76 L~gs~~~~i~ 85 (320)
T 3shq_A 76 MVGSTEADIE 85 (320)
T ss_dssp EECCCC----
T ss_pred EEccchhhhc
Confidence 9999999875
No 2
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.54 E-value=7.6e-15 Score=124.12 Aligned_cols=80 Identities=24% Similarity=0.388 Sum_probs=69.2
Q ss_pred CCeEEEEEEECCEEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceE
Q 008299 5 GSMLKVSAIWRGKKYVV-EVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 5 ~~~ItItVkwrGk~~~I-~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
+.+|+|+|+|+|++|+| ++++++||.+||++|++.||||+++|||++++.+|+.|++ ..+|++++|++|.+|
T Consensus 5 ~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D-------~~~L~~~~i~~g~~l 77 (90)
T 1v5t_A 5 SSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEN-------DVKLGALKLKPNTKI 77 (90)
T ss_dssp CCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCT-------TSBHHHHTCCTTEEE
T ss_pred CceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCC-------CCCHHHcCCCCCCEE
Confidence 34689999999999999 9999999999999999999999999999932227876552 256888999999999
Q ss_pred EEeccchh
Q 008299 84 RMMGVSED 91 (570)
Q Consensus 84 mLmGS~~~ 91 (570)
+|||++++
T Consensus 78 ~l~~~~~~ 85 (90)
T 1v5t_A 78 MMMGTRES 85 (90)
T ss_dssp EEECCCSS
T ss_pred EEEecCcc
Confidence 99999875
No 3
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.52 E-value=2.1e-14 Score=123.30 Aligned_cols=76 Identities=26% Similarity=0.445 Sum_probs=68.7
Q ss_pred CCeEEEEEEECCEEE-EEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceE
Q 008299 5 GSMLKVSAIWRGKKY-VVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 5 ~~~ItItVkwrGk~~-~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
+.+|+|+|+|+|++| +|++++++||.+||++|+++||||+++|||++ +|+.|++ . +|++++|++|.+|
T Consensus 5 ~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~---~Gk~L~D-------~-tL~~~~I~~g~~i 73 (96)
T 1wgg_A 5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMV---KGGTLKD-------D-DWGNIKMKNGMTV 73 (96)
T ss_dssp CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEE---TTEECCS-------S-CCCSCCCCSSCEE
T ss_pred CcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCcCCCC-------C-CHHHCCCCCCCEE
Confidence 358999999999999 69999999999999999999999999999999 7876652 2 5788999999999
Q ss_pred EEeccchh
Q 008299 84 RMMGVSED 91 (570)
Q Consensus 84 mLmGS~~~ 91 (570)
+|||++.+
T Consensus 74 ~l~~~~~~ 81 (96)
T 1wgg_A 74 LMMGSADA 81 (96)
T ss_dssp ECCCCCCC
T ss_pred EEEecchh
Confidence 99999875
No 4
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=9.7e-14 Score=118.73 Aligned_cols=77 Identities=21% Similarity=0.361 Sum_probs=68.6
Q ss_pred CCeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 5 ~~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
+++|+|+|+|+|++|+|++++++||.+||++|++.||||+++|||++ +|+.| + + .+|.+++|++|.+|+
T Consensus 15 ~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~---~Gk~L-d----d---~tL~~~~i~~g~~i~ 83 (95)
T 1v86_A 15 KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY---KGLVP-E----D---KTLREIKVTSGAKIM 83 (95)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS---SSBCC-S----S---SBHHHHCCCTTEEEE
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCeeC-C----c---CcHHHCCCCCCCEEE
Confidence 45799999999999999999999999999999999999999999998 78755 2 1 268889999999999
Q ss_pred EeccchhH
Q 008299 85 MMGVSEDE 92 (570)
Q Consensus 85 LmGS~~~E 92 (570)
|||+++++
T Consensus 84 lv~~~~~~ 91 (95)
T 1v86_A 84 VVGSTISG 91 (95)
T ss_dssp ECCSSCCC
T ss_pred EEeccccC
Confidence 99998644
No 5
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=7.7e-13 Score=111.40 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=69.3
Q ss_pred CCCeEEEEEEECCEEEEEEeCCC-----CCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccC
Q 008299 4 LGSMLKVSAIWRGKKYVVEVNSG-----SPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSII 78 (570)
Q Consensus 4 ~~~~ItItVkwrGk~~~I~L~~d-----aTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk 78 (570)
++.+|+|+|+|+|++|+|+++++ .||.+||++|++.+|||+++|||++ +|+.|++. ..+|.+++++
T Consensus 4 ~~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~---~Gk~L~D~------~~~L~~~~i~ 74 (92)
T 1wxv_A 4 GSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF---KGKSLKEM------ETPLSALGIQ 74 (92)
T ss_dssp CCSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEE---TTEEECCS------SSBHHHHTCC
T ss_pred CCCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEE---CCeecCCC------cccHHHCCCC
Confidence 34579999999999999999995 9999999999999999999999999 78766531 2568899999
Q ss_pred CCceEEEeccchh
Q 008299 79 EGKSIRMMGVSED 91 (570)
Q Consensus 79 ~G~KImLmGS~~~ 91 (570)
+|.+|+|++++..
T Consensus 75 ~g~~i~l~~~~~~ 87 (92)
T 1wxv_A 75 DGCRVMLIGKKNS 87 (92)
T ss_dssp SSEEEEEESCCSC
T ss_pred CCCEEEEEecCCC
Confidence 9999999998754
No 6
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=2.8e-12 Score=111.97 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=64.4
Q ss_pred CeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 6 ~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
.++.|.|+|.|++|+|++++++||.+||++|+++|||||++|||++. |++++. | ..+|++++|++|.+|+|
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~--~~gkL~----D---~~tLs~~~I~~gstL~l 78 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGW--KTGDVE----D---STVLKSLHLPKNNSLYV 78 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECC--SSSCCC----T---TSBHHHHCCCSEEEEEE
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEcc--CCCCCC----C---cCCHHHcCCCCCCEEEE
Confidence 47899999999999999999999999999999999999999999963 445443 2 25688899999999999
Q ss_pred eccc
Q 008299 86 MGVS 89 (570)
Q Consensus 86 mGS~ 89 (570)
+-..
T Consensus 79 vl~~ 82 (100)
T 2dzm_A 79 LTPD 82 (100)
T ss_dssp CCSS
T ss_pred EecC
Confidence 7554
No 7
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.29 E-value=1e-11 Score=104.02 Aligned_cols=74 Identities=24% Similarity=0.426 Sum_probs=66.9
Q ss_pred CeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 6 ~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
.++.+.++|+|+++.|+++++.||.+||++|++.+|||+++|||++ +|+.|.+ ..+|+++|+++|.+|+|
T Consensus 11 ~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D-------~~tL~~~gi~~g~~l~l 80 (85)
T 2kd0_A 11 STIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF---KGKVLVE-------TSTLKQSDVGSGAKLML 80 (85)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE---TTEECCT-------TCBTTTTTCCTTEEEEE
T ss_pred CcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCeECCC-------cCCHHHCCCCCCCEEEE
Confidence 4788999999999999999999999999999999999999999999 6775542 25788999999999999
Q ss_pred eccc
Q 008299 86 MGVS 89 (570)
Q Consensus 86 mGS~ 89 (570)
++++
T Consensus 81 ~~s~ 84 (85)
T 2kd0_A 81 MASQ 84 (85)
T ss_dssp ECCC
T ss_pred EEeC
Confidence 9986
No 8
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.23 E-value=3.1e-11 Score=97.02 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=65.5
Q ss_pred eEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 7 ~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
.+.|.|+++|+++.++++++.||.+||.+|++.+|||+++|+|++ +|+.|.+ ..+|+++|+++|..|.|+
T Consensus 4 ~m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~---~gk~L~d-------~~tL~~~~i~~g~~i~l~ 73 (77)
T 2bwf_A 4 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY---SGKILKD-------DQTVESYHIQDGHSVHLV 73 (77)
T ss_dssp EEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TSBTGGGTCCTTCEEEEE
T ss_pred EEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE---CCeEcCC-------CCCHHHcCCCCCCEEEEE
Confidence 488999999999999999999999999999999999999999999 6765542 257889999999999999
Q ss_pred ccc
Q 008299 87 GVS 89 (570)
Q Consensus 87 GS~ 89 (570)
+++
T Consensus 74 ~~~ 76 (77)
T 2bwf_A 74 KSQ 76 (77)
T ss_dssp ECC
T ss_pred EcC
Confidence 875
No 9
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.14 E-value=2e-11 Score=105.69 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=65.6
Q ss_pred CeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 6 ~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
..|+|+|+|+|+++.|+++++.||.+||++|++.+|||+++|||++ +|+.|.+ ..+|+++|+++|.+|.|
T Consensus 27 m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~~~gI~~g~tI~l 96 (101)
T 3m63_B 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY---SGKILKD-------DQTVESYHIQDGHSVHL 96 (101)
T ss_dssp --CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE---TTEECCT-------TSBTTTTTCCTTEEEEE
T ss_pred cEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE---CCEECCC-------cCcHHHCCCCCCCEEEE
Confidence 4689999999999999999999999999999999999999999999 7876652 25788999999999999
Q ss_pred eccc
Q 008299 86 MGVS 89 (570)
Q Consensus 86 mGS~ 89 (570)
+.+.
T Consensus 97 v~~~ 100 (101)
T 3m63_B 97 VKSQ 100 (101)
T ss_dssp CCCC
T ss_pred EeCC
Confidence 9875
No 10
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.11 E-value=2.1e-10 Score=96.07 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=65.8
Q ss_pred CCCeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCce
Q 008299 4 LGSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKS 82 (570)
Q Consensus 4 ~~~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~K 82 (570)
|+..+.|.|++ .|+++.|+++++.||.+||.+|++.+|||++.|+|++ +|+.|.+ ..+|+++++++|..
T Consensus 1 m~~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D-------~~tL~~~~I~~g~~ 70 (88)
T 2hj8_A 1 MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKPLED-------QLPLGEYGLKPLST 70 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES---SSSCCCT-------TSBHHHHHCSTTCE
T ss_pred CCccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE---CCEECCC-------CCcHHHcCCCCCCE
Confidence 55689999998 4899999999999999999999999999999999999 6765542 25789999999999
Q ss_pred EEEeccch
Q 008299 83 IRMMGVSE 90 (570)
Q Consensus 83 ImLmGS~~ 90 (570)
|.|+....
T Consensus 71 i~l~~~~~ 78 (88)
T 2hj8_A 71 VFMNLRLR 78 (88)
T ss_dssp EEEEEC--
T ss_pred EEEEEEcC
Confidence 99987653
No 11
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.11 E-value=1.8e-10 Score=93.59 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=64.2
Q ss_pred CCCeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCce
Q 008299 4 LGSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKS 82 (570)
Q Consensus 4 ~~~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~K 82 (570)
|+..+.|.|++ .|+++.|+++++.||.+||++|++.+|||++.|+|++ +|+.|.+ ..+|+++++++|..
T Consensus 1 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~G~~L~d-------~~tL~~~~i~~~~~ 70 (79)
T 3phx_B 1 MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKPLED-------QLPLGEYGLKPLST 70 (79)
T ss_dssp --CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TSBGGGGTCCTTCE
T ss_pred CCCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE---CCEECCC-------CCcHHHCCCCCCCE
Confidence 34578999998 7899999999999999999999999999999999999 6776552 25789999999999
Q ss_pred EEEec
Q 008299 83 IRMMG 87 (570)
Q Consensus 83 ImLmG 87 (570)
|.|+-
T Consensus 71 l~l~~ 75 (79)
T 3phx_B 71 VFMNL 75 (79)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99874
No 12
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.11 E-value=4.5e-11 Score=101.64 Aligned_cols=74 Identities=14% Similarity=0.276 Sum_probs=63.8
Q ss_pred EEEEEEE-CCEEEEEE--eCCCCCHHHHHHHH-HHHhCCCCCCceeeeccCCCCCCCCCCCCcccccccccccc-CCCce
Q 008299 8 LKVSAIW-RGKKYVVE--VNSGSPLKELGHEL-QKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSI-IEGKS 82 (570)
Q Consensus 8 ItItVkw-rGk~~~I~--L~~daTV~dLK~~I-e~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gL-k~G~K 82 (570)
+.|+|+. .|++++|+ +++++||.+||++| ++.+|+|++.|||+| +|+.|.+ ..+|+++++ .+|.+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~~y~I~~~~st 71 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL---KGKVLHD-------NLFLSDLKVTPANST 71 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEE---TTEECCT-------TCBHHHHCCCGGGCE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEE---CCEECcC-------cCCHHHcCCCCCCCE
Confidence 6789988 67778876 45999999999999 999999999999999 7887763 257889999 69999
Q ss_pred EEEeccchh
Q 008299 83 IRMMGVSED 91 (570)
Q Consensus 83 ImLmGS~~~ 91 (570)
|+|+|++.-
T Consensus 72 l~v~~~~~~ 80 (87)
T 2lxa_A 72 ITVMIKPNL 80 (87)
T ss_dssp EEEEECCCC
T ss_pred EEEEcCCCc
Confidence 999999864
No 13
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.08 E-value=2.5e-10 Score=94.79 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=62.5
Q ss_pred CeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
..|.|.|++ +|+++.|+++++.||.+||.+|++.+|||++.|||++ +|+.|.+ ..+|+++++ +|.+|.
T Consensus 16 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~~~i-~g~~i~ 84 (88)
T 4eew_A 16 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY---QGRVLQD-------DKKLQEYNV-GGKVIH 84 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TSBGGGGTC-TTEEEE
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEECCC-------CCcHHHcCC-CCcEEE
Confidence 469999999 6999999999999999999999999999999999999 7876653 257889999 899998
Q ss_pred Ee
Q 008299 85 MM 86 (570)
Q Consensus 85 Lm 86 (570)
|+
T Consensus 85 lv 86 (88)
T 4eew_A 85 LV 86 (88)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 14
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=3.4e-10 Score=91.72 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=64.3
Q ss_pred CeEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
..+.|.|+ ++|+.+.++++++.||.+||++|++.+|||++.|+|++ +|+.|.+ ..+|+++|+++|..|.
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~---~gk~L~d-------~~tL~~~~i~~g~~i~ 75 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF---KGKALAD-------GKRLSDYSIGPNSKLN 75 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE---TTEECCT-------TSBGGGGTCCSSBCCE
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE---CCeECCC-------CCcHHHcCCCCCCEEE
Confidence 46888887 57899999999999999999999999999999999999 6765542 2578899999999999
Q ss_pred Eeccc
Q 008299 85 MMGVS 89 (570)
Q Consensus 85 LmGS~ 89 (570)
|+...
T Consensus 76 l~~~~ 80 (81)
T 2dzi_A 76 LVVKP 80 (81)
T ss_dssp EECCC
T ss_pred EEEeC
Confidence 98753
No 15
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.07 E-value=1.4e-10 Score=101.01 Aligned_cols=75 Identities=15% Similarity=0.278 Sum_probs=64.5
Q ss_pred eEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 7 MLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 7 ~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
+|.|.|++ +|++++|+++++.||.+||.+|++.+|||+++|||+| +|+.|.+ ..+|+++||++|..|.|
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~~~~i~~g~~i~l 70 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY---SGKVLQD-------SKTVSECGLKDGDQVVF 70 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE---TTEECCT-------TSBTTTTTCCTTCEEEE
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE---CCEECCC-------cCCHHHcCCCCCCEEEE
Confidence 36789996 8999999999999999999999999999999999999 7876652 25788999999999999
Q ss_pred eccchh
Q 008299 86 MGVSED 91 (570)
Q Consensus 86 mGS~~~ 91 (570)
+.+...
T Consensus 71 v~~~~~ 76 (106)
T 3m62_B 71 MVSQKK 76 (106)
T ss_dssp ECCC--
T ss_pred EEcCCC
Confidence 998754
No 16
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.06 E-value=3.3e-10 Score=95.06 Aligned_cols=72 Identities=15% Similarity=0.318 Sum_probs=64.3
Q ss_pred CeEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
..|.|.|+ ++|+++.|+++++.||.+||.+|++.+|||+++|+|++ +|+.|.+ ..+|+++|+++|.+|.
T Consensus 16 ~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D-------~~tL~~~gi~~g~~i~ 85 (91)
T 3v6c_B 16 GSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLH 85 (91)
T ss_dssp CSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCT-------TCBTGGGTCCTTCEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE---CCeECCC-------cCcHHHCCCCCCCEEE
Confidence 46899999 78999999999999999999999999999999999999 7876552 2578899999999999
Q ss_pred Eec
Q 008299 85 MMG 87 (570)
Q Consensus 85 LmG 87 (570)
|+.
T Consensus 86 l~~ 88 (91)
T 3v6c_B 86 LVL 88 (91)
T ss_dssp EEC
T ss_pred EEE
Confidence 975
No 17
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.05 E-value=1.7e-10 Score=100.11 Aligned_cols=75 Identities=12% Similarity=0.287 Sum_probs=65.0
Q ss_pred CeEEEEEEE-CCEEEEE--EeCCCCCHHHHHHHH-HHHhCCCCCCceeeeccCCCCCCCCCCCCcccccccccccc-CCC
Q 008299 6 SMLKVSAIW-RGKKYVV--EVNSGSPLKELGHEL-QKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSI-IEG 80 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I--~L~~daTV~dLK~~I-e~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gL-k~G 80 (570)
..|.|+|+. +|++|+| +++++.||.+||++| ++.+|+|+++||||| +|+.|.+ ..+|++++| ++|
T Consensus 18 ~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~dy~I~~~g 87 (98)
T 4a20_A 18 AAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL---KGKVLHD-------NLFLSDLKVTPAN 87 (98)
T ss_dssp CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEE---TTEEECT-------TCBGGGSCCBTTB
T ss_pred CCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEE---CCEECcC-------cCCHHHcCcCCCC
Confidence 479999998 6777776 566999999999999 999999999999999 7877663 257889999 999
Q ss_pred ceEEEeccch
Q 008299 81 KSIRMMGVSE 90 (570)
Q Consensus 81 ~KImLmGS~~ 90 (570)
..|+||++..
T Consensus 88 ~ti~lmvskp 97 (98)
T 4a20_A 88 STITVMIKPN 97 (98)
T ss_dssp CEEEEEECCC
T ss_pred CEEEEEEeCC
Confidence 9999999864
No 18
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.04 E-value=6.6e-10 Score=91.16 Aligned_cols=75 Identities=11% Similarity=0.175 Sum_probs=64.7
Q ss_pred CeEEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCc
Q 008299 6 SMLKVSAIWR-GKKYVVEVNSGSPLKELGHELQKL---TDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (570)
Q Consensus 6 ~~ItItVkwr-Gk~~~I~L~~daTV~dLK~~Ie~l---TgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~ 81 (570)
.++.|.|++. |+++.|+++++.||.+||++|++. +|||+++|+|++ +|+.|.+ ..+|+++++++|.
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~~~i~~g~ 73 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKILSD-------DVPIRDYRIDEKN 73 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE---TTEECCT-------TSBGGGGCCCTTS
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE---CCEECcC-------CCCHHHcCCCCCC
Confidence 3688999995 899999999999999999999997 999999999999 6775542 2578899999999
Q ss_pred eEEEeccch
Q 008299 82 SIRMMGVSE 90 (570)
Q Consensus 82 KImLmGS~~ 90 (570)
.|.|+.+..
T Consensus 74 ~i~l~~~~~ 82 (85)
T 2wyq_A 74 FVVVMVTKT 82 (85)
T ss_dssp EEEEEEC--
T ss_pred EEEEEEcCC
Confidence 999998765
No 19
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.04 E-value=3.2e-10 Score=94.92 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=63.6
Q ss_pred eEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCC-CCCCCCCccccccccccccCCCceEE
Q 008299 7 MLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSK-LLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 7 ~ItItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~-Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
-++|.|+ |.|++++|+++++.||.+||++|++.+|||+++|+|++ +|+. |.+ ..+|+++++++|..|.
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~lL~D-------~~tL~~y~I~~gs~i~ 79 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV---DGIVILRE-------DLTVEQCQIVPTSDIQ 79 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCCS-------SSBHHHHTCCTTSCEE
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE---CCEEecCC-------cCCHHHcCCCCCCEEE
Confidence 4677775 78999999999999999999999999999999999999 6775 442 2578999999999999
Q ss_pred Eeccc
Q 008299 85 MMGVS 89 (570)
Q Consensus 85 LmGS~ 89 (570)
|+..+
T Consensus 80 lv~~p 84 (84)
T 2kk8_A 80 LEVSS 84 (84)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 98754
No 20
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.03 E-value=3.5e-10 Score=96.59 Aligned_cols=73 Identities=19% Similarity=0.359 Sum_probs=63.7
Q ss_pred CCeEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceE
Q 008299 5 GSMLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 5 ~~~ItItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
+..|.|.|+ +.|+++.|.++++.||.+||++|++.+|||++.|||++ +|+.|.+ ..+|++++|++|..|
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~~~i~~g~~i 89 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTL 89 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCT-------TCBSGGGTCCTTEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE---CCEECCC-------CCcHHHCCCCCCCEE
Confidence 357899999 68999999999999999999999999999999999999 7876652 257889999999999
Q ss_pred EEec
Q 008299 84 RMMG 87 (570)
Q Consensus 84 mLmG 87 (570)
.|+.
