Query 008304
Match_columns 570
No_of_seqs 22 out of 24
Neff 2.4
Searched_HMMs 46136
Date Thu Mar 28 22:07:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08317 Spc7: Spc7 kinetochor 96.7 0.041 8.8E-07 55.7 14.4 106 463-568 152-261 (325)
2 smart00787 Spc7 Spc7 kinetocho 95.5 0.34 7.4E-06 49.8 14.1 104 464-567 148-255 (312)
3 PF08614 ATG16: Autophagy prot 95.5 0.11 2.3E-06 49.2 9.6 110 460-569 74-183 (194)
4 PF08317 Spc7: Spc7 kinetochor 95.4 0.28 6E-06 49.9 12.7 106 464-569 174-287 (325)
5 PF10186 Atg14: UV radiation r 95.2 0.82 1.8E-05 43.7 14.7 80 461-540 21-108 (302)
6 TIGR02168 SMC_prok_B chromosom 95.2 0.52 1.1E-05 52.3 15.1 40 460-499 677-716 (1179)
7 TIGR02168 SMC_prok_B chromosom 95.2 0.48 1E-05 52.5 14.7 67 461-527 671-737 (1179)
8 TIGR02169 SMC_prok_A chromosom 95.1 0.56 1.2E-05 52.4 15.1 48 514-561 432-479 (1164)
9 PF07888 CALCOCO1: Calcium bin 94.2 0.82 1.8E-05 50.8 13.6 96 465-567 141-236 (546)
10 PF00038 Filament: Intermediat 94.2 1.3 2.9E-05 43.5 13.8 101 463-563 28-136 (312)
11 PF11932 DUF3450: Protein of u 94.0 1.6 3.4E-05 42.7 13.6 62 463-524 38-99 (251)
12 PRK09039 hypothetical protein; 93.9 1.1 2.4E-05 46.3 13.0 58 501-558 122-179 (343)
13 PRK11637 AmiB activator; Provi 93.8 1.7 3.8E-05 45.3 14.4 85 456-540 166-250 (428)
14 PRK02224 chromosome segregatio 93.7 1.5 3.2E-05 49.0 14.6 107 461-568 483-589 (880)
15 PRK11637 AmiB activator; Provi 93.7 1 2.2E-05 47.0 12.5 82 458-539 45-126 (428)
16 PF09730 BicD: Microtubule-ass 93.4 4.5 9.8E-05 46.4 17.9 67 450-516 255-321 (717)
17 PRK10884 SH3 domain-containing 93.3 0.99 2.1E-05 44.2 11.0 79 455-543 88-166 (206)
18 PF14197 Cep57_CLD_2: Centroso 92.9 0.66 1.4E-05 38.8 7.9 61 507-567 3-63 (69)
19 PF09304 Cortex-I_coil: Cortex 92.9 3.6 7.7E-05 37.7 13.1 89 457-548 13-102 (107)
20 COG1196 Smc Chromosome segrega 92.3 2.8 6E-05 49.4 14.6 106 461-566 384-489 (1163)
21 PHA02562 46 endonuclease subun 92.1 3.2 7E-05 43.7 13.5 53 459-511 298-353 (562)
22 TIGR01843 type_I_hlyD type I s 92.0 6.5 0.00014 39.3 14.9 21 467-487 144-164 (423)
23 PF08647 BRE1: BRE1 E3 ubiquit 91.8 2 4.3E-05 37.2 9.8 74 456-533 20-93 (96)
24 PF04111 APG6: Autophagy prote 91.8 1.8 3.9E-05 44.5 11.1 28 460-487 43-70 (314)
25 PF12325 TMF_TATA_bd: TATA ele 91.4 0.86 1.9E-05 41.6 7.5 62 507-568 14-78 (120)
26 PF04849 HAP1_N: HAP1 N-termin 90.8 8.3 0.00018 40.5 14.8 113 455-567 155-285 (306)
27 COG1579 Zn-ribbon protein, pos 90.8 5.5 0.00012 40.4 13.1 99 470-568 13-120 (239)
28 PRK09039 hypothetical protein; 90.8 5 0.00011 41.7 13.2 61 492-552 120-180 (343)
29 PHA02562 46 endonuclease subun 90.8 4 8.8E-05 42.9 12.8 105 459-563 173-281 (562)
30 PF00769 ERM: Ezrin/radixin/mo 90.6 6.7 0.00015 39.1 13.4 56 511-566 56-111 (246)
31 PF04156 IncA: IncA protein; 90.5 14 0.00031 34.1 15.3 70 460-529 81-150 (191)
32 PF04111 APG6: Autophagy prote 90.5 3.2 7E-05 42.6 11.4 76 461-536 58-133 (314)
33 PF10186 Atg14: UV radiation r 90.2 14 0.00031 35.4 14.9 73 461-533 35-108 (302)
34 COG1196 Smc Chromosome segrega 90.1 6.5 0.00014 46.4 14.8 28 537-564 877-904 (1163)
35 PF09789 DUF2353: Uncharacteri 90.0 4 8.7E-05 42.9 11.8 87 461-547 66-171 (319)
36 PF14197 Cep57_CLD_2: Centroso 89.9 4.7 0.0001 33.8 9.9 65 465-529 3-67 (69)
37 PF13815 Dzip-like_N: Iguana/D 89.5 2.9 6.3E-05 37.1 9.0 81 458-538 25-116 (118)
38 TIGR01843 type_I_hlyD type I s 89.3 16 0.00035 36.5 15.0 27 461-487 145-171 (423)
39 PRK02224 chromosome segregatio 89.3 10 0.00022 42.6 15.0 104 462-566 470-573 (880)
40 PF05701 WEMBL: Weak chloropla 89.1 8 0.00017 42.2 13.6 67 503-569 282-348 (522)
41 PRK10884 SH3 domain-containing 89.1 3.7 8.1E-05 40.3 10.2 69 459-527 99-171 (206)
42 PF11932 DUF3450: Protein of u 89.1 5.6 0.00012 38.9 11.4 65 479-543 33-97 (251)
43 KOG2264 Exostosin EXT1L [Signa 89.0 2.4 5.2E-05 48.2 9.8 79 475-553 73-151 (907)
44 PF06005 DUF904: Protein of un 88.6 4.5 9.7E-05 34.2 9.0 47 485-531 15-61 (72)
45 PF05911 DUF869: Plant protein 88.5 9.6 0.00021 44.2 14.4 106 465-570 97-202 (769)
46 PF07888 CALCOCO1: Calcium bin 88.5 14 0.00029 41.6 15.0 61 465-525 162-236 (546)
47 PF02050 FliJ: Flagellar FliJ 88.4 12 0.00027 30.4 13.8 89 461-549 13-106 (123)
48 PRK04863 mukB cell division pr 88.2 11 0.00024 46.4 15.3 73 492-564 352-424 (1486)
49 TIGR00606 rad50 rad50. This fa 88.1 7.7 0.00017 46.3 13.8 60 508-569 1027-1086(1311)
50 KOG4005 Transcription factor X 88.0 5.1 0.00011 41.4 10.6 95 456-557 86-195 (292)
51 KOG0161 Myosin class II heavy 87.6 10 0.00022 47.8 14.8 84 484-567 890-980 (1930)
52 PF08614 ATG16: Autophagy prot 87.5 5.3 0.00011 37.9 9.9 89 465-553 93-181 (194)
53 KOG0250 DNA repair protein RAD 87.3 13 0.00028 44.7 14.6 70 499-568 278-361 (1074)
54 PF02050 FliJ: Flagellar FliJ 87.3 15 0.00032 30.0 12.3 75 482-556 13-92 (123)
55 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.2 22 0.00048 32.1 14.9 19 550-568 97-115 (132)
56 PRK09973 putative outer membra 86.9 1.9 4.1E-05 37.9 6.0 44 510-553 25-68 (85)
57 PF04728 LPP: Lipoprotein leuc 86.9 2.9 6.2E-05 34.5 6.6 45 503-554 4-48 (56)
58 PF12325 TMF_TATA_bd: TATA ele 86.6 21 0.00045 32.8 12.7 97 460-567 16-112 (120)
59 TIGR00606 rad50 rad50. This fa 86.4 12 0.00025 44.9 13.9 41 496-536 889-929 (1311)
60 smart00787 Spc7 Spc7 kinetocho 86.4 12 0.00026 38.9 12.4 101 468-568 173-281 (312)
61 cd07666 BAR_SNX7 The Bin/Amphi 86.3 27 0.00059 35.4 14.5 113 456-569 50-195 (243)
62 KOG0933 Structural maintenance 86.1 15 0.00033 44.1 14.2 108 461-568 788-898 (1174)
63 TIGR03007 pepcterm_ChnLen poly 85.7 16 0.00034 38.5 13.1 29 500-528 266-294 (498)
64 PF04012 PspA_IM30: PspA/IM30 85.5 34 0.00074 32.6 14.3 33 463-495 26-58 (221)
65 PF12777 MT: Microtubule-bindi 85.5 8.7 0.00019 39.5 10.9 100 463-562 217-316 (344)
66 PRK15396 murein lipoprotein; P 84.8 3 6.5E-05 36.0 6.1 46 510-555 26-71 (78)
67 PF06005 DUF904: Protein of un 84.8 10 0.00022 32.1 9.1 59 498-556 7-65 (72)
68 PF12718 Tropomyosin_1: Tropom 84.5 35 0.00075 31.8 13.6 104 461-568 29-132 (143)
69 PF07200 Mod_r: Modifier of ru 84.5 14 0.00031 33.3 10.6 82 479-560 32-119 (150)
70 COG3074 Uncharacterized protei 84.2 6.8 0.00015 34.2 7.9 45 460-504 18-62 (79)
71 PF05700 BCAS2: Breast carcino 84.1 21 0.00045 34.9 12.3 55 494-548 119-175 (221)
72 PRK10698 phage shock protein P 84.0 44 0.00095 33.0 14.5 24 462-485 26-49 (222)
73 PF12128 DUF3584: Protein of u 83.6 16 0.00034 43.6 13.3 38 513-550 639-676 (1201)
74 PF05615 THOC7: Tho complex su 83.4 29 0.00064 31.2 12.1 84 464-548 43-126 (139)
75 KOG0980 Actin-binding protein 83.4 15 0.00032 43.6 12.5 106 461-566 425-552 (980)
76 PRK15422 septal ring assembly 83.2 8.5 0.00018 33.8 8.2 60 460-519 18-77 (79)
77 PF10046 BLOC1_2: Biogenesis o 83.1 26 0.00057 30.5 11.3 83 480-569 13-98 (99)
78 cd07653 F-BAR_CIP4-like The F- 82.6 23 0.0005 34.1 11.8 89 462-550 107-195 (251)
79 COG1579 Zn-ribbon protein, pos 82.6 55 0.0012 33.4 14.9 83 458-540 43-127 (239)
80 KOG0933 Structural maintenance 82.5 25 0.00055 42.4 14.0 78 469-549 750-827 (1174)
81 PF15070 GOLGA2L5: Putative go 82.2 27 0.00059 39.5 13.8 18 512-529 90-107 (617)
82 cd07647 F-BAR_PSTPIP The F-BAR 82.2 14 0.0003 36.1 10.3 86 464-551 103-188 (239)
83 TIGR02894 DNA_bind_RsfA transc 82.2 9.8 0.00021 36.9 9.0 71 477-558 86-156 (161)
84 TIGR02680 conserved hypothetic 82.0 29 0.00064 42.2 14.8 13 317-329 725-737 (1353)
85 PF10473 CENP-F_leu_zip: Leuci 82.0 37 0.0008 32.1 12.5 84 463-546 27-113 (140)
86 PF04849 HAP1_N: HAP1 N-termin 81.9 8.5 0.00018 40.4 9.2 60 463-522 244-303 (306)
87 PF00769 ERM: Ezrin/radixin/mo 81.7 26 0.00057 35.0 12.2 86 468-553 41-126 (246)
88 PF12128 DUF3584: Protein of u 81.4 16 0.00035 43.5 12.3 67 498-564 631-698 (1201)
89 PRK05689 fliJ flagellar biosyn 81.4 40 0.00087 30.2 13.8 93 464-556 6-111 (147)
90 PF11559 ADIP: Afadin- and alp 81.3 42 0.00092 30.4 12.8 15 459-473 30-44 (151)
91 PF00038 Filament: Intermediat 81.2 34 0.00073 33.8 12.7 37 459-495 53-89 (312)
92 KOG0980 Actin-binding protein 81.2 17 0.00037 43.1 12.0 63 464-526 334-396 (980)
93 PF04728 LPP: Lipoprotein leuc 81.1 7.9 0.00017 31.9 6.9 48 488-547 3-50 (56)
94 PF07200 Mod_r: Modifier of ru 81.1 25 0.00054 31.7 10.8 85 483-568 29-113 (150)
95 PRK03918 chromosome segregatio 80.8 46 0.001 37.3 15.0 20 548-567 256-275 (880)
96 KOG0161 Myosin class II heavy 80.7 26 0.00057 44.5 14.0 107 462-568 1810-1916(1930)
97 PF05529 Bap31: B-cell recepto 80.7 12 0.00027 35.1 9.1 31 511-541 156-186 (192)
98 KOG0976 Rho/Rac1-interacting s 80.6 24 0.00053 41.9 12.9 103 465-567 321-440 (1265)
99 PF07106 TBPIP: Tat binding pr 80.3 22 0.00048 32.9 10.4 68 458-537 70-137 (169)
100 PRK00409 recombination and DNA 80.2 14 0.00031 42.4 11.0 62 439-504 496-557 (782)
101 PRK04863 mukB cell division pr 79.5 36 0.00079 42.2 14.6 11 537-547 421-431 (1486)
102 PF05529 Bap31: B-cell recepto 79.5 13 0.00028 35.0 8.8 39 502-540 154-192 (192)
103 TIGR01069 mutS2 MutS2 family p 79.5 16 0.00035 41.9 11.2 64 439-506 491-554 (771)
104 PF04899 MbeD_MobD: MbeD/MobD 79.3 21 0.00045 30.4 9.0 61 462-522 9-69 (70)
105 cd00179 SynN Syntaxin N-termin 79.2 45 0.00097 29.5 12.5 60 461-520 14-73 (151)
106 PF09726 Macoilin: Transmembra 79.1 20 0.00044 41.0 11.7 16 553-568 589-604 (697)
107 PF14662 CCDC155: Coiled-coil 79.1 58 0.0012 32.7 13.3 41 464-504 12-52 (193)
108 PF10473 CENP-F_leu_zip: Leuci 79.0 59 0.0013 30.8 14.0 90 463-566 20-109 (140)
109 PF10174 Cast: RIM-binding pro 78.8 14 0.00031 42.9 10.5 49 488-536 114-162 (775)
110 cd07672 F-BAR_PSTPIP2 The F-BA 78.7 23 0.0005 35.3 10.7 84 460-550 100-188 (240)
111 COG4942 Membrane-bound metallo 78.7 53 0.0011 36.1 14.1 67 457-523 158-224 (420)
112 COG2433 Uncharacterized conser 78.5 41 0.00089 38.7 13.6 88 477-564 418-508 (652)
113 TIGR02680 conserved hypothetic 78.3 53 0.0011 40.1 15.3 30 451-480 211-240 (1353)
114 COG4942 Membrane-bound metallo 78.3 17 0.00036 39.8 10.2 80 457-536 140-230 (420)
115 TIGR02231 conserved hypothetic 77.9 31 0.00068 37.1 12.1 43 452-494 63-108 (525)
116 KOG0995 Centromere-associated 77.9 37 0.00079 38.7 12.9 95 473-567 264-369 (581)
117 PF10481 CENP-F_N: Cenp-F N-te 77.8 20 0.00043 37.8 10.2 84 460-550 18-136 (307)
118 PF05266 DUF724: Protein of un 77.2 72 0.0016 31.2 13.3 87 460-550 86-172 (190)
119 TIGR01000 bacteriocin_acc bact 76.5 68 0.0015 34.0 13.9 15 512-526 239-253 (457)
120 PF05546 She9_MDM33: She9 / Md 76.2 22 0.00048 35.8 9.7 59 488-546 9-69 (207)
121 PRK09793 methyl-accepting prot 75.9 1.1E+02 0.0025 32.8 15.5 109 459-567 242-354 (533)
122 PF05622 HOOK: HOOK protein; 74.7 0.97 2.1E-05 50.3 0.0 83 464-546 197-283 (713)
123 KOG0977 Nuclear envelope prote 74.7 55 0.0012 37.0 13.2 52 510-561 163-214 (546)
124 KOG0243 Kinesin-like protein [ 74.6 23 0.0005 42.6 10.8 69 481-549 441-516 (1041)
125 cd07651 F-BAR_PombeCdc15_like 74.2 75 0.0016 30.8 12.6 75 478-552 104-186 (236)
126 KOG0994 Extracellular matrix g 73.7 46 0.00099 41.1 12.8 57 495-551 1605-1661(1758)
127 PF10267 Tmemb_cc2: Predicted 73.6 1.4E+02 0.0031 32.5 17.6 32 457-488 209-240 (395)
128 PF03962 Mnd1: Mnd1 family; I 73.5 64 0.0014 31.2 11.8 83 457-547 66-152 (188)
129 PRK12704 phosphodiesterase; Pr 73.3 61 0.0013 35.9 13.0 42 511-552 105-146 (520)
130 PF05701 WEMBL: Weak chloropla 73.2 92 0.002 34.3 14.3 94 467-560 295-402 (522)
