Query 008301
Match_columns 570
No_of_seqs 275 out of 760
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 22:58:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 1E-108 5E-113 900.7 44.2 468 55-527 14-505 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 4E-105 1E-109 875.6 46.1 467 57-528 3-530 (530)
3 4fh3_A Poly(A) RNA polymerase 100.0 2.2E-49 7.5E-54 413.2 26.7 259 95-401 27-348 (349)
4 4e8f_A Poly(A) RNA polymerase 100.0 2.1E-48 7.2E-53 415.7 27.8 278 81-408 43-383 (405)
5 3nyb_A Poly(A) RNA polymerase 100.0 1.3E-48 4.3E-53 406.1 24.1 260 81-388 20-299 (323)
6 2ikf_A RNA uridylyl transferas 100.0 3.3E-48 1.1E-52 407.0 18.7 263 75-385 23-348 (353)
7 2b4v_A RNA editing complex pro 100.0 1.8E-40 6.1E-45 359.7 23.3 286 83-389 21-441 (468)
8 3hj4_A Minor editosome-associa 100.0 9.5E-39 3.3E-43 337.1 21.0 273 81-403 6-381 (384)
9 3pq1_A Poly(A) RNA polymerase; 100.0 3.2E-37 1.1E-41 333.0 25.7 234 82-387 134-437 (464)
10 1r89_A TRNA nucleotidyltransfe 99.3 7.9E-11 2.7E-15 126.5 20.7 287 85-446 6-312 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.0 3E-08 1E-12 103.5 23.5 276 85-377 10-322 (349)
12 4at7_A Interleukin enhancer-bi 97.9 0.0015 5E-08 68.4 22.7 264 78-385 23-295 (364)
13 1no5_A Hypothetical protein HI 97.4 0.00056 1.9E-08 60.0 9.3 44 139-184 28-71 (114)
14 4at7_B NF90, interleukin enhan 97.4 0.02 6.8E-07 60.4 21.8 263 94-385 22-327 (383)
15 1wot_A Putative minimal nucleo 97.0 0.00091 3.1E-08 57.2 5.9 48 107-167 7-54 (98)
16 1ylq_A Putative nucleotidyltra 97.0 0.002 6.7E-08 54.9 7.6 28 139-166 18-46 (96)
17 2rff_A Putative nucleotidyltra 96.9 0.00098 3.3E-08 58.6 5.3 54 102-167 9-62 (111)
18 4ebj_A Aminoglycoside nucleoti 95.2 0.023 7.7E-07 57.0 6.0 56 100-167 14-69 (272)
19 1kny_A Kntase, kanamycin nucle 94.5 0.042 1.4E-06 54.5 5.8 29 139-167 32-60 (253)
20 2fmp_A DNA polymerase beta; nu 93.9 0.25 8.5E-06 51.3 10.4 117 137-288 171-298 (335)
21 2bcq_A DNA polymerase lambda; 92.2 0.38 1.3E-05 49.9 8.9 116 137-288 168-292 (335)
22 3jz0_A Lincosamide nucleotidyl 91.6 0.37 1.3E-05 49.1 7.7 101 93-219 12-116 (287)
23 2ihm_A POL MU, DNA polymerase 89.0 0.97 3.3E-05 47.3 8.5 51 137-189 175-225 (360)
24 1jaj_A DNA polymerase beta-lik 88.7 0.46 1.6E-05 45.0 5.1 110 135-288 28-142 (174)
25 3b0x_A DNA polymerase beta fam 86.3 2.8 9.7E-05 46.2 10.5 107 138-289 180-286 (575)
26 1jms_A Terminal deoxynucleotid 86.0 4.1 0.00014 42.9 11.1 52 137-189 195-247 (381)
27 1v4a_A Glutamate-ammonia-ligas 76.7 4.4 0.00015 43.3 7.3 48 137-184 153-208 (440)
28 3k7d_A Glutamate-ammonia-ligas 66.8 13 0.00046 40.3 8.3 48 137-184 233-289 (498)
29 2fcl_A Hypothetical protein TM 57.2 25 0.00084 32.7 7.2 71 137-216 32-107 (169)
30 2pbe_A AAD6, aminoglycoside 6- 44.3 23 0.0008 35.7 5.2 76 139-219 24-110 (294)
31 2w9m_A Polymerase X; SAXS, DNA 38.5 48 0.0017 36.4 6.9 94 141-289 182-276 (578)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=1.3e-108 Score=900.66 Aligned_cols=468 Identities=31% Similarity=0.547 Sum_probs=425.0
Q ss_pred CCCCCccccCCCCCCCCCCCCChHHHHhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhh
Q 008301 55 PCNSPVFLVPSFNFPLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQI 134 (570)
Q Consensus 55 ~~~~p~l~v~~p~~~l~~e~~~~~d~~~s~~L~~~L~~~~~~ps~eE~~~R~~vl~~L~~iv~~w~~~v~~~~~~~~~~~ 134 (570)
++.+.++||++| ++.+.|++.|+++|++|+++|++++++||+||.++|++|+++|+++|++|+++++.++|++++++
T Consensus 14 ~~~~~~~g~~~p---is~~~p~~~d~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~ 90 (514)
T 1q79_A 14 QPPQKHYGITSP---ISLAAPKETDALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVI 90 (514)
T ss_dssp -----CCSSSCC---SCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCcccccCCCCC---CcCCCCCHHHHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhc
Confidence 456788999999 55666889999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCeEEEEecccccCCCCCCCceeEEeecCCCccchHHHHHHHHHHHhcCCCcceEEEeccCccceEEEEECCeeeccc
Q 008301 135 AETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLP 214 (570)
Q Consensus 135 ~~~~~~I~~FGSy~lGv~~p~SDID~l~v~p~~~~~~~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~vDLs 214 (570)
...+++|++||||++|+|+|+||||++|++|.+++ +++||..++++|++.++++++++|++|+||||||+++||+|||+
T Consensus 91 ~~~~~~v~~FGS~~lG~~~p~SDID~~~v~p~~~~-~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~ 169 (514)
T 1q79_A 91 ENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVD-RSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDIL 169 (514)
T ss_dssp TTCBCEEEEEHHHHHTCCCTTCCEEEEEEECTTSC-HHHHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEE
T ss_pred ccCCceEEEeeeeccCCCCCCCceeEEEecCCcCC-HHHHHHHHHHHHhcCccCceEEEecCCcccEEEEEECCeeEEEE
Confidence 89999999999999999999999999999999987 47999999999999999999999999999999999999999999
Q ss_pred cccccccCCCccccCCCchhccccchhhhhccchhhhHHHHHHhcCCccchhHHHHHHHHHHHHhCcCCCCCCcccHHHH
Q 008301 215 YACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHL 294 (570)
Q Consensus 215 f~~l~~~~ip~~l~~~~~~lL~~ld~~s~rSLnG~Rv~~~Il~lvp~~~~Fr~llr~IK~WAk~RgIys~~~G~Lgg~s~ 294 (570)
||+++...+|+++++.|+++|+++|+++++||||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|
T Consensus 170 f~~~~~~~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~ 249 (514)
T 1q79_A 170 FARLALQTIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSW 249 (514)
T ss_dssp EEECSCSSBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHH
T ss_pred EecCCcccCcccccCCchhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCCCceeecCC-----CCCCCCCC---CCCCCcceeeCCCCCCCcccCcc
Q 008301 295 AILVAHVCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDP-----MLPAAGYP---SETRSLMPIRLPCSPHEYCHSNI 366 (570)
Q Consensus 295 aiLva~vcQl~Pn~sl~~LL~~FF~~Ys~wdW~~pV~l~~g-----~~~~~~~~---~~~~~~MpIitP~~P~~N~a~nV 366 (570)
+||||++||+||++++++||.+||++|++|||++||+++++ +.+.|++. .++.|+|||+||++|++|+|+||
T Consensus 250 ~lLVa~~~Ql~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nV 329 (514)
T 1q79_A 250 AMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNV 329 (514)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccC
Confidence 99999999999999999999999999999999999998543 12445442 11248999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhhCCCCChhhccCCCCchhhccceeEEEEEeCChhcccchhhhhHHHHHHHHHhhhhcc
Q 008301 367 TRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSASNQDDLGDWVGWVKSRFRSLILKLEEVQ 446 (570)
Q Consensus 367 s~stl~~I~~Ef~rA~~il~~i~~~~~~W~~Lf~~~~Ff~~y~~yl~i~v~a~~~~~~~~w~G~vESrlr~Lv~~LE~~~ 446 (570)
|.+|+++|++||+||+++|+++..++.+|++||++++||.+|+|||+|+++|.+++++.+|.||||||||.|+.+||+.+
T Consensus 330 s~st~~~I~~Ef~rA~~il~~i~~~~~~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~~ 409 (514)
T 1q79_A 330 SVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNE 409 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred C--ccCCCCCCCcCCCC----CCCceEEEEeEecCC---------CcccchHHHHHHHHHHHHcc-CCCCCceEEEEEec
Q 008301 447 G--LCDPNPTEYIDVDV----TEPHIVFYWGLQPGR---------TNLLDIVAVEKDFLKNIHNG-FQGSPGRMGLLVVQ 510 (570)
Q Consensus 447 ~--~~~p~P~~~~~~~~----~~~~~~~~iGL~~~~---------~~~~d~~~~~~~F~~~i~~~-~~~~~~~i~vs~vk 510 (570)
. .+||||.+|.+... .+++++|||||+++. ..++||+.++++|++.|+++ .+...++|+|+|||
T Consensus 410 ~i~~a~~~P~~f~~~~~~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~i~v~~vk 489 (514)
T 1q79_A 410 FITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVK 489 (514)
T ss_dssp TEEEEEECSCCEECCCSCTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEE
T ss_pred CceeeecCccccCCccccccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcEEEEEEec
Confidence 4 37999999977643 356789999998743 24699999999999999985 44456799999999
Q ss_pred CCCCCCCcccCCCCccc
Q 008301 511 ASQLSKSSQLDFGSGRR 527 (570)
Q Consensus 511 ~~~Lp~~v~~~~g~~~~ 527 (570)
+++||++| +++|-+++
T Consensus 490 ~~~Lp~~v-~~~~~~~~ 505 (514)
T 1q79_A 490 RKQLHQLL-PSHVLQKK 505 (514)
T ss_dssp HHHHGGGC-C-------
T ss_pred hHHCchhh-cchhccCC
Confidence 99999999 66665444
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=4.4e-105 Score=875.63 Aligned_cols=467 Identities=32% Similarity=0.514 Sum_probs=428.3
Q ss_pred CCCccccCCCCCCCCCCCCChHHHHhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhcc
Q 008301 57 NSPVFLVPSFNFPLNPSVLDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAE 136 (570)
Q Consensus 57 ~~p~l~v~~p~~~l~~e~~~~~d~~~s~~L~~~L~~~~~~ps~eE~~~R~~vl~~L~~iv~~w~~~v~~~~~~~~~~~~~ 136 (570)
.+..+||++| +..+.|++.|++++.+|+++|++++++||+||.++|++|+++|+++|++|++++++++|+++++++.
T Consensus 3 ~~~~~g~t~p---is~~~p~~~d~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~ 79 (530)
T 2hhp_A 3 SQKVFGITGP---VSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARD 79 (530)
T ss_dssp -CGGGCSSCC---SCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CcccCccCCC---CcCCCCChHHhhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccc
Confidence 3567899999 5566678999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCeEEEEecccccCCCCCCCceeEEeecCCCccchHHHHHHHHHHHhcCCCcceEEEeccCccceEEEEECCeeeccccc
Q 008301 137 THATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYA 216 (570)
Q Consensus 137 ~~~~I~~FGSy~lGv~~p~SDID~l~v~p~~~~~~~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~vDLsf~ 216 (570)
++++|++||||++|+|+|+||||++|++|.+++ +++||..++++|++.++++++++|++|+||||||+++||+|||+|+
T Consensus 80 ~~~~V~~FGSy~lG~~~p~SDID~~v~~p~~~~-~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~ 158 (530)
T 2hhp_A 80 AGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVT-REDFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICA 158 (530)
T ss_dssp TBCEEEEEHHHHHTCCCTTCCEEEEEEECTTCC-HHHHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEE
T ss_pred cCceEEEecccccCCCCCCCceeEEEecCCcCC-HHHHHHHHHHHHhcCCCCceEEEecCCcccEEEEEECCEeeEEEEe
Confidence 999999999999999999999999999999987 4799999999999999999999999999999999999999999999
Q ss_pred cccccCCCccccCCCchhccccchhhhhccchhhhHHHHHHhcCCccchhHHHHHHHHHHHHhCcCCCCCCcccHHHHHH
Q 008301 217 CLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAI 296 (570)
Q Consensus 217 ~l~~~~ip~~l~~~~~~lL~~ld~~s~rSLnG~Rv~~~Il~lvp~~~~Fr~llr~IK~WAk~RgIys~~~G~Lgg~s~ai 296 (570)
++++.++|+++++.|+++|+++|++|++||||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+|
T Consensus 159 ~~~~~~ip~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~ 238 (530)
T 2hhp_A 159 RLDQPQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAM 238 (530)
T ss_dssp ECSSSCBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHH
T ss_pred ccccccCCcccCCCchhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHH
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHhhcCCCCCceeecCC---C--CCCCCCCC---CCCCcceeeCCCCCCCcccCccCh
Q 008301 297 LVAHVCQNHPKGSLNTLVANFFKTYAYWPWPTPVMLQDP---M--LPAAGYPS---ETRSLMPIRLPCSPHEYCHSNITR 368 (570)
Q Consensus 297 Lva~vcQl~Pn~sl~~LL~~FF~~Ys~wdW~~pV~l~~g---~--~~~~~~~~---~~~~~MpIitP~~P~~N~a~nVs~ 368 (570)
|||++||+||++++++||.+||++||+|||++||+++.. . .+.|++.. +.+|+|||+||++|++|+|+|||.