T Consensus 90 ~l~~ 93 (98)
T 4hcn_B 90 HLVL 93 (98)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9974
No 21
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.02 E-value=5.4e-10 Score=96.38 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=68.1
Q ss_pred CCCCCCeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCC
Q 008299 1 MQDLGSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEG 80 (570)
Q Consensus 1 m~~~~~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G 80 (570)
|...+.+|.|.|++.+.++.|+++++.||.+||++|++.+|||+++|||++ +|+.|.+ ..+|+++++++|
T Consensus 16 ~~~~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~~ygI~~g 85 (100)
T 1yqb_A 16 PRGSPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF---AGKILKD-------PDSLAQCGVRDG 85 (100)
T ss_dssp CSCCTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TSBHHHHTCCTT
T ss_pred CCCCCCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-------cCcHHHCCCCCC
Confidence 344557899999998777899999999999999999999999999999999 6765542 257899999999
Q ss_pred ceEEEeccc
Q 008299 81 KSIRMMGVS 89 (570)
Q Consensus 81 ~KImLmGS~ 89 (570)
.+|.|+...
T Consensus 86 stI~l~~r~ 94 (100)
T 1yqb_A 86 LTVHLVIKR 94 (100)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEEcC
Confidence 999998764
No 22
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.02 E-value=4e-10 Score=94.49 Aligned_cols=71 Identities=10% Similarity=0.297 Sum_probs=62.2
Q ss_pred EEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 8 LKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 8 ItItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
+.|.|+ +.|++++|++++++||.+||++|++.+|||++.|||++ +|+.|.+ ..+|+++++++|.+|.|+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~~~i~~g~~l~l~ 70 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQMND-------EKTAADYKILGGSVLHLV 70 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCT-------TSBTTTTTCCTTCEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE---CCeECCC-------CCcHHHcCCCCCCEEEEE
Confidence 357888 68999999999999999999999999999999999999 7876652 257889999999999998
Q ss_pred cc
Q 008299 87 GV 88 (570)
Q Consensus 87 GS 88 (570)
-.
T Consensus 71 ~r 72 (88)
T 4fbj_B 71 LA 72 (88)
T ss_dssp CB
T ss_pred EE
Confidence 43
No 23
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.02 E-value=6.4e-10 Score=95.97 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=66.2
Q ss_pred CeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 6 ~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
..+.|.|++.|+++.|+++++.||.+||.+|++.+|||++.|||++ +|+.|.+ ..+|+++|+++|..|.|
T Consensus 24 ~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~~gI~~g~~I~l 93 (101)
T 2klc_A 24 KIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF---AGKILKD-------QDTLSQHGIHDGLTVHL 93 (101)
T ss_dssp CCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE---TTEEECT-------TCCTGGGTCCTTCEEEE
T ss_pred CeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-------cCcHHHcCCCCCCEEEE
Confidence 4799999999999999999999999999999999999999999999 6775542 25788999999999999
Q ss_pred eccc
Q 008299 86 MGVS 89 (570)
Q Consensus 86 mGS~ 89 (570)
+...
T Consensus 94 ~~~~ 97 (101)
T 2klc_A 94 VIKT 97 (101)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9764
No 24
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.02 E-value=4.2e-10 Score=95.19 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=66.2
Q ss_pred CCeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 5 ~~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
..+|.|.|++.|+++.|+++++.||.+||++|++.+|||+++|+|++ +|+.|.+ ..+|+++++++|.+|.
T Consensus 15 ~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D-------~~tL~~~gi~~g~~i~ 84 (96)
T 1wx8_A 15 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF---TGKILRD-------QDILSQRGILDGSTVH 84 (96)
T ss_dssp SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE---TTEECCT-------TSCHHHHTCCTTEEEE
T ss_pred CCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEECCC-------cCCHHHCCCCCCCEEE
Confidence 35799999999999999999999999999999999999999999999 6776542 2578899999999999
Q ss_pred Eeccc
Q 008299 85 MMGVS 89 (570)
Q Consensus 85 LmGS~ 89 (570)
|+...
T Consensus 85 l~~~~ 89 (96)
T 1wx8_A 85 VVVRS 89 (96)
T ss_dssp CCBCC
T ss_pred EEEeC
Confidence 88643
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.02 E-value=7.4e-10 Score=90.30 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=62.9
Q ss_pred CeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
+++.|.|++ .|+++.|++++++||.+||++|++.++||+++|+|++ +|..|.+ ..+|+++++++|.+|.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~---~g~~L~d-------~~tL~~~~i~~~~~l~ 71 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKWSTLF 71 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCT-------TSBTGGGTCCTTCEEE
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE---CCEECCC-------CCCHHHcCCCCCCEEE
Confidence 468899997 6799999999999999999999999999999999999 6776552 2578899999999999
Q ss_pred Eec
Q 008299 85 MMG 87 (570)
Q Consensus 85 LmG 87 (570)
|+-
T Consensus 72 l~~ 74 (85)
T 3mtn_B 72 LLL 74 (85)
T ss_dssp EEC
T ss_pred EEE
Confidence 974
No 26
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.01 E-value=7.1e-10 Score=91.33 Aligned_cols=72 Identities=10% Similarity=0.275 Sum_probs=63.8
Q ss_pred CeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
..+.|.|+. .|+++.|.++++.||.+||.+|++.+|||++.|+|++ +|+.|.+ ..+|+++++++|..|.
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~G~~L~d-------~~tL~~~~i~~~~~i~ 80 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQMND-------EKTAADYKILGGSVLH 80 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEECCT-------TSBGGGGTCCTTCEEE
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE---CCeECCC-------CCcHHHcCCCCCCEEE
Confidence 468999995 8999999999999999999999999999999999999 7876552 2578899999999999
Q ss_pred Eec
Q 008299 85 MMG 87 (570)
Q Consensus 85 LmG 87 (570)
|+-
T Consensus 81 l~~ 83 (88)
T 3dbh_I 81 LVL 83 (88)
T ss_dssp ECC
T ss_pred EEE
Confidence 874
No 27
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=98.99 E-value=9e-10 Score=87.63 Aligned_cols=70 Identities=10% Similarity=0.287 Sum_probs=61.3
Q ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 8 ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
+.|.|++ .|+++.+++++++||.+||.+|++.+|||++.|+|++ +|+.|.+ ..+|+++|+++|.+|.|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~---~g~~L~d-------~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQMND-------EKTAADYKILGGSVLHLV 70 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TSBGGGGTCCTTCEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE---CCEECCC-------CCcHHHcCCCCCCEEEEE
Confidence 4688998 6899999999999999999999999999999999999 6765542 257889999999999987
Q ss_pred c
Q 008299 87 G 87 (570)
Q Consensus 87 G 87 (570)
-
T Consensus 71 ~ 71 (76)
T 1ndd_A 71 L 71 (76)
T ss_dssp E
T ss_pred E
Confidence 4
No 28
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.99 E-value=1.3e-09 Score=92.63 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=63.9
Q ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceE
Q 008299 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKL---TDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 8 ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~l---TgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
+.|.|++ .|+.++|+++++.||.+||.+|++. +|||+++|+|++ +|+.|.+ ..+|+++|+++|.+|
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~ygI~~g~~i 70 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY---AGKILND-------DTALKEYKIDEKNFV 70 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE---TTEECCT-------TSBGGGGTCCSSSEE
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE---CCEECCC-------cCcHHHCCCCCCCEE
Confidence 4689998 5899999999999999999999999 899999999999 6776542 257899999999999
Q ss_pred EEeccch
Q 008299 84 RMMGVSE 90 (570)
Q Consensus 84 mLmGS~~ 90 (570)
.|+....
T Consensus 71 ~l~~~~~ 77 (95)
T 1uel_A 71 VVMVTKP 77 (95)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 9998753
No 29
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.98 E-value=6e-10 Score=91.04 Aligned_cols=72 Identities=17% Similarity=0.335 Sum_probs=61.9
Q ss_pred CeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
.++.|.|++ .|++++|++++++||.+||++|++.++||+++|+|++ +|+.|.+ ..+|+++++++|.+|.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~---~g~~L~d-------~~tL~~~~i~~~~~i~ 71 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIHNHSALY 71 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TBEECCT-------TCBTTTTTCCTTCEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCeECCC-------CCCHHHCCCCCCCEEE
Confidence 367899984 7899999999999999999999999999999999999 6775542 2578899999999999
Q ss_pred Eec
Q 008299 85 MMG 87 (570)
Q Consensus 85 LmG 87 (570)
|+-
T Consensus 72 l~~ 74 (85)
T 3n3k_B 72 LLL 74 (85)
T ss_dssp EEE
T ss_pred EEE
Confidence 974
No 30
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=98.98 E-value=1.2e-09 Score=90.95 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=65.0
Q ss_pred CeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
.+|.|.|++ .|+++.|++.++.||.+||.+|++.+|||++.|||++ +|+.|.+ ..+|+++++ +|..|.
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~L~d-------~~tL~~~~i-~g~~i~ 72 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY---QGRVLQD-------DKKLQEYNV-GGKVIH 72 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TSBGGGGTC-TTEEEE
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCeECCC-------CCCHHHcCC-CCcEEE
Confidence 478999999 5899999999999999999999999999999999999 7876652 257889999 899999
Q ss_pred Eeccch
Q 008299 85 MMGVSE 90 (570)
Q Consensus 85 LmGS~~ 90 (570)
|+-...
T Consensus 73 l~~~~~ 78 (90)
T 4dwf_A 73 LVERAP 78 (90)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 987643
No 31
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.98 E-value=1.1e-09 Score=93.45 Aligned_cols=76 Identities=20% Similarity=0.278 Sum_probs=65.9
Q ss_pred CCeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 5 ~~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
...|.|.|+|.+.+++|+++++.||.+||.+|++.+|||+++|+|++ +|+.|.+ + ..+|+++++++|.+|.
T Consensus 13 ~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D----~--~~tL~~ygI~~gstl~ 83 (94)
T 2kan_A 13 VRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY---SGIELAD----D--YRNLNEYGITEFSEIV 83 (94)
T ss_dssp SCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE---TTEEECC----T--TSBHHHHTCCTTEEEE
T ss_pred CCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE---CCEECCC----C--cccHHHCCCCCCCEEE
Confidence 35799999998889999999999999999999999999999999999 6776542 1 1568899999999999
Q ss_pred Eeccc
Q 008299 85 MMGVS 89 (570)
Q Consensus 85 LmGS~ 89 (570)
|+...
T Consensus 84 lv~r~ 88 (94)
T 2kan_A 84 VFLKS 88 (94)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 98653
No 32
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.97 E-value=1.1e-09 Score=94.49 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=62.6
Q ss_pred CeEEEEEEE--CC---EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCC
Q 008299 6 SMLKVSAIW--RG---KKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEG 80 (570)
Q Consensus 6 ~~ItItVkw--rG---k~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G 80 (570)
..+.|+|++ ++ ++|+|+++++.||.+||++|++.+|||+++|||++ +|+.|.+ + ..+|.+++|++|
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~gk~L~D----~--~~tL~~ygI~~g 76 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY---MEQLLTD----D--HCSLGSYGLKDG 76 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE---TTEEECC----S--SSBHHHHTCCTT
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE---CCEECCC----C--cccHHHCCCCCC
Confidence 357777777 54 89999999999999999999999999999999999 6765542 1 246889999999
Q ss_pred ceEEEecc
Q 008299 81 KSIRMMGV 88 (570)
Q Consensus 81 ~KImLmGS 88 (570)
..|+|+..
T Consensus 77 ~~l~l~~~ 84 (102)
T 1v5o_A 77 DMVVLLQK 84 (102)
T ss_dssp EEEEECBC
T ss_pred CEEEEEEC
Confidence 99999864
No 33
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=98.96 E-value=1.6e-09 Score=86.19 Aligned_cols=71 Identities=17% Similarity=0.316 Sum_probs=61.4
Q ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 8 ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
+.|.|++ .|+++.+++++++||.+||.+|++.+|+|++.|+|++ +|..|.+ ..+|+++++++|..|.|+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~---~g~~L~d-------~~tL~~~~i~~g~~i~l~ 70 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQRESTLHLV 70 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TCBTGGGTCCTTCEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCeECCC-------CCcHHHcCCCCCCEEEEE
Confidence 4688887 6899999999999999999999999999999999999 6765542 257889999999999987
Q ss_pred cc
Q 008299 87 GV 88 (570)
Q Consensus 87 GS 88 (570)
-.
T Consensus 71 ~~ 72 (76)
T 3a9j_A 71 LR 72 (76)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 34
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.96 E-value=1.6e-09 Score=94.03 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=66.3
Q ss_pred CeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
..|.|.|++ .|+++.|+++++.||.+||.+|++.+|||+++|+|++ +|+.|.+ ..+|+++|+++|..|.
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~ygI~~g~ti~ 91 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF---SGRPLTD-------KMKFEELKIPKDYVVQ 91 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE---TTEECCT-------TSHHHHCCCSSSCEEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE---CCEECCC-------CCcHHHcCCCCCCEEE
Confidence 469999998 6999999999999999999999999999999999999 6765542 2578999999999999
Q ss_pred Eeccch
Q 008299 85 MMGVSE 90 (570)
Q Consensus 85 LmGS~~ 90 (570)
|+....
T Consensus 92 lv~~~~ 97 (106)
T 1ttn_A 92 VIVSQP 97 (106)
T ss_dssp EECCCS
T ss_pred EEEeCC
Confidence 998653
No 35
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.96 E-value=2.1e-09 Score=88.67 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=63.9
Q ss_pred CeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
..+.|.|++ .|+++.|+++++.||.+||++|++.+|||+++|+|++ +|..|.+ ..+|+++++++|.+|.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~---~Gk~L~d-------~~tL~~~~i~~g~~i~ 75 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF---QGQVLQD-------WLGLGIYGIQDSDTLI 75 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE---TTEECCS-------SSBHHHHTCCTTEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE---CCEEccC-------CCCHHHCCCCCCCEEE
Confidence 368999998 5899999999999999999999999999999999999 6765542 2578899999999999
Q ss_pred Eecc
Q 008299 85 MMGV 88 (570)
Q Consensus 85 LmGS 88 (570)
|+..
T Consensus 76 l~~~ 79 (87)
T 1wh3_A 76 LSKK 79 (87)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8754
No 36
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.94 E-value=1e-09 Score=93.13 Aligned_cols=71 Identities=10% Similarity=0.187 Sum_probs=61.9
Q ss_pred CeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 6 ~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
..+.|.|++ |+++.|+++++.||.+||++|++.+|||+++|+|++ +|+.|.+ ..+|+++++++|..|.|
T Consensus 18 ~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~y~I~~gstI~l 86 (93)
T 2l7r_A 18 GSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL---AGAPLED-------EATLGQCGVEALTTLEV 86 (93)
T ss_dssp --CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE---TTEECCT-------TSBHHHHTCCSSCEEEE
T ss_pred CcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE---CCEECCC-------CCcHHHCCCCCCCEEEE
Confidence 358999999 899999999999999999999999999999999999 6765542 25788999999999998
Q ss_pred ec
Q 008299 86 MG 87 (570)
Q Consensus 86 mG 87 (570)
+-
T Consensus 87 v~ 88 (93)
T 2l7r_A 87 AG 88 (93)
T ss_dssp EC
T ss_pred EE
Confidence 74
No 37
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.93 E-value=2.7e-09 Score=95.92 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=66.0
Q ss_pred CeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 6 ~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
..|.|.|++.|++++|+++++.||.+||.+|++.+|||+++|||+| +|+.|.+ ..+|.+++|++|.+|.|
T Consensus 31 ~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~dygI~~gstI~l 100 (125)
T 1j8c_A 31 KIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIF---AGKILKD-------QDTLIQHGIHDGLTVHL 100 (125)
T ss_dssp CCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE---TTEEEST-------TSCGGGTTCSSSEEEEE
T ss_pred CcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEE---CCEEcCC-------CCCHHHcCCCCCCEEEE
Confidence 4799999999999999999999999999999999999999999999 6876642 25788999999999999
Q ss_pred eccchhH
Q 008299 86 MGVSEDE 92 (570)
Q Consensus 86 mGS~~~E 92 (570)
+.....-
T Consensus 101 v~~~~gg 107 (125)
T 1j8c_A 101 VIKRDPN 107 (125)
T ss_dssp EEC----
T ss_pred EeccCCC
Confidence 9876543
No 38
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.92 E-value=3.5e-09 Score=87.88 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=62.9
Q ss_pred CCeEEEEEEEC-C-EEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCc
Q 008299 5 GSMLKVSAIWR-G-KKYVV-EVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (570)
Q Consensus 5 ~~~ItItVkwr-G-k~~~I-~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~ 81 (570)
+..+.|.|++. | +++.| +++++.||.+||++|++.+|||++.|+|++ +|+.|.+ ..+|+++++++|.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~gk~L~d-------~~tL~~~~i~~g~ 74 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY---RGKQLEN-------GYTLFDYDVGLND 74 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE---TTEECCS-------SSBHHHHTCCTTC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE---CCeECCC-------CCCHHHCCCCCCC
Confidence 35799999984 6 69999 599999999999999999999999999999 6765542 2578899999999
Q ss_pred eEEEec
Q 008299 82 SIRMMG 87 (570)
Q Consensus 82 KImLmG 87 (570)
.|.|+-
T Consensus 75 ~i~l~~ 80 (89)
T 1wy8_A 75 IIQLLV 80 (89)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999874
No 39
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=98.92 E-value=2.4e-09 Score=89.98 Aligned_cols=71 Identities=17% Similarity=0.320 Sum_probs=62.3
Q ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 8 ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
|.|.|++ .|+++.|+++++.||.+||.+|++.+|||+++|+|++ +|..|.+ ..+|+++++++|..|.|+
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~---~G~~L~d-------~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TSBTGGGTCCTTCEEEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE---CCEECCC-------CCcHHHcCCCCCCEEEEE
Confidence 5688886 6899999999999999999999999999999999999 7876652 257889999999999998
Q ss_pred cc
Q 008299 87 GV 88 (570)
Q Consensus 87 GS 88 (570)
..
T Consensus 72 ~r 73 (96)
T 3k9o_B 72 LR 73 (96)
T ss_dssp EC
T ss_pred EE
Confidence 54
No 40
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.92 E-value=1.7e-09 Score=91.28 Aligned_cols=72 Identities=13% Similarity=0.186 Sum_probs=61.1
Q ss_pred eEEEEEEECCE---EEEEEeCCCCCHHHHHHHHHHHh--CCCCCCceeeeccCCCCCCCCCCCCcccccccccc--ccCC
Q 008299 7 MLKVSAIWRGK---KYVVEVNSGSPLKELGHELQKLT--DVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEV--SIIE 79 (570)
Q Consensus 7 ~ItItVkwrGk---~~~I~L~~daTV~dLK~~Ie~lT--gVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~--gLk~ 79 (570)
.|.|+|+|.+. +++|++++++||.+||++|++.+ +||+++|||+| +|+.|.+ ..+|+++ ++++
T Consensus 7 ~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~---~Gk~L~D-------~~tL~~~~~~i~~ 76 (93)
T 1wgd_A 7 GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY---SGKLLLD-------HQCLRDLLPKQEK 76 (93)
T ss_dssp CCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE---TTEECCS-------SSCHHHHSCSSSC
T ss_pred EEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE---CCEECcC-------cCCHHHHhcCCCC
Confidence 68999999755 35667779999999999999999 99999999999 7876653 2568889 9999
Q ss_pred CceEEEecc
Q 008299 80 GKSIRMMGV 88 (570)
Q Consensus 80 G~KImLmGS 88 (570)
|..|+|+-.
T Consensus 77 ~~~i~lv~~ 85 (93)
T 1wgd_A 77 RHVLHLVCN 85 (93)
T ss_dssp SEEEEEECC
T ss_pred CCEEEEEeC
Confidence 999999853
No 41
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.92 E-value=3e-09 Score=91.99 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=65.4
Q ss_pred CCeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 5 ~~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
+.+|.|.|++.+.++.|+++++.||.+||.+|++.+|||+++|||++ +|+.|.+ ..+|.+++|++|..|.
T Consensus 15 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~~gi~~g~~i~ 84 (106)
T 1wx7_A 15 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF---AGKILKD-------PDSLAQCGVRDGLTVH 84 (106)
T ss_dssp SSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE---TTEECCT-------TSCHHHHTCCTTEEEE
T ss_pred CceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-------cCcHHHcCCCCCCEEE
Confidence 35799999998767899999999999999999999999999999999 6775542 2578899999999999
Q ss_pred Eeccc
Q 008299 85 MMGVS 89 (570)
Q Consensus 85 LmGS~ 89 (570)
|+...