131 PF09602 PhaP_Bmeg: Polyhydrox 72.6 53 0.0012 32.2 11.0 53 460-514 22-75 (165)
132 PRK04778 septation ring format 72.5 60 0.0013 35.8 12.7 88 479-566 315-405 (569)
133 PF14662 CCDC155: Coiled-coil 72.2 49 0.0011 33.2 10.8 14 556-569 177-190 (193)
134 TIGR02473 flagell_FliJ flagell 72.0 67 0.0014 28.0 13.5 45 512-556 64-108 (141)
135 PF04380 BMFP: Membrane fusoge 71.7 26 0.00057 29.7 7.8 66 501-566 12-79 (79)
136 COG1842 PspA Phage shock prote 71.6 1E+02 0.0022 31.0 13.1 28 460-487 24-51 (225)
137 COG3074 Uncharacterized protei 71.5 49 0.0011 29.1 9.4 33 489-521 19-51 (79)
138 cd07655 F-BAR_PACSIN The F-BAR 71.4 33 0.00072 34.1 9.7 88 463-550 115-202 (258)
139 PF08172 CASP_C: CASP C termin 71.0 47 0.001 33.7 10.7 43 514-556 91-133 (248)
140 KOG1962 B-cell receptor-associ 71.0 50 0.0011 33.4 10.8 60 493-552 149-208 (216)
141 PF14362 DUF4407: Domain of un 70.6 37 0.0008 33.9 9.8 74 459-533 134-213 (301)
142 PF10146 zf-C4H2: Zinc finger- 70.6 92 0.002 31.5 12.5 78 462-546 27-104 (230)
143 TIGR01010 BexC_CtrB_KpsE polys 70.4 50 0.0011 33.7 10.9 31 529-559 277-307 (362)
144 PF09731 Mitofilin: Mitochondr 70.2 1.7E+02 0.0037 31.9 15.4 30 459-488 257-287 (582)
145 TIGR03545 conserved hypothetic 70.1 27 0.00059 39.0 9.6 79 458-543 189-268 (555)
146 PF05667 DUF812: Protein of un 70.0 76 0.0017 36.0 13.1 11 537-547 426-436 (594)
147 COG4238 Murein lipoprotein [Ce 69.8 19 0.00042 31.6 6.7 49 501-556 24-72 (78)
148 TIGR03017 EpsF chain length de 69.6 88 0.0019 32.4 12.6 58 496-557 312-369 (444)
149 PF05929 Phage_GPO: Phage caps 69.5 20 0.00044 37.1 8.0 62 459-520 191-253 (276)
150 TIGR03185 DNA_S_dndD DNA sulfu 69.5 1.2E+02 0.0025 33.9 14.3 68 459-526 390-459 (650)
151 PRK11281 hypothetical protein; 69.4 21 0.00045 43.1 9.0 12 462-473 62-73 (1113)
152 TIGR03185 DNA_S_dndD DNA sulfu 69.4 51 0.0011 36.7 11.5 51 460-510 209-259 (650)
153 COG3883 Uncharacterized protei 69.3 46 0.001 34.6 10.4 79 462-544 33-111 (265)
154 PF11577 NEMO: NF-kappa-B esse 69.0 55 0.0012 27.8 9.0 60 479-538 8-67 (68)
155 PF09789 DUF2353: Uncharacteri 69.0 44 0.00096 35.4 10.4 88 475-564 66-153 (319)
156 PRK07720 fliJ flagellar biosyn 68.4 91 0.002 28.1 13.8 93 464-556 6-111 (146)
157 PF06785 UPF0242: Uncharacteri 68.2 34 0.00073 37.1 9.4 93 462-559 150-249 (401)
158 PF02403 Seryl_tRNA_N: Seryl-t 67.7 30 0.00064 29.7 7.4 30 467-496 29-58 (108)
159 PF03962 Mnd1: Mnd1 family; I 67.6 64 0.0014 31.3 10.4 79 450-536 52-130 (188)
160 TIGR01000 bacteriocin_acc bact 67.6 1.5E+02 0.0032 31.6 14.0 15 459-473 96-110 (457)
161 PF10168 Nup88: Nuclear pore c 67.5 40 0.00087 38.8 10.5 61 456-522 532-592 (717)
162 PF15619 Lebercilin: Ciliary p 67.5 88 0.0019 30.7 11.4 68 460-527 19-86 (194)
163 PF12329 TMF_DNA_bd: TATA elem 67.5 73 0.0016 26.9 9.5 68 479-546 3-70 (74)
164 PF06785 UPF0242: Uncharacteri 67.2 84 0.0018 34.3 12.0 86 464-556 72-167 (401)
165 PRK00888 ftsB cell division pr 67.2 18 0.00039 32.2 6.2 44 511-554 29-72 (105)
166 PF08657 DASH_Spc34: DASH comp 67.2 29 0.00063 35.5 8.4 74 497-570 175-258 (259)
167 TIGR01005 eps_transp_fam exopo 66.9 1.1E+02 0.0023 34.5 13.3 47 500-546 307-354 (754)
168 PF15070 GOLGA2L5: Putative go 66.8 69 0.0015 36.5 11.9 42 476-517 232-273 (617)
169 PF10146 zf-C4H2: Zinc finger- 66.6 1.5E+02 0.0033 30.0 14.4 74 463-536 4-80 (230)
170 COG3096 MukB Uncharacterized p 66.5 63 0.0014 38.6 11.7 47 483-529 364-410 (1480)
171 COG4372 Uncharacterized protei 66.2 1.8E+02 0.0039 32.5 14.4 48 460-507 116-163 (499)
172 KOG1962 B-cell receptor-associ 66.0 61 0.0013 32.9 10.2 70 478-548 118-190 (216)
173 PF06156 DUF972: Protein of un 65.9 35 0.00075 30.8 7.8 47 460-506 8-54 (107)
174 PRK15422 septal ring assembly 65.6 75 0.0016 28.1 9.4 35 491-525 28-62 (79)
175 PRK09841 cryptic autophosphory 65.6 33 0.00072 38.7 9.3 40 500-539 258-297 (726)
176 smart00503 SynN Syntaxin N-ter 65.4 82 0.0018 26.5 11.2 26 527-552 86-111 (117)
177 PF13870 DUF4201: Domain of un 65.4 60 0.0013 30.3 9.5 35 496-530 139-173 (177)
178 KOG1103 Predicted coiled-coil 65.3 1.9E+02 0.0042 32.0 14.4 68 477-544 106-174 (561)
179 PF10211 Ax_dynein_light: Axon 65.3 63 0.0014 31.3 9.9 66 478-544 111-177 (189)
180 PRK10698 phage shock protein P 65.3 1.5E+02 0.0032 29.4 15.3 77 460-536 38-140 (222)
181 PF01920 Prefoldin_2: Prefoldi 65.1 74 0.0016 26.4 9.1 85 459-544 4-97 (106)
182 KOG4673 Transcription factor T 65.0 89 0.0019 36.9 12.4 94 467-560 523-635 (961)
183 KOG0971 Microtubule-associated 65.0 61 0.0013 39.2 11.3 98 469-570 370-467 (1243)
184 TIGR02231 conserved hypothetic 64.9 70 0.0015 34.6 11.2 35 459-493 77-111 (525)
185 PRK14140 heat shock protein Gr 64.9 32 0.0007 33.9 8.0 27 533-559 61-87 (191)
186 PF06013 WXG100: Proteins of 1 64.9 61 0.0013 24.8 9.4 62 461-522 5-71 (86)
187 KOG4674 Uncharacterized conser 64.5 1.3E+02 0.0029 38.5 14.6 108 460-567 1174-1323(1822)
188 PF07106 TBPIP: Tat binding pr 64.5 29 0.00063 32.1 7.3 14 463-476 33-46 (169)
189 PRK14148 heat shock protein Gr 64.4 45 0.00098 32.9 8.9 26 534-559 65-90 (195)
190 PF12072 DUF3552: Domain of un 64.2 1.4E+02 0.0031 28.8 13.1 47 506-552 96-142 (201)
191 KOG0979 Structural maintenance 64.0 70 0.0015 38.8 11.7 116 449-567 142-278 (1072)
192 KOG0288 WD40 repeat protein Ti 63.8 1.4E+02 0.0031 33.2 13.2 100 463-562 9-116 (459)
193 PF08826 DMPK_coil: DMPK coile 63.3 23 0.0005 29.5 5.7 49 520-568 5-56 (61)
194 cd07653 F-BAR_CIP4-like The F- 63.3 1.1E+02 0.0023 29.6 11.1 39 509-547 105-143 (251)
195 PRK10929 putative mechanosensi 63.2 1.1E+02 0.0024 37.3 13.3 27 459-485 64-90 (1109)
196 PF09311 Rab5-bind: Rabaptin-l 63.1 3.8 8.3E-05 38.8 1.3 86 463-555 11-96 (181)
197 KOG0612 Rho-associated, coiled 63.0 93 0.002 38.5 12.5 91 458-551 463-560 (1317)
198 PRK15048 methyl-accepting chem 62.8 2.2E+02 0.0048 30.5 16.2 110 458-567 243-356 (553)
199 PF00261 Tropomyosin: Tropomyo 62.7 1.6E+02 0.0035 28.9 14.6 31 479-509 97-127 (237)
200 COG4026 Uncharacterized protei 62.7 33 0.00071 35.6 7.8 27 544-570 163-189 (290)
201 PRK15396 murein lipoprotein; P 62.5 28 0.0006 30.2 6.2 43 503-545 26-70 (78)
202 PF13851 GAS: Growth-arrest sp 62.3 1.6E+02 0.0035 28.8 14.2 44 478-521 38-81 (201)
203 KOG0977 Nuclear envelope prote 62.1 1.9E+02 0.0041 33.0 14.1 40 495-534 155-194 (546)
204 PF10174 Cast: RIM-binding pro 61.8 1.2E+02 0.0027 35.6 13.0 71 461-531 330-400 (775)
205 COG2433 Uncharacterized conser 61.7 1.1E+02 0.0024 35.4 12.3 85 459-543 421-508 (652)
206 TIGR03319 YmdA_YtgF conserved 61.7 1.5E+02 0.0033 32.9 13.1 30 518-547 106-135 (514)
207 TIGR01010 BexC_CtrB_KpsE polys 61.6 66 0.0014 32.9 9.8 16 552-567 243-258 (362)
208 TIGR03017 EpsF chain length de 61.5 1.7E+02 0.0037 30.4 12.9 36 496-531 269-304 (444)
209 PF13514 AAA_27: AAA domain 61.5 95 0.0021 36.8 12.3 109 460-568 242-363 (1111)
210 PF06008 Laminin_I: Laminin Do 61.0 55 0.0012 32.3 8.9 58 465-522 22-79 (264)
211 cd07654 F-BAR_FCHSD The F-BAR 60.8 54 0.0012 33.4 8.9 66 490-555 79-156 (264)
212 PRK10929 putative mechanosensi 60.8 86 0.0019 38.1 11.9 42 490-531 260-301 (1109)
213 KOG0250 DNA repair protein RAD 60.7 1.5E+02 0.0032 36.3 13.5 75 490-564 304-378 (1074)
214 PF07989 Microtub_assoc: Micro 60.6 78 0.0017 27.0 8.5 17 464-480 4-20 (75)
215 TIGR01005 eps_transp_fam exopo 60.5 98 0.0021 34.8 11.7 55 504-558 347-404 (754)
216 TIGR01541 tape_meas_lam_C phag 60.5 1.4E+02 0.003 31.6 12.1 19 491-509 55-73 (332)
217 PF10168 Nup88: Nuclear pore c 60.3 71 0.0015 36.9 10.7 78 448-525 546-623 (717)
218 PF06632 XRCC4: DNA double-str 60.0 1.4E+02 0.003 31.9 12.1 77 460-536 137-214 (342)
219 TIGR01069 mutS2 MutS2 family p 59.6 1.6E+02 0.0035 34.2 13.4 24 51-75 120-143 (771)
220 PRK04778 septation ring format 59.6 2.1E+02 0.0045 31.7 13.8 72 493-564 360-431 (569)
221 PF15294 Leu_zip: Leucine zipp 59.6 1.9E+02 0.0041 30.5 12.6 90 463-552 128-237 (278)
222 PF15254 CCDC14: Coiled-coil d 59.5 1.8E+02 0.004 34.7 13.7 103 465-567 439-545 (861)
223 PRK14154 heat shock protein Gr 59.3 37 0.0008 34.0 7.4 36 492-527 63-98 (208)
224 COG0419 SbcC ATPase involved i 59.1 2.5E+02 0.0054 32.7 14.8 21 461-481 233-253 (908)
225 PRK10361 DNA recombination pro 58.9 1.2E+02 0.0026 33.9 11.7 35 492-527 44-78 (475)
226 PF01519 DUF16: Protein of unk 58.7 48 0.001 30.4 7.3 42 499-540 50-91 (102)
227 KOG0612 Rho-associated, coiled 58.6 46 0.001 40.9 9.2 11 92-102 102-112 (1317)
228 PF05278 PEARLI-4: Arabidopsis 58.5 1.6E+02 0.0034 30.9 11.9 51 517-567 194-244 (269)
229 PF09738 DUF2051: Double stran 58.3 1.1E+02 0.0024 32.1 10.8 109 461-569 106-237 (302)
230 PF04977 DivIC: Septum formati 58.1 42 0.0009 26.6 6.2 29 514-542 22-50 (80)
231 PF09728 Taxilin: Myosin-like 57.9 2.2E+02 0.0048 29.6 12.9 67 459-529 21-87 (309)
232 PF07926 TPR_MLP1_2: TPR/MLP1/ 57.9 1.5E+02 0.0032 26.9 15.6 98 461-558 11-119 (132)
233 KOG0804 Cytoplasmic Zn-finger 57.8 1.9E+02 0.004 32.7 12.9 60 510-569 383-446 (493)
234 PRK03947 prefoldin subunit alp 57.7 1.4E+02 0.0031 26.7 10.9 35 460-494 13-47 (140)
235 TIGR03007 pepcterm_ChnLen poly 57.7 1.8E+02 0.0039 30.8 12.5 56 501-556 323-381 (498)
236 PF05278 PEARLI-4: Arabidopsis 57.6 2.5E+02 0.0054 29.5 13.8 58 509-566 193-250 (269)
237 PF10828 DUF2570: Protein of u 57.5 1.1E+02 0.0024 27.1 9.3 27 467-493 25-51 (110)
238 PRK14143 heat shock protein Gr 57.4 47 0.001 33.7 7.8 38 491-528 77-114 (238)
239 KOG0239 Kinesin (KAR3 subfamil 57.2 1.4E+02 0.003 34.5 12.3 62 486-551 208-269 (670)
240 PF14389 Lzipper-MIP1: Leucine 57.2 20 0.00044 30.9 4.6 62 509-570 8-73 (88)
241 PRK00409 recombination and DNA 57.1 2.3E+02 0.005 33.0 14.1 22 53-75 127-148 (782)
242 PF12795 MscS_porin: Mechanose 57.0 1.4E+02 0.0029 29.3 10.7 95 459-553 37-136 (240)
243 PF13094 CENP-Q: CENP-Q, a CEN 56.5 1.1E+02 0.0023 28.3 9.4 64 468-531 21-84 (160)
244 PF09731 Mitofilin: Mitochondr 56.5 3E+02 0.0066 30.1 14.9 18 458-475 271-288 (582)
245 smart00502 BBC B-Box C-termina 56.0 1.2E+02 0.0025 25.2 13.8 74 463-536 3-81 (127)
246 PF05911 DUF869: Plant protein 55.9 2.2E+02 0.0047 33.6 13.7 74 474-547 85-158 (769)
247 TIGR01541 tape_meas_lam_C phag 55.8 1.8E+02 0.004 30.7 12.0 24 525-548 128-151 (332)
248 PF15035 Rootletin: Ciliary ro 55.5 1.5E+02 0.0031 29.0 10.5 30 482-511 89-118 (182)
249 PRK11448 hsdR type I restricti 55.4 93 0.002 37.7 11.0 19 510-528 192-210 (1123)
250 PF10212 TTKRSYEDQ: Predicted 55.2 1.1E+02 0.0025 34.5 10.9 72 462-536 443-514 (518)
251 PF08647 BRE1: BRE1 E3 ubiquit 55.0 70 0.0015 27.8 7.6 64 495-565 3-66 (96)
252 PF05557 MAD: Mitotic checkpoi 54.9 1.4E+02 0.0031 33.8 11.8 25 460-484 503-527 (722)
253 PF06156 DUF972: Protein of un 54.8 60 0.0013 29.3 7.3 51 498-548 4-54 (107)
254 KOG4196 bZIP transcription fac 54.8 26 0.00056 33.4 5.2 43 513-555 78-120 (135)
255 PRK14160 heat shock protein Gr 54.7 64 0.0014 32.4 8.2 50 511-560 63-112 (211)
256 TIGR02894 DNA_bind_RsfA transc 54.6 1.8E+02 0.004 28.5 10.9 27 474-500 104-130 (161)
257 KOG3990 Uncharacterized conser 54.5 1.9E+02 0.0042 30.7 11.7 78 450-536 212-294 (305)
258 PRK09973 putative outer membra 54.4 51 0.0011 29.3 6.6 43 503-545 25-67 (85)
259 PRK14147 heat shock protein Gr 54.4 38 0.00082 32.6 6.4 22 537-558 46-67 (172)
260 PF11887 DUF3407: Protein of u 54.2 2.5E+02 0.0054 28.4 13.6 89 459-547 55-143 (267)
