Query 008300
Match_columns 570
No_of_seqs 176 out of 953
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 22:04:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2431 1, 2-alpha-mannosidase 100.0 5E-139 1E-143 1077.1 37.1 420 107-536 90-545 (546)
2 PTZ00470 glycoside hydrolase f 100.0 2E-137 4E-142 1126.8 39.6 422 107-536 68-521 (522)
3 KOG2204 Mannosyl-oligosacchari 100.0 2E-132 5E-137 1056.9 27.9 513 14-534 29-625 (625)
4 PF01532 Glyco_hydro_47: Glyco 100.0 1E-128 2E-133 1050.7 26.7 403 118-533 1-452 (452)
5 KOG2429 Glycosyl hydrolase, fa 100.0 9E-111 2E-115 891.4 28.3 401 107-535 29-471 (622)
6 KOG2430 Glycosyl hydrolase, fa 100.0 7.5E-84 1.6E-88 654.2 21.2 398 109-536 7-459 (587)
7 cd00249 AGE AGE domain; N-acyl 98.5 9.9E-06 2.2E-10 85.8 20.6 274 177-477 54-341 (384)
8 KOG2204 Mannosyl-oligosacchari 98.4 6.9E-06 1.5E-10 90.2 14.8 332 107-477 13-369 (625)
9 cd00249 AGE AGE domain; N-acyl 98.2 0.00051 1.1E-08 72.9 24.9 247 203-476 18-277 (384)
10 COG1331 Highly conserved prote 97.6 0.00018 3.9E-09 81.6 8.1 171 105-277 378-569 (667)
11 PF07944 DUF1680: Putative gly 97.3 0.002 4.3E-08 72.3 13.0 212 179-421 128-343 (520)
12 PF07944 DUF1680: Putative gly 97.1 0.0095 2.1E-07 67.0 14.7 238 205-483 25-280 (520)
13 PTZ00470 glycoside hydrolase f 97.0 0.012 2.7E-07 66.1 14.6 176 139-325 297-500 (522)
14 PF07221 GlcNAc_2-epim: N-acyl 96.8 0.048 1E-06 57.6 16.6 242 249-511 27-288 (346)
15 PF07221 GlcNAc_2-epim: N-acyl 96.7 0.029 6.3E-07 59.2 14.3 282 177-487 22-326 (346)
16 PF03663 Glyco_hydro_76: Glyco 96.7 0.00092 2E-08 71.9 2.5 150 183-346 95-257 (370)
17 PF07470 Glyco_hydro_88: Glyco 96.1 0.056 1.2E-06 56.9 11.9 248 181-487 30-301 (336)
18 PF01532 Glyco_hydro_47: Glyco 95.6 0.031 6.7E-07 61.9 7.7 169 150-325 233-434 (452)
19 cd04791 LanC_SerThrkinase Lant 95.2 0.91 2E-05 46.9 16.6 94 174-279 81-175 (321)
20 COG1331 Highly conserved prote 94.3 0.8 1.7E-05 52.9 14.4 280 172-486 265-584 (667)
21 cd04792 LanM-like LanM-like pr 92.9 6.8 0.00015 46.5 19.6 231 185-476 550-785 (825)
22 PF07470 Glyco_hydro_88: Glyco 92.6 0.48 1E-05 49.9 8.7 205 186-417 77-294 (336)
23 cd04791 LanC_SerThrkinase Lant 92.6 0.19 4.2E-06 51.9 5.6 95 174-278 137-232 (321)
24 KOG2429 Glycosyl hydrolase, fa 90.8 4 8.6E-05 46.2 13.4 224 262-516 31-279 (622)
25 COG3533 Uncharacterized protei 89.6 0.54 1.2E-05 52.5 5.5 73 181-273 136-208 (589)
26 COG4403 LcnDR2 Lantibiotic mod 89.6 8.8 0.00019 45.8 15.4 239 171-468 541-823 (963)
27 cd04792 LanM-like LanM-like pr 89.5 24 0.00053 41.9 19.6 232 188-473 503-737 (825)
28 cd04434 LanC_like LanC-like pr 88.9 30 0.00064 35.5 20.8 253 185-485 11-273 (343)
29 PF06917 Pectate_lyase_2: Peri 86.8 1 2.3E-05 50.2 5.5 104 193-296 11-127 (557)
30 cd04794 euk_LANCL eukaryotic L 86.1 38 0.00082 35.8 16.8 266 154-475 29-307 (343)
31 cd04434 LanC_like LanC-like pr 85.0 49 0.0011 33.9 19.9 274 151-473 25-301 (343)
32 PF03663 Glyco_hydro_76: Glyco 82.1 1.7 3.7E-05 46.9 4.6 139 189-343 168-317 (370)
33 PF06917 Pectate_lyase_2: Peri 81.2 0.81 1.8E-05 51.0 1.7 140 116-285 330-479 (557)
34 KOG2430 Glycosyl hydrolase, fa 80.2 17 0.00036 39.2 10.8 202 190-418 199-402 (587)
35 TIGR01577 oligosac_amyl oligos 78.0 71 0.0015 37.0 16.2 265 128-428 293-592 (616)
36 COG2942 N-acyl-D-glucosamine 2 77.8 1.2E+02 0.0025 33.5 16.7 256 201-477 13-342 (388)
37 PF06662 C5-epim_C: D-glucuron 76.5 5.8 0.00013 39.3 5.9 101 231-346 22-131 (189)
38 COG2942 N-acyl-D-glucosamine 2 73.7 13 0.00029 40.6 8.2 134 181-319 179-378 (388)
39 KOG2431 1, 2-alpha-mannosidase 68.5 1.1E+02 0.0023 34.2 13.5 185 260-483 90-287 (546)
40 COG4225 Predicted unsaturated 68.1 1.3E+02 0.0028 32.8 13.8 158 150-323 55-222 (357)
41 cd04793 LanC LanC is the cycla 64.1 21 0.00046 38.2 7.5 134 187-344 183-327 (382)
42 COG4225 Predicted unsaturated 60.6 51 0.0011 35.6 9.3 244 182-485 42-317 (357)
43 cd04794 euk_LANCL eukaryotic L 58.5 2.5E+02 0.0053 29.7 18.4 234 188-472 14-258 (343)
44 TIGR02209 ftsL_broad cell divi 56.2 30 0.00064 29.0 5.5 28 46-73 20-47 (85)
45 TIGR02474 pec_lyase pectate ly 54.0 21 0.00046 37.7 5.1 70 246-318 44-118 (290)
46 PRK11097 endo-1,4-D-glucanase; 49.3 1.6E+02 0.0034 32.5 11.0 142 141-294 66-229 (376)
47 PF09492 Pec_lyase: Pectic aci 45.1 61 0.0013 34.3 6.8 96 245-344 40-143 (289)
48 PF04999 FtsL: Cell division p 43.8 60 0.0013 28.1 5.6 46 32-78 18-63 (97)
49 PF05147 LANC_like: Lanthionin 42.7 6.8 0.00015 40.7 -0.6 124 173-304 103-234 (355)
50 cd04793 LanC LanC is the cycla 42.5 34 0.00074 36.6 4.7 79 185-281 253-331 (382)
51 PF12060 DUF3541: Domain of un 40.3 16 0.00035 36.8 1.6 29 433-470 28-56 (227)
52 PF05545 FixQ: Cbb3-type cytoc 36.6 32 0.0007 26.3 2.5 22 29-50 13-34 (49)
53 PF13204 DUF4038: Protein of u 35.8 14 0.00031 38.6 0.5 84 261-345 83-176 (289)
54 PF01270 Glyco_hydro_8: Glycos 35.1 1.8E+02 0.0038 31.3 8.6 142 139-292 65-225 (342)
55 PF06305 DUF1049: Protein of u 34.2 95 0.0021 24.8 5.0 24 53-76 44-67 (68)
56 KOG2787 Lanthionine synthetase 33.1 57 0.0012 35.2 4.3 149 107-278 179-361 (403)
57 PRK11097 endo-1,4-D-glucanase; 32.4 1.7E+02 0.0038 32.1 8.1 92 380-481 125-220 (376)
58 PF08135 EPV_E5: Major transfo 32.1 53 0.0012 24.9 2.8 22 28-49 13-34 (44)
59 PF05426 Alginate_lyase: Algin 31.5 35 0.00076 34.6 2.5 30 447-476 65-94 (272)
60 COG3533 Uncharacterized protei 28.2 45 0.00097 37.9 2.8 58 393-467 150-207 (589)
61 TIGR02209 ftsL_broad cell divi 28.0 1.5E+02 0.0033 24.7 5.4 40 40-79 18-60 (85)
62 COG4403 LcnDR2 Lantibiotic mod 26.9 79 0.0017 38.2 4.5 74 185-274 751-824 (963)
63 KOG4092 Mitochondrial F1F0-ATP 26.1 25 0.00053 31.3 0.3 35 14-48 60-94 (108)
64 PF06662 C5-epim_C: D-glucuron 24.3 85 0.0018 31.2 3.7 40 442-482 34-73 (189)
65 PF13314 DUF4083: Domain of un 24.2 1.4E+02 0.003 24.3 4.1 42 33-74 15-56 (58)
66 PF12632 Vezatin: Mysoin-bindi 23.6 5.9E+02 0.013 26.1 9.8 95 28-128 23-129 (252)
67 PRK09458 pspB phage shock prot 23.3 1.3E+02 0.0027 25.8 3.9 42 32-73 7-58 (75)
68 PRK00888 ftsB cell division pr 22.7 1.8E+02 0.004 26.0 5.2 45 33-77 3-47 (105)
69 PF11329 DUF3131: Protein of u 22.4 4E+02 0.0086 29.3 8.6 135 180-324 38-181 (367)
70 PF04685 DUF608: Protein of un 21.7 2.6E+02 0.0056 30.5 7.0 198 189-407 112-330 (365)
71 PF06295 DUF1043: Protein of u 20.9 2.6E+02 0.0056 25.8 6.0 42 30-75 2-43 (128)
72 PF10805 DUF2730: Protein of u 20.1 2.2E+02 0.0047 25.5 5.1 48 24-73 4-51 (106)
No 1
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-139 Score=1077.10 Aligned_cols=420 Identities=50% Similarity=0.847 Sum_probs=396.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhccCchhhhH---------------------HHHhcCCCCCChhHHHHHHHHHHhhcC
Q 008300 107 IDIQRKQKVKDAMIHAWSSYEKYAWGQDELQL---------------------LYSMCLFWRISDYSFSSEFMWIANSLD 165 (570)
Q Consensus 107 ~~~~r~~~Vk~aF~haw~~Y~k~Awg~DEL~P---------------------L~IMgl~~~~~~eEF~~A~~~V~~~ld 165 (570)
..++||++|++||.|||.+|+|||||||||+| ++|||| ++||++|++||.++++
T Consensus 90 g~nerq~avv~aF~haW~gYkKyawGhD~l~Pvs~~~~d~fglGltiVDslDT~~iMgl-----e~e~~ea~~Wv~~~L~ 164 (546)
T KOG2431|consen 90 GLNERQKAVVDAFLHAWSGYKKYAWGHDELKPVSQSFSDWFGLGLTIVDSLDTAMIMGL-----EDEFEEAREWVEKKLH 164 (546)
T ss_pred chhHHHHHHHHHHHHHHhhhhhhcccccccccchhcccccccccceEEechhHHHHhhh-----HHHHHHHHHHHHhhcc
Confidence 47999999999999999999999999999999 999999 9999999999999999
Q ss_pred CCCCccccccchhhhhccccceeeccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCcccccc
Q 008300 166 FNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADS 245 (570)
Q Consensus 166 F~~~~~VsvFEttIRvLGGLLSAY~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~ 245 (570)
|+++++||+|||||||||||||||+|||+.+||+||+||||||+|||.+||+|||+.||+.+|.+.+|+|. +.|++||+
T Consensus 165 f~~~~~VNlFEtTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~-~~SStaEv 243 (546)
T KOG2431|consen 165 FEKDRDVNLFETTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWT-GDSSTAEV 243 (546)
T ss_pred cccccceehhhhhHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCC-Cccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 68899999
Q ss_pred ccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCC--CCCCcceEecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCC
Q 008300 246 GTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFP--ADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNK 323 (570)
Q Consensus 246 GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~--~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfYEYLLK~~iL~g~ 323 (570)
.|+||||++||++|||+||++.|++++++|++... .+||+|++||+.||.|..+.|++||+||||||||+|+|||+|+
T Consensus 244 ttiQlEfr~Ls~ltgd~kY~~~a~kv~ehih~~~~~~~dGLvPi~in~~tG~F~~~tI~lGaRgDSyYEYLlKQwlQtg~ 323 (546)
T KOG2431|consen 244 TTIQLEFRYLSRLTGDPKYEELAEKVTEHIHGLGKKKHDGLVPIFINPNTGLFVGSTITLGARGDSYYEYLLKQWLQTGK 323 (546)
T ss_pred eeeeeeHHHHHhhcCCchHHHHHHHHHHHHhccCccccCCeeeEEEcCCCCccccceEEeccccchHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999544 3699999999999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHHHHH-hhcccCCCCCeeeeccCCC-cccccccccccccchhhhhhcCCCCCCCchHHHHHHHH
Q 008300 324 TSAVKPYSRDMWETSMKGLLS-LVRRSTPSSFTYICEKNGD-SLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEE 401 (570)
Q Consensus 324 ~d~~~~~~~~~y~~A~~~i~~-ll~~~~~~~~~~v~~~~g~-~~~~~m~hLsCF~pGmlaLG~~~~~~~~~~~~l~lA~~ 401 (570)
+. ..+ +++|.+||++|++ |++.+.|+++.||+|..+| ++.++||||+||+||+|++|+..+-+ ..++++++|++
T Consensus 324 ~~--~~l-~~dy~~am~gv~~~Llr~S~P~~~~fiGEl~~G~~fsPKMDHLVCFlpGtL~lG~~~Gl~-~~~~hl~lA~~ 399 (546)
T KOG2431|consen 324 SL--TYL-RDDYIEAMEGVRKHLLRQSKPNKLWFIGELPHGLQFSPKMDHLVCFLPGTLALGSTNGLP-ASEEHLELAQE 399 (546)
T ss_pred ch--hHH-HHHHHHHHHHHHHHHHhcCCCcceEEEEecccccccCcccceEEEeecchhhhccccCCC-cchHHHHHHHH
Confidence 88 777 9999999999999 5677889999999998665 88999999999999999999976532 34589999999
Q ss_pred HHHHHHHhhhcCCCCccceeEeecCCCc-------cccccCCCCCchhHHHHHHhHHhhcCCchHHHHHHHHHHHHHHhc
Q 008300 402 LAWTCYNFYQSTPTKLAGENYFFRDGQD-------MSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNS 474 (570)
Q Consensus 402 L~~tC~~~y~~t~tGl~PE~~~f~~~~~-------~~~~~~~y~LRPE~IESlfyLyR~TgD~~Yre~gW~if~ai~~~~ 474 (570)
|++|||+||..+||||+||+++|+..+. +++.|++++||||+|||+|||||+|||.|||||||+|||+|++++
T Consensus 400 l~~TCyqMY~~~~TGLaPEIv~Fn~~~~~~~~DiyvKp~D~HnLlRPEtVESlfylYriT~D~kYqewGW~if~sfekyt 479 (546)
T KOG2431|consen 400 LMETCYQMYRQNPTGLAPEIVHFNLYPQPGKNDIYVKPLDRHNLLRPETVESLFYLYRITGDRKYQEWGWEIFQSFEKYT 479 (546)
T ss_pred HHHHHHHHHccCcCCCCceEEEEeccCCCccCceeeccchhhcccChHHHhhhheeeEecCCchHHHHhHHHHHHHHHhc
Confidence 9999999999999999999999976432 467899999999999999999999999999999999999999999
Q ss_pred ccCc-CccccccCCCC--CCCCCcchHHHHHHHHHHHHhcCCC-CccCCCCeeeccCCCccccccC
Q 008300 475 RIES-GYVGLKDVNTG--DKDNMMQSFFLAETLKYLYLLFSPT-TVISLDEWVFNTEAHPLKIVTQ 536 (570)
Q Consensus 475 r~~~-Gya~i~dV~~~--~~~D~meSFflaETLKYLYLLFsd~-~~isLd~~VFnTEaHPl~i~~~ 536 (570)
|+++ ||++|.||.+. .++|+|||||||||||||||||+|+ +.++||+||||||||||||...
T Consensus 480 rv~~ggytSi~nV~~~~~~~RDkMESF~laETLKYLYLLf~DD~~ilpLdk~VFNTEaHPlPi~~~ 545 (546)
T KOG2431|consen 480 RVPSGGYTSIDNVKDQKPKRRDKMESFWLAETLKYLYLLFSDDQSILPLDKWVFNTEAHPLPIYDN 545 (546)
T ss_pred ccCCCCccchhhhhhcCCchhhhHHHHHHHHHHHHHHHhhcCCcccccchheEeccCCCCCCCCCC
Confidence 9999 89999999763 4599999999999999999999999 7889999999999999999754
No 2
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=100.00 E-value=1.8e-137 Score=1126.82 Aligned_cols=422 Identities=50% Similarity=0.885 Sum_probs=396.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhccCchhhhH---------------------HHHhcCCCCCChhHHHHHHHHHHhhcC
Q 008300 107 IDIQRKQKVKDAMIHAWSSYEKYAWGQDELQL---------------------LYSMCLFWRISDYSFSSEFMWIANSLD 165 (570)
Q Consensus 107 ~~~~r~~~Vk~aF~haw~~Y~k~Awg~DEL~P---------------------L~IMgl~~~~~~eEF~~A~~~V~~~ld 165 (570)
...+||++||+||+|||++|++||||||||+| |||||+ ++||++|++||+++++
T Consensus 68 ~~~~r~~~Vk~~F~haW~~Y~~~Awg~DEL~P~S~~~~~~~g~g~TlVDSLDTL~IMgl-----~~Ef~~a~~~V~~~l~ 142 (522)
T PTZ00470 68 LNIKRRESVREAMKHAWEGYKEYAWGHDELRPLTKRHHEWFGLGLTIIDSLDTLKIMGL-----KKEYKEGRDWVANNLK 142 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCcCccceecCcCCccCCCcchhHHHHHHHHHHHcCC-----hHHHHHHHHHHHhhCC
Confidence 56799999999999999999999999999999 999999 9999999999999899
Q ss_pred C--CCCccccccchhhhhccccceeeccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCcccc
Q 008300 166 F--NKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILA 243 (570)
Q Consensus 166 F--~~~~~VsvFEttIRvLGGLLSAY~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lA 243 (570)
| +++..|||||||||+||||||||+||+|++||+||+||||+|+||||||||||++.||+++|....+.|.++.+++|
T Consensus 143 f~~~~~~~vsvFEttIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~~~~~~lA 222 (522)
T PTZ00470 143 QSKDTGLGVSVFETTIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWAGGCSILS 222 (522)
T ss_pred CCCCCCCeeeeeeeehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccCCCccchh
Confidence 9 66889999999999999999999999999999999999999999999999999999999999998888887889999
Q ss_pred ccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCCC-CCCcceEecCCCCCCCCCeeeecccCchHHHHHHHHHHhcC
Q 008300 244 DSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPA-DGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGN 322 (570)
Q Consensus 244 e~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~~-~GL~p~~id~~tg~~~~~~~t~Ga~~DSfYEYLLK~~iL~g 322 (570)
|+||++|||++||++|||++|+++|++|++.|++.++. +||+|++||+++|+|+++.+++||++|||||||+|+|+|+|
T Consensus 223 e~gSl~LEF~~LS~lTGd~kY~~~a~~i~~~l~~~~~~~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~ 302 (522)
T PTZ00470 223 EVGTLQLEFNYLSEITGDPKYAEYVDKVMDALFSMKPAINGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTN 302 (522)
T ss_pred hhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCCCCCCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcC
Confidence 99999999999999999999999999999999997776 89999999999999999999999999999999999999999
Q ss_pred CCCCcccccHHHHHHHHHHHHHhhcccCCCCCeeeeccCCCcccccccccccccchhhhhhcCC-CC--CCCchHHHHHH
Q 008300 323 KTSAVKPYSRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSG-YG--PGDSEKFLSLA 399 (570)
Q Consensus 323 ~~d~~~~~~~~~y~~A~~~i~~ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLG~~~-~~--~~~~~~~l~lA 399 (570)
+.+ +.| ++||.+||++|+++|...++.+++|+++.+++.+.++|+||+||+|||++|||.. .. ..++++++++|
T Consensus 303 ~~d--~~~-~~~~~~a~~~i~~~l~~~s~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a 379 (522)
T PTZ00470 303 GRE--ERY-RRLFVESAKGIIEHLYKRSPKGLTYIAEMDGGSLTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVG 379 (522)
T ss_pred CCc--HHH-HHHHHHHHHHHHHHhcccCCCCcEEEeeccCCcCcchhhhhhhhccchhhhcccccccccccccHHHHHHH
Confidence 988 889 9999999999999765545668999999999999999999999999999999952 11 12467899999
Q ss_pred HHHHHHHHHhhhcCCCCccceeEeecCCCc---cccccCCCCCchhHHHHHHhHHhhcCCchHHHHHHHHHHHHHHhccc
Q 008300 400 EELAWTCYNFYQSTPTKLAGENYFFRDGQD---MSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRI 476 (570)
Q Consensus 400 ~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~---~~~~~~~y~LRPE~IESlfyLyR~TgD~~Yre~gW~if~ai~~~~r~ 476 (570)
++|++||+++|.++||||+||++.|..+.. +.+.+++|+||||+|||+|||||+|||++||||||+||++|+++|||
T Consensus 380 ~~l~~tC~~~Y~~~~tGl~PE~~~~~~~~~~~~~~~~d~~Y~LRPE~iES~fylyR~TgD~~yre~gW~~f~ai~k~~rt 459 (522)
T PTZ00470 380 EEVTKTCYETYATSPTGLGPEIFHFDPNSGDISPNVHDSHYILRPETVESIFILYRLTGDPKYREWAWKIFQAIEKHCKT 459 (522)
T ss_pred HHHHHHHHHHHHhcccCCCCceEEeccCccccccccCCCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999986421 34578999999999999999999999999999999999999999999
Q ss_pred CcCccccccCCC--CCCCCCcchHHHHHHHHHHHHhcCCCCccCCCCeeeccCCCccccccC
Q 008300 477 ESGYVGLKDVNT--GDKDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKIVTQ 536 (570)
Q Consensus 477 ~~Gya~i~dV~~--~~~~D~meSFflaETLKYLYLLFsd~~~isLd~~VFnTEaHPl~i~~~ 536 (570)
+|||++|+||+. +.++|+|||||||||||||||||||+++|+||+|||||||||||+.+.
T Consensus 460 ~~Gya~i~dV~~~~~~~~D~MeSFflaETLKYlYLlFsd~~~i~ld~~VFnTEAHPl~i~~~ 521 (522)
T PTZ00470 460 ENGYSGLKNVLTVHPQQDDFQESFFLAETLKYLYLLFQPDHVIPLDKYVFNTEAHPIPIQKT 521 (522)
T ss_pred CcccccccccCCCCCCcCCcccchhHHHHHHHHHheecCccccccCCeEECCCCceeecCCC
Confidence 999999999986 456999999999999999999999999999999999999999999764
No 3
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-132 Score=1056.90 Aligned_cols=513 Identities=45% Similarity=0.709 Sum_probs=446.2
Q ss_pred CcccccCccccccCchhHHHHHHHHHHH----HHHHHhcccc------h----------hh-----hhhhhhhhHHHHHH
Q 008300 14 GKLRYCNPAYYLKRPKRLAMLLIVFVSV----TLVVWDRQTL------V----------RE-----HEVELSELNEEVTQ 68 (570)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~----------~~-----~~~~~~~~~~~~~~ 68 (570)
+.|-++++++++++|....++++.++-+ ...++|.... . ++ -+..++.+++++.+
T Consensus 29 ~~~~~Lc~~a~f~~ps~~~~~~~~~~~~~~~~~~~v~d~~n~~~~~~~~~~~~~~~~~~p~~~~~~le~~~s~~~~~~~r 108 (625)
T KOG2204|consen 29 SFQETLCLGANFRLPSSSPLLLIDLLDSSYLCTPLVQDVVNRIIFDFPAPPLAMEVIDAPDITTRVLEGLLSAYEEEMDR 108 (625)
T ss_pred HHHHHhhhhheeeCCCCCchhheeeccchhhhhhHHHhccccccccCCCcccccccccccccchhhhhhhHHHhhHHHHH
Confidence 4678899999999999999998888743 4677888662 1 11 12224455555544
Q ss_pred -HHHHHHHhhcC----CCCCCcccccccccCC----------CCCC--------CCCCCC-hhHHHHHHHHHHHHHHHHH
Q 008300 69 -LRNLLEEIKNN----PANVIGKIDHIKQAKQ----------PPGN--------KAFAED-PIDIQRKQKVKDAMIHAWS 124 (570)
Q Consensus 69 -~~~~~~~~~~~----~~~~~~~~~~~~~~~~----------~~~~--------~~~~~~-~~~~~r~~~Vk~aF~haw~ 124 (570)
|++..+.+... ..+.++....+-|.++ ||.+ ...+.+ ....+||++||+||+|||+
T Consensus 109 ~L~~ak~~~~~~~~~~~~~n~~~~~k~~~~s~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~rrekVkemm~hAw~ 188 (625)
T KOG2204|consen 109 RLNKAKEVLPFILRSFDTPNRIPIKKPFQKSDLRNRFPDRTVPSGQLTPALAFESLDPEDRNKYRERREKVKEMMKHAWN 188 (625)
T ss_pred HHHhhhhccccccccccCcccccccccccchhhhhcCCCcccCCccCCccccccCcCccchhHHHHHHHHHHHHHHHHHH
Confidence 33322222211 1111222222222111 1111 111112 3445899999999999999
Q ss_pred HhHhhccCchhhhH--------------------------HHHhcCCCCCChhHHHHHHHHHHhhcCCC-CCccccccch
Q 008300 125 SYEKYAWGQDELQL--------------------------LYSMCLFWRISDYSFSSEFMWIANSLDFN-KSYDASVFET 177 (570)
Q Consensus 125 ~Y~k~Awg~DEL~P--------------------------L~IMgl~~~~~~eEF~~A~~~V~~~ldF~-~~~~VsvFEt 177 (570)
+|++||||+|||+| |||||| ++||++|++||+.+++|+ ++.++|||||
T Consensus 189 ~Yk~yawg~neLrp~sk~g~s~~ifG~~~~GATIvDslDTlyim~l-----~~e~qEar~wi~~~~~~~~v~~~~SvFE~ 263 (625)
T KOG2204|consen 189 NYKKYAWGKNELRPSSKQGHSSSIFGAHLKGATIVDSLDTLYIMGL-----KEEFQEARDWIAYNLDFKTVPIELSVFET 263 (625)
T ss_pred hhhhhcccccccCccccCCccccccccCcCCchHHHhhhHHHHHHH-----HHHHHHHHHHHHhhcccccccchhheeee
Confidence 99999999999999 999999 999999999999999998 8999999999
Q ss_pred hhhhccccceeeccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCC-CCccccccccchhhHHHHH
Q 008300 178 TIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTG-GESILADSGTEQLELIALS 256 (570)
Q Consensus 178 tIRvLGGLLSAY~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~-~~s~lAe~GSl~LEF~~LS 256 (570)
|||++|||||||.||||+++++||+++||+|||||+||||||+..||.++|...+.+|.. |.|++||.||++|||.+||
T Consensus 264 NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ksG~~~n~~wasgg~SILaE~gtlhlef~~LS 343 (625)
T KOG2204|consen 264 NIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKSGDADNYGWASGGSSILAEFGTLHLEFSYLS 343 (625)
T ss_pred eeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhccccCccCCcccccCcchHhhhcCceeeehHHhh
Confidence 999999999999999999999999999999999999999999999999999999999985 5889999999999999999
Q ss_pred HHhCCchHHHHHHHHHHHHhhcCCCCCCcceEecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcccccHHHHH
Q 008300 257 QRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYSRDMWE 336 (570)
Q Consensus 257 ~lTGd~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfYEYLLK~~iL~g~~d~~~~~~~~~y~ 336 (570)
++||||+|.+++++|.+.|.+..++.||+|++|||+||.|.+.+.++||.+|||||||+|.|+++|++| ..+ ++||.