T Consensus 85 l~~~~ 89 (106)
T 1wx7_A 85 LVIKR 89 (106)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 98754
No 42
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=98.90 E-value=2.5e-09 Score=93.77 Aligned_cols=71 Identities=17% Similarity=0.339 Sum_probs=63.5
Q ss_pred eEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 7 MLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 7 ~ItItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
.|.|.|+ ++|+++.|.++++.||.+||.+|++.+|||++.|||++ +|+.|.+ ..+|+++++++|.+|.|
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~~~gI~~gs~I~l 104 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHL 104 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TSBTTTTTCCTTCEEEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE---CCEECCC-------CCcHHHCCCCCCCEEEE
Confidence 6899998 68999999999999999999999999999999999999 7876652 25788999999999998
Q ss_pred ec
Q 008299 86 MG 87 (570)
Q Consensus 86 mG 87 (570)
+-
T Consensus 105 ~~ 106 (111)
T 3vdz_A 105 VL 106 (111)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 43
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=98.88 E-value=3.9e-09 Score=89.63 Aligned_cols=73 Identities=16% Similarity=0.303 Sum_probs=63.3
Q ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 8 ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
+.|.|++ .|+++.|+++++.||.+||.+|++.+|||++.|+|++ +|+.|.+ ..+|+++|+++|..|.|+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~---~Gk~L~D-------~~tL~~~gi~~g~~i~l~ 70 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLV 70 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE---TTEECCT-------TSBTGGGTCCTTCEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-------CCCHHHcCCCCCCEEEEE
Confidence 4688988 6889999999999999999999999999999999999 6765542 257889999999999998
Q ss_pred ccch
Q 008299 87 GVSE 90 (570)
Q Consensus 87 GS~~ 90 (570)
....
T Consensus 71 ~~~~ 74 (98)
T 1yx5_B 71 LRLR 74 (98)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 7643
No 44
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.87 E-value=4.6e-09 Score=84.93 Aligned_cols=71 Identities=15% Similarity=0.282 Sum_probs=60.7
Q ss_pred eEEEEEEEC-CEE-EEEE-eCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceE
Q 008299 7 MLKVSAIWR-GKK-YVVE-VNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 7 ~ItItVkwr-Gk~-~~I~-L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
.+.|.|++. |++ +.|+ ++++.||.+||++|++.+|||++.|+|++ +|+.|.+ ..+|+++|+++|..|
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~---~g~~L~d-------~~tL~~~~i~~g~~i 71 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY---RGKQMED-------GHTLFDYEVRLNDTI 71 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TCBTTTTTCCTTCEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-------CCCHHHcCCCCCCEE
Confidence 478899884 777 5999 99999999999999999999999999999 6765542 257889999999999
Q ss_pred EEec
Q 008299 84 RMMG 87 (570)
Q Consensus 84 mLmG 87 (570)
.|+-
T Consensus 72 ~l~~ 75 (78)
T 2faz_A 72 QLLV 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
No 45
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=98.86 E-value=3.9e-09 Score=88.43 Aligned_cols=69 Identities=19% Similarity=0.355 Sum_probs=59.7
Q ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEecc
Q 008299 10 VSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMGV 88 (570)
Q Consensus 10 ItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmGS 88 (570)
+..++.|+++.|+++++.||.+||++|++.+|||+++|||++ +|+.|.+ ..+|+++++++|.+|.|+..
T Consensus 13 ~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D-------~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 13 FIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp EEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCT-------TSBSGGGTCCTTCEEEEEC-
T ss_pred EEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-------CCcHHHcCCCCCCEEEEEEe
Confidence 334689999999999999999999999999999999999999 6765542 25788999999999999854
No 46
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.85 E-value=5.1e-09 Score=97.24 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=65.7
Q ss_pred CeEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
..|.|.|+ |+|++++|++++++||.+||.+|++.+|||++.|||++ +|+.|.+ ..+|++++|++|.+|.
T Consensus 19 ~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~---~g~~L~d-------~~tL~~~~i~~~~~l~ 88 (172)
T 3u30_A 19 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLH 88 (172)
T ss_dssp CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TCBTGGGTCCTTCEEE
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCccccc-------cCCHhHcCCcccceee
Confidence 46899998 99999999999999999999999999999999999999 6765542 2578999999999999
Q ss_pred Eeccc
Q 008299 85 MMGVS 89 (570)
Q Consensus 85 LmGS~ 89 (570)
|+...
T Consensus 89 l~~~~ 93 (172)
T 3u30_A 89 LVLRL 93 (172)
T ss_dssp EEECC
T ss_pred eeecc
Confidence 98653
No 47
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.84 E-value=9.2e-09 Score=87.56 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=63.8
Q ss_pred eEEEEEEECCE--EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCC---CCCCCCCccccccccccccCCCc
Q 008299 7 MLKVSAIWRGK--KYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSK---LLSPFSDEHSSLSLQEVSIIEGK 81 (570)
Q Consensus 7 ~ItItVkwrGk--~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~---Lk~pfsD~~~~ltLse~gLk~G~ 81 (570)
.|+|.|++++. .+++.++++.||.+||++|+..+|||+++|+|++....|+. |. .| ..+|.++|+.+|.
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~---~D---~~tL~~y~i~~g~ 80 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLD---QE---DALLGSYPVDDGC 80 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECC---CS---SSBTTSSSCCTTC
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccC---CC---cCCHhHCCCCCCC
Confidence 59999999998 79999999999999999999999999999999983211221 11 12 3678899999999
Q ss_pred eEEEeccch
Q 008299 82 SIRMMGVSE 90 (570)
Q Consensus 82 KImLmGS~~ 90 (570)
.|.|+....
T Consensus 81 ~l~v~d~~P 89 (95)
T 1v6e_A 81 RIHVIDHSG 89 (95)
T ss_dssp EEEEBCCSC
T ss_pred EEEEEECCc
Confidence 999987543
No 48
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.84 E-value=6.6e-09 Score=90.68 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=63.0
Q ss_pred CeEEEEEEE----CCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCC
Q 008299 6 SMLKVSAIW----RGKKYVVEVNS-GSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEG 80 (570)
Q Consensus 6 ~~ItItVkw----rGk~~~I~L~~-daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G 80 (570)
..|.|.|++ +|+.++|++++ +.||.+||++|++.+|||++.|||++ +|+.|.+ ..+|+++++++|
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~---~Gk~L~D-------~~tL~~y~I~~g 95 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG---KAGFLKD-------NMSLAHYNVGAG 95 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC---SSSBCCT-------TSBTTTTTCSSS
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCEECCC-------CCcHHHCCCCCC
Confidence 368899998 68999999998 99999999999999999999999999 6765542 257889999999
Q ss_pred ceEEEec
Q 008299 81 KSIRMMG 87 (570)
Q Consensus 81 ~KImLmG 87 (570)
..|+|+-
T Consensus 96 ~~l~l~~ 102 (111)
T 1we6_A 96 EILTLSL 102 (111)
T ss_dssp CEEEEEC
T ss_pred CEEEEEE
Confidence 9999974
No 49
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.84 E-value=6.9e-09 Score=92.58 Aligned_cols=85 Identities=15% Similarity=0.256 Sum_probs=66.7
Q ss_pred CCCCeEEEEEEECCE--EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCC
Q 008299 3 DLGSMLKVSAIWRGK--KYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEG 80 (570)
Q Consensus 3 ~~~~~ItItVkwrGk--~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G 80 (570)
+|+..|+|.|++++. .+++.++++.||.+||++|+..+||||++|+|++....|+.+. ...+ +..+|.++||.+|
T Consensus 2 ~m~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~-~l~~--D~~tL~~y~i~~g 78 (122)
T 1t0y_A 2 SMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKG-ELTD--GAKSLKDLGVRDG 78 (122)
T ss_dssp -CCCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEE-ECCC--CSSBTTTTTCCSS
T ss_pred CCCCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCcccc-ccCC--CcCCHHHCCCCCC
Confidence 477789999999998 6899999999999999999999999999999998421122110 0001 2367889999999
Q ss_pred ceEEEeccch
Q 008299 81 KSIRMMGVSE 90 (570)
Q Consensus 81 ~KImLmGS~~ 90 (570)
.+|.|+.+..
T Consensus 79 ~~ihvvd~~p 88 (122)
T 1t0y_A 79 YRIHAVDVTG 88 (122)
T ss_dssp EEEEEEECTT
T ss_pred CEEEEEeCCC
Confidence 9999987554
No 50
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.83 E-value=8.5e-09 Score=90.09 Aligned_cols=73 Identities=16% Similarity=0.298 Sum_probs=63.8
Q ss_pred CeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
..+.|.|++ .|+++.|+++++.||.+||.+|++.+|||++.|+|++ +|+.|.+ ..+|+++++++|.+|.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~~gI~~gs~I~ 103 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLH 103 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE---TTEECCS-------SCBTTTTTCCTTCEEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE---CCEECCC-------CCcHHHcCCCCCCEEE
Confidence 368999998 5899999999999999999999999999999999999 6765542 2578899999999999
Q ss_pred Eecc
Q 008299 85 MMGV 88 (570)
Q Consensus 85 LmGS 88 (570)
|+..
T Consensus 104 l~~r 107 (111)
T 2ojr_A 104 LVLR 107 (111)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9753
No 51
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.82 E-value=7.7e-09 Score=94.41 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=63.7
Q ss_pred EEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceee-eccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 8 LKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFI-VPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 8 ItItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL-~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
+.|+|+ |.|++++|++++++||.+||.+|++.+|||++.|||+ +. +|+.|. | ..+|+++++++|..|.|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~--~g~~L~----d---~~tL~~y~i~~~~~l~l 73 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHP--SGVALQ----D---RVPLASQGLGPGSTVLL 73 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEET--TCCBCC----T---TSCGGGGTCCTTCEEEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcC--CCCCCC----C---CCCHHHcCCCCCCEEEE
Confidence 678888 8999999999999999999999999999999999999 72 265554 2 25789999999999999
Q ss_pred eccc
Q 008299 86 MGVS 89 (570)
Q Consensus 86 mGS~ 89 (570)
+.+.
T Consensus 74 ~~~~ 77 (159)
T 3rt3_B 74 VVDK 77 (159)
T ss_dssp EECC
T ss_pred EccC
Confidence 9883
No 52
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.81 E-value=4.9e-09 Score=91.20 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=64.1
Q ss_pred eEEEEEEECCE----EEEEEeCC---------CCCHHHHHHHHHHHh--CCCCCC-ceeeeccCCCCCCCCCCCCccccc
Q 008299 7 MLKVSAIWRGK----KYVVEVNS---------GSPLKELGHELQKLT--DVKADT-MRFIVPQNKGSKLLSPFSDEHSSL 70 (570)
Q Consensus 7 ~ItItVkwrGk----~~~I~L~~---------daTV~dLK~~Ie~lT--gVPpe~-QKLL~pk~KG~~Lk~pfsD~~~~l 70 (570)
.|.|+|+|.+. +|+|+|++ +.||.+||++|++.+ |||++. |||+| +|+.|.+ ..
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~---~Gk~L~D-------~~ 81 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIY---CGRKLKD-------DQ 81 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEE---TTEECCT-------TC
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEE---CCeECCC-------CC
Confidence 58899999876 89999665 699999999999999 999999 99999 7876652 25
Q ss_pred cccccccCCCceEEEeccch
Q 008299 71 SLQEVSIIEGKSIRMMGVSE 90 (570)
Q Consensus 71 tLse~gLk~G~KImLmGS~~ 90 (570)
+|+++++++|.+|.|+....
T Consensus 82 tL~~y~i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 82 TLDFYGIQPGSTVHVLRKSW 101 (107)
T ss_dssp BHHHHTCCTTCEEEEEESSC
T ss_pred cHHHcCCCCCCEEEEEeCCC
Confidence 78899999999999998754
No 53
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.80 E-value=6.3e-09 Score=91.08 Aligned_cols=73 Identities=10% Similarity=0.219 Sum_probs=61.4
Q ss_pred eEEEEEEEC-----CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCc
Q 008299 7 MLKVSAIWR-----GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (570)
Q Consensus 7 ~ItItVkwr-----Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~ 81 (570)
+.+|+|+-. +++++|+++++.||.+||+.|++.+||||+.||||| .|+.|++ ..+|++++|++|.
T Consensus 15 ~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~---~GKiL~D-------~~TL~~y~I~~gs 84 (100)
T 1wju_A 15 IATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVI---NKKQLQL-------GKTLEEQGVAHNV 84 (100)
T ss_dssp EEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEE---TTEECCT-------TSBHHHHTCCSSE
T ss_pred eEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEe---CCeECCC-------CCcHHHcCCCCCC
Confidence 456666544 457899999999999999999999999999999999 7887763 2678999999999
Q ss_pred eEEEeccc
Q 008299 82 SIRMMGVS 89 (570)
Q Consensus 82 KImLmGS~ 89 (570)
+||+|-..
T Consensus 85 ti~vl~lr 92 (100)
T 1wju_A 85 KAMVLELK 92 (100)
T ss_dssp EEEEECCC
T ss_pred EEEEEEEC
Confidence 99988544
No 54
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.78 E-value=8.5e-09 Score=90.26 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=63.4
Q ss_pred CCCeEEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCce
Q 008299 4 LGSMLKVSAIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKS 82 (570)
Q Consensus 4 ~~~~ItItVkwr-Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~K 82 (570)
...+|.|.|+-. |++++|++.+++||.+||+.|++.+|+|+++|+|++ .|+.|++ ..+|++++|.+|..
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~---~Gk~L~D-------~~TL~dygI~~gst 94 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKK---WYTIFKD-------HVSLGDYEIHDGMN 94 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCS-------SCBHHHHTCCTTEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE---CCEECCC-------CCCHHHcCCCCCCE
Confidence 335799999976 899999999999999999999999999999999998 5765552 26788999999999
Q ss_pred EEEe
Q 008299 83 IRMM 86 (570)
Q Consensus 83 ImLm 86 (570)
|-|.
T Consensus 95 lhL~ 98 (100)
T 1uh6_A 95 LELY 98 (100)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 55
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.24 E-value=8.7e-10 Score=88.62 Aligned_cols=70 Identities=23% Similarity=0.361 Sum_probs=60.0
Q ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 8 ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
+.|.|++ .|+++.++++++.||.+||++|++.+|||++.|+|++ +|+.|.+ ..+|+++|+++|..|.|+
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~---~gk~L~d-------~~tL~~~~i~~g~~i~l~ 70 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIF---AGKELPN-------HLTVQNCDLEQQSIVHIV 70 (76)
Confidence 3577887 6888999999999999999999999999999999999 6765542 257889999999999887
Q ss_pred c
Q 008299 87 G 87 (570)
Q Consensus 87 G 87 (570)
.
T Consensus 71 ~ 71 (76)
T 3b1l_X 71 Q 71 (76)
Confidence 4
No 56
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=98.75 E-value=1.5e-08 Score=87.83 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=62.8
Q ss_pred CCeEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceE
Q 008299 5 GSMLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 5 ~~~ItItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
+.+|.|.|+ ..|+++.|.+.+++||.+||+.|++.+|+||+.|+|++ .|..|++ ..+|.+++|.+|..|
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif---~Gk~LkD-------~~TL~dY~I~dgstL 88 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK---GGSVLKD-------HISLEDYEVHDQTNL 88 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TSBTGGGTCCTTCEE
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe---CCEEccC-------cCCHHHcCCCCCCEE
Confidence 358999999 58999999999999999999999999999999999998 5665553 368899999999998
Q ss_pred EE
Q 008299 84 RM 85 (570)
Q Consensus 84 mL 85 (570)
-|
T Consensus 89 hL 90 (93)
T 3plu_A 89 EL 90 (93)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 57
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=98.73 E-value=2.4e-08 Score=87.81 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=62.4
Q ss_pred CeEEEEEEE-----------CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccc
Q 008299 6 SMLKVSAIW-----------RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQE 74 (570)
Q Consensus 6 ~~ItItVkw-----------rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse 74 (570)
..|+|.|+. .|++++|+++++.||.+||++|++.+|||++.|+|++ +|..|.+ ..+|++
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~---~Gk~L~D-------~~tL~~ 93 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY---EGIFIKD-------SNSLAY 93 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE---TTEEECT-------TSBHHH
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE---CCEECCC-------CCCHHH
Confidence 368888887 4789999999999999999999999999999999999 6765542 257889
Q ss_pred cccCCCceEEEec
Q 008299 75 VSIIEGKSIRMMG 87 (570)
Q Consensus 75 ~gLk~G~KImLmG 87 (570)
+++.+|..|.|+-
T Consensus 94 y~i~~g~~i~lv~ 106 (115)
T 1we7_A 94 YNMASGAVIHLAL 106 (115)
T ss_dssp HTCCSSCEEEEEE
T ss_pred CCCCCCCEEEEEE
Confidence 9999999999873
No 58
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=98.71 E-value=3.2e-08 Score=85.20 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=60.8
Q ss_pred CCeEEEEEEECCE---EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCC---CCCCCCCCccccccccccccC
Q 008299 5 GSMLKVSAIWRGK---KYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGS---KLLSPFSDEHSSLSLQEVSII 78 (570)
Q Consensus 5 ~~~ItItVkwrGk---~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~---~Lk~pfsD~~~~ltLse~gLk 78 (570)
...|+|.|++.+- .+++.++++.||.+||++|+..|||||+.|||++.. .|+ .|.. +..+|+++++.
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~-~g~~~~~L~~------D~~tL~~Y~i~ 85 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK-GDTCVSTMDN------NDAQLGYYANS 85 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE-TTEEEEECCC------TTSBHHHHCCS
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec-CCcccceeCC------CCCCHhHCCcC
Confidence 3479999998654 789999999999999999999999999999999821 022 1211 23678999999
Q ss_pred CCceEEEe
Q 008299 79 EGKSIRMM 86 (570)
Q Consensus 79 ~G~KImLm 86 (570)
+|.+|.|+
T Consensus 86 ~gstihlv 93 (95)
T 2kjr_A 86 DGLRLHVV 93 (95)
T ss_dssp SSCEEEEE
T ss_pred CCCEEEEE
Confidence 99999986
No 59
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.70 E-value=5.7e-08 Score=84.11 Aligned_cols=80 Identities=11% Similarity=0.141 Sum_probs=63.2
Q ss_pred CCeEEEEEEECCE---EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCC--CCCCCCCCccccccccccccCC
Q 008299 5 GSMLKVSAIWRGK---KYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGS--KLLSPFSDEHSSLSLQEVSIIE 79 (570)
Q Consensus 5 ~~~ItItVkwrGk---~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~--~Lk~pfsD~~~~ltLse~gLk~ 79 (570)
+..++|.|++..- .+++.++++.||.+||++|+..+||||+.|+|++ .|+ +......+ +..+|++++|.+
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~---~g~~g~~~~~L~~--D~~tL~~Y~I~~ 86 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALEL---YDDSGSKVAVLSD--DSRPLGFFSPFD 86 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEE---ECSSSCBCCCSSG--GGSCHHHHCCCS
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEE---ecCCCcccceecC--CcCCHHHCCCCC
Confidence 3579999999554 6899999999999999999999999999999998 342 11000111 236789999999
Q ss_pred CceEEEeccc
Q 008299 80 GKSIRMMGVS 89 (570)
Q Consensus 80 G~KImLmGS~ 89 (570)
|.+|.|+.+.
T Consensus 87 g~~Ihlvd~~ 96 (97)
T 2kj6_A 87 GFRLHIIDLD 96 (97)
T ss_dssp CCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999998764
No 60
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=98.70 E-value=2.4e-08 Score=88.04 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=63.4
Q ss_pred eEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 7 MLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 7 ~ItItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
.+.|.|+ +.|++++|+++++.||.+||.+|++.+|||++.|+|++ +|+.|.+ ..+|+++++++|..|.|
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~ygI~~gstI~l 78 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW---AGKQLED-------GRTLSDYNIQRESTLHL 78 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TCBTTTTTCCSSCEEEE
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCEECCC-------CCcHHHCCCCCCCEEEE
Confidence 4666664 78999999999999999999999999999999999999 6765542 25788999999999999
Q ss_pred eccch
Q 008299 86 MGVSE 90 (570)
Q Consensus 86 mGS~~ 90 (570)
+....
T Consensus 79 ~~~~~ 83 (114)
T 2kdi_A 79 VLRLR 83 (114)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 87653
No 61
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.68 E-value=4e-08 Score=87.88 Aligned_cols=73 Identities=16% Similarity=0.303 Sum_probs=63.0
Q ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 8 ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
+.|.|++ .|+++++++++++||.+||++|++.+|||+++|+|++ +|..|.+ ..+|+++|+++|..|.|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~---~g~~L~d-------~~tL~~~~i~~~~~l~l~ 70 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TSBTGGGTCCTTCEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE---CCeECcC-------cccHHHhccCCCCeeEEE
Confidence 4688885 6899999999999999999999999999999999999 6765532 257889999999999999
Q ss_pred ccch
Q 008299 87 GVSE 90 (570)
Q Consensus 87 GS~~ 90 (570)
....
T Consensus 71 ~~~~ 74 (152)
T 3b08_A 71 LRLR 74 (152)
T ss_dssp ECCT
T ss_pred eecc
Confidence 8643
No 62
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.65 E-value=6.4e-08 Score=80.80 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=62.1
Q ss_pred EEEEEEECCEEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 8 LKVSAIWRGKKYVVE-VNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 8 ItItVkwrGk~~~I~-L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
|.|.|+|.+-++.|. |++++||.+||+.|++.+|||+++|+|++.. .++.+. ..+ +..+|+++||++|.+|.|.
T Consensus 1 m~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~-p~k~l~--l~~--~~~tL~~~gl~~g~~l~v~ 75 (86)
T 2kzr_A 1 WRVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGY-PPECLD--LSD--RDITLGDLPIQSGDMLIVE 75 (86)
T ss_dssp CCEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESS-CCCCCC--CCC--SSCBTTTSSCCTTCEEECC
T ss_pred CEEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCC-CCcccc--cCC--CCCCHHHcCCCCCCEEEEE
Confidence 458999988888898 9999999999999999999999999999731 122221 122 2367899999999999998
Q ss_pred ccch
Q 008299 87 GVSE 90 (570)
Q Consensus 87 GS~~ 90 (570)
....