T Consensus 239 LVa~~lQl~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~ 318 (530)
T 2hhp_A 239 LVARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITE 318 (530)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCH
Confidence 999999999999999999999999999999999998642 2 23454321 124899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhCCCCChhhccCCCCchhhccceeEEEEEeC-ChhcccchhhhhHHHHHHHHHhhhhccC
Q 008301 369 STFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKYARFVRVYLSAS-NQDDLGDWVGWVKSRFRSLILKLEEVQG 447 (570)
Q Consensus 369 stl~~I~~Ef~rA~~il~~i~~~~~~W~~Lf~~~~Ff~~y~~yl~i~v~a~-~~~~~~~w~G~vESrlr~Lv~~LE~~~~ 447 (570)
+|+++|++||+||+++|++++.++.+|++||++++||.+|+|||+|++++. +++++.+|.||||||+|.|+.+||+.+.
T Consensus 319 st~~~I~~Ef~rA~~ll~~i~~~~~~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~~~~ 398 (530)
T 2hhp_A 319 STKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVLAG 398 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhcccC
Confidence 999999999999999999999999999999999999999999999999997 9999999999999999999999999765
Q ss_pred c--cCCCCCCCcCC-------------------------------------C------CCCCceEEEEeEecC---CCcc
Q 008301 448 L--CDPNPTEYIDV-------------------------------------D------VTEPHIVFYWGLQPG---RTNL 479 (570)
Q Consensus 448 ~--~~p~P~~~~~~-------------------------------------~------~~~~~~~~~iGL~~~---~~~~ 479 (570)
+ +||||.+|.+. + ...+.++|||||+++ .+++
T Consensus 399 i~~a~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~~~~~~ 478 (530)
T 2hhp_A 399 IKIAHPFTKPFESSYCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIENKKEK 478 (530)
T ss_dssp EEEEEECSSCEEEEEECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC----CCC
T ss_pred ceeeecCCcccCccccccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCCCCCce
Confidence 4 69999887421 0 012347899999986 3679
Q ss_pred cchHHHHHHHHHHHHcc-C-CCC-Cce-EEEEEecCCCCCCCcccCCCCcccc
Q 008301 480 LDIVAVEKDFLKNIHNG-F-QGS-PGR-MGLLVVQASQLSKSSQLDFGSGRRT 528 (570)
Q Consensus 480 ~d~~~~~~~F~~~i~~~-~-~~~-~~~-i~vs~vk~~~Lp~~v~~~~g~~~~~ 528 (570)
+||+.++++|++.|+++ - |+. .++ |.|+|||+++||++| +++||+||+
T Consensus 479 ~di~~~~~~F~~~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v-~~~~~~~~~ 530 (530)
T 2hhp_A 479 VDIHIPCTEFVNLCRSFNEDYGDHKVFNLALRFVKGYDLPDEV-FDENEKRPS 530 (530)
T ss_dssp CCCHHHHHHHHHHHHHTSTTTTCSSSEEEEEEEEEGGGCCGGG-SCTTSCCCC
T ss_pred EeChhHHHHHHHHHHhhhhhcccCCcceEEEEEechhhCCHhh-ccCCCcCCC
Confidence 99999999999999984 2 444 457 999999999999999 899998873
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=2.2e-49 Score=413.25 Aligned_cols=259 Identities=19% Similarity=0.289 Sum_probs=218.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhccCCeEEEEecccccCCCCCCCceeEEeecCCCccchHHH
Q 008301 95 LVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDF 174 (570)
Q Consensus 95 ~~ps~eE~~~R~~vl~~L~~iv~~w~~~v~~~~~~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~p~~~~~~~~f 174 (570)
+.||+||.++|++++++|+++++++. ++++|++|||+++|+++|+||||++|+.|.... .+.+
T Consensus 27 ~~pt~~e~~~R~~~~~~l~~~i~~~~----------------p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~-~~~~ 89 (349)
T 4fh3_A 27 IKISDKEFKEKRAALDTLRLCLKRIS----------------PDAELVAFGSLESGLALKNSDMDLCVLMDSRVQ-SDTI 89 (349)
T ss_dssp HBCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCEEEEESHHHHTCCBSSCCEEEEEECCTTSC-HHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEEeeccCCCCCCCCCEEEEEecCCCCC-hHHH
Confidence 56999999999999999999998632 478999999999999999999999999998876 4566
Q ss_pred HHHHHHHHhcCCCcceEEEeccCccceEEEEE-------CCeeeccccccccccCCCccccCCCchhccccchhhhhccc
Q 008301 175 FVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKF-------DGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLS 247 (570)
Q Consensus 175 f~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~-------~GI~vDLsf~~l~~~~ip~~l~~~~~~lL~~ld~~s~rSLn 247 (570)
+..+.+.+.+ ...+++.|.+|+||||||.+ .|++||++|++ .+
T Consensus 90 ~~~~~~~~~~--~~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~----------------------------~~ 139 (349)
T 4fh3_A 90 ALQFYEELIA--EGFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNN----------------------------RL 139 (349)
T ss_dssp HHHHHHHHHH--TTEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESC----------------------------HH
T ss_pred HHHHHHHHHh--hcccceEeeeeeeeeEEEEecccccccccceeecCcCc----------------------------ch
Confidence 6666555554 24577889999999999986 37999999986 36
Q ss_pred hhhhHHHHHHhcCCccchhHHHHHHHHHHHHhCcCCCCCCcccHHHHHHHHHHHHhh------CCC--------------
Q 008301 248 GVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQN------HPK-------------- 307 (570)
Q Consensus 248 G~Rv~~~Il~lvp~~~~Fr~llr~IK~WAk~RgIys~~~G~Lgg~s~aiLva~vcQl------~Pn-------------- 307 (570)
|++.++.|.++++.+++||+++++||+|||+||||++..|+||||+|+|||+++||. +|+
T Consensus 140 g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~ 219 (349)
T 4fh3_A 140 AIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDG 219 (349)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETT
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999995 232
Q ss_pred ------------------CCHHHHHHHHHHHhh-cCCCCCcee-ecCCC-C-----CCCC-------C---CCCCCCcce
Q 008301 308 ------------------GSLNTLVANFFKTYA-YWPWPTPVM-LQDPM-L-----PAAG-------Y---PSETRSLMP 351 (570)
Q Consensus 308 ------------------~sl~~LL~~FF~~Ys-~wdW~~pV~-l~~g~-~-----~~~~-------~---~~~~~~~Mp 351 (570)
.++++||.+||+||| +|||++.++ ++.++ . ..|. . ....++.|+
T Consensus 220 ~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~l~ 299 (349)
T 4fh3_A 220 FDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILA 299 (349)
T ss_dssp EECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC---------------CCSSC
T ss_pred cccccccchhhcccccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhcccccccccCcccccCCCCceEE
Confidence 479999999999999 699998765 44331 1 0121 0 011237899
Q ss_pred eeCCCCCCCcccCccChhhHHHHHHHHHHHHHHHHhhhCCCCChhhccCC
Q 008301 352 IRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEP 401 (570)
Q Consensus 352 IitP~~P~~N~a~nVs~stl~~I~~Ef~rA~~il~~i~~~~~~W~~Lf~~ 401 (570)
|+||++|.+|+|++|+..++..|++||+||+++|++.. ...+|++|||.
T Consensus 300 IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~-~~~~~~~lfe~ 348 (349)
T 4fh3_A 300 IEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS-YPIPYDSLFEE 348 (349)
T ss_dssp BBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS-SSCCGGGGGSC
T ss_pred EECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc-cCCCHHHHhhc
Confidence 99999999999999999999999999999999998643 35689999986
No 4
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=2.1e-48 Score=415.70 Aligned_cols=278 Identities=18% Similarity=0.268 Sum_probs=236.3
Q ss_pred HhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhccCCeEEEEecccccCCCCCCCceeE
Q 008301 81 ERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDA 160 (570)
Q Consensus 81 ~~s~~L~~~L~~~~~~ps~eE~~~R~~vl~~L~~iv~~w~~~v~~~~~~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~ 160 (570)
++++++.++++. +.||+||.++|++++++|+++++++. ++++|++|||+++|+++|+||||+
T Consensus 43 ~L~~~i~~~~~~--i~Pt~eE~~~R~~v~~~l~~~i~~~~----------------p~~~v~~fGS~~~G~~~~~SDiDl 104 (405)
T 4e8f_A 43 EFTKFCYEVYNE--IKISDKEFKEKRAALDTLRLCLKRIS----------------PDAELVAFGSLESGLALKNSDMDL 104 (405)
T ss_dssp HHHHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEEEEESHHHHTCCBSSCCEEE
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEEeeccCCCCCCCCCEEE
Confidence 578888888885 88999999999999999999999753 468999999999999999999999
Q ss_pred EeecCCCccchHHHHHHHHHHHhcCCCcceEEEeccCccceEEEEE---C----CeeeccccccccccCCCccccCCCch
Q 008301 161 LCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKF---D----GILIDLPYACLHVLSVPENVDVLNPF 233 (570)
Q Consensus 161 l~v~p~~~~~~~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~---~----GI~vDLsf~~l~~~~ip~~l~~~~~~ 233 (570)
+|+.|.... .++++..+++.|++. ..+++.|.+|+||||||.+ + ||+|||+|++.
T Consensus 105 ~v~~~~~~~-~~~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~--------------- 166 (405)
T 4e8f_A 105 CVLMDSRVQ-SDTIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNR--------------- 166 (405)
T ss_dssp EEECCC----CTTHHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCH---------------
T ss_pred EEEecCCCC-HHHHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeeccc---------------
Confidence 999987554 246888899999986 5688999999999999995 4 99999999973
Q ss_pred hccccchhhhhccchhhhHHHHHHhcCCccchhHHHHHHHHHHHHhCcCCCCCCcccHHHHHHHHHHHH-hh-----CCC
Q 008301 234 FLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVC-QN-----HPK 307 (570)
Q Consensus 234 lL~~ld~~s~rSLnG~Rv~~~Il~lvp~~~~Fr~llr~IK~WAk~RgIys~~~G~Lgg~s~aiLva~vc-Ql-----~Pn 307 (570)
+|++.+..|..++..+++||+++++||+|||+||||++..|+||||+|+|||+++| |. +|+
T Consensus 167 -------------~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~ 233 (405)
T 4e8f_A 167 -------------LAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPN 233 (405)
T ss_dssp -------------HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCC
T ss_pred -------------chHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCc
Confidence 58888899998888899999999999999999999999999999999999999999 63 232
Q ss_pred --------------------------------CCHHHHHHHHHHHhh-cCCCCCcee-ec-CCCC-----CCCCCC----
Q 008301 308 --------------------------------GSLNTLVANFFKTYA-YWPWPTPVM-LQ-DPML-----PAAGYP---- 343 (570)
Q Consensus 308 --------------------------------~sl~~LL~~FF~~Ys-~wdW~~pV~-l~-~g~~-----~~~~~~---- 343 (570)
.++++||.+||+||| +|||.+.++ ++ .|.. ..|...
T Consensus 234 Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~~g~~~~K~~k~w~~~~~~~ 313 (405)
T 4e8f_A 234 LLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHT 313 (405)
T ss_dssp SSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSSTTCCCBHHHHTCCC-----
T ss_pred hhhcccccccccCCeeeccccchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEEEecCCccccccccccccccccc
Confidence 479999999999999 899998654 66 4432 134322
Q ss_pred ------CCCCCcceeeCCCCCCCcccCccChhhHHHHHHHHHHHHHHHHhhhCCCCChhhccCCCCchhhc
Q 008301 344 ------SETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWHFLFEPFPYSKKY 408 (570)
Q Consensus 344 ------~~~~~~MpIitP~~P~~N~a~nVs~stl~~I~~Ef~rA~~il~~i~~~~~~W~~Lf~~~~Ff~~y 408 (570)
.+.++.|+|+||++|.+|+|++|+..+++.|++||+||+++|++... +.+|++||+++++..+.