261 PF00846 Hanta_nucleocap: Hant 53.9 1.4E+02 0.0029 33.2 10.9 78 463-540 2-80 (428)
262 PRK11546 zraP zinc resistance 53.6 1.8E+02 0.0038 28.0 10.5 72 451-530 38-110 (143)
263 PF03961 DUF342: Protein of un 53.5 79 0.0017 33.7 9.1 31 458-488 332-362 (451)
264 PF00170 bZIP_1: bZIP transcri 53.5 48 0.001 26.3 5.9 47 478-524 16-62 (64)
265 PF00261 Tropomyosin: Tropomyo 53.3 2.3E+02 0.0051 27.8 14.8 90 478-567 124-213 (237)
266 KOG4674 Uncharacterized conser 53.0 2.3E+02 0.0049 36.6 13.9 107 463-569 62-182 (1822)
267 KOG2685 Cystoskeletal protein 52.8 87 0.0019 34.6 9.4 48 452-500 83-130 (421)
268 PRK14158 heat shock protein Gr 52.6 63 0.0014 32.0 7.7 49 512-560 43-91 (194)
269 TIGR02449 conserved hypothetic 52.2 1.2E+02 0.0026 25.7 8.2 39 519-557 17-55 (65)
270 PRK13169 DNA replication intia 52.1 57 0.0012 29.8 6.8 50 498-547 4-53 (110)
271 PF15619 Lebercilin: Ciliary p 51.9 2.5E+02 0.0053 27.7 12.6 82 488-569 26-107 (194)
272 TIGR00996 Mtu_fam_mce virulenc 51.6 2.5E+02 0.0054 27.7 11.7 23 472-494 183-205 (291)
273 TIGR03752 conj_TIGR03752 integ 51.5 1.1E+02 0.0024 34.3 10.0 34 471-504 63-96 (472)
274 PRK00106 hypothetical protein; 51.1 2.9E+02 0.0063 31.3 13.2 14 527-540 136-149 (535)
275 KOG0804 Cytoplasmic Zn-finger 50.7 2.6E+02 0.0057 31.6 12.6 97 460-556 347-447 (493)
276 KOG0996 Structural maintenance 50.6 2.6E+02 0.0057 34.8 13.4 106 462-567 414-530 (1293)
277 cd07656 F-BAR_srGAP The F-BAR 50.6 1.2E+02 0.0026 30.4 9.4 67 490-556 79-157 (241)
278 PRK10920 putative uroporphyrin 50.4 2.8E+02 0.0062 30.1 12.7 19 537-555 153-171 (390)
279 PRK10361 DNA recombination pro 50.2 3.5E+02 0.0077 30.4 13.6 6 555-560 117-122 (475)
280 PF05791 Bacillus_HBL: Bacillu 50.1 1.3E+02 0.0029 28.7 9.3 30 513-542 146-175 (184)
281 PF14931 IFT20: Intraflagellar 50.1 2.1E+02 0.0046 26.4 11.6 76 468-543 21-107 (120)
282 PF00015 MCPsignal: Methyl-acc 49.9 2E+02 0.0043 26.1 14.2 37 500-536 133-169 (213)
283 PRK13169 DNA replication intia 49.7 75 0.0016 29.1 7.2 47 460-506 8-54 (110)
284 PF05667 DUF812: Protein of un 49.6 3.2E+02 0.0069 31.3 13.4 46 481-526 335-380 (594)
285 PF05335 DUF745: Protein of un 49.4 2.7E+02 0.0059 27.5 13.7 59 459-517 66-124 (188)
286 PF02183 HALZ: Homeobox associ 49.3 59 0.0013 25.5 5.6 30 495-524 5-34 (45)
287 TIGR00634 recN DNA repair prot 49.3 3.3E+02 0.0071 30.0 13.2 37 524-560 333-369 (563)
288 KOG0018 Structural maintenance 49.3 2E+02 0.0044 35.3 12.2 64 466-533 651-721 (1141)
289 PRK14162 heat shock protein Gr 49.3 76 0.0016 31.4 7.6 26 491-516 49-74 (194)
290 PRK11281 hypothetical protein; 49.2 1.7E+02 0.0037 35.8 11.8 47 490-536 280-326 (1113)
291 PRK14139 heat shock protein Gr 49.1 76 0.0016 31.2 7.6 27 534-560 57-83 (185)
292 PF04977 DivIC: Septum formati 49.1 60 0.0013 25.7 5.8 38 459-496 23-63 (80)
293 PF07111 HCR: Alpha helical co 48.4 2.5E+02 0.0055 33.2 12.5 91 465-555 174-274 (739)
294 PF13166 AAA_13: AAA domain 48.1 4E+02 0.0086 29.5 13.6 12 59-70 60-71 (712)
295 PRK14145 heat shock protein Gr 47.9 87 0.0019 31.1 7.8 19 537-555 73-91 (196)
296 cd07651 F-BAR_PombeCdc15_like 47.9 2.7E+02 0.0059 27.0 11.2 44 509-552 100-143 (236)
297 PF05565 Sipho_Gp157: Siphovir 47.8 2.2E+02 0.0047 26.9 10.1 86 459-547 7-92 (162)
298 PF01544 CorA: CorA-like Mg2+ 47.7 2.5E+02 0.0055 26.6 11.7 70 459-533 106-175 (292)
299 KOG4302 Microtubule-associated 47.6 1.4E+02 0.003 34.7 10.3 84 468-551 55-181 (660)
300 PF07544 Med9: RNA polymerase 47.3 70 0.0015 27.3 6.3 58 469-537 23-80 (83)
301 PF14389 Lzipper-MIP1: Leucine 47.2 64 0.0014 28.0 6.1 61 465-525 6-70 (88)
302 PF10481 CENP-F_N: Cenp-F N-te 47.2 3.9E+02 0.0085 28.7 12.9 26 468-493 19-44 (307)
303 PF10805 DUF2730: Protein of u 47.1 1.1E+02 0.0023 27.2 7.6 51 496-546 36-88 (106)
304 PF12709 Kinetocho_Slk19: Cent 47.0 1.7E+02 0.0037 26.2 8.7 32 516-547 49-80 (87)
305 PRK13729 conjugal transfer pil 46.9 69 0.0015 35.8 7.7 20 481-500 69-88 (475)
306 COG3879 Uncharacterized protei 46.5 1.5E+02 0.0033 30.8 9.5 43 506-552 54-96 (247)
307 PF08826 DMPK_coil: DMPK coile 46.5 1.7E+02 0.0038 24.4 9.3 13 475-487 12-24 (61)
308 KOG2629 Peroxisomal membrane a 46.4 1E+02 0.0022 32.8 8.4 57 459-526 128-185 (300)
309 KOG0982 Centrosomal protein Nu 46.1 4.5E+02 0.0099 29.8 13.5 26 489-514 305-330 (502)
310 PF13851 GAS: Growth-arrest sp 46.0 3E+02 0.0065 27.0 14.7 101 467-567 48-152 (201)
311 KOG3096 Spliceosome-associated 46.0 3.6E+02 0.0078 27.9 11.9 90 457-563 89-182 (225)
312 PRK14151 heat shock protein Gr 45.9 76 0.0017 30.8 7.0 22 537-558 48-69 (176)
313 PF04375 HemX: HemX; InterPro 45.8 3.2E+02 0.0069 28.9 12.0 94 459-556 59-166 (372)
314 KOG0996 Structural maintenance 45.6 3.5E+02 0.0076 33.8 13.5 68 488-555 521-588 (1293)
315 KOG0976 Rho/Rac1-interacting s 45.5 2.3E+02 0.0051 34.4 11.7 73 466-541 47-124 (1265)
316 COG3883 Uncharacterized protei 45.5 1.3E+02 0.0029 31.3 9.0 59 469-527 33-91 (265)
317 PF09755 DUF2046: Uncharacteri 45.4 2.9E+02 0.0062 29.6 11.5 40 465-504 154-201 (310)
318 PRK12718 flgL flagellar hook-a 45.3 2.6E+02 0.0057 31.3 11.8 69 502-570 50-124 (510)
319 TIGR00998 8a0101 efflux pump m 45.3 1.1E+02 0.0024 30.2 8.2 20 532-551 148-167 (334)
320 PLN02678 seryl-tRNA synthetase 45.3 1.1E+02 0.0024 33.6 8.8 30 512-541 74-103 (448)
321 PRK11091 aerobic respiration c 45.2 3.4E+02 0.0074 30.1 12.6 37 491-527 106-142 (779)
322 PF13805 Pil1: Eisosome compon 44.9 2.2E+02 0.0047 29.9 10.4 76 481-557 138-215 (271)
323 PRK00295 hypothetical protein; 44.7 1.5E+02 0.0032 24.7 7.6 49 465-527 3-51 (68)
324 PRK10803 tol-pal system protei 44.6 72 0.0016 32.1 6.9 65 455-533 35-99 (263)
325 KOG0999 Microtubule-associated 44.6 5.4E+02 0.012 30.3 14.0 73 491-566 92-178 (772)
326 PF09738 DUF2051: Double stran 44.3 2.9E+02 0.0063 29.1 11.3 68 484-551 94-161 (302)
327 cd07655 F-BAR_PACSIN The F-BAR 44.3 3.4E+02 0.0074 27.1 11.9 76 478-553 61-156 (258)
328 PF11414 Suppressor_APC: Adeno 44.3 2.2E+02 0.0048 25.0 9.6 26 462-488 3-28 (84)
329 PF09787 Golgin_A5: Golgin sub 44.2 3.2E+02 0.007 30.0 12.1 106 460-566 194-310 (511)
330 PF05130 FlgN: FlgN protein; 44.1 2E+02 0.0042 24.3 8.6 67 469-535 39-121 (143)
331 PF11570 E2R135: Coiled-coil r 44.1 3.1E+02 0.0066 26.5 10.5 94 459-555 21-123 (136)
332 PF06120 Phage_HK97_TLTM: Tail 44.0 4.2E+02 0.0091 28.1 12.5 24 461-484 82-105 (301)
333 PF05103 DivIVA: DivIVA protei 43.7 19 0.00042 31.2 2.4 61 451-525 9-69 (131)
334 PF09730 BicD: Microtubule-ass 43.6 4.5E+02 0.0097 31.0 13.6 99 462-563 354-452 (717)
335 PRK05431 seryl-tRNA synthetase 43.4 1.2E+02 0.0026 32.6 8.7 32 500-531 71-102 (425)
336 cd07671 F-BAR_PSTPIP1 The F-BA 43.3 3.6E+02 0.0078 27.1 13.5 113 450-562 75-202 (242)
337 PF06103 DUF948: Bacterial pro 43.3 2E+02 0.0043 24.1 8.9 41 480-520 25-65 (90)
338 COG0419 SbcC ATPase involved i 43.2 5.1E+02 0.011 30.3 14.1 23 544-566 586-608 (908)
339 PRK14157 heat shock protein Gr 43.2 82 0.0018 32.1 7.0 48 514-561 82-129 (227)
340 TIGR00831 a_cpa1 Na+/H+ antipo 43.0 2.5E+02 0.0055 30.8 11.1 39 526-565 482-520 (525)
341 PF03961 DUF342: Protein of un 43.0 1.6E+02 0.0035 31.4 9.5 37 459-495 326-362 (451)
342 PF05262 Borrelia_P83: Borreli 42.9 1.3E+02 0.0028 33.7 9.0 21 535-555 279-299 (489)
343 TIGR02449 conserved hypothetic 42.7 2E+02 0.0043 24.5 8.1 43 489-531 15-57 (65)
344 PF00170 bZIP_1: bZIP transcri 42.7 1.7E+02 0.0037 23.2 8.0 12 511-522 28-39 (64)
345 PRK10636 putative ABC transpor 42.6 77 0.0017 35.3 7.3 23 461-483 564-586 (638)
346 PRK14163 heat shock protein Gr 42.5 99 0.0021 31.2 7.4 25 493-517 52-76 (214)
347 PRK06975 bifunctional uroporph 42.4 3.7E+02 0.0079 30.7 12.5 92 460-554 353-455 (656)
348 PF09728 Taxilin: Myosin-like 42.2 1.1E+02 0.0023 31.9 7.9 77 448-524 223-308 (309)
349 PRK13874 conjugal transfer pro 42.1 3.8E+02 0.0083 27.1 12.7 65 448-515 111-176 (230)
350 PRK11519 tyrosine kinase; Prov 42.0 3.6E+02 0.0077 30.8 12.4 30 528-557 368-397 (719)
351 PF06810 Phage_GP20: Phage min 41.8 2.8E+02 0.0061 26.3 9.9 36 460-495 13-48 (155)
352 cd07657 F-BAR_Fes_Fer The F-BA 41.7 3.8E+02 0.0081 26.9 11.5 79 473-551 118-196 (237)
353 PRK14155 heat shock protein Gr 41.3 89 0.0019 31.2 6.8 6 499-504 31-36 (208)
354 KOG0964 Structural maintenance 41.3 3.5E+02 0.0075 33.5 12.4 55 505-559 456-510 (1200)
355 KOG4657 Uncharacterized conser 41.2 4.4E+02 0.0096 27.6 14.1 37 524-560 101-140 (246)
356 TIGR01461 greB transcription e 41.0 91 0.002 29.4 6.6 59 459-525 7-68 (156)
357 PRK14141 heat shock protein Gr 40.6 95 0.0021 31.1 6.9 28 492-519 42-69 (209)
358 PF10805 DUF2730: Protein of u 40.4 1.8E+02 0.0038 25.9 7.9 13 459-471 34-46 (106)
359 KOG4360 Uncharacterized coiled 40.2 2.2E+02 0.0047 32.8 10.2 112 459-570 211-341 (596)
360 cd07680 F-BAR_PACSIN1 The F-BA 40.2 2.1E+02 0.0045 29.4 9.4 85 458-549 117-201 (258)
361 PF14257 DUF4349: Domain of un 40.1 1.3E+02 0.0028 29.6 7.7 68 451-523 123-190 (262)
362 PF09726 Macoilin: Transmembra 40.1 6.7E+02 0.014 29.3 26.2 68 456-523 414-495 (697)
363 PF11180 DUF2968: Protein of u 40.1 3.2E+02 0.007 27.6 10.4 72 483-557 110-181 (192)
364 PRK10476 multidrug resistance 40.0 4.2E+02 0.009 26.9 12.9 7 463-469 96-102 (346)
365 KOG2008 BTK-associated SH3-dom 40.0 2.8E+02 0.006 30.5 10.5 82 489-570 77-167 (426)
366 PRK03598 putative efflux pump 40.0 3.2E+02 0.007 27.4 10.6 19 532-550 147-165 (331)
367 TIGR00634 recN DNA repair prot 39.8 3.4E+02 0.0074 29.9 11.6 6 353-358 148-153 (563)
368 PRK14144 heat shock protein Gr 39.6 1.3E+02 0.0027 30.2 7.5 27 534-560 70-96 (199)
369 PF10458 Val_tRNA-synt_C: Valy 39.5 2E+02 0.0043 23.4 7.5 37 497-535 29-65 (66)
370 cd07596 BAR_SNX The Bin/Amphip 39.5 3E+02 0.0064 25.1 13.3 59 475-533 111-169 (218)
371 PTZ00454 26S protease regulato 39.4 98 0.0021 33.0 7.2 40 483-522 24-63 (398)
372 PLN03188 kinesin-12 family pro 39.0 1.4E+02 0.0031 37.1 9.2 36 476-515 1099-1134(1320)
373 TIGR00383 corA magnesium Mg(2+ 39.0 4E+02 0.0087 26.5 11.2 70 464-538 135-204 (318)
374 PF07445 priB_priC: Primosomal 39.0 1.2E+02 0.0026 29.1 7.1 77 463-545 2-80 (173)
375 cd07652 F-BAR_Rgd1 The F-BAR ( 39.0 3.4E+02 0.0073 27.0 10.4 52 477-528 61-112 (234)
376 KOG0993 Rab5 GTPase effector R 38.9 3.3E+02 0.0071 30.8 11.1 66 464-532 303-368 (542)
377 PF10191 COG7: Golgi complex c 38.9 3.8E+02 0.0082 31.2 12.2 93 464-560 42-137 (766)
378 PRK00736 hypothetical protein; 38.7 2E+02 0.0043 24.0 7.5 49 465-527 3-51 (68)
379 PHA02816 hypothetical protein; 38.6 20 0.00043 32.2 1.7 29 54-82 37-65 (106)
380 PRK14146 heat shock protein Gr 38.6 1.2E+02 0.0026 30.4 7.3 49 513-561 58-106 (215)
381 PF11180 DUF2968: Protein of u 38.5 3.5E+02 0.0077 27.3 10.4 75 492-566 109-183 (192)
382 PLN02678 seryl-tRNA synthetase 38.4 2.1E+02 0.0045 31.6 9.6 34 499-532 75-108 (448)
383 PF06637 PV-1: PV-1 protein (P 38.2 3E+02 0.0065 30.7 10.6 39 459-497 291-329 (442)
384 PRK14161 heat shock protein Gr 37.8 1.3E+02 0.0027 29.4 7.1 55 462-522 6-60 (178)
385 PF06103 DUF948: Bacterial pro 37.7 2.4E+02 0.0053 23.6 9.0 12 464-475 30-41 (90)
386 PRK00226 greA transcription el 37.7 94 0.002 28.8 6.0 62 459-526 9-71 (157)
387 cd07671 F-BAR_PSTPIP1 The F-BA 37.6 3E+02 0.0065 27.7 9.9 64 488-551 78-141 (242)
388 PRK10803 tol-pal system protei 37.5 1.7E+02 0.0038 29.4 8.3 37 500-536 45-81 (263)