T Consensus 76 ~~~~ 79 (86)
T 2kzr_A 76 EDQT 79 (86)
T ss_dssp CCSC
T ss_pred eCCC
Confidence 7743
No 63
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.63 E-value=6.4e-08 Score=81.71 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=62.7
Q ss_pred CCeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceE
Q 008299 5 GSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 5 ~~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
...|.|.|++ .|+.+.|+++++.||.+||.+|++.+ +++|+|++ +|+.|.+ + ..+|.++++++|..|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~---~Gk~L~D----~--~~tL~~y~i~~g~~i 72 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIY---QGRLLQD----P--ARTLSSLNITNNCVI 72 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEE---TTEECCC----S--SCBTTTTTCCTTEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEE---CCEEccC----C--cCCHHHcCCCCCCEE
Confidence 4579999986 68999999999999999999999998 99999999 7876653 1 156889999999999
Q ss_pred EEeccc
Q 008299 84 RMMGVS 89 (570)
Q Consensus 84 mLmGS~ 89 (570)
.|+...
T Consensus 73 ~l~~~~ 78 (95)
T 1wia_A 73 HCHRSP 78 (95)
T ss_dssp EEECCC
T ss_pred EEEECC
Confidence 999765
No 64
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.63 E-value=6.8e-08 Score=81.68 Aligned_cols=76 Identities=8% Similarity=0.076 Sum_probs=60.5
Q ss_pred eEEEEEEEC---CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCC----CCCCCCCCCCccccccccccccCC
Q 008299 7 MLKVSAIWR---GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNK----GSKLLSPFSDEHSSLSLQEVSIIE 79 (570)
Q Consensus 7 ~ItItVkwr---Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~K----G~~Lk~pfsD~~~~ltLse~gLk~ 79 (570)
.++|.|+|. .+.+++.++++.||.+||++|+..+||||+.|+|++.... |+++. +..+|+.+++.+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~-------d~~tL~~Y~i~~ 74 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMA-------NDKQLGYYQCRD 74 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCC-------TTSBGGGGTCCT
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcC-------CCCCHHHCCCCC
Confidence 688999985 3456889999999999999999999999999999973211 33222 236789999999
Q ss_pred CceEEEeccc
Q 008299 80 GKSIRMMGVS 89 (570)
Q Consensus 80 G~KImLmGS~ 89 (570)
|..|-|+-..
T Consensus 75 g~~ihlvd~~ 84 (86)
T 4b6w_A 75 EFVIHVVDLQ 84 (86)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999887543
No 65
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.62 E-value=5.5e-08 Score=93.59 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=63.4
Q ss_pred eEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 7 MLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 7 ~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
.+.|.|+. .|++++|++++++||.+||++|++.+|||++.|+|++ +|..|.+ ..+|+++++++|..|.|
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~---~Gk~L~D-------~~tL~dygI~~gstI~L 174 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHL 174 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEECCT-------TCBGGGGTCCTTCEEEE
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEE---CCEECCC-------CCCHHHCCCCCCCEEEE
Confidence 37889987 6899999999999999999999999999999999999 6776652 25788999999999999
Q ss_pred ecc
Q 008299 86 MGV 88 (570)
Q Consensus 86 mGS 88 (570)
+..
T Consensus 175 vlr 177 (189)
T 3q3f_A 175 VLR 177 (189)
T ss_dssp CCC
T ss_pred EEE
Confidence 854
No 66
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=98.59 E-value=1.1e-07 Score=89.39 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=61.5
Q ss_pred EEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEec
Q 008299 9 KVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (570)
Q Consensus 9 tItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmG 87 (570)
.|.|+. .|++++|+++++.||.+||.+|++.+|||++.|||++ +|+.|.+ ..+|+++++++|..|.|+.
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~~y~I~~gstI~Lvl 71 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLVL 71 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE---TTEECCT-------TSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE---CCccccC-------cCcHHHcCCCCCCEEEEEE
Confidence 466766 6899999999999999999999999999999999999 6876542 2578899999999999986
Q ss_pred cc
Q 008299 88 VS 89 (570)
Q Consensus 88 S~ 89 (570)
..
T Consensus 72 rl 73 (169)
T 3l0w_B 72 RL 73 (169)
T ss_dssp CC
T ss_pred Ee
Confidence 53
No 67
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.58 E-value=6.3e-09 Score=93.18 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=0.0
Q ss_pred EEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEec
Q 008299 9 KVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (570)
Q Consensus 9 tItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmG 87 (570)
.|.|++ .|++++|++++++||.+||++|++.+|||++.|+|++ +|..|.+ ..+|+++||.+|..|.|+.
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~~~~I~~gsti~l~~ 71 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLVL 71 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEE---CCEECCC-------CCchhhhccCCCCEEEEEE
Confidence 567776 6899999999999999999999999999999999999 6775542 2578899999999999985
Q ss_pred cc
Q 008299 88 VS 89 (570)
Q Consensus 88 S~ 89 (570)
..
T Consensus 72 rl 73 (128)
T 3u5e_m 72 RL 73 (128)
T ss_dssp --
T ss_pred Ec
Confidence 43
No 68
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.57 E-value=1.1e-07 Score=86.65 Aligned_cols=72 Identities=19% Similarity=0.209 Sum_probs=62.7
Q ss_pred eEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 7 MLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 7 ~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
.+.|.|+. .|++++|+++++.||.+||++|++.+|+|++.|+|++ +|..|.+ ..+|+++++++|..|.|
T Consensus 81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~G~~L~d-------~~tL~~y~i~~g~~l~l 150 (159)
T 3rt3_B 81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKPLED-------QLPLGEYGLKPLSTVFM 150 (159)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TSBGGGGTCCTTCEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE---CCeecCC-------CCCHHHcCCCCCCEEEE
Confidence 56778877 5899999999999999999999999999999999999 6776552 25789999999999999
Q ss_pred ecc
Q 008299 86 MGV 88 (570)
Q Consensus 86 mGS 88 (570)
+..
T Consensus 151 ~~r 153 (159)
T 3rt3_B 151 NLR 153 (159)
T ss_dssp EEC
T ss_pred EEe
Confidence 853
No 69
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=98.57 E-value=9.5e-08 Score=77.48 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=62.0
Q ss_pred eEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 7 MLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 7 ~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
.|.|.|+. .|+++.|.+.++.||.+||++|++.+|+|++.|+|++ .|..|.+ ..+|+++++.+|..|-|
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~---~G~~L~d-------~~tl~~~~i~~~~~i~l 72 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQRIAD-------NHTPKELGMEEEDVIEV 72 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TCCHHHHTCCTTEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE---CCEEeCC-------CCCHHHcCCCCCCEEEE
Confidence 57899984 7899999999999999999999999999999999999 6765552 25788899999999988
Q ss_pred ec
Q 008299 86 MG 87 (570)
Q Consensus 86 mG 87 (570)
+-
T Consensus 73 ~~ 74 (79)
T 2uyz_B 73 YQ 74 (79)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 70
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.56 E-value=6e-08 Score=101.76 Aligned_cols=75 Identities=12% Similarity=0.194 Sum_probs=65.4
Q ss_pred CeEEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHH---HhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCc
Q 008299 6 SMLKVSAIWR-GKKYVVEVNSGSPLKELGHELQK---LTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (570)
Q Consensus 6 ~~ItItVkwr-Gk~~~I~L~~daTV~dLK~~Ie~---lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~ 81 (570)
.+|.|+|++. |++|+|++.++.||.+||.+|++ .+|||+++||||| +|+.|++ ..+|.+++|+.|.
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy---~GK~L~D-------~~tL~dygI~~gs 75 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKILSD-------DVPIRDYRIDEKN 75 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES---SSSEECS-------SSBTTTTCCCTTS
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEE---CCeecCC-------cCCHHHcCCCCCC
Confidence 3688999996 99999999999999999999999 6889999999999 7887763 2578899999999
Q ss_pred eEEEeccch
Q 008299 82 SIRMMGVSE 90 (570)
Q Consensus 82 KImLmGS~~ 90 (570)
+|++|.+..
T Consensus 76 tIv~lv~k~ 84 (368)
T 1oqy_A 76 FVVVMVTKT 84 (368)
T ss_dssp CEEEEEECC
T ss_pred EEEEEEecC
Confidence 998887654
No 71
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.54 E-value=1.6e-07 Score=83.86 Aligned_cols=72 Identities=17% Similarity=0.312 Sum_probs=61.8
Q ss_pred eEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 7 MLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 7 ~ItItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
.+.|.|+ +.|+++.++++++.||.+||.+|++.+|+|++.|+|++ +|+.|.+ ..+|+++++++|..|.|
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~---~g~~L~d-------~~tL~~~~i~~~~~i~l 145 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHL 145 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TSBTGGGTCCTTCEEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE---CCEECCC-------CCCHHHcCCCCCCEEEE
Confidence 3677777 47899999999999999999999999999999999999 6765542 25688999999999999
Q ss_pred ecc
Q 008299 86 MGV 88 (570)
Q Consensus 86 mGS 88 (570)
+..
T Consensus 146 ~~r 148 (152)
T 3b08_A 146 VLR 148 (152)
T ss_dssp EEC
T ss_pred EEe
Confidence 753
No 72
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.54 E-value=5.7e-08 Score=85.53 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=62.8
Q ss_pred CCeEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------------CceeeeccCCCCCCCCCCCCccc
Q 008299 5 GSMLKVSA-IWRGKKYVVEVNSGSPLKELGHELQKLTDVKAD---------------TMRFIVPQNKGSKLLSPFSDEHS 68 (570)
Q Consensus 5 ~~~ItItV-kwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe---------------~QKLL~pk~KG~~Lk~pfsD~~~ 68 (570)
+..|.|+| +..|++++|++++++||.+||++|++.+++|++ .|+|++ .|+.|.+ +
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~---~Gk~L~d------D 75 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS---AGEKLTE------D 75 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEES---SSCEECC------S
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEe---CCcCccC------C
Confidence 34688999 579999999999999999999999999999984 569998 6876663 1
Q ss_pred cccccccccCCCceEEEec
Q 008299 69 SLSLQEVSIIEGKSIRMMG 87 (570)
Q Consensus 69 ~ltLse~gLk~G~KImLmG 87 (570)
..+|+++||++|..|.||=
T Consensus 76 ~~tL~dygI~~g~~l~lv~ 94 (105)
T 1v2y_A 76 RKKLRDYGIRNRDEVSFIK 94 (105)
T ss_dssp SSBHHHHTCCSSEEEEEEE
T ss_pred cCCHHHcCCCCCCEEEEEe
Confidence 2578999999999999874
No 73
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=1.1e-07 Score=85.56 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=63.7
Q ss_pred CeEEEEEE--ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceE
Q 008299 6 SMLKVSAI--WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 6 ~~ItItVk--wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
..++|+|+ -.|++++|++++++||++||+.|+..++||+++|.|+| .|+.|++ ..||.++|+++|..|
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy---~GKiLKD-------~eTL~~~gIk~g~TI 83 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRY---SGKILKN-------NETLVQHGVKPQEIV 83 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEE---TTEEECS-------SCCHHHHSCCSSCEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEE---CCeEcCC-------cchHHHcCCCCCCEE
Confidence 35777765 45889999999999999999999999999999999999 7888874 247889999999999
Q ss_pred EEeccc
Q 008299 84 RMMGVS 89 (570)
Q Consensus 84 mLmGS~ 89 (570)
-|+=.+
T Consensus 84 hLvi~s 89 (118)
T 2daf_A 84 QVEIFS 89 (118)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 987554
No 74
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=98.52 E-value=1.7e-07 Score=84.40 Aligned_cols=73 Identities=10% Similarity=0.055 Sum_probs=62.6
Q ss_pred eEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccC-------C
Q 008299 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSII-------E 79 (570)
Q Consensus 7 ~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk-------~ 79 (570)
.|-|.|.++++++.|++.++.||.+||+.|+..+|||++.|+|++ .|+.|.+ ..+|+++||. +
T Consensus 2 ~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~---~Gk~LeD-------~~TLsdy~I~~~~a~~q~ 71 (118)
T 2fnj_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYK---DDQLLDD-------GKTLGECGFTSQTARPQA 71 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TSBHHHHTCCTTTSBTTB
T ss_pred cEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEE---CCeECCC-------CCCHHHcCcccccccCCC
Confidence 577889999889999999999999999999999999999999998 5665542 2678999999 6
Q ss_pred CceEEEeccc
Q 008299 80 GKSIRMMGVS 89 (570)
Q Consensus 80 G~KImLmGS~ 89 (570)
+..|-|+-..
T Consensus 72 ~stL~L~lr~ 81 (118)
T 2fnj_B 72 PATVGLAFRA 81 (118)
T ss_dssp CEEEEEEEBS
T ss_pred CCEEEEEecC
Confidence 8888887653
No 75
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=98.51 E-value=1.1e-07 Score=82.54 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=57.4
Q ss_pred CeEEEEEEEC-CE--EEEEEeCCCCCHHHHHHHHHHH-hCCCC-CCceeeeccCCCCCCCCCCCCcccccccccc--ccC
Q 008299 6 SMLKVSAIWR-GK--KYVVEVNSGSPLKELGHELQKL-TDVKA-DTMRFIVPQNKGSKLLSPFSDEHSSLSLQEV--SII 78 (570)
Q Consensus 6 ~~ItItVkwr-Gk--~~~I~L~~daTV~dLK~~Ie~l-TgVPp-e~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~--gLk 78 (570)
..|.|.|++- |+ .++|+++++.||.+||++|++. .|+|| +.||||| +|+.|++ ..+|+++ ++.
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy---~Gk~L~D-------~~tL~~y~~~I~ 91 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVY---SGRLLPD-------HLQLKDILRKQD 91 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEE---TTEEECT-------TSBTHHHHTTTC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEE---CCEECCC-------CCCHHHHhcCCC
Confidence 3589999984 44 4678889999999999999986 56665 9999999 7877663 2578889 999
Q ss_pred CCceEEEe
Q 008299 79 EGKSIRMM 86 (570)
Q Consensus 79 ~G~KImLm 86 (570)
+|..|.|+
T Consensus 92 ~~~tihLv 99 (99)
T 2kdb_A 92 EYHMVHLV 99 (99)
T ss_dssp SEEEEEEC
T ss_pred CCCEEEeC
Confidence 99999875
No 76
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.49 E-value=2.4e-07 Score=95.21 Aligned_cols=73 Identities=16% Similarity=0.311 Sum_probs=64.2
Q ss_pred CCeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceE
Q 008299 5 GSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 5 ~~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
...+.|.|++ .|+++.|+++++.||.+||++|++.+|||+++|||++ +|+.|.+ ..+|++++|++|.+|
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~---~Gk~L~D-------~~TLsdygI~~gstL 300 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTL 300 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCT-------TSBTGGGTCCTTCEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEe---CCeecCC-------CCCHHHcCCCCCCEE
Confidence 3578999998 5899999999999999999999999999999999999 6765542 257889999999999
Q ss_pred EEec
Q 008299 84 RMMG 87 (570)
Q Consensus 84 mLmG 87 (570)
.|+.
T Consensus 301 ~Lvl 304 (307)
T 3ai5_A 301 HLVL 304 (307)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9874
No 77
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=98.45 E-value=2.8e-07 Score=78.61 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=62.9
Q ss_pred CeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
..|.|.|+. .|+++.|.+.++.||.+||..|++.+|||++.|+|+| .|..|.+ ..+|+++++..|..|-
T Consensus 20 ~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif---~Gk~L~d-------~~tl~dy~i~~g~~I~ 89 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQRIAD-------NHTPKELGMEEEDVIE 89 (97)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TCCHHHHTCCTTCEEE
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE---CCeEcCC-------CCCHHHCCCCCCCEEE
Confidence 468999985 6899999999999999999999999999999999999 6776552 2578889999999998
Q ss_pred Eec
Q 008299 85 MMG 87 (570)
Q Consensus 85 LmG 87 (570)
|+-
T Consensus 90 l~~ 92 (97)
T 1wyw_B 90 VYQ 92 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 78
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.45 E-value=2.9e-07 Score=85.38 Aligned_cols=70 Identities=17% Similarity=0.347 Sum_probs=60.8
Q ss_pred EEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 8 LKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 8 ItItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
+.|.|+ +.|+++.+.+.++.||.+||.+|+..+|||++.|+|++ +|..|.+ ..+|+++++++|..|.|+
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~L~D-------~~tL~~y~i~~g~tl~l~ 166 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLV 166 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEECCT-------TSBSGGGTCCTTCEEEEC
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEE---CCccCCC-------CCcHHHhCCCCCCEEEEE
Confidence 455565 78999999999999999999999999999999999999 6775542 257899999999999997
Q ss_pred c
Q 008299 87 G 87 (570)
Q Consensus 87 G 87 (570)
.
T Consensus 167 ~ 167 (172)
T 3u30_A 167 L 167 (172)
T ss_dssp C
T ss_pred E
Confidence 5
No 79
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=98.43 E-value=4.5e-07 Score=81.67 Aligned_cols=71 Identities=11% Similarity=0.071 Sum_probs=61.7
Q ss_pred eEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCC-------
Q 008299 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIE------- 79 (570)
Q Consensus 7 ~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~------- 79 (570)
.+-|.|++++.++.+++.++.||.+||+.|+..+||||+.|+|++ .|+.|.+ ..||+++||.+
T Consensus 2 ~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~---~Gk~LeD-------~kTL~dy~I~~~ta~~q~ 71 (118)
T 4ajy_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYK---DDQLLDD-------GKTLGECGFTSQTARPQA 71 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TSBTTTTTCCGGGSBTTB
T ss_pred ceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEe---CCeECCC-------cCCHHHcCCCcCcccCCC
Confidence 466899999999999999999999999999999999999999998 5665542 36788999998
Q ss_pred CceEEEec
Q 008299 80 GKSIRMMG 87 (570)
Q Consensus 80 G~KImLmG 87 (570)
+..|-|+=
T Consensus 72 ~atl~Lvl 79 (118)
T 4ajy_B 72 PATVGLAF 79 (118)
T ss_dssp CEEEEEEE
T ss_pred CCEEEEEE
Confidence 88888863
No 80
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=98.43 E-value=2.7e-08 Score=92.63 Aligned_cols=71 Identities=18% Similarity=0.328 Sum_probs=0.0
Q ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 8 ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
|.|.|++ .|++++|++++++||.+||++|++.+|||++.|+|++ +|..|.+ ..+|++++|.+|..|.|+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~dygI~~gstL~Lv 70 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEEccc-------cCcHHHcCCCCCCEEEEE
Confidence 3577777 5889999999999999999999999999999999999 6775542 257889999999999987
Q ss_pred cc
Q 008299 87 GV 88 (570)
Q Consensus 87 GS 88 (570)
..
T Consensus 71 lr 72 (152)
T 3u5c_f 71 LR 72 (152)
T ss_dssp --
T ss_pred ee
Confidence 43
No 81
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.41 E-value=6.9e-07 Score=76.10 Aligned_cols=81 Identities=11% Similarity=0.107 Sum_probs=62.6
Q ss_pred CCeEEEEEEE----CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccC-CCCCCCCCCCCccccccccccccCC
Q 008299 5 GSMLKVSAIW----RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQN-KGSKLLSPFSDEHSSLSLQEVSIIE 79 (570)
Q Consensus 5 ~~~ItItVkw----rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~-KG~~Lk~pfsD~~~~ltLse~gLk~ 79 (570)
+..|+|+|++ .|+.+++.|+.+.||.+||..|+.+||+|+..|||.+-.. .+. ...++.++ ..+|..+++.+
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~-~~~~L~~d--~~~L~~y~i~~ 83 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPG-REIELEND--LQPLQFYSVEN 83 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCS-CEEECCCS--SSBSGGGTCCT
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCc-eeeccCCC--cccHhhcCCCC
Confidence 3579999986 4778899999999999999999999999999999997310 111 11123333 35788999999
Q ss_pred CceEEEecc
Q 008299 80 GKSIRMMGV 88 (570)
Q Consensus 80 G~KImLmGS 88 (570)
|..|.+.-+
T Consensus 84 G~~I~V~d~ 92 (97)
T 1wjn_A 84 GDCLLVRWS 92 (97)
T ss_dssp TCEEEEECC
T ss_pred CCEEEEEec
Confidence 999988754
No 82
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=1.3e-06 Score=73.88 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=56.9
Q ss_pred eEEEEEEECC-EE--EEE-EeCCCCCHHHHHHHHHHH-hCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCc
Q 008299 7 MLKVSAIWRG-KK--YVV-EVNSGSPLKELGHELQKL-TDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (570)
Q Consensus 7 ~ItItVkwrG-k~--~~I-~L~~daTV~dLK~~Ie~l-TgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~ 81 (570)
+|.|.|+..+ ++ +.| ++++++||.+||++|++. .||||++|+|++.. +|+.|++ ..+|+++++.+|.