T Consensus 314 g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~-~~~w~~Lf~~~~~~~~~ 383 (405)
T 4e8f_A 314 GSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSY-PIPYDSLFEEAPIPPRR 383 (405)
T ss_dssp --------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSS-SCCGGGGGSCCCCC---
T ss_pred ccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhcc-CCCHHHHhCcCCCcccc
Confidence 01247899999999999999999999999999999999999986542 67999999999988753
No 5
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-48 Score=406.10 Aligned_cols=260 Identities=21% Similarity=0.309 Sum_probs=227.6
Q ss_pred HhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhccCCeEEEEecccccCCCCCCCceeE
Q 008301 81 ERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDA 160 (570)
Q Consensus 81 ~~s~~L~~~L~~~~~~ps~eE~~~R~~vl~~L~~iv~~w~~~v~~~~~~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~ 160 (570)
.++++|.++++. +.||+||.++|++++++|+++++++. ++++|++|||+++|+++|+||||+
T Consensus 20 ~L~~Ei~~f~~~--i~Pt~eE~~~R~~~~~~l~~~~~~~~----------------p~~~v~~fGS~~~g~~~~~SDiDl 81 (323)
T 3nyb_A 20 WLTFEIKDFVAY--ISPSREEIEIRNQTISTIREAVKQLW----------------PDADLHVFGSYSTDLYLPGSDIDC 81 (323)
T ss_dssp HHHHHHHHHHHH--TSCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCCEEEESTTTTTCCCTTSCEEE
T ss_pred HHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEeCccccCCCCCCCCceE
Confidence 478888888885 88999999999999999999999753 467999999999999999999999
Q ss_pred EeecCCCccchHHHHHHHHHHHhcCCCcceEEEeccCccceEEEEE--CCeeeccccccccccCCCccccCCCchhcccc
Q 008301 161 LCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKF--DGILIDLPYACLHVLSVPENVDVLNPFFLRDL 238 (570)
Q Consensus 161 l~v~p~~~~~~~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~--~GI~vDLsf~~l~~~~ip~~l~~~~~~lL~~l 238 (570)
+|++|.......+++..+++.|++.+.+++++.|.+|+||||||++ +||+|||+|++.
T Consensus 82 ~v~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~-------------------- 141 (323)
T 3nyb_A 82 VVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERT-------------------- 141 (323)
T ss_dssp EECSSCCGGGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSCS--------------------
T ss_pred EEecCCCChhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecCc--------------------
Confidence 9999986533347888999999998888999999999999999996 799999999862
Q ss_pred chhhhhccchhhhHHHHHHhcCCccchhHHHHHHHHHHHHhCcCCCCCCcccHHHHHHHHHHHHhhCCC---------CC
Q 008301 239 DETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHPK---------GS 309 (570)
Q Consensus 239 d~~s~rSLnG~Rv~~~Il~lvp~~~~Fr~llr~IK~WAk~RgIys~~~G~Lgg~s~aiLva~vcQl~Pn---------~s 309 (570)
+|++.++.|.++++.+++||+++++||+|||+||||++..|+||||+|+|||+++||++|+ .+
T Consensus 142 --------~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~ 213 (323)
T 3nyb_A 142 --------NGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDN 213 (323)
T ss_dssp --------STTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGC
T ss_pred --------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCcccc
Confidence 6999999999999999999999999999999999999999999999999999999999985 47
Q ss_pred HHHHHHHHHHHhh-cCCCCCc-eeecCCCC-----CCCCC--CCCCCCcceeeCCCCCCCcccCccChhhHHHHHHHHHH
Q 008301 310 LNTLVANFFKTYA-YWPWPTP-VMLQDPML-----PAAGY--PSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLR 380 (570)
Q Consensus 310 l~~LL~~FF~~Ys-~wdW~~p-V~l~~g~~-----~~~~~--~~~~~~~MpIitP~~P~~N~a~nVs~stl~~I~~Ef~r 380 (570)
+++||.+||+||| +|||++. |.+++|++ ..|.. ..+..+.|+|++|++|.+|++++. ..++.|++||++
T Consensus 214 lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~~~~~~k~~~~~~~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~F~~ 291 (323)
T 3nyb_A 214 LGVLLIEFFELYGKNFGYDDVALGSSDGYPVYFPKSTWSAIQPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKAFAG 291 (323)
T ss_dssp HHHHHHHHHHHHHHTCCTTTEEEEESSSCEEEEEGGGCGGGCSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCCcEEEEecCCcceeeHHhcccccccCCCceEEEeCCCCCCcccccch--HHHHHHHHHHHH
Confidence 8999999999999 9999985 55776642 12321 112237899999999999998874 458899999999
Q ss_pred HHHHHHhh
Q 008301 381 GHNTTRDL 388 (570)
Q Consensus 381 A~~il~~i 388 (570)
|+++|++-
T Consensus 292 A~~~L~~~ 299 (323)
T 3nyb_A 292 AFDLLTNR 299 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999753
No 6
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=3.3e-48 Score=407.01 Aligned_cols=263 Identities=18% Similarity=0.210 Sum_probs=220.7
Q ss_pred CChHHHHhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhccCCeEEEEecccc-cCCCC
Q 008301 75 LDQMDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYG-LGVHG 153 (570)
Q Consensus 75 ~~~~d~~~s~~L~~~L~~~~~~ps~eE~~~R~~vl~~L~~iv~~w~~~v~~~~~~~~~~~~~~~~~I~~FGSy~-lGv~~ 153 (570)
|++.+ ++++|++++++ ..++.+|.++|++++++|++++++.. ++++|++|||++ +|+++
T Consensus 23 P~~~~--l~~~l~~~~~~--~~~~~~e~~~r~~~~~~l~~~i~~~~----------------p~~~v~~FGS~~vtGl~l 82 (353)
T 2ikf_A 23 PSPAV--VGRSLVNSFKQ--FVSKDLHTRHVDATYRLVLDCVAAVD----------------PLMRLYTFGSTVVYGVHE 82 (353)
T ss_dssp CCHHH--HHHHHHHHTTT--TCC-----CCHHHHHHHHHHHHHHHC----------------TTCEEEEESHHHHHSSCC
T ss_pred CCHHH--HHHHHHHHHHH--hcCChhhHHHHHHHHHHHHHHHHHHC----------------CCcEEEEecCccccCCCC
Confidence 33455 48899999986 56899999999999999999998631 578999999997 99999
Q ss_pred CCCceeEEeecCCCcc--------------chHHHHHHHHHHHhcCCCcceEEEeccCccceEEEEE-CCeeeccccccc
Q 008301 154 SESDIDALCLGPEFAT--------------MAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKF-DGILIDLPYACL 218 (570)
Q Consensus 154 p~SDID~l~v~p~~~~--------------~~~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~-~GI~vDLsf~~l 218 (570)
|+||||++|++|.... ...+++..+.+.|++.+.+.+++.|.+|+||||||+. .||+|||+|++.
T Consensus 83 p~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIiK~~~~~~i~~Dis~~n~ 162 (353)
T 2ikf_A 83 KGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKGGGAVDFDITAYRR 162 (353)
T ss_dssp TTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSSSSCEEEEECSSSCEEEEEESCC
T ss_pred CCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCCCCceEEecccceeEEEEEcCCCcEEEEEecCc
Confidence 9999999999874321 0146888899999987778899999999999999998 699999999863
Q ss_pred cccCCCccccCCCchhccccchhhhhccchhhhHHHHHHhcCCccchhHHHHHHHHHHHHhCcCCCCC-CcccHHHHHHH
Q 008301 219 HVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLH-GFLGGVHLAIL 297 (570)
Q Consensus 219 ~~~~ip~~l~~~~~~lL~~ld~~s~rSLnG~Rv~~~Il~lvp~~~~Fr~llr~IK~WAk~RgIys~~~-G~Lgg~s~aiL 297 (570)
+|++.++.|..++..+++||+++++||+|||+||||++.. |+||||+|+||
T Consensus 163 ----------------------------~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~~gG~lssy~l~lm 214 (353)
T 2ikf_A 163 ----------------------------NGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFNLM 214 (353)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCBTTSTTCCBCHHHHHHH
T ss_pred ----------------------------cHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCCCCCCchHHHHHHH
Confidence 6999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHhhC------C------------------------CCCHHHHHHHHHHHhh-cCCCCCcee-ecCCCC-----CCC
Q 008301 298 VAHVCQNH------P------------------------KGSLNTLVANFFKTYA-YWPWPTPVM-LQDPML-----PAA 340 (570)
Q Consensus 298 va~vcQl~------P------------------------n~sl~~LL~~FF~~Ys-~wdW~~pV~-l~~g~~-----~~~ 340 (570)
|+++||.. | +.++++||.+||+||+ +|||+++++ ++.++. ..|
T Consensus 215 vi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi~~~~~~~k~~~~w 294 (353)
T 2ikf_A 215 VVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISLNRPGITTKEELDW 294 (353)
T ss_dssp HHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECSSSSSCEEHHHHTC
T ss_pred HHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcCceEEEcCCCcceechhhcc
Confidence 99999852 2 2468999999999999 799999754 655543 124
Q ss_pred CCC---------CCCCCcceeeCCCCCCCcccCccChhhHHHHHHHHHHHHHHH
Q 008301 341 GYP---------SETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTT 385 (570)
Q Consensus 341 ~~~---------~~~~~~MpIitP~~P~~N~a~nVs~stl~~I~~Ef~rA~~il 385 (570)
... ....+.|+|+||++|.+|+|++|+.++++.|++||+||++++
T Consensus 295 ~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 295 TKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTA 348 (353)
T ss_dssp SHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTT
T ss_pred cccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 310 112378999999999999999999999999999999999886
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=1.8e-40 Score=359.69 Aligned_cols=286 Identities=16% Similarity=0.216 Sum_probs=211.4
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhccCCeEEEEeccc-ccCCCCCCCceeEE
Q 008301 83 SLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSY-GLGVHGSESDIDAL 161 (570)
Q Consensus 83 s~~L~~~L~~~~~~ps~eE~~~R~~vl~~L~~iv~~w~~~v~~~~~~~~~~~~~~~~~I~~FGSy-~lGv~~p~SDID~l 161 (570)
...+.+...+ .-+++++.+.|++++++|++++++|. ++++|++|||+ .+|+++|+||||++
T Consensus 21 ~~~i~~~~~~--~~~~~~~~~~~~~a~~~l~~~v~~~~----------------p~a~v~~FGS~v~~Gl~lp~SDiDl~ 82 (468)
T 2b4v_A 21 GKAIMAENNR--RVGPEHMFRTAIRAQQQLQGLADKWT----------------PDAKVYCCGSMVTYGQMERGSDLDLA 82 (468)
T ss_dssp HHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEEEEETHHHHHSSCBTTCCEEEE
T ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCcEEEEeeCchhcCCCCCCCceeEE
Confidence 5566665554 34889999999999999999999875 57999999999 79999999999999
Q ss_pred eecCCCccc-hHHHH--HHHHHHHhcC-CC--cceEEEeccCccceEEEEEC----------------------------
Q 008301 162 CLGPEFATM-AEDFF--VVLHNMLKSR-PE--VSEIHCVKDAKVPLMRFKFD---------------------------- 207 (570)
Q Consensus 162 ~v~p~~~~~-~~~ff--~~l~~~L~~~-~~--v~~l~~I~~A~VPIIKf~~~---------------------------- 207 (570)
|+.+..... ..... ..+.+.|++. ++ +.++++|.+||||||||++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~ 162 (468)
T 2b4v_A 83 CMFDDPYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKARTALLDV 162 (468)
T ss_dssp EECSSSSCCHHHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHHHHHTEEEEEE
T ss_pred EecCCCCccchhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEeccccccccccccccccccccccccccccc
Confidence 997742211 11111 2478888886 44 58899999999999999821
Q ss_pred ------------------------------C--eeecccccccc-----ccCCCccccCCCch-----hcc---------
Q 008301 208 ------------------------------G--ILIDLPYACLH-----VLSVPENVDVLNPF-----FLR--------- 236 (570)
Q Consensus 208 ------------------------------G--I~vDLsf~~l~-----~~~ip~~l~~~~~~-----lL~--------- 236 (570)
| ..+|++|.+.. ....|+. .+.... .+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~ld~rf~~~ 241 (468)
T 2b4v_A 163 RNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDG-KIMTRGMREDYTRDVLDVRFVPE 241 (468)
T ss_dssp ESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCS-SSSCGGGGGGEEEEESCTTSCCG
T ss_pred cccccccccccchhhhcccccccccccccccccccceeecccccchhhhhcccccc-ccccccccccccccccccccccc
Confidence 2 22446666420 1111211 011000 000
Q ss_pred ----ccchhhhhccchhhhHHHHHHhcCCccc-hhHHHHHHHHHHHHhCcCCCCCCcccHHHHHHHHHHHHhhCC-----
Q 008301 237 ----DLDETSWKSLSGVRANKCILQLVPDLEK-FQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHP----- 306 (570)
Q Consensus 237 ----~ld~~s~rSLnG~Rv~~~Il~lvp~~~~-Fr~llr~IK~WAk~RgIys~~~G~Lgg~s~aiLva~vcQl~P----- 306 (570)
.+| -|.. .+|++.++.|..+...+++ ||+|+++||+|||+||||+++.|+||||+|+|||++++|+..