389 PF02970 TBCA: Tubulin binding 37.4 2.8E+02 0.006 24.1 10.4 72 468-540 8-79 (90)
390 PF04012 PspA_IM30: PspA/IM30 37.4 3.8E+02 0.0081 25.6 13.7 29 460-488 37-65 (221)
391 TIGR00998 8a0101 efflux pump m 37.3 4.2E+02 0.0092 26.2 13.2 22 459-480 79-100 (334)
392 PRK12717 flgL flagellar hook-a 37.1 4.3E+02 0.0092 29.5 11.8 69 501-570 49-124 (523)
393 PF11559 ADIP: Afadin- and alp 37.1 3.2E+02 0.007 24.8 14.8 50 493-542 71-120 (151)
394 PF03357 Snf7: Snf7; InterPro 37.0 1.3E+02 0.0028 26.8 6.6 55 512-568 4-58 (171)
395 KOG4571 Activating transcripti 37.0 1.9E+02 0.0041 30.8 8.6 52 475-526 235-286 (294)
396 KOG4403 Cell surface glycoprot 36.8 1.6E+02 0.0036 33.2 8.5 26 479-504 264-289 (575)
397 PF04871 Uso1_p115_C: Uso1 / p 36.8 3.5E+02 0.0077 25.2 11.0 22 502-523 27-48 (136)
398 COG4026 Uncharacterized protei 36.7 2.5E+02 0.0053 29.6 9.2 53 483-535 144-196 (290)
399 cd07649 F-BAR_GAS7 The F-BAR ( 36.6 3.4E+02 0.0074 27.2 10.1 61 488-548 78-139 (233)
400 PF10234 Cluap1: Clusterin-ass 36.5 3.9E+02 0.0084 28.0 10.7 6 537-542 225-230 (267)
401 PF05700 BCAS2: Breast carcino 36.3 4.3E+02 0.0093 26.0 11.0 9 336-344 12-20 (221)
402 PRK10869 recombination and rep 36.3 5.6E+02 0.012 28.6 12.6 37 521-557 325-361 (553)
403 PRK11519 tyrosine kinase; Prov 36.2 2.8E+02 0.0061 31.5 10.5 21 549-569 344-364 (719)
404 PRK00888 ftsB cell division pr 35.9 78 0.0017 28.2 5.0 9 537-545 68-76 (105)
405 cd07672 F-BAR_PSTPIP2 The F-BA 35.9 4.7E+02 0.01 26.3 11.2 65 487-551 78-142 (240)
406 PF14915 CCDC144C: CCDC144C pr 35.8 5.4E+02 0.012 27.7 11.7 80 463-543 102-192 (305)
407 PF05557 MAD: Mitotic checkpoi 35.7 12 0.00026 41.9 0.0 44 513-556 175-218 (722)
408 PRK11448 hsdR type I restricti 35.7 2.1E+02 0.0045 34.9 9.8 11 460-470 149-159 (1123)
409 TIGR02780 TrbJ_Ti P-type conju 35.7 4.7E+02 0.01 26.2 12.1 61 449-509 111-174 (246)
410 PF02183 HALZ: Homeobox associ 35.6 1.3E+02 0.0028 23.6 5.6 33 502-534 5-37 (45)
411 PHA02047 phage lambda Rz1-like 35.5 2.5E+02 0.0055 25.9 8.1 50 480-529 26-75 (101)
412 PF09304 Cortex-I_coil: Cortex 35.4 3.7E+02 0.0081 25.0 13.5 74 463-536 5-78 (107)
413 PRK14153 heat shock protein Gr 35.2 1.1E+02 0.0023 30.5 6.3 32 493-524 45-76 (194)
414 PRK10869 recombination and rep 35.2 3E+02 0.0065 30.7 10.3 21 548-568 338-358 (553)
415 PF13166 AAA_13: AAA domain 35.0 6.7E+02 0.014 27.8 14.7 14 459-472 268-281 (712)
416 PRK11147 ABC transporter ATPas 34.9 1E+02 0.0022 34.1 6.8 25 460-484 568-592 (635)
417 PRK12765 flagellar capping pro 34.8 1.7E+02 0.0037 33.1 8.5 55 464-528 536-590 (595)
418 TIGR03752 conj_TIGR03752 integ 34.8 2.6E+02 0.0056 31.5 9.6 14 489-502 103-116 (472)
419 PRK05892 nucleoside diphosphat 34.6 1.5E+02 0.0033 28.1 7.0 62 458-525 9-70 (158)
420 KOG4403 Cell surface glycoprot 34.5 3.8E+02 0.0082 30.5 10.8 73 475-554 281-371 (575)
421 KOG4370 Ral-GTPase effector RL 34.4 1.1E+02 0.0024 34.4 6.8 54 487-547 412-465 (514)
422 PF13514 AAA_27: AAA domain 34.4 5.4E+02 0.012 30.8 12.8 92 460-551 608-708 (1111)
423 PF09755 DUF2046: Uncharacteri 34.4 6.2E+02 0.013 27.3 12.7 13 554-566 159-171 (310)
424 KOG0995 Centromere-associated 34.2 5.8E+02 0.013 29.6 12.3 82 467-548 308-392 (581)
425 PF12998 ING: Inhibitor of gro 34.1 2.8E+02 0.006 23.2 8.7 69 465-536 3-77 (105)
426 KOG4815 Muscular protein impli 34.1 1.5E+02 0.0032 32.4 7.5 62 500-567 284-360 (511)
427 KOG4643 Uncharacterized coiled 34.1 9.6E+02 0.021 30.0 14.5 31 536-566 515-545 (1195)
428 PLN03229 acetyl-coenzyme A car 34.1 1.9E+02 0.004 34.3 8.8 88 474-561 485-588 (762)
429 KOG2391 Vacuolar sorting prote 33.9 6.8E+02 0.015 27.6 16.5 64 465-528 207-272 (365)
430 PRK05892 nucleoside diphosphat 33.8 1.3E+02 0.0029 28.4 6.4 15 510-524 12-26 (158)
431 cd07656 F-BAR_srGAP The F-BAR 33.7 5.1E+02 0.011 26.1 13.4 83 470-552 120-219 (241)
432 TIGR02209 ftsL_broad cell divi 33.6 1.9E+02 0.0042 23.5 6.6 47 511-562 26-72 (85)
433 PF12072 DUF3552: Domain of un 33.6 4.5E+02 0.0098 25.4 14.6 56 483-538 94-149 (201)
434 cd07649 F-BAR_GAS7 The F-BAR ( 33.6 4.8E+02 0.01 26.2 10.5 73 459-531 99-176 (233)
435 TIGR00414 serS seryl-tRNA synt 33.5 2.1E+02 0.0045 30.8 8.6 32 500-531 74-105 (418)
436 COG1317 FliH Flagellar biosynt 33.4 4.5E+02 0.0097 26.4 10.3 69 458-533 53-123 (234)
437 COG1566 EmrA Multidrug resista 33.4 4.7E+02 0.01 28.1 11.0 37 460-496 91-127 (352)
438 PF07889 DUF1664: Protein of u 33.4 4.1E+02 0.009 24.9 9.7 7 485-491 79-85 (126)
439 PF00458 WHEP-TRS: WHEP-TRS do 33.2 1.1E+02 0.0024 25.0 5.1 42 500-542 1-42 (56)
440 cd07675 F-BAR_FNBP1L The F-BAR 33.2 2.5E+02 0.0055 28.8 8.7 63 490-552 75-149 (252)
441 PF06120 Phage_HK97_TLTM: Tail 33.2 6.2E+02 0.013 26.9 14.0 63 465-527 39-106 (301)
442 PF05335 DUF745: Protein of un 33.2 4.9E+02 0.011 25.8 12.9 57 479-535 114-170 (188)
443 PF12777 MT: Microtubule-bindi 33.2 5.8E+02 0.013 26.6 12.3 58 468-525 16-73 (344)
444 PF07795 DUF1635: Protein of u 33.0 1.6E+02 0.0034 30.1 7.1 35 515-549 25-59 (214)
445 PRK05431 seryl-tRNA synthetase 33.0 1.6E+02 0.0034 31.7 7.6 14 511-524 44-57 (425)
446 cd07307 BAR The Bin/Amphiphysi 32.9 3.2E+02 0.007 23.5 11.8 56 506-561 91-152 (194)
447 PRK14160 heat shock protein Gr 32.7 1.9E+02 0.0042 29.1 7.7 10 545-554 119-128 (211)
448 PF09744 Jnk-SapK_ap_N: JNK_SA 32.6 4.6E+02 0.01 25.3 12.7 72 489-567 37-112 (158)
449 PRK00226 greA transcription el 32.6 1.1E+02 0.0023 28.4 5.5 15 509-523 10-24 (157)
450 cd07658 F-BAR_NOSTRIN The F-BA 32.3 5.1E+02 0.011 25.7 12.1 28 478-505 120-147 (239)
451 PF13747 DUF4164: Domain of un 32.1 3.5E+02 0.0075 23.7 11.4 47 508-554 38-84 (89)
452 COG3599 DivIVA Cell division i 32.0 4.3E+02 0.0093 26.6 9.9 77 487-563 29-107 (212)
453 KOG0963 Transcription factor/C 32.0 9E+02 0.02 28.4 14.5 37 532-568 230-266 (629)
454 PRK06569 F0F1 ATP synthase sub 31.9 4.8E+02 0.01 25.3 10.9 34 511-544 57-91 (155)
455 PRK08032 fliD flagellar cappin 31.9 2E+02 0.0043 31.2 8.2 36 499-534 410-445 (462)
456 PF06160 EzrA: Septation ring 31.7 4E+02 0.0086 29.7 10.6 96 472-570 338-433 (560)
457 KOG3809 Microtubule-binding pr 31.7 5.6E+02 0.012 29.3 11.5 94 458-558 477-581 (583)
458 COG2919 Septum formation initi 31.7 1.5E+02 0.0033 26.7 6.2 6 549-554 90-95 (117)
459 KOG1029 Endocytic adaptor prot 31.6 8.7E+02 0.019 29.8 13.4 58 474-531 486-553 (1118)
460 PLN02320 seryl-tRNA synthetase 31.4 2.1E+02 0.0046 32.1 8.5 31 511-541 132-162 (502)
461 TIGR01554 major_cap_HK97 phage 31.4 2.9E+02 0.0062 28.6 8.9 18 508-525 33-50 (378)
462 PF10498 IFT57: Intra-flagella 31.1 2.6E+02 0.0057 29.9 8.8 29 495-523 280-308 (359)
463 PF10234 Cluap1: Clusterin-ass 31.0 6.4E+02 0.014 26.4 11.6 36 449-484 106-141 (267)
464 PRK13729 conjugal transfer pil 31.0 1.1E+02 0.0024 34.2 6.2 18 508-525 103-120 (475)
465 PRK11091 aerobic respiration c 31.0 5.3E+02 0.012 28.6 11.4 37 487-523 109-145 (779)
466 KOG0796 Spliceosome subunit [R 30.8 3.2E+02 0.0068 29.5 9.2 15 461-475 84-98 (319)
467 KOG0994 Extracellular matrix g 30.8 6.1E+02 0.013 32.3 12.3 40 530-569 1598-1637(1758)
468 KOG0239 Kinesin (KAR3 subfamil 30.8 8.1E+02 0.018 28.6 13.0 45 475-519 211-258 (670)
469 PF11577 NEMO: NF-kappa-B esse 30.8 1.4E+02 0.0031 25.4 5.5 38 460-497 31-68 (68)
470 KOG4673 Transcription factor T 30.7 8.8E+02 0.019 29.3 13.2 96 458-554 451-554 (961)
471 PRK04406 hypothetical protein; 30.7 3.4E+02 0.0075 23.2 8.3 50 464-527 8-57 (75)
472 TIGR01730 RND_mfp RND family e 30.6 3E+02 0.0066 26.5 8.4 31 459-489 63-93 (322)
473 KOG4182 Uncharacterized conser 30.6 3.2E+02 0.007 31.6 9.6 84 450-539 21-104 (828)
474 TIGR00414 serS seryl-tRNA synt 30.5 3E+02 0.0065 29.7 9.1 17 549-565 74-90 (418)
475 cd07685 F-BAR_Fes The F-BAR (F 30.4 3.1E+02 0.0068 28.4 8.8 69 487-555 75-156 (237)
476 PF05546 She9_MDM33: She9 / Md 30.4 1.7E+02 0.0037 29.7 6.8 74 490-563 4-79 (207)
477 PF15066 CAGE1: Cancer-associa 30.3 7.7E+02 0.017 28.3 12.3 92 460-551 362-499 (527)
478 KOG2896 UV radiation resistanc 30.3 5.7E+02 0.012 28.3 11.1 57 490-550 119-175 (377)
479 PF13815 Dzip-like_N: Iguana/D 30.1 4E+02 0.0087 23.8 8.6 36 465-500 64-99 (118)
480 PRK13922 rod shape-determining 30.1 4.6E+02 0.01 26.0 9.8 11 533-543 96-106 (276)
481 PF00435 Spectrin: Spectrin re 30.1 2.6E+02 0.0057 21.6 11.0 72 458-532 32-103 (105)
482 KOG0946 ER-Golgi vesicle-tethe 30.0 4E+02 0.0087 32.3 10.5 83 465-547 655-747 (970)
483 PRK11578 macrolide transporter 29.9 6.2E+02 0.014 25.9 11.1 27 516-542 144-170 (370)
484 KOG4807 F-actin binding protei 29.8 5.8E+02 0.013 28.9 11.2 92 462-559 343-454 (593)
485 PRK10246 exonuclease subunit S 29.7 1.1E+03 0.023 28.5 15.2 107 463-569 619-756 (1047)
486 TIGR00570 cdk7 CDK-activating 29.7 4.4E+02 0.0095 28.2 10.0 103 457-561 84-198 (309)
487 COG0576 GrpE Molecular chapero 29.7 2.2E+02 0.0047 27.9 7.3 55 510-564 37-91 (193)
488 PF01576 Myosin_tail_1: Myosin 29.6 18 0.00039 42.0 0.0 110 461-570 554-663 (859)
489 PF03938 OmpH: Outer membrane 29.4 4.2E+02 0.009 23.7 9.6 84 478-561 26-114 (158)
490 TIGR03689 pup_AAA proteasome A 29.3 92 0.002 34.7 5.3 41 483-523 3-43 (512)
491 cd07307 BAR The Bin/Amphiphysi 29.0 3.8E+02 0.0082 23.1 12.3 107 461-567 1-137 (194)
492 KOG2264 Exostosin EXT1L [Signa 28.9 4E+02 0.0086 31.5 10.0 71 467-537 79-149 (907)
493 TIGR02971 heterocyst_DevB ABC 28.9 5.9E+02 0.013 25.3 11.5 94 459-552 89-201 (327)
494 PRK10865 protein disaggregatio 28.9 9.6E+02 0.021 28.4 13.4 101 457-558 407-515 (857)
495 PRK15178 Vi polysaccharide exp 28.8 3.9E+02 0.0084 29.7 9.7 84 484-567 215-330 (434)
496 PRK14149 heat shock protein Gr 28.7 1.9E+02 0.0041 28.7 6.8 50 515-564 42-91 (191)
497 cd07627 BAR_Vps5p The Bin/Amph 28.7 5.5E+02 0.012 24.9 10.5 82 460-555 94-175 (216)
498 COG2882 FliJ Flagellar biosynt 28.4 5.5E+02 0.012 24.8 13.9 95 462-556 4-111 (148)
499 PF00509 Hemagglutinin: Haemag 28.3 79 0.0017 36.0 4.6 95 451-569 355-452 (550)
500 PF01576 Myosin_tail_1: Myosin 28.2 19 0.00042 41.7 0.0 111 460-570 602-712 (859)
No 1
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.74 E-value=0.041 Score=55.73 Aligned_cols=106 Identities=23% Similarity=0.354 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK----SEMEKLQEEIKVQLVELESFRNE 538 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk----~dmErLq~Ei~aQl~~LEs~~~E 538 (570)
..|+.|++.|-+++-.|...+++..++...|.....+|....+.....+.++. .+++.|+++|..+..++++.+.+
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~ 231 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKE 231 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888889899999999999999999999999999988887777553 67888888888888888877777
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304 539 YANVRLECNAADERAKILASEVIGLEEKVR 568 (570)
Q Consensus 539 rdaArle~~aA~ERak~LAaEVV~LEEk~l 568 (570)
.+..+.+..+-.+....+..+.-.|++.+.
T Consensus 232 l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 232 LAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766666666666666555543
No 2
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.53 E-value=0.34 Score=49.85 Aligned_cols=104 Identities=17% Similarity=0.313 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK----SEMEKLQEEIKVQLVELESFRNEY 539 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk----~dmErLq~Ei~aQl~~LEs~~~Er 539 (570)
.|+.|++.|-.++-.|...++....+...|-.....|....++......++. +++.+++++|+.+..+++..+.+.