T Consensus 344 ~ltg~P~~~ekv~~IRk~l~k~ekP~GLypnYinP~sg~wgq~~tslg~lgDSfyeyllK~wl~s~kTd--~ea-k~my~ 420 (625)
T KOG2204|consen 344 KLTGNPTFAEKVVKIRKVLNKSEKPHGLYPNYINPSSGEWGQHHTSLGALGDSFYEYLLKAWLQSDKTD--CEA-KGMYE 420 (625)
T ss_pred hccCCchHHHHHHHHHHHHHhhcCCCCCCcccccCCCCchhhHHhHHhhhhhhHHHHHHHHHhhcCCcc--hHH-HHhHH
Confidence 999999999999999999999998999999999999999999999999999999999999999999999 889 99999
Q ss_pred HHHHHHHHhh-cccCCCCCeeeeccCCCcccccccccccccchhhhhhcCCCCCC-CchHHHHHHHHHHHHHHHhhhcCC
Q 008300 337 TSMKGLLSLV-RRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPG-DSEKFLSLAEELAWTCYNFYQSTP 414 (570)
Q Consensus 337 ~A~~~i~~ll-~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLG~~~~~~~-~~~~~l~lA~~L~~tC~~~y~~t~ 414 (570)
+||.+|.++| +++++++++|+++++++++.++|+||+||.|||+|||+...+.+ ....++++|.++++||++.|.+++
T Consensus 421 ~am~Ai~~~li~~S~~s~ltyi~e~~~g~lehKm~hlacf~gGm~algA~~~~~~~~~~~y~el~~eia~TchesY~rt~ 500 (625)
T KOG2204|consen 421 DAMIAIEKYLIFKSDGSGLTYISEWNGGGLEHKMGHLACFAGGMFALGAIKGDTVGSSKHYLELGGEIATTCHESYTRTT 500 (625)
T ss_pred HHHHHHHhhheeccCCCCeEEEEecCCCchhhhhchhhcccccceeeccccCCCcchhHHHHHHhHHHHHHHHHHHhccc
Confidence 9999999954 56666799999999999999999999999999999999876544 678899999999999999999999
Q ss_pred CCccceeEeecCCCccc---cccCCCCCchhHHHHHHhHHhhcCCchHHHHHHHHHHHHHHhcccCcCccccccCCC--C
Q 008300 415 TKLAGENYFFRDGQDMS---VGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNT--G 489 (570)
Q Consensus 415 tGl~PE~~~f~~~~~~~---~~~~~y~LRPE~IESlfyLyR~TgD~~Yre~gW~if~ai~~~~r~~~Gya~i~dV~~--~ 489 (570)
|+++||.|.|+.+.+.. ..+.+|+||||+|||+|||||+|||++||+|||+.||+||++||+..||+||+||.. +
T Consensus 501 T~lgpesf~fn~~~ea~~~r~~EsyyILrpEviEs~fYlwRlT~d~kyR~wgweavqalek~cr~~~G~~glkdvY~~~~ 580 (625)
T KOG2204|consen 501 TKLGPESFWFNHGVEAFAVRKVESYYILRPEVIESYFYLWRLTGDQKYRSWGWEAVQALEKYCRVAKGYSGLKDVYESGP 580 (625)
T ss_pred cccChhhhcccCccchhhhhcccceeecCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHhcccccchhhhhHhhhCCC
Confidence 99999999999887633 378999999999999999999999999999999999999999999999999999976 4
Q ss_pred CCCCCcchHHHHHHHHHHHHhcCCCCccCCCCeeeccCCCccccc
Q 008300 490 DKDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKIV 534 (570)
Q Consensus 490 ~~~D~meSFflaETLKYLYLLFsd~~~isLd~~VFnTEaHPl~i~ 534 (570)
..+|.|+|||||||||||||||||++.+|||+||||||||||||.
T Consensus 581 ~~ddvqqSFflAEtLKYlyLlFSdddllsLD~wVFNteAHplpi~ 625 (625)
T KOG2204|consen 581 KVDDVQQSFFLAETLKYLYLLFSDDDLLSLDKWVFNTEAHPLPIK 625 (625)
T ss_pred cccchHHHHHHHHHHHHHhheecCCCcccHHHhhhccCCcccCCC
Confidence 579999999999999999999999999999999999999999973
No 4
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=100.00 E-value=1.1e-128 Score=1050.69 Aligned_cols=403 Identities=53% Similarity=0.895 Sum_probs=352.6
Q ss_pred HHHHHHHHhHhhccCchhhhH----------------------HHHhcCCCCCChhHHHHHHHHHHhhcCCCCCc-cccc
Q 008300 118 AMIHAWSSYEKYAWGQDELQL----------------------LYSMCLFWRISDYSFSSEFMWIANSLDFNKSY-DASV 174 (570)
Q Consensus 118 aF~haw~~Y~k~Awg~DEL~P----------------------L~IMgl~~~~~~eEF~~A~~~V~~~ldF~~~~-~Vsv 174 (570)
||+|||++|++||||||||+| |+|||+ ++||++|++||.++++|+++. .|||
T Consensus 1 ~f~~a~~~Y~~~A~g~Del~P~s~~~~~~~~g~~~TlvDSLdTL~imgl-----~~ef~~a~~~v~~~~~f~~~~~~vs~ 75 (452)
T PF01532_consen 1 MFRHAWNGYKKYAWGHDELRPLSGSGSDSFGGWGATLVDSLDTLYIMGL-----KDEFNEAVDWVSNNLDFDQDDSTVSV 75 (452)
T ss_dssp HHHHHHHHHHHHTTTSSEEETTTTEEE-SSTTS-HHHHHHHHHHHHHTH-----HHHHHHHHHHHHHC--TTSSSSEEEH
T ss_pred ChhHHHHHHHHhcCCccccccccCCCCCccccccceeeeeccceeecCC-----HHHHHHHHHHHHhhcCcCccceeech
Confidence 899999999999999999999 999999 999999999999889999988 7999
Q ss_pred cchhhhhccccceeeccC--CChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhH
Q 008300 175 FETTIRVVGGLLSAYDLS--GDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLEL 252 (570)
Q Consensus 175 FEttIRvLGGLLSAY~LS--gd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF 252 (570)
||||||+||||||||+|| +|++||+||+||||+|+||||||||||+++||++++... +|+++.+++||+||++|||
T Consensus 76 fEt~iR~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~~--~~~~~~~~la~~gs~~lEf 153 (452)
T PF01532_consen 76 FETTIRVLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGKN--RWPGGESSLAEAGSLQLEF 153 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEEE--TTCCGEEEHHHHCSSHHHH
T ss_pred HHhhhHhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccCCCccccceeeecccCCC--CCCCCcccccccccceech
Confidence 999999999999999999 999999999999999999999999999999999775543 5666778999999999999
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHhh--cC-CCCCCcceEecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCccc
Q 008300 253 IALSQRTGDPKYRQKAEKVIVELNK--TF-PADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKP 329 (570)
Q Consensus 253 ~~LS~lTGd~kY~~~a~~i~~~L~~--~~-~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfYEYLLK~~iL~g~~d~~~~ 329 (570)
.+||++|||+||+++|+++++.|++ .+ +.+||+|+.||+.+|+|++..+++||++|||||||+|+|+|+|+.+ +.
T Consensus 154 ~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d--~~ 231 (452)
T PF01532_consen 154 TRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTD--EQ 231 (452)
T ss_dssp HHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTT--HH
T ss_pred hHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccc--hH
Confidence 9999999999999999999999999 33 4799999999999999999999999999999999999999999888 88
Q ss_pred ccHHHHHHHHHHHHHhhccc--CCC--CCeeeeccC---CCcccccccccccccchhhhhhcCCCCCCCchHHHHHHHHH
Q 008300 330 YSRDMWETSMKGLLSLVRRS--TPS--SFTYICEKN---GDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEEL 402 (570)
Q Consensus 330 ~~~~~y~~A~~~i~~ll~~~--~~~--~~~~v~~~~---g~~~~~~m~hLsCF~pGmlaLG~~~~~~~~~~~~l~lA~~L 402 (570)
| ++||++|+++|+++|... .|. ++.|+++.. ++...++|+||+||+|||++||++.++ .++++++|++|
T Consensus 232 ~-~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~~---~~~~~~~A~~l 307 (452)
T PF01532_consen 232 Y-RDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLFN---DEGDLELAEEL 307 (452)
T ss_dssp H-HHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcccC---chhHHHHHHHH
Confidence 9 999999999999976543 455 789999986 567899999999999999999998874 48999999999
Q ss_pred HHHHHHhhhcCCCCccceeEeecCC------------CccccccCCCCCchhHHHHHHhHHhhcCCchHHHHHHHHHHHH
Q 008300 403 AWTCYNFYQSTPTKLAGENYFFRDG------------QDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAF 470 (570)
Q Consensus 403 ~~tC~~~y~~t~tGl~PE~~~f~~~------------~~~~~~~~~y~LRPE~IESlfyLyR~TgD~~Yre~gW~if~ai 470 (570)
+++|+++|+.+|||++||++.|... ..+.+.+++|+||||+|||+|||||+||||+||||||+||++|
T Consensus 308 ~~~C~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~if~ai 387 (452)
T PF01532_consen 308 TETCYWLYKSTPTGLGPEIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDPKYREWGWDIFQAI 387 (452)
T ss_dssp HHHHHHHHHTSSSSS--SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCceEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEcCCchHHHHHHHHHHHH
Confidence 9999999999999999999999962 2234688999999999999999999999999999999999999
Q ss_pred HHhcccCcCccccccCC--CCCCCCCcchHHHHHHHHHHHHhcCCCCccCCCCeeeccCCCcccc
Q 008300 471 EKNSRIESGYVGLKDVN--TGDKDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKI 533 (570)
Q Consensus 471 ~~~~r~~~Gya~i~dV~--~~~~~D~meSFflaETLKYLYLLFsd~~~isLd~~VFnTEaHPl~i 533 (570)
+++||++|||++|+||+ ++..+|+|||||||||||||||||||++.++||+||||||||||||
T Consensus 388 ~k~~r~~~G~a~i~dv~~~~~~~~D~meSf~laETlKYlYLlFsd~~~~~ld~~VfnTeaHpl~i 452 (452)
T PF01532_consen 388 EKYCRTECGYAGIKDVTSDPPQKDDRMESFFLAETLKYLYLLFSDPDVISLDEYVFNTEAHPLRI 452 (452)
T ss_dssp HHHTEETTEE--BSETTSSSSCBBS-B-CHHHHTHHHHHHHHTSSTTTTSTTSEEE-TTS-EEE-
T ss_pred HHhcccceehhhhcccCcCCcccCCCccceehHhhhHHHHhhcCCcccCCCCCEEECCCCCccCC
Confidence 99999999999999998 5667999999999999999999999999999999999999999996
No 5
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.1e-111 Score=891.37 Aligned_cols=401 Identities=32% Similarity=0.474 Sum_probs=378.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhccCchhhhH---------------------------HHHhcCCCCCChhHHHHHHHH
Q 008300 107 IDIQRKQKVKDAMIHAWSSYEKYAWGQDELQL---------------------------LYSMCLFWRISDYSFSSEFMW 159 (570)
Q Consensus 107 ~~~~r~~~Vk~aF~haw~~Y~k~Awg~DEL~P---------------------------L~IMgl~~~~~~eEF~~A~~~ 159 (570)
..++.|++||+||.|||++||+||+|+|||+| |.|||. .+||++||+|
T Consensus 29 ~~~~~Re~vr~MFyhayDnYm~hAFP~DEL~PltC~g~~~~~~D~~G~ysLtLIDaLdTLailGn-----~~eF~raV~l 103 (622)
T KOG2429|consen 29 KKKQYREEVREMFYHAYDNYMEHAFPYDELKPLTCVGRGPGVNDTLGSYSLTLIDALDTLAILGN-----RTEFQRAVRL 103 (622)
T ss_pred cHHHHHHHHHHHHHHhhhhHhhccCCccccCcceecCCCCCccccccccchhhHHHhhHHHHhCC-----hHHHHHHHHH
Confidence 34899999999999999999999999999999 999999 9999999999
Q ss_pred HHhhcCCCCCccccccchhhhhccccceeeccCC------------ChHHHHHHHHHHHHHhhcccCCCCCCcceeecCC
Q 008300 160 IANSLDFNKSYDASVFETTIRVVGGLLSAYDLSG------------DKVFLEKARDIADRLLPAWNTRTGIPYNVINLAH 227 (570)
Q Consensus 160 V~~~ldF~~~~~VsvFEttIRvLGGLLSAY~LSg------------d~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~ 227 (570)
|.++++|++|.+||||||||||||||||||.++. |..||..|+|+|+||||||+|||||||++||++.
T Consensus 104 v~~~~~Fd~d~~VqVFEttIRVlGGLLSAHllA~~~~~~~~~~~~y~g~LLrLA~dlA~RLLPAF~T~TGiPy~~vNLk~ 183 (622)
T KOG2429|consen 104 VIETVSFDIDSTVQVFETTIRVLGGLLSAHLLAKKDPVGVFLGPDYDGELLRLAEDLARRLLPAFETPTGIPYGRVNLKY 183 (622)
T ss_pred HHhhCCcccCCeeEEEEEehhhhhhHHHHHHhhccCccCccccCCCCchHHHHHHHHHHhhcccccCCCCCCcceeehhc
Confidence 9999999999999999999999999999999993 5679999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCCCCCCcceEecCCCCCCCCCeeeecccC
Q 008300 228 GNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMG 307 (570)
Q Consensus 228 g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~ 307 (570)
|++.++. .++|+|.+||+.|||+.||+|||||+|++.|+++.+.+|+.++..||+|++||+.||+|+....++||+.
T Consensus 184 GV~~~Et---~~tctAg~gslllEFg~LSrLTGD~~fE~vA~~A~~~lW~~RS~igLlGn~idV~tG~W~~~~sGIGAgi 260 (622)
T KOG2429|consen 184 GVDKGET---TETCTAGAGSLLLEFGTLSRLTGDPKFEKVARRALDALWSLRSGIGLLGNHIDVQTGEWTAPDSGIGAGI 260 (622)
T ss_pred CCCCCCC---cceecccccceeeehhhhHHhhCCcHHHHHHHHHHHHHHhhcCCCCcccceeeccccceeccccccccch
Confidence 9998876 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcccCCCCCeeeeccCCCcccccccccccccchhhhhhcCCC
Q 008300 308 DSFYEYLLKVWIQGNKTSAVKPYSRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGY 387 (570)
Q Consensus 308 DSfYEYLLK~~iL~g~~d~~~~~~~~~y~~A~~~i~~ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLG~~~~ 387 (570)
|||||||+|.|||+|+.+ + .+||.+|.++|++++++. +.+..|.+.+|....+++++|++||||+++|.|
T Consensus 261 DSfyEYllK~yILfgd~e----~-lemf~ea~~ai~~y~r~~--~wY~~V~m~~G~v~~p~~dSLqAfwpGlqvLaG--- 330 (622)
T KOG2429|consen 261 DSFYEYLLKGYILFGDPE----L-LEMFNEAYEAIQKYTRKG--PWYVNVNMDSGSVSLPWFDSLQAFWPGLQVLAG--- 330 (622)
T ss_pred HHHHHHHHHHheecCCHH----H-HHHHHHHHHHHHHHhhcC--CeEEEEecCCCceehHHHhhHHhhccchhhhhc---
Confidence 999999999999999876 5 799999999999998864 478889999999899999999999999999987
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhhcCCCCccceeEeecCCCccccccCCCCCchhHHHHHHhHHhhcCCchHHHHHHHHH
Q 008300 388 GPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIF 467 (570)
Q Consensus 388 ~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~TgD~~Yre~gW~if 467 (570)
+++.|...+-..+.+|+. .|..||.|++..+.. .....+|+||||.|||.|||||+|+||.|++.|-+|.
T Consensus 331 -------Dvd~A~~~h~~y~~vwkk--yG~lPEryN~~~~~~-~~~~~~YPLRPElvEStyyLYrATkdp~yL~vG~~~l 400 (622)
T KOG2429|consen 331 -------DVDDAIRTHLMYFSVWKK--YGFLPERYNLATQEP-PPKREGYPLRPELVESTYYLYRATKDPFYLHVGEDML 400 (622)
T ss_pred -------chHHHHHHHHHHHHHHHH--cCCCcccccccCCCC-CCCcccCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 456677888888999985 799999999998653 5688899999999999999999999999999999999
Q ss_pred HHHHHhcccCcCccccccCCCCCCCCCcchHHHHHHHHHHHHhcCCCCcc--CCC-CeeeccCCCcccccc
Q 008300 468 QAFEKNSRIESGYVGLKDVNTGDKDNMMQSFFLAETLKYLYLLFSPTTVI--SLD-EWVFNTEAHPLKIVT 535 (570)
Q Consensus 468 ~ai~~~~r~~~Gya~i~dV~~~~~~D~meSFflaETLKYLYLLFsd~~~i--sLd-~~VFnTEaHPl~i~~ 535 (570)
++||+++|++||||+|+||.+...+|+|||||||||+|||||||+|++.| +-+ .++|+|||||++|.+
T Consensus 401 ~sLe~~~k~~CGfAti~nV~~~~ledrMESFFLaET~KYLYLLFD~~n~ih~~g~~~~ifsTEgh~~~v~~ 471 (622)
T KOG2429|consen 401 KSLEKYTKVKCGFATIRNVITHSLEDRMESFFLAETLKYLYLLFDDDNPIHNSGSDSVIFSTEGHLFPVTQ 471 (622)
T ss_pred HHHHHhccCCccceeeeehhhcchHHHHHHHHHHHHHhHHheeecCCchhhccCCceeEEeeCCcceeecc
Confidence 99999999999999999999999999999999999999999999999998 333 489999999999965
No 6
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.5e-84 Score=654.22 Aligned_cols=398 Identities=30% Similarity=0.476 Sum_probs=351.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccCchhhhH----------------------------------HHHhcCCCCCChhHHH
Q 008300 109 IQRKQKVKDAMIHAWSSYEKYAWGQDELQL----------------------------------LYSMCLFWRISDYSFS 154 (570)
Q Consensus 109 ~~r~~~Vk~aF~haw~~Y~k~Awg~DEL~P----------------------------------L~IMgl~~~~~~eEF~ 154 (570)
++..+++-+||.|+|++||.||+|.|||.| |.+|+. .+||+
T Consensus 7 kkl~~e~~dmf~h~y~nyme~a~padelmplsckgrirg~~psrgdvddalgkfsltlidsldtlvvln~-----~~efe 81 (587)
T KOG2430|consen 7 KKLGKEALDMFDHAYGNYMEHAFPADELMPLSCKGRIRGQEPSRGDVDDALGKFSLTLIDSLDTLVVLNE-----LDEFE 81 (587)
T ss_pred HHHHHHHHHHHHHhhhhhhhccCchhhcccccccceecCcCCCCCchhhhhcceeeeeeccccceeeccc-----hHHHH
Confidence 445688999999999999999999999999 899999 99999
Q ss_pred HHHHHHHhhcCCCCCccccccchhhhhccccceeeccCC-------------ChHHHHHHHHHHHHHhhcccCCCCCCcc
Q 008300 155 SEFMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSG-------------DKVFLEKARDIADRLLPAWNTRTGIPYN 221 (570)
Q Consensus 155 ~A~~~V~~~ldF~~~~~VsvFEttIRvLGGLLSAY~LSg-------------d~~lL~KA~dLadrLLpAFdTptGiP~~ 221 (570)
+|++-|.++++|+.|.-||||||+||||||||+||.|.. |..||.+|++||.+|||||+|.+|+|++
T Consensus 82 ~ai~~vik~v~~dnd~vvsvfetnirvlggli~~h~la~llk~e~~e~lq~y~dellkmakelg~kllpafnttsglp~~ 161 (587)
T KOG2430|consen 82 DAIDKVIKDVNFDNDHVVSVFETNIRVLGGLIGAHSLAELLKEEKGERLQTYDDELLKMAKELGNKLLPAFNTTSGLPFP 161 (587)
T ss_pred HHHHHHHHhccCCCCeEEEEeecccHhhhccchHHHHHHHHHHhccchhhhhhHHHHHHHHHHhhhhccccccCCCCCCc
Confidence 999999999999999999999999999999999998874 7789999999999999999999999999
Q ss_pred eeecCCCCCCCCCCC--CCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhc-CCCCCCcceEecCCCCCCCC
Q 008300 222 VINLAHGNPHNPSWT--GGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKT-FPADGLLPIYISPDRGTPSY 298 (570)
Q Consensus 222 ~vNl~~g~~~~~~~~--~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~-~~~~GL~p~~id~~tg~~~~ 298 (570)
+||++.|.-..+.-. ..++|+|.+||++|||..||++||+|.|+++|+++++.||.. .....|++..||..+|.|+.
T Consensus 162 rinlk~gi~~pea~~~~e~dtctac~gtlilefaals~~tg~~ifee~arkaldflwekr~rss~l~g~~inihsgdw~r 241 (587)
T KOG2430|consen 162 RINLKFGIQDPEAHLGREKDTCTACAGTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTR 241 (587)
T ss_pred ccchhccccChhhhhcccccchhhccchhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcccccccceeEEeccCccee
Confidence 999999986544322 357899999999999999999999999999999999999984 45678999999999999999
Q ss_pred CeeeecccCchHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcccCCCCCeeeeccCCC---cccccccccccc
Q 008300 299 STITFGAMGDSFYEYLLKVWIQGNKTSAVKPYSRDMWETSMKGLLSLVRRSTPSSFTYICEKNGD---SLIDKMDELACF 375 (570)
Q Consensus 299 ~~~t~Ga~~DSfYEYLLK~~iL~g~~d~~~~~~~~~y~~A~~~i~~ll~~~~~~~~~~v~~~~g~---~~~~~m~hLsCF 375 (570)
...++||+.|||||||||.|+|.|+.. | .+.|.+-+++|++++.+++ .|++-.-+. ..+..||.|-+|
T Consensus 242 kdsgigagidsyyey~lkayillgdds----f-ldrfn~hydai~ryi~k~p----i~ldvhihkp~l~ar~~mdallaf 312 (587)
T KOG2430|consen 242 KDSGIGAGIDSYYEYLLKAYILLGDDS----F-LDRFNKHYDAIKRYINKGP----IFLDVHIHKPMLAARGFMDALLAF 312 (587)
T ss_pred cccCcCcchHHHHHHHHHHhheeccHH----H-HHHHHHHHHHHHHHhcCCC----eEEEEecccchhhHhhHHHHHHHh
Confidence 999999999999999999999999865 6 7888888999998875432 244332222 234689999999
Q ss_pred cchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhhcCCCCccceeEeecCCCccccccCCCCCchhHHHHHHhHHhhcC
Q 008300 376 APGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTG 455 (570)
Q Consensus 376 ~pGmlaLG~~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~Tg 455 (570)
+||+++|-|. +.-|.+..+..|+.-+. ....||.|.-+ +.+-=...++|||.+||.|+|||+||
T Consensus 313 ~pglqvlkgd----------ik~aie~heml~qvikk--h~flpeaft~d----f~vhwaehpirpefaestyflykat~ 376 (587)
T KOG2430|consen 313 FPGLQVLKGD----------IKEAIEMHEMLFQVIKK--HKFLPEAFTHD----FQVHWAEHPIRPEFAESTYFLYKATG 376 (587)
T ss_pred Ccchhhhccc----------cHHHHHHHHHHHHHHHH--cccChHhhccc----ceeecccCCCChhhhhhheeeecccC
Confidence 9999999863 34466777778877764 57899987633 23333467999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHhcccCcCccccccCCCCCCCCCcchHHHHHHHHHHHHhcCCCCcc--CCCCeeeccCCCcccc
Q 008300 456 NKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNTGDKDNMMQSFFLAETLKYLYLLFSPTTVI--SLDEWVFNTEAHPLKI 533 (570)
Q Consensus 456 D~~Yre~gW~if~ai~~~~r~~~Gya~i~dV~~~~~~D~meSFflaETLKYLYLLFsd~~~i--sLd~~VFnTEaHPl~i 533 (570)
||.|.+.|..|..+|+|+.|++|||++++||.++..+|+|+||||||++|||||||.|+..+ +.|+|||+||||.||.
T Consensus 377 dp~yl~v~k~iidninkyakvpcgfaalkdirt~~~ed~mdsf~lae~fkylylifad~ediifd~d~yi~tteah~lpl 456 (587)
T KOG2430|consen 377 DPHYLEVAKQIIDNINKYAKVPCGFAALKDIRTGSHEDQMDSFFLAEMFKYLYLIFADKEDIIFDIDDYIFTTEAHFLPL 456 (587)
T ss_pred CchHHHHHHHHHHHHhhheeCCchHHHHHHHhhcchHHHHHHHHHHHHHHHHHheecCHHHceechhHheEeecceeeee
Confidence 99999999999999999999999999999999999999999999999999999999998654 8899999999999998
Q ss_pred ccC
Q 008300 534 VTQ 536 (570)
Q Consensus 534 ~~~ 536 (570)
+-.
T Consensus 457 ~i~ 459 (587)
T KOG2430|consen 457 SIG 459 (587)
T ss_pred eec
Confidence 744
No 7
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.51 E-value=9.9e-06 Score=85.83 Aligned_cols=274 Identities=16% Similarity=0.108 Sum_probs=163.0
Q ss_pred hhhhhccccceeeccCCChHHHHHHHHHHHHHhhcccCCC-CCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHH
Q 008300 177 TTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRT-GIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIAL 255 (570)
Q Consensus 177 ttIRvLGGLLSAY~LSgd~~lL~KA~dLadrLLpAFdTpt-GiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~L 255 (570)
..-|.|-+|-.||.+++++..|+.|+...+.|..-+-.+. |-=+..++ ..|.+..+. ..+=+.+-+..=+..+
T Consensus 54 ~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~-~~g~~~~~~-----~~l~~~a~~l~ala~~ 127 (384)
T cd00249 54 LQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALD-QDGRPVDAT-----KDLYSHAFALLAAAQA 127 (384)
T ss_pred EecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEc-CCCCCcccc-----cchHHHHHHHHHHHHH
Confidence 4668889999999999999999999999999998664443 43233332 234433221 1123334445557889
Q ss_pred HHHhCCchHHHHHHHHHHHHhhcC-CCCCCcceEecCCCCCCCCCeeeecccCch--HHHHHHHHHHhcCCCCCcccccH
Q 008300 256 SQRTGDPKYRQKAEKVIVELNKTF-PADGLLPIYISPDRGTPSYSTITFGAMGDS--FYEYLLKVWIQGNKTSAVKPYSR 332 (570)
Q Consensus 256 S~lTGd~kY~~~a~~i~~~L~~~~-~~~GL~p~~id~~tg~~~~~~~t~Ga~~DS--fYEYLLK~~iL~g~~d~~~~~~~ 332 (570)
.+.|||+.|.+.|+++++.+.+.. +.+|.+-...+++. ... -+ ..+- ..|-|+..+-++|+.+ | .