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~-~Gk~L~D-------~~tL~~y~i~~~s 81 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDP-KGKSLKD-------EDVLQKLPVGTTA 81 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESST-TSCCCCT-------TCBTTTSSCCSEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecC-CCcCcCC-------CCCHHHcCCCCCC
Confidence 4889998763 44 368 999999999999999995 89999999998732 5766642 2578899999999
Q ss_pred eEEE
Q 008299 82 SIRM 85 (570)
Q Consensus 82 KImL 85 (570)
+|.+
T Consensus 82 tl~~ 85 (88)
T 2dzj_A 82 TLYF 85 (88)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8765
No 83
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=98.27 E-value=1.2e-06 Score=79.33 Aligned_cols=68 Identities=16% Similarity=0.279 Sum_probs=56.9
Q ss_pred CeEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHH------HhCCC--CCCceeeeccCCCCCCCCCCCCccccccccccc
Q 008299 6 SMLKVSAI-WRGKKYVVEVNSGSPLKELGHELQK------LTDVK--ADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVS 76 (570)
Q Consensus 6 ~~ItItVk-wrGk~~~I~L~~daTV~dLK~~Ie~------lTgVP--pe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~g 76 (570)
+.|.|+|+ ..|++++|++++++||.+||+.|++ ..|+| ++.||||| .|+.|.+ ..+|++++
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy---~GK~LeD-------~~TL~~y~ 85 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRFLHG-------NVTLGALK 85 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEES---SSSEEES-------SCBTGGGC
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEE---CCcCCCC-------CCcHHHcC
Confidence 46888886 4689999999999999999999999 77884 89999999 6887663 25788999
Q ss_pred cCCCceE
Q 008299 77 IIEGKSI 83 (570)
Q Consensus 77 Lk~G~KI 83 (570)
|..|..+
T Consensus 86 I~~~~~~ 92 (125)
T 2gow_A 86 LPFGKTT 92 (125)
T ss_dssp CCTTSEE
T ss_pred CCCCCce
Confidence 9987754
No 84
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.26 E-value=2.2e-06 Score=76.67 Aligned_cols=68 Identities=16% Similarity=0.293 Sum_probs=56.8
Q ss_pred CCeEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHH------HhCC--CCCCceeeeccCCCCCCCCCCCCcccccccccc
Q 008299 5 GSMLKVSAI-WRGKKYVVEVNSGSPLKELGHELQK------LTDV--KADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEV 75 (570)
Q Consensus 5 ~~~ItItVk-wrGk~~~I~L~~daTV~dLK~~Ie~------lTgV--Ppe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~ 75 (570)
.+.|.|+|+ ..|++++|++.++.||.+||+.|++ ..++ |++.|+||| .|+.|.+ ..+|+++
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy---~GK~LeD-------~~TL~~y 83 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRFLHG-------NVTLGAL 83 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEE---TTEEECS-------SCBTTTT
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEE---CCcCCCC-------CCcHHHc
Confidence 357899998 4899999999999999999999999 5675 699999999 6876663 2678889
Q ss_pred ccCCCce
Q 008299 76 SIIEGKS 82 (570)
Q Consensus 76 gLk~G~K 82 (570)
+|..+..
T Consensus 84 ~I~~~~~ 90 (116)
T 1wgh_A 84 KLPFGKT 90 (116)
T ss_dssp TCCSSCE
T ss_pred CCCCCCc
Confidence 9987754
No 85
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=98.24 E-value=3.4e-06 Score=74.47 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=51.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCcccccccccccc-CCCceEEEec
Q 008299 17 KKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSI-IEGKSIRMMG 87 (570)
Q Consensus 17 k~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gL-k~G~KImLmG 87 (570)
.+++|++.+++||.+||++|++..|+||+.|||++ .|. +.. +..+|.++|+ .+|..+.|+=
T Consensus 37 ~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~---ggk-ll~------D~~TL~~ygI~~~G~t~hL~l 98 (105)
T 4dbg_A 37 VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVI---GQR-LAR------DQETLHSHGVRQNGDSAYLYL 98 (105)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTE-EEC------TTCBTGGGTCCSTTCEEEEEE
T ss_pred ceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEec---cCe-Ecc------CcCcHHHcCCCCCCCEEEEEE
Confidence 78889999999999999999999999999999888 344 332 2367889999 4999998863
No 86
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.19 E-value=4.4e-06 Score=72.73 Aligned_cols=77 Identities=10% Similarity=0.115 Sum_probs=59.0
Q ss_pred eEEEEEEECCEEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCceeeeccCCCC-----------CCCCCCCCccccccccc
Q 008299 7 MLKVSAIWRGKKYVVEVN-SGSPLKELGHELQKLTDVKADTMRFIVPQNKGS-----------KLLSPFSDEHSSLSLQE 74 (570)
Q Consensus 7 ~ItItVkwrGk~~~I~L~-~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~-----------~Lk~pfsD~~~~ltLse 74 (570)
.|.|.|+...-++.|+++ +++||.+||++|++.++||++.|+|++. |+ .+.+ ..+ +..+|++
T Consensus 7 ~M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~---~~~~~~k~~~~~~~l~~-~l~--d~~tL~~ 80 (107)
T 1wf9_A 7 GTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN---RNLLLAKSPSDFLAFTD-MAD--PNLRISS 80 (107)
T ss_dssp CEEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS---GGGGTCCSHHHHTTCCS-SCC--TTCBGGG
T ss_pred eEEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEEC---CccccccCccccccccc-cCC--CCCCHHH
Confidence 467888876556689999 9999999999999999999999999762 32 1100 011 2367899
Q ss_pred cccCCCceEEEeccc
Q 008299 75 VSIIEGKSIRMMGVS 89 (570)
Q Consensus 75 ~gLk~G~KImLmGS~ 89 (570)
+||+.|..|.|.=..
T Consensus 81 ~gi~~G~~L~l~~~~ 95 (107)
T 1wf9_A 81 LNLAHGSMVYLAYEG 95 (107)
T ss_dssp TCCCTTCEEECCCSS
T ss_pred CCCCCCCEEEEEeCC
Confidence 999999999887543
No 87
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=97.77 E-value=3.5e-05 Score=70.01 Aligned_cols=66 Identities=11% Similarity=0.167 Sum_probs=53.1
Q ss_pred CeEEEEE-EECCEEE-EEEeCCCCCHHHHHHHH-----HHHhCCCC--CCceeeeccCCCCCCCCCCCCccccccccccc
Q 008299 6 SMLKVSA-IWRGKKY-VVEVNSGSPLKELGHEL-----QKLTDVKA--DTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVS 76 (570)
Q Consensus 6 ~~ItItV-kwrGk~~-~I~L~~daTV~dLK~~I-----e~lTgVPp--e~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~g 76 (570)
+.+.|+| ...|+.+ .+++++++||.+||+.| ++..|+|+ +.||||| .|+.|.+ ..+|++++
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy---~GK~LeD-------~~TLsdy~ 84 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS---AGKVLEN-------SKTVKDYR 84 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEE---TTEECCT-------TSBGGGGS
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEE---CCeECcC-------CCcHHHcC
Confidence 4677887 4567677 69999999999999999 45668987 8999999 6876663 26788999
Q ss_pred cCCCc
Q 008299 77 IIEGK 81 (570)
Q Consensus 77 Lk~G~ 81 (570)
|..|.
T Consensus 85 I~~~~ 89 (126)
T 1se9_A 85 SPVSN 89 (126)
T ss_dssp CCTTS
T ss_pred CCcCC
Confidence 99884
No 88
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.40 E-value=0.00016 Score=60.27 Aligned_cols=76 Identities=12% Similarity=0.108 Sum_probs=58.3
Q ss_pred CCCeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeecc-CCCCCCCCCCCCccccccccccccCCCce
Q 008299 4 LGSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQ-NKGSKLLSPFSDEHSSLSLQEVSIIEGKS 82 (570)
Q Consensus 4 ~~~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk-~KG~~Lk~pfsD~~~~ltLse~gLk~G~K 82 (570)
|...+.|.|....-++.|++++++|+.+|+++|++.|+|+++.|.|.+-. .++.+.. + ...+|+++||+.|-.
T Consensus 1 ~~~~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~---~---~~~~l~~lgl~hGd~ 74 (80)
T 2pjh_A 1 MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITA---S---SSKSLHLLKIKHGDL 74 (80)
T ss_dssp -CCCCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSS---C---CCCTTTTTCCCTTCC
T ss_pred CCCcEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccC---C---CCCCHHHcCCCCCCE
Confidence 34557799999988999999999999999999999999999999887521 1222111 1 235788899999988
Q ss_pred EEE
Q 008299 83 IRM 85 (570)
Q Consensus 83 ImL 85 (570)
|.+
T Consensus 75 l~l 77 (80)
T 2pjh_A 75 LFL 77 (80)
T ss_dssp EEC
T ss_pred EEE
Confidence 865
No 89
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=97.39 E-value=2.4e-05 Score=75.51 Aligned_cols=49 Identities=14% Similarity=0.269 Sum_probs=0.0
Q ss_pred EEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCC
Q 008299 9 KVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLL 60 (570)
Q Consensus 9 tItVk-wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk 60 (570)
.|.|+ ..|++++|++.++.||.+||..|++.+|||++.|+|++ .|..|.
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf---~GK~Le 51 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVN---NGFIAP 51 (189)
T ss_dssp -----------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEe---cCeECC
Confidence 35555 46899999999999999999999999999999999999 676554
No 90
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.28 E-value=0.00048 Score=59.79 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=49.5
Q ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCC-CCCCCCccccccccccccCCCceEEEeccch
Q 008299 15 RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKL-LSPFSDEHSSLSLQEVSIIEGKSIRMMGVSE 90 (570)
Q Consensus 15 rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~L-k~pfsD~~~~ltLse~gLk~G~KImLmGS~~ 90 (570)
.++.|.|.+.++.||..||++|++.|||||+.|.||+ .|+.+ ..|. ...... ..-.+-.+|||+....
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~---eg~~l~l~p~---~~a~~~--p~Tt~~~Pl~L~s~~~ 90 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIY---EGRRLVLEPG---RLAQHF--PKTTEENPIFVVSLER 90 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEEECCCTT---CBGGGS--CCCBTTBCEEEEECCC
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHh---CCCccccCCC---CccccC--CCCCCCCCEEEEecCC
Confidence 6888999999999999999999999999999999999 56322 2221 111111 1234567888887643
No 91
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=97.00 E-value=0.0027 Score=52.38 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=60.7
Q ss_pred CCeEEEEEEE-CCE-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCce
Q 008299 5 GSMLKVSAIW-RGK-KYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKS 82 (570)
Q Consensus 5 ~~~ItItVkw-rGk-~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~K 82 (570)
+..|+|.|+- .|+ .+.|.+..+.++..|+.++++..|++++.|+|+| .|..+.. ..|..++++..|-.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l~~-------~~Tp~~l~medgD~ 74 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF---DGTKLSG-------KELPADLGLESGDL 74 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE---TTEECCS-------CCCHHHHTCCTTCE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE---CCEEcCC-------CCCHHHcCCCCCCE
Confidence 3468899986 664 7899999999999999999999999999999999 6765542 14567789999998
Q ss_pred EEEec
Q 008299 83 IRMMG 87 (570)
Q Consensus 83 ImLmG 87 (570)
|-++|
T Consensus 75 Idv~~ 79 (79)
T 3a4r_A 75 IEVWG 79 (79)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 88776
No 92
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=96.91 E-value=0.0019 Score=55.27 Aligned_cols=72 Identities=11% Similarity=0.227 Sum_probs=59.1
Q ss_pred CCeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceE
Q 008299 5 GSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 5 ~~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
+..|+|.|+- .|+.+.|.+.++.++..|+.++++..||+++.|+|+| .|..+.. ..|+.++++..|-.|
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F---dG~~l~~-------~~Tp~dl~medgD~I 74 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPINE-------TDTPAQLEMEDEDTI 74 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TCCTTTTTCCTTCEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE---CCEEcCC-------CCCHHHcCCCCCCEE
Confidence 3468999984 7888999999999999999999999999999999999 6765542 145567788888887
Q ss_pred EEe
Q 008299 84 RMM 86 (570)
Q Consensus 84 mLm 86 (570)
-++
T Consensus 75 dv~ 77 (94)
T 2io1_B 75 DVF 77 (94)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 93
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=96.83 E-value=0.0035 Score=50.62 Aligned_cols=69 Identities=12% Similarity=0.238 Sum_probs=56.8
Q ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 8 ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
|+|.|+- .|+.+.|.+.++.++..|+.+.++..|+++..|+|++ .|..+.. ..|..++++..|-.|-++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l~~-------~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPINE-------TDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE---TTEECCT-------TCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE---CCEEcCC-------CCCHHHcCCCCCCEEEEE
Confidence 6788884 6888999999999999999999999999999999999 6765542 134566788888877654
No 94
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=96.66 E-value=0.0052 Score=52.38 Aligned_cols=72 Identities=11% Similarity=0.227 Sum_probs=59.0
Q ss_pred CCeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceE
Q 008299 5 GSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 5 ~~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
+..|+|.|+- .|+.+.|.+.++.++..|+.++++..|+++..|+|+| .|..+.. ..|..++++..|-.|
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F---dG~~l~~-------~~Tp~dl~medgD~I 72 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPINE-------TDTPAQLEMEDEDTI 72 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE---TTEECCT-------TCCTTTTTCCTTEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE---CCEEcCC-------CCCHHHcCCCCCCEE
Confidence 3578999984 7888999999999999999999999999999999999 6765542 134566788888887
Q ss_pred EEe
Q 008299 84 RMM 86 (570)
Q Consensus 84 mLm 86 (570)
-++
T Consensus 73 dv~ 75 (91)
T 2io0_B 73 DVF 75 (91)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=96.43 E-value=0.0094 Score=52.70 Aligned_cols=73 Identities=18% Similarity=0.319 Sum_probs=60.1
Q ss_pred CeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
..|+|.|+- .|+.+.|.+..+.++..|+.++++..|++++.|+|+| .|..+.. ..|..++++..|-.|-
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF---dG~~L~~-------~~Tp~dl~mEDgD~Id 94 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF---DGTPIDE-------TKTPEELGMEDDDVID 94 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES---SSCBCCS-------SSHHHHHHCSSEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE---CCEEcCC-------CCCHHHcCCCCCCEEE
Confidence 469999986 6778899999999999999999999999999999999 6765542 1456677888888887
Q ss_pred Eecc
Q 008299 85 MMGV 88 (570)
Q Consensus 85 LmGS 88 (570)
++=.
T Consensus 95 v~~~ 98 (110)
T 2k8h_A 95 AMVE 98 (110)
T ss_dssp EECC
T ss_pred EEEc
Confidence 6543
No 96
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.41 E-value=0.014 Score=50.98 Aligned_cols=71 Identities=11% Similarity=0.228 Sum_probs=58.6
Q ss_pred CeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
..|+|.|+- .|+.+.|.+..+.++..|+.++++..|+++..|+|+| .|..|.. ..|..++++..|-.|-
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~F---dG~~l~~-------~~Tp~dl~medgD~Id 92 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPINE-------TDTPAQLEMEDEDTID 92 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEES---SSSBCCT-------TSCTTTTTCCTTEEEE
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEE---CCEEcCC-------CCCHHHcCCCCCCEEE
Confidence 468899985 6778899999999999999999999999999999999 6765542 1345667888888776
Q ss_pred Ee
Q 008299 85 MM 86 (570)
Q Consensus 85 Lm 86 (570)
++
T Consensus 93 v~ 94 (104)
T 1wz0_A 93 VF 94 (104)
T ss_dssp EC
T ss_pred EE
Confidence 64
No 97
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=96.34 E-value=0.0093 Score=52.45 Aligned_cols=71 Identities=13% Similarity=0.299 Sum_probs=59.0
Q ss_pred CeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 6 ~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
..|+|.|+-.|+.+.|.+..+.++..|+.++++..|+++..|+|+| .|..+.. ..|..++++..|-.|-+
T Consensus 30 ~~I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F---dG~rl~~-------~~Tp~dl~medgD~Idv 99 (106)
T 2eke_C 30 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRIQA-------DQTPEDLDMEDNDIIEA 99 (106)
T ss_dssp SEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TCCTTTTTCCTTEEEEE
T ss_pred CeEEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE---CCeEcCC-------CCCHHHcCCCCCCEEEE
Confidence 4688998877888999999999999999999999999999999999 6765542 13456678888887766
Q ss_pred e
Q 008299 86 M 86 (570)
Q Consensus 86 m 86 (570)
+
T Consensus 100 ~ 100 (106)
T 2eke_C 100 H 100 (106)
T ss_dssp E
T ss_pred E
Confidence 5
No 98
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=96.20 E-value=0.014 Score=49.62 Aligned_cols=71 Identities=11% Similarity=0.228 Sum_probs=58.1
Q ss_pred CeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
..|+|.|+- .|+.+.|.+..+.++..|+.++++..|++++.|+|+| .|..+.. ..|..++++..|-.|-
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l~~-------~~Tp~dl~medgD~Id 85 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPINE-------TDTPAQLEMEDEDTID 85 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TCCTTTTTCCTTEEEE
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE---CCEEcCC-------CCCHHHcCCCCCCEEE
Confidence 468888885 6778889999999999999999999999999999999 6765542 1345667888888776
Q ss_pred Ee
Q 008299 85 MM 86 (570)
Q Consensus 85 Lm 86 (570)
++
T Consensus 86 v~ 87 (93)
T 2d07_B 86 VF 87 (93)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 99
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=93.55 E-value=0.16 Score=49.30 Aligned_cols=72 Identities=13% Similarity=0.291 Sum_probs=58.8
Q ss_pred CCeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 5 ~~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
+.-|+|.|+..|+...|.+-.++++..|+.+.++..|+++..++|++ .|..+.. ..|..++++..|-.|-
T Consensus 27 ~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~F---dG~rI~~-------~~TP~dL~MEdgD~Id 96 (200)
T 3pge_A 27 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRIQA-------DQTPEDLDMEDNDIIE 96 (200)
T ss_dssp CCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEE---TTEECCT-------TCCTTTTTCCTTEEEE
T ss_pred CCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEE---CCEEcCC-------CCCHHHcCCCCCCEEE
Confidence 34699999999999999999999999999999999999999999999 6764442 1344566777777766
Q ss_pred Ee
Q 008299 85 MM 86 (570)
Q Consensus 85 Lm 86 (570)
++
T Consensus 97 v~ 98 (200)
T 3pge_A 97 AH 98 (200)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 100
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=93.04 E-value=0.31 Score=43.54 Aligned_cols=71 Identities=18% Similarity=0.331 Sum_probs=57.6
Q ss_pred CeEEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVkwr-Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
..|+|.|+-. |+...|.+-.+.++..|..+.++..|+++..++|+| .|..+.. ..|..++++..|-.|-
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF---DG~rI~~-------~~TP~dL~MEDgD~Id 108 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQRIAD-------NHTPKELGMEEEDVIE 108 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE---TTEECCT-------TCCTTTTTCCTTCEEE
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEE---CCeECCC-------CCCHHHcCCCCCCEEE
Confidence 4688888874 677789999999999999999999999999999999 6765442 1344567888888886
Q ss_pred Ee
Q 008299 85 MM 86 (570)
Q Consensus 85 Lm 86 (570)
++
T Consensus 109 V~ 110 (115)
T 3kyd_D 109 VY 110 (115)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 101
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=92.16 E-value=0.27 Score=48.02 Aligned_cols=72 Identities=11% Similarity=0.262 Sum_probs=59.8
Q ss_pred CCeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 5 ~~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
+.-|+|.|+-.|+.+.|.|-.++++..|+.+.++..||++..++|+| .|..+.. ..|..++++..|-.|=
T Consensus 55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF---DGqRI~~-------ddTPeDLdMEDGDtID 124 (207)
T 3tix_A 55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY---DGIEIQA-------DQTPEDLDMEDNDIIE 124 (207)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE---TTEECCS-------SCCTTTTTCCTTEEEE
T ss_pred CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE---CCeecCC-------CCCHHHcCCCCCCEEE
Confidence 34699999999999999999999999999999999999999999999 6764442 1344567888888876
Q ss_pred Ee
Q 008299 85 MM 86 (570)
Q Consensus 85 Lm 86 (570)
++
T Consensus 125 V~ 126 (207)
T 3tix_A 125 AH 126 (207)
T ss_dssp EC
T ss_pred EE
Confidence 65
No 102
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=90.30 E-value=0.37 Score=40.56 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=54.1
Q ss_pred CeEEEEEE---ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCce-e-eeccCCCCCCCCCCCCccccccccccccCCC
Q 008299 6 SMLKVSAI---WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMR-F-IVPQNKGSKLLSPFSDEHSSLSLQEVSIIEG 80 (570)
Q Consensus 6 ~~ItItVk---wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QK-L-L~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G 80 (570)
+-|+|||- |++++|++.+|..-||+.|...|.+..+++...-+ - |--.+|+..|.. ...|++.++..|
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~-------~~~L~d~~ItnG 75 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSG-------ECKLSDCGITNG 75 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEET-------TSBTGGGTCCTT
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcC-------CCEEeeCCcCCC
Confidence 35778887 59999999999999999999999999999864333 1 111146655442 135778899999
Q ss_pred ceEEE
Q 008299 81 KSIRM 85 (570)
Q Consensus 81 ~KImL 85 (570)
-.|-+
T Consensus 76 D~Lei 80 (81)
T 2bps_A 76 DRLEI 80 (81)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88764
No 103
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=88.72 E-value=1.7 Score=35.76 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=53.9
Q ss_pred CCeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeee--ccCCCCCCCCCCCCccccccccccccCCCc
Q 008299 5 GSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV--PQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (570)
Q Consensus 5 ~~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~--pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~ 81 (570)
....+|.|.+ +|+...-.++.+.||.+|..-|.. .+.++...+|+. |+ | .+.......+|.++||.++.