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558889999999999999999999999999999999999998888888874 478888888888888888877777
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 540 ANVRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 540 daArle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
...+.+..+-..+-.....+...|++.+
T Consensus 228 ~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 228 EELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666666665555555555555444
No 3
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.48 E-value=0.11 Score=49.16 Aligned_cols=110 Identities=22% Similarity=0.268 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Er 539 (570)
.-.+.|++-+.++-+.|-.|+.-|-....-.+.|-.+..+...+-+.....+..|+.++..|..+|+.....++.+..|+
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL 153 (194)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666677777777777777777777778888888888899999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhc
Q 008304 540 ANVRLECNAADERAKILASEVIGLEEKVRS 569 (570)
Q Consensus 540 daArle~~aA~ERak~LAaEVV~LEEk~lq 569 (570)
.+.+++++.+.+|.+.|=.|=-.|=+|.|+
T Consensus 154 ~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 154 QALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988777777653
No 4
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.36 E-value=0.28 Score=49.86 Aligned_cols=106 Identities=25% Similarity=0.357 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLA----AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA----~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Er 539 (570)
.|...+.+|...+-+|.+.+..-+++++.+. .|-.++-...-++...+.+.+.++++|+.++..-...++.+.++.
T Consensus 174 ~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k 253 (325)
T PF08317_consen 174 QLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK 253 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777888888888888877765 344566666667777777777777788877777777777777777
Q ss_pred HHHHhhhhhHH---HHHH-HHHHhhhhhhhhhhc
Q 008304 540 ANVRLECNAAD---ERAK-ILASEVIGLEEKVRS 569 (570)
Q Consensus 540 daArle~~aA~---ERak-~LAaEVV~LEEk~lq 569 (570)
...+.+..+|. |..| -...||..|-.++..
T Consensus 254 ~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~ 287 (325)
T PF08317_consen 254 QELLAEIAEAEKIREECRGWTRSEVKRLKAKVDA 287 (325)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 77766666665 2222 356777777766543
No 5
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.22 E-value=0.82 Score=43.68 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRA--------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 532 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~--------laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~L 532 (570)
.+..|+..|.++-.++-.|++.++..-+ -.+.+..+-..+.++.+.....+.+++..++++++++......|
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888887776433 66777777777777777777777777777777777777666666
Q ss_pred hhhHHHHH
Q 008304 533 ESFRNEYA 540 (570)
Q Consensus 533 Es~~~Erd 540 (570)
+.-+....
T Consensus 101 ~~~~~~l~ 108 (302)
T PF10186_consen 101 EQRRSRLS 108 (302)
T ss_pred HHHHHHHH
Confidence 66554444
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.18 E-value=0.52 Score=52.26 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSS 499 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsA 499 (570)
.+...|++.++++..+--.+...+...+.-.++|..+-..
T Consensus 677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~ 716 (1179)
T TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ 716 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444444444444444444433333
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.15 E-value=0.48 Score=52.54 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~a 527 (570)
+...|++.|++|..+.-.++..++..++-.+.+..+-..+.....+....+.+++.++++++.+++.
T Consensus 671 ~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1179)
T TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737 (1179)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555544444444444433333333333
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.08 E-value=0.56 Score=52.44 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 008304 514 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVI 561 (570)
Q Consensus 514 Lk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV 561 (570)
|+.++++|+.++......++.+..++...+.++..+.++-..+-.++-
T Consensus 432 l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~ 479 (1164)
T TIGR02169 432 IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344433333333333333333333333
No 9
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.25 E-value=0.82 Score=50.80 Aligned_cols=96 Identities=24% Similarity=0.299 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 544 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArl 544 (570)
||..|+++-+||-.|+.....-.+-+++|-.+++.| ...+...++++++|+++.+.-....+.++.|++-...
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l-------~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~ 213 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERL-------EAELEQEEEEMEQLKQQQKELTESSEELKEERESLKE 213 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999988999988877766555555555555555 4455555666666666666666777888899998888
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhh
Q 008304 545 ECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 545 e~~aA~ERak~LAaEVV~LEEk~ 567 (570)
+...+..|.+.|-.++..|..+.
T Consensus 214 q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 214 QLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999988888887765
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.24 E-value=1.3 Score=43.50 Aligned_cols=101 Identities=24% Similarity=0.263 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008304 463 AALEQHIEDLTQE--------KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (570)
Q Consensus 463 AaLqQhIeDLT~E--------KfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs 534 (570)
..|+..|..+... +-.|.+.|...+...+.++.|+..|.-..+.....+..++..++.....+..-..++..
T Consensus 28 ~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~ 107 (312)
T PF00038_consen 28 KRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELES 107 (312)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677766655 55688888999999999999999998888888888888888888888888888888888
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 008304 535 FRNEYANVRLECNAADERAKILASEVIGL 563 (570)
Q Consensus 535 ~~~ErdaArle~~aA~ERak~LAaEVV~L 563 (570)
++.+.+.+-+...+...+.+.|--|+--|
T Consensus 108 lrk~ld~~~~~r~~le~~i~~L~eEl~fl 136 (312)
T PF00038_consen 108 LRKDLDEETLARVDLENQIQSLKEELEFL 136 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence 88888888888888888888777765443
No 11
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.98 E-value=1.6 Score=42.69 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~E 524 (570)
+..|+-|+++..||-.|++.+.+-.+=.+.|-..|..+.+....|...+.+|+.+++.++..
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888888888888888888888888888888888887777643
No 12
>PRK09039 hypothetical protein; Validated
Probab=93.85 E-value=1.1 Score=46.34 Aligned_cols=58 Identities=10% Similarity=0.163 Sum_probs=36.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHH
Q 008304 501 TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS 558 (570)
Q Consensus 501 TdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAa 558 (570)
.+.+.++.....+...++.+|++||++-...|.++.++.++++..-.++.++-..|-.
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666777776666666777777777776666666665544433
No 13
>PRK11637 AmiB activator; Provisional
Probab=93.78 E-value=1.7 Score=45.31 Aligned_cols=85 Identities=21% Similarity=0.300 Sum_probs=62.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (570)
Q Consensus 456 ~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~ 535 (570)
....+-+..|++..++|..+|-.|...++...++-..+..+-..|...-.++...+.+|+.++..++.+++......+.+
T Consensus 166 ~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L 245 (428)
T PRK11637 166 QARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRL 245 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566677777788888888888888888888888888888888888888888888877776666665555555555
Q ss_pred HHHHH
Q 008304 536 RNEYA 540 (570)
Q Consensus 536 ~~Erd 540 (570)
..+.+
T Consensus 246 ~~~I~ 250 (428)
T PRK11637 246 RDSIA 250 (428)
T ss_pred HHHHH
Confidence 44443
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=93.72 E-value=1.5 Score=48.95 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
+.+.|+..|+++.+++-.|...++.++++. .|...-+.+.+..+.....+....+..+.|++++......++....+++
T Consensus 483 ~~~~le~~l~~~~~~~e~l~~~~~~~~~l~-~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~ 561 (880)
T PRK02224 483 ELEDLEEEVEEVEERLERAEDLVEAEDRIE-RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA 561 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665554444444433333 3434444444445555555555555566666666655556655556666
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304 541 NVRLECNAADERAKILASEVIGLEEKVR 568 (570)
Q Consensus 541 aArle~~aA~ERak~LAaEVV~LEEk~l 568 (570)
.++.+...+.++...+..++-.||.+..
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 589 (880)
T PRK02224 562 EAEEEAEEAREEVAELNSKLAELKERIE 589 (880)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666655543
No 15
>PRK11637 AmiB activator; Provisional
Probab=93.68 E-value=1 Score=47.01 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=63.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008304 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 537 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ 537 (570)
..++...|++-|+++-++.-.+++.+.....-.+.|..+-..+..++|+....+.+++.++++++.+|......++..+.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888877777777777777777777777788888888888888888888888888888777777776664
Q ss_pred HH
Q 008304 538 EY 539 (570)
Q Consensus 538 Er 539 (570)
++
T Consensus 125 ~l 126 (428)
T PRK11637 125 LL 126 (428)
T ss_pred HH
Confidence 44
No 16
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.44 E-value=4.5 Score=46.43 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=57.6
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHH
Q 008304 450 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516 (570)
Q Consensus 450 ~~~F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~ 516 (570)
.-|.+|--+-.++..|+|-+.-+-.||-+|...|+.+|.-.+.--.+-+..+++.|..+..|++|+.
T Consensus 255 v~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 255 VSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred cchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466777778899999999999999999999999999988888788888888888888888888877
No 17
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.29 E-value=0.99 Score=44.22 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=51.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008304 455 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (570)
Q Consensus 455 s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs 534 (570)
.+.-.+...+||+-|++|+.+--.+. +++..+...+.+++++....+++|+.+-++|++|++....+++.