T Consensus 128 ~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~-~~~-----~~-~~~~~h~~~all~l~~~tgd~~----~-~ 195 (384)
T cd00249 128 AKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGT-PPY-----RG-SNPHMHLLEAMLAAYEATGEQK----Y-L 195 (384)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCC-CCC-----CC-CChhHHHHHHHHHHHHHhCCHH----H-H
Confidence 999999999999999999999854 33454433334331 111 11 2222 2588899998888644 5 5
Q ss_pred HHHHHHHHHHHHhhcccCCCCCeeeeccC--------CCcccccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHH
Q 008300 333 DMWETSMKGLLSLVRRSTPSSFTYICEKN--------GDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAW 404 (570)
Q Consensus 333 ~~y~~A~~~i~~ll~~~~~~~~~~v~~~~--------g~~~~~~m~hLsCF~pGmlaLG~~~~~~~~~~~~l~lA~~L~~ 404 (570)
++-.+.++.+.+.+.....+.+....... +....+ .|..=.+=+++.|.... ..+++++.|+++.+
T Consensus 196 ~~A~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~P--gh~~e~a~~ll~l~~~~----~~~~~~~~a~~~~~ 269 (384)
T cd00249 196 DRADEIADLILDRFIDAESGVVREHFDEDWNPYNGDKGRHQEP--GHQFEWAWLLLRIASRS----GQAWLIEKARRLFD 269 (384)
T ss_pred HHHHHHHHHHHHHhcCcccCeEEEEECCCCCCCcCcCCCcCCC--chHHHHHHHHHHHHhhc----CCHHHHHHHHHHHH
Confidence 66666666666654432222221111100 111111 11111111333343322 24679999999888
Q ss_pred HHHHhhhcCCCCccceeEeecCCCccccccCCCCCc--hhHHHHHHhHHhhcCCchHHHHHHHHHHHHHHhcccC
Q 008300 405 TCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILR--PETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIE 477 (570)
Q Consensus 405 tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~LR--PE~IESlfyLyR~TgD~~Yre~gW~if~ai~~~~r~~ 477 (570)
.+.+..-...+|...+. +.+... .+.+..-..- -|.+..+..+|++|||++|.+++-+++..+.++...+
T Consensus 270 ~~~~~~~d~~~G~~~~~--~~~~~~-~~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~~d~ 341 (384)
T cd00249 270 LALALGWDPERGGLYYS--FLDDGG-LLEDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWRHFIDP 341 (384)
T ss_pred HHHHhCcCccCCCEEEe--eECCCC-CcccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 76654433334432221 222211 1122222233 3888889999999999999999999999999887754
No 8
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=98.35 E-value=6.9e-06 Score=90.24 Aligned_cols=332 Identities=20% Similarity=0.210 Sum_probs=198.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhccCchhhhH-----HHHhcCC-CCCChhHHHHHHHHHHhhcCCCCC----ccccccc
Q 008300 107 IDIQRKQKVKDAMIHAWSSYEKYAWGQDELQL-----LYSMCLF-WRISDYSFSSEFMWIANSLDFNKS----YDASVFE 176 (570)
Q Consensus 107 ~~~~r~~~Vk~aF~haw~~Y~k~Awg~DEL~P-----L~IMgl~-~~~~~eEF~~A~~~V~~~ldF~~~----~~VsvFE 176 (570)
.+..|..++...|...|..-. -|.+.--.+| +.|-.+- -.+-+..+++.++-++ ++|-.. ......+
T Consensus 13 p~~lr~~~~~~~~l~~~~~~~-Lc~~a~f~~ps~~~~~~~~~~~~~~~~~~~v~d~~n~~~--~~~~~~~~~~~~~~~p~ 89 (625)
T KOG2204|consen 13 PDVLRLKQIFLIFLGSSFQET-LCLGANFRLPSSSPLLLIDLLDSSYLCTPLVQDVVNRII--FDFPAPPLAMEVIDAPD 89 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-hhhhheeeCCCCCchhheeeccchhhhhhHHHhcccccc--ccCCCcccccccccccc
Confidence 467788888888888876543 3444433333 2232220 0000122333333222 344332 1245688
Q ss_pred hhhhhccccceeeccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHH
Q 008300 177 TTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALS 256 (570)
Q Consensus 177 ttIRvLGGLLSAY~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS 256 (570)
.+-|+|-|++|+|...-++. |++|++.+++++..|++|+.+|....-.+.... ++++.+.......++ .|-|..++
T Consensus 90 ~~~~~le~~~s~~~~~~~r~-L~~ak~~~~~~~~~~~~~n~~~~~k~~~~s~l~--~~~~~~~~~~~~~~~-~~~~~~~d 165 (625)
T KOG2204|consen 90 ITTRVLEGLLSAYEEEMDRR-LNKAKEVLPFILRSFDTPNRIPIKKPFQKSDLR--NRFPDRTVPSGQLTP-ALAFESLD 165 (625)
T ss_pred cchhhhhhhHHHhhHHHHHH-HHhhhhccccccccccCcccccccccccchhhh--hcCCCcccCCccCCc-cccccCcC
Confidence 89999999999999999998 999999999999999999999875432221111 111111122222333 67788999
Q ss_pred HHhCCchHHHHHHHH---HHHHhhcCCCCCCcceEecCCCCCCCCCeeeec--ccCchHHHHHHHHHHhcCCCCCccccc
Q 008300 257 QRTGDPKYRQKAEKV---IVELNKTFPADGLLPIYISPDRGTPSYSTITFG--AMGDSFYEYLLKVWIQGNKTSAVKPYS 331 (570)
Q Consensus 257 ~lTGd~kY~~~a~~i---~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~G--a~~DSfYEYLLK~~iL~g~~d~~~~~~ 331 (570)
+.+. .+|+++.++| |++-|+.......-++.++|.+++.. +...|| ..|-+--.-|--.||+. .
T Consensus 166 ~~~~-~~~~~rrekVkemm~hAw~~Yk~yawg~neLrp~sk~g~-s~~ifG~~~~GATIvDslDTlyim~--------l- 234 (625)
T KOG2204|consen 166 PEDR-NKYRERREKVKEMMKHAWNNYKKYAWGKNELRPSSKQGH-SSSIFGAHLKGATIVDSLDTLYIMG--------L- 234 (625)
T ss_pred ccch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccCccccCCc-cccccccCcCCchHHHhhhHHHHHH--------H-
Confidence 8887 7888776664 55666677778888999999998875 334555 33444444444445543 1
Q ss_pred HHHHHHHHHHHHHhhccc-CCCCCeeeeccCCCcccccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhh
Q 008300 332 RDMWETSMKGLLSLVRRS-TPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFY 410 (570)
Q Consensus 332 ~~~y~~A~~~i~~ll~~~-~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLG~~~~~~~~~~~~l~lA~~L~~tC~~~y 410 (570)
.+-|++|-+=|..-+-.. .+..+ .-++-=--|.+|++.+=+-..+ +-+++-|.+|.+-.--.+
T Consensus 235 ~~e~qEar~wi~~~~~~~~v~~~~------------SvFE~NirF~GGllsay~lsge----~~f~~kA~~igdkLLpAf 298 (625)
T KOG2204|consen 235 KEEFQEARDWIAYNLDFKTVPIEL------------SVFETNIRFVGGLLSAYALSGE----EMFLEKAPEIGDKLLPAF 298 (625)
T ss_pred HHHHHHHHHHHHhhcccccccchh------------heeeeeeeeehhhHHHhhhccc----HHHHHhhHHHHHHhhhcc
Confidence 455566666565422211 11111 1111123588999987664332 344444555554444444
Q ss_pred hcCCCCccceeEeecCCCccc---cccCCCCC------chhHHHHHHhHHhhcCCchHHHHHHHHHHHHHHhcccC
Q 008300 411 QSTPTKLAGENYFFRDGQDMS---VGTSWNIL------RPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIE 477 (570)
Q Consensus 411 ~~t~tGl~PE~~~f~~~~~~~---~~~~~y~L------RPE~IESlfyLyR~TgD~~Yre~gW~if~ai~~~~r~~ 477 (570)
.||||+.=-.++...|..-+ .....-+| -=| .-||=++||||.|++..-+|=+.+++.-+-.
T Consensus 299 -ntptGIp~~~vn~ksG~~~n~~wasgg~SILaE~gtlhle----f~~LS~ltg~P~~~ekv~~IRk~l~k~ekP~ 369 (625)
T KOG2204|consen 299 -NTPTGIPKALVNNKSGDADNYGWASGGSSILAEFGTLHLE----FSYLSKLTGNPTFAEKVVKIRKVLNKSEKPH 369 (625)
T ss_pred -cCCCCCchhhhccccCccCCcccccCcchHhhhcCceeee----hHHhhhccCCchHHHHHHHHHHHHHhhcCCC
Confidence 47999987777776653200 01101122 112 2478899999999999999999999987744
No 9
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.21 E-value=0.00051 Score=72.86 Aligned_cols=247 Identities=15% Similarity=0.121 Sum_probs=149.2
Q ss_pred HHHHHHhh-cccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcC-C
Q 008300 203 DIADRLLP-AWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTF-P 280 (570)
Q Consensus 203 dLadrLLp-AFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~-~ 280 (570)
++.+.... ++|.++|--+..++. .|++.+.. ..+=..+-++.=|....+++|++.|.+.|+++++.|.+.. .
T Consensus 18 ~~~~fw~~~~~d~~~gg~~~~l~~-~g~~~~~~-----k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d 91 (384)
T cd00249 18 DLLPFWLEAGLDREAGGFFECLDR-DGQPFDTD-----RRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRD 91 (384)
T ss_pred HHHHHHHhcCCCCCCCCeEEEECC-CCCCCCCC-----CeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcC
Confidence 33444444 567777755555653 46554321 2233345566778889999999999999999999999943 3
Q ss_pred CC-CCcceEecCCCCCCCCCeeeecccCchHHHHHH------HHHHhcCCCCCcccccHHHHHHHHHHHHHhhcccCCCC
Q 008300 281 AD-GLLPIYISPDRGTPSYSTITFGAMGDSFYEYLL------KVWIQGNKTSAVKPYSRDMWETSMKGLLSLVRRSTPSS 353 (570)
Q Consensus 281 ~~-GL~p~~id~~tg~~~~~~~t~Ga~~DSfYEYLL------K~~iL~g~~d~~~~~~~~~y~~A~~~i~~ll~~~~~~~ 353 (570)
.. |-+-..++++ |++... +-.-|+|.. ..|-.+|+.+ + .+.=.+.++-+.+++. ...++
T Consensus 92 ~~~Gg~~~~~~~~-g~~~~~-------~~~l~~~a~~l~ala~~~~at~d~~----~-l~~A~~~~~~l~~~~~-~~~g~ 157 (384)
T cd00249 92 PDHGGWYFALDQD-GRPVDA-------TKDLYSHAFALLAAAQAAKVGGDPE----A-RALAEETIDLLERRFW-EDHPG 157 (384)
T ss_pred CCCCCEEEEEcCC-CCCccc-------ccchHHHHHHHHHHHHHHHhcCCHH----H-HHHHHHHHHHHHHHhc-cCCCc
Confidence 33 6665666544 343321 113555554 7777777644 4 5555666666766554 22222
Q ss_pred CeeeeccCCCcccccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhhcCCCCccceeEeecCCCccccc
Q 008300 354 FTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVG 433 (570)
Q Consensus 354 ~~~v~~~~g~~~~~~m~hLsCF~pGmlaLG~~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~ 433 (570)
+ |.....+....+.+......+-+++.+.... ..+++++.|+++++.+.......+.|..+|.+. .+......
T Consensus 158 ~-~~~~~~~~~~~~~~~~~~h~~~all~l~~~t----gd~~~~~~A~~l~~~~~~~~~~~~~G~~~e~~~--~~~~~~~~ 230 (384)
T cd00249 158 A-FDEADPGTPPYRGSNPHMHLLEAMLAAYEAT----GEQKYLDRADEIADLILDRFIDAESGVVREHFD--EDWNPYNG 230 (384)
T ss_pred c-cCCCCCCCCCCCCCChhHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHhcCcccCeEEEEEC--CCCCCCcC
Confidence 2 2111111111111222221122566666532 246899999999999998777777787776653 21110111
Q ss_pred cCCCCCch----hHHHHHHhHHhhcCCchHHHHHHHHHHHHHHhccc
Q 008300 434 TSWNILRP----ETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRI 476 (570)
Q Consensus 434 ~~~y~LRP----E~IESlfyLyR~TgD~~Yre~gW~if~ai~~~~r~ 476 (570)
+.....-| |.+-.+.-++++|||+.|++++-++++.+.++..-
T Consensus 231 ~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d 277 (384)
T cd00249 231 DKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWD 277 (384)
T ss_pred cCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcC
Confidence 11222224 67777777899999999999999999999998853
No 10
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00018 Score=81.65 Aligned_cols=171 Identities=19% Similarity=0.273 Sum_probs=106.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHhhccCchhhhH----HHHhcCC---CCCChhH-H---HHHHHHHHhhcCCC------
Q 008300 105 DPIDIQRKQKVKDAMIHAWSSYEKYAWGQDELQL----LYSMCLF---WRISDYS-F---SSEFMWIANSLDFN------ 167 (570)
Q Consensus 105 ~~~~~~r~~~Vk~aF~haw~~Y~k~Awg~DEL~P----L~IMgl~---~~~~~eE-F---~~A~~~V~~~ldF~------ 167 (570)
.+...++.+.+|+..+.++.+=. ...=-|-+-. |.|-+|. ..+.+.+ + +++.++|.+++.=+
T Consensus 378 ~~~~~~~l~~~r~kL~~~R~~R~-~P~~Ddkvlt~wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~ 456 (667)
T COG1331 378 IEEAEEKLERAREKLLAAREKRK-QPSRDDKVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRY 456 (667)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCC-CCCCCcceeeccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccchheee
Confidence 34456777788877776665421 1111111111 3333321 1111233 3 34446676655323
Q ss_pred CCcc---ccccchhhhhccccceeeccCCChHHHHHHHHHHHHHhhcccCCC-CCCcceeecCCCCCCCCCCCCCCcccc
Q 008300 168 KSYD---ASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRT-GIPYNVINLAHGNPHNPSWTGGESILA 243 (570)
Q Consensus 168 ~~~~---VsvFEttIRvLGGLLSAY~LSgd~~lL~KA~dLadrLLpAFdTpt-GiP~~~vNl~~g~~~~~~~~~~~s~lA 243 (570)
.++. +-.-|--..++.|||+.|+.++|..+|++|++|+|.++..|-.+. | -|..-.........+.-.....+.+
T Consensus 457 ~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~~gG-f~~t~~~~~~l~ir~~~~~D~a~~S 535 (667)
T COG1331 457 RGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADEAIADFWDDEGG-FYDTPSDSEDLLIRPKEPTDGATPS 535 (667)
T ss_pred ecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCCCCC-cccCCCcccccccCCCCCCCCCCCC
Confidence 2333 345788889999999999999999999999999999999887666 5 3322222222221121111233455
Q ss_pred ccccchhhHHHHHHHhCCchHHHHHHHHHHHHhh
Q 008300 244 DSGTEQLELIALSQRTGDPKYRQKAEKVIVELNK 277 (570)
Q Consensus 244 e~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~ 277 (570)
..+....-+.+||++|||.+|.++|+++.+.+..
T Consensus 536 ~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~ 569 (667)
T COG1331 536 GNAVAAQALLRLSLLTGDARYLEAAEDILQAFAG 569 (667)
T ss_pred HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Confidence 5667778899999999999999999999999887
No 11
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.34 E-value=0.002 Score=72.32 Aligned_cols=212 Identities=16% Similarity=0.149 Sum_probs=121.6
Q ss_pred hhhccccceeeccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHH
Q 008300 179 IRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQR 258 (570)
Q Consensus 179 IRvLGGLLSAY~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~l 258 (570)
-.++-||+.+|+.+|++.+|+-|+.+||.+....+..+--|. +.....|.|.+.+-+..|-++
T Consensus 128 ~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~~~~~-----------------~~~~~~~~~~i~~~l~~LY~~ 190 (520)
T PF07944_consen 128 GKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRLGPEPG-----------------QKMGYPEHGGINEALVRLYEI 190 (520)
T ss_pred hHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCCHHHh-----------------hcccccccchHHHHHHHHHHH
Confidence 457889999999999999999999999999443332111010 011123556667789999999
Q ss_pred hCCchHHHHHHHHHHHHhhcCCCCCCcceEecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcccccHHHHHHH
Q 008300 259 TGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYSRDMWETS 338 (570)
Q Consensus 259 TGd~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfYEYLLK~~iL~g~~d~~~~~~~~~y~~A 338 (570)
|||++|.+.|++..+.-.... .+ .-...|...+......++-.-..-..|+-+...|.++|+.+ | ++.=...
T Consensus 191 Tgd~~yL~lA~~f~~~~~~~~--~~-~~~~~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~----~-~~a~~~~ 262 (520)
T PF07944_consen 191 TGDERYLDLAEYFVDQRGFDP--YD-LAYGQDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEE----Y-LDAAENF 262 (520)
T ss_pred hCCHHHHHHHHHHHHHhCCCC--Cc-hhhcCccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHH----H-HHHHHHH
Confidence 999999999998887543211 00 01111222222222233333334467788889999999755 3 3333344
Q ss_pred HHHHHH-hhcccCCCCCeeeeccCC--Cccc-ccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhhcCC
Q 008300 339 MKGLLS-LVRRSTPSSFTYICEKNG--DSLI-DKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTP 414 (570)
Q Consensus 339 ~~~i~~-ll~~~~~~~~~~v~~~~g--~~~~-~~m~hLsCF~pGmlaLG~~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~ 414 (570)
.+.|.+ ++.-....+-..-+|.-+ ..+. ......+|-.-+|+-+..+.+.....+++.+..+.. +|+..+
T Consensus 263 w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~~~tgd~~yaD~~Er~------lyN~~l 336 (520)
T PF07944_consen 263 WDNVVRHHMYATGGIGSDHEGEHFGPPYDLPNRLAYAETCASVNMMKLARRLFRLTGDARYADYYERA------LYNALL 336 (520)
T ss_pred HHHHHhcCeeccCCCcCCCCCccCCCCCCCCcCCCCccccHHHHHHHHHHHHHhcCCCchHHHHHHHH------Hhcccc
Confidence 444433 332211111110011101 1111 122256899999999887755433446777666554 366667
Q ss_pred CCcccee
Q 008300 415 TKLAGEN 421 (570)
Q Consensus 415 tGl~PE~ 421 (570)
.++.|+.
T Consensus 337 a~~~~d~ 343 (520)
T PF07944_consen 337 AGQSPDG 343 (520)
T ss_pred cccCCCC
Confidence 7777775
No 12
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.07 E-value=0.0095 Score=66.97 Aligned_cols=238 Identities=21% Similarity=0.185 Sum_probs=133.7
Q ss_pred HHHHhhcccCCCCCCcceeecCCCC--CCCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCCCC
Q 008300 205 ADRLLPAWNTRTGIPYNVINLAHGN--PHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPAD 282 (570)
Q Consensus 205 adrLLpAFdTptGiP~~~vNl~~g~--~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~~~ 282 (570)
-|+|+..|-.-.|+|-..+....-. ..+..|.+ ..+|-..==...+...|+|++..++++++++.|.+....+
T Consensus 25 ~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~-----~~~g~wl~a~a~~~~~~~D~~l~~~~d~~V~~l~~~Q~~d 99 (520)
T PF07944_consen 25 PDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRG-----HDVGKWLEAAAYAYAYTGDPELKAKADEIVDELAAAQQPD 99 (520)
T ss_pred HHHHhhhcCcccCCCCccccCCCCccCCCCCccCC-----CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccCC
Confidence 4678877776666766544222111 11111211 2234333335677889999999999999999999977788
Q ss_pred CCcceEecCC----CCCCCC---CeeeecccCchHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcccCCCCCe
Q 008300 283 GLLPIYISPD----RGTPSY---STITFGAMGDSFYEYLLKVWIQGNKTSAVKPYSRDMWETSMKGLLSLVRRSTPSSFT 355 (570)
Q Consensus 283 GL~p~~id~~----tg~~~~---~~~t~Ga~~DSfYEYLLK~~iL~g~~d~~~~~~~~~y~~A~~~i~~ll~~~~~~~~~ 355 (570)
|-+..+.+.. ...|.. ..+++| -.++=|+-.|..+|+..+ .+.-.+..+-+.+.+..-.+.
T Consensus 100 GYl~~~~~~~~~~~~~~w~~~~he~Y~~~----~ll~gl~~~y~~tG~~~~-----L~v~~k~ad~~~~~~~~~~~~--- 167 (520)
T PF07944_consen 100 GYLGTYPEERNFNPDDRWAPDMHELYCLG----KLLEGLIDYYEATGNERA-----LDVATKLADWVYRRLSRLGPE--- 167 (520)
T ss_pred ceecccccccccccccCCCCCccceehHh----HHHHHHHHHHHHHCcHHH-----HHHHHHHHHHHHHHhccCCHH---
Confidence 8777766544 223443 123332 134557777888887542 233333333332211111110
Q ss_pred eeeccCCCcccccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhhcCCCCccc--eeEeecCCCccccc
Q 008300 356 YICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAG--ENYFFRDGQDMSVG 433 (570)
Q Consensus 356 ~v~~~~g~~~~~~m~hLsCF~pGmlaLG~~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~P--E~~~f~~~~~~~~~ 433 (570)
+...+..|=.+||..-=.+.+..-..++++++|+.+.+.. |..| ... +++..+.
T Consensus 168 -----------~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~---------~~~~~~~~~----~~d~~~~ 223 (520)
T PF07944_consen 168 -----------PGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQR---------GFDPYDLAY----GQDHLPG 223 (520)
T ss_pred -----------HhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------CCCCCchhh----cCccCCC
Confidence 1112344555655321111122223579999998877643 2233 111 1111122
Q ss_pred cCCCCCchhHH------HHHHhHHhhcCCchHHHHHHHHHHHHHH-hcccCcCcccc
Q 008300 434 TSWNILRPETV------ESLFYLWRLTGNKTYKEWGWNIFQAFEK-NSRIESGYVGL 483 (570)
Q Consensus 434 ~~~y~LRPE~I------ESlfyLyR~TgD~~Yre~gW~if~ai~~-~~r~~~Gya~i 483 (570)
...+-.-|.+| ++.--+|++|||+.|++.+..+|+.+.+ +.-+..|..+-
T Consensus 224 ~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~ 280 (520)
T PF07944_consen 224 RHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSD 280 (520)
T ss_pred ccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCC
Confidence 23344455555 5888899999999999999999999975 45556677766
No 13
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.99 E-value=0.012 Score=66.09 Aligned_cols=176 Identities=16% Similarity=0.133 Sum_probs=109.4
Q ss_pred HHHhcC-CCCCChhHHHHHHHHHHhhcCCCC-Ccc-----------ccccchhhhhccccceeec-------cCCChHHH
Q 008300 139 LYSMCL-FWRISDYSFSSEFMWIANSLDFNK-SYD-----------ASVFETTIRVVGGLLSAYD-------LSGDKVFL 198 (570)
Q Consensus 139 L~IMgl-~~~~~~eEF~~A~~~V~~~ldF~~-~~~-----------VsvFEttIRvLGGLLSAY~-------LSgd~~lL 198 (570)
.|||-- -.....+-|++|++-|.+++-+.. ++. ....|--.-++|||++--- +..++..+
T Consensus 297 ~~il~~~~d~~~~~~~~~a~~~i~~~l~~~s~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~ 376 (522)
T PTZ00470 297 QWLYTNGREERYRRLFVESAKGIIEHLYKRSPKGLTYIAEMDGGSLTNKMEHLACFAGGMFALGAAINITPDDEKSARYM 376 (522)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhcccCCCCcEEEeeccCCcCcchhhhhhhhccchhhhcccccccccccccHHHH
Confidence 667642 111125568899988888764421 111 2334555567888765442 22356789
Q ss_pred HHHHHHHHHHhhccc-CCCCCCcceeecCCCCCC---CC--CCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHH
Q 008300 199 EKARDIADRLLPAWN-TRTGIPYNVINLAHGNPH---NP--SWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVI 272 (570)
Q Consensus 199 ~KA~dLadrLLpAFd-TptGiP~~~vNl~~g~~~---~~--~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~ 272 (570)
+.|++|++--.-+|+ +||||.--.+++..+... .. .+-.-.--+.|. .-+|-|+|||++|.+.+-+++
T Consensus 377 ~~a~~l~~tC~~~Y~~~~tGl~PE~~~~~~~~~~~~~~~~d~~Y~LRPE~iES------~fylyR~TgD~~yre~gW~~f 450 (522)
T PTZ00470 377 EVGEEVTKTCYETYATSPTGLGPEIFHFDPNSGDISPNVHDSHYILRPETVES------IFILYRLTGDPKYREWAWKIF 450 (522)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEeccCccccccccCCCCCCCChhHHHH------HHHHHHHhCCHHHHHHHHHHH
Confidence 999999999888886 799997666666432110 00 000001111221 457999999999999999999
Q ss_pred HHHhhcCCCCCCcceEecCCCCCCCCCeeeecccCchHH--HHHHHHHHhcCCCC
Q 008300 273 VELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFY--EYLLKVWIQGNKTS 325 (570)
Q Consensus 273 ~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfY--EYLLK~~iL~g~~d 325 (570)
+.|.+....++=+...-|+.+... ...-.-.||+ |-|-=.|+|+.+.+
T Consensus 451 ~ai~k~~rt~~Gya~i~dV~~~~~-----~~~D~MeSFflaETLKYlYLlFsd~~ 500 (522)
T PTZ00470 451 QAIEKHCKTENGYSGLKNVLTVHP-----QQDDFQESFFLAETLKYLYLLFQPDH 500 (522)
T ss_pred HHHHHHhcCCcccccccccCCCCC-----CcCCcccchhHHHHHHHHHheecCcc
Confidence 999995444544555556654211 1223457888 88888899998765
No 14
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=96.80 E-value=0.048 Score=57.56 Aligned_cols=242 Identities=17% Similarity=0.118 Sum_probs=138.1
Q ss_pred hhhHHHHHHHhCCchHHHHHHHHHHHHhhcC--CCCCCcceEecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCC
Q 008300 249 QLELIALSQRTGDPKYRQKAEKVIVELNKTF--PADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSA 326 (570)
Q Consensus 249 ~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~--~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfYEYLLK~~iL~g~~d~ 326 (570)
.==|..+.+ +|+|.|.++|++.++.|.+.. +..|-+-..++... +... ......++|.=+-+=.+..+|+.+
T Consensus 27 ~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~--~~~~--~~~~Y~~af~l~ala~~~~tg~~~- 100 (346)
T PF07221_consen 27 LYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG--PLDP--QKDLYDQAFALLALAEARATGDPE- 100 (346)
T ss_dssp HHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE--EEE----EEHHHHHHHHHHHHHHHCTT-TT-
T ss_pred HHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC--CCcc--ccchHHHHHHHHHHHHHHHhCChh-
Confidence 344777778 899999999999999999854 44465555554222 2221 222334445433333466777765
Q ss_pred cccccHHHHHHHHHHHHHhhcccCCCCCeeeeccCC--Cc---ccccccccccccchhhhhhcCCCCCCCchHHHHHHHH
Q 008300 327 VKPYSRDMWETSMKGLLSLVRRSTPSSFTYICEKNG--DS---LIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEE 401 (570)
Q Consensus 327 ~~~~~~~~y~~A~~~i~~ll~~~~~~~~~~v~~~~g--~~---~~~~m~hLsCF~pGmlaLG~~~~~~~~~~~~l~lA~~ 401 (570)
+ .+.=.++++-|.+++....... |.....+ .. ..+.|.- +-++++|-... ..+++++.|++
T Consensus 101 ---~-~~~A~~~~~~l~~~~~d~~~g~--~~~~~~~~~~~~r~~n~~mhl----~eA~l~l~~~~----~~~~~~~~a~~ 166 (346)
T PF07221_consen 101 ---A-LELAEQTLEFLERRFWDPEGGG--YRESFDPDWSPPRGQNPHMHL----LEAFLALYEAT----GDPRYLDRAEE 166 (346)
T ss_dssp ---H-HHHHHHHHHHHHHHTEETTTTE--E--EETTTSSCBEEHHHHHHH----HHHHHHHHHHH----HHHHHHHHHHH
T ss_pred ---H-HHHHHHHHHHHHHHhcccccCc--ceeccCCccccCCCCChhHHH----HHHHHHHHHhc----cCHHHHHHHHH
Confidence 4 4555677777777765443222 2222111 11 2223322 33445543321 14679999999
Q ss_pred HHHHHHHhhhcCCCCccceeEeecCCCccccccC-----CCCCch-hHHHHHHhHHhhc-----CCchHHHHHHHHHHHH
Q 008300 402 LAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTS-----WNILRP-ETVESLFYLWRLT-----GNKTYKEWGWNIFQAF 470 (570)
Q Consensus 402 L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~-----~y~LRP-E~IESlfyLyR~T-----gD~~Yre~gW~if~ai 470 (570)
|++.|..-.-...+|..||.|+-+-... ..... .+..-| -.+|..++|.++- +++.|.+.|.+++...
T Consensus 167 l~~~~~~~f~~~~~g~~~E~f~~dw~~~-~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~l~~~~ 245 (346)
T PF07221_consen 167 LLDLFLDRFADPESGALPEFFDRDWNPL-PDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERARRLFDFA 245 (346)
T ss_dssp HHHHHHTTCHHCCTTEETSEEETTSEBE-TTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCeeeeeeccccccc-cccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 9999995554567899999886432100 00111 111222 6899999998887 8999999999999988
Q ss_pred HHhcccCc-C-ccccccCCCCCCCCCcchHHHHHHHHHHHHhc
Q 008300 471 EKNSRIES-G-YVGLKDVNTGDKDNMMQSFFLAETLKYLYLLF 511 (570)
Q Consensus 471 ~~~~r~~~-G-ya~i~dV~~~~~~D~meSFflaETLKYLYLLF 511 (570)
.++.-.+. | +-..-|.+.....+..--.--+|.||=++.++
T Consensus 246 ~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~ 288 (346)
T PF07221_consen 246 LEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAY 288 (346)
T ss_dssp HHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHH
T ss_pred HHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHH
Confidence 88776544 4 22222333322333333334578887666655
No 15
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=96.74 E-value=0.029 Score=59.21 Aligned_cols=282 Identities=19% Similarity=0.209 Sum_probs=144.5
Q ss_pred hhhhhccccceeeccCCChHHHHHHHHHHHHHhhcc-cCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHH
Q 008300 177 TTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAW-NTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIAL 255 (570)
Q Consensus 177 ttIRvLGGLLSAY~LSgd~~lL~KA~dLadrLLpAF-dTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~L 255 (570)
++-|.|=-+=.||. .|++..|+.|+...+.|...| |..+|-=+..++-. | +..+. ...-+. .=..+-+..