T Consensus 242 ~~gi~~D-ISfn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v 319 (468)
T 2b4v_A 242 MFMYRWD-ISFV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWV 319 (468)
T ss_dssp GGSSCEE-EESC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCC
T ss_pred ccceEEE-Eecc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCC
Confidence 112 2333 6899999999999988999 999999999999999999999999999999999999998651
Q ss_pred ------------C------------CCHHHHHHHHHHHhh-cCCCCCcee-ecCCCC-----CCCCCCC----CCCCcce
Q 008301 307 ------------K------------GSLNTLVANFFKTYA-YWPWPTPVM-LQDPML-----PAAGYPS----ETRSLMP 351 (570)
Q Consensus 307 ------------n------------~sl~~LL~~FF~~Ys-~wdW~~pV~-l~~g~~-----~~~~~~~----~~~~~Mp 351 (570)
+ .++++||.+||+||+ +|||.+.++ ++.|+. ..|.... ..++.|+
T Consensus 320 ~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~g~~~~K~~~~w~~~~n~~~~~~~~L~ 399 (468)
T 2b4v_A 320 DPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRSYRSDIGWNFPQNKKGTFSYNFC 399 (468)
T ss_dssp CGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSSSCEEHHHHTCCCGGGEETTEECSSC
T ss_pred CcccccchhhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEEecCCcceecccccccccccccCCCcceEE
Confidence 1 269999999999999 899998754 666642 1243211 1124799
Q ss_pred eeCCCCC----CCcccCccChhhHHHHHHHHHHHHHHHHhhh
Q 008301 352 IRLPCSP----HEYCHSNITRSTFYKIRTEFLRGHNTTRDLM 389 (570)
Q Consensus 352 IitP~~P----~~N~a~nVs~stl~~I~~Ef~rA~~il~~i~ 389 (570)
|++|++| .+|+|++|+..+++.|++||++|+++|++..
T Consensus 400 IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 400 IEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp BBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999 9999999999999999999999999998654
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=9.5e-39 Score=337.11 Aligned_cols=273 Identities=18% Similarity=0.213 Sum_probs=215.2
Q ss_pred HhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhccCCeEEEEecccccCCCCCCCceeE
Q 008301 81 ERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDA 160 (570)
Q Consensus 81 ~~s~~L~~~L~~~~~~ps~eE~~~R~~vl~~L~~iv~~w~~~v~~~~~~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~ 160 (570)
+++++++++.+. +.||++|.+.|++++++|++++++-. ++++|++|||+.+|+++|+||||+
T Consensus 6 ~lt~EI~dFy~~--i~PT~eE~~~R~~vv~~l~~ii~~~~----------------p~~~v~~FGS~~tgl~lp~SDiDl 67 (384)
T 3hj4_A 6 EFIRGMMAHYRA--SLPPPEHSVVIHELQKRVLDIGMLAV----------------NKAHVELFGSHVSGFCTPHSDADI 67 (384)
T ss_dssp HHHHHHHHHHHH--HSCCTTHHHHHHHHHHHHHHHHHHHS----------------TTCEEEEESHHHHSCCCTTCCEEE
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCcEEEEeeeccCCCCCCCCCeeE
Confidence 567888888874 88999999999999999999998621 478999999999999999999999
Q ss_pred EeecCCCcc----c-h--HHHHHH---HHHHHhcCCCcceEEEeccCccceEEEEE--CCeeeccccccccccCCCcccc
Q 008301 161 LCLGPEFAT----M-A--EDFFVV---LHNMLKSRPEVSEIHCVKDAKVPLMRFKF--DGILIDLPYACLHVLSVPENVD 228 (570)
Q Consensus 161 l~v~p~~~~----~-~--~~ff~~---l~~~L~~~~~v~~l~~I~~A~VPIIKf~~--~GI~vDLsf~~l~~~~ip~~l~ 228 (570)
++..+.... . + ...... +.+.+.. .+++.+. |.+||||||||.. +|++|||+|++.
T Consensus 68 vI~~~~~~~~~~~~~~~~~~~~lrll~L~k~~~~-~~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn~---------- 135 (384)
T 3hj4_A 68 SLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASA-MGMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGNI---------- 135 (384)
T ss_dssp EEECTTCCGGGTTCHHHHHHHHHHHHHHHHHHHH-HTCEEEE-EECSSSCEEEEECTTTCCEEEEEECCH----------
T ss_pred EEecCCCcccccccchhhHHHHHHHHHHHhhccc-CCeeEEe-ecCcccCEEEEEEcCCCeEEEEEeccc----------
Confidence 999865321 0 0 011111 2222222 3566665 4599999999996 699999999973
Q ss_pred CCCchhccccchhhhhccchhhhHHHHHHhcCC-ccchhHHHHHHHHHHHHhCcCCCCCCcccHHHHHHHHHHHHhhC--
Q 008301 229 VLNPFFLRDLDETSWKSLSGVRANKCILQLVPD-LEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNH-- 305 (570)
Q Consensus 229 ~~~~~lL~~ld~~s~rSLnG~Rv~~~Il~lvp~-~~~Fr~llr~IK~WAk~RgIys~~~G~Lgg~s~aiLva~vcQl~-- 305 (570)
+|++.++.|..+... .++||+|+++||+||++|||+++..|+||||+|++||+++||++
T Consensus 136 ------------------~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~v 197 (384)
T 3hj4_A 136 ------------------GGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGL 197 (384)
T ss_dssp ------------------HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHTS
T ss_pred ------------------chHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCCC
Confidence 588888888888877 44699999999999999999999999999999999999999973
Q ss_pred -CCC------------------------------------CHHHH----HHHHHHHhhcCCCCCc-eeecCCC-C-----
Q 008301 306 -PKG------------------------------------SLNTL----VANFFKTYAYWPWPTP-VMLQDPM-L----- 337 (570)
Q Consensus 306 -Pn~------------------------------------sl~~L----L~~FF~~Ys~wdW~~p-V~l~~g~-~----- 337 (570)
|+. |+|+| |.+||+||+.|||.+- |.|+.+. +
T Consensus 198 LP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~ 277 (384)
T 3hj4_A 198 LPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYE 277 (384)
T ss_dssp SCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHH
T ss_pred CCccccccccCCcccccccHhhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCcccccccc
Confidence 220 37888 9999999999999975 5565431 1
Q ss_pred ---------------CCCC----------C---------------CCCCCCcceeeCCCCCCCcccCccChhhHHHHHHH
Q 008301 338 ---------------PAAG----------Y---------------PSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTE 377 (570)
Q Consensus 338 ---------------~~~~----------~---------------~~~~~~~MpIitP~~P~~N~a~nVs~stl~~I~~E 377 (570)
+.|. + .+..+.++.|++ +.-..||++.|+.+....|+.|
T Consensus 278 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 356 (384)
T 3hj4_A 278 RVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQE 356 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHH
T ss_pred hhhhhhhhhccchhhhhhhhhhhccccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHHHH
Confidence 0010 0 122357899999 9999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCChhhccCCCC
Q 008301 378 FLRGHNTTRDLMRPDFDWHFLFEPFP 403 (570)
Q Consensus 378 f~rA~~il~~i~~~~~~W~~Lf~~~~ 403 (570)
|+||++++.+- +++.+.++.|...+
T Consensus 357 ~~~~~~~~~~~-~~~~~~~~~~~~~~ 381 (384)
T 3hj4_A 357 FNRLREMLIDK-ESELKFDEVFRESD 381 (384)
T ss_dssp HHHHHHHHTTT-GGGCCHHHHTCCCC
T ss_pred HHHHHHHHhcc-cccccHHHHhhhcc
Confidence 99999999763 35667888886543
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=3.2e-37 Score=332.96 Aligned_cols=234 Identities=14% Similarity=0.208 Sum_probs=191.9
Q ss_pred hhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCCCchhhccCCeEEEEecccccCCCCCCCceeE
Q 008301 82 RSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLA-WVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDA 160 (570)
Q Consensus 82 ~s~~L~~~L~~~~~~ps~eE~~~R~~vl~~L~~iv~~-w~~~v~~~~~~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~ 160 (570)
.++++.++++. +.||++|.+.|..++++|++++++ | ++++|++|||+.+|+++|+||||+
T Consensus 134 l~~EI~~f~~~--i~PT~eE~~~R~~vv~~le~ii~~~f-----------------P~a~V~~FGS~~tGL~lp~SDIDl 194 (464)
T 3pq1_A 134 IDDQLNTLLKE--FQLTEENTKLRYLTCSLIEDMAAAYF-----------------PDCIVRPFGSSVNTFGKLGCDLDM 194 (464)
T ss_dssp HHHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHTTTS-----------------TTCEEEEEGGGTSSCCBTTCCEEE
T ss_pred HHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHC-----------------CCCEEEEeCCCccCCCCCCCCeEE
Confidence 34566777764 779999999999999999999985 3 478999999999999999999999
Q ss_pred EeecCCCcc----------------------c--hHHHHHHHHHHHhcC-CCcceEEEeccCccceEEEEE--CCeeecc
Q 008301 161 LCLGPEFAT----------------------M--AEDFFVVLHNMLKSR-PEVSEIHCVKDAKVPLMRFKF--DGILIDL 213 (570)
Q Consensus 161 l~v~p~~~~----------------------~--~~~ff~~l~~~L~~~-~~v~~l~~I~~A~VPIIKf~~--~GI~vDL 213 (570)
++..+.... + ...++..+.+.|++. +++.+++.|.+||||||||.. +||+|||
T Consensus 195 vl~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DI 274 (464)
T 3pq1_A 195 FLDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCAL 274 (464)
T ss_dssp EEECC-----CCSCEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEE
T ss_pred EEecCCcccccccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEE
Confidence 986543210 0 124566777888874 688999999999999999998 4999999
Q ss_pred ccccccccCCCccccCCCchhccccchhhhhccchhhhHHHHHHhcCCccchhHHHHHHHHHHHHhCcCCCCCCc-ccHH
Q 008301 214 PYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGF-LGGV 292 (570)
Q Consensus 214 sf~~l~~~~ip~~l~~~~~~lL~~ld~~s~rSLnG~Rv~~~Il~lvp~~~~Fr~llr~IK~WAk~RgIys~~~G~-Lgg~ 292 (570)
+|++. +|++.+..|..+...++++|+|+++||+|||+|||+++..|+ ||||
T Consensus 275 S~nn~----------------------------~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSY 326 (464)
T 3pq1_A 275 TTNNR----------------------------IALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNF 326 (464)
T ss_dssp ECSCT----------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHH
T ss_pred ecCCC----------------------------cHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcH
Confidence 99973 588999999999888999999999999999999999999997 9999
Q ss_pred HHHHHHHHHHhhCC-----C------------------------------------CCHHHHHHHHHHHhhcCCCCCcee
Q 008301 293 HLAILVAHVCQNHP-----K------------------------------------GSLNTLVANFFKTYAYWPWPTPVM 331 (570)
Q Consensus 293 s~aiLva~vcQl~P-----n------------------------------------~sl~~LL~~FF~~Ys~wdW~~pV~ 331 (570)
+|++||++++|... + .++++||.+||+||++|||.+.++
T Consensus 327 sL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vI 406 (464)
T 3pq1_A 327 SLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXX 406 (464)
T ss_dssp HHHHHHHHHHHSCC-------CCSHHHHTTC---------------------CCCCCCHHHHHHHHHHHGGGCCCCCCCC
T ss_pred HHHHHHHHHHHccCCCcCCChHHhccccCcccceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCccccc
Confidence 99999999999752 1 267999999999999999986543
Q ss_pred ecCCCCCCCCCCCCCCCcceeeCCCCCCCcccCccChhhHHHHHHHHHHHHHHHHh
Q 008301 332 LQDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRD 387 (570)
Q Consensus 332 l~~g~~~~~~~~~~~~~~MpIitP~~P~~N~a~nVs~stl~~I~~Ef~rA~~il~~ 387 (570)
- | ..|++.||+.+.+++++.|+++|..+|+.
T Consensus 407 s-------------------I------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~ 437 (464)
T 3pq1_A 407 X-------------------X------XXXXXXXVSQSQLQKFVDLARESAWILQQ 437 (464)
T ss_dssp C-------------------C------C-------CHHHHHHHHHHHHHHHHHHHC
T ss_pred c-------------------c------ccccccccCHHHHHHHHHHHHHHHHHHhh
Confidence 2 1 78999999999999999999999999974
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.31 E-value=7.9e-11 Score=126.46 Aligned_cols=287 Identities=17% Similarity=0.178 Sum_probs=181.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhccCCeEEEEecccccCCCCCC-CceeEEee
Q 008301 85 SLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSE-SDIDALCL 163 (570)
Q Consensus 85 ~L~~~L~~~~~~ps~eE~~~R~~vl~~L~~iv~~w~~~v~~~~~~~~~~~~~~~~~I~~FGSy~lGv~~p~-SDID~l~v 163 (570)
.+.++|+. +.|+++|.++=+++.+.|...+++ . +.++...|||+-|.++++ ||||+.++
T Consensus 6 ~~~~~l~~--i~P~~~E~~~~~~~~~~I~~~L~~-~-----------------~~~v~~~GS~AkgT~Lrg~sDIDIfv~ 65 (437)
T 1r89_A 6 ILEKALEL--VIPDEEEVRKGREAEEELRRRLDE-L-----------------GVEYVFVGSYARNTWLKGSLEIDVFLL 65 (437)
T ss_dssp HHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHH-H-----------------TCCEEEEHHHHHTCCCTTCCEEEEEEE
T ss_pred HHHHHHHh--hCCCHHHHHHHHHHHHHHHHHHHh-C-----------------CCeEEEeccccCCCcCCCCCCceEEEE
Confidence 34566653 779999999988888888888876 1 248889999999999997 99999999
Q ss_pred cCCCccchHHHH----HHHHHHHhcCCCcceEEEeccCccceEEEEECCeeeccccccccccCCCccccCCCchhccccc
Q 008301 164 GPEFATMAEDFF----VVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPFFLRDLD 239 (570)
Q Consensus 164 ~p~~~~~~~~ff----~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~vDLsf~~l~~~~ip~~l~~~~~~lL~~ld 239 (570)
-|.... ++++- ..+.+.|++ . .+.-|.=|-+...++|+++|+.=|-- +.+..