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPr-k------~l~~~d~~~TL~e~gL~p~a 76 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPR-R------DVTQLDPNKSLLEVKLFPQE 76 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSC-C------BGGGSCTTSBTTTTTCCSEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCC-C------CCcCCCCCCCHHHCCCCCCC
Confidence 3467788887 566677789999999999999998 677888889883 32 1 12111123689999999888
Q ss_pred eEEE
Q 008299 82 SIRM 85 (570)
Q Consensus 82 KImL 85 (570)
.|++
T Consensus 77 ~L~v 80 (84)
T 3qx1_A 77 TLFL 80 (84)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
No 104
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=86.61 E-value=3.3 Score=35.68 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=57.2
Q ss_pred CCeEEEEEEE-CC-EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCce
Q 008299 5 GSMLKVSAIW-RG-KKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKS 82 (570)
Q Consensus 5 ~~~ItItVkw-rG-k~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~K 82 (570)
+..|+|.|+- .| +...|.+-.+.++.-|..+.++..|+++..-+|+| .|..+. + + .|-.++++..|-.
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F---DG~rI~-~--~----~TP~dLdMEDgD~ 92 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF---DGTKLS-G--R----ELPADLGMESGDL 92 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE---TTEECC-S--C----SCHHHHTCCTTEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE---CCEEcC-C--C----CCHHHcCCCCCCE
Confidence 3578888887 44 36789999999999999999999999999999999 676444 2 1 2345678888887
Q ss_pred EEEec
Q 008299 83 IRMMG 87 (570)
Q Consensus 83 ImLmG 87 (570)
|-++|
T Consensus 93 IDv~~ 97 (97)
T 2jxx_A 93 IEVWG 97 (97)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77665
No 105
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=83.70 E-value=2.3 Score=36.42 Aligned_cols=43 Identities=21% Similarity=0.449 Sum_probs=38.6
Q ss_pred CCCeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 008299 4 LGSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADT 46 (570)
Q Consensus 4 ~~~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~ 46 (570)
.+..++|++.|+|..+.+.++++.|..+|.++|.+.++++...
T Consensus 3 ~~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~ 45 (89)
T 1vd2_A 3 LGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQ 45 (89)
T ss_dssp CSSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSC
T ss_pred CCCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 4567999999999999999999999999999999999987433
No 106
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=82.72 E-value=2.3 Score=36.04 Aligned_cols=46 Identities=9% Similarity=0.237 Sum_probs=41.7
Q ss_pred CeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeec
Q 008299 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (570)
Q Consensus 6 ~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~p 52 (570)
..++|+|+|. -++.|.++.+.+..+|.+.|.+.+.++++.-+|-|.
T Consensus 4 ~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk 49 (83)
T 1oey_A 4 MAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR 49 (83)
T ss_dssp SCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred CcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEee
Confidence 3589999999 677789999999999999999999999999999884
No 107
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=82.61 E-value=7.2 Score=33.82 Aligned_cols=76 Identities=12% Similarity=0.209 Sum_probs=55.4
Q ss_pred CeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
...+|.|.+ +|+...-.++.+.||.++..-|....+.+...-.|+-+- +.+ .|..+....||.++||.+...|.
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~f--Prk---~l~~~d~~~TL~elgL~psa~L~ 86 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMF--PRR---EFTREDYKRRLLDLELAPSASVV 86 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSS--SCC---BCCTTTTTSBTGGGTCSSEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCC--CCc---CCcccccCCCHHHCCCCCceEEE
Confidence 357888886 677788899999999999999999988877777777420 111 22211124789999999887666
Q ss_pred Ee
Q 008299 85 MM 86 (570)
Q Consensus 85 Lm 86 (570)
+.
T Consensus 87 v~ 88 (109)
T 2dzk_A 87 LL 88 (109)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 108
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=82.59 E-value=3.4 Score=35.26 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=52.5
Q ss_pred CeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 6 ~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
..+.|.|.|.+--+.|.||++-+..+|+..|.....+ +..+|++. |+-..-.+..++ ..| +..|....|||+
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~y--kde~~g~~i~sD---~dl-~~aiqrn~KL~l 82 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTK--LFDGSGEEIKTD---SQV-SNIIQAKLKISV 82 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEEC--CSSSCCSCCCSH---HHH-HHHHHTTCCEEE
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEe--cCCCCCCcccCH---HHH-HHHHHhcCeeEE
Confidence 4689999999999999999999999999999999999 57777763 221111111111 112 234667888888
Q ss_pred ec
Q 008299 86 MG 87 (570)
Q Consensus 86 mG 87 (570)
.+
T Consensus 83 ~~ 84 (85)
T 1ip9_A 83 HD 84 (85)
T ss_dssp EE
T ss_pred ec
Confidence 65
No 109
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=81.45 E-value=4.6 Score=38.91 Aligned_cols=72 Identities=11% Similarity=0.216 Sum_probs=52.8
Q ss_pred EEEEEEECCEE---EEEEeCCCCCHHHHHHHHHHHhCCCCC-Cceeee--ccCCCCCCCCCCCCccccccccccccCCCc
Q 008299 8 LKVSAIWRGKK---YVVEVNSGSPLKELGHELQKLTDVKAD-TMRFIV--PQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (570)
Q Consensus 8 ItItVkwrGk~---~~I~L~~daTV~dLK~~Ie~lTgVPpe-~QKLL~--pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~ 81 (570)
+.|++....+. +++.+...+|+.+|...+.++++|+++ .-+|-. ...+..+|.+ ...||.+++|..|+
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~------~~~tl~~~~l~~~Q 201 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNK------PDSTIQDAGLYQGQ 201 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCC------TTSBHHHHTCCTTC
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCC------CCCCHHHhCCCCCC
Confidence 45677777655 567889999999999999999999998 477753 2222233322 12678899999999
Q ss_pred eEEE
Q 008299 82 SIRM 85 (570)
Q Consensus 82 KImL 85 (570)
.|.|
T Consensus 202 ~ill 205 (217)
T 4a3p_A 202 VLVI 205 (217)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9876
No 110
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=80.50 E-value=0.33 Score=47.94 Aligned_cols=71 Identities=13% Similarity=0.299 Sum_probs=0.0
Q ss_pred CeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 6 ~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
.-|+|.|...|+...|.+..++++..|+.+.++..|+++..++|+| .|..+.. ..|..++++..|-.|-+
T Consensus 20 e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLF---DGqRI~d-------ddTPadL~MEDGDtIDV 89 (227)
T 3v7o_A 20 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRIQA-------DQTPEDLDMEDNDIIEA 89 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEE---CCEecCC-------CCCHHHcCCCCCCEEEE
Confidence 3688888888888889999999999999999999999999999999 6764442 13345667788877766
Q ss_pred e
Q 008299 86 M 86 (570)
Q Consensus 86 m 86 (570)
+
T Consensus 90 ~ 90 (227)
T 3v7o_A 90 H 90 (227)
T ss_dssp -
T ss_pred E
Confidence 4
No 111
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=80.38 E-value=4.1 Score=39.12 Aligned_cols=51 Identities=16% Similarity=0.361 Sum_probs=45.4
Q ss_pred CeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCC
Q 008299 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKL 59 (570)
Q Consensus 6 ~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~L 59 (570)
+.|+|.|.-.|+...|.+..++++.-|+.+.++..|++++.++|++ .|..+
T Consensus 20 ~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~f---dG~~i 70 (209)
T 3uf8_A 20 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRI 70 (209)
T ss_dssp SEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEE---TTEEC
T ss_pred CcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEE---CCEec
Confidence 4789999887788889999999999999999999999999999999 56543
No 112
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=79.49 E-value=0.87 Score=39.27 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.3
Q ss_pred cchHHHHHHHHHHhhhhccCCc
Q 008299 224 RKYESIKKTLLHELAHMVYSEH 245 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnvhg~H 245 (570)
+.-+++..+|.|||+|+.++.+
T Consensus 78 l~~~El~aVlaHElgH~~~~h~ 99 (107)
T 3cqb_A 78 MTRDEAEAVLAHEVSHIANGDM 99 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHHHHCCCH
Confidence 4679999999999999998764
No 113
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=77.99 E-value=6.9 Score=33.97 Aligned_cols=71 Identities=8% Similarity=0.132 Sum_probs=55.9
Q ss_pred CCeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 5 ~~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
+..|+|.|+++|...-|.+-.++-+.-|..+.++.-||.+..-.+|+ .|..+... .|-.++++..|-.|=
T Consensus 19 ~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlf---DG~rI~~~-------~TP~~L~meD~DiID 88 (95)
T 2l76_A 19 PRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLF---GETELSPT-------ATPRTLKLGVADIID 88 (95)
T ss_dssp CCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEE---TTEECCTT-------SCHHHHTCCSSCEEE
T ss_pred CCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEE---CCcCCCCC-------CCHhHcCCCCCCEEE
Confidence 34699999999999999999999999999999999999999999999 67544421 222345666665554
Q ss_pred E
Q 008299 85 M 85 (570)
Q Consensus 85 L 85 (570)
.
T Consensus 89 ~ 89 (95)
T 2l76_A 89 C 89 (95)
T ss_dssp E
T ss_pred E
Confidence 3
No 114
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=77.39 E-value=7.2 Score=34.74 Aligned_cols=73 Identities=16% Similarity=0.270 Sum_probs=54.0
Q ss_pred CeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeee--ccCCCCCCCCCCCCccccccccccccCCCce
Q 008299 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV--PQNKGSKLLSPFSDEHSSLSLQEVSIIEGKS 82 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~--pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~K 82 (570)
..++|.|.+ .|+.+.-.++.+.||.+|..-|... +.++..-.|+. |+ +.+.. .| ...+|.++||.+...
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPr---k~l~~--~d--~~~TL~e~gL~psa~ 113 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPR---RKLSH--LD--YDITLQEAGLCPQET 113 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSC---CEETS--SC--SSSCTTTTTCCSSBC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCC---cCCcc--CC--CCCCHHHCCCCCceE
Confidence 468889987 6777888999999999999999887 77777778873 32 11210 12 247899999998777
Q ss_pred EEEe
Q 008299 83 IRMM 86 (570)
Q Consensus 83 ImLm 86 (570)
|+|-
T Consensus 114 Liv~ 117 (124)
T 1wj4_A 114 VFVQ 117 (124)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 6653
No 115
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=77.15 E-value=0.48 Score=49.75 Aligned_cols=72 Identities=13% Similarity=0.290 Sum_probs=0.0
Q ss_pred CeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 6 ~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
..|+|.|+-.|+...|.+-.++++..|+.+.++..|+++..+++++ .|..+.. ..|..++++..|-.|-+
T Consensus 20 ~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlF---dG~rI~~-------~~TP~~L~MEDgD~Idv 89 (360)
T 3ix6_A 20 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRIQA-------DQTPEDLDMEDNDIIEA 89 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEE---CCeECCC-------CCChHHcCCCccchhhh
Confidence 4689999988888889999999999999999999999999999999 6765542 13445677888877765
Q ss_pred ec
Q 008299 86 MG 87 (570)
Q Consensus 86 mG 87 (570)
+-
T Consensus 90 ~~ 91 (360)
T 3ix6_A 90 HR 91 (360)
T ss_dssp --
T ss_pred hh
Confidence 43
No 116
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=77.02 E-value=3.7 Score=35.30 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=54.0
Q ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 8 ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
++|+|.. +++.++|.+.++.|+.++=++-++.+|+.++.--|.. +++ ..+ . .+.+.-.||.+|.|+.|+
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh---~~k-~lD----L--SlpfRlsgLpnnAkLELv 79 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKF---QRT-VLD----L--SLQWRFANLPNNAKLEMV 79 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEE---TTE-EES----S--SCBHHHHCCCSSCEEEEE
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEe---CCE-ecc----c--cceeEecCCCCCCEEEEE
Confidence 3566664 8889999999999999988888899999887666665 333 221 1 133444699999999998
Q ss_pred ccch
Q 008299 87 GVSE 90 (570)
Q Consensus 87 GS~~ 90 (570)
=++.
T Consensus 80 ~~s~ 83 (90)
T 2al3_A 80 PVSR 83 (90)
T ss_dssp CSSS
T ss_pred EccC
Confidence 6553
No 117
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=75.82 E-value=7.2 Score=39.31 Aligned_cols=74 Identities=14% Similarity=0.089 Sum_probs=49.4
Q ss_pred EEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCC-CCCCCCCCCccccccccccccCCCceEEEec
Q 008299 9 KVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKG-SKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (570)
Q Consensus 9 tItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG-~~Lk~pfsD~~~~ltLse~gLk~G~KImLmG 87 (570)
.+......+.+.+.+.+..|+.+|++.|++.|+|+++.|.||+. + +....|.... ..+. .-+.-..|+|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~---~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~ 385 (396)
T 4eut_A 314 HVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYE---GRRLVLEPGRLA---QHFP--KTTEENPIFVVS 385 (396)
T ss_dssp EEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESS---SSEECCCSSCBT---TSSC--CCCSSSCEEEEE
T ss_pred EEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhc---CCCCCCCCCCcc---ccCC--CCCCCCCeEEEe
Confidence 44444556677788899999999999999999999999999983 4 3222232111 1111 123556788877
Q ss_pred cch
Q 008299 88 VSE 90 (570)
Q Consensus 88 S~~ 90 (570)
...
T Consensus 386 ~~~ 388 (396)
T 4eut_A 386 REG 388 (396)
T ss_dssp CC-
T ss_pred cCC
Confidence 653
No 118
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=74.68 E-value=11 Score=33.12 Aligned_cols=43 Identities=5% Similarity=0.119 Sum_probs=37.5
Q ss_pred CCCCeEEEEEEECCEEEEEEeC--CCCCHHHHHHHHHHHhCCCCC
Q 008299 3 DLGSMLKVSAIWRGKKYVVEVN--SGSPLKELGHELQKLTDVKAD 45 (570)
Q Consensus 3 ~~~~~ItItVkwrGk~~~I~L~--~daTV~dLK~~Ie~lTgVPpe 45 (570)
.|+..++|.|.|+|..+.|.|. .+.|+.+|...+...++...-
T Consensus 10 ~m~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~~ 54 (101)
T 1wj6_A 10 SMEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTI 54 (101)
T ss_dssp SSCSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSSB
T ss_pred ccCccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCce
Confidence 4667899999999999998774 489999999999999999744
No 119
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=74.58 E-value=1.3 Score=47.99 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.2
Q ss_pred cchHHHHHHHHHHhhhhccCCcc
Q 008299 224 RKYESIKKTLLHELAHMVYSEHD 246 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnvhg~Hd 246 (570)
+.-++|..+++|||+|..|+.--
T Consensus 324 l~~~El~aVlaHElgH~~~~~~~ 346 (482)
T 4aw6_A 324 CKNEEVLAVLGHELGHWKLGHTV 346 (482)
T ss_dssp CCHHHHHHHHHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHcccHH
Confidence 78899999999999999987643
No 120
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=74.04 E-value=15 Score=35.76 Aligned_cols=72 Identities=14% Similarity=0.246 Sum_probs=52.0
Q ss_pred EEEEEEECCEE---EEEEeCCCCCHHHHHHHHHHHhCCCCC-Cceeeecc--CCCCCCCCCCCCccccccccccccCCCc
Q 008299 8 LKVSAIWRGKK---YVVEVNSGSPLKELGHELQKLTDVKAD-TMRFIVPQ--NKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (570)
Q Consensus 8 ItItVkwrGk~---~~I~L~~daTV~dLK~~Ie~lTgVPpe-~QKLL~pk--~KG~~Lk~pfsD~~~~ltLse~gLk~G~ 81 (570)
+.|++....+. +++.+....|+.+|+..+.++++|+++ .-+|-.-- .+..+|.+ . ..+|.+++|..|+
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~----~--~~tl~d~~L~~~Q 213 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSK----L--DNTIQDAGLYQGQ 213 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCC----T--TSBTTTTTCCTTE
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcC----C--CCCHHHhCCCCCC
Confidence 56677777764 456779999999999999999999998 47775421 12222221 1 2578889999999
Q ss_pred eEEE
Q 008299 82 SIRM 85 (570)
Q Consensus 82 KImL 85 (570)
.|.|
T Consensus 214 ~ill 217 (231)
T 3jyu_A 214 VLVI 217 (231)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 121
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=72.64 E-value=9.5 Score=32.66 Aligned_cols=42 Identities=5% Similarity=0.148 Sum_probs=37.2
Q ss_pred CCCCeEEEEEEECCEEEEEEeCC--CCCHHHHHHHHHHHhCCCC
Q 008299 3 DLGSMLKVSAIWRGKKYVVEVNS--GSPLKELGHELQKLTDVKA 44 (570)
Q Consensus 3 ~~~~~ItItVkwrGk~~~I~L~~--daTV~dLK~~Ie~lTgVPp 44 (570)
.|+..++|.|.|+|.++.|.+.. +.|+.+|...+...+|...
T Consensus 2 ~~~~~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~ 45 (87)
T 2bkf_A 2 AMEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT 45 (87)
T ss_dssp CCCCCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS
T ss_pred CCCceEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCCc
Confidence 46778999999999999987754 8999999999999999973
No 122
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=72.00 E-value=4.3 Score=36.87 Aligned_cols=32 Identities=6% Similarity=0.126 Sum_probs=29.4
Q ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 008299 14 WRGKKYVVEVNSGSPLKELGHELQKLTDVKAD 45 (570)
Q Consensus 14 wrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe 45 (570)
.+|+..++.++.+.||..+...|+..+||+..
T Consensus 19 lDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 19 LDGTVKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp TTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred CCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 48889999999999999999999999999854
No 123
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=68.31 E-value=1 Score=46.58 Aligned_cols=71 Identities=13% Similarity=0.297 Sum_probs=0.0
Q ss_pred CeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 6 ~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
..|+|+|+..|....|.+..++++..|+...++..|+++..++|++ .|..+.. ..|-.++++..|-.|-+
T Consensus 29 ~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f---~G~~i~~-------~~Tp~~l~med~d~i~~ 98 (389)
T 4da1_A 29 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRIQA-------DQAPEDLDMEDNDIIEA 98 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE---CCEEcCC-------CCCHHHcCCCCCCEeee
Confidence 4689999888888889999999999999999999999999999999 6764442 13345567777766644
Q ss_pred e
Q 008299 86 M 86 (570)
Q Consensus 86 m 86 (570)
+
T Consensus 99 ~ 99 (389)
T 4da1_A 99 H 99 (389)
T ss_dssp -
T ss_pred e
Confidence 3
No 124
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=62.36 E-value=5.5 Score=35.89 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=30.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCceeee
Q 008299 19 YVVEVNSGSPLKELGHELQKLTDVKADTMRFIV 51 (570)
Q Consensus 19 ~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~ 51 (570)
..+.+...+|+.+|+..|++.+|||++.|+|-.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 357888899999999999999999999999964
No 125
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A
Probab=62.05 E-value=19 Score=36.71 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=35.7
Q ss_pred hHHHHhhcCe-eeccccccCCCCCCCCCCCcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCCcc
Q 008299 170 IIAIMNKHRW-RVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHD 246 (570)
Q Consensus 170 V~pIMr~h~w-~V~~L~Ef~P~~~~~~s~~~lLGlN~N~Gq~I~LRLRt~d~~~Flp~e~V~~tlLHELaHnvhg~Hd 246 (570)
+.-|+.+.|. .|-. .+| +. ..|+-.+..-.|.|--+ ++...-+-||+|||+|.+...+.
T Consensus 54 ~~~Iae~lGI~~V~~-~~L-~~---------~~G~~~~~~~~I~LN~~-------~~~~rqrFTLAHELGHllLh~~~ 113 (301)
T 3dte_A 54 THSLMHGLDGITLTF-MPM-GQ---------RDGAYDPEHHVILINSQ-------VRPERQRFTLAHEISHALLLGDD 113 (301)
T ss_dssp HHHHHHTCSSCEEEE-ECC-TT---------CCEEEETTTTEEEEETT-------SCHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHCCCcEEEE-EcC-CC---------CCEEEECCCcEEEEcCC-------CChhhHHHHHHHHHHHHHhcccc
Confidence 5677777776 5532 222 11 23443344455555433 25678889999999999876554
No 126
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Probab=60.44 E-value=4.4 Score=39.39 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=21.7
Q ss_pred cchHHHHHHHHHHhhhhccCCccHhH
Q 008299 224 RKYESIKKTLLHELAHMVYSEHDANF 249 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnvhg~Hd~~F 249 (570)
.+....-.||.|||.||.-++||...
T Consensus 177 ~~~~~~a~~~AHElGHnlG~~HD~~~ 202 (257)
T 2ddf_A 177 ILTKEADLVTTHELGHNFGAEHDPDG 202 (257)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCCTT
T ss_pred cccceeeeeeeeehhhhcCcccCCCC
Confidence 44556789999999999999999763
No 127
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A
Probab=59.38 E-value=4.2 Score=38.08 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhhccCCccHh
Q 008299 228 SIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 228 ~V~~tlLHELaHnvhg~Hd~~ 248 (570)
.+..||.|||.|+.-++||..