T Consensus 22 ~q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~-~-~~~~~----~~~Y~~-af~l~ala~- 92 (346)
T PF07221_consen 22 VQARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDG-G-PLDPQ----KDLYDQ-AFALLALAE- 92 (346)
T ss_dssp HHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETT-E-EEE------EEHHHH-HHHHHHHHH-
T ss_pred eeHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCC-C-CCccc----cchHHH-HHHHHHHHH-
Confidence 44555555666777 689999999999999999766 45546445455321 2 21111 111121 122344555
Q ss_pred HHHhCCchHHHHHHHHHHHHhhcC--CCCCCcceEecCCCCCCCCCeeeecccCch---HHHHHHHHHHhcCCCCCcccc
Q 008300 256 SQRTGDPKYRQKAEKVIVELNKTF--PADGLLPIYISPDRGTPSYSTITFGAMGDS---FYEYLLKVWIQGNKTSAVKPY 330 (570)
Q Consensus 256 S~lTGd~kY~~~a~~i~~~L~~~~--~~~GL~p~~id~~tg~~~~~~~t~Ga~~DS---fYEYLLK~~iL~g~~d~~~~~ 330 (570)
++.||++.|.+.|+++++.|.+.. +..|++....++.-... ....+ ..|-++..+-++++. .|
T Consensus 93 ~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~--------r~~n~~mhl~eA~l~l~~~~~~~----~~ 160 (346)
T PF07221_consen 93 ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPP--------RGQNPHMHLLEAFLALYEATGDP----RY 160 (346)
T ss_dssp HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCB--------EEHHHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccC--------CCCChhHHHHHHHHHHHHhccCH----HH
Confidence 678999999999999999999853 44577766666543222 11122 356667777777642 24
Q ss_pred cHHHHHHHHHHHHHhhcccCCC-CCeeeec-cCC---Ccccccccccc--cccchhhh------hhcCCCCCCCchHHHH
Q 008300 331 SRDMWETSMKGLLSLVRRSTPS-SFTYICE-KNG---DSLIDKMDELA--CFAPGMIA------LGSSGYGPGDSEKFLS 397 (570)
Q Consensus 331 ~~~~y~~A~~~i~~ll~~~~~~-~~~~v~~-~~g---~~~~~~m~hLs--CF~pGmla------LG~~~~~~~~~~~~l~ 397 (570)
++.-.+.++.+.+.+...... -..|.+. ++. .... +.+. .+-||-.. +-.........++.++
T Consensus 161 -~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~---d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~ 236 (346)
T PF07221_consen 161 -LDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGD---DTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLE 236 (346)
T ss_dssp -HHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTT---HSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHH
T ss_pred -HHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccc---cccccCccCCchhHHHHHHHHHHHHhcccccHHHHH
Confidence 444455555544322211111 0112221 111 0000 0000 01233211 1110000012467788
Q ss_pred HHHHHHHHHHHhhhcCCCCccceeEeecCCCccccccCCCC--CchhHHHHHHhHHhhcCCchHHHHHHHHHHHHHHhcc
Q 008300 398 LAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNI--LRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSR 475 (570)
Q Consensus 398 lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~--LRPE~IESlfyLyR~TgD~~Yre~gW~if~ai~~~~r 475 (570)
.|.+|+..+.+.=-....|...-.++.+ | .+.+..-. --.|.+-.+..+|++|||+.|.+++-++++-+.++..
T Consensus 237 ~a~~l~~~~~~~G~d~~~gG~~~~~d~~-g---~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~~~~~~ 312 (346)
T PF07221_consen 237 RARRLFDFALEHGWDREGGGLFYSVDRD-G---KPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYIFRHFI 312 (346)
T ss_dssp HHHHHHHHHHHHHBSTTTSSB-SEEETT-S----BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHHheEecCCCeEEEEEeCC-C---CccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhCC
Confidence 8888887666532221222111111111 1 11111111 1359999999999999999999999999999999986
Q ss_pred cC--cCccccccCC
Q 008300 476 IE--SGYVGLKDVN 487 (570)
Q Consensus 476 ~~--~Gya~i~dV~ 487 (570)
.+ +++-..-|-+
T Consensus 313 d~~~G~W~~~l~~d 326 (346)
T PF07221_consen 313 DPEYGEWFDYLDRD 326 (346)
T ss_dssp -TTTSSB-SEE-TT
T ss_pred CCCCCeeEeeECCC
Confidence 53 3465554543
No 16
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=96.68 E-value=0.00092 Score=71.90 Aligned_cols=150 Identities=25% Similarity=0.322 Sum_probs=83.8
Q ss_pred cccceeeccCCCh-----HHHHHHHHHHHHHhhcccCC---CCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHH
Q 008300 183 GGLLSAYDLSGDK-----VFLEKARDIADRLLPAWNTR---TGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIA 254 (570)
Q Consensus 183 GGLLSAY~LSgd~-----~lL~KA~dLadrLLpAFdTp---tGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~ 254 (570)
=++|.||++++++ .+|++|+++.+.+...||+. .||++...+...+. .+..++. -|-..+=..+
T Consensus 95 la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~~~------~~Kna~s--N~~~~~laar 166 (370)
T PF03663_consen 95 LALLRAYELTGDQPSDNPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTNSGY------DYKNAIS--NGPAAQLAAR 166 (370)
T ss_dssp HHHHHHHHHH--H-----HHHHHHHHHHHHHHHTB-SGG-GS-BEEET----TEE------EEEEHHH--HHHHHHHHHH
T ss_pred HHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHhcCCccCCCCccccccccCCCC------Ccccccc--hHHHHHHHHH
Confidence 3688999999999 99999999999999999986 47877522111111 0111211 1112233568
Q ss_pred HHHHhCCchHHHHHHHHHHHHhh--cC-CCCCCcceEecCCC-CCCCC-CeeeecccCchHHHHHHHHHHhcCCCCCccc
Q 008300 255 LSQRTGDPKYRQKAEKVIVELNK--TF-PADGLLPIYISPDR-GTPSY-STITFGAMGDSFYEYLLKVWIQGNKTSAVKP 329 (570)
Q Consensus 255 LS~lTGd~kY~~~a~~i~~~L~~--~~-~~~GL~p~~id~~t-g~~~~-~~~t~Ga~~DSfYEYLLK~~iL~g~~d~~~~ 329 (570)
|.++|||.+|.+.|+++++-+.+ .. +.+|++-+.++..+ |.-.. ...|. +.=.|-.=+.-.|-.+++.. .
T Consensus 167 L~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TY--NqG~~l~a~~~Ly~~T~~~~---~ 241 (370)
T PF03663_consen 167 LYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTY--NQGVFLGAAAYLYNATNDEQ---T 241 (370)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HH--HHHHHHHHHHHHHHHH--H----H
T ss_pred HHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceech--HHHHHHHHHHHHHHhcCCcc---H
Confidence 99999999999999999999988 33 55699999998776 43221 11111 00122334555666675431 4
Q ss_pred ccHHHHHHHHHHHHHhh
Q 008300 330 YSRDMWETSMKGLLSLV 346 (570)
Q Consensus 330 ~~~~~y~~A~~~i~~ll 346 (570)
| .++=.+.++++.+++
T Consensus 242 y-l~~A~~la~~~~~~~ 257 (370)
T PF03663_consen 242 Y-LDRAEKLADAAINHF 257 (370)
T ss_dssp H-HHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHh
Confidence 6 666666777766653
No 17
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.10 E-value=0.056 Score=56.93 Aligned_cols=248 Identities=21% Similarity=0.213 Sum_probs=132.9
Q ss_pred hccccceeeccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhC
Q 008300 181 VVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTG 260 (570)
Q Consensus 181 vLGGLLSAY~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTG 260 (570)
+.+||+.+|+.++|+.+++.|++.++.++......+ ......+|-+. ..|-+.||
T Consensus 30 ~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~~~~----------------------~~d~~~~g~~~---~~~y~~t~ 84 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDERYLDYAERWADRFIEEDGSDY----------------------NLDDHDIGFLL---LDLYERTG 84 (336)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTT----------------------SCCGTTHHHHH---HHHHHHH-
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccCCcc----------------------CCchhhhHHHH---HHHHHHhC
Confidence 678899999999999999999999999987654310 00112233333 34889999
Q ss_pred CchHHHHHHHHHHHHh-hcCC-CCCCcceEecCCCCCCCCCeeeecccCchHH---HHHHHHHHhcCCCCCcccccHHHH
Q 008300 261 DPKYRQKAEKVIVELN-KTFP-ADGLLPIYISPDRGTPSYSTITFGAMGDSFY---EYLLKVWIQGNKTSAVKPYSRDMW 335 (570)
Q Consensus 261 d~kY~~~a~~i~~~L~-~~~~-~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfY---EYLLK~~iL~g~~d~~~~~~~~~y 335 (570)
|++|.+++.++.+.+. +... ..|-+.. +... . .-.+ .|+.| ..|.....++|+. +.+
T Consensus 85 d~~y~~~~~~~a~~~l~~~~~~~~G~~~~--~~~~----~-~~~w---iD~~~M~~p~l~~~~~~tgd~--------~~~ 146 (336)
T PF07470_consen 85 DEKYKDAAIQAADWLLARRPRTSDGGFWH--NRPY----P-NQVW---IDGMYMNLPFLAWAGKLTGDP--------KYL 146 (336)
T ss_dssp THHHHHHHHHHHHHHHHTSCBECTGCBEC--TTTS----T-TEEE---TTHHHHHHHHHHHHHHHHTGH--------HHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCCcccc--CCCC----C-Ccee---eccccccHHHHHHHHHHHCCc--------HHH
Confidence 9999999999999444 4333 3444432 1111 1 1111 78888 8888999999864 344
Q ss_pred HHHHHHHHH---hhcccCCCCCeeeeccCCCcccccccccccccchh--hhhhcC----CCC--CCCchHHHHHHHHHHH
Q 008300 336 ETSMKGLLS---LVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGM--IALGSS----GYG--PGDSEKFLSLAEELAW 404 (570)
Q Consensus 336 ~~A~~~i~~---ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGm--laLG~~----~~~--~~~~~~~l~lA~~L~~ 404 (570)
+.|+..+.. ++... ..++.+ .........+..+ +|..=|+ .++|-. ..+ ....+.+++.++++++
T Consensus 147 ~~a~~q~~~~~~~~~d~-~tGl~~-h~~~~~~~~~~s~--~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~ 222 (336)
T PF07470_consen 147 DEAVRQFRLTRKYLYDP-ETGLYY-HGYTYQGYADWSD--SFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLAD 222 (336)
T ss_dssp HHHHHHHHHHHHHHB-T-TTSSBE-SEEETTSSSTTST----BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CCCcee-eccCCCCCcCccc--ccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence 555555443 33322 233322 2211111111000 2221111 111110 011 1123567777788887
Q ss_pred HHHHhhhcCCCCccceeEeecCCCccccccCCCCCchhHHHHHHhHHhhc--------CCchHHHHHHHHHHHHHHhccc
Q 008300 405 TCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLT--------GNKTYKEWGWNIFQAFEKNSRI 476 (570)
Q Consensus 405 tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~T--------gD~~Yre~gW~if~ai~~~~r~ 476 (570)
.+.+ ++. ++|+-+-.+ .++.-.-.+|+==|.++.|-+- .++.|++.|-++++++.++.-.
T Consensus 223 ~l~~-~q~-~~G~w~~~~----------~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~ 290 (336)
T PF07470_consen 223 ALAR-YQD-EDGLWYQDL----------DDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAID 290 (336)
T ss_dssp HHHT-TST-TTSBEBSBT----------TTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-
T ss_pred HHHh-cCC-CCCCcceec----------CCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccC
Confidence 7654 222 556432111 1111122356655555555442 2679999999999999998223
Q ss_pred CcCccccccCC
Q 008300 477 ESGYVGLKDVN 487 (570)
Q Consensus 477 ~~Gya~i~dV~ 487 (570)
+.|-.++.++-
T Consensus 291 ~dG~~~~~~~~ 301 (336)
T PF07470_consen 291 PDGKLGLKGVC 301 (336)
T ss_dssp TTSSSBBTCEB
T ss_pred CCCCeEEeeeE
Confidence 45766666653
No 18
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.60 E-value=0.031 Score=61.88 Aligned_cols=169 Identities=18% Similarity=0.189 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHhhcCCC--CCc-----------------cccccchhhhhccccc--eeeccCCChHHHHHHHHHHHHH
Q 008300 150 DYSFSSEFMWIANSLDFN--KSY-----------------DASVFETTIRVVGGLL--SAYDLSGDKVFLEKARDIADRL 208 (570)
Q Consensus 150 ~eEF~~A~~~V~~~ldF~--~~~-----------------~VsvFEttIRvLGGLL--SAY~LSgd~~lL~KA~dLadrL 208 (570)
.+-|++|++-|.+++-+. .+. ....++.-.-.+||+| +|..+ +++..++.|.+|++--
T Consensus 233 ~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~-~~~~~~~~A~~l~~~C 311 (452)
T PF01532_consen 233 RDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLF-NDEGDLELAEELTETC 311 (452)
T ss_dssp HHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhccc-CchhHHHHHHHHHHHH
Confidence 566899999998886554 111 1234566667888864 45566 7789999999999998
Q ss_pred hhccc-CCCCCCcceeecCCCCCCCCCCCCC--Ccccc-ccccch--hh----HHHHHHHhCCchHHHHHHHHHHHHhhc
Q 008300 209 LPAWN-TRTGIPYNVINLAHGNPHNPSWTGG--ESILA-DSGTEQ--LE----LIALSQRTGDPKYRQKAEKVIVELNKT 278 (570)
Q Consensus 209 LpAFd-TptGiP~~~vNl~~g~~~~~~~~~~--~s~lA-e~GSl~--LE----F~~LS~lTGd~kY~~~a~~i~~~L~~~ 278 (570)
.-.++ +|||+.--.+++.... .+..|... ...+. ..+... -| +-+|-|+||||+|.+.+-.+++.|.+.
T Consensus 312 ~~~y~~~~tGl~PE~~~~~~~~-~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~if~ai~k~ 390 (452)
T PF01532_consen 312 YWLYKSTPTGLGPEIFSFDPCE-ENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDPKYREWGWDIFQAIEKY 390 (452)
T ss_dssp HHHHHTSSSSS--SEEEESCSC-G--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCceEEEeeccc-cccccchhhcccccccccccccchhhhhhheeEEEEEcCCchHHHHHHHHHHHHHHh
Confidence 88887 5899988888887522 00001000 00000 111111 13 457999999999999999999999995
Q ss_pred CCCCCCcceEecCCCCCCCCCeeeecccCchHH--HHHHHHHHhcCCCC
Q 008300 279 FPADGLLPIYISPDRGTPSYSTITFGAMGDSFY--EYLLKVWIQGNKTS 325 (570)
Q Consensus 279 ~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfY--EYLLK~~iL~g~~d 325 (570)
...++=+...-|+.... -...-...||+ |-|-=.|+|+.+.+
T Consensus 391 ~r~~~G~a~i~dv~~~~-----~~~~D~meSf~laETlKYlYLlFsd~~ 434 (452)
T PF01532_consen 391 CRTECGYAGIKDVTSDP-----PQKDDRMESFFLAETLKYLYLLFSDPD 434 (452)
T ss_dssp TEETTEE--BSETTSSS-----SCBBS-B-CHHHHTHHHHHHHHTSSTT
T ss_pred cccceehhhhcccCcCC-----cccCCCccceehHhhhHHHHhhcCCcc
Confidence 54454455555665321 11222356776 66666689998876
No 19
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=95.20 E-value=0.91 Score=46.94 Aligned_cols=94 Identities=22% Similarity=0.187 Sum_probs=59.7
Q ss_pred ccchhhhhccccceeeccCCChHHHHHHHHHHHHHhhccc-CCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhH
Q 008300 174 VFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWN-TRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLEL 252 (570)
Q Consensus 174 vFEttIRvLGGLLSAY~LSgd~~lL~KA~dLadrLLpAFd-TptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF 252 (570)
++--..=++=+|+..|+. +|+.+++.|++++++|+..-. ...+..+ ..+......+..|. ..+.+=+
T Consensus 81 l~~G~aG~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~G~~hG~------aGi~~~L 148 (321)
T cd04791 81 LASGLAGIGLALLYFART-GDPALLEAAAKIAELLAEALERGDPALLW-----PDFDRVDHGLLHGW------AGIALFL 148 (321)
T ss_pred cccchHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhcccccccc-----ccCCCCCCccccCc------HHHHHHH
Confidence 333333344456777888 999999999999999976432 2222211 11111122222222 2233447
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHhhcC
Q 008300 253 IALSQRTGDPKYRQKAEKVIVELNKTF 279 (570)
Q Consensus 253 ~~LS~lTGd~kY~~~a~~i~~~L~~~~ 279 (570)
..|.+.|||++|.+.|.++.+.+.+..
T Consensus 149 ~~l~~~t~d~~~l~~A~~~~~~~~~~~ 175 (321)
T cd04791 149 LRLYKATGDSRYLELAEEALDKELARA 175 (321)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhh
Confidence 889999999999999999999987743
No 20
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.8 Score=52.87 Aligned_cols=280 Identities=18% Similarity=0.161 Sum_probs=155.6
Q ss_pred ccccchh----hhhccccceeeccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCC--CCCCCCCCCCcccccc
Q 008300 172 ASVFETT----IRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGN--PHNPSWTGGESILADS 245 (570)
Q Consensus 172 VsvFEtt----IRvLGGLLSAY~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~--~~~~~~~~~~s~lAe~ 245 (570)
|.-||=. -=.+=-+.=||.++||+.+++.|+++-+.|+.---+|-|=-|+..+-.+.- .....|+..+. -+..
T Consensus 265 vPHFEKMLyDnA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi-~~~L 343 (667)
T COG1331 265 VPHFEKMLYDNALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEEL-KEVL 343 (667)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCceeecccccCcccCCCeeecCHHHH-HHHh
Confidence 6668843 333334556789999999999999999999987777877666555443221 11222432111 1112
Q ss_pred ccchhhHHHHHHHhCC-------------------chHHHHHHHHHHHHhh---cCCCCCCcceEecCCCCCCCCCeeee
Q 008300 246 GTEQLELIALSQRTGD-------------------PKYRQKAEKVIVELNK---TFPADGLLPIYISPDRGTPSYSTITF 303 (570)
Q Consensus 246 GSl~LEF~~LS~lTGd-------------------~kY~~~a~~i~~~L~~---~~~~~GL~p~~id~~tg~~~~~~~t~ 303 (570)
|..-=+|...--+|.. +.-.+.++++.++|.. .+..++ +|-.. . ..|
T Consensus 344 g~d~~~~~~~f~vs~~GnfeGrnvL~~~~~~~~~~~~~~~~l~~~r~kL~~~R~~R~~P~-----~Ddkv--l----t~w 412 (667)
T COG1331 344 GEDAELACKYFDVSEEGNFEGRNVLHVPGPLEEAIEEAEEKLERAREKLLAAREKRKQPS-----RDDKV--L----TDW 412 (667)
T ss_pred cccHHHHHHHcccCCCCCcCCceeecccCchhhhhhhhHHHHHHHHHHHHHHHHhCCCCC-----CCcce--e----ecc
Confidence 2111112222222211 2234556666666655 333332 22111 1 112
Q ss_pred -cccCchHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcccCCCCCeeeeccCCCc-ccccccccccccchhhh
Q 008300 304 -GAMGDSFYEYLLKVWIQGNKTSAVKPYSRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDS-LIDKMDELACFAPGMIA 381 (570)
Q Consensus 304 -Ga~~DSfYEYLLK~~iL~g~~d~~~~~~~~~y~~A~~~i~~ll~~~~~~~~~~v~~~~g~~-~~~~m~hLsCF~pGmla 381 (570)
|-++. =|.+.+..+|+.+ | .+.=+++.+-|.+.+... .--..+ ..|.. .....+--+.++-|+++
T Consensus 413 Nglmi~----aLa~a~~~~~d~~----~-l~~A~~~~~fi~~~l~~~-rl~~~~---~~G~a~~~g~leDYA~~i~gll~ 479 (667)
T COG1331 413 NGLMIA----ALAEAGRVLGDPE----Y-LEAAERAADFILDNLYVD-RLLRRY---RGGEAAVAGLLEDYAFLILGLLA 479 (667)
T ss_pred HHHHHH----HHHHHHHHcCChH----H-HHHHHHHHHHHHHhhccc-chheee---ecCcccccccchhHHHHHHHHHH
Confidence 22233 3788888888755 4 455566666666644332 100111 11221 12233445667888999
Q ss_pred hhcCCCCCCCchHHHHHHHHHHHHHHHhhhcCCCCccceeEeecCCCc--c-----ccccCCCCCch--hHHHHHHhHHh
Q 008300 382 LGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQD--M-----SVGTSWNILRP--ETVESLFYLWR 452 (570)
Q Consensus 382 LG~~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~--~-----~~~~~~y~LRP--E~IESlfyLyR 452 (570)
|.-..+ ...+|+.|++|++.-...+..-..| |....+.. + .+.|... -.| =.+.-+.-|-+
T Consensus 480 lye~t~----d~~yL~~A~~L~~~~i~~f~d~~gG-----f~~t~~~~~~l~ir~~~~~D~a~-~S~na~~~~~L~~Ls~ 549 (667)
T COG1331 480 LYEATG----DLAYLEKAIELADEAIADFWDDEGG-----FYDTPSDSEDLLIRPKEPTDGAT-PSGNAVAAQALLRLSL 549 (667)
T ss_pred HHHhhC----cHHHHHHHHHHHHHHHHHhcCCCCC-----cccCCCcccccccCCCCCCCCCC-CCHHHHHHHHHHHHHh
Confidence 876554 4689999999998877666552212 22211110 0 0111110 111 25777888999
Q ss_pred hcCCchHHHHHHHHHHHHHHhcc-cCcCccccccC
Q 008300 453 LTGNKTYKEWGWNIFQAFEKNSR-IESGYVGLKDV 486 (570)
Q Consensus 453 ~TgD~~Yre~gW~if~ai~~~~r-~~~Gya~i~dV 486 (570)
+|||.+|.|.|+++++++..... .+.|++++-.+
T Consensus 550 ltg~~~y~e~A~~~L~a~~~~~~~~p~~~~~~~~a 584 (667)
T COG1331 550 LTGDARYLEAAEDILQAFAGLAERAPFAHAGLLLA 584 (667)
T ss_pred hcCchhHHHHHHHHHHHHHHHHHhCCccchHHHHH
Confidence 99999999999999999987665 47788887654
No 21
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=92.90 E-value=6.8 Score=46.51 Aligned_cols=231 Identities=16% Similarity=0.122 Sum_probs=122.6
Q ss_pred cceeeccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchH
Q 008300 185 LLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKY 264 (570)
Q Consensus 185 LLSAY~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY 264 (570)
|+-+|..++++.+++.|.++++.+...-. +.... . .+...+.+.+=+..|.+.|+++.|
T Consensus 550 L~~l~~~~~~~~~~~~a~~~~~~l~~~~~-----~~~~~----------D------~~~G~aGii~~Ll~l~~~~~~~~~ 608 (825)
T cd04792 550 LTHLGKLLKDDRLLNLAKEILDLIDELIE-----KDEKL----------D------FISGAAGLILVLLSLYELFLSERF 608 (825)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhc-----cccCC----------C------EeeecHHHHHHHHHHHhccCChHH
Confidence 34556778899999999999888754211 10001 1 122222333446688999999999
Q ss_pred HHHHHHHHHHHhhcC--CCCCCcceEecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHH
Q 008300 265 RQKAEKVIVELNKTF--PADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYSRDMWETSMKGL 342 (570)
Q Consensus 265 ~~~a~~i~~~L~~~~--~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfYEYLLK~~iL~g~~d~~~~~~~~~y~~A~~~i 342 (570)
.+.|.++.+.+.+.. ...+.. +.. . ....+|.-+.-..--.|++.+..+++.+ + .+.-.++++..
T Consensus 609 l~~a~~~~~~l~~~~~~~~~~~~-----~~~-~--~~~~G~aHG~sGi~~aL~~l~~~~~d~~----~-~~~a~~~l~~~ 675 (825)
T cd04792 609 LDLALKCGDHLLENASNEDGGIG-----PAE-Q--PNLTGFAHGASGIAWALLRLYKVTGDSR----Y-LKLAHKALKYE 675 (825)
T ss_pred HHHHHHHHHHHHHhhhhccCCcc-----ccc-c--cccccccccHHHHHHHHHHHHHHcCcHH----H-HHHHHHHHHHH
Confidence 999999999987632 122322 111 1 1123443333344456888887776533 4 44444444433
Q ss_pred HHhhcccCCCCCeeeeccCCCcccccccccccc-cchhhhhhcCCCCC--CCchHHHHHHHHHHHHHHHhhhcCCCCccc
Q 008300 343 LSLVRRSTPSSFTYICEKNGDSLIDKMDELACF-APGMIALGSSGYGP--GDSEKFLSLAEELAWTCYNFYQSTPTKLAG 419 (570)
Q Consensus 343 ~~ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF-~pGmlaLG~~~~~~--~~~~~~l~lA~~L~~tC~~~y~~t~tGl~P 419 (570)
.+...... .+.. .. .+ ...+... |- .+|++..-...... .+.+...+.+..+.+++.... . +
T Consensus 676 ~~~~~~~~-~~w~--~~-~~---~~~~~~W-ChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~~------~-~ 740 (825)
T cd04792 676 RRLFSEEG-WNWP--RK-DG---NSFSAAW-CHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKEG------F-G 740 (825)
T ss_pred HHhcCHhh-cCCC--Cc-Cc---CCCCCcc-cCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhc------C-C
Confidence 22211111 1111 00 00 0001111 22 45544321111111 123455566666666654321 0 0
Q ss_pred eeEeecCCCccccccCCCCCchhHHHHHHhHHhhcCCchHHHHHHHHHHHHHHhccc
Q 008300 420 ENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRI 476 (570)
Q Consensus 420 E~~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~TgD~~Yre~gW~if~ai~~~~r~ 476 (570)
.. ....--.+-.++.+.++++.|+|++|++.+-..++.+......
T Consensus 741 ~~------------~slCHG~~Gil~~ll~~~~~~~~~~~~~~a~~~~~~l~~~~~~ 785 (825)
T cd04792 741 NN------------HSLCHGDLGNLEILLYAAKAFGDEKLQELANSLAIKVLSQGKK 785 (825)
T ss_pred CC------------CeecCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 01 1122333447899999999999999999999999988877664
No 22
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=92.65 E-value=0.48 Score=49.93 Aligned_cols=205 Identities=21% Similarity=0.197 Sum_probs=102.9
Q ss_pred ceeeccCCChHHHHHHHHHHHHHhhcc-cCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhh-HHHHHHHhCCch
Q 008300 186 LSAYDLSGDKVFLEKARDIADRLLPAW-NTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLE-LIALSQRTGDPK 263 (570)
Q Consensus 186 LSAY~LSgd~~lL~KA~dLadrLLpAF-dTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LE-F~~LS~lTGd~k 263 (570)
+-.|.+++|+.+++.|++.++.++..+ .++.|-.+. ... . ...+..+.--|.++ +.+.++.|||++
T Consensus 77 ~~~y~~t~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~------~~~-~-----~~~~wiD~~~M~~p~l~~~~~~tgd~~ 144 (336)
T PF07470_consen 77 LDLYERTGDEKYKDAAIQAADWLLARRPRTSDGGFWH------NRP-Y-----PNQVWIDGMYMNLPFLAWAGKLTGDPK 144 (336)
T ss_dssp HHHHHHH-THHHHHHHHHHHHHHHHTSCBECTGCBEC------TTT-S-----TTEEETTHHHHHHHHHHHHHHHHTGHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCCCCCCcccc------CCC-C-----CCceeeccccccHHHHHHHHHHHCCcH
Confidence 559999999999999999999766544 445553332 111 1 12334553333444 456899999999
Q ss_pred HHHHHHHHHHHHhhc--CCCCCCcceEecCCCCCCCCCeeeeccc-------CchHHHHHHHHHHhcCCCCCcccccHHH
Q 008300 264 YRQKAEKVIVELNKT--FPADGLLPIYISPDRGTPSYSTITFGAM-------GDSFYEYLLKVWIQGNKTSAVKPYSRDM 334 (570)
Q Consensus 264 Y~~~a~~i~~~L~~~--~~~~GL~p~~id~~tg~~~~~~~t~Ga~-------~DSfYEYLLK~~iL~g~~d~~~~~~~~~ 334 (570)
|.+.|.+-++...+. .+..||+=...+......... ..|+-+ .---|++|.+.. .. -+.+ .+.