T Consensus 66 f~~~~~-~e~l~~~~l~~~~e~l~~------~-~~~ya~hpyV~~~f~g~~vDVVP~y~----------v~~g~------ 121 (437)
T 1r89_A 66 FPEEFS-KEELRERGLEIGKAVLDS------Y-EIRYAEHPYVHGVVKGVEVDVVPCYK----------LKEPK------ 121 (437)
T ss_dssp ECTTSC-HHHHHHHHHHHHHHHSSS------E-EEEESSSEEEEEEETTEEEEEEEEEC----------CSSSS------
T ss_pred cCCCCC-HHHHHHHHHHHHHHHHHH------h-hhhccCCceEEEEecceEEEEEEEEE----------ccCCc------
Confidence 987654 33432 223333332 1 25566678888888999999965421 11100
Q ss_pred hhhhhccchhhhHHHHHHhcCC-ccchhHHHHHHHHHHHHhCcCCC--CCCcccHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 008301 240 ETSWKSLSGVRANKCILQLVPD-LEKFQPVLRCIKLWAKRRGVYGN--LHGFLGGVHLAILVAHVCQNHPKGSLNTLVAN 316 (570)
Q Consensus 240 ~~s~rSLnG~Rv~~~Il~lvp~-~~~Fr~llr~IK~WAk~RgIys~--~~G~Lgg~s~aiLva~vcQl~Pn~sl~~LL~~ 316 (570)
+. ..++.-+..-.+++-. ...++..+|++|.|.|.-|+|++ ..++++||.+-||++++ .+...+|..
T Consensus 122 ---~~-~tavDrtp~H~~fv~~r~~~~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y------G~f~~vl~~ 191 (437)
T 1r89_A 122 ---NI-KSAVDRTPFHHKWLEGRIKGKENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY------GSFLETVKN 191 (437)
T ss_dssp ---CC-CSHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH------SSHHHHHHH
T ss_pred ---cc-cccccCcHHHHHHHHhhhhhhhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH------cCHHHHHHH
Confidence 00 0122112233333432 22288999999999999999987 56889999999999994 244444444
Q ss_pred HHHHhhcCCCCCceeecCCCCCCCCCCCCCCCcceeeCCCCCCCcccCccChhhHHHHHHHHHHHHHHHHhhhCCCCChh
Q 008301 317 FFKTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSPHEYCHSNITRSTFYKIRTEFLRGHNTTRDLMRPDFDWH 396 (570)
Q Consensus 317 FF~~Ys~wdW~~pV~l~~g~~~~~~~~~~~~~~MpIitP~~P~~N~a~nVs~stl~~I~~Ef~rA~~il~~i~~~~~~W~ 396 (570)
+ + +|..++.+.-. .. ......++.|++|.+|..|+|.++|..++..+..+-+...+ . .. .
T Consensus 192 ~----~--~w~~~~~Id~~---~~--~~~~~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l~---~---ps---~ 251 (437)
T 1r89_A 192 A----R--RWTRRTVIDVA---KG--EVRKGEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFME---A---PS---L 251 (437)
T ss_dssp H----T--TCCTTEEEEGG---GT--EEEECSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHHH---S---CC---G
T ss_pred H----H--HhCCCeEEecC---CC--cccCCCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHHh---C---cc---H
Confidence 3 3 56556665221 11 00012578899999999999999999998888766555532 1 11 3
Q ss_pred hccCCCC--------ch---h-hccceeEEEEEeCChhcccchhhhhHHHHHHHHHhhhhcc
Q 008301 397 FLFEPFP--------YS---K-KYARFVRVYLSASNQDDLGDWVGWVKSRFRSLILKLEEVQ 446 (570)
Q Consensus 397 ~Lf~~~~--------Ff---~-~y~~yl~i~v~a~~~~~~~~w~G~vESrlr~Lv~~LE~~~ 446 (570)
++|.|.+ +- . +=.+.+.|....++.-+- ..-|-++-=.+.|...||+.+
T Consensus 252 ~~f~~~~~~~~~~~~~~~~~~~r~t~~~~~~f~~p~~~~D-~l~pQl~k~~~~i~~~L~~~g 312 (437)
T 1r89_A 252 GFFKPKHPLEIEPERLRKIVEERGTAVFAVKFRKPDIVDD-NLYPQLERASRKIFEFLEREN 312 (437)
T ss_dssp GGGSCCCCCCCCHHHHHHHHHHHTCEEEEEEEECCSCCHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCccccCHHHHHHHHHhCCcEEEEEEECCCCCCcc-cchHHHHHHHHHHHHHHHHCC
Confidence 3443321 11 1 122456666655543222 334666666666777777754
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.03 E-value=3e-08 Score=103.54 Aligned_cols=276 Identities=12% Similarity=0.160 Sum_probs=143.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhccCCeEEEEecccccCCCCCC-CceeEEee
Q 008301 85 SLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSE-SDIDALCL 163 (570)
Q Consensus 85 ~L~~~L~~~~~~ps~eE~~~R~~vl~~L~~iv~~w~~~v~~~~~~~~~~~~~~~~~I~~FGSy~lGv~~p~-SDID~l~v 163 (570)
+|.+++.+ .+.|++++.+.=+++++.|...+++-. .+ + .... ..-.+++..|||+-|.++++ ||||++++
T Consensus 10 ~l~~fi~~-~l~p~~~~~~~i~~~~~~I~~~L~~~~----~~-~-~~~~--~~v~~v~~~GSyargT~lrg~sDiDlvV~ 80 (349)
T 1px5_A 10 DLDKFIED-HLLPNTXFRTQVKEAIDIVXRFLKERC----FQ-G-TADP--VRVSKVVKGGSSGKGTTLRGRSDADLVVF 80 (349)
T ss_dssp GHHHHHHH-HTSCCHHHHHHHHHHHHHHHHHHHHHT----TC-C----C--CEEEEEEEEEEC--------CEEEEEEEE
T ss_pred HHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhhh----cc-c-ccCC--cceEEEEEecCcCCCcccCCCCceeEEEE
Confidence 46667743 478999998877777888777777521 10 0 0000 01237889999999999986 99999999
Q ss_pred cCCCccc------hHHHHHHHHHHHhcC---CCcc-eEEEe-ccCccc-eEEEEE------CCeeeccccccccccCCCc
Q 008301 164 GPEFATM------AEDFFVVLHNMLKSR---PEVS-EIHCV-KDAKVP-LMRFKF------DGILIDLPYACLHVLSVPE 225 (570)
Q Consensus 164 ~p~~~~~------~~~ff~~l~~~L~~~---~~v~-~l~~I-~~A~VP-IIKf~~------~GI~vDLsf~~l~~~~ip~ 225 (570)
.+...+. ...+...+.+.|.+. ..+. ..... ..-+.| -+.|.+ .|++||+.=|--....+..
T Consensus 81 l~~~~~~~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~~~ 160 (349)
T 1px5_A 81 LTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTP 160 (349)
T ss_dssp EESCSCTTHHHHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSCCT
T ss_pred ECCCCchhhHHhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhccccc
Confidence 8764321 134455555556541 1121 22221 111345 266665 4799998654221111100
Q ss_pred cccCCCchhccc-cchhhhhccchhhh---HHHHHHhc-CCccchhHHHHHHHHHHHHhCcCCCCCCcccHHHHHHHHHH
Q 008301 226 NVDVLNPFFLRD-LDETSWKSLSGVRA---NKCILQLV-PDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAH 300 (570)
Q Consensus 226 ~l~~~~~~lL~~-ld~~s~rSLnG~Rv---~~~Il~lv-p~~~~Fr~llr~IK~WAk~RgIys~~~G~Lgg~s~aiLva~ 300 (570)
. .--++....+ +....-..-.|-.. +..=.+++ .+...++.++|++|.|-++.+. ....+.++||.+-+|+++
T Consensus 161 ~-~~~~~~~y~~li~~~~~~~~~g~~~~~~~~~h~~~v~~~~~~~k~lIRLlK~W~~~~~~-~~~~~~~ssy~lELL~~~ 238 (349)
T 1px5_A 161 G-YKPNPEIYVQLIKECKSRGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKK-THGNKLPPQYALELLTVY 238 (349)
T ss_dssp T-SCCCHHHHHHHHHHHHHHTCTTTTGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHT-TCSSCCCCHHHHHHHHHH
T ss_pred c-cCCChHHHHHHHhhccccccCccchhcCHHHHHHHHHhCcHHHHHHHHHHHHHHHHhhh-cccCCCCChHHHHHHHHH
Confidence 0 0001111000 00000000001111 11111222 2346799999999999988764 223467999999999999
Q ss_pred HHhhCCC---CCHHHHHHHHHHHhhcCCCCCceeecCCCCCCCCCCC--------C--CCCcceeeCCCCCCCcccCccC
Q 008301 301 VCQNHPK---GSLNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGYPS--------E--TRSLMPIRLPCSPHEYCHSNIT 367 (570)
Q Consensus 301 vcQl~Pn---~sl~~LL~~FF~~Ys~wdW~~pV~l~~g~~~~~~~~~--------~--~~~~MpIitP~~P~~N~a~nVs 367 (570)
.....+. .++.+-+..+|++-++|. ...|.... +-+..+ . ....--|++|+.|..|++.. +
T Consensus 239 a~e~~~~~~~~~~~~~f~~vle~l~~~~-~~~i~w~~----~y~~~~~~~~~fl~~~l~~~~p~I~DP~dp~~NVa~~-~ 312 (349)
T 1px5_A 239 AWEQGSRKTDFSTAQGFQTVLELVLKHQ-KLCIFWEA----YYDFTNPVVGRCMLQQLKKPRPVILDPADPTGNVGGG-D 312 (349)
T ss_dssp HHHHHTCCSSCCHHHHHHHHHHHHHTGG-GCEECCCS----SCCSSSHHHHHHHHHHHTSSSCEEBCTTCTTCBTTCS-C
T ss_pred HHHhCCCccCCCHHHHHHHHHHHHHhCC-ccceeeec----cccccchhHHhhhhhhhcCCCCeeeCCCCCCCcccCC-c
Confidence 8876654 367788899999888763 11222211 000111 0 00112589999999998877 7
Q ss_pred hhhHHHHHHH
Q 008301 368 RSTFYKIRTE 377 (570)
Q Consensus 368 ~stl~~I~~E 377 (570)
......+..|
T Consensus 313 ~~~~~~~~~~ 322 (349)
T 1px5_A 313 THSWQRLAQE 322 (349)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHHHHH
Confidence 7777766633
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=97.92 E-value=0.0015 Score=68.45 Aligned_cols=264 Identities=15% Similarity=0.131 Sum_probs=161.2
Q ss_pred HHHHhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhccCCeEEEEecccccCCCCCC-C
Q 008301 78 MDEERSLSLVQLMTNEGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSE-S 156 (570)
Q Consensus 78 ~d~~~s~~L~~~L~~~~~~ps~eE~~~R~~vl~~L~~iv~~w~~~v~~~~~~~~~~~~~~~~~I~~FGSy~lGv~~p~-S 156 (570)
.|-..++.|++-=. .+.||++|..+=..++.+++.++..-+. +.|.-+ ..-..|...|||.-|.++.| -
T Consensus 23 ~d~~~~~~llkr~~--~l~Ps~eEq~~v~~lv~kI~~~ld~liv----~pg~~e----~~L~~V~rVGs~aKgtll~G~~ 92 (364)
T 4at7_A 23 DETSFSEALLKRNQ--DLAPNSAEQASILSLVTKINNVIDNLIV----APGTFE----VQIEEVRQVGSYKKGTMTTGHN 92 (364)
T ss_dssp CCHHHHHHHHHHHH--HHSCCHHHHHHHHHHHHHHHHHHHHHHH----CCTTCS----SCEEEEEEEHHHHHTCCCTTCC
T ss_pred ChHHHHHHHHhcCC--ccCCCHHHHHHHHHHHHHHHHHHHhhhc----CCCccc----cccceeEEeccccCCceecCCC
Confidence 35666777776544 4899999999988999999888887542 222211 12258999999999999987 7
Q ss_pred ceeEEeecCCCccch--HHHHHHHHHHHhcCCCcceEEE-eccCccceEEEEECCeeeccccccccccCCCccccCCCch
Q 008301 157 DIDALCLGPEFATMA--EDFFVVLHNMLKSRPEVSEIHC-VKDAKVPLMRFKFDGILIDLPYACLHVLSVPENVDVLNPF 233 (570)
Q Consensus 157 DID~l~v~p~~~~~~--~~ff~~l~~~L~~~~~v~~l~~-I~~A~VPIIKf~~~GI~vDLsf~~l~~~~ip~~l~~~~~~ 233 (570)
|+|++|++-.-.|.. +...+++.+-|+....-..+.. +.+|.+= |+=....+.|=|.. +|+++--.|+.