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~----------~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNID----------NTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999885433322 33445555566666666667777777777777776666666666
Q ss_pred hHHHHHHHH
Q 008304 535 FRNEYANVR 543 (570)
Q Consensus 535 ~~~ErdaAr 543 (570)
+.+|.+..+
T Consensus 158 l~~~~~~~~ 166 (206)
T PRK10884 158 ANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHH
Confidence 655555443
No 18
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=92.93 E-value=0.66 Score=38.76 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 507 Q~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
....+..|+..+.++.+.+.++..++..+..|||.|......|-++..-|-+||-.|....
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999999998887653
No 19
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=92.90 E-value=3.6 Score=37.68 Aligned_cols=89 Identities=18% Similarity=0.258 Sum_probs=67.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHhhhh
Q 008304 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-LVELESF 535 (570)
Q Consensus 457 ~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQ-l~~LEs~ 535 (570)
......+.||.+||+.....-.|...=+.=+....+|-++|.+++.+-|.....|.++...|+-.. .+. .+...-.
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK---~ak~~l~~r~~ 89 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEK---QAKLELESRLL 89 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 346789999999999988888887776777788899999999999999999999988888777522 222 3333445
Q ss_pred HHHHHHHHhhhhh
Q 008304 536 RNEYANVRLECNA 548 (570)
Q Consensus 536 ~~ErdaArle~~a 548 (570)
++|.|.|.++.--
T Consensus 90 k~~~dka~lel~l 102 (107)
T PF09304_consen 90 KAQKDKAILELKL 102 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHH
Confidence 6888888776543
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.26 E-value=2.8 Score=49.36 Aligned_cols=106 Identities=24% Similarity=0.375 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
+++.|..++.++..+...|.+.++...+-.+.|....+.+..+--+....+..++.+++.+..+|......++.++.++.
T Consensus 384 ~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 463 (1163)
T COG1196 384 ELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK 463 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555544444444444444444444444444444444445555555555555555554444
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhh
Q 008304 541 NVRLECNAADERAKILASEVIGLEEK 566 (570)
Q Consensus 541 aArle~~aA~ERak~LAaEVV~LEEk 566 (570)
.+..+...+.+.-+.+-.++-.++.+
T Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 489 (1163)
T COG1196 464 ELERELAELQEELQRLEKELSSLEAR 489 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 21
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.07 E-value=3.2 Score=43.66 Aligned_cols=53 Identities=6% Similarity=0.206 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHhHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALS---ESLAAENSSLTDSYNQQRSVV 511 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~la---EsLA~ENsALTdryNqQ~~~v 511 (570)
...+..|+.-|++|..+.-.|...+....+.. +.+..+-..+.+..+.....+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i 353 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSL 353 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888877777333333 333333334444444444443
No 22
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.97 E-value=6.5 Score=39.28 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008304 467 QHIEDLTQEKFALQRSLEASR 487 (570)
Q Consensus 467 QhIeDLT~EKfaLqRaLeks~ 487 (570)
..++.+..+.-.+...++..+
T Consensus 144 ~~~~~l~~~i~~~~~~i~~~~ 164 (423)
T TIGR01843 144 AQLELILAQIKQLEAELAGLQ 164 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444433333333333
No 23
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=91.83 E-value=2 Score=37.22 Aligned_cols=74 Identities=24% Similarity=0.291 Sum_probs=62.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008304 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (570)
Q Consensus 456 ~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LE 533 (570)
.++-.++..|||.|--|+.||-.--.---.+++-.+.|-.|+-.|....+.+...+.+|++ ++.++..++..+|
T Consensus 20 ~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~----~E~~~~~~l~~~E 93 (96)
T PF08647_consen 20 DKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE----TEKEFVRKLKNLE 93 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHhh
Confidence 3456789999999999999998888888888888999999999999999999999999988 6667666666554
No 24
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.82 E-value=1.8 Score=44.45 Aligned_cols=28 Identities=39% Similarity=0.518 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASR 487 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~ 487 (570)
.+.+.+++-|++|.+|.-.|...|....
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE 70 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELE 70 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 25
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.45 E-value=0.86 Score=41.58 Aligned_cols=62 Identities=26% Similarity=0.340 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHH---HHHHHhhhhhhhhhh
Q 008304 507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA---KILASEVIGLEEKVR 568 (570)
Q Consensus 507 Q~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERa---k~LAaEVV~LEEk~l 568 (570)
....|+.|+..+.+++.|+..-...++.+..+|+.++.|.....++. +..+.++-.|+.++-
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~ 78 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELE 78 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888888888888888887777666 566666666666654
No 26
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=90.83 E-value=8.3 Score=40.51 Aligned_cols=113 Identities=17% Similarity=0.249 Sum_probs=67.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhhhH---HHHHHHHhHHHHHHHHH
Q 008304 455 STKHNEDFAALEQHIEDLTQEKFALQRSLEASR---------------ALSESLAAENSS---LTDSYNQQRSVVNQLKS 516 (570)
Q Consensus 455 s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~---------------~laEsLA~ENsA---LTdryNqQ~~~v~qLk~ 516 (570)
...+...+.+||+-|.+|-+|-..|--...+-. +.+++|+.-|.. |++--..........++
T Consensus 155 ~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQE 234 (306)
T PF04849_consen 155 SSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQE 234 (306)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 344567789999999999988877765444333 122333333322 11111122222222233
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 517 dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
++.+|..+|.--...+..+..|-...++-..++.+.=..|++|+..|.+|-
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334344444555667777788888888999999999999999985
No 27
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.83 E-value=5.5 Score=40.40 Aligned_cols=99 Identities=23% Similarity=0.312 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhH--HHHH
Q 008304 470 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI-------KVQLVELESFR--NEYA 540 (570)
Q Consensus 470 eDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei-------~aQl~~LEs~~--~Erd 540 (570)
..|..|++.|.+-..-.++..+.+-.|-+++-+++=..--.+..|+.++-+++.+| +.-...+.+++ -||.
T Consensus 13 q~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~ 92 (239)
T COG1579 13 QKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELR 92 (239)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34445555555544444444444445555555555444444444444444444444 33334444444 6778
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304 541 NVRLECNAADERAKILASEVIGLEEKVR 568 (570)
Q Consensus 541 aArle~~aA~ERak~LAaEVV~LEEk~l 568 (570)
+...+...|.+|...|-.|+..|.++.-
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~ 120 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIE 120 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899998888888888877653
No 28
>PRK09039 hypothetical protein; Validated
Probab=90.83 E-value=5 Score=41.70 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=37.7
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHH
Q 008304 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER 552 (570)
Q Consensus 492 sLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ER 552 (570)
.|.++-..+...|.+..-.|..|+.+|+.|+.++..-..+|+........++.....-..+
T Consensus 120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~ 180 (343)
T PRK09039 120 ELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRR 180 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556667777777777777777777777766666666665555554444444333
No 29
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.82 E-value=4 Score=42.94 Aligned_cols=105 Identities=12% Similarity=0.199 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSE----SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laE----sLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs 534 (570)
.+.+..+++.|+.|..+.-.++..++..++..+ .+......+...++.......+|+.++++|+.+|..-...++.
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~ 252 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIED 252 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344556666666666666665555553333222 2334455556666666666666666666666666555444444
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 008304 535 FRNEYANVRLECNAADERAKILASEVIGL 563 (570)
Q Consensus 535 ~~~ErdaArle~~aA~ERak~LAaEVV~L 563 (570)
+......++.+...+...-..+..+..-+
T Consensus 253 ~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 253 PSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444444444444
No 30
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.62 E-value=6.7 Score=39.10 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhh
Q 008304 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK 566 (570)
Q Consensus 511 v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk 566 (570)
..++...+++|+.+...+..+-+.+..+++.+......-.+-.+.-..|+..|.++
T Consensus 56 ~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~e 111 (246)
T PF00769_consen 56 RQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEE 111 (246)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444433
No 31
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.52 E-value=14 Score=34.12 Aligned_cols=70 Identities=19% Similarity=0.308 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl 529 (570)
.++..+++++..|.+|-..+++-+.....-.+.+-.+...+......-...+..+++..+.+..|++.-.
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666655555555544444444444444444443333334444444444444444433333
No 32
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.47 E-value=3.2 Score=42.62 Aligned_cols=76 Identities=22% Similarity=0.320 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~ 536 (570)
+=..|.+.+++|-.|+..|.+.+...++-.+.|-.+-...-+.||.....+.+++++.+.+..+++.-...|+.++
T Consensus 58 Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 58 EEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777778888888888888777777787777788888888888888888887777777666665555544
No 33
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.23 E-value=14 Score=35.41 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008304 461 DFAALEQHIEDLTQEKF-ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKf-aLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LE 533 (570)
+-+.|++.|+++-+... .-.......+.-.+.+...+..|..+..++...+.+++..++.++++++.....|+
T Consensus 35 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 35 ENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666544100 01112222222333334444444444444444445444444444444444444433
No 34
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.08 E-value=6.5 Score=46.39 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=12.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 008304 537 NEYANVRLECNAADERAKILASEVIGLE 564 (570)
Q Consensus 537 ~ErdaArle~~aA~ERak~LAaEVV~LE 564 (570)
.+...++.+....+++.+.+..++..++
T Consensus 877 ~~l~~~~~~~~~l~~~l~~~~~~~~~~~ 904 (1163)
T COG1196 877 DELKELEEEKEELEEELRELESELAELK 904 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444
No 35
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.99 E-value=4 Score=42.87 Aligned_cols=87 Identities=17% Similarity=0.275 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhH-------------------HHHHHHHHHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR-------------------SVVNQLKSEMEKL 521 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~-------------------~~v~qLk~dmErL 521 (570)
++..|.|.+.|..++.-.|+..+..-+.--..|-.++-.|-.+.+.+. ..+..++.+.++|
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL 145 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL 145 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666555555555555555555555433 3457788899999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhh
Q 008304 522 QEEIKVQLVELESFRNEYANVRLECN 547 (570)
Q Consensus 522 q~Ei~aQl~~LEs~~~ErdaArle~~ 547 (570)
+.++++.+-+.+-+..|||+++--|.
T Consensus 146 e~d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 146 ERDLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986654
No 36
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.91 E-value=4.7 Score=33.78 Aligned_cols=65 Identities=25% Similarity=0.233 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl 529 (570)
|++.|.-|-..=..+.|-++........|..|++....+-=.-...+..|+.+++.|+.|++.++
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444222234556677777888888888888887777777788888888888888765443
No 37
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=89.48 E-value=2.9 Score=37.12 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=53.1
Q ss_pred chhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008304 458 HNEDFAALEQHIEDLTQEKFA-----------LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~EKfa-----------LqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~ 526 (570)
+.-||++||.||..+|-=++. +.+-+.=+|=..|=|-.-.+.|.+........+.++..++++|+..++
T Consensus 25 ~~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~ 104 (118)
T PF13815_consen 25 RELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLK 104 (118)
T ss_pred hccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999977643321 233444455556666666666666666666666677777777777776
Q ss_pred HHHHHhhhhHHH
Q 008304 527 VQLVELESFRNE 538 (570)
Q Consensus 527 aQl~~LEs~~~E 538 (570)
.+..++..++.|
T Consensus 105 ~~~~~~k~lk~E 116 (118)
T PF13815_consen 105 KQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHh
Confidence 666666666655
No 38
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.34 E-value=16 Score=36.54 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASR 487 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~ 487 (570)
+.+.|++-|+.+..+.-.++..++.++
T Consensus 145 ~~~~l~~~i~~~~~~i~~~~~~l~~~~ 171 (423)
T TIGR01843 145 QLELILAQIKQLEAELAGLQAQLQALR 171 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444444333
No 39
>PRK02224 chromosome segregation protein; Provisional
Probab=89.26 E-value=10 Score=42.55 Aligned_cols=104 Identities=17% Similarity=0.165 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008304 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erda 541 (570)
+..|...|+++..++-.|.+.++...+-.+.|-..... -.++.+....++++++.++.+..++......++.+..|...
T Consensus 470 ~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~-~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~ 548 (880)
T PRK02224 470 IEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA-EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAE 548 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34567777777777777777777666655544443222 23333333344444444444444444444444455555555
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhh
Q 008304 542 VRLECNAADERAKILASEVIGLEEK 566 (570)
Q Consensus 542 Arle~~aA~ERak~LAaEVV~LEEk 566 (570)
.+.++..+..+++.+=.+.-.++++
T Consensus 549 l~~~~~~~~~~~~~~~~~~~~~~~~ 573 (880)
T PRK02224 549 LEAEAEEKREAAAEAEEEAEEAREE 573 (880)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5555544444444444444443333
No 40
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.07 E-value=8 Score=42.17 Aligned_cols=67 Identities=30% Similarity=0.358 Sum_probs=59.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhc
Q 008304 503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRS 569 (570)
Q Consensus 503 ryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~lq 569 (570)
........+.+.+..|+....|+..-...+++|+.|..+.+.+.....+|-....++|..|+.++.+
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~ 348 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNK 348 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Confidence 3666777788888888888899999999999999999999999999999999999999999998754
No 41
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.06 E-value=3.7 Score=40.32 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDL----TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (570)
Q Consensus 459 ~ddFAaLqQhIeDL----T~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~a 527 (570)
..+++.|++-++++ .+++-.|+..++.+......|..||+.|....-.....+..|+.+++.++++++-
T Consensus 99 e~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666555555 4556777777777777777788888877666666666666666666666555443
No 42
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.05 E-value=5.6 Score=38.89 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304 479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (570)
Q Consensus 479 LqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr 543 (570)
..+.=.++++..+.+++|-..|.++|-+...++..|+...++|+..+..|..+++.+..+.+...
T Consensus 33 ~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 33 WVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677888999999999999999999999999999999999999999999998886555443
No 43
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=89.02 E-value=2.4 Score=48.16 Aligned_cols=79 Identities=16% Similarity=0.297 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHH
Q 008304 475 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 553 (570)
Q Consensus 475 EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERa 553 (570)
+-|+..|.|..+.++-+++..|--.|--+--+..+.++++.-++|.|+++|.....+|++++.|..+||-...+++||-
T Consensus 73 ~~~s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 73 SGYSIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 4566677777777777777777766766666677788888888999999998888999999999999999888888763
No 44
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=88.61 E-value=4.5 Score=34.18 Aligned_cols=47 Identities=23% Similarity=0.234 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 485 ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (570)
Q Consensus 485 ks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~ 531 (570)
++-+..+.|-.||+.|-.+.++....-.+|+.+.++|++|..+...-
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555554455555555555555444444333
No 45
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=88.55 E-value=9.6 Score=44.15 Aligned_cols=106 Identities=22% Similarity=0.246 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 544 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArl 544 (570)
+.+-+..++-|-.+|-++|+.--.+...|-.+....-..++.....+..+.++..-|+-|+.+..-+||--..||+--+.
T Consensus 97 ~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~ 176 (769)
T PF05911_consen 97 LSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRR 176 (769)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33334444445555555555555555555555555555666666666666666666777777777777777788887777
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhcC
Q 008304 545 ECNAADERAKILASEVIGLEEKVRSL 570 (570)
Q Consensus 545 e~~aA~ERak~LAaEVV~LEEk~lqL 570 (570)
.+.+|.-+=.-=.--|--||..|.||
T Consensus 177 ~ae~a~kqhle~vkkiakLEaEC~rL 202 (769)
T PF05911_consen 177 AAEAASKQHLESVKKIAKLEAECQRL 202 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777654443344455799999876
No 46
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.48 E-value=14 Score=41.64 Aligned_cols=61 Identities=26% Similarity=0.413 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSE--------------SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 525 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laE--------------sLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei 525 (570)
|++-.+.|-++.-.|++.|..+++-++ .|..|++.|..++.++...+.+|..++..|.+..