T Consensus 145 ~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~-~~WsRG~gW~~~Gl~~~l~~lp~~~-----~~-~~~~-~~~ 216 (336)
T PF07470_consen 145 YLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSD-SFWSRGNGWAIYGLAEVLEYLPEDH-----PE-RDEL-LEI 216 (336)
T ss_dssp HHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST---BHHHHHHHHHHHHHHHHHHHTTH-----HH-HHHH-HHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCccc-ccCcchhhHHHHHHHHHHHHhcchh-----hh-HHHH-HHH
Confidence 999888877777762 245677655555444321111 112111 111245543311 00 0122 344
Q ss_pred HHHHHHHHHHhhcccCCCCCeeeeccCCCc-ccccccccccccchhhhhhcC-CCCCCCchHHHHHHHHHHHHHHHhhhc
Q 008300 335 WETSMKGLLSLVRRSTPSSFTYICEKNGDS-LIDKMDELACFAPGMIALGSS-GYGPGDSEKFLSLAEELAWTCYNFYQS 412 (570)
Q Consensus 335 y~~A~~~i~~ll~~~~~~~~~~v~~~~g~~-~~~~m~hLsCF~pGmlaLG~~-~~~~~~~~~~l~lA~~L~~tC~~~y~~ 412 (570)
+.+.++.+.++ ..+.++.+-.-..+.. .....+.=+.|+-|++- |-. +. .+.+++.+.|++..+++... ..
T Consensus 217 ~~~~~~~l~~~---q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~-gi~~g~--~d~~~y~~~a~~a~~~l~~~-~~ 289 (336)
T PF07470_consen 217 AKKLADALARY---QDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLR-GIRLGL--LDPEEYRPAAEKALEALLSN-AI 289 (336)
T ss_dssp HHHHHHHHHTT---STTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHH-HHHTTS--STHHHHHHHHHHHHHHHHHC-EB
T ss_pred HHHHHHHHHhc---CCCCCCcceecCCCCCCCcccHHHHHHHHHHHHH-HHHcCC--CccHHHHHHHHHHHHHHHhC-cc
Confidence 44444444432 2233332221111111 12233333445555532 221 12 23678999998888888766 33
Q ss_pred CCCCc
Q 008300 413 TPTKL 417 (570)
Q Consensus 413 t~tGl 417 (570)
.+.|.
T Consensus 290 ~~dG~ 294 (336)
T PF07470_consen 290 DPDGK 294 (336)
T ss_dssp -TTSS
T ss_pred CCCCC
Confidence 34443
No 23
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=92.63 E-value=0.19 Score=51.89 Aligned_cols=95 Identities=22% Similarity=0.282 Sum_probs=65.7
Q ss_pred ccchhhhhccccceeeccCCChHHHHHHHHHHHHHhhcccC-CCCCCcceeecCCCCCCCCCCCCCCccccccccchhhH
Q 008300 174 VFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNT-RTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLEL 252 (570)
Q Consensus 174 vFEttIRvLGGLLSAY~LSgd~~lL~KA~dLadrLLpAFdT-ptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF 252 (570)
+.+-..=+.=.|+..|..++|+.+++.|+++.++++..|.. +.|.+. ...+....+.|..|.+- +.+=+
T Consensus 137 ~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~wchG~aG------i~~~l 206 (321)
T cd04791 137 LLHGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQ----VDEGARLLPYLCSGSAG------LGLLM 206 (321)
T ss_pred cccCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCCCceE----cCCCCccCcccCCCcHH------HHHHH
Confidence 33433334445778899999999999999999999888864 344322 12222223345444432 33557
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHhhc
Q 008300 253 IALSQRTGDPKYRQKAEKVIVELNKT 278 (570)
Q Consensus 253 ~~LS~lTGd~kY~~~a~~i~~~L~~~ 278 (570)
.+|.+.|+|++|.+.++++.+.+.+.
T Consensus 207 ~~l~~~~~d~~~~~~a~~~~~~~~~~ 232 (321)
T cd04791 207 LRLEAITGDKRWRDEADGIAHAALSS 232 (321)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhh
Confidence 78999999999999999999998764
No 24
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=90.82 E-value=4 Score=46.21 Aligned_cols=224 Identities=22% Similarity=0.315 Sum_probs=128.0
Q ss_pred chHHHHHHHHHHHHhhcCCCCCCcceEecCCCCCCC--CCeeeecccCchHHHHHHHHHHhcCCCCCcccccHHHHHHHH
Q 008300 262 PKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPS--YSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYSRDMWETSM 339 (570)
Q Consensus 262 ~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~--~~~~t~Ga~~DSfYEYLLK~~iL~g~~d~~~~~~~~~y~~A~ 339 (570)
..|.+.|++.+-+-++..-..+.--+-+.|-||... +..=++|...-..-+-|--..+|++ +.-|++|+
T Consensus 31 ~~~Re~vr~MFyhayDnYm~hAFP~DEL~PltC~g~~~~~~D~~G~ysLtLIDaLdTLailGn---------~~eF~raV 101 (622)
T KOG2429|consen 31 KQYREEVREMFYHAYDNYMEHAFPYDELKPLTCVGRGPGVNDTLGSYSLTLIDALDTLAILGN---------RTEFQRAV 101 (622)
T ss_pred HHHHHHHHHHHHHhhhhHhhccCCccccCcceecCCCCCccccccccchhhHHHhhHHHHhCC---------hHHHHHHH
Confidence 568888888888877732222222233344444442 2234556555555555655666665 45679999
Q ss_pred HHHHHhhcccCCCCCeeeeccCCCcccccccccccccchhhh---hhcCC----C-CCCCchHHHHHHHHHHHHHHHhhh
Q 008300 340 KGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIA---LGSSG----Y-GPGDSEKFLSLAEELAWTCYNFYQ 411 (570)
Q Consensus 340 ~~i~~ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmla---LG~~~----~-~~~~~~~~l~lA~~L~~tC~~~y~ 411 (570)
+-+.+.+........ -|=|.+- =-+||+|. ++.+. + ..+=.-+.|.+|+++++----.+.
T Consensus 102 ~lv~~~~~Fd~d~~V-qVFEttI-----------RVlGGLLSAHllA~~~~~~~~~~~~y~g~LLrLA~dlA~RLLPAF~ 169 (622)
T KOG2429|consen 102 RLVIETVSFDIDSTV-QVFETTI-----------RVLGGLLSAHLLAKKDPVGVFLGPDYDGELLRLAEDLARRLLPAFE 169 (622)
T ss_pred HHHHhhCCcccCCee-EEEEEeh-----------hhhhhHHHHHHhhccCccCccccCCCCchHHHHHHHHHHhhccccc
Confidence 988875543211111 1111110 01233332 11000 0 001134789999999998888887
Q ss_pred cCCCCccceeEeecCCCc---cc----cccCCCCCchhHHHHHHhHHhhcCCchHHHHHHHHHHHHHHhcccCcCccc-c
Q 008300 412 STPTKLAGENYFFRDGQD---MS----VGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVG-L 483 (570)
Q Consensus 412 ~t~tGl~PE~~~f~~~~~---~~----~~~~~y~LRPE~IESlfyLyR~TgD~~Yre~gW~if~ai~~~~r~~~Gya~-i 483 (570)
||||+.=-.++...|-. .. .+-...+ +| .=.|=|+||||+|-+.|...+.++=+ .|.+-|--| .
T Consensus 170 -T~TGiPy~~vNLk~GV~~~Et~~tctAg~gsll-----lE-Fg~LSrLTGD~~fE~vA~~A~~~lW~-~RS~igLlGn~ 241 (622)
T KOG2429|consen 170 -TPTGIPYGRVNLKYGVDKGETTETCTAGAGSLL-----LE-FGTLSRLTGDPKFEKVARRALDALWS-LRSGIGLLGNH 241 (622)
T ss_pred -CCCCCCcceeehhcCCCCCCCcceeccccccee-----ee-hhhhHHhhCCcHHHHHHHHHHHHHHh-hcCCCCcccce
Confidence 89999877777765522 00 1111221 11 12467999999999999999998865 466666433 3
Q ss_pred ccCCCCCC-------CCCcchHHHHHHHHHHHHhcCCCCc
Q 008300 484 KDVNTGDK-------DNMMQSFFLAETLKYLYLLFSPTTV 516 (570)
Q Consensus 484 ~dV~~~~~-------~D~meSFflaETLKYLYLLFsd~~~ 516 (570)
-||.+++. .--..||| |-|===|.||.|++.
T Consensus 242 idV~tG~W~~~~sGIGAgiDSfy--EYllK~yILfgd~e~ 279 (622)
T KOG2429|consen 242 IDVQTGEWTAPDSGIGAGIDSFY--EYLLKGYILFGDPEL 279 (622)
T ss_pred eeccccceeccccccccchHHHH--HHHHHHheecCCHHH
Confidence 47876542 35567876 444445788888754
No 25
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.60 E-value=0.54 Score=52.46 Aligned_cols=73 Identities=22% Similarity=0.353 Sum_probs=56.6
Q ss_pred hccccceeeccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhC
Q 008300 181 VVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTG 260 (570)
Q Consensus 181 vLGGLLSAY~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTG 260 (570)
.+-|++.+|.+||-..+|+-+..+||.+-.-|+--++ -+.|. ++=+-+-|.+..|.++||
T Consensus 136 Lieg~va~~qaTGkr~lldV~~rlADhi~tvfgp~~~-------q~~g~-------------~gH~eielAl~~Ly~~Tg 195 (589)
T COG3533 136 LIEGGVAAHQATGKRRLLDVVCRLADHIATVFGPEED-------QVPGY-------------CGHPEIELALAELYRLTG 195 (589)
T ss_pred HHhhhhHHHHhhCcchHHHHHHHHHHhhhhhcCcccc-------ccccc-------------cCCCchhHHHHHHHHHhc
Confidence 4678999999999999999999999999888873222 11222 233445566899999999
Q ss_pred CchHHHHHHHHHH
Q 008300 261 DPKYRQKAEKVIV 273 (570)
Q Consensus 261 d~kY~~~a~~i~~ 273 (570)
|++|.+.|.+.+.
T Consensus 196 ~~rYL~LA~~Fi~ 208 (589)
T COG3533 196 DQRYLDLARRFIH 208 (589)
T ss_pred ChHHHHHHHHHHH
Confidence 9999999987554
No 26
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=89.59 E-value=8.8 Score=45.80 Aligned_cols=239 Identities=23% Similarity=0.277 Sum_probs=132.1
Q ss_pred cccccchhhhhccccceeeccCC--------------------------------ChHHHHHHHHHHHHHhhcc------
Q 008300 171 DASVFETTIRVVGGLLSAYDLSG--------------------------------DKVFLEKARDIADRLLPAW------ 212 (570)
Q Consensus 171 ~VsvFEttIRvLGGLLSAY~LSg--------------------------------d~~lL~KA~dLadrLLpAF------ 212 (570)
+.|.|+..|-.+++|... ||.. ..-|++.|.++||-|+.--
T Consensus 541 ~tS~fd~vi~~l~~lg~e-dl~rQl~iI~~s~~s~~~~~~~~~~~l~l~~~~ti~~e~~v~~a~~ige~i~~~~I~g~~~ 619 (963)
T COG4403 541 QTSLFDFVIGSLDQLGVE-DLERQLYIIKISFISVKINKRKPVNFLNLSSKHTIDNEYFVSIANDIGEHIIKQLIIGVDD 619 (963)
T ss_pred hhhhHHHHHHhhhccChh-HHHHhHHHhhhhhhhhhhcccCcccccCccccccccHHHHHHHHHHHHHHHHHHHhccccC
Confidence 467788888888877543 2221 2469999999999987521
Q ss_pred -cC-CCCCCcceeecCCCCCCCCCCCC---CCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCCCCCCcce
Q 008300 213 -NT-RTGIPYNVINLAHGNPHNPSWTG---GESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPADGLLPI 287 (570)
Q Consensus 213 -dT-ptGiP~~~vNl~~g~~~~~~~~~---~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~~~GL~p~ 287 (570)
.+ -.|||+. + .| .+|.- +...--...-+.|=|.+|..+||...|.+.|.++...+.+.... .|.|.
T Consensus 620 ~~~~~~~is~~---~-~g----~~~~lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y~~ia~~~L~~~~~sv~~-~~~~~ 690 (963)
T COG4403 620 FETSLIWISTT---F-EG----QGWSLSPLGNDLYDGSAGIALFFAYLALVTGKDYYKEIAIKALQDSRKSVNN-NLNPI 690 (963)
T ss_pred CcceEEEEEee---e-cc----ceEEeecCCchhhcCcchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhhh-ccCCc
Confidence 11 1133321 1 11 22210 11111112234577999999999999999999999998885433 34442
Q ss_pred EecCCCCCCCCCeeeecccCc-hHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcccCCCCCeeeeccCCCccc
Q 008300 288 YISPDRGTPSYSTITFGAMGD-SFYEYLLKVWIQGNKTSAVKPYSRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLI 366 (570)
Q Consensus 288 ~id~~tg~~~~~~~t~Ga~~D-SfYEYLLK~~iL~g~~d~~~~~~~~~y~~A~~~i~~ll~~~~~~~~~~v~~~~g~~~~ 366 (570)
. .|.+ .|+ ||+--|.|-+.++++.. . ..-+.+.+.++......+.. ..|++.
T Consensus 691 ~----iga~---------~G~~g~~yal~~I~~~~~~~~----l-~~~~~~~i~~le~~v~~~~~--~d~i~G------- 743 (963)
T COG4403 691 N----IGAF---------TGLSGYFYALWKIYSVTRDNY----L-IQSAENSIRHLEILVQKSKD--PDFING------- 743 (963)
T ss_pred c----cccc---------cccchhhhhhHHHHHhcccHH----H-HHHHHHHHHHHHHHHhhccC--cchhhc-------
Confidence 1 1222 133 45455667777777543 1 23333334444333333221 112211
Q ss_pred ccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhhcCCCCccceeEeecCCCccccccCCCCCchhHHHH
Q 008300 367 DKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVES 446 (570)
Q Consensus 367 ~~m~hLsCF~pGmlaLG~~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~LRPE~IES 446 (570)
.+|-..+|-+- +..-+.++.+++|..+.+.|++.-...-+ .+ . +-.| .--.---+|=+
T Consensus 744 --------l~g~i~~L~~i-Yk~~~epk~l~~ais~~~~l~~~~v~~d~--s~-~--~l~g--------fshg~sgi~~t 801 (963)
T COG4403 744 --------LAGVICVLVSI-YKLTDEPKFLELAISLGRILMEKIVGNDS--SE-T--VLLG--------FSHGASGIILT 801 (963)
T ss_pred --------cHHHHHHHHHH-HhhccchHHHHHHHHHHHHHHHHhhcccc--cc-c--eecc--------cccchHHHHHH
Confidence 12222233221 22224679999999999999854322111 11 1 1111 11122347778
Q ss_pred HHhHHhhcCCchHHHHHHHHHH
Q 008300 447 LFYLWRLTGNKTYKEWGWNIFQ 468 (570)
Q Consensus 447 lfyLyR~TgD~~Yre~gW~if~ 468 (570)
+-=+|.+|||+++...+-+.+.
T Consensus 802 L~~ly~~T~e~~l~~~i~e~~~ 823 (963)
T COG4403 802 LLKLYEATGEESLLKKIKELLS 823 (963)
T ss_pred HHHHHHhcCcHHHHHHHHHHHH
Confidence 8889999999999999988763
No 27
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=89.49 E-value=24 Score=41.89 Aligned_cols=232 Identities=14% Similarity=0.139 Sum_probs=120.4
Q ss_pred eeccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchHHHH
Q 008300 188 AYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQK 267 (570)
Q Consensus 188 AY~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~ 267 (570)
.|..++|+.+.+.|+++.+.+....+... .. .. ..+.....+.+.+=+..|++.|++++|.+.
T Consensus 503 l~~~t~~~~~~~~a~~~l~~l~~~~~~~~---~~--------~~------~~gl~~G~aGi~~~L~~l~~~~~~~~~~~~ 565 (825)
T cd04792 503 LGQLTGDERYTRLARKILDSLVKSLSELK---TD--------DT------GIGAFSGLGGILYALTHLGKLLKDDRLLNL 565 (825)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHhccc---cc--------cc------CceeEechhHHHHHHHHHHHHcCCHHHHHH
Confidence 35667788899999999888876654321 00 00 112233444555667889999999999999
Q ss_pred HHHHHHHHhhcCCCCCCcceEecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhc
Q 008300 268 AEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYSRDMWETSMKGLLSLVR 347 (570)
Q Consensus 268 a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfYEYLLK~~iL~g~~d~~~~~~~~~y~~A~~~i~~ll~ 347 (570)
|.++.+.+....... . ...+=.+.-+.-=+|+..|-.+++.. + .+.-.++.+.+.+...
T Consensus 566 a~~~~~~l~~~~~~~---------~-------~~D~~~G~aGii~~Ll~l~~~~~~~~----~-l~~a~~~~~~l~~~~~ 624 (825)
T cd04792 566 AKEILDLIDELIEKD---------E-------KLDFISGAAGLILVLLSLYELFLSER----F-LDLALKCGDHLLENAS 624 (825)
T ss_pred HHHHHHHHHHhhccc---------c-------CCCEeeecHHHHHHHHHHHhccCChH----H-HHHHHHHHHHHHHhhh
Confidence 999998876532110 0 01111111223345677776665422 3 3333333333322111
Q ss_pred ccCCCCCeeeeccCCCccccc-ccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhhcCCCCccceeEeecC
Q 008300 348 RSTPSSFTYICEKNGDSLIDK-MDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRD 426 (570)
Q Consensus 348 ~~~~~~~~~v~~~~g~~~~~~-m~hLsCF~pGmlaLG~~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~ 426 (570)
. ...+. + . .+...... ..-.+..+-.++.+... .+.+++++.|.++.+.+...+... ...|..
T Consensus 625 ~-~~~~~-~-~--~~~~~~~G~aHG~sGi~~aL~~l~~~----~~d~~~~~~a~~~l~~~~~~~~~~-------~~~w~~ 688 (825)
T cd04792 625 N-EDGGI-G-P--AEQPNLTGFAHGASGIAWALLRLYKV----TGDSRYLKLAHKALKYERRLFSEE-------GWNWPR 688 (825)
T ss_pred h-ccCCc-c-c--ccccccccccccHHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHHHhcCHh-------hcCCCC
Confidence 1 11111 1 0 00000001 11111111112222221 135678888877776554433221 111111
Q ss_pred CCccccccCCCCCchhHHHHHHhHHhh--cCCchHHHHHHHHHHHHHHh
Q 008300 427 GQDMSVGTSWNILRPETVESLFYLWRL--TGNKTYKEWGWNIFQAFEKN 473 (570)
Q Consensus 427 ~~~~~~~~~~y~LRPE~IESlfyLyR~--TgD~~Yre~gW~if~ai~~~ 473 (570)
.........|----|=++-++..++++ ++|+.+.+.+-++.+.+.+.
T Consensus 689 ~~~~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~ 737 (825)
T cd04792 689 KDGNSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKE 737 (825)
T ss_pred cCcCCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHh
Confidence 111122345666778889999999999 79999999988888877654
No 28
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=88.94 E-value=30 Score=35.47 Aligned_cols=253 Identities=13% Similarity=0.116 Sum_probs=130.4
Q ss_pred cceeeccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchH
Q 008300 185 LLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKY 264 (570)
Q Consensus 185 LLSAY~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY 264 (570)
|+..|..++++.+.+.|.+..+.+....+.... .. .+.....+.+..=+..+++.++|+++
T Consensus 11 l~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~----------------~~~~~G~~Gi~~~l~~l~~~~~~~~~ 71 (343)
T cd04434 11 LLELYRVTPDEKYQDLAHKALEYIVKSLSSLPD---TD----------------ISLFSGLAGIAYALAALSKGLGDQEL 71 (343)
T ss_pred HHHHHhccCCccHHHHHHHHHHHHHHHHHhCCC---CC----------------eeeecchHHHHHHHHHHHHHcCCHHH
Confidence 445677788999999999988888776553211 01 12223334444556788889999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcceEecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHH
Q 008300 265 RQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYSRDMWETSMKGLLS 344 (570)
Q Consensus 265 ~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfYEYLLK~~iL~g~~d~~~~~~~~~y~~A~~~i~~ 344 (570)
.+.+.++++.+.+....+ .+ .....+-.+.-+.-=+|+..+-.+++.. + .+.-.+..+.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~------~~-------~~~~d~~~G~aG~~~~ll~~~~~~~~~~----~-~~~~~~~~~~l~~ 133 (343)
T cd04434 72 LKELLELLLLLVELILED------LK-------DLNYDLLSGLAGLLLALLLLYKTFGEEI----F-LELIRKILDYLLE 133 (343)
T ss_pred HHHHHHHHHHhhhhhhcc------cC-------CCCcceeechHHHHHHHHHHHHhcCCcC----H-HHHHHHHHHHHHH
Confidence 999999988887642211 00 1112222222344456666665554332 3 4455555555554
Q ss_pred hhcccCCCCCeeeeccCCCcccccccccccc---cchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhhcCCCCcccee
Q 008300 345 LVRRSTPSSFTYICEKNGDSLIDKMDELACF---APGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGEN 421 (570)
Q Consensus 345 ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF---~pGmlaLG~~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~ 421 (570)
...... .+.........+ ....-| ++|....=.......+.+...++++.+...+.+.+.. ..+.-+..
T Consensus 134 ~~~~~~-~~~~~~~~~~~~------~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 205 (343)
T cd04434 134 LGKNGD-GKIRWPMYFPEG------RVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQDD-SGGFWWPS 205 (343)
T ss_pred hhhhcc-CCCceeeeccCC------ccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHccCC-CCCCCCCC
Confidence 332211 111110000000 011111 2222221111000012334555555555544433322 22222210
Q ss_pred EeecCCCccccccCCCCCchhHHHHHHhHHhhcCCchHHHHHHHHHHHHHHhccc---C---c-Ccccccc
Q 008300 422 YFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRI---E---S-GYVGLKD 485 (570)
Q Consensus 422 ~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~TgD~~Yre~gW~if~ai~~~~r~---~---~-Gya~i~d 485 (570)
. ... .......|----|=++-++..++++|+|+++.+.+-++.+.+.+..+. . | |.+|+-+
T Consensus 206 ~--~~~-~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lChG~~G~~~ 273 (343)
T cd04434 206 R--SNG-GNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLLELKNPGLCHGIAGNLL 273 (343)
T ss_pred C--CCC-CccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhccCCCCCcCcCccchHH
Confidence 0 000 012233455566778999999999999999999999888777666542 1 2 6777643
No 29
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=86.83 E-value=1 Score=50.16 Aligned_cols=104 Identities=24% Similarity=0.299 Sum_probs=56.6
Q ss_pred CChHHHHHHHHHHHHHhhcccCC----CCCCcceeecCCCCCCCCCCCC-CCccccccccch---hhHHHHHHHhCCchH
Q 008300 193 GDKVFLEKARDIADRLLPAWNTR----TGIPYNVINLAHGNPHNPSWTG-GESILADSGTEQ---LELIALSQRTGDPKY 264 (570)
Q Consensus 193 gd~~lL~KA~dLadrLLpAFdTp----tGiP~~~vNl~~g~~~~~~~~~-~~s~lAe~GSl~---LEF~~LS~lTGd~kY 264 (570)
.+...|+--++-+|.+|...-.+ |-+-..-+|..++++-...++. .+..++-+.|=| ==+..||.+||||+|
T Consensus 11 ~~~~~l~~v~~y~d~vl~~~~d~~~~~TPLlaDG~D~~t~~pV~W~~pDg~~~~iSNfAsQQN~lR~L~~LS~lTgd~~Y 90 (557)
T PF06917_consen 11 QDDERLSAVKQYADNVLQHARDPYENPTPLLADGIDPRTLKPVEWIFPDGRDAPISNFASQQNFLRTLVGLSNLTGDPKY 90 (557)
T ss_dssp ----HHHHHHHHHHHHHHHTB--STS--S-B-SEE-TTT--B-EEE-TTS-EEEEE-GGG-HHHHHHHHHHHHHH--THH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCeeccccccCCCCceEEECCCCCccccccHHHHHHHHHHHHHHHhccCCHHH
Confidence 35678888888888888766433 3333456777777764433333 344455555544 234569999999999
Q ss_pred HHHHHHHHHHHhhc-CCCCCCcc----eEecCCCCCC
Q 008300 265 RQKAEKVIVELNKT-FPADGLLP----IYISPDRGTP 296 (570)
Q Consensus 265 ~~~a~~i~~~L~~~-~~~~GL~p----~~id~~tg~~ 296 (570)
.+.|..+.+..... ....||+= .+||-+|.+.
T Consensus 91 ~q~A~~~~~yfldh~~D~~GL~~WGGHrFi~L~tl~~ 127 (557)
T PF06917_consen 91 QQRAQEIIRYFLDHFVDDSGLFYWGGHRFINLDTLQI 127 (557)
T ss_dssp HHHHHHHHHHHHHHSB-TTS-BS-STT-EEETTT--E
T ss_pred HHHHHHHHHHHHHhccCCCcceeecCceeEecccCCc
Confidence 99999999999885 33447752 5677776553
No 30
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=86.15 E-value=38 Score=35.83 Aligned_cols=266 Identities=18% Similarity=0.169 Sum_probs=135.2
Q ss_pred HHHHHHHHhhcCC-CCCccccccchhhhhccccceeeccCCChHHHHHHHHHHHHHhhcccCC-CCCCcceeecCCCCCC
Q 008300 154 SSEFMWIANSLDF-NKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTR-TGIPYNVINLAHGNPH 231 (570)
Q Consensus 154 ~~A~~~V~~~ldF-~~~~~VsvFEttIRvLGGLLSAY~LSgd~~lL~KA~dLadrLLpAFdTp-tGiP~~~vNl~~g~~~ 231 (570)
+.|++.+...+.. ..+..+++|.-..=++=-|+..|..++|+.+++.|.+.++.++.+...+ ...+
T Consensus 29 ~~a~~~i~~~~~~~~~~~~~~~~~G~aGi~~~l~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 96 (343)
T cd04794 29 SWALEYIKASLRAIPDDRRISFLCGNAGVYAVGAAVYHYLKDEDEVDEFLSKFLQLLESVVSPDSGLP------------ 96 (343)
T ss_pred HHHHHHHHHHHhhcccccCCCccCCcHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhcccCCc------------
Confidence 4556665543322 2245566777666666666778888999999999999999998764221 1000
Q ss_pred CCCCCCCCccccccccchhhHHHHHHHhCCc-hHHHHHHHHHHHHhhc----CCC-CCCcceEecCCCCCCCC-Ceeee-
Q 008300 232 NPSWTGGESILADSGTEQLELIALSQRTGDP-KYRQKAEKVIVELNKT----FPA-DGLLPIYISPDRGTPSY-STITF- 303 (570)
Q Consensus 232 ~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~-kY~~~a~~i~~~L~~~----~~~-~GL~p~~id~~tg~~~~-~~~t~- 303 (570)
. +..-.-+|. .+=+..|-+.|++. ...+.++++.+.+... ... ...+|...+ |.+ ...++
T Consensus 97 -~-----d~l~G~aG~-l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~-----~~~~~~~G~a 164 (343)
T cd04794 97 -D-----ELLYGRAGY-LYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYE-----WHGKEYLGAA 164 (343)
T ss_pred -h-----hhhccHHHH-HHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCcccc-----ccCceecchh
Confidence 0 111112233 33377788888843 3445556655554431 110 011222211 111 01222
Q ss_pred -cccCchHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcccCCCCCe-eeeccCCCcccccccccccc-cchhh
Q 008300 304 -GAMGDSFYEYLLKVWIQGNKTSAVKPYSRDMWETSMKGLLSLVRRSTPSSFT-YICEKNGDSLIDKMDELACF-APGMI 380 (570)
Q Consensus 304 -Ga~~DSfYEYLLK~~iL~g~~d~~~~~~~~~y~~A~~~i~~ll~~~~~~~~~-~v~~~~g~~~~~~m~hLsCF-~pGml 380 (570)
|+.|.-+. |++.+..+++.+ + .+.-.++++-+.+..... .++. ..... . .+...+ -|- .||++
T Consensus 165 HG~aGI~~~--L~~~~~~~~~~~----~-~~~i~~~i~~~~~~~~~~--g~w~~~~~~~--~--~~~~~~-wChG~~Gi~ 230 (343)
T cd04794 165 HGLAGILYI--LLQTPLFLLKPS----L-APLIKRSLDYLLSLQFPS--GNFPSSLGNR--K--RDRLVQ-WCHGAPGIV 230 (343)
T ss_pred hhHHHHHHH--HHhhhhhcCCcc----H-HHHHHHHHHHHHHhhccC--CCCCCccCCC--C--CCcccc-ccCCCchHH
Confidence 33333332 666666555433 4 566666766655542111 1111 11100 0 111112 232 66666
Q ss_pred hhhcCCCCCCCchHHHHHHHHHHHHHHHhhhcCCCCccceeEeecCCCccccccCCCCCchhHHHHHHhHHhhcCCchHH
Q 008300 381 ALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYK 460 (570)
Q Consensus 381 aLG~~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~TgD~~Yr 460 (570)
.+=......-+.+++.+.++...++.++ .|+.-....+-. +... ..+.+..+|+.|+|++|+
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~lCH------G~~G------~~~~lL~~~~~~~~~~~~ 292 (343)
T cd04794 231 YLLAKAYLVFKEEQYLEAAIKCGELIWK------RGLLKKGPGLCH------GIAG------NAYAFLLLYRLTGDLKYL 292 (343)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH------hCCccCCCcccc------Cccc------hHHHHHHHHHHhCcHHHH
Confidence 5311111111245677767666665432 143221112211 2222 578899999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 008300 461 EWGWNIFQAFEKNSR 475 (570)
Q Consensus 461 e~gW~if~ai~~~~r 475 (570)
++|-.+.+.+.+...