T Consensus 93 ~~dlVvl~k~lPT~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~~-I~~~~~~v~i~It~-------tsp~lrk~dp~ 164 (364)
T 4at7_A 93 VADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFE-ISSSDATVKILITT-------VPPNLRKLDPE 164 (364)
T ss_dssp EEEEEEEESSCCBHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEEE-EECSSCEEEEEEEE-------CHHHHHTCCTT
T ss_pred ceeEEEEecCCCCHHHHHHHHHHHHHHhhhhccccceeeccCcceEE-EecCCCcEEEEEEe-------CChhhccCChh
Confidence 899999987766621 1233445555554321111111 1111110 00000011111111 12222222222
Q ss_pred hccccc-hhhhhccchhhhHHHHHHhcCCccchhHHHHHHHHHHHHhCcCCCCCCcccHHHHHHHHHHHHhhCC---CCC
Q 008301 234 FLRDLD-ETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHLAILVAHVCQNHP---KGS 309 (570)
Q Consensus 234 lL~~ld-~~s~rSLnG~Rv~~~Il~lvp~~~~Fr~llr~IK~WAk~RgIys~~~G~Lgg~s~aiLva~vcQl~P---n~s 309 (570)
.. +| ..|..+|-.+|-+.++.+-..+ ...+.++|++|.-.++.. .++.|.+|++-+|+.+..-.-| ..+
T Consensus 165 ~~--Ld~~~cl~aLaalRhAkWfq~na~~-s~v~~lIRIlkDlc~R~~----~w~pL~~waLELL~~~Ai~s~~~~~~l~ 237 (364)
T 4at7_A 165 LH--LDIKVLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRFP----GFEPLTPWILDLLGHYAVMNNPTRQPLA 237 (364)
T ss_dssp TB--CCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCG----GGTTCCHHHHHHHHHHHHHSSTTSSCCC
T ss_pred Hh--cCHHHHHHHHHHhhhhHHHHhhccc-cccceeehhhHHHHHhcC----CcCCCCHHHHHHHHHHHHhcCCCCCCcC
Confidence 21 22 3477778888988888776654 667889999999655542 2357888888888877776655 479
Q ss_pred HHHHHHHHHHHhhcCCCCCceeecCCCCCCCCCCCCCCCcceeeCCCCC-CCcccCccChhhHHHHHHHHHHHHHHH
Q 008301 310 LNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCSP-HEYCHSNITRSTFYKIRTEFLRGHNTT 385 (570)
Q Consensus 310 l~~LL~~FF~~Ys~wdW~~pV~l~~g~~~~~~~~~~~~~~MpIitP~~P-~~N~a~nVs~stl~~I~~Ef~rA~~il 385 (570)
+++-+.++|+..+. |-+-. +. --|.+|+.+ ..++....|......|..--+.+.+++
T Consensus 238 ~~~afRRVLElLAs-----------Gillp----~~----~Gi~DPCE~~~~~v~~~lt~qq~e~it~sAQ~~LRll 295 (364)
T 4at7_A 238 LNVAYRRCLQILAA-----------GLFLP----GS----VGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRIL 295 (364)
T ss_dssp HHHHHHHHHHHHHT-----------TTTST----TB----CCCBCTTSSSCCBGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----------CcccC----CC----CCCcCCCCCCCcchhccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999872 21110 00 025678877 456666677776777777777776665
No 13
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.42 E-value=0.00056 Score=60.01 Aligned_cols=44 Identities=20% Similarity=0.125 Sum_probs=32.5
Q ss_pred eEEEEecccccCCCCCCCceeEEeecCCCccchHHHHHHHHHHHhc
Q 008301 139 ATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKS 184 (570)
Q Consensus 139 ~~I~~FGSy~lGv~~p~SDID~l~v~p~~~~~~~~ff~~l~~~L~~ 184 (570)
.+|+.|||++-|-+.++||||++++.+...+ ..+. ..+...|.+
T Consensus 28 ~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~-~~~~-~~l~~~l~~ 71 (114)
T 1no5_A 28 YTVWAFGSRVKGKAKKYSDLDLAIISEEPLD-FLAR-DRLKEAFSE 71 (114)
T ss_dssp SEEEEEGGGTTTCCCTTCCEEEEEECSSCCC-HHHH-HHHHHHHHH
T ss_pred CEEEEEeccCCCCCCCCCCeEEEEEeCCCCC-HHHH-HHHHHHHHh
Confidence 5899999999999999999999999875433 1222 344555554
No 14
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=97.38 E-value=0.02 Score=60.37 Aligned_cols=263 Identities=17% Similarity=0.201 Sum_probs=154.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhCCC-c---------h---------hhc---cCCeEEEEecccc
Q 008301 94 GLVPSTEEEDKRRNVIQKLKEIVL---AWVKRVAWQRRLP-K---------E---------QIA---ETHATILTYGSYG 148 (570)
Q Consensus 94 ~~~ps~eE~~~R~~vl~~L~~iv~---~w~~~v~~~~~~~-~---------~---------~~~---~~~~~I~~FGSy~ 148 (570)
.++|++||.+.=+.++..+++.+| +|+.+.....+-. + + ... -.-.-|.-.|++.
T Consensus 22 ~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~la 101 (383)
T 4at7_B 22 SVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGLVA 101 (383)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEeceec
Confidence 489999999999999999998877 5664432111000 0 0 000 0012366799999
Q ss_pred cCCCCCC-CceeEEeecCCCccchHHHHHHHHHH----HhcCCC-cceE-EEeccCccceEEEEECCeeecccccccccc
Q 008301 149 LGVHGSE-SDIDALCLGPEFATMAEDFFVVLHNM----LKSRPE-VSEI-HCVKDAKVPLMRFKFDGILIDLPYACLHVL 221 (570)
Q Consensus 149 lGv~~p~-SDID~l~v~p~~~~~~~~ff~~l~~~----L~~~~~-v~~l-~~I~~A~VPIIKf~~~GI~vDLsf~~l~~~ 221 (570)
-|+.+.| -+.|+|+++..-.| ..+.+.+.+. |+...+ --++ ..+.+|.+=|-.-....+.|=|++.+....
T Consensus 102 KGlLLkGd~~veLVvlck~kPT--~~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i~i~~~~~p~~~v~I~lTSp~~r 179 (383)
T 4at7_B 102 KGLLLKGDLDLELVLLCKEKPT--TALLDKVADNLAIQLTTVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVR 179 (383)
T ss_dssp HTCCCTTCCEEEEEEEESSCCB--HHHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEEEEECSSSSCCEEEEEEECHHHH
T ss_pred ccceECCCCceeEEEEeCCCCc--HHHHHHHHHHHHHHHhhccCCceEEeecCCcceEEEecCCCCCeEEEEEECCcccc
Confidence 9999975 89999999988776 3555544444 444221 1112 223343221110000123344444332100
Q ss_pred ----CC--CccccCCCchhccccc-hhhhhccchhhhHHHHHHhcCCccchhHHHHHHHHHHHHhCcCCCCCCcccHHHH
Q 008301 222 ----SV--PENVDVLNPFFLRDLD-ETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFLGGVHL 294 (570)
Q Consensus 222 ----~i--p~~l~~~~~~lL~~ld-~~s~rSLnG~Rv~~~Il~lvp~~~~Fr~llr~IK~WAk~RgIys~~~G~Lgg~s~ 294 (570)
.+ .+++...|+.. .|| ..|+.+|-.+|-+.++.+..........++|++|.-.++.. -++-|.+|++
T Consensus 180 e~~~~~~~~~~~~~~dp~d--~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~----~~~pL~~waL 253 (383)
T 4at7_B 180 EEMEKVLAGETLSVNDPPD--VLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVP----TWGPLRGWPL 253 (383)
T ss_dssp HHHHHHHTTCCCCCCCCTT--BCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCG----GGGGGTTHHH
T ss_pred cchhhcccccccccCChhh--cCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcC----CcCCCcHhHH
Confidence 00 01111112110 122 34777888888877766655566677899999999666652 2256888888
Q ss_pred HHHHHHHHhhCC--CCCHHHHHHHHHHHhhcCCCCCceeecCCCCCCCCCCCCCCCcceeeCCCC--CCCcccCccChhh
Q 008301 295 AILVAHVCQNHP--KGSLNTLVANFFKTYAYWPWPTPVMLQDPMLPAAGYPSETRSLMPIRLPCS--PHEYCHSNITRST 370 (570)
Q Consensus 295 aiLva~vcQl~P--n~sl~~LL~~FF~~Ys~wdW~~pV~l~~g~~~~~~~~~~~~~~MpIitP~~--P~~N~a~nVs~st 370 (570)
-+|+.+..-. + ..++++-+.++|+..+. |..- +++ =-|.+|+. |..+.+ ..|.-.
T Consensus 254 ELL~~~ai~s-~~~~l~~~~afRRVLEllas-----------G~lL----p~~----pgI~DPcEk~pt~~~~-~lt~qq 312 (383)
T 4at7_B 254 ELLCEKSIGT-ANRPMGAGEALRRVLECLAS-----------GIVM----PDG----SGIYDPCEKEATDAIG-HLDRQQ 312 (383)
T ss_dssp HHHHHHHHHT-SSSCCCHHHHHHHHHHHHHT-----------TTTS----TTS----CCCBCTTCSSCCBTTT-TCCHHH
T ss_pred HHHHHHHhhC-CCCCCCHHHHHHHHHHHHhc-----------Cccc----CCC----CCccCCCCCCCccccc-cCCHHH
Confidence 8888777653 3 36899999999999883 2110 111 12678988 666555 566777
Q ss_pred HHHHHHHHHHHHHHH
Q 008301 371 FYKIRTEFLRGHNTT 385 (570)
Q Consensus 371 l~~I~~Ef~rA~~il 385 (570)
...|..+-+.+.+++
T Consensus 313 ~e~it~sAQ~~LR~~ 327 (383)
T 4at7_B 313 REDITQSAQHALRLA 327 (383)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 788998888887775
No 15
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=97.00 E-value=0.00091 Score=57.22 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCchhhccCCeEEEEecccccCCCCCCCceeEEeecCCC
Q 008301 107 NVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEF 167 (570)
Q Consensus 107 ~vl~~L~~iv~~w~~~v~~~~~~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~p~~ 167 (570)
++++.+++.+....+ +.++ ..++.|||++.|-+.++||||++++.+..
T Consensus 7 ~~l~~l~~~i~~l~~----~~~v---------~~v~LFGS~arG~~~~~SDiDl~V~~~~~ 54 (98)
T 1wot_A 7 ETLRARREAVLSLCA----RHGA---------VRVRVFGSVARGEAREDSDLDLLVAFEEG 54 (98)
T ss_dssp HHHHHHHHHHHHHHH----HHTC---------SSCEECSHHHHTCCCTTCCCEEEECCCSS
T ss_pred HHHHHHHHHHHHHHH----HcCC---------cEEEEEccccCCCCCCCCCEEEEEEeCCC
Confidence 566666666554332 2221 47999999999999999999999987643
No 16
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=96.96 E-value=0.002 Score=54.91 Aligned_cols=28 Identities=36% Similarity=0.319 Sum_probs=26.3
Q ss_pred eEEEEecccccCCCCCC-CceeEEeecCC
Q 008301 139 ATILTYGSYGLGVHGSE-SDIDALCLGPE 166 (570)
Q Consensus 139 ~~I~~FGSy~lGv~~p~-SDID~l~v~p~ 166 (570)
.+++.|||++-|-+.++ ||||++++.+.
T Consensus 18 ~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 18 AEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp CEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred cEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 69999999999999999 99999998875
No 17
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=96.90 E-value=0.00098 Score=58.63 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhccCCeEEEEecccccCCCCCCCceeEEeecCCC
Q 008301 102 EDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEF 167 (570)
Q Consensus 102 ~~~R~~vl~~L~~iv~~w~~~v~~~~~~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~p~~ 167 (570)
...++++++.+++++....+ ..+ .-..++.|||++-|-+.++||||++++....
T Consensus 9 ~~~~~~i~~~l~~~~~~l~~------~~~------~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~ 62 (111)
T 2rff_A 9 IESQIRMLKLAKEIVEEVAS------SFP------NLEEVYIFGSRARGDYLDTSDIDILFVFKGI 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HCT------TEEEEEEESHHHHSCCCTTCCEEEEEEESSC
T ss_pred ccCHHHHHHHHHHHHHHHHH------HcC------CccEEEEEeeeecCCCCCCCCEEEEEEecCC
Confidence 34567778888777766432 121 1258999999999999999999999988653
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=95.23 E-value=0.023 Score=56.99 Aligned_cols=56 Identities=25% Similarity=0.179 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhccCCeEEEEecccccCCCCCCCceeEEeecCCC
Q 008301 100 EEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEF 167 (570)
Q Consensus 100 eE~~~R~~vl~~L~~iv~~w~~~v~~~~~~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~p~~ 167 (570)
-|.-.|+++.+.|+++++.-.+ .++ . -.+|..||||+-|-+.++||||++++....
