BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008304
(570 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4L818|PDP_STAHJ Pyrimidine-nucleoside phosphorylase OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=pdp PE=3 SV=1
Length = 433
Score = 40.0 bits (92), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 369 FEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPT 428
F+ E + ++ + +NS DV+ S ++K +TG TTT + +G P
Sbjct: 47 FQDMNDEERAALTMAMVNSGDVIDLSKINGIKVDKHSTGGVGDTTTLVLAPLVAAVGVPV 106
Query: 429 VSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAAL 465
S RG + G +E+ GF+ EDF L
Sbjct: 107 AKMSGRG-LGHTGGTIDKLESIKGFHVEISEEDFIKL 142
>sp|Q6UVJ0|SAS6_HUMAN Spindle assembly abnormal protein 6 homolog OS=Homo sapiens
GN=SASS6 PE=1 SV=1
Length = 657
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 489 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 548
LSE L A N LT+ + S + +LK+++ ++EE++ E+ S R E + + +EC+
Sbjct: 254 LSE-LEAANKDLTERKYKGDSTIRELKAKLSGVEEELQRTKQEVLSLRRENSTLDVECHE 312
Query: 549 ADERAKILASEVIGLEEKVR 568
++ L ++V LE++++
Sbjct: 313 KEKHVNQLQTKVAVLEQEIK 332
>sp|Q3KR99|SPDLY_RAT Protein Spindly OS=Rattus norvegicus GN=Spdl1 PE=2 SV=1
Length = 597
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 470 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529
E+ QEK+ALQR +E + ESL+ E +L QQ++ + QL+ ++ + +
Sbjct: 52 ENYNQEKYALQREVELKSRMLESLSCECEALR---QQQKAQLEQLEMQLHRSHRQ----- 103
Query: 530 VELESFRNEYANVRLECNAA 549
E+ RN+ N+++E + A
Sbjct: 104 -EVHGLRNKLENLKVELDEA 122
>sp|Q80UK7|SAS6_MOUSE Spindle assembly abnormal protein 6 homolog OS=Mus musculus
GN=Sass6 PE=2 SV=2
Length = 654
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 48/89 (53%)
Query: 480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539
QR++ ++ L A N LT+ + S V +LK+++ ++EE++ E+ S R E
Sbjct: 244 QRNIHQLQSRLSELEAANKELTERKYKGDSTVRELKAKLAGVEEELQRAKQEVLSLRREN 303
Query: 540 ANVRLECNAADERAKILASEVIGLEEKVR 568
+ EC+ ++ L ++V LE++++
Sbjct: 304 CTLDTECHEKEKHINQLQTKVAVLEQEIK 332
>sp|Q92351|PCP1_SCHPO Spindle pole body protein pcp1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pcp1 PE=1 SV=1
Length = 1208
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 19/121 (15%)
Query: 445 SSIENQHGF-YSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS 503
SS + ++G+ Y ++H LE+ IEDL K ALQ L+ L + ++ S
Sbjct: 905 SSPDRKNGYLYPSEHTSKIEYLEKTIEDL---KLALQDELKNRNLLMDDIS--------S 953
Query: 504 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR----NEYANVRLECNAADERAKILASE 559
YN+Q + +L+ +++ L+ E + + ELES+R N N+ + N +ER K + E
Sbjct: 954 YNKQTT---KLQEKIKWLERERSILIDELESYRSNQFNYQNNLVQDKNELEERLKEIQKE 1010
Query: 560 V 560
+
Sbjct: 1011 L 1011
>sp|Q6P132|TXB1B_DANRE Tax1-binding protein 1 homolog B OS=Danio rerio GN=tax1bp1b PE=2
SV=3
Length = 823
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524
LEQ +E + QEK L +L+ + + L E + L Y Q+R QL+ ++++LQ
Sbjct: 156 LEQKMEQIQQEKKELLENLDLLQKERDELIDEKNRLEKEYEQERESSAQLRKDVQELQ-- 213
Query: 525 IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK 566
+ +S + E V+ + R L ++IG+ +K
Sbjct: 214 -----LSAQSLQEEREEVKRRMEESTARLLQLEEDLIGVTQK 250
>sp|A7THU9|SP110_VANPO Spindle pole body component 110 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=SPC110 PE=3 SV=1
Length = 929
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 84/192 (43%), Gaps = 37/192 (19%)
Query: 351 RASFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSM---------DVLGSSPAQNPSM 401
R S D++N + F+ T PE D + SS L S+ ++ +S A NP
Sbjct: 59 RTSIDDAMNSRMFNDSMQFDDTLPELDVNLQSSKLTSINMNKKNLIKELKENSNASNPL- 117
Query: 402 EKETTGAFSKTTTSN------IPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYS 455
KE SK TT N S L N T D+G++R+ IE YS
Sbjct: 118 -KEQQEQLSKLTTENYNLKLKCNSLLKVLNNVT----DQGELRKSLEFLDEIEEWKSKYS 172
Query: 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVV--NQ 513
T N +F L+ +DL KF R+LE+ ES +++ R ++ +
Sbjct: 173 T-ANSEFNLLKIKYDDLVI-KF---RNLESKVDEQESEVEDHT---------RCIIERDN 218
Query: 514 LKSEMEKLQEEI 525
L+++++KL EE+
Sbjct: 219 LQNKIDKLSEEL 230
>sp|P35458|DCTN1_CHICK Dynactin subunit 1 OS=Gallus gallus GN=DCTN1 PE=2 SV=2
Length = 1224
Score = 33.5 bits (75), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEK 520
D AA ++ L ++ L+ +L R LS S E+ L ++ + + L+ + EK
Sbjct: 345 DGAASSYQVKQLEEQNARLKEALVRMRDLSASEKQEHVKLQKQMEKKNTELESLRQQREK 404
Query: 521 LQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRSL 570
LQEE+K ++ + E + L A+E + L + LEEKVR L
Sbjct: 405 LQEEVKQAEKTVDELK-EQVDAAL---GAEEMVETLTERNLDLEEKVREL 450
>sp|A2AM05|CNTLN_MOUSE Centlein OS=Mus musculus GN=Cntln PE=1 SV=1
Length = 1397
Score = 33.5 bits (75), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 506 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 565
Q R V+ L+ E E+L+ L +LE RN+ A+ R E ++ D R K+L +I ++
Sbjct: 235 QNRLVIKNLEEENERLRTRCTDLLNDLEKLRNQEAHWRKEKHSVDTRVKVLEENLIEAKK 294
Query: 566 KVRS 569
++ S
Sbjct: 295 EIES 298
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.121 0.321
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,762,255
Number of Sequences: 539616
Number of extensions: 8213809
Number of successful extensions: 32276
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 873
Number of HSP's that attempted gapping in prelim test: 28329
Number of HSP's gapped (non-prelim): 3674
length of query: 570
length of database: 191,569,459
effective HSP length: 123
effective length of query: 447
effective length of database: 125,196,691
effective search space: 55962920877
effective search space used: 55962920877
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 64 (29.3 bits)