T Consensus 293 ~~a~~~~~~~~~~~~ 307 (343)
T cd04794 293 YRACKFAEFLINYGF 307 (343)
T ss_pred HHHHHHHHHHhcchh
Confidence 999999988876643
No 31
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=84.98 E-value=49 Score=33.87 Aligned_cols=274 Identities=17% Similarity=0.118 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHhhcCCCCCccccccchhhhhccccceeeccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCC
Q 008300 151 YSFSSEFMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNP 230 (570)
Q Consensus 151 eEF~~A~~~V~~~ldF~~~~~VsvFEttIRvLGGLLSAY~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~ 230 (570)
+...++++++.+.++-......++|.-..-++=.|+-.|...+|+.+++.+.++++.+......+.. .
T Consensus 25 ~~~~~~~~~i~~~~~~~~~~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 92 (343)
T cd04434 25 DLAHKALEYIVKSLSSLPDTDISLFSGLAGIAYALAALSKGLGDQELLKELLELLLLLVELILEDLK------------D 92 (343)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeeeecchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhcccC------------C
Confidence 3345666776654432222345666655444444555666678999999999999988764432200 0
Q ss_pred CCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCCC--CCCcceEecCCCCCCCCCeeeecccCc
Q 008300 231 HNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPA--DGLLPIYISPDRGTPSYSTITFGAMGD 308 (570)
Q Consensus 231 ~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~~--~GL~p~~id~~tg~~~~~~~t~Ga~~D 308 (570)
.+.. .+.....+.+=+..+.+.|+++.+.+.+.++.+.|.+.... .+......+. .+ ....-+.-|..|
T Consensus 93 ~~~d------~~~G~aG~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~-~~~~g~~HG~~G- 163 (343)
T cd04434 93 LNYD------LLSGLAGLLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPMYFP-EG-RVNLGLAHGLAG- 163 (343)
T ss_pred CCcc------eeechHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhhhccCCCceeeecc-CC-ccccchhhhhHH-
Confidence 0111 12222223344557778889999999999999999874321 1111110010 11 111112223333
Q ss_pred hHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcccCCCCCeeeeccCCCcccccccccccc-cchhhhhhcCCC
Q 008300 309 SFYEYLLKVWIQGNKTSAVKPYSRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACF-APGMIALGSSGY 387 (570)
Q Consensus 309 SfYEYLLK~~iL~g~~d~~~~~~~~~y~~A~~~i~~ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF-~pGmlaLG~~~~ 387 (570)
.-=.|++.+..+++ +.+ .+.-+.++.-..+..... .+...-..... -...+.. =|- .+|++..=....
T Consensus 164 -i~~~l~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~-wChG~~Gi~~~l~~~~ 232 (343)
T cd04434 164 -ILLALLLLYKKTVD----KSL-EALIKALLKYERRLQDDS--GGFWWPSRSNG--GNRFLVA-WCHGAPGILLALLLAY 232 (343)
T ss_pred -HHHHHHHHHHhcCC----hhH-HHHHHHHHHHHHHccCCC--CCCCCCCCCCC--Cccccce-ecCCChhHHHHHHHHH
Confidence 33456666655532 223 333333333333221111 11100000000 0011111 132 455443211111
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhhcCCCCccceeEeecCCCccccccCCCCCchhHHHHHHhHHhhcCCchHHHHHHHHH
Q 008300 388 GPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIF 467 (570)
Q Consensus 388 ~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~TgD~~Yre~gW~if 467 (570)
..-+.+.+.+.+++..+.+++..... .... ..----.=+++.+..+++.|+|++|++.+-.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------------~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~ 295 (343)
T cd04434 233 KALGDDKYDEAAEKALELAWKRGLLE-----LKNP------------GLCHGIAGNLLILLLLYKLTGDLKFLARALALA 295 (343)
T ss_pred HHcCcHHHHHHHHHHHHHHHHhhhcc-----CCCC------------CcCcCccchHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 11123456666666555554332210 0111 111222237888999999999999999998887
Q ss_pred HHHHHh
Q 008300 468 QAFEKN 473 (570)
Q Consensus 468 ~ai~~~ 473 (570)
+.+...
T Consensus 296 ~~~~~~ 301 (343)
T cd04434 296 LLLISH 301 (343)
T ss_pred HHHHHH
Confidence 755543
No 32
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=82.05 E-value=1.7 Score=46.89 Aligned_cols=139 Identities=26% Similarity=0.369 Sum_probs=75.4
Q ss_pred eccCCChHHHHHHHHHHHHHhh-cc-cCCCCCCcceeecCCC--CCCCCCCCCCCccccccccchhhHHHHHHHhCCc-h
Q 008300 189 YDLSGDKVFLEKARDIADRLLP-AW-NTRTGIPYNVINLAHG--NPHNPSWTGGESILADSGTEQLELIALSQRTGDP-K 263 (570)
Q Consensus 189 Y~LSgd~~lL~KA~dLadrLLp-AF-dTptGiP~~~vNl~~g--~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~-k 263 (570)
|..++|+.+|++|+.+-|.+.- -+ |+.+|+-+..++.... ......| +--.|+++-=...|.+.|++. +
T Consensus 168 ~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~------TYNqG~~l~a~~~Ly~~T~~~~~ 241 (370)
T PF03663_consen 168 YRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKW------TYNQGVFLGAAAYLYNATNDEQT 241 (370)
T ss_dssp HHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---------HHHHHHHHHHHHHHHHHH--H-H
T ss_pred HHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCcee------chHHHHHHHHHHHHHHhcCCccH
Confidence 4567899999999999999887 44 5777988888866641 1112223 334577777788999999887 9
Q ss_pred HHHHHHHHHHHHhhc-CCC-CCCcceEecCCCCCCCCCeeeecccCc----hHHHHHHHHHHhcCCCCCcccccHHHHHH
Q 008300 264 YRQKAEKVIVELNKT-FPA-DGLLPIYISPDRGTPSYSTITFGAMGD----SFYEYLLKVWIQGNKTSAVKPYSRDMWET 337 (570)
Q Consensus 264 Y~~~a~~i~~~L~~~-~~~-~GL~p~~id~~tg~~~~~~~t~Ga~~D----SfYEYLLK~~iL~g~~d~~~~~~~~~y~~ 337 (570)
|.+.|+++.+...+. ... .|.+... .|+.. -.-+...- =|..||.+.....+... +.| .+...+
T Consensus 242 yl~~A~~la~~~~~~~~~~~~gil~e~----~ce~~---~~~~~d~~~Fkgi~~r~L~~l~~~~~~~~--~~~-~~~l~~ 311 (370)
T PF03663_consen 242 YLDRAEKLADAAINHFFDNGDGILTEE----ACEPS---GTCDGDQPLFKGIFARYLADLAQVAPDTA--DTY-RDFLRK 311 (370)
T ss_dssp HHHHHHHHHHHHHHHHEETT--EE-----------------SSSGGGGHHHHHHHHHHHHHHHHT-----HHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCeeeecc----ccccC---cCcCCccHHHHHHHHHHHHHHHHHCcchH--HHH-HHHHHH
Confidence 999999999999874 222 2333222 11110 00111111 15688888888776433 345 555555
Q ss_pred HHHHHH
Q 008300 338 SMKGLL 343 (570)
Q Consensus 338 A~~~i~ 343 (570)
.++++-
T Consensus 312 ~a~~a~ 317 (370)
T PF03663_consen 312 NADAAW 317 (370)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 33
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=81.22 E-value=0.81 Score=51.00 Aligned_cols=140 Identities=22% Similarity=0.298 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhHhhccCch--hhhHHHHhcCCCCCChhHHHHHHHHHHhhcCCCCC------cc-ccccchhhhhccccc
Q 008300 116 KDAMIHAWSSYEKYAWGQD--ELQLLYSMCLFWRISDYSFSSEFMWIANSLDFNKS------YD-ASVFETTIRVVGGLL 186 (570)
Q Consensus 116 k~aF~haw~~Y~k~Awg~D--EL~PL~IMgl~~~~~~eEF~~A~~~V~~~ldF~~~------~~-VsvFEttIRvLGGLL 186 (570)
.+--...-++|.+|||--+ |++|||-=|- + + ....|..| ++ ..-+...--+|=-++
T Consensus 330 l~W~i~gL~a~~~yAYd~~~N~~~PM~~dG~-----d---------l-tgy~l~RdGYYG~KGtvl~~~p~~~~yll~~v 394 (557)
T PF06917_consen 330 LTWAIDGLKAYYRYAYDEENNEIRPMWNDGQ-----D---------L-TGYRLPRDGYYGKKGTVLKPFPADPDYLLPYV 394 (557)
T ss_dssp HHHHHHHHHHHHHHHEETTTTEE--EETTSE-----B-----------TTEE-SS-BTTB-TT-EE--EE--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCceeecccCCc-----C---------C-cCcccccccccCCCCCeeccccCchhHhHHHH
Confidence 3333445667788888654 7999887775 1 1 12445444 23 455677777777889
Q ss_pred eeeccCCChHHHHHHHHHHHHH-hhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchHH
Q 008300 187 SAYDLSGDKVFLEKARDIADRL-LPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYR 265 (570)
Q Consensus 187 SAY~LSgd~~lL~KA~dLadrL-LpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~ 265 (570)
-||.+|+|+.|-..|..++.+. |-...+++|-. +.+|..+.. ++ --+.+-...|.+.|++++|.
T Consensus 395 ra~~~s~D~~Lw~~~~~m~~~~gLGdig~~~~~~-~~~~~~~~~-------------~s-p~~L~allEL~~atq~~~~l 459 (557)
T PF06917_consen 395 RAYRLSRDPELWDLARTMAHHFGLGDIGNAAGKE-PRVNMQTDN-------------AS-PYLLFALLELYQATQDARYL 459 (557)
T ss_dssp HHHHHS--HHHHHHHHHHHHHTT-EE-TTBTTBS--EE-TT-------------------HHHHHHHHHHHHHH--HHHH
T ss_pred HHHHcCCCHHHHHHHHHHHhhcCcccccCccccc-cccccCCCC-------------CC-HHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999998875 33344444432 223333221 11 11345678899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCc
Q 008300 266 QKAEKVIVELNKTFPADGLL 285 (570)
Q Consensus 266 ~~a~~i~~~L~~~~~~~GL~ 285 (570)
+.|+++-+.|.++.-..|||
T Consensus 460 ~lA~~~g~~l~~~~~~~GlF 479 (557)
T PF06917_consen 460 ELADQVGENLFEQHFHRGLF 479 (557)
T ss_dssp HHHHHHHHHHHHHHEETTEE
T ss_pred HHHHHHHHHHHHHHccCcee
Confidence 99999999999976667775
No 34
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=80.20 E-value=17 Score=39.21 Aligned_cols=202 Identities=16% Similarity=0.232 Sum_probs=116.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccc-cccccchhhHHHH-HHHhCCchHHHH
Q 008300 190 DLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESIL-ADSGTEQLELIAL-SQRTGDPKYRQK 267 (570)
Q Consensus 190 ~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~l-Ae~GSl~LEF~~L-S~lTGd~kY~~~ 267 (570)
.++|+++|-+||+.--|.|---=.-.+.+--..||..+|. |+..++.+ |.+-|. -|+.-= --+.||..|.+.
T Consensus 199 ~~tg~~ifee~arkaldflwekr~rss~l~g~~inihsgd-----w~rkdsgigagidsy-yey~lkayillgddsfldr 272 (587)
T KOG2430|consen 199 RFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGD-----WTRKDSGIGAGIDSY-YEYLLKAYILLGDDSFLDR 272 (587)
T ss_pred hccCChhhHHHHHHHHHHHHHHhcccccccceeEEeccCc-----ceecccCcCcchHHH-HHHHHHHhheeccHHHHHH
Confidence 5789999999999999998554444555666678887763 65555533 445554 344333 346799999999
Q ss_pred HHHHHHHHhhcCCCCCCcceEecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhc
Q 008300 268 AEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYSRDMWETSMKGLLSLVR 347 (570)
Q Consensus 268 a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfYEYLLK~~iL~g~~d~~~~~~~~~y~~A~~~i~~ll~ 347 (570)
-.+-+++|.+--... |.++|+.--++.-..- +-.|+..-+..-.-+|-|+.. + . -+|.+...+-|++|-.
T Consensus 273 fn~hydai~ryi~k~---pi~ldvhihkp~l~ar---~~mdallaf~pglqvlkgdik--~-a-ie~heml~qvikkh~f 342 (587)
T KOG2430|consen 273 FNKHYDAIKRYINKG---PIFLDVHIHKPMLAAR---GFMDALLAFFPGLQVLKGDIK--E-A-IEMHEMLFQVIKKHKF 342 (587)
T ss_pred HHHHHHHHHHHhcCC---CeEEEEecccchhhHh---hHHHHHHHhCcchhhhccccH--H-H-HHHHHHHHHHHHHccc
Confidence 999999998832221 4566655444332111 112343333333345666643 2 3 5777777777777432
Q ss_pred ccCCCCCeeeeccCCCcccccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhhcCCCCcc
Q 008300 348 RSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLA 418 (570)
Q Consensus 348 ~~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLG~~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~ 418 (570)
-+..--..|---+..-.+++.+-.-+.|+ - ..-..+-|++.|+.|++.. +-|...|.|.+
T Consensus 343 lpeaft~df~vhwaehpirpefaestyfl------y----kat~dp~yl~v~k~iidni-nkyakvpcgfa 402 (587)
T KOG2430|consen 343 LPEAFTHDFQVHWAEHPIRPEFAESTYFL------Y----KATGDPHYLEVAKQIIDNI-NKYAKVPCGFA 402 (587)
T ss_pred ChHhhcccceeecccCCCChhhhhhheee------e----cccCCchHHHHHHHHHHHH-hhheeCCchHH
Confidence 11100011111122233444443333332 1 1123468999999999875 45667777754
No 35
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=78.03 E-value=71 Score=36.96 Aligned_cols=265 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred hhccCchhhhH---HHHhcCCCCCChhHHHHHHHHHHhhcCCCCCcccccc--------ch-------hhhhccccceee
Q 008300 128 KYAWGQDELQL---LYSMCLFWRISDYSFSSEFMWIANSLDFNKSYDASVF--------ET-------TIRVVGGLLSAY 189 (570)
Q Consensus 128 k~Awg~DEL~P---L~IMgl~~~~~~eEF~~A~~~V~~~ldF~~~~~VsvF--------Et-------tIRvLGGLLSAY 189 (570)
.++|+.|-..- |..+|. .++-.++.+|+.+ .-.......+.+ -+ +-.+|=++-.-|
T Consensus 293 ~y~W~RD~~~~a~Al~~~G~-----~~~a~~~l~~l~~-~q~~~G~~~~~~~~dG~~~~~~~~~Q~D~~g~~l~al~~y~ 366 (616)
T TIGR01577 293 AYCWGRDASYIATALDRAGY-----HDRVDRFFRWAMQ-TQSRDGSWQQRYYLNGRLAPLQWGLQIDETGSILWAMDQHY 366 (616)
T ss_pred ceeccccHHHHHHHHHHCCC-----HHHHHHHHHHHHH-hhCcCCCcceEEecCCCCCCCCCCccccchhHHHHHHHHHH
Q ss_pred ccCCChHHHHHH----HHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCc---
Q 008300 190 DLSGDKVFLEKA----RDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDP--- 262 (570)
Q Consensus 190 ~LSgd~~lL~KA----~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~--- 262 (570)
..++|..+++.- +.+++.+..-.+. ++|.+..++=.-......++......| ......|++..||+
T Consensus 367 ~~t~d~~~~~~~~~~v~~a~~fl~~~~~~--~l~~~~~~lWEer~G~~~~t~a~~~aA-----L~~aa~lA~~lGd~~~a 439 (616)
T TIGR01577 367 RLTNDRAFLEEIWESVQKAAQYLILFIDP--ETPLPCRDLWEEREGVFTYTASAVYGG-----LDAAAAVADKLGEKRLA 439 (616)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHhccC--CCCCCCCccceecCCccCccHHHHHHH-----HHHHHHHHHHcCChHHH
Q ss_pred -hHHHHHHHHHHHHhh--cCCCCCCcceEecCCCCCCCCCeeeecccCchHHHHHHHHHHhcC--CCCCcccccHHHHHH
Q 008300 263 -KYRQKAEKVIVELNK--TFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGN--KTSAVKPYSRDMWET 337 (570)
Q Consensus 263 -kY~~~a~~i~~~L~~--~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfYEYLLK~~iL~g--~~d~~~~~~~~~y~~ 337 (570)
+|.+.|+++.+.+.+ -.+..|.+-..+++.. ..-++.+. |+=..+-+| +.+ -.+...
T Consensus 440 ~~~~~~Ad~ik~~i~~~~w~~~~g~F~~~~~~~~-----~~~~vDaS-------lL~l~~~~g~l~~~------Dpr~v~ 501 (616)
T TIGR01577 440 QNWKKAAEFIKRAVEERFWLPERQVFAKGIKLMV-----LDKTIDIS-------ILGISVPFNLIAPD------DERMVK 501 (616)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCEEEEeecCCC-----CCCcccHH-------HHhHHHhcCCCCCC------ChHHHH
Q ss_pred HHHHHHHhhcccCCCCC-eeee-ccCCCcccccccccccccchhhhhhcCCCCCC---CchHHHHHHHHHHHHHHHhhhc
Q 008300 338 SMKGLLSLVRRSTPSSF-TYIC-EKNGDSLIDKMDELACFAPGMIALGSSGYGPG---DSEKFLSLAEELAWTCYNFYQS 412 (570)
Q Consensus 338 A~~~i~~ll~~~~~~~~-~~v~-~~~g~~~~~~m~hLsCF~pGmlaLG~~~~~~~---~~~~~l~lA~~L~~tC~~~y~~ 412 (570)
.++.|.+.|..+.++++ .|-. .+.++ ...--.++.+.=-++..++..... ....+++-|+++.+.|... .
T Consensus 502 Tv~~I~~~L~~~~~ggi~RY~~D~y~~g---~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~~--~ 576 (616)
T TIGR01577 502 MAEAIEKHLTSPIVGGIKRYENDPYVGG---NPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMDH--R 576 (616)
T ss_pred HHHHHHHHhcccCCCeeeCCCCCCCCCC---CcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHhc--C
Q ss_pred CCCCccceeEeecCCC
Q 008300 413 TPTKLAGENYFFRDGQ 428 (570)
Q Consensus 413 t~tGl~PE~~~f~~~~ 428 (570)
+++|+.||.++-.+|.
T Consensus 577 ~~~Gll~Eqvd~~~g~ 592 (616)
T TIGR01577 577 TDLGLLPEQVDKETGK 592 (616)
T ss_pred CCCCCCccccCCCCCC
No 36
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=77.76 E-value=1.2e+02 Score=33.50 Aligned_cols=256 Identities=14% Similarity=0.132 Sum_probs=156.1
Q ss_pred HHHHHHHHhhcc-----cCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHH
Q 008300 201 ARDIADRLLPAW-----NTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVEL 275 (570)
Q Consensus 201 A~dLadrLLpAF-----dTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L 275 (570)
+.-+-|.+||-| |++.|--+..+... |++..+.-. ..-. ..-..--|...+.+-..+-+.++|.+-++.+
T Consensus 13 ~~~l~~~~lp~w~~~g~d~~~GGffe~l~~d-G~~~~~~~r-r~~~---~~Rqvy~fA~A~~~g~~~~~~~~v~hG~~y~ 87 (388)
T COG2942 13 LRWLDDDALPFWLNAGVDTEGGGFFEALDRD-GQILDETDR-RLRV---QARQVYCFAVAGLLGWRGPWLDAVAHGIAYL 87 (388)
T ss_pred HHHHHHHhhhhhcccCcCCCCCCceeeeccC-CccccCCCc-eeee---ehhHHHHHHHHHHhcCCccHHHHHHhHHHHH
Confidence 344556677755 44555455555443 443331100 0001 1223456777777777888999999999999
Q ss_pred hh-cCCCCCCcceEecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcccCCCCC
Q 008300 276 NK-TFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYSRDMWETSMKGLLSLVRRSTPSSF 354 (570)
Q Consensus 276 ~~-~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfYEYLLK~~iL~g~~d~~~~~~~~~y~~A~~~i~~ll~~~~~~~~ 354 (570)
.+ .+.+.|-+-.-++.+.+ +.+ -|....++.|==.-.-++...|..+ . .+|-..+++-+.+++.+...+-.
T Consensus 88 ~~~~R~~~gg~~~~~~~dg~-~~D--at~d~Y~haFallA~A~~a~a~~~~----a-~~~~~~a~~~l~~~~~~~~~pl~ 159 (388)
T COG2942 88 ARVGRDPEGGWYFALDNDGG-PVD--ATKDLYGHAFALLAAAHAATAGPPR----A-DELLDEALDVLERRFWREEHPLG 159 (388)
T ss_pred HhcCcCCCCCeEEEecCCCC-ccc--ccHhHHHHHHHHHHHHHHHhcCChh----H-HHHHHHHHHHHHHHHhhhcCCcc
Confidence 98 46677777777765543 332 2334444555444445666677654 3 68888999988888765432211
Q ss_pred eeeeccCCC---cccccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhhcCCCCccceeEeecC-----
Q 008300 355 TYICEKNGD---SLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRD----- 426 (570)
Q Consensus 355 ~~v~~~~g~---~~~~~m~hLsCF~pGmlaLG~~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~----- 426 (570)
.|--+..+. ..++.|.-+.+|+..+-+.| ...+++.|.+|++--..=+-...+|+..|.|.-+-
T Consensus 160 ~~e~~~~~~~pl~sNp~MHl~EA~LA~~e~~~--------~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~ 231 (388)
T COG2942 160 GFEEDNPGSAPLGSNPHMHLLEAMLAAYEATG--------EKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHG 231 (388)
T ss_pred cccccCCCCCccCCCcchHHHHHHHHHHhccC--------chhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCC
Confidence 122221111 23456655555665555544 36789999999986655556678999999876321
Q ss_pred --------CCc-------------------------------------------cccccCCCCC--------chhHHHHH
Q 008300 427 --------GQD-------------------------------------------MSVGTSWNIL--------RPETVESL 447 (570)
Q Consensus 427 --------~~~-------------------------------------------~~~~~~~y~L--------RPE~IESl 447 (570)
|.. +.......+. .-|.+++.
T Consensus 232 frg~~~ePGH~fEW~~Lll~~a~~~~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA 311 (388)
T COG2942 232 FRGRGIEPGHQFEWAWLLLDIARRRGRAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAA 311 (388)
T ss_pred cccCCCCCchHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHH
Confidence 100 0000111111 22899999
Q ss_pred HhHHhhcC-CchHHHHHHHHHHHHHHhcccC
Q 008300 448 FYLWRLTG-NKTYKEWGWNIFQAFEKNSRIE 477 (570)
Q Consensus 448 fyLyR~Tg-D~~Yre~gW~if~ai~~~~r~~ 477 (570)
..|.-.|| +..|-+|.-.++..+-.|..++
T Consensus 312 ~ala~~~~~~~~y~~~~~R~~~~~~~hl~d~ 342 (388)
T COG2942 312 VALAETTGARERYWQWYARAWDYLWWHLDDP 342 (388)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999 9999999999999999998874
No 37
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=76.45 E-value=5.8 Score=39.31 Aligned_cols=101 Identities=20% Similarity=0.332 Sum_probs=61.9
Q ss_pred CCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCCCCCCcceEecCCCCCCC------CCeeeec
Q 008300 231 HNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPS------YSTITFG 304 (570)
Q Consensus 231 ~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~------~~~~t~G 304 (570)
..++|. |..|..-.+. =|.+..++|||++|.++|+++++.+.......|..-..-+ .+.|. ...+.+-
T Consensus 22 l~~gW~---SamaQG~a~s-~l~RAy~~t~d~~Yl~aA~~al~~f~~~~~~GG~~~~~~~--~~~wyeEYp~~p~s~VLN 95 (189)
T PF06662_consen 22 LSPGWY---SAMAQGQAIS-VLARAYQLTGDEKYLDAAKKALNSFKVPVEEGGVLATFKN--KYPWYEEYPTTPPSYVLN 95 (189)
T ss_pred CCCCcH---hHHHHHHHHH-HHHHHHHhHCCHHHHHHHHHHHHHhcChHhhCCeeEEecC--CcEeEeecCCCCCCEEee
Confidence 456674 4444432222 2779999999999999999999998764444555444322 13332 2334444
Q ss_pred ccCch---HHHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhh
Q 008300 305 AMGDS---FYEYLLKVWIQGNKTSAVKPYSRDMWETSMKGLLSLV 346 (570)
Q Consensus 305 a~~DS---fYEYLLK~~iL~g~~d~~~~~~~~~y~~A~~~i~~ll 346 (570)
+..-| -|+|- ..+++. .. .++|++.++++++.+
T Consensus 96 GfiysL~GLyd~~----~~~~~~----~A-~~lf~~Gl~sLk~~L 131 (189)
T PF06662_consen 96 GFIYSLIGLYDYY----RLTGDE----EA-KELFDKGLKSLKKML 131 (189)
T ss_pred hHHHHHHHHHHHH----HhcCCH----HH-HHHHHHHHHHHHHHH
Confidence 43333 24444 334433 34 899999999999865
No 38
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=73.68 E-value=13 Score=40.59 Aligned_cols=134 Identities=28% Similarity=0.423 Sum_probs=82.5
Q ss_pred hccccceeeccCCChHHHHHHHHHHHHHhhcc-cCCCCCCc----ceeecCCCCC---CCCC----C-------------
Q 008300 181 VVGGLLSAYDLSGDKVFLEKARDIADRLLPAW-NTRTGIPY----NVINLAHGNP---HNPS----W------------- 235 (570)
Q Consensus 181 vLGGLLSAY~LSgd~~lL~KA~dLadrLLpAF-dTptGiP~----~~vNl~~g~~---~~~~----~------------- 235 (570)
.+-.+|.+|+.++++..+++|.+||+.++.-| |..+|.=. ...|..+|.. .+|+ |
T Consensus 179 l~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~~ 258 (388)
T COG2942 179 LLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWLLLDIARRRGR 258 (388)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCcccCCCCCchHHHHHHHHHHHHHHhch
Confidence 44568999999999999999999999998876 45666532 2223333222 1111 1
Q ss_pred -------------------C--CCCcc--ccccccc---------hhhH----HHHHHHhC-CchHHHHHHHHHHHHhhc
Q 008300 236 -------------------T--GGESI--LADSGTE---------QLEL----IALSQRTG-DPKYRQKAEKVIVELNKT 278 (570)
Q Consensus 236 -------------------~--~~~s~--lAe~GSl---------~LEF----~~LS~lTG-d~kY~~~a~~i~~~L~~~ 278 (570)
. .+..+ +..-|+. |-|. ..|+..|| +.+|.+-..|+.+.++..
T Consensus 259 ~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA~ala~~~~~~~~y~~~~~R~~~~~~~h 338 (388)
T COG2942 259 AWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAAVALAETTGARERYWQWYARAWDYLWWH 338 (388)
T ss_pred hHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 0 00000 1111111 1121 34888899 999999999999999983
Q ss_pred --CCCCCCcceEecCCCCCCCCCeee--ecccCchHHHHHHHHHH
Q 008300 279 --FPADGLLPIYISPDRGTPSYSTIT--FGAMGDSFYEYLLKVWI 319 (570)
Q Consensus 279 --~~~~GL~p~~id~~tg~~~~~~~t--~Ga~~DSfYEYLLK~~i 319 (570)
.+..|++=..+|+++- .+. -++.+..||.-+.-.|.