T Consensus 162 Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 162 LEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444556666665555544 4455666677777777777777777776665554
No 47
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=88.38 E-value=12 Score=30.39 Aligned_cols=89 Identities=24% Similarity=0.290 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASR-----ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~-----~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~ 535 (570)
.+...++.|+.|..++-.++..+.... ........--..|...-.++...+..++.+++.+++++......++.+
T Consensus 13 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~ 92 (123)
T PF02050_consen 13 ELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKL 92 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666665555554444 344444444455555555555555556666666665555555555555
Q ss_pred HHHHHHHHhhhhhH
Q 008304 536 RNEYANVRLECNAA 549 (570)
Q Consensus 536 ~~ErdaArle~~aA 549 (570)
.-=+++.+.....+
T Consensus 93 e~L~e~~~~~~~~~ 106 (123)
T PF02050_consen 93 EKLKERRREEYQQE 106 (123)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 54444444433333
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=88.21 E-value=11 Score=46.38 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=53.3
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 008304 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLE 564 (570)
Q Consensus 492 sLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LE 564 (570)
.+..+-+.|..+..++...+.+++.+++.++.++.....+++.++.++...+.+...+..+...+-..+..||
T Consensus 352 ~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le 424 (1486)
T PRK04863 352 RYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALE 424 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777788888888888888877777777777777777777777777777776666665554
No 49
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.12 E-value=7.7 Score=46.31 Aligned_cols=60 Identities=8% Similarity=0.227 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhc
Q 008304 508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRS 569 (570)
Q Consensus 508 ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~lq 569 (570)
...+.+++.+++.|..++.. +....+..|+...+.++++..-..-.+.-++=.||+++.+
T Consensus 1027 ~~~l~el~~eI~~l~~~~~~--~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~ 1086 (1311)
T TIGR00606 1027 ENELKEVEEELKQHLKEMGQ--MQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKH 1086 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444332 1335566666666666666666555666666666666654
No 50
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=88.01 E-value=5.1 Score=41.44 Aligned_cols=95 Identities=26% Similarity=0.306 Sum_probs=66.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (570)
Q Consensus 456 ~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~ 535 (570)
..|.+..+-||+.|.|||+|---|+-.-+.-|++++.|-.+|-+| ...++.|..++..|.+.-+-+-+..|.-
T Consensus 86 DrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el-------~~~le~~~~~l~~~~~~~~~~~~v~eee 158 (292)
T KOG4005|consen 86 DRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHEL-------DSELELLRQELAELKQQQQHNTRVIEEE 158 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHhhHHHHHHhhHHHhhh
Confidence 356778899999999999999999888888888888887777655 4556667777766665544443333221
Q ss_pred ---------------HHHHHHHHhhhhhHHHHHHHHH
Q 008304 536 ---------------RNEYANVRLECNAADERAKILA 557 (570)
Q Consensus 536 ---------------~~ErdaArle~~aA~ERak~LA 557 (570)
+++-.+|...+..-.|.|+.+-
T Consensus 159 ~~~~gaev~~v~G~~~a~saaa~~~ap~Qqeqa~~~~ 195 (292)
T KOG4005|consen 159 NASAGAEVWYVTGGHTAVSAAAGGAAPEQQEQALTLE 195 (292)
T ss_pred hhccCCceEEecCCchhHhHhhcccChhhHhhhhccc
Confidence 2556667777777777766553
No 51
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=87.64 E-value=10 Score=47.82 Aligned_cols=84 Identities=21% Similarity=0.312 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHhhhhhHHHHHHHH
Q 008304 484 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES-------FRNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 484 eks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs-------~~~ErdaArle~~aA~ERak~L 556 (570)
+.+.++-+.|..+...|-..+..-...+.++++....|+.+.+...-++.. +...|+.++++.+++..+-+-|
T Consensus 890 ~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l 969 (1930)
T KOG0161|consen 890 AEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNL 969 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555444444333333333322 3344446666666666666666
Q ss_pred HHhhhhhhhhh
Q 008304 557 ASEVIGLEEKV 567 (570)
Q Consensus 557 AaEVV~LEEk~ 567 (570)
=-|+.+|||++
T Consensus 970 ~~e~~~~~e~~ 980 (1930)
T KOG0161|consen 970 EEEINSLDENI 980 (1930)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 52
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.55 E-value=5.3 Score=37.92 Aligned_cols=89 Identities=20% Similarity=0.256 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 544 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArl 544 (570)
|+|-|-++|.+--.|...+.........|..++..|..+..+....|.++...++.|+.|+.+-.+.+..+.......+.
T Consensus 93 l~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 93 LAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778887777888888888888888888888888888888888888888888888888888888877777777777
Q ss_pred hhhhHHHHH
Q 008304 545 ECNAADERA 553 (570)
Q Consensus 545 e~~aA~ERa 553 (570)
|-..=-+|=
T Consensus 173 En~~Lv~Rw 181 (194)
T PF08614_consen 173 ENRELVERW 181 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766666653
No 53
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=87.30 E-value=13 Score=44.68 Aligned_cols=70 Identities=24% Similarity=0.319 Sum_probs=55.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--------------HHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 008304 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR--------------NEYANVRLECNAADERAKILASEVIGLE 564 (570)
Q Consensus 499 ALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~--------------~ErdaArle~~aA~ERak~LAaEVV~LE 564 (570)
...+.||.|...+.-.++.+..|++.+.-+...++.++ .|.++---+|..|.++.+.+..||..||
T Consensus 278 ~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~ 357 (1074)
T KOG0250|consen 278 EVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLK 357 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999998888888888888887777766666555 5666666788899999999999999999
Q ss_pred hhhh
Q 008304 565 EKVR 568 (570)
Q Consensus 565 Ek~l 568 (570)
+++.
T Consensus 358 ~~~~ 361 (1074)
T KOG0250|consen 358 EEIR 361 (1074)
T ss_pred HHHH
Confidence 8764
No 54
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=87.26 E-value=15 Score=29.97 Aligned_cols=75 Identities=21% Similarity=0.297 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304 482 SLEASRALSESLAAENSSLTDSYNQQR-----SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 482 aLeks~~laEsLA~ENsALTdryNqQ~-----~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~L 556 (570)
.++....-.+.|-.+-..+...+.... ..+.....-+..|...|..+...++.+..|+..++..+.+|.-+.+.+
T Consensus 13 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~ 92 (123)
T PF02050_consen 13 ELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKL 92 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555555555555 677777788888888888888888888899999988888888777765
No 55
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.24 E-value=22 Score=32.06 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhhhhhhhhh
Q 008304 550 DERAKILASEVIGLEEKVR 568 (570)
Q Consensus 550 ~ERak~LAaEVV~LEEk~l 568 (570)
.++=..|-.|+-.++.||-
T Consensus 97 ~~qk~~le~e~~~~~~r~~ 115 (132)
T PF07926_consen 97 EEQKEQLEKELSELEQRIE 115 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666667777776664
No 56
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=86.91 E-value=1.9 Score=37.92 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHH
Q 008304 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 553 (570)
Q Consensus 510 ~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERa 553 (570)
.|++|..++..|...+..-..+...++..-++|+.|+..|.+|-
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555544444566667777788888888888874
No 57
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=86.86 E-value=2.9 Score=34.46 Aligned_cols=45 Identities=22% Similarity=0.360 Sum_probs=26.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHH
Q 008304 503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 554 (570)
Q Consensus 503 ryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak 554 (570)
+.++....|.+|..++.+|.++|.+- +.|..+|+.|+..|.+|--
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~l-------r~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNAL-------RADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 34555566666777777777655444 4455555556666666643
No 58
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.61 E-value=21 Score=32.81 Aligned_cols=97 Identities=25% Similarity=0.302 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Er 539 (570)
.-+..|+..|.-+.-|.-+|+..+++-.+-=+.|++|--.||..-.+. ..+..+++.|+ ..++.+...|
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~-------~el~~l~~ry 84 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELE-------QELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------HHHHHHHHHH
Confidence 345666777777777777777777776666666666666666554322 22222223333 2233444667
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 540 ANVRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 540 daArle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
+++-.=+.+-.|+..-|=++|..|-+=+
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777776665433
No 59
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.35 E-value=12 Score=44.88 Aligned_cols=41 Identities=12% Similarity=0.078 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008304 496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (570)
Q Consensus 496 ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~ 536 (570)
+-+.|...-++++..+..++.+++-|..++..-...++.++
T Consensus 889 ~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1311)
T TIGR00606 889 QLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELI 929 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555544444444444
No 60
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.35 E-value=12 Score=38.85 Aligned_cols=101 Identities=19% Similarity=0.273 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304 468 HIEDLTQEKFALQRSLEASRALSESLAA----ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (570)
Q Consensus 468 hIeDLT~EKfaLqRaLeks~~laEsLA~----ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr 543 (570)
.+.+|-+.+-.|+..+..-+++.+.+.. |=..+-.+.=++-..+...+.++++++++++.-...++..+.+....+
T Consensus 173 ~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~ 252 (312)
T smart00787 173 IKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN 252 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555432 333333444444445555555566666665555555555555555555
Q ss_pred hhhhhHHHH---HH-HHHHhhhhhhhhhh
Q 008304 544 LECNAADER---AK-ILASEVIGLEEKVR 568 (570)
Q Consensus 544 le~~aA~ER---ak-~LAaEVV~LEEk~l 568 (570)
.+..+|.-. .| --..||..|.+++.
T Consensus 253 ~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~ 281 (312)
T smart00787 253 TEIAEAEKKLEQCRGFTFKEIEKLKEQLK 281 (312)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 555544431 11 23456666666554
No 61
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=86.33 E-value=27 Score=35.41 Aligned_cols=113 Identities=23% Similarity=0.342 Sum_probs=74.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------Hh----hhHHHHHHHHhHHHHH----HHHHH
Q 008304 456 TKHNEDFAALEQHIEDLTQEKFA----LQRSLEASRALSESLA------AE----NSSLTDSYNQQRSVVN----QLKSE 517 (570)
Q Consensus 456 ~~~~ddFAaLqQhIeDLT~EKfa----LqRaLeks~~laEsLA------~E----NsALTdryNqQ~~~v~----qLk~d 517 (570)
++.+++|..+.++|+.|.+-==- .+|-..+..++.+.++ .. ...|.+-++.-++.|. ++.+.
T Consensus 50 ~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~ 129 (243)
T cd07666 50 KNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKR 129 (243)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999988653222 3444445555544432 22 4448999999999988 66665
Q ss_pred HHHHHHH----HHHHHHHhhhhH---HHHHHHHhhhhhHH--------HHHHHHHHhhhhhhhhhhc
Q 008304 518 MEKLQEE----IKVQLVELESFR---NEYANVRLECNAAD--------ERAKILASEVIGLEEKVRS 569 (570)
Q Consensus 518 mErLq~E----i~aQl~~LEs~~---~ErdaArle~~aA~--------ERak~LAaEVV~LEEk~lq 569 (570)
++.|... |+.+..-.++++ .+|+.+|++..... +| ..+..||=.||+|+.+
T Consensus 130 ~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr-~~~~~ev~~~e~kve~ 195 (243)
T cd07666 130 MKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADR-DLLKEEIEKLEDKVEC 195 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHH
Confidence 5555443 444444444444 78888888776543 35 4677788889998753
No 62
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.05 E-value=15 Score=44.10 Aligned_cols=108 Identities=17% Similarity=0.258 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
+...|+..|+.+-++=-+--+.+++.....|.|--|.++|.+-----...+.++...++-|..|+..+.+.+..+..+++
T Consensus 788 rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~ 867 (1174)
T KOG0933|consen 788 RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVK 867 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence 33444444444444444444555555666666666666666544444455666666666666666667777777777777
Q ss_pred HHHhhhhhHHHHHHHHHHhh---hhhhhhhh
Q 008304 541 NVRLECNAADERAKILASEV---IGLEEKVR 568 (570)
Q Consensus 541 aArle~~aA~ERak~LAaEV---V~LEEk~l 568 (570)
.++.+.+.-..+-+..--|+ +-..++|+
T Consensus 868 ~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~ 898 (1174)
T KOG0933|consen 868 KAQAELKDQKAKQRDIDTEISGLLTSQEKCL 898 (1174)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhHHHHHH
Confidence 77776666655555554444 44444444
No 63
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.67 E-value=16 Score=38.46 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=18.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008304 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528 (570)
Q Consensus 500 LTdryNqQ~~~v~qLk~dmErLq~Ei~aQ 528 (570)
+..+|-..--.|-+|+.+++.|+++++..
T Consensus 266 l~~~y~~~hP~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 266 LRLRYTDKHPDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred HHHHhcccChHHHHHHHHHHHHHHHHHhh
Confidence 33455555566667777777777776554
No 64
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=85.55 E-value=34 Score=32.57 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAA 495 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ 495 (570)
..|+|+|.||-++--.+.++|++.......|..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~ 58 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLER 58 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899988877766666666665555444443
No 65
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=85.53 E-value=8.7 Score=39.49 Aligned_cols=100 Identities=15% Similarity=0.194 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaA 542 (570)
.=+++.++++.++--..+..|+..++....|-++-.+|...|.+......+|+.+++..+.-+..-.--+.+|..|+.+=
T Consensus 217 ~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW 296 (344)
T PF12777_consen 217 EPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERW 296 (344)
T ss_dssp CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhH
Confidence 34678889998888889999999999999999999999999999999999999999999988888778889999999998
Q ss_pred HhhhhhHHHHHHHHHHhhhh
Q 008304 543 RLECNAADERAKILASEVIG 562 (570)
Q Consensus 543 rle~~aA~ERak~LAaEVV~ 562 (570)
......-.++...|--.++.
T Consensus 297 ~~~~~~l~~~~~~l~GD~ll 316 (344)
T PF12777_consen 297 SEQIEELEEQLKNLVGDSLL 316 (344)
T ss_dssp HCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHH
Confidence 88888888888877766654
No 66
>PRK15396 murein lipoprotein; Provisional
Probab=84.81 E-value=3 Score=35.99 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHH
Q 008304 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555 (570)
Q Consensus 510 ~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~ 555 (570)
.|++|..++..|..++..-..+...++.+..+|+.|+..|.+|---
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445555556666666666666666433
No 67
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.80 E-value=10 Score=32.12 Aligned_cols=59 Identities=27% Similarity=0.300 Sum_probs=28.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304 498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 498 sALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~L 556 (570)
+.|-.+|++--..+..|+.++++|+++-..-..+.+.++.|-...+.+.++..+|-+.|
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555554444444444555555555555555555554443
No 68
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.51 E-value=35 Score=31.77 Aligned_cols=104 Identities=21% Similarity=0.295 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
++..+++-|..|+..--.|.-.|++.+. .|..-...+-.. ......+.+|.+.|..|++|+..--..|.....-..
T Consensus 29 ~~~~~E~EI~sL~~K~~~lE~eld~~~~---~l~~~k~~lee~-~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 29 ENEQKEQEITSLQKKNQQLEEELDKLEE---QLKEAKEKLEES-EKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhH-HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544444444443332 222222222222 333345567888888888887777777777777777
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304 541 NVRLECNAADERAKILASEVIGLEEKVR 568 (570)
Q Consensus 541 aArle~~aA~ERak~LAaEVV~LEEk~l 568 (570)
-+-..+.+..-+.+.|=.+.-.+|.|+-
T Consensus 105 e~d~~ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 105 EADVKAEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred HHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777777777777777777777764
No 69
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=84.49 E-value=14 Score=33.26 Aligned_cols=82 Identities=27% Similarity=0.343 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHhhhhhHHHH
Q 008304 479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE------YANVRLECNAADER 552 (570)
Q Consensus 479 LqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~E------rdaArle~~aA~ER 552 (570)
+...++...+-++.||..|-++-.++.+++..+.++..++..|+.+...-...+..+..- +...+..+..|+|-
T Consensus 32 ~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eee 111 (150)
T PF07200_consen 32 LQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEAEEE 111 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 333444444455666777766666666666666666666666666655544444444322 23344555666666
Q ss_pred HHHHHHhh
Q 008304 553 AKILASEV 560 (570)
Q Consensus 553 ak~LAaEV 560 (570)
+..||-+.