T Consensus 132 ~~a~~~AHElGH~lG~~HD~~ 152 (197)
T 1bud_A 132 LVAITLAHEMAHNLGVSHDEG 152 (197)
T ss_dssp HHHHHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHHHHHhhhcCCccCCC
Confidence 368899999999999999986
No 128
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9
Probab=59.10 E-value=3.8 Score=38.33 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhhccCCccHh
Q 008299 229 IKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 229 V~~tlLHELaHnvhg~Hd~~ 248 (570)
+..||.|||.|+.-++||..
T Consensus 135 ~a~~~AHElGH~lG~~HD~~ 154 (197)
T 1qua_A 135 MAVTMAHELGHNLGMNHDGA 154 (197)
T ss_dssp HHHHHHHHHHHHTTCCCCCG
T ss_pred HHHHHHHHHHHhcCCCCCCC
Confidence 68899999999999999987
No 129
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Probab=59.04 E-value=4 Score=38.71 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhhhccCCccHh
Q 008299 228 SIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 228 ~V~~tlLHELaHnvhg~Hd~~ 248 (570)
.+..||.|||.||.-++||..
T Consensus 140 ~~a~~~AHElGHnlG~~HD~~ 160 (217)
T 3b8z_A 140 HAAFTVAHEIGHLLGLSHDDS 160 (217)
T ss_dssp SHHHHHHHHHHHHTTCCCTTS
T ss_pred chhhhhHhhhhhhcCCcCCCC
Confidence 467899999999999999975
No 130
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=57.71 E-value=4.6 Score=37.92 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhccCCccHh
Q 008299 228 SIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 228 ~V~~tlLHELaHnvhg~Hd~~ 248 (570)
.+..||.|||.|+.-++||..
T Consensus 135 ~~a~~~AHElGH~lG~~HD~~ 155 (202)
T 2w15_A 135 WVAVTMAHELGHNLGIHHDTG 155 (202)
T ss_dssp HHHHHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHHHHHhhhcCCccCCC
Confidence 468899999999999999987
No 131
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=57.10 E-value=4.8 Score=37.88 Aligned_cols=20 Identities=40% Similarity=0.562 Sum_probs=18.6
Q ss_pred HHHHHHHHhhhhccCCccHh
Q 008299 229 IKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 229 V~~tlLHELaHnvhg~Hd~~ 248 (570)
+..||.|||.||.-++||..
T Consensus 136 ~a~~~AHElGHnlG~~HD~~ 155 (202)
T 1atl_A 136 MGVTMAHELGHNLGMEHDGK 155 (202)
T ss_dssp HHHHHHHHHHHHTTCCCCCT
T ss_pred eEEEehhhhccccCceeCCC
Confidence 67899999999999999986
No 132
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Probab=56.62 E-value=4.7 Score=37.95 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhhccCCccHhH
Q 008299 229 IKKTLLHELAHMVYSEHDANF 249 (570)
Q Consensus 229 V~~tlLHELaHnvhg~Hd~~F 249 (570)
+..||.|||.|+.-++||...
T Consensus 135 ~a~~~AHElGH~lG~~HD~~~ 155 (202)
T 1yp1_A 135 MAVVMAHELGHNLGMLHDDGY 155 (202)
T ss_dssp HHHHHHHHHHHHTTCCCCCTT
T ss_pred HHHHHHHHHHHhcCCCCCCCC
Confidence 678999999999999999873
No 133
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Probab=56.55 E-value=4.9 Score=37.88 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhhccCCccHh
Q 008299 228 SIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 228 ~V~~tlLHELaHnvhg~Hd~~ 248 (570)
.+..||.|||.|+.-++||..
T Consensus 137 ~~a~~~AHElGH~lG~~HD~~ 157 (203)
T 1kuf_A 137 MVAVTMTHELGHNLGMEHDDK 157 (203)
T ss_dssp HHHHHHHHHHHHHTTCCCCCT
T ss_pred hhHHHHHHHhhhhcCCCCCCC
Confidence 478899999999999999987
No 134
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*
Probab=56.21 E-value=4.6 Score=40.24 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhhhccCCccHh
Q 008299 228 SIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 228 ~V~~tlLHELaHnvhg~Hd~~ 248 (570)
.+..||.|||.||.-++||..
T Consensus 142 ~~a~t~AHElGHnlG~~HD~~ 162 (300)
T 2v4b_A 142 QAAFTTAHELGHVFNMPHDDA 162 (300)
T ss_dssp THHHHHHHHHHHHTTCCCTTS
T ss_pred cceehhhhhhhhhcCCcCCCC
Confidence 367899999999999999964
No 135
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}
Probab=55.30 E-value=6.4 Score=37.23 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHhhhhccCCccHh
Q 008299 226 YESIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 226 ~e~V~~tlLHELaHnvhg~Hd~~ 248 (570)
+..+-.||.|||.||.-++||..
T Consensus 130 ~~~~a~~~AHElGH~lG~~HD~~ 152 (208)
T 4dd8_A 130 PVGVACTMAHEMGHNLGMDHDEN 152 (208)
T ss_dssp HHHHHHHHHHHHHHHTTCCCGGG
T ss_pred hhHHHHHHHHHHHHHcCCcCCCC
Confidence 34456899999999999999965
No 136
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A {Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Probab=54.77 E-value=6.1 Score=39.13 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHHhhhhccCCccHhH
Q 008299 224 RKYESIKKTLLHELAHMVYSEHDANF 249 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnvhg~Hd~~F 249 (570)
.++.....||.|||.||.-++||...
T Consensus 183 ~~~~~~a~~~AHElGHnlGm~HD~~~ 208 (288)
T 2i47_A 183 ILTKEADLVTTHELGHNFGAEHDPDG 208 (288)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred cchhhHHHHHHHHHHhhcCCccCCCC
Confidence 44556789999999999999999763
No 137
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=54.41 E-value=5.1 Score=41.28 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhhccCCccHh
Q 008299 228 SIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 228 ~V~~tlLHELaHnvhg~Hd~~ 248 (570)
.+..||.|||.||.-++||..
T Consensus 142 ~~a~~~AHElGHnlGm~HD~~ 162 (378)
T 2rjq_A 142 HAAFTVAHEIGHLLGLSHDDS 162 (378)
T ss_dssp THHHHHHHHHHHHTTCCCTTS
T ss_pred chhhhhhhhhhhhcCccCCCC
Confidence 367899999999999999975
No 138
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A
Probab=53.20 E-value=5.5 Score=40.05 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhhccCCccHh
Q 008299 228 SIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 228 ~V~~tlLHELaHnvhg~Hd~~ 248 (570)
.+..||.|||.||.-++||..
T Consensus 142 ~~a~t~AHElGHnlGm~HD~~ 162 (316)
T 2rjp_A 142 QSAFTAAHQLGHVFNMLHDNS 162 (316)
T ss_dssp THHHHHHHHHHHHTTCCCTTS
T ss_pred hHHHHHHHHHHhhcCccCCCC
Confidence 567899999999999999975
No 139
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=52.34 E-value=33 Score=34.86 Aligned_cols=70 Identities=9% Similarity=0.113 Sum_probs=50.4
Q ss_pred eEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhC----CCCCCceeeecc---CCCCCCCCCCCCccccccccccccCC
Q 008299 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTD----VKADTMRFIVPQ---NKGSKLLSPFSDEHSSLSLQEVSIIE 79 (570)
Q Consensus 7 ~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTg----VPpe~QKLL~pk---~KG~~Lk~pfsD~~~~ltLse~gLk~ 79 (570)
.+++.|...+.+.++.++++.||.|.-..|.+.+. .+++.--|+.+. .||.-|.. ..+|..+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~-------~~~l~~y~~~~ 75 (371)
T 3ivf_A 3 ALSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEA-------GKALDYYMLRN 75 (371)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCT-------TSBGGGGTCCT
T ss_pred cEEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccC-------CCCHHHhCCCC
Confidence 57888888899999999999999999999988774 367777888732 13332331 13566677776
Q ss_pred CceE
Q 008299 80 GKSI 83 (570)
Q Consensus 80 G~KI 83 (570)
|..|
T Consensus 76 ~~~l 79 (371)
T 3ivf_A 76 GDTM 79 (371)
T ss_dssp TCEE
T ss_pred Ccee
Confidence 6543
No 140
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.01 E-value=35 Score=29.38 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=50.3
Q ss_pred CCeEEEEEEECCEEEE-EEeCCCCCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCC
Q 008299 5 GSMLKVSAIWRGKKYV-VEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIE 79 (570)
Q Consensus 5 ~~~ItItVkwrGk~~~-I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~ 79 (570)
+.++.+.|.|.+...+ +.+.+..++++|--.|++...+.|++--|+- ..+...+. ....+|.++||+.
T Consensus 8 E~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~----d~~~~e~L---dLskSLndlgirE 76 (91)
T 2daj_A 8 EKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLK----DYQSQEPL---DLTKSLNDLGLRE 76 (91)
T ss_dssp CSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEES----CSSCCCBC---CTTSCHHHHTCSE
T ss_pred ccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEec----CCCCCccc---chhcchhhhhhhh
Confidence 3589999999887655 6899999999999999999999999988773 22111111 1125677788754
No 141
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=51.41 E-value=6.2 Score=45.81 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHhhhhccCC
Q 008299 225 KYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 225 p~e~V~~tlLHELaHnvhg~ 244 (570)
.+..|..+++|||||+++|+
T Consensus 291 ~~~~i~~vIAHElAHQWFGN 310 (889)
T 3ebh_A 291 SYARILTVVGHEYFHQYTGN 310 (889)
T ss_dssp HHHHHHHHHHHHHHTTTBTT
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 46678999999999999996
No 142
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=49.59 E-value=6.9 Score=45.08 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=17.9
Q ss_pred chHHHHHHHHHHhhhhccCC
Q 008299 225 KYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 225 p~e~V~~tlLHELaHnvhg~ 244 (570)
.+..|..+++|||||+++|+
T Consensus 283 ~~~~i~~vIaHElAHqWfGn 302 (867)
T 2gtq_A 283 DFEGIESVVGHEYFHNWTGN 302 (867)
T ss_dssp HHHHHHHHHHHHHHTTTBTT
T ss_pred HHHHHHHHHHHHHHHHhcCc
Confidence 46788999999999999996
No 143
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A*
Probab=49.41 E-value=7.1 Score=37.08 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhhccCCccHh
Q 008299 228 SIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 228 ~V~~tlLHELaHnvhg~Hd~~ 248 (570)
.+..||.|||.||.-++||..
T Consensus 135 ~~a~~~AHElGHnlG~~HD~~ 155 (214)
T 1r55_A 135 GAAATMAHEIGHSLGLSHDPD 155 (214)
T ss_dssp HHHHHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHHHHHHHhcCCcCCCC
Confidence 467999999999999999985
No 144
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=48.25 E-value=7.3 Score=38.09 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHhhhhccCCccHhHH
Q 008299 225 KYESIKKTLLHELAHMVYSEHDANFY 250 (570)
Q Consensus 225 p~e~V~~tlLHELaHnvhg~Hd~~F~ 250 (570)
.-+++..||.|||+|..++.+-..+.
T Consensus 96 ~~~ELaaVLaHElgH~~~~H~~~~~~ 121 (253)
T 3c37_A 96 NETELAGVLAHEINHAVARHGTRQMT 121 (253)
T ss_dssp SHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 56899999999999999886654433
No 145
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=48.07 E-value=7.6 Score=43.97 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=19.2
Q ss_pred CccchHHHHHHHHHHhhhhccCC
Q 008299 222 GFRKYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 222 ~Flp~e~V~~tlLHELaHnvhg~ 244 (570)
....+..+..+++|||||.++|+
T Consensus 252 ~~~~~~~~~~viaHElaHqWfGn 274 (780)
T 1z5h_A 252 AVTVKRNSANVIAHEIAHQWFGD 274 (780)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBTT
T ss_pred CHHHHHHHHHHHHHHHHHHHhCC
Confidence 34456779999999999999995
No 146
>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A 3zvs_A 4a3w_A*
Probab=47.66 E-value=9.8 Score=35.55 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHhhhhccCCcc
Q 008299 226 YESIKKTLLHELAHMVYSEHD 246 (570)
Q Consensus 226 ~e~V~~tlLHELaHnvhg~Hd 246 (570)
...+.++++|||.|+.-..|-
T Consensus 111 ~~r~~k~~~HElGH~lGL~HC 131 (163)
T 4axq_A 111 RERVVKEAVHEIGHVLGLKHC 131 (163)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHcCCCCC
Confidence 567999999999999999994
No 147
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=46.83 E-value=15 Score=41.34 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=34.3
Q ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeec
Q 008299 15 RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (570)
Q Consensus 15 rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~p 52 (570)
..+.+.+.+.++.|+.+|+..|++.|||++++|-|+++
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~ 357 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQA 357 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhc
Confidence 45556788899999999999999999999999999985
No 148
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=46.39 E-value=8.3 Score=44.69 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.3
Q ss_pred cchHHHHHHHHHHhhhhccCC
Q 008299 224 RKYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 224 lp~e~V~~tlLHELaHnvhg~ 244 (570)
..+..|..+++|||||+++|+
T Consensus 307 ~~~~~i~~vIAHElAHqWFGN 327 (891)
T 3b34_A 307 KDYLDIERVIGHEYFHNWTGN 327 (891)
T ss_dssp HHHHHHHHHHHHHHHTTTBTT
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 346788999999999999995
No 149
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*
Probab=46.28 E-value=9.1 Score=40.43 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhhccCCccHh
Q 008299 227 ESIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 227 e~V~~tlLHELaHnvhg~Hd~~ 248 (570)
..+..||.|||.||.-++||..
T Consensus 144 ~~~a~t~AHElGHnlG~~HD~~ 165 (427)
T 2ero_A 144 HLVAIAMAHEMGHNLGMDHDKD 165 (427)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCT
T ss_pred hHHHHHHHHHHHHhcCCccCCC
Confidence 4567899999999999999987
No 150
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Probab=46.26 E-value=9.2 Score=40.37 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhhhccCCccHh
Q 008299 227 ESIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 227 e~V~~tlLHELaHnvhg~Hd~~ 248 (570)
..+..||.|||.||.-++||..
T Consensus 135 ~~~a~t~AHElGHnlG~~HD~~ 156 (419)
T 2dw0_A 135 LVVAVIMAHEMGHNLGINHDSG 156 (419)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCT
T ss_pred hhhhhhHHHHHHHHcCCccCCC
Confidence 4567899999999999999987
No 151
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=46.00 E-value=28 Score=29.82 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=33.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeec
Q 008299 17 KKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (570)
Q Consensus 17 k~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~p 52 (570)
++|+|.++.++|=.+.|++++.+++|.+..-.-+..
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~ 63 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVV 63 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEe
Confidence 689999999999999999999999999998887764
No 152
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}
Probab=45.44 E-value=9.6 Score=40.30 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhhhccCCccHhH
Q 008299 227 ESIKKTLLHELAHMVYSEHDANF 249 (570)
Q Consensus 227 e~V~~tlLHELaHnvhg~Hd~~F 249 (570)
..+..||.|||.||.-++||...
T Consensus 137 ~~~a~t~AHElGHnlGm~HD~~~ 159 (427)
T 2e3x_A 137 FKTAVIMAHELSHNLGMYHDGKN 159 (427)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCTT
T ss_pred ceeeeehHHHHHHhhCCccCCCC
Confidence 45678999999999999999873
No 153
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=44.68 E-value=9.1 Score=44.06 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHhhhhccCC
Q 008299 225 KYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 225 p~e~V~~tlLHELaHnvhg~ 244 (570)
.+..|..+++|||||.++|+
T Consensus 298 ~~~~~~~viaHElAHqWFGn 317 (897)
T 2xdt_A 298 SKLGITMTVAHELAHQWFGN 317 (897)
T ss_dssp HHHHHHHHHHHHHHTTTBTT
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 45688999999999999996
No 154
>2ejq_A Hypothetical protein TTHA0227; NPPSFA, national project on protein structural and functional analyses; 2.08A {Thermus thermophilus} SCOP: d.92.1.17
Probab=44.55 E-value=9.2 Score=34.65 Aligned_cols=34 Identities=32% Similarity=0.504 Sum_probs=23.6
Q ss_pred ccEEEEEeec--C-CCCCccchHHHHHHHHHHhhhhc
Q 008299 208 GEEISLRLRT--D-DLKGFRKYESIKKTLLHELAHMV 241 (570)
Q Consensus 208 Gq~I~LRLRt--~-d~~~Flp~e~V~~tlLHELaHnv 241 (570)
+..|.|=-|. . .....---+.|+.|++||++|..
T Consensus 65 P~~I~lYR~pi~~~~~~~eeL~~~V~~tvvHEiaHhf 101 (130)
T 2ejq_A 65 GRHIALYYGSFLEVAGEGFDWEAEVWETMLHELRHHL 101 (130)
T ss_dssp CCEEEEEHHHHHHHCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEehHHHHHHhCChhhHHHHHHHHHHHHhHHHH
Confidence 5667766566 1 12345556789999999999954
No 155
>1g12_A Peptidyl-Lys metalloendopeptidase; zinc cordinate,metalloprotease, hydrolase; HET: MAN; 1.60A {Grifola frondosa} SCOP: d.92.1.12 PDB: 1ge5_A* 1ge6_A* 1ge7_A*
Probab=43.96 E-value=7.4 Score=36.13 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhhc
Q 008299 227 ESIKKTLLHELAHMV 241 (570)
Q Consensus 227 e~V~~tlLHELaHnv 241 (570)
..-..||||||+|..
T Consensus 109 ~s~a~tllHE~tH~~ 123 (167)
T 1g12_A 109 DSQAGTLVHESSHFT 123 (167)
T ss_dssp TCHHHHHHHHHHHSG
T ss_pred CCchhhHHHhhhccc
Confidence 456899999999985
No 156
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=43.61 E-value=9.7 Score=43.86 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=20.4
Q ss_pred CCccchHHHHHHHHHHhhhhccCCc
Q 008299 221 KGFRKYESIKKTLLHELAHMVYSEH 245 (570)
Q Consensus 221 ~~Flp~e~V~~tlLHELaHnvhg~H 245 (570)
........+..+++|||||.++|+-
T Consensus 308 s~~~~~~~~~~viaHElAHqWFGnl 332 (909)
T 4fke_A 308 SSISNKERVVTVIAHELAHQWFGNL 332 (909)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTBTTT
T ss_pred CChHHHHHHHHHHHHHHHhhhhcCe
Confidence 3455567889999999999999975
No 157
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=42.85 E-value=51 Score=29.21 Aligned_cols=71 Identities=13% Similarity=0.244 Sum_probs=49.3
Q ss_pred CeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHH-hCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceE
Q 008299 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKL-TDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~l-TgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KI 83 (570)
...+|.|.+ +|+...-.++.+.||.+|..-|... .+.....-.|+-. -+.+ .+.|. ..||.++||.+..-|
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~--fPrk---~l~d~--~~TL~eagL~psavl 123 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTT--FPNK---ELADE--NQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEET--TTTE---ECCST--TCBHHHHTCSSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecC--CCCC---CCCCC--CCcHHHCCCcCceEE
Confidence 457788876 6777888999999999999999986 3455566677641 1111 12232 378999999885443
No 158
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=42.42 E-value=6.1 Score=43.31 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhhccCCc
Q 008299 228 SIKKTLLHELAHMVYSEH 245 (570)
Q Consensus 228 ~V~~tlLHELaHnvhg~H 245 (570)
.+..+++|||||.++|+-
T Consensus 286 ~~~~viaHElAHqWfGnl 303 (608)
T 3u9w_A 286 SLSNVIAHEISHSWTGNL 303 (608)
T ss_dssp TTTHHHHHHHHTTTBTTT
T ss_pred hhHHHHHHHhhhhhhcCc
Confidence 466789999999999964
No 159
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Probab=41.81 E-value=11 Score=39.64 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhhccCCccHh
Q 008299 227 ESIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 227 e~V~~tlLHELaHnvhg~Hd~~ 248 (570)
..+..||.|||.||.-+.||..
T Consensus 137 ~~~a~t~AHElGHnlGm~HD~~ 158 (397)
T 3k7n_A 137 SLVASTITHELGHNLGIHHDKA 158 (397)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCT
T ss_pred chhhhhHHHHHHHHcCCccCCC
Confidence 3577899999999999999976
No 160
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=41.76 E-value=1.1e+02 Score=26.07 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=51.4
Q ss_pred CeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeee--ccCCCCCCCCCCCCccccccccccccCCCce
Q 008299 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV--PQNKGSKLLSPFSDEHSSLSLQEVSIIEGKS 82 (570)
Q Consensus 6 ~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~--pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~K 82 (570)
..++|.|.. .|+.+.-.+..+.||.+|..-|... +..+..-+|+- |+ + .|..+ ...||.++||.+...