T Consensus 339 l~d~~~G~W~~~l~~dg~-----~~~~~k~~~~ktfYH~~~A~~~ 378 (388)
T COG2942 339 LDDPEYGLWFDKLDEDGE-----VLLTLKPGPAKTFYHILRACLE 378 (388)
T ss_pred cCCCcCCcchhhcCCCCc-----eecccCCCCcchhHHHHHHHHH
Confidence 4456777666666552 222 35667788876665554
No 39
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=68.51 E-value=1.1e+02 Score=34.23 Aligned_cols=185 Identities=19% Similarity=0.257 Sum_probs=104.8
Q ss_pred CCchHHHHHHHHHHHHhhcCCC-----CCCcceEecCCCCCCCCCeeeeccc-CchHHHHHHHHHHhcCCCCCcccccHH
Q 008300 260 GDPKYRQKAEKVIVELNKTFPA-----DGLLPIYISPDRGTPSYSTITFGAM-GDSFYEYLLKVWIQGNKTSAVKPYSRD 333 (570)
Q Consensus 260 Gd~kY~~~a~~i~~~L~~~~~~-----~GL~p~~id~~tg~~~~~~~t~Ga~-~DSfYEYLLK~~iL~g~~d~~~~~~~~ 333 (570)
|-.-=++++.+++.+-|+..++ +-|-|..- ..- ..+++|.- .|| |--++|++ + .+
T Consensus 90 g~nerq~avv~aF~haW~gYkKyawGhD~l~Pvs~--~~~----d~fglGltiVDs----lDT~~iMg--------l-e~ 150 (546)
T KOG2431|consen 90 GLNERQKAVVDAFLHAWSGYKKYAWGHDELKPVSQ--SFS----DWFGLGLTIVDS----LDTAMIMG--------L-ED 150 (546)
T ss_pred chhHHHHHHHHHHHHHHhhhhhhcccccccccchh--ccc----ccccccceEEec----hhHHHHhh--------h-HH
Confidence 3333468889999999985443 34544421 111 22334433 344 44455654 2 56
Q ss_pred HHHHHHHHHHHhhcccCCCCCeeeeccCCCcccccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhhcC
Q 008300 334 MWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQST 413 (570)
Q Consensus 334 ~y~~A~~~i~~ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLG~~~~~~~~~~~~l~lA~~L~~tC~~~y~~t 413 (570)
-+++|.+=|.+.|........ +-++.---.+||+|. |.+.. ...-+++-|.+|.+-....+ ++
T Consensus 151 e~~ea~~Wv~~~L~f~~~~~V------------NlFEtTIRvLGGLLS--ayHLs--g~~~~L~kA~dlgdrLl~AF-~s 213 (546)
T KOG2431|consen 151 EFEEAREWVEKKLHFEKDRDV------------NLFETTIRVLGGLLS--AYHLS--GDEMFLNKAEDLGDRLLPAF-SS 213 (546)
T ss_pred HHHHHHHHHHhhcccccccce------------ehhhhhHHHHhhhhh--hhccc--cchhHHHHHHHHHHHHHHhh-cC
Confidence 678888888875543322111 111111123566664 22221 13457777777777777777 78
Q ss_pred CCCccceeEeecCCCccccccCCCCCchhHHHH------HHhHHhhcCCchHHHHHHHHHHHHHHhcccC-cCcccc
Q 008300 414 PTKLAGENYFFRDGQDMSVGTSWNILRPETVES------LFYLWRLTGNKTYKEWGWNIFQAFEKNSRIE-SGYVGL 483 (570)
Q Consensus 414 ~tGl~PE~~~f~~~~~~~~~~~~y~LRPE~IES------lfyLyR~TgD~~Yre~gW~if~ai~~~~r~~-~Gya~i 483 (570)
||++.=-.++..+++...+ .|- --.-+.|- .=||=|+|||++|.+.+-+.++.|-+..+.. .|-..|
T Consensus 214 ps~IPysdVnL~~~~A~~p--~~~-~~SStaEvttiQlEfr~Ls~ltgd~kY~~~a~kv~ehih~~~~~~~dGLvPi 287 (546)
T KOG2431|consen 214 PSPIPYSDVNLGTGTAHPP--RWT-GDSSTAEVTTIQLEFRYLSRLTGDPKYEELAEKVTEHIHGLGKKKHDGLVPI 287 (546)
T ss_pred CCCCCcceeecCCCcccCC--CCC-CccchhhheeeeeeHHHHHhhcCCchHHHHHHHHHHHHhccCccccCCeeeE
Confidence 9998777777766543111 000 00112222 1378899999999999999999998876655 365444
No 40
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=68.14 E-value=1.3e+02 Score=32.76 Aligned_cols=158 Identities=23% Similarity=0.273 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHhhcCCCCCccccccchhhhhc-cc--cceeeccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecC
Q 008300 150 DYSFSSEFMWIANSLDFNKSYDASVFETTIRVV-GG--LLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLA 226 (570)
Q Consensus 150 ~eEF~~A~~~V~~~ldF~~~~~VsvFEttIRvL-GG--LLSAY~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~ 226 (570)
.+-++...+|+...++ .++ .-+-+|-.+ -| |+--|+-++|+.+|+.|+++|+.|+.-=-|.-|.-...++
T Consensus 55 ~~yl~~l~~~~d~~i~--~~g---~~~~~id~i~~g~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~-- 127 (357)
T COG4225 55 AEYLDYLKTWFDEQID--EGG---LPPRNIDHIAAGLTLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKVK-- 127 (357)
T ss_pred HHHHHHHHHHHHhhhc--cCC---CCccchhhhccCceeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCccccccC--
Confidence 4555777778865443 233 112222211 12 5566788899999999999999998644455554432221
Q ss_pred CCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhh--cCCCCCCcceEecCCC-CCCCCCeee-
Q 008300 227 HGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNK--TFPADGLLPIYISPDR-GTPSYSTIT- 302 (570)
Q Consensus 227 ~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~--~~~~~GL~p~~id~~t-g~~~~~~~t- 302 (570)
.+ ..-|.. + |=-+|.+ +.++++.||+|.|++-+.+-+..-.+ +.+..||+=.-.|.+. +.|.++..+
T Consensus 128 --~p-~Q~W~D--t-L~Ma~~F---~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~ 198 (357)
T COG4225 128 --YP-HQMWLD--T-LYMAGLF---LAKYGQVTGRPEYFDEALYQFSLHEKYLRDPETGLYYHGWDEDGTMPWANNESGE 198 (357)
T ss_pred --ch-hHhhhc--c-hhhhhHH---HHHHHHHhCCHHHHHHHHHHHHHHHHHccCCCcCceEEeeccCCCCccccccCCC
Confidence 11 122432 2 2223333 67789999999999988887776666 3456799988888765 445443333
Q ss_pred --ecccCchHHHHHH-HHHHhcCC
Q 008300 303 --FGAMGDSFYEYLL-KVWIQGNK 323 (570)
Q Consensus 303 --~Ga~~DSfYEYLL-K~~iL~g~ 323 (570)
|=|++.+.|=+-| +.--+...
T Consensus 199 ~~fWaRg~gW~~mal~d~le~lp~ 222 (357)
T COG4225 199 PAFWARGNGWYAMALADLLELLPE 222 (357)
T ss_pred ceeeecccchHHHHHHHHHHhCCC
Confidence 4456777776544 33334443
No 41
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=64.15 E-value=21 Score=38.20 Aligned_cols=134 Identities=19% Similarity=0.139 Sum_probs=72.4
Q ss_pred eeeccC-CChHHHHHHHHHHHHHhhcccC-CCC--CCcce-----eec--CCCCCCCCCCCCCCccccccccchhhHHHH
Q 008300 187 SAYDLS-GDKVFLEKARDIADRLLPAWNT-RTG--IPYNV-----INL--AHGNPHNPSWTGGESILADSGTEQLELIAL 255 (570)
Q Consensus 187 SAY~LS-gd~~lL~KA~dLadrLLpAFdT-ptG--iP~~~-----vNl--~~g~~~~~~~~~~~s~lAe~GSl~LEF~~L 255 (570)
.+|... .++..++.+++..+.+..-|.. .+| .|... ++. ..+....+.|-.|..-++ +-+..+
T Consensus 183 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~------~~l~~~ 256 (382)
T cd04793 183 LAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIA------RALQLA 256 (382)
T ss_pred HHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHH------HHHHHH
Confidence 344445 6788888888888877766643 222 12111 111 112222344554443222 336677
Q ss_pred HHHhCCchHHHHHHHHHHHHhhcCCCCCCcceEecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcccccHHHH
Q 008300 256 SQRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYSRDMW 335 (570)
Q Consensus 256 S~lTGd~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfYEYLLK~~iL~g~~d~~~~~~~~~y 335 (570)
++.++|+.|.+.+.++++.+.+.....+ +..+..++.+..+ --+.|++.+-.+++.+ + .+..
T Consensus 257 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~lChG~~G-------~~~~l~~~~~~~~~~~----~-~~~a 318 (382)
T cd04793 257 GKALDDQKLQEAAEKILKAALKDKKQLS------KLISPTLCHGLAG-------LLFIFYLLYKDTNTNE----F-KSAL 318 (382)
T ss_pred HHHhCCHHHHHHHHHHHHHHHhChhhhc------cCCCCCcCccHHH-------HHHHHHHHHHHhCCcH----H-HHHH
Confidence 8889999999999999988776321111 1111122322222 2367888888887644 3 4444
Q ss_pred HHHHHHHHH
Q 008300 336 ETSMKGLLS 344 (570)
Q Consensus 336 ~~A~~~i~~ 344 (570)
...++-+.+
T Consensus 319 ~~~~~~~l~ 327 (382)
T cd04793 319 EYLLNQIIS 327 (382)
T ss_pred HHHHHHHHH
Confidence 444444443
No 42
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=60.58 E-value=51 Score=35.65 Aligned_cols=244 Identities=20% Similarity=0.251 Sum_probs=135.9
Q ss_pred ccccceeeccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCC
Q 008300 182 VGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGD 261 (570)
Q Consensus 182 LGGLLSAY~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd 261 (570)
|=|+.-+|+-|+|+.+|+-.+..+|-.+- ..|+|--.||-- .+ | +=+..|.+-|||
T Consensus 42 lyGv~~~~eAT~d~~yl~~l~~~~d~~i~----~~g~~~~~id~i---------------~~--g---~~L~~L~e~T~~ 97 (357)
T COG4225 42 LYGVARAYEATGDAEYLDYLKTWFDEQID----EGGLPPRNIDHI---------------AA--G---LTLLPLYEQTGD 97 (357)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhhhc----cCCCCccchhhh---------------cc--C---ceeeehhhhhCC
Confidence 66899999999999999999999988763 234544333211 11 1 225678999999
Q ss_pred chHHHHHHHHHHHHhhc-CCCCCCcceEecCCCCCCCCCeeeecccCchHH---HHHHHHHHhcCCCCCcccccHHHHHH
Q 008300 262 PKYRQKAEKVIVELNKT-FPADGLLPIYISPDRGTPSYSTITFGAMGDSFY---EYLLKVWIQGNKTSAVKPYSRDMWET 337 (570)
Q Consensus 262 ~kY~~~a~~i~~~L~~~-~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfY---EYLLK~~iL~g~~d~~~~~~~~~y~~ 337 (570)
|+|.++|.+..+.+... +...|-+-..+.---.-|. |+.| =.++|.--++|+.+ .+++
T Consensus 98 ~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~~p~Q~W~----------DtL~Ma~~F~ak~g~~~~~~e--------~~d~ 159 (357)
T COG4225 98 PRYLEAAIKLASWLVHEPRTKEGGFQHKVKYPHQMWL----------DTLYMAGLFLAKYGQVTGRPE--------YFDE 159 (357)
T ss_pred HHHHHHHHHHHHHHhhCcccCCCccccccCchhHhhh----------cchhhhhHHHHHHHHHhCCHH--------HHHH
Confidence 99999999999988873 3445544333221111233 3333 25788888888765 2333
Q ss_pred HHH---HHHHhhcccCCCCCeeeeccCCCcccccccccc---cccc---hhhhh--hcC--CCCCCCchHHHHH---HHH
Q 008300 338 SMK---GLLSLVRRSTPSSFTYICEKNGDSLIDKMDELA---CFAP---GMIAL--GSS--GYGPGDSEKFLSL---AEE 401 (570)
Q Consensus 338 A~~---~i~~ll~~~~~~~~~~v~~~~g~~~~~~m~hLs---CF~p---GmlaL--G~~--~~~~~~~~~~l~l---A~~ 401 (570)
++. ...++++.+ ..++-| ..+......++..+.+ .||+ |-+++ .-. ..+. +.+.-..+ =..
T Consensus 160 ~~~QF~~~~~~l~Dp-~TGL~Y-H~wd~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~-~~~~r~~l~~~l~d 236 (357)
T COG4225 160 ALYQFSLHEKYLRDP-ETGLYY-HGWDEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPE-DHPDRRELLNVLRD 236 (357)
T ss_pred HHHHHHHHHHHccCC-CcCceE-EeeccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCC-CCchHHHHHHHHHH
Confidence 333 233344432 236644 4444443334343333 3443 11111 110 1121 12222222 222
Q ss_pred HHHHHHHhhhcCCCCccceeEeecCCCcccc-cc--CCCCCchhHHHHHHhHHhhcC-------CchHHHHHHHHHHHHH
Q 008300 402 LAWTCYNFYQSTPTKLAGENYFFRDGQDMSV-GT--SWNILRPETVESLFYLWRLTG-------NKTYKEWGWNIFQAFE 471 (570)
Q Consensus 402 L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~-~~--~~y~LRPE~IESlfyLyR~Tg-------D~~Yre~gW~if~ai~ 471 (570)
++.+..+ |++ .+|| |. .+ .+ +.+ =||+==|.-++|-+-. +++|...+.+.+++|.
T Consensus 237 ~v~al~r-~Qd-e~Gl------W~-----tiLDd~~~~s--y~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl 301 (357)
T COG4225 237 LVDALIR-YQD-ESGL------WH-----TILDDGRPGS--YLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALL 301 (357)
T ss_pred HHHHHHH-hhc-cccc------hh-----hhhccCCCCC--chhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Confidence 2222222 222 4444 11 11 12 122 1588889999998876 9999999999999998
Q ss_pred HhcccCc--Ccccccc
Q 008300 472 KNSRIES--GYVGLKD 485 (570)
Q Consensus 472 ~~~r~~~--Gya~i~d 485 (570)
.+.--+. |-.++..
T Consensus 302 ~~i~~~g~~g~vs~~~ 317 (357)
T COG4225 302 GHIDEEGEVGGVSLGT 317 (357)
T ss_pred hhcccccccceeecCc
Confidence 8654332 4444443
No 43
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=58.46 E-value=2.5e+02 Score=29.67 Aligned_cols=234 Identities=15% Similarity=0.052 Sum_probs=115.1
Q ss_pred eecc----CCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCch
Q 008300 188 AYDL----SGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPK 263 (570)
Q Consensus 188 AY~L----Sgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~k 263 (570)
.|.+ ++|+.+++.|.+..+.+... ++. .. ..+.++..+.+.+=+..|.+.|+|++
T Consensus 14 l~~~~~~~~~~~~y~~~a~~~i~~~~~~------~~~-----------~~----~~~~~~G~aGi~~~l~~l~~~~~d~~ 72 (343)
T cd04794 14 LYEVPPLLTNDQTYLSWALEYIKASLRA------IPD-----------DR----RISFLCGNAGVYAVGAAVYHYLKDED 72 (343)
T ss_pred HHhccccccCchHHHHHHHHHHHHHHhh------ccc-----------cc----CCCccCCcHHHHHHHHHHHHHhcChH
Confidence 3566 89999999999887766442 111 00 11223333444555678889999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcceEecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHHH
Q 008300 264 YRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYSRDMWETSMKGLL 343 (570)
Q Consensus 264 Y~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfYEYLLK~~iL~g~~d~~~~~~~~~y~~A~~~i~ 343 (570)
+.+.+.+....+....... . + .+ ...+-.|+. .+--+|+..+-.+++.. .. .+...+.++.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~-----~-~--~~---~~d~l~G~a--G~l~~Ll~l~~~~~~~~---~~-~~~~~~~~~~il 135 (343)
T cd04794 73 EVDEFLSKFLQLLESVVSP-----D-S--GL---PDELLYGRA--GYLYALLFLNKKFGFKK---IP-SSLIKSICDAIL 135 (343)
T ss_pred HHHHHHHHHHHHHHHHhhc-----c-c--CC---chhhhccHH--HHHHHHHHHHHHcCcCC---CC-HHHHHHHHHHHH
Confidence 9999988888775421110 0 0 00 001112222 24456777777666432 12 455555555544
Q ss_pred HhhcccCCC---CCeeeeccCCCccccccccccccc---chhh-hhhcCCCCCCCchHHHHHHHHHHHHHHHhhhcCCCC
Q 008300 344 SLVRRSTPS---SFTYICEKNGDSLIDKMDELACFA---PGMI-ALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTK 416 (570)
Q Consensus 344 ~ll~~~~~~---~~~~v~~~~g~~~~~~m~hLsCF~---pGml-aLG~~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tG 416 (570)
+..+..... ......+..+ .....|. +|.+ +|-. .....+.+++.+.+++..+...... .+.|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~G~aHG~aGI~~~L~~-~~~~~~~~~~~~~i~~~i~~~~~~~--~~~g 205 (343)
T cd04794 136 ESGRTGAAKYRAPCPLMYEWHG-------KEYLGAAHGLAGILYILLQ-TPLFLLKPSLAPLIKRSLDYLLSLQ--FPSG 205 (343)
T ss_pred HHHHHhhhccCCCCCccccccC-------ceecchhhhHHHHHHHHHh-hhhhcCCccHHHHHHHHHHHHHHhh--ccCC
Confidence 322111000 0000000000 0011221 1211 1111 0010123455555544443332222 2234
Q ss_pred ccceeEeecCCCccccccCCCCCchhHHHHHHhHHhhcCCchHHHHHHHHHHHHHH
Q 008300 417 LAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEK 472 (570)
Q Consensus 417 l~PE~~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~TgD~~Yre~gW~if~ai~~ 472 (570)
--|....-.. . .....|----|=++.++..+|++++|++|++.+..+.+.+-+
T Consensus 206 ~w~~~~~~~~-~--~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (343)
T cd04794 206 NFPSSLGNRK-R--DRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWK 258 (343)
T ss_pred CCCCccCCCC-C--CccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3232111000 0 112346667788999999999999999999999888776543
No 44
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=56.21 E-value=30 Score=29.04 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=13.4
Q ss_pred HhcccchhhhhhhhhhhHHHHHHHHHHH
Q 008300 46 WDRQTLVREHEVELSELNEEVTQLRNLL 73 (570)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (570)
...+.-.+....++.++++++.++++.-
T Consensus 20 v~~~~~~~~~~~~~~~~~~~~~~l~~en 47 (85)
T TIGR02209 20 VSAQHQTRQLNNELQKLQLEIDKLQKEW 47 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555555554444433
No 45
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=53.95 E-value=21 Score=37.72 Aligned_cols=70 Identities=30% Similarity=0.330 Sum_probs=48.2
Q ss_pred ccchhhHHHHHHH---hCCchHHHHHHHHHHHHhhcCCCCCCcceEecCCCCCCCCCeeeec--ccCchHHHHHHHHH
Q 008300 246 GTEQLELIALSQR---TGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFG--AMGDSFYEYLLKVW 318 (570)
Q Consensus 246 GSl~LEF~~LS~l---TGd~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~G--a~~DSfYEYLLK~~ 318 (570)
|.-+-|+..|+++ |+|++|.++++++.+.|.+...+.|=+|.+. |..+.+ ..+|||- ++. .--|-|...+
T Consensus 44 ~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~-p~~~~Y-~~~ITfND~am~-~vl~lL~~i~ 118 (290)
T TIGR02474 44 GATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFY-PLKGGY-SDAITYNDNAMV-NVLTLLDDIA 118 (290)
T ss_pred ccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCccc-CCcCCc-ccccccCcHHHH-HHHHHHHHHH
Confidence 3345566666665 9999999999999999999877889999987 444433 3466762 222 3345554444
No 46
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=49.34 E-value=1.6e+02 Score=32.45 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=83.0
Q ss_pred HhcCCCCCChhHHHHHHHHHHhhcCCCC--------------Cccccccchhh------hhccccceeeccCCChHHHHH
Q 008300 141 SMCLFWRISDYSFSSEFMWIANSLDFNK--------------SYDASVFETTI------RVVGGLLSAYDLSGDKVFLEK 200 (570)
Q Consensus 141 IMgl~~~~~~eEF~~A~~~V~~~ldF~~--------------~~~VsvFEttI------RvLGGLLSAY~LSgd~~lL~K 200 (570)
++|- ++.|++..+|.++++.=.. ++...|-+.+- =+-=.||=|..+=+++.+++.
T Consensus 66 ~a~D-----r~~Fd~Lw~Wt~~~L~~~d~~~~L~aW~w~~~~~g~~~v~D~NsASDGDl~IA~ALl~A~~~W~~~~Y~~~ 140 (376)
T PRK11097 66 VAND-----RAAFDKLLNWTENNLAQGDLTARLPAWLWGKKADGTWGVLDANSASDADLWIAYSLLEAGRLWKEPRYTAL 140 (376)
T ss_pred HcCC-----HHHHHHHHHHHHHHHhcCCCcccCceeEeccCCCCCcCCCCCCCCChHHHHHHHHHHHHHHhhCcHHHHHH
Confidence 3688 9999999999998774221 11111222221 111123444444468889999
Q ss_pred HHHHHHHHhhcccC-CCCCCcceeecC-CCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhc
Q 008300 201 ARDIADRLLPAWNT-RTGIPYNVINLA-HGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKT 278 (570)
Q Consensus 201 A~dLadrLLpAFdT-ptGiP~~~vNl~-~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~ 278 (570)
|+.|+.+|+.-=-. -+|+ ...+.+. .|-.....|. .+.+-. +.-=|..+++.++|+...+.++..++.|.+.
T Consensus 141 A~~ll~~I~~~ev~~~~g~-g~~LlPG~~gF~~~~~~~---~NPSY~--~p~~~~~fa~~~~~~~W~~l~~~~~~lL~~~ 214 (376)
T PRK11097 141 GTALLKRIAREEVVTVPGL-GSMLLPGPVGFADDGSWR---LNPSYL--PPQLLRRFARFLPGGPWAALAATNARLLLET 214 (376)
T ss_pred HHHHHHHHHHhcccccCCC-ceeeccccccccCCCCCe---ECcccc--cHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 99999999873111 1232 0011111 1111111111 111111 1122778899999999999999999999886
Q ss_pred CCCCCCcceEecCCCC
Q 008300 279 FPADGLLPIYISPDRG 294 (570)
Q Consensus 279 ~~~~GL~p~~id~~tg 294 (570)
. +.||+|+.+..+.+
T Consensus 215 a-~tGL~PDWv~~~~~ 229 (376)
T PRK11097 215 A-PKGFSPDWVRYQKG 229 (376)
T ss_pred c-ccCCCCcceeEcCC
Confidence 5 78999999988754
No 47
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=45.05 E-value=61 Score=34.30 Aligned_cols=96 Identities=25% Similarity=0.276 Sum_probs=52.5
Q ss_pred cccchhhHH-HHHHHhCCchHHHHHHHHHHHHhhcCCCCCCcceEecCCCCCCCCCeeee--cccCchHHHHHHHHHHhc
Q 008300 245 SGTEQLELI-ALSQRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITF--GAMGDSFYEYLLKVWIQG 321 (570)
Q Consensus 245 ~GSl~LEF~-~LS~lTGd~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~--Ga~~DSfYEYLLK~~iL~ 321 (570)
+++.+|.|. ++-+.|+|++|.+++.+.++.|.+..-+.|=+|.+.-...| -..+||| +++.+ --+-|...+--.
T Consensus 40 aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~--Y~~~ITfNDdam~~-vl~lL~~v~~~~ 116 (289)
T PF09492_consen 40 ATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGG--YHDHITFNDDAMVN-VLELLRDVAEGK 116 (289)
T ss_dssp TTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SG--GGGSEE-GGGHHHH-HHHHHHHHHCT-
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCC--CCCceEEccHHHHH-HHHHHHHHHhhc
Confidence 344444443 35567899999999999999999966568999997755444 3467887 44443 335555544333
Q ss_pred CCCCCcc-----cccHHHHHHHHHHHHH
Q 008300 322 NKTSAVK-----PYSRDMWETSMKGLLS 344 (570)
Q Consensus 322 g~~d~~~-----~~~~~~y~~A~~~i~~ 344 (570)
++-++++ .+ ++.+.++++-|.+
T Consensus 117 ~~~~~v~~~~~~r~-~~A~~kgi~ciL~ 143 (289)
T PF09492_consen 117 GDFAFVDESLRARA-RAAVDKGIDCILK 143 (289)
T ss_dssp TTSTTS-HHHHHHH-HHHHHHHHHHHHH
T ss_pred CCccccCHHHHHHH-HHHHHHHHHHHHH
Confidence 3332222 23 4445555555544
No 48
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=43.77 E-value=60 Score=28.09 Aligned_cols=46 Identities=28% Similarity=0.441 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHhhc
Q 008300 32 AMLLIVFVSVTLVVWDRQTLVREHEVELSELNEEVTQLRNLLEEIKN 78 (570)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (570)
++++.++++.+..+|... -++....|+.+++.+..+|++.-+.+..
T Consensus 18 ~l~~~v~~~a~~~v~~~~-~~~~~~~~l~~l~~~~~~l~~e~~~L~l 63 (97)
T PF04999_consen 18 LLVIVVLISALGVVYSRH-QSRQLFYELQQLEKEIDQLQEENERLRL 63 (97)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445556666553 3566666677777777777776544443
No 49
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=42.69 E-value=6.8 Score=40.73 Aligned_cols=124 Identities=22% Similarity=0.212 Sum_probs=68.3
Q ss_pred cccchhhhhccccceeeccCCChHHHHHHHHHHHHHhhcccCC--CCCCcceeecCCCCCCCCCCCCCCccccccccchh
Q 008300 173 SVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTR--TGIPYNVINLAHGNPHNPSWTGGESILADSGTEQL 250 (570)
Q Consensus 173 svFEttIRvLGGLLSAY~LSgd~~lL~KA~dLadrLLpAFdTp--tGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~L 250 (570)
++.--..=++--|+..|+..+++.+++.+.+++++|+.....- ...|...-.. .+ ..+.++..|. ..+.+
T Consensus 103 D~l~G~aGi~~~ll~~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~-~~-~~~~G~aHG~------~Gi~~ 174 (355)
T PF05147_consen 103 DLLSGLAGIGLYLLSLYEKTKDPKYLDIIEKILEKLLESIINDDPSENQIGSEWK-EG-FINLGFAHGI------AGILY 174 (355)
T ss_dssp STTTSHHHHHHHHCCHHHHHCCHHS-HHHHHHHHHCCCHHCCCHTCCGSSSHHCH-TT-BEE-STTTSH------HHHHH
T ss_pred hhhcccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcccccCCCccccC-CC-CccCCccccH------HHHHH
Confidence 3444444455556777777789999999999999998877641 1111100000 00 0001111111 12223
Q ss_pred hHHHHH-HHhCCchHHHHHHHHHHHHhhcCC-CCCCcceEecCC----CCCCCCCeeeec
Q 008300 251 ELIALS-QRTGDPKYRQKAEKVIVELNKTFP-ADGLLPIYISPD----RGTPSYSTITFG 304 (570)
Q Consensus 251 EF~~LS-~lTGd~kY~~~a~~i~~~L~~~~~-~~GL~p~~id~~----tg~~~~~~~t~G 304 (570)
=+.++. +.|++++|.+.++++.+.+.+... .+|-+|...+.. ...|+.+..+++
T Consensus 175 ~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~G~~Gi~ 234 (355)
T PF05147_consen 175 ALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWCYGSPGIL 234 (355)
T ss_dssp HHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSSSSHHHHH
T ss_pred HHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccccCcHHHH
Confidence 355677 699999999999999999998552 344588887766 566776655443
No 50
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=42.54 E-value=34 Score=36.62 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=52.1
Q ss_pred cceeeccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchH
Q 008300 185 LLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKY 264 (570)
Q Consensus 185 LLSAY~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY 264 (570)
|+.++...+|+.+.+.|.++.+.++....... + ..++.+ |-.-+| +..-|.++++.|||+.|
T Consensus 253 l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~-~~~~~l-----ChG~~G-~~~~l~~~~~~~~~~~~ 314 (382)
T cd04793 253 LQLAGKALDDQKLQEAAEKILKAALKDKKQLS-----------K-LISPTL-----CHGLAG-LLFIFYLLYKDTNTNEF 314 (382)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhChhhhc-----------c-CCCCCc-----CccHHH-HHHHHHHHHHHhCCcHH
Confidence 45667777899999999999888775432110 0 011221 212222 22447899999999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 008300 265 RQKAEKVIVELNKTFPA 281 (570)
Q Consensus 265 ~~~a~~i~~~L~~~~~~ 281 (570)
.+.|++..+.+.+....