T Consensus 112 Se~lae~f 119 (150)
T PF07200_consen 112 SEELAEEF 119 (150)
T ss_dssp HHHHC-S-
T ss_pred HHHHHHHH
Confidence 66665544
No 70
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.17 E-value=6.8 Score=34.16 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY 504 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdry 504 (570)
|-++-||=.||+|.+++-.|+...+-++.--|.|..||+.|...-
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~ 62 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888887777777777777777776554433
No 71
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=84.14 E-value=21 Score=34.94 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=40.9
Q ss_pred HHhhhHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhh
Q 008304 494 AAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 548 (570)
Q Consensus 494 A~ENsALTdryNqQ--~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~a 548 (570)
--+|=+|+.+|-.. ..-..+|...+++|+.+++.+.-+++.+-.+|-..|+++..
T Consensus 119 R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~ 175 (221)
T PF05700_consen 119 RLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGE 175 (221)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34555677766333 33457788888899999999999999999988888887654
No 72
>PRK10698 phage shock protein PspA; Provisional
Probab=83.97 E-value=44 Score=33.00 Aligned_cols=24 Identities=4% Similarity=0.098 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 462 FAALEQHIEDLTQEKFALQRSLEA 485 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaLqRaLek 485 (570)
..+|.|.|.||-..--.+.++|++
T Consensus 26 ~k~l~q~i~em~~~l~~~r~alA~ 49 (222)
T PRK10698 26 QKLVRLMIQEMEDTLVEVRSTSAR 49 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777776655555444444
No 73
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=83.58 E-value=16 Score=43.60 Aligned_cols=38 Identities=26% Similarity=0.443 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHH
Q 008304 513 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD 550 (570)
Q Consensus 513 qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ 550 (570)
+++.++.+.+.+++.....++.++.++.+.+.++..+.
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 676 (1201)
T PF12128_consen 639 ELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAK 676 (1201)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555555554443
No 74
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=83.43 E-value=29 Score=31.18 Aligned_cols=84 Identities=20% Similarity=0.214 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr 543 (570)
..+...++|..+.-+++=.+.+++-+++.-..|-+.....+-+--..+.+++.+|+.|+.++..-...+.. +.|||+.-
T Consensus 43 ~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~-k~eyd~La 121 (139)
T PF05615_consen 43 ESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQN-KEEYDALA 121 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34556677888888888888888888887777776666666666677778888888888776655444433 34777765
Q ss_pred hhhhh
Q 008304 544 LECNA 548 (570)
Q Consensus 544 le~~a 548 (570)
-.++.
T Consensus 122 ~~I~~ 126 (139)
T PF05615_consen 122 KKINS 126 (139)
T ss_pred HHHhc
Confidence 55544
No 75
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=83.36 E-value=15 Score=43.57 Aligned_cols=106 Identities=22% Similarity=0.279 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhHHHH--------------HHHHhHHHHHHHHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEA-------SRALSESLAAENSSLTD--------------SYNQQRSVVNQLKSEME 519 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLek-------s~~laEsLA~ENsALTd--------------ryNqQ~~~v~qLk~dmE 519 (570)
.|..|-..+.+|-+|+..|+|-... ++.-.+.+..+|..|-| ++-.|...+++|+.+++
T Consensus 425 ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~ 504 (980)
T KOG0980|consen 425 RYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELA 504 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445555666677777777765432 22222234444443332 45567778888888888
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHh-hhhhhhh
Q 008304 520 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE-VIGLEEK 566 (570)
Q Consensus 520 rLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaE-VV~LEEk 566 (570)
.|+.|++.+...++....++.+--.+.-+.-+.=-.+++| |+.+||+
T Consensus 505 ~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~ 552 (980)
T KOG0980|consen 505 LLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEER 552 (980)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888777766655555554444444444 4445444
No 76
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.15 E-value=8.5 Score=33.75 Aligned_cols=60 Identities=23% Similarity=0.372 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmE 519 (570)
|-++-||--|++|-+++..|....+.++.--+.|..||..|...-|.=-..+..|=..|+
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456777778888888888888777777777777777777766665555555555544443
No 77
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=83.07 E-value=26 Score=30.52 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304 480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE---EIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 480 qRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~---Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~L 556 (570)
+-.|+....-..-|..-|.+...+|..-+..++.|...+++|.+ +++.++-.+..+-......-.-+..-|+.++.
T Consensus 13 ~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~- 91 (99)
T PF10046_consen 13 ESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKE- 91 (99)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34567777777888889999999999999999999988877765 44555555555555554444444444555543
Q ss_pred HHhhhhhhhhhhc
Q 008304 557 ASEVIGLEEKVRS 569 (570)
Q Consensus 557 AaEVV~LEEk~lq 569 (570)
||.|+.+
T Consensus 92 ------LE~k~k~ 98 (99)
T PF10046_consen 92 ------LESKFKK 98 (99)
T ss_pred ------HHHHhhc
Confidence 5555544
No 78
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=82.63 E-value=23 Score=34.06 Aligned_cols=89 Identities=20% Similarity=0.186 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008304 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erda 541 (570)
...+.+++..|..++....+.|.++++.=+.+..|-+.+...|+.-......=+.+++.+++.+.....+.+..+.||..
T Consensus 107 rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~~~Y~~ 186 (251)
T cd07653 107 RKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAKNEYAA 186 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666667777777777777777777777777777766543333333467778888888888888888899988
Q ss_pred HHhhhhhHH
Q 008304 542 VRLECNAAD 550 (570)
Q Consensus 542 Arle~~aA~ 550 (570)
+...+|+..
T Consensus 187 ~l~~~N~~~ 195 (251)
T cd07653 187 QLQKFNKEQ 195 (251)
T ss_pred HHHHHHHHH
Confidence 888887774
No 79
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.62 E-value=55 Score=33.45 Aligned_cols=83 Identities=19% Similarity=0.279 Sum_probs=52.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL--TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsAL--TdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~ 535 (570)
-++++.+|++-++||-.++..++-.++..++=...+-..-.++ .+.||+....+..+++....|+.|+.--+-.++.+
T Consensus 43 ~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l 122 (239)
T COG1579 43 LNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKL 122 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888999999999999998877776654333322222222 35677777766666666666666655555555555
Q ss_pred HHHHH
Q 008304 536 RNEYA 540 (570)
Q Consensus 536 ~~Erd 540 (570)
..|..
T Consensus 123 ~~~i~ 127 (239)
T COG1579 123 EKEIE 127 (239)
T ss_pred HHHHH
Confidence 44433
No 80
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.52 E-value=25 Score=42.38 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhh
Q 008304 469 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 548 (570)
Q Consensus 469 IeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~a 548 (570)
|+++-++=-..+|++-..++-..+|. ..+.+..+.++..+++|+.+++.+.+.+++....++.-.-||.+.+++|.+
T Consensus 750 v~e~~~~Ike~~~~~k~~~~~i~~lE---~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~ 826 (1174)
T KOG0933|consen 750 VEESEQQIKEKERALKKCEDKISTLE---KKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEE 826 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444443333332 245677778888888888777777777777666666666666666666654
Q ss_pred H
Q 008304 549 A 549 (570)
Q Consensus 549 A 549 (570)
-
T Consensus 827 l 827 (1174)
T KOG0933|consen 827 L 827 (1174)
T ss_pred H
Confidence 3
No 81
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=82.21 E-value=27 Score=39.53 Aligned_cols=18 Identities=33% Similarity=0.721 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008304 512 NQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 512 ~qLk~dmErLq~Ei~aQl 529 (570)
..|+.+++.|..++++|.
T Consensus 90 ~~L~kElE~L~~qlqaqv 107 (617)
T PF15070_consen 90 EHLRKELESLEEQLQAQV 107 (617)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 82
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=82.20 E-value=14 Score=36.08 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr 543 (570)
.++.+++.+...+-.+...|.++++.=+....|.+.+...|..+..-+ -+.++|.++.-+.--..+.+..+.||..+.
T Consensus 103 ~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~--~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v 180 (239)
T cd07647 103 KTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGA--QPKEAEKLKKKAAQCKTSAEEADSAYKSSI 180 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666677777777777777777777777776655432 245677777666665566666777787776
Q ss_pred hhhhhHHH
Q 008304 544 LECNAADE 551 (570)
Q Consensus 544 le~~aA~E 551 (570)
...+.+..
T Consensus 181 ~~l~~~~~ 188 (239)
T cd07647 181 GCLEDARV 188 (239)
T ss_pred HHHHHHHH
Confidence 66665543
No 83
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=82.17 E-value=9.8 Score=36.95 Aligned_cols=71 Identities=23% Similarity=0.385 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304 477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 477 faLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~L 556 (570)
+++++.|.......+.|..||++|.+.-.+....+.+|+.+++.|+ ..+..+..+|... -..++||+.|
T Consensus 86 I~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~-------~~~~~~~eDY~~L----~~Im~RARkl 154 (161)
T TIGR02894 86 ISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLR-------QRLSTIEEDYQTL----IDIMDRARKL 154 (161)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----HHHHHHHHHH
Confidence 4566677777777888999999987765555555555555555554 5566677777654 4688999998
Q ss_pred HH
Q 008304 557 AS 558 (570)
Q Consensus 557 Aa 558 (570)
+.
T Consensus 155 ~~ 156 (161)
T TIGR02894 155 AV 156 (161)
T ss_pred Hh
Confidence 73
No 84
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=82.04 E-value=29 Score=42.16 Aligned_cols=13 Identities=23% Similarity=0.199 Sum_probs=6.9
Q ss_pred CcccCCccccccC
Q 008304 317 FKRSEYSGYNFDA 329 (570)
Q Consensus 317 ~~~S~s~~~~~d~ 329 (570)
-...++||+..=.
T Consensus 725 k~~a~~IG~~aR~ 737 (1353)
T TIGR02680 725 KPAAEYIGAAARE 737 (1353)
T ss_pred CcchhHhhHHHHH
Confidence 4446666665433
No 85
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.00 E-value=37 Score=32.12 Aligned_cols=84 Identities=32% Similarity=0.364 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHhhhhHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI---KVQLVELESFRNEY 539 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei---~aQl~~LEs~~~Er 539 (570)
-.|+.-++..-++|..+.+..+-+++.+++|-++-+.||..-|+-...+..|.++.+.|-+++ +.+..+|++...+.
T Consensus 27 ~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~ 106 (140)
T PF10473_consen 27 ESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSL 106 (140)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344444455555666677777778888888888888888888888888887777766665443 45567777777666
Q ss_pred HHHHhhh
Q 008304 540 ANVRLEC 546 (570)
Q Consensus 540 daArle~ 546 (570)
.+...+.
T Consensus 107 ~~~l~~~ 113 (140)
T PF10473_consen 107 ENLLQEK 113 (140)
T ss_pred HHHHHHH
Confidence 6555443
No 86
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=81.89 E-value=8.5 Score=40.41 Aligned_cols=60 Identities=28% Similarity=0.427 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq 522 (570)
+-||+.+..++.|+-.|+.-|..+++.=.+|+.|...|-++|=+-.+.+.+-++++..|+
T Consensus 244 vdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 244 VDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444455555555555555555555555555555555555554444444444444443
No 87
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=81.70 E-value=26 Score=35.01 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 008304 468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN 547 (570)
Q Consensus 468 hIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~ 547 (570)
-...+-+|+..|.+--..+.+..+.|..+.......=.+....+.++..++.+|..+++....+.+.++.+.-.||-.-.
T Consensus 41 k~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 41 KLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEE 120 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444334444566666666677777766666666677766666666655
Q ss_pred hHHHHH
Q 008304 548 AADERA 553 (570)
Q Consensus 548 aA~ERa 553 (570)
.|.++.
T Consensus 121 ~ak~~L 126 (246)
T PF00769_consen 121 EAKEEL 126 (246)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 88
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=81.43 E-value=16 Score=43.49 Aligned_cols=67 Identities=15% Similarity=0.270 Sum_probs=37.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhh-hHHHHHHHHHHhhhhhh
Q 008304 498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN-AADERAKILASEVIGLE 564 (570)
Q Consensus 498 sALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~-aA~ERak~LAaEVV~LE 564 (570)
.++...|+++...+.+++-.+++.+.+++....+..+++.+...+..+.. .+.++-..+..++..|.
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 631 KQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677677666666666666666666666666655555544443 33333444444444444
No 89
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=81.36 E-value=40 Score=30.22 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHH-------------HHHHHHHHHHHHHHHHHHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS-------------VVNQLKSEMEKLQEEIKVQLV 530 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~-------------~v~qLk~dmErLq~Ei~aQl~ 530 (570)
+|+.+++=..++.-.....|++++.-.+.....-..|.+..++-.. .+.....=+.+|.+.|..|.-
T Consensus 6 rL~~vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~ 85 (147)
T PRK05689 6 ALATLLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQ 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777776666666666667777666665555555555333322211 223344458999999999999
Q ss_pred HhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304 531 ELESFRNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 531 ~LEs~~~ErdaArle~~aA~ERak~L 556 (570)
.|+.+..+.+.+|....+|.-+-|+|
T Consensus 86 ~v~~~~~~ve~~r~~~~~a~~~~k~l 111 (147)
T PRK05689 86 QLTQWTQKVDNARKYWQEKKQRLEAL 111 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998777765
No 90
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.26 E-value=42 Score=30.43 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=7.3
Q ss_pred hhhHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLT 473 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT 473 (570)
.++..++=..|-+|-
T Consensus 30 ~~~~~~vin~i~~Ll 44 (151)
T PF11559_consen 30 EDNDVRVINCIYDLL 44 (151)
T ss_pred cccHHHHHHHHHHHH
Confidence 444455555554443
No 91
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=81.24 E-value=34 Score=33.85 Aligned_cols=37 Identities=27% Similarity=0.447 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA 495 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ 495 (570)
..+...|.+.|++++.||-.|+-.+...+.-++.+-.
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~ 89 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRR 89 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHH
Confidence 4567788899999999998888777766665555433
No 92
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=81.23 E-value=17 Score=43.08 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~ 526 (570)
..+|..-++...|+.|.+.+..+|+..+++-..+.+|-=.+++|.-...+-..+-|+|++|.+
T Consensus 334 ~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~ela 396 (980)
T KOG0980|consen 334 QIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELA 396 (980)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 456777888889999999999999999999999999999999999988888888888887743
No 93
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=81.15 E-value=7.9 Score=31.95 Aligned_cols=48 Identities=29% Similarity=0.373 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 008304 488 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN 547 (570)
Q Consensus 488 ~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~ 547 (570)
+=++.|..+.+.|..+.++....|+.|+.++...++| ++|+|.|+.-.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E------------AaRAN~RlDN~ 50 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEE------------AARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhh
Confidence 3467788888888888888777777777777766666 77777777543
No 94
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=81.11 E-value=25 Score=31.72 Aligned_cols=85 Identities=20% Similarity=0.215 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 008304 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIG 562 (570)
Q Consensus 483 Leks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~ 562 (570)
+...+...+.|-.+|..|.+..=.....+.+++.++..+..+++.-.........+++.+...+.-..=++ .|-..+-.
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~-~L~~~~~e 107 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLA-RLQAAASE 107