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPr---k----~l~~d-~~~TL~e~gL~p~a~ 92 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPR---R----ALEVE-GGSSLEDIGITVDTV 92 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSC---C----BCCCC-SSCBHHHHTCSSCEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCC---c----CCCCC-CCCCHHHcCCCCCeE
Confidence 368888886 5777777899999999999999965 55666777763 32 1 12211 247899999998877
Q ss_pred EEEe
Q 008299 83 IRMM 86 (570)
Q Consensus 83 ImLm 86 (570)
|.+-
T Consensus 93 L~Ve 96 (109)
T 2cr5_A 93 LNVE 96 (109)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7663
No 161
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja atra}
Probab=41.01 E-value=11 Score=39.86 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhhccCCccHh
Q 008299 227 ESIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 227 e~V~~tlLHELaHnvhg~Hd~~ 248 (570)
..+..||.|||.||.-+.||..
T Consensus 142 ~~~a~t~AHElGHnlGm~HD~~ 163 (422)
T 3k7l_A 142 RMVAITMAHEMGHNLGMNHDRG 163 (422)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCS
T ss_pred hhhhHHHHHHHHHHcCCccCCC
Confidence 3577899999999999999975
No 162
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=40.90 E-value=80 Score=26.72 Aligned_cols=70 Identities=10% Similarity=0.153 Sum_probs=50.2
Q ss_pred eEEEEEEECC-EEEEEEeCCCCCHHHHHHHHHHHhCCCCC-CceeeeccCCCCCCCCCCCCccccccccccccCCCceEE
Q 008299 7 MLKVSAIWRG-KKYVVEVNSGSPLKELGHELQKLTDVKAD-TMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (570)
Q Consensus 7 ~ItItVkwrG-k~~~I~L~~daTV~dLK~~Ie~lTgVPpe-~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KIm 84 (570)
.|++-+.-.+ ..+.|.++.++||..|-.+-+..-||++. ...|+| -|--|. | ..+++++.+..|--|=
T Consensus 9 ~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllF---DGdRLd-p------~~tp~DlemeD~D~ID 78 (82)
T 3goe_A 9 LITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEF---EGEWLD-P------NDQVQSTELEDEDQVS 78 (82)
T ss_dssp EEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEE---TTEECC-T------TSBGGGSSCCTTCEEE
T ss_pred HHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEE---cCcccC-c------cCChhhhCCcCCceee
Confidence 3444443333 23668899999999999999999999999 899999 565433 2 2456677777776654
Q ss_pred Ee
Q 008299 85 MM 86 (570)
Q Consensus 85 Lm 86 (570)
+|
T Consensus 79 vm 80 (82)
T 3goe_A 79 VV 80 (82)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 163
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=39.54 E-value=54 Score=28.46 Aligned_cols=37 Identities=5% Similarity=0.040 Sum_probs=34.1
Q ss_pred eEEEEEEEC--------CEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 008299 7 MLKVSAIWR--------GKKYVVEVNSGSPLKELGHELQKLTDVK 43 (570)
Q Consensus 7 ~ItItVkwr--------Gk~~~I~L~~daTV~dLK~~Ie~lTgVP 43 (570)
+|.|.|+|+ +..+.|-++++.+..+|..+|.+.++++
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 699999999 6778999999999999999999999876
No 164
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=38.99 E-value=24 Score=32.96 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=26.6
Q ss_pred EEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 008299 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDV 42 (570)
Q Consensus 8 ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgV 42 (570)
+.|+++.+|+.|+++++++.||.++=.....+||+
T Consensus 4 ~~i~~~vNG~~~~~~v~~~~tLLd~LR~~lgl~g~ 38 (166)
T 1n62_A 4 AHIELTINGHPVEALVEPRTLLIHFIREQQNLTGA 38 (166)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHTSCCTTS
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHHHcCCCCcc
Confidence 46888889999999999999999865553233333
No 165
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=38.03 E-value=26 Score=32.69 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=26.6
Q ss_pred EEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 008299 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDV 42 (570)
Q Consensus 8 ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgV 42 (570)
..|+++.+|+.|+++++++.||.++=.....+||+
T Consensus 4 ~~i~~~vNG~~~~~~v~~~~tLLd~LR~~lgltg~ 38 (163)
T 1ffv_A 4 KIITVNVNGKAQEKAVEPRTLLIHFLREELNLTGA 38 (163)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHTSCCTTS
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHHhcCCCccc
Confidence 36888889999999999999999865553234443
No 166
>1eb6_A Neutral protease II; metalloproteinase, zinc, hydrolase; 1.0A {Aspergillus oryzae} SCOP: d.92.1.12
Probab=37.72 E-value=10 Score=35.41 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhhhcc
Q 008299 228 SIKKTLLHELAHMVY 242 (570)
Q Consensus 228 ~V~~tlLHELaHnvh 242 (570)
.--.||||||+|+..
T Consensus 121 ~~a~tllHE~tH~~~ 135 (177)
T 1eb6_A 121 DQATTTLHEFTHAPG 135 (177)
T ss_dssp CHHHHHHHHHHTCTT
T ss_pred cHHHHHHHHHHhhhh
Confidence 578999999999874
No 167
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=37.34 E-value=41 Score=28.90 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=31.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeec
Q 008299 19 YVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (570)
Q Consensus 19 ~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~p 52 (570)
|+|.+++++|=.+.|++++.+++|.+..-.-+..
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~ 58 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNV 58 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCB
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEe
Confidence 9999999999999999999999999998888764
No 168
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=35.90 E-value=30 Score=31.98 Aligned_cols=36 Identities=17% Similarity=-0.005 Sum_probs=27.7
Q ss_pred eEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 008299 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDV 42 (570)
Q Consensus 7 ~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgV 42 (570)
...|+++.+|+.|+++++++.||.++=..+..+|++
T Consensus 2 ~~~i~~~vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~ 37 (161)
T 1rm6_C 2 KNILRLTLNGRAREDLVPDNMLLLDYLRETVGLTGT 37 (161)
T ss_dssp EEEEEEEETTEEEEEEEETTCBHHHHHHHTTCCTTS
T ss_pred CceEEEEECCEEEEEecCCcCcHHHHHHHcCCCccc
Confidence 346888899999999999999998876654334443
No 169
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=35.79 E-value=16 Score=42.61 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=18.5
Q ss_pred ccchHHHHHHHHHHhhhhccCC
Q 008299 223 FRKYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 223 Flp~e~V~~tlLHELaHnvhg~ 244 (570)
......+..+++|||||.++|+
T Consensus 358 ~~~k~~~~~vIaHElAHqWFGn 379 (967)
T 3se6_A 358 ASDKLWVTRVIAHELAHQWFGN 379 (967)
T ss_dssp HHHHHHHHHHHHHHHGGGTBTT
T ss_pred HHhhHhHHHHHHHHHHHHHhcC
Confidence 3445678999999999999996
No 170
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=35.54 E-value=35 Score=29.16 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=33.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeec
Q 008299 17 KKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (570)
Q Consensus 17 k~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~p 52 (570)
++|+|.++..+|=.+.|++++.+++|.+..-.-|..
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~ 57 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHV 57 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeee
Confidence 689999999999999999999999999988877764
No 171
>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, MUR16; 2.00A {Methanocorpusculum labreanum}
Probab=34.70 E-value=19 Score=35.25 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHhhhhccCCccH
Q 008299 226 YESIKKTLLHELAHMVYSEHDA 247 (570)
Q Consensus 226 ~e~V~~tlLHELaHnvhg~Hd~ 247 (570)
.+.|.+|++|||.|+.-.+|-.
T Consensus 140 ~~Rv~k~~~HElGH~lGL~HC~ 161 (210)
T 3lmc_A 140 IDRIVKEGAHEIGHLFGLGHCD 161 (210)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHhcCCCCCC
Confidence 6789999999999999999943
No 172
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=33.87 E-value=17 Score=32.03 Aligned_cols=16 Identities=38% Similarity=0.769 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHhhhhc
Q 008299 226 YESIKKTLLHELAHMV 241 (570)
Q Consensus 226 ~e~V~~tlLHELaHnv 241 (570)
-+.|..|++||+||..
T Consensus 87 ~~~V~~vvvhEiahh~ 102 (114)
T 3e11_A 87 IDEVRKTVVHEIAHHF 102 (114)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 5789999999999965
No 173
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}
Probab=33.28 E-value=21 Score=38.84 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhccCCccHh
Q 008299 228 SIKKTLLHELAHMVYSEHDAN 248 (570)
Q Consensus 228 ~V~~tlLHELaHnvhg~Hd~~ 248 (570)
.+..||.|||.||.-++||..
T Consensus 133 ~~A~t~AHELGHnLGm~HD~~ 153 (510)
T 3g5c_A 133 LMAVTLAQSLAHNIGIISDKR 153 (510)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH
T ss_pred hhhHHHHHHHHHHcCCccCCC
Confidence 478899999999999999975
No 174
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.50A {Methanopyrus kandleri}
Probab=33.26 E-value=21 Score=34.28 Aligned_cols=20 Identities=40% Similarity=0.489 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHhhhhccCCc
Q 008299 226 YESIKKTLLHELAHMVYSEH 245 (570)
Q Consensus 226 ~e~V~~tlLHELaHnvhg~H 245 (570)
...+..|++|||.|+.-..|
T Consensus 136 ~~r~~~~~~HElGH~lGl~H 155 (195)
T 2x7m_A 136 LERVVKELTHELGHTFGLGH 155 (195)
T ss_dssp HHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhhcCCCC
Confidence 34688999999999999999
No 175
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=33.09 E-value=41 Score=28.35 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=33.1
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeec
Q 008299 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (570)
Q Consensus 16 Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~p 52 (570)
.++|+|.++..+|=.+.|++++.+++|.+..-.-+..
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~ 58 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNT 58 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEEC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeec
Confidence 4689999999999999999999999999988777763
No 176
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=32.52 E-value=15 Score=40.49 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=14.5
Q ss_pred HHHHHHHHhhhhccCC
Q 008299 229 IKKTLLHELAHMVYSE 244 (570)
Q Consensus 229 V~~tlLHELaHnvhg~ 244 (570)
+..+++|||||.++|+
T Consensus 295 ~~~viaHElAHqWfGn 310 (632)
T 2xq0_A 295 NIDVIAHELAHSWSGN 310 (632)
T ss_dssp STHHHHHHHHHTTBTT
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5689999999999996
No 177
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=32.16 E-value=40 Score=31.18 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=25.2
Q ss_pred eEEEEEEECCEEEEEEeCCCCCHHHHHHH
Q 008299 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHE 35 (570)
Q Consensus 7 ~ItItVkwrGk~~~I~L~~daTV~dLK~~ 35 (570)
.+.|+|+.+|+.++++++++.||.++-..
T Consensus 9 ~m~i~~~ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 9 LMRISATINGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp CEEEEEEETTEEEEEEECTTSBHHHHHHH
T ss_pred cceEEEEECCEEEEEecCCCCcHHHHHHh
Confidence 46789999999999999999999886654
No 178
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=32.14 E-value=16 Score=40.08 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhhccCC
Q 008299 228 SIKKTLLHELAHMVYSE 244 (570)
Q Consensus 228 ~V~~tlLHELaHnvhg~ 244 (570)
.+..+++|||||.++|+
T Consensus 293 ~~~~viaHElaHqWfGn 309 (605)
T 3cia_A 293 SLVNLIAHELAHSWSGN 309 (605)
T ss_dssp CSTHHHHHHHHHTTBTT
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 46789999999999996
No 179
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=31.65 E-value=74 Score=28.89 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=43.8
Q ss_pred EEeCC----CCCHHHHHHHHHHHhCCCC-------CCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEeccc
Q 008299 21 VEVNS----GSPLKELGHELQKLTDVKA-------DTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMGVS 89 (570)
Q Consensus 21 I~L~~----daTV~dLK~~Ie~lTgVPp-------e~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLmGS~ 89 (570)
|.++. .+|+.+|=..|....|..- ..++|||- ..|.|. -..+|.++|++.|+-|+++.-.
T Consensus 10 l~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD--------~DfDDn-l~k~L~dLgv~~gsfLtv~DEd 80 (127)
T 3onh_A 10 IKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFD--------YDFEDL-NDRTLSEINLGNGSIILFSDEE 80 (127)
T ss_dssp EEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEE--------TTBCTT-TTSBTTTTTCCTTCEEEEEESC
T ss_pred EEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeC--------CCcccc-ccCcHHHcCcCCCcEEEEEccc
Confidence 45553 4799999988988877643 24677771 234443 3468999999999999998764
Q ss_pred hh
Q 008299 90 ED 91 (570)
Q Consensus 90 ~~ 91 (570)
.+
T Consensus 81 de 82 (127)
T 3onh_A 81 GD 82 (127)
T ss_dssp CS
T ss_pred cc
Confidence 33
No 180
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=31.25 E-value=46 Score=33.02 Aligned_cols=42 Identities=10% Similarity=-0.016 Sum_probs=34.7
Q ss_pred CCCCeEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 008299 3 DLGSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKA 44 (570)
Q Consensus 3 ~~~~~ItItVkw-rGk~~~I~L~~daTV~dLK~~Ie~lTgVPp 44 (570)
+....+.+.|.. +|...++.+++.+|+.+|-.+|++.+|+..
T Consensus 13 ~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e 55 (296)
T 3qij_A 13 NLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLE 55 (296)
T ss_dssp ----CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSS
T ss_pred CCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 444578899986 778899999999999999999999999873
No 181
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=30.08 E-value=26 Score=32.45 Aligned_cols=34 Identities=12% Similarity=0.262 Sum_probs=28.8
Q ss_pred CCCCeEEEEEEECCEEEEEEeCCCC---CHHHHHHHH
Q 008299 3 DLGSMLKVSAIWRGKKYVVEVNSGS---PLKELGHEL 36 (570)
Q Consensus 3 ~~~~~ItItVkwrGk~~~I~L~~da---TV~dLK~~I 36 (570)
+.+..+.|+|++++++++++|..+. |..+|..+|
T Consensus 25 ~~~~~~~I~i~~~~~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 25 ERGVEMRLRIRFESAECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp CCSSCCCEEEEETTEEEEECCCTTSCHHHHHHHHHTC
T ss_pred cccCCeEEEEEECCEEEEEEEcCCCCHHHHHHHHHhC
Confidence 3344678999999999999999998 999998876
No 182
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=29.35 E-value=39 Score=31.50 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=23.8
Q ss_pred EEEEEEECCEEEEEEeCCCCCHHHHHH
Q 008299 8 LKVSAIWRGKKYVVEVNSGSPLKELGH 34 (570)
Q Consensus 8 ItItVkwrGk~~~I~L~~daTV~dLK~ 34 (570)
+.|+++.+|+.++++++++.||.++=.
T Consensus 4 ~~i~~~vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLNLNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEEETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEEECCEEEEEecCCCCCHHHHHH
Confidence 568999999999999999999988644
No 183
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=27.96 E-value=93 Score=30.24 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=34.2
Q ss_pred eEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 008299 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKA 44 (570)
Q Consensus 7 ~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVPp 44 (570)
.|+|.|..-..++.|.+++.+|+.+|-++|++.+|+..
T Consensus 1 ~i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e 38 (294)
T 1ef1_A 1 TISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLRE 38 (294)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCC
T ss_pred CEEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 37788988888899999999999999999999999964
No 184
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=27.58 E-value=26 Score=38.65 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHhhhhccCC
Q 008299 225 KYESIKKTLLHELAHMVYSE 244 (570)
Q Consensus 225 p~e~V~~tlLHELaHnvhg~ 244 (570)
.|..++.++.||++|++.|+
T Consensus 263 ~~~~~~~liaHE~~H~W~g~ 282 (597)
T 4fgm_A 263 NYQTFLSLCCHEYFHSWNIK 282 (597)
T ss_dssp HHHHHHHHHHHHHHHTTBTT
T ss_pred hhhchhhhHhhhhheeeccc
Confidence 57788999999999999994
No 185
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=27.44 E-value=34 Score=37.24 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=29.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCceeee
Q 008299 20 VVEVNSGSPLKELGHELQKLTDVKADTMRFIV 51 (570)
Q Consensus 20 ~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~ 51 (570)
.+.+...+|+.+|+.+|++.+|||+++|+|..
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~ 70 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 70 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcCcccEEEEE
Confidence 57888999999999999999999999999953
No 186
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=25.68 E-value=91 Score=26.09 Aligned_cols=63 Identities=10% Similarity=0.045 Sum_probs=36.8
Q ss_pred eEEEEEEECCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEE
Q 008299 7 MLKVSAIWRGKKYVVEVNSG-SPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (570)
Q Consensus 7 ~ItItVkwrGk~~~I~L~~d-aTV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImL 85 (570)
...++|+-+|+.++| +.. .||.+|-++| +++++.-.+.+ .|..+. . ....+..|++|-+|.+
T Consensus 18 ~~~M~I~vNGe~~el--~~~~~Tv~dLL~~L----~~~~~~vaVav---Ng~iV~--~------~~~~~~~L~dGD~Vei 80 (87)
T 1tyg_B 18 GGRHMLQLNGKDVKW--KKDTGTIQDLLASY----QLENKIVIVER---NKEIIG--K------ERYHEVELCDRDVIEI 80 (87)
T ss_dssp ----CEEETTEEECC--SSSCCBHHHHHHHT----TCTTSCCEEEE---TTEEEC--G------GGTTTSBCCSSSEEEE
T ss_pred CcceEEEECCEEEEC--CCCCCcHHHHHHHh----CCCCCCEEEEE---CCEECC--h------hhcCCcCCCCCCEEEE
Confidence 456788999987654 666 8999998877 66665444444 343221 0 0112235678888877
Q ss_pred e
Q 008299 86 M 86 (570)
Q Consensus 86 m 86 (570)
+
T Consensus 81 ~ 81 (87)
T 1tyg_B 81 V 81 (87)
T ss_dssp E
T ss_pred E
Confidence 5
No 187
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.99 E-value=66 Score=27.18 Aligned_cols=37 Identities=11% Similarity=0.302 Sum_probs=33.1
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceeeec
Q 008299 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (570)
Q Consensus 16 Gk~~~I~L~~daTV~dLK~~Ie~lTgVPpe~QKLL~p 52 (570)
.++|+|.++..+|=.+.|++++.+++|.+..-.-+..
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~ 59 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLIT 59 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEc
Confidence 3689999999999999999999999999988777763
No 188
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=24.96 E-value=70 Score=26.07 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=38.2
Q ss_pred EEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCC-CCCceeeeccCCCCCCCCCCCCccccccccccccCCCceEEEe
Q 008299 11 SAIWRGKKYVVEVNSGSPLKELGHELQKLTDVK-ADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (570)
Q Consensus 11 tVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVP-pe~QKLL~pk~KG~~Lk~pfsD~~~~ltLse~gLk~G~KImLm 86 (570)
+|+-+|+.+++..+...||.+|-.++ +++ ++.--+.+ .|..+.. ....+..|++|-+|-++
T Consensus 2 ~I~vNGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVav---Ng~iVpr--------~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 2 NLTVNGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVEL---NGEVLER--------EAFDATTVKDGDAVEFL 63 (78)
T ss_dssp EEEETTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEE---TTEECCT--------THHHHCEECSSBCEEEC
T ss_pred EEEECCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEE---CCEECCh--------HHcCcccCCCCCEEEEE
Confidence 57889997765432678999998877 777 66655544 4432221 11223456788888765
No 189
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=23.23 E-value=1.4e+02 Score=26.15 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=35.1
Q ss_pred CeEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 008299 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVK 43 (570)
Q Consensus 6 ~~ItItVkwrGk~~~I~L~~daTV~dLK~~Ie~lTgVP 43 (570)
..+.|..-|+|.+..|.++-.-+..+|...+.+.+|-+
T Consensus 7 ~dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~ 44 (103)
T 2cu1_A 7 GDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS 44 (103)
T ss_dssp CEEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSC
T ss_pred CcEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCe
Confidence 36889999999999999999999999999999999974
No 190
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=22.64 E-value=1.3e+02 Score=24.97 Aligned_cols=33 Identities=6% Similarity=0.156 Sum_probs=25.1
Q ss_pred EEEEEEE---------CCEEEEEEeC--CCCCHHHHHHHHHHHh
Q 008299 8 LKVSAIW---------RGKKYVVEVN--SGSPLKELGHELQKLT 40 (570)
Q Consensus 8 ItItVkw---------rGk~~~I~L~--~daTV~dLK~~Ie~lT 40 (570)
++|+|++ +.+..+++++ ...||.+|.+.|.+..
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHT
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHC
Confidence 4566665 3456778888 7899999999998775
No 191
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=22.16 E-value=43 Score=23.71 Aligned_cols=16 Identities=44% Similarity=0.559 Sum_probs=14.4
Q ss_pred HhhhhhchhHHHHHHH
Q 008299 541 QELRSIQDTVTVVCSR 556 (570)
Q Consensus 541 ~~~~~~~~~~~~~~~~ 556 (570)
|||+||-|-.-|.|-|
T Consensus 10 QELRRIGDeFNa~ypR 25 (33)
T 1pq1_B 10 QELRRIGDEFNETYTR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhhcccch
Confidence 7999999999988876
No 192
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=20.27 E-value=32 Score=35.59 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhhc
Q 008299 227 ESIKKTLLHELAHMV 241 (570)
Q Consensus 227 e~V~~tlLHELaHnv 241 (570)
..-..||+|||+|+.
T Consensus 285 ~s~a~tllHE~tH~~ 299 (343)
T 2x3c_A 285 DSRAGTIVHQLSHFN 299 (343)
T ss_dssp TCHHHHHHHHHHHST
T ss_pred CccchhHhhhhhccc
Confidence 468899999999974
Done!