T Consensus 315 ~~~a~~~~~~~l~~~~~ 331 (382)
T cd04793 315 KSALEYLLNQIISSYSE 331 (382)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999988875433
No 51
>PF12060 DUF3541: Domain of unknown function (DUF3541); InterPro: IPR021928 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length.
Probab=40.26 E-value=16 Score=36.82 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=23.1
Q ss_pred ccCCCCCchhHHHHHHhHHhhcCCchHHHHHHHHHHHH
Q 008300 433 GTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAF 470 (570)
Q Consensus 433 ~~~~y~LRPE~IESlfyLyR~TgD~~Yre~gW~if~ai 470 (570)
...||-|| |||.|||+||....|.=.-.+
T Consensus 28 ~~GHyglR---------mYRqT~d~kYaaa~~~D~~rV 56 (227)
T PF12060_consen 28 KQGHYGLR---------MYRQTGDPKYAAAVWSDMARV 56 (227)
T ss_pred hcchHHHH---------HHHHhccHHHHHHHHHHHHHH
Confidence 34578776 999999999999999755444
No 52
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=36.56 E-value=32 Score=26.32 Aligned_cols=22 Identities=5% Similarity=0.372 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHhccc
Q 008300 29 KRLAMLLIVFVSVTLVVWDRQT 50 (570)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~ 50 (570)
.-+++++++|+++++..|.+.+
T Consensus 13 ~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHcccc
Confidence 3456667777776665555443
No 53
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=35.75 E-value=14 Score=38.58 Aligned_cols=84 Identities=18% Similarity=0.347 Sum_probs=45.8
Q ss_pred CchHHHHHHHHHHHHhhcCCCCCCcceE-ecCCCCCCCCCeeeeccc-CchHHHHHHHH--------HHhcCCCCCcccc
Q 008300 261 DPKYRQKAEKVIVELNKTFPADGLLPIY-ISPDRGTPSYSTITFGAM-GDSFYEYLLKV--------WIQGNKTSAVKPY 330 (570)
Q Consensus 261 d~kY~~~a~~i~~~L~~~~~~~GL~p~~-id~~tg~~~~~~~t~Ga~-~DSfYEYLLK~--------~iL~g~~d~~~~~ 330 (570)
||.|++.++++++.+.+..-..+|+|.. -+...|.|....-.++.. ...|.+||.+- |+|+|+.......
T Consensus 83 N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~~~~~~~ 162 (289)
T PF13204_consen 83 NPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDYFDTEKT 162 (289)
T ss_dssp ---HHHHHHHHHHHHHHTT-EEEEESS-HHHHH-------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS--TTSS
T ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEEEECCccccccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCccCCCCcC
Confidence 6999999999999998864444555554 222234444322333332 45678999865 4666766111234
Q ss_pred cHHHHHHHHHHHHHh
Q 008300 331 SRDMWETSMKGLLSL 345 (570)
Q Consensus 331 ~~~~y~~A~~~i~~l 345 (570)
.+.|.+..+.|++.
T Consensus 163 -~~~w~~~~~~i~~~ 176 (289)
T PF13204_consen 163 -RADWDAMARGIKEN 176 (289)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhh
Confidence 78888888888763
No 54
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=35.12 E-value=1.8e+02 Score=31.25 Aligned_cols=142 Identities=21% Similarity=0.200 Sum_probs=85.1
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHhhcCCCC----------Ccc--c----cccchhhhhccccceeeccCC--ChHHHHH
Q 008300 139 LYSMCLFWRISDYSFSSEFMWIANSLDFNK----------SYD--A----SVFETTIRVVGGLLSAYDLSG--DKVFLEK 200 (570)
Q Consensus 139 L~IMgl~~~~~~eEF~~A~~~V~~~ldF~~----------~~~--V----svFEttIRvLGGLLSAY~LSg--d~~lL~K 200 (570)
..+||- +++|++..+|..+++.-.. ++. + |-.+-=+.+-=+||=|...=+ ...++..
T Consensus 65 av~~~d-----~~~Fd~l~~wt~~~l~~~~~~L~aW~~~~~~~~~~~~~nsAtDgDl~iA~ALl~A~~~Wg~~~~~y~~~ 139 (342)
T PF01270_consen 65 AVLMDD-----RATFDRLWNWTKANLSRRNDGLMAWRWGPDGNSQVGDPNSATDGDLDIAYALLLAARRWGDGAYNYLAE 139 (342)
T ss_dssp HHHTTH-----HHHHHHHHHHHHHHCBTTTTSSBESEEETTSTSSCEECSEBHHHHHHHHHHHHHHHHHHTSSSSHHHHH
T ss_pred HHHhCC-----HHHHHHHHHHHHHHhccCCCCCeeEEECCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcCCcchhHHHH
Confidence 455788 9999999999999876211 111 1 233444566666776666656 4467888
Q ss_pred HHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhc-C
Q 008300 201 ARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKT-F 279 (570)
Q Consensus 201 A~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~-~ 279 (570)
|+.+...++..-.. .| ...+ ..|......-....++++-.- .-=|..+.+.|+|+...+++++..+.|.+. .
T Consensus 140 A~~~~~~i~~~~v~-~g--~~~l--lpG~~~f~~~~~~~~npSY~~--~pa~~~f~~~~~~~~W~~v~~~~~~ll~~~~~ 212 (342)
T PF01270_consen 140 ALAIINAIKTHEVN-PG--RYVL--LPGDWGFNSDDYWTTNPSYFM--PPAFRAFAAATGDPRWNEVADSSYALLQKASF 212 (342)
T ss_dssp HHHHHHHHHHHHEE-TT--EEEE--CSSSSSCBTTSEEEEEGGGS---HHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhheeC-CC--ceEE--eccccccCCCCceEeChhhcc--HHHHHHHHHhcCChhHHHHHHHHHHHHHHhcc
Confidence 88888776543322 33 0111 111110000000012222221 133778999999999999999999988884 5
Q ss_pred CCCCCcceEecCC
Q 008300 280 PADGLLPIYISPD 292 (570)
Q Consensus 280 ~~~GL~p~~id~~ 292 (570)
+..||+|+.+..+
T Consensus 213 ~~tGL~PDw~~~~ 225 (342)
T PF01270_consen 213 PKTGLPPDWVVYD 225 (342)
T ss_dssp TTTTB--SSEETT
T ss_pred cCCCCCchheeec
Confidence 6789999999887
No 55
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.25 E-value=95 Score=24.80 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=17.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHh
Q 008300 53 REHEVELSELNEEVTQLRNLLEEI 76 (570)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~ 76 (570)
..+..+..++++++.+++.+++++
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666788888888888877553
No 56
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=33.12 E-value=57 Score=35.20 Aligned_cols=149 Identities=23% Similarity=0.275 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHh---------------hccCchh-hhH-H-HHhcCCCCCC----hhHHHHHHHHHHhhc
Q 008300 107 IDIQRKQKVKDAMIHAWSSYEK---------------YAWGQDE-LQL-L-YSMCLFWRIS----DYSFSSEFMWIANSL 164 (570)
Q Consensus 107 ~~~~r~~~Vk~aF~haw~~Y~k---------------~Awg~DE-L~P-L-~IMgl~~~~~----~eEF~~A~~~V~~~l 164 (570)
...++...|-+++..+=..+.+ .=||.-. |.- | ++|.-.-.++ .+..+-.++++.+ .
T Consensus 179 i~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~-~ 257 (403)
T KOG2787|consen 179 IPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQ-N 257 (403)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHH-c
Confidence 4455667777777776665543 2344332 111 2 3444322222 2345666777765 4
Q ss_pred CCCCCccccccchhhhh--c----c------ccceeeccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCC
Q 008300 165 DFNKSYDASVFETTIRV--V----G------GLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHN 232 (570)
Q Consensus 165 dF~~~~~VsvFEttIRv--L----G------GLLSAY~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~~~ 232 (570)
.|. +++-.+-|.+-|= + | =|.=||..=.++.+|+-|.+.||.+- . .|+--.-+-+-+|.+.+
T Consensus 258 rfp-sGNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW---~--rGlLkkg~GichGvaGN 331 (403)
T KOG2787|consen 258 RFP-SGNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVW---K--RGLLKKGVGICHGVAGN 331 (403)
T ss_pred cCC-CCCCCcccCCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---H--hhhhhcCCcccccccCc
Confidence 554 4444444433221 1 1 15567777778999999999999973 2 34322112222332211
Q ss_pred CCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhc
Q 008300 233 PSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKT 278 (570)
Q Consensus 233 ~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~ 278 (570)
---|..|-++|||++|.-.|.+....+.+.
T Consensus 332 ----------------aYvFLsLyRLT~d~kYlyRA~kFae~lld~ 361 (403)
T KOG2787|consen 332 ----------------AYVFLSLYRLTGDMKYLYRAKKFAEWLLDY 361 (403)
T ss_pred ----------------hhhhHhHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 123899999999999999999999988773
No 57
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=32.41 E-value=1.7e+02 Score=32.09 Aligned_cols=92 Identities=10% Similarity=-0.020 Sum_probs=59.9
Q ss_pred hhhhcCCCCCCCchHHHHHHHHHHHHHHHhhhcCCCC----ccceeEeecCCCccccccCCCCCchhHHHHHHhHHhhcC
Q 008300 380 IALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTK----LAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTG 455 (570)
Q Consensus 380 laLG~~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tG----l~PE~~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~Tg 455 (570)
|.++++..+ .++|.+.|+.|.....+--...-.| |.|-...|..... ...+++|.+ ..-+=.++++|+
T Consensus 125 Ll~A~~~W~---~~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~~~~~-~~~NPSY~~----p~~~~~fa~~~~ 196 (376)
T PRK11097 125 LLEAGRLWK---EPRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFADDGS-WRLNPSYLP----PQLLRRFARFLP 196 (376)
T ss_pred HHHHHHhhC---cHHHHHHHHHHHHHHHHhcccccCCCceeeccccccccCCCC-CeECccccc----HHHHHHHHHhcC
Confidence 445666554 4579999988887776532222235 5566666665432 334566652 233345568899
Q ss_pred CchHHHHHHHHHHHHHHhcccCcCcc
Q 008300 456 NKTYKEWGWNIFQAFEKNSRIESGYV 481 (570)
Q Consensus 456 D~~Yre~gW~if~ai~~~~r~~~Gya 481 (570)
|+.|.+..-...+-+.+.+ +.|+.
T Consensus 197 ~~~W~~l~~~~~~lL~~~a--~tGL~ 220 (376)
T PRK11097 197 GGPWAALAATNARLLLETA--PKGFS 220 (376)
T ss_pred CchHHHHHHHHHHHHHHhc--ccCCC
Confidence 9999999999999999877 55643
No 58
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=32.06 E-value=53 Score=24.89 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=15.8
Q ss_pred chhHHHHHHHHHHHHHHHHhcc
Q 008300 28 PKRLAMLLIVFVSVTLVVWDRQ 49 (570)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~ 49 (570)
-+.+-+++.+|+.++|+||+-|
T Consensus 13 ~~~lQL~LL~FlL~fFLV~Wd~ 34 (44)
T PF08135_consen 13 TFALQLLLLVFLLFFFLVYWDQ 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3556677778888888887754
No 59
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=31.48 E-value=35 Score=34.55 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=23.6
Q ss_pred HHhHHhhcCCchHHHHHHHHHHHHHHhccc
Q 008300 447 LFYLWRLTGNKTYKEWGWNIFQAFEKNSRI 476 (570)
Q Consensus 447 lfyLyR~TgD~~Yre~gW~if~ai~~~~r~ 476 (570)
+=.+|.+|||++|.+.+-+|+.++-..+++
T Consensus 65 lAlay~~Tgd~~YA~~a~~iL~~W~~~~~~ 94 (272)
T PF05426_consen 65 LALAYYLTGDEKYADKAAEILNAWALNYKT 94 (272)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHccCcc
Confidence 456799999999999999999998665555
No 60
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.22 E-value=45 Score=37.88 Aligned_cols=58 Identities=24% Similarity=0.282 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCccceeEeecCCCccccccCCCCCchhHHHHHHhHHhhcCCchHHHHHHHHH
Q 008300 393 EKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIF 467 (570)
Q Consensus 393 ~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~TgD~~Yre~gW~if 467 (570)
.+.++++..+++-. .|.++||. + ....|.--||+=|.+-=|||+|||++|.+.|--..
T Consensus 150 r~lldV~~rlADhi-------~tvfgp~~-----~-----q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi 207 (589)
T COG3533 150 RRLLDVVCRLADHI-------ATVFGPEE-----D-----QVPGYCGHPEIELALAELYRLTGDQRYLDLARRFI 207 (589)
T ss_pred chHHHHHHHHHHhh-------hhhcCccc-----c-----ccccccCCCchhHHHHHHHHHhcChHHHHHHHHHH
Confidence 46777776666543 35666764 1 23467778999999999999999999999987554
No 61
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=28.04 E-value=1.5e+02 Score=24.68 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=25.6
Q ss_pred HHHHHHHhcccch---hhhhhhhhhhHHHHHHHHHHHHHhhcC
Q 008300 40 SVTLVVWDRQTLV---REHEVELSELNEEVTQLRNLLEEIKNN 79 (570)
Q Consensus 40 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (570)
+++..-....... .+.+.++..+++|..+|+.+...+...
T Consensus 18 ~~v~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~ 60 (85)
T TIGR02209 18 SVVSAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRH 60 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 3444444443433 566777888888888888877665543
No 62
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=26.92 E-value=79 Score=38.24 Aligned_cols=74 Identities=23% Similarity=0.292 Sum_probs=49.8
Q ss_pred cceeeccCCChHHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchH
Q 008300 185 LLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKY 264 (570)
Q Consensus 185 LLSAY~LSgd~~lL~KA~dLadrLLpAFdTptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY 264 (570)
|+|-|-++..+.+|+.|.-+|+.||.- -++.=-.. -..+|- ...+.-+.+-+..|-+.||+++|
T Consensus 751 L~~iYk~~~epk~l~~ais~~~~l~~~---~v~~d~s~-~~l~gf------------shg~sgi~~tL~~ly~~T~e~~l 814 (963)
T COG4403 751 LVSIYKLTDEPKFLELAISLGRILMEK---IVGNDSSE-TVLLGF------------SHGASGIILTLLKLYEATGEESL 814 (963)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHH---hhcccccc-ceeccc------------ccchHHHHHHHHHHHHhcCcHHH
Confidence 678899999999999999999999931 11110000 011111 12233356779999999999999
Q ss_pred HHHHHHHHHH
Q 008300 265 RQKAEKVIVE 274 (570)
Q Consensus 265 ~~~a~~i~~~ 274 (570)
.+++......
T Consensus 815 ~~~i~e~~~~ 824 (963)
T COG4403 815 LKKIKELLSY 824 (963)
T ss_pred HHHHHHHHHH
Confidence 9888776543
No 63
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=26.14 E-value=25 Score=31.31 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=28.0
Q ss_pred CcccccCccccccCchhHHHHHHHHHHHHHHHHhc
Q 008300 14 GKLRYCNPAYYLKRPKRLAMLLIVFVSVTLVVWDR 48 (570)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (570)
+-|||-|--+...++-.+.-+|++.+|.+++.|..
T Consensus 60 ~~wR~~nkY~~Pv~~gsi~~if~~~~ay~~f~yl~ 94 (108)
T KOG4092|consen 60 GYWRYYNKYINPVKKGSISGIFMVLAAYVLFSYLF 94 (108)
T ss_pred HHHHHHhheechhhcCchhHHHHHHHHHHHHHHHH
Confidence 67999887777667777888888888888887765
No 64
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=24.27 E-value=85 Score=31.19 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=31.8
Q ss_pred hHHHHHHhHHhhcCCchHHHHHHHHHHHHHHhcccCcCccc
Q 008300 442 ETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVG 482 (570)
Q Consensus 442 E~IESlfyLyR~TgD~~Yre~gW~if~ai~~~~r~~~Gya~ 482 (570)
+.|..+-=+|.+|||++|.+.|-+.++.+..-+ .++|...
T Consensus 34 ~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~-~~GG~~~ 73 (189)
T PF06662_consen 34 QAISVLARAYQLTGDEKYLDAAKKALNSFKVPV-EEGGVLA 73 (189)
T ss_pred HHHHHHHHHHHhHCCHHHHHHHHHHHHHhcChH-hhCCeeE
Confidence 678888888999999999999999999986643 2445443
No 65
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=24.25 E-value=1.4e+02 Score=24.31 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHH
Q 008300 33 MLLIVFVSVTLVVWDRQTLVREHEVELSELNEEVTQLRNLLE 74 (570)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (570)
++.++++++++++=...+-+...-.....+|+++.+..+.||
T Consensus 15 l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 15 LIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 334444444443222222222233334456777777777665
No 66
>PF12632 Vezatin: Mysoin-binding motif of peroxisomes
Probab=23.59 E-value=5.9e+02 Score=26.11 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=45.6
Q ss_pred chhHHHHHHHHHHHHHHHHhcccchhhhhhhhhhhHHHHHHHHH----------HHHHhhcCCCCCCcccccccccCCCC
Q 008300 28 PKRLAMLLIVFVSVTLVVWDRQTLVREHEVELSELNEEVTQLRN----------LLEEIKNNPANVIGKIDHIKQAKQPP 97 (570)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (570)
+++++.+++++++..++.|..-.+-....--+..|++.+..+++ .++|+..+-.++++++ +.||
T Consensus 23 ~~~~l~~lll~~~~~~~~~~~~rl~~~r~k~l~~l~~fv~~~q~fd~~~~~~l~~iqE~elvsrg~~~s~------p~~~ 96 (252)
T PF12632_consen 23 KKRVLFLLLLIVSLALIQYRFFRLRYLRHKALSNLQEFVSNSQKFDSLIHKALILIQEVELVSRGYRLSA------PLPP 96 (252)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccc------cchh
Confidence 34445555666666666566544332222224455555555544 2233333333333222 2233
Q ss_pred CCCCCCCCh--hHHHHHHHHHHHHHHHHHHhHh
Q 008300 98 GNKAFAEDP--IDIQRKQKVKDAMIHAWSSYEK 128 (570)
Q Consensus 98 ~~~~~~~~~--~~~~r~~~Vk~aF~haw~~Y~k 128 (570)
..+..+..+ .-..-|+.+..++...+.+|+.
T Consensus 97 ~s~~~~~~~~~~~~~Lr~~L~~~l~~l~~~~~~ 129 (252)
T PF12632_consen 97 ISRLEDQSQSRRCSRLRKALSSSLSELFYNYRQ 129 (252)
T ss_pred hccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222 2234467777777777777774
No 67
>PRK09458 pspB phage shock protein B; Provisional
Probab=23.27 E-value=1.3e+02 Score=25.76 Aligned_cols=42 Identities=26% Similarity=0.477 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhccc----------chhhhhhhhhhhHHHHHHHHHHH
Q 008300 32 AMLLIVFVSVTLVVWDRQT----------LVREHEVELSELNEEVTQLRNLL 73 (570)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 73 (570)
+.-+|+|+.++.-+|...+ ++.+-+..+..|.+...++++-+
T Consensus 7 ~~PliiF~ifVaPiWL~LHY~sk~~~~~~Ls~~d~~~L~~L~~~A~rm~~RI 58 (75)
T PRK09458 7 AIPLTIFVLFVAPIWLWLHYRSKRQGSQGLSQEEQQRLAQLTEKAERMRERI 58 (75)
T ss_pred HHhHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666665433 44444444444445544444433
No 68
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.70 E-value=1.8e+02 Score=25.98 Aligned_cols=45 Identities=9% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHhh
Q 008300 33 MLLIVFVSVTLVVWDRQTLVREHEVELSELNEEVTQLRNLLEEIK 77 (570)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (570)
+++++++++++++--..-++.........+++++.+++++++++.
T Consensus 3 ~~~~vll~ll~~l~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~l~ 47 (105)
T PRK00888 3 LLTLLLLALLVWLQYSLWFGKNGILDYWRVNDQVAAQQQTNAKLK 47 (105)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH
No 69
>PF11329 DUF3131: Protein of unknown function (DUF3131); InterPro: IPR021478 This bacterial family of proteins has no known function.
Probab=22.39 E-value=4e+02 Score=29.28 Aligned_cols=135 Identities=19% Similarity=0.255 Sum_probs=78.9
Q ss_pred hhccccceeeccC--CChHHHHHHHHHHHHH--hhcccCCCCCCcceeecCCCCCCCCCCCCCC---ccccccccchhhH
Q 008300 180 RVVGGLLSAYDLS--GDKVFLEKARDIADRL--LPAWNTRTGIPYNVINLAHGNPHNPSWTGGE---SILADSGTEQLEL 252 (570)
Q Consensus 180 RvLGGLLSAY~LS--gd~~lL~KA~dLadrL--LpAFdTptGiP~~~vNl~~g~~~~~~~~~~~---s~lAe~GSl~LEF 252 (570)
=+|-+|+||.+|- ..+.+.++...+-.-| ||-| +.++|..+.|-.++.+.+..-.... -+.-++|-+..=+
T Consensus 38 ~yL~al~AA~~lglIs~~e~~~Rl~~~L~tL~~lpl~--~g~lPn~~Y~t~T~~~~~~~~~p~~~~gwSavD~GrLl~~L 115 (367)
T PF11329_consen 38 SYLMALVAARELGLISREEFDQRLEKTLATLEKLPLF--RGHLPNKWYNTQTGQPVDYGNQPGERIGWSAVDIGRLLIAL 115 (367)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCccc--CCcCccceeecCcCcccccCCCCCccCCccHhhHHHHHHHH
Confidence 4677899999875 3455555544443333 4544 5789999999999988542100001 2345667776666
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHh--hcCCCCCCcceEecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCC
Q 008300 253 IALSQRTGDPKYRQKAEKVIVELN--KTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKT 324 (570)
Q Consensus 253 ~~LS~lTGd~kY~~~a~~i~~~L~--~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfYEYLLK~~iL~g~~ 324 (570)
..|.+ .-|.|.+.+.++..... ......-|++..++...-... ..-.+ .|=||.-+.+.|-|-.
T Consensus 116 ~il~~--~~P~~a~~v~~l~~~W~~~~~i~~G~l~ga~~~~~~~~~~-qegRl-----Gye~YAA~~~~lwG~~ 181 (367)
T PF11329_consen 116 RILKQ--RYPEYAEQVDALVLRWNFCRLIDDGELYGATVNKGQEQYR-QEGRL-----GYEEYAARGFQLWGFD 181 (367)
T ss_pred HHHHH--HCchHHHHHHHHHHhCCHHHHhcCCeeeeeEecCCceEEe-ecccc-----cHHHHHHHHHHHcCCC
Confidence 66654 47888777777665532 123322356665554421111 11112 3678999999988843
No 70
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=21.69 E-value=2.6e+02 Score=30.45 Aligned_cols=198 Identities=20% Similarity=0.257 Sum_probs=0.0
Q ss_pred eccCCChHHH----HHHHHHHHHHhhcccC-CCCCCcceeecCCCCCCCCCCCCCCccccccccchhhH--------HHH
Q 008300 189 YDLSGDKVFL----EKARDIADRLLPAWNT-RTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLEL--------IAL 255 (570)
Q Consensus 189 Y~LSgd~~lL----~KA~dLadrLLpAFdT-ptGiP~~~vNl~~g~~~~~~~~~~~s~lAe~GSl~LEF--------~~L 255 (570)
|.+|||..|| .+++...+.++. ||. ..|+|-. +..+..+......-...+..--+ ..|
T Consensus 112 ~~~TGD~~fL~~~wp~v~~a~~~~~~-~D~d~dGl~e~--------~g~~D~TyD~~~~~G~say~~~L~laAL~A~~em 182 (365)
T PF04685_consen 112 YKWTGDRDFLKEMWPAVKKAMDYLLS-WDRDGDGLPEN--------PGHPDQTYDDWSMYGPSAYCGGLWLAALRAAAEM 182 (365)
T ss_dssp -----------EHHHHHHHHHHHHHH-SB--TTS-BEE--------ET---SSSTT-EEEEEEHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHh-hCCCCCCCCCC--------CCCCccccccCCeeCCCHHHHHHHHHHHHHHHHH
Q ss_pred HHHhCCc----hHHHHHHHHHHHHhhcCCCCCCcceEecCCCCCCCCCeeeecccCchHH-HHHHHHHHhcCCCCCcccc
Q 008300 256 SQRTGDP----KYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFY-EYLLKVWIQGNKTSAVKPY 330 (570)
Q Consensus 256 S~lTGd~----kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSfY-EYLLK~~iL~g~~d~~~~~ 330 (570)
+++.||+ +|.+.++++.+.+.+..=..--+-..+| .....+=+-++|... +..+..-=|.+=-+
T Consensus 183 A~~lgd~~~a~~y~~~~~~~~~~~~~~LWnGeyy~~~~d------~~~~~~~~~~aDQl~Gqw~a~~~gl~~v~~----- 251 (365)
T PF04685_consen 183 AKILGDPELAAKYRELAEKAKKAFNKKLWNGEYYRQWYD------SKYQNGDGCMADQLCGQWWARLLGLGDVLD----- 251 (365)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHHHHHHHSEETTEE--EE---------TTS-EES-TT-SS--EEHHHHHHTT-S------
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHhhCHhheeeeec------cCCCCCCeEEeChhhHHHHHHHcCCcCCCC-----
Q ss_pred cHHHHHHHHHHHHHhhcc---cCCCCCeeeeccCCCcccccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHH
Q 008300 331 SRDMWETSMKGLLSLVRR---STPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCY 407 (570)
Q Consensus 331 ~~~~y~~A~~~i~~ll~~---~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLG~~~~~~~~~~~~l~lA~~L~~tC~ 407 (570)
.+.=..|+++|.++... ..+.+..-..--.|..-.+..++-.|.-+-..++++.....+..++-+++|+.+-++|+
T Consensus 252 -~e~v~sAL~sI~~~N~~~~~~~~~G~~n~~~p~g~~~~~~~q~~evW~G~~y~~Aa~mi~~G~~~e~~~~~~~~~~~~~ 330 (365)
T PF04685_consen 252 -EEKVKSALRSIYEYNVKYFLGGEMGAVNGVWPDGKPDTSSPQSNEVWTGVEYAVAAHMIQEGMVEEGLEIAKGIYDRYY 330 (365)
T ss_dssp -HHHHHHHHHHHHHHHEE-S-BTTTBGGGGS-T-----------------------------------------------
T ss_pred -HHHHHHHHHHHHHhcCeEccCCCCcEEEeeecccccccccccccccccccccccccccccccccccccccccccccccc
No 71
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.89 E-value=2.6e+02 Score=25.81 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHH
Q 008300 30 RLAMLLIVFVSVTLVVWDRQTLVREHEVELSELNEEVTQLRNLLEE 75 (570)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (570)
.++.++|++++-+++.+....-.++ ..+|++|+.+.+.+|+.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~~~----q~~l~~eL~~~k~el~~ 43 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQQK----QAKLEQELEQAKQELEQ 43 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccchhh----HHHHHHHHHHHHHHHHH
Confidence 4566666666555554433322221 23444455555444433
No 72
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.10 E-value=2.2e+02 Score=25.46 Aligned_cols=48 Identities=15% Similarity=0.320 Sum_probs=25.5
Q ss_pred cccCchhHHHHHHHHHHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHH
Q 008300 24 YLKRPKRLAMLLIVFVSVTLVVWDRQTLVREHEVELSELNEEVTQLRNLL 73 (570)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (570)
+++++|-++.-++..++..+..|.+.+... ..++..+.+.+....+-+
T Consensus 4 ~~~~~w~ii~a~~~~~~~~~~~~l~~~~a~--~~~~~~l~~~~~~~~~Rl 51 (106)
T PF10805_consen 4 FIKKNWGIIWAVFGIAGGIFWLWLRRTYAK--REDIEKLEERLDEHDRRL 51 (106)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHH
Confidence 578888876555555555554444454443 344444544444444433
Done!