T Consensus 14 ~~~~~~q~Vq~eL~~ive~L~~------~~~-~-----i~~I~LFGS~ARG~~~~~SDIDilVv~~~~ 69 (272)
T 4ebj_A 14 RENLYFQGVQHTIARWVDRLRE------EYA-D-----AVAILLKGSYARGDAATWSDIDFDVLVSTQ 69 (272)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH------HCT-T-----EEEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred hhccChHHHHHHHHHHHHHHHH------hcC-C-----ceEEEEEeceeCCCCCCCCceEEEEEecCC
Confidence 3455666776777666654321 121 1 258999999999999999999999997653
No 19
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=94.46 E-value=0.042 Score=54.50 Aligned_cols=29 Identities=34% Similarity=0.534 Sum_probs=26.2
Q ss_pred eEEEEecccccCCCCCCCceeEEeecCCC
Q 008301 139 ATILTYGSYGLGVHGSESDIDALCLGPEF 167 (570)
Q Consensus 139 ~~I~~FGSy~lGv~~p~SDID~l~v~p~~ 167 (570)
..|..|||++-|-..++||||++++....
T Consensus 32 ~~~~lfGS~arg~~~~~SDiD~~v~~~~~ 60 (253)
T 1kny_A 32 KAIGVYGSLGRQTDGPYSDIEMMCVMSTE 60 (253)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred eEEEEEccccCCCCCCCCCeeEEEEecCc
Confidence 58999999999999999999999987654
No 20
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=93.90 E-value=0.25 Score=51.28 Aligned_cols=117 Identities=14% Similarity=0.104 Sum_probs=76.5
Q ss_pred CCeEEEEecccccCCCCCCCceeEEeecCCCccc---hHHHHHHHHHHHhcCCCcceEEEeccCccceE-EEEE------
Q 008301 137 THATILTYGSYGLGVHGSESDIDALCLGPEFATM---AEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLM-RFKF------ 206 (570)
Q Consensus 137 ~~~~I~~FGSy~lGv~~p~SDID~l~v~p~~~~~---~~~ff~~l~~~L~~~~~v~~l~~I~~A~VPII-Kf~~------ 206 (570)
...++..-||||=|--+ .+|||+++..|..... ...+...+.+.|.+.+.++++......+.-++ ++..
T Consensus 171 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~~k~~~v~~l~~~~~~~~ 249 (335)
T 2fmp_A 171 SEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKE 249 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSEEEEEECCCCCTTCCC
T ss_pred CCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCCceEEEEEEeCCcccccC
Confidence 45799999999999877 5699999998853221 12567788889999888887666666553332 2222
Q ss_pred -CCeeeccccccccccCCCccccCCCchhccccchhhhhccchhhhHHHHHHhcCCccchhHHHHHHHHHHHHhCcCCCC
Q 008301 207 -DGILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNL 285 (570)
Q Consensus 207 -~GI~vDLsf~~l~~~~ip~~l~~~~~~lL~~ld~~s~rSLnG~Rv~~~Il~lvp~~~~Fr~llr~IK~WAk~RgIys~~ 285 (570)
.|+.|||-++.... ..-.++-+-.+. .--|.++.||+++|+.=+-
T Consensus 250 ~~~~rVDl~~vp~~~------------------------------~~~aLl~fTGS~----~fnr~lR~~A~~kG~kl~e 295 (335)
T 2fmp_A 250 YPHRRIDIRLIPKDQ------------------------------YYCGVLYFTGSD----IFNKNMRAHALEKGFTINE 295 (335)
T ss_dssp CCCEEEEEEECCGGG------------------------------HHHHHHHHHCCH----HHHHHHHHHHHHTTEEECS
T ss_pred CCceEEEEEEECHHH------------------------------HHHHHHHhhCCH----HHHHHHHHHHHHcCCcccc
Confidence 17899998875310 111222233321 2347788999999976666
Q ss_pred CCc
Q 008301 286 HGF 288 (570)
Q Consensus 286 ~G~ 288 (570)
.|.
T Consensus 296 ~Gl 298 (335)
T 2fmp_A 296 YTI 298 (335)
T ss_dssp SCE
T ss_pred ccc
Confidence 664
No 21
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=92.23 E-value=0.38 Score=49.86 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=74.3
Q ss_pred CCeEEEEecccccCCCCCCCceeEEeecCCCccchHHHHHHHHHHHhcCCCcceEEEec-----cCcc-ceEEEEE---C
Q 008301 137 THATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVK-----DAKV-PLMRFKF---D 207 (570)
Q Consensus 137 ~~~~I~~FGSy~lGv~~p~SDID~l~v~p~~~~~~~~ff~~l~~~L~~~~~v~~l~~I~-----~A~V-PIIKf~~---~ 207 (570)
...++..-||||=|--+ .+|||+++..|.... ...++..+.+.|.+.+.+++.-... ..+. =|.++.. .
T Consensus 168 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~-~~~ll~~v~~~l~~~~~i~~~l~~~~~~g~~~k~~~v~~l~~~~~~ 245 (335)
T 2bcq_A 168 SGLLCVACGSYRRGKAT-CGDVDVLITHPDGRS-HRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRR 245 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTSST-TTTCHHHHHHHHHHTTCEEEEEECCTTSTTCCEEEEEECCSSTTCC
T ss_pred CCcEEEEccccccCCCC-CCCeEEEEecCCchh-hhhHHHHHHHHHHhCCchHHHhhccccCCCCceEEEEEEccCCCCC
Confidence 35789999999999877 469999999887543 3467788888899888887643331 1121 1112221 5
Q ss_pred CeeeccccccccccCCCccccCCCchhccccchhhhhccchhhhHHHHHHhcCCccchhHHHHHHHHHHHHhCcCCCCCC
Q 008301 208 GILIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHG 287 (570)
Q Consensus 208 GI~vDLsf~~l~~~~ip~~l~~~~~~lL~~ld~~s~rSLnG~Rv~~~Il~lvp~~~~Fr~llr~IK~WAk~RgIys~~~G 287 (570)
|+.|||-++.... ..-.++-+-.+. .--|.++.||+++|+-=+-.|
T Consensus 246 ~~rVDl~~vp~~~------------------------------~g~ALl~fTGS~----~fnr~lR~~A~~~G~kL~e~G 291 (335)
T 2bcq_A 246 HRRLDIIVVPYSE------------------------------FACALLYFTGSA----HFNRSMRALAKTKGMSLSEHA 291 (335)
T ss_dssp CEEEEEEECCGGG------------------------------HHHHHHHHHCCH----HHHHHHHHHHHHTTCEECSSC
T ss_pred ceEEEEEEECHHH------------------------------HHHHHHHhhCCH----HHHHHHHHHHHHcCCCccccc
Confidence 7889998875310 011222222321 234788899999988666666
Q ss_pred c
Q 008301 288 F 288 (570)
Q Consensus 288 ~ 288 (570)
.
T Consensus 292 l 292 (335)
T 2bcq_A 292 L 292 (335)
T ss_dssp E
T ss_pred c
Confidence 4
No 22
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=91.61 E-value=0.37 Score=49.08 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=56.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhccCCeEEEEecccccCCCCCCCceeEEeecCCCcc---
Q 008301 93 EGLVPSTEEEDKRRNVIQKLKEIVLAWVKRVAWQRRLPKEQIAETHATILTYGSYGLGVHGSESDIDALCLGPEFAT--- 169 (570)
Q Consensus 93 ~~~~ps~eE~~~R~~vl~~L~~iv~~w~~~v~~~~~~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~p~~~~--- 169 (570)
.|+.|.---.+..++.+++|.+.+++- + .-..|..+||+..|-...-||||++++......
T Consensus 12 ~~~~~~~~~m~~~~e~l~~I~~~~~~d-----------~-----~i~av~l~GS~~~~~~D~~SD~Di~~vV~~~~~~~f 75 (287)
T 3jz0_A 12 SGLVPRGSHMLKQKELIANVKNLTESD-----------E-----RITACMMYGSFTKGEGDQYSDIEFYIFLKHSITSNF 75 (287)
T ss_dssp ----------CHHHHHHHHHHHHHHHC-----------T-----TEEEEEECSGGGTTCCCTTCCEEEEEEECGGGTTTC
T ss_pred cCcCCCCCCccCHHHHHHHHHHHHhcC-----------C-----CEEEEEEECCccCCCCCCccceeEEEEEcCcchhhh
Confidence 367777777777788888888777641 0 124789999999998888999999998644211
Q ss_pred chHHHHHHHHHHHhcCCCcceEEEeccCccceEEEEE-CCeeecccccccc
Q 008301 170 MAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKF-DGILIDLPYACLH 219 (570)
Q Consensus 170 ~~~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~-~GI~vDLsf~~l~ 219 (570)
....+...|..++- ..+...+- .++-+ +|+.||+.|..+.
T Consensus 76 ~~~~Wl~~fG~~~~---------~f~~~~~~-~l~lF~Dg~riDl~l~~~~ 116 (287)
T 3jz0_A 76 DSSNWLFDVAPYLM---------LYKNEYGT-EVVIFDNLIRGEFHFLSEK 116 (287)
T ss_dssp CHHHHHHHHCCEEE---------EEECTTSC-EEEEETTSCEEEEEEEEGG
T ss_pred hhHHHHHHhhhhhe---------Eeecccce-EEEEecCCcEEEEEEeeHH
Confidence 11233332221111 11222332 23444 7999999998764
No 23
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=89.04 E-value=0.97 Score=47.27 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=41.3
Q ss_pred CCeEEEEecccccCCCCCCCceeEEeecCCCccchHHHHHHHHHHHhcCCCcc
Q 008301 137 THATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVS 189 (570)
Q Consensus 137 ~~~~I~~FGSy~lGv~~p~SDID~l~v~p~~~~~~~~ff~~l~~~L~~~~~v~ 189 (570)
+..++..-||||=|--+ .+|||+++..|.... ...++..+.+.|.+.+.++
T Consensus 175 ~~~~v~i~GSyRRgket-~gDvDilit~~~~~~-~~~ll~~v~~~L~~~~~i~ 225 (360)
T 2ihm_A 175 PGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQ-EVGLLPKVMSCLQSQGLVL 225 (360)
T ss_dssp TTCEEEECHHHHTTCSE-ESEEEEEEECSSTTT-TTTHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEccccccCCCc-cCCeEEEEecCChhh-hhhHHHHHHHHHHhCCCee
Confidence 46799999999999877 569999999887543 3468888888898877776
No 24
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=88.65 E-value=0.46 Score=44.96 Aligned_cols=110 Identities=20% Similarity=0.199 Sum_probs=69.8
Q ss_pred ccCCeEEEEecccccCCCCCCCceeEEeecCCCccchHHHHHHHHHHHhc--CCCcc-eEEEeccCccceEEEEE--CCe
Q 008301 135 AETHATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKS--RPEVS-EIHCVKDAKVPLMRFKF--DGI 209 (570)
Q Consensus 135 ~~~~~~I~~FGSy~lGv~~p~SDID~l~v~p~~~~~~~~ff~~l~~~L~~--~~~v~-~l~~I~~A~VPIIKf~~--~GI 209 (570)
+.+++++..-||||=|--+-+ |||+++..|.. ..+.+.|.+ .+.++ ++..-...+.-+ ++.. .|+
T Consensus 28 k~~g~~v~iaGS~RRgket~g-DiDiLit~~~~--------~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~~~~~~~ 97 (174)
T 1jaj_A 28 KILSKNIVAVGSLRREEKMLN-DVDLLIIVPEK--------KLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIEWEKKTY 97 (174)
T ss_dssp EECTTTEEEEEHHHHTCSEEC-CEEEEEEESSH--------HHHHTSSSEEEESSCEEEEEEETTTEEEE-EEESSSCCE
T ss_pred cCCCcEEEEeccccCCCCCCC-CEEEEEecCCH--------HHHHHHHHhccCCceeHhHeecCCCeEEE-EeCCCCCce
Confidence 345778999999999987765 99999988852 234555666 67776 654444444322 3332 689
Q ss_pred eeccccccccccCCCccccCCCchhccccchhhhhccchhhhHHHHHHhcCCccchhHHHHHHHHHHHHhCcCCCCCCc
Q 008301 210 LIDLPYACLHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGF 288 (570)
Q Consensus 210 ~vDLsf~~l~~~~ip~~l~~~~~~lL~~ld~~s~rSLnG~Rv~~~Il~lvp~~~~Fr~llr~IK~WAk~RgIys~~~G~ 288 (570)
.|||-++... . ..-.++-+-.+. .-.+.++.||+++|+.=+-.|-
T Consensus 98 rVDl~~vp~~------~------------------------fg~ALl~fTGSk----~hn~~lR~~A~~kG~~L~e~Gl 142 (174)
T 1jaj_A 98 QLDLFTALAE------E------------------------KPYAIFHFTGPV----SYLIRIRAALKKKNYKLNQYGL 142 (174)
T ss_dssp EEEEEEEETT------C------------------------HHHHHHHHHSCH----HHHHHHHHHHHHTTEEEETTEE
T ss_pred EEEEEEeCHH------H------------------------HHHHHHHhHCCH----HHHHHHHHHHHHcCCCcCcccc
Confidence 9999987632 0 011222222221 2347778999999986666664
No 25
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=86.27 E-value=2.8 Score=46.21 Aligned_cols=107 Identities=16% Similarity=0.091 Sum_probs=70.3
Q ss_pred CeEEEEecccccCCCCCCCceeEEeecCCCccchHHHHHHHHHHHhcCCCcceEEEeccCccceEEEEECCeeecccccc
Q 008301 138 HATILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYAC 217 (570)
Q Consensus 138 ~~~I~~FGSy~lGv~~p~SDID~l~v~p~~~~~~~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~vDLsf~~ 217 (570)
..++..-||||=|--+- +|||+++..|.. + .+.+.|.+.+.+.++......+.-+ ++ -.|+.|||-++.
T Consensus 180 ~~~~~~~Gs~RRgke~~-gDiD~li~~~~~----~----~v~~~l~~~~~~~~~~~~g~~k~~~-~~-~~~~rvDl~~~~ 248 (575)
T 3b0x_A 180 VERAELCGSARRYKDTV-GDLDFLVASREG----E----RAVEGFVRLPQVKEVYAKGKERATV-FL-KNGLQVDLRVVP 248 (575)
T ss_dssp CCEEEECHHHHTTCSEE-SSEEEEEECSSH----H----HHHHHHHTSTTEEEEEEECSSEEEE-EE-TTSCEEEEEEEC
T ss_pred CcEEEEccccccCCCcc-CCeEEEEeCCCH----H----HHHHHHHhCcchhhHhhcCCCceEE-Ec-cCCcEEEEEEEC
Confidence 57999999999998775 499999988853 1 3556677778887665444444332 11 269999999886
Q ss_pred ccccCCCccccCCCchhccccchhhhhccchhhhHHHHHHhcCCccchhHHHHHHHHHHHHhCcCCCCCCcc
Q 008301 218 LHVLSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVLRCIKLWAKRRGVYGNLHGFL 289 (570)
Q Consensus 218 l~~~~ip~~l~~~~~~lL~~ld~~s~rSLnG~Rv~~~Il~lvp~~~~Fr~llr~IK~WAk~RgIys~~~G~L 289 (570)
... ..-.++-+-.+. .--|.++.||++||+-=+-.|..
T Consensus 249 ~~~------------------------------~~~al~~~TGs~----~~n~~lR~~A~~~g~~l~~~gl~ 286 (575)
T 3b0x_A 249 PES------------------------------YGAGLQYLTGSA----AHSIRLRALAQEKGLKLSEYGVF 286 (575)
T ss_dssp GGG------------------------------HHHHHHHHHCCH----HHHHHHHHHHHHTTCEEETTEEE
T ss_pred HHH------------------------------HHHHHHHhhCCH----HHHHHHHHHHHHcCCCcchhhcc
Confidence 310 011222233332 23478889999999877777754
No 26
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=85.98 E-value=4.1 Score=42.89 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=39.5
Q ss_pred CCeEEEEecccccCCCCCCCceeEEeecCCCccch-HHHHHHHHHHHhcCCCcc
Q 008301 137 THATILTYGSYGLGVHGSESDIDALCLGPEFATMA-EDFFVVLHNMLKSRPEVS 189 (570)
Q Consensus 137 ~~~~I~~FGSy~lGv~~p~SDID~l~v~p~~~~~~-~~ff~~l~~~L~~~~~v~ 189 (570)
...++..-||||=|--+- +|||+++..|...... ..++..+.+.|.+.+.++
T Consensus 195 ~~~~v~i~GSyRRgket~-gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~ 247 (381)
T 1jms_A 195 PDALVTMTGGFRRGKMTG-HDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLL 247 (381)
T ss_dssp TTCEEEECHHHHTTCSCB-SSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEccccccCCCCc-CCeEEEEeCCCccccchhhHHHHHHHHHHhCCCcc
Confidence 467999999999998875 5999999988754211 126777888888877763
No 27
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=76.68 E-value=4.4 Score=43.33 Aligned_cols=48 Identities=31% Similarity=0.348 Sum_probs=36.7
Q ss_pred CCeEEEEecccccCCCCCCCceeEEeecCCC-cc-------chHHHHHHHHHHHhc
Q 008301 137 THATILTYGSYGLGVHGSESDIDALCLGPEF-AT-------MAEDFFVVLHNMLKS 184 (570)
Q Consensus 137 ~~~~I~~FGSy~lGv~~p~SDID~l~v~p~~-~~-------~~~~ff~~l~~~L~~ 184 (570)
.+.-|..+||++=|=-.++||||++++.+.. .+ ....||..+.+.+.+
T Consensus 153 ~~~aviamGk~Gr~EL~~~SDiDli~l~~~~~~~~~~~~~~~~~~~f~rla~~l~~ 208 (440)
T 1v4a_A 153 QPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIK 208 (440)
T ss_dssp CCCEEEECHHHHTTCCCSSCCEEEEEEECC--------CCSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccccccCcCCCCCcceEEEeCCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 4679999999999999999999999996633 11 134788888776655
No 28
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=66.77 E-value=13 Score=40.35 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=37.4
Q ss_pred CCeEEEEecccccCCCCCCCceeEEeecCCCcc---------chHHHHHHHHHHHhc
Q 008301 137 THATILTYGSYGLGVHGSESDIDALCLGPEFAT---------MAEDFFVVLHNMLKS 184 (570)
Q Consensus 137 ~~~~I~~FGSy~lGv~~p~SDID~l~v~p~~~~---------~~~~ff~~l~~~L~~ 184 (570)
.+.-|..+|+++=+=-..+||||++++.+.... ....||..+.+.+.+
T Consensus 233 ~~~aviamGklGg~EL~~~SDiDlifv~~~~~~~~t~g~~~~~~~~~f~rlaq~li~ 289 (498)
T 3k7d_A 233 RGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMH 289 (498)
T ss_dssp CSEEEEEEHHHHTTCCCTTCCEEEEEEECCCTTCBBSSSSCCBHHHHHHHHHHHHHH
T ss_pred CCEEEEeeccccccccCcccccceeeeecCcccccccccccchHHHHHHHHHHHHHH
Confidence 568999999999999999999999999764311 125788877776654
No 29
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=57.21 E-value=25 Score=32.67 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=43.6
Q ss_pred CCeEEEEeccccc---CCCCCCCceeEEeecCCCccchHHHHHHHHHHHhcCCCcceEEEeccCcc--ceEEEEECCeee
Q 008301 137 THATILTYGSYGL---GVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKV--PLMRFKFDGILI 211 (570)
Q Consensus 137 ~~~~I~~FGSy~l---Gv~~p~SDID~l~v~p~~~~~~~~ff~~l~~~L~~~~~v~~l~~I~~A~V--PIIKf~~~GI~v 211 (570)
.+..-...|||++ |+-.+.-|||+++- + ++. ..+.+.|.+. +......-++... -...+...|+.|
T Consensus 32 ~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~-~------~da-~~~~~~L~~~-g~~~~~~~~~~~~~~~f~~~~i~~v~V 102 (169)
T 2fcl_A 32 EXVNWVVTGSLSFALQGVPVEVHDIDIQTD-E------EGA-YEIERIFSEF-VSXXVRFSSTEXICSHFGELIIDGIXV 102 (169)
T ss_dssp SSCCEEEEHHHHHHHTTCCCCCCSEEEEEC-H------HHH-HHHHHHTGGG-EEEEEEEEECSSEEEEEEEEEETTEEE
T ss_pred cCCCEEEeHHHHHHHcCCCCCCCccEEEec-c------cCH-HHHHHHHHHH-hhcccCCCccccccceeeEEeeCCEEE
Confidence 4677888999977 66668899999881 1 222 4566677653 2222222222221 134556689999
Q ss_pred ccccc
Q 008301 212 DLPYA 216 (570)
Q Consensus 212 DLsf~ 216 (570)
||...
T Consensus 103 Dlm~~ 107 (169)
T 2fcl_A 103 EIMGD 107 (169)
T ss_dssp EEEEE
T ss_pred Eeeec
Confidence 99854
No 30
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=44.32 E-value=23 Score=35.67 Aligned_cols=76 Identities=17% Similarity=0.055 Sum_probs=34.9
Q ss_pred eEEEEecccccCC--CCCCCceeEEeecCCCccchHHHHHHHHHHHhcCCCcceEEEecc-------Ccc-ceEEEEE-C
Q 008301 139 ATILTYGSYGLGV--HGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKD-------AKV-PLMRFKF-D 207 (570)
Q Consensus 139 ~~I~~FGSy~lGv--~~p~SDID~l~v~p~~~~~~~~ff~~l~~~L~~~~~v~~l~~I~~-------A~V-PIIKf~~-~ 207 (570)
--|..-||...+- .-.-||+|++++.... +.|... ...|.+-..+-.++.-.+ ..- |..-+.+ +
T Consensus 24 ~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~----~~~~~~-~~wl~~fg~~l~~~~~e~~~~~~~~~~~~~~~l~lf~d 98 (294)
T 2pbe_A 24 RLVTLEGSRTNRNIPPDNFQDYDISYFVTDV----ESFKEN-DQWLEIFGKRIMMQKPEDMELFPPELGNWFSYIILFED 98 (294)
T ss_dssp EEEEEC------------CCCEEEEEEESCH----HHHHTC-SGGGGGGCCEEEEECTTSCSSSCCCSTTCEEEEEEETT
T ss_pred EEEEEecCCCCCCCCCCCcccceEEEEEcCc----hHhhhh-HHHHHHHhhHHhhccccccccCcccCCCceeEEEEecC
Confidence 3688899999855 6778999999998743 233221 112222122211221111 122 3333334 6
Q ss_pred Ceeecccccccc
Q 008301 208 GILIDLPYACLH 219 (570)
Q Consensus 208 GI~vDLsf~~l~ 219 (570)
|++|||.|..+.
T Consensus 99 g~rIDl~~~~~~ 110 (294)
T 2pbe_A 99 GNKLDLTLIPIR 110 (294)
T ss_dssp SCEEEEEEEEGG
T ss_pred CcEEEEEEecHH
Confidence 999999998864
No 31
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=38.46 E-value=48 Score=36.42 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=57.9
Q ss_pred EEEecccccCCCCCCCceeEEeecCCCccchHHHHHHHHHHHhcCCCcceEEEeccCccceEEEEECCeeeccccccccc
Q 008301 141 ILTYGSYGLGVHGSESDIDALCLGPEFATMAEDFFVVLHNMLKSRPEVSEIHCVKDAKVPLMRFKFDGILIDLPYACLHV 220 (570)
Q Consensus 141 I~~FGSy~lGv~~p~SDID~l~v~p~~~~~~~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~vDLsf~~l~~ 220 (570)
+..-||||=|--+-+ |||+++.. .. +.. |.+.+.|+ .-...+.-+ ++ .|+.|||-++...
T Consensus 182 ~~~~Gs~RR~~e~~g-DiD~li~~-~~----~~v-------l~~~~~v~---~~g~~k~~~-~~--~~~~vDl~~~~~~- 241 (578)
T 2w9m_A 182 PAPAGDVRRGLETVR-AAELTVTG-TP----DDV-------LARLPELT---VQGDGVLSG-DY--EGVPVEIACAPAE- 241 (578)
T ss_dssp CEECHHHHHTCSEES-SEEEEEES-CH----HHH-------HHHCTTCE---EC---CEEE-EE--TTEEEEEEEECTT-
T ss_pred CEEecccccCCCccC-CEEEEEec-Ch----HHH-------HhcCccce---ecCCceEEE-EE--CCEEEEEEEECHH-
Confidence 889999999987765 99999887 21 221 55556665 222333222 23 8999999988631
Q ss_pred cCCCccccCCCchhccccchhhhhccchhhhHHHHHHhcCCccchhHHH-HHHHHHHHHhCcCCCCCCcc
Q 008301 221 LSVPENVDVLNPFFLRDLDETSWKSLSGVRANKCILQLVPDLEKFQPVL-RCIKLWAKRRGVYGNLHGFL 289 (570)
Q Consensus 221 ~~ip~~l~~~~~~lL~~ld~~s~rSLnG~Rv~~~Il~lvp~~~~Fr~ll-r~IK~WAk~RgIys~~~G~L 289 (570)
. ..-.++-+-. .-. |.++.||++||+-=+-.|-.
T Consensus 242 -----~------------------------~~~al~~~TG------~~n~~~lr~~A~~~g~~l~~~gl~ 276 (578)
T 2w9m_A 242 -----A------------------------RGALDLLRSG------EHFAGQVQAAAQARGFTLTAGGLS 276 (578)
T ss_dssp -----T------------------------HHHHHHHTSC------HHHHHHHHHHHHTTTCEEETTEEE
T ss_pred -----H------------------------HHHHHHHHhh------hhHHHHHHHHHHHcCCCcChhhcc
Confidence 0 0112222322 233 77889999999877777754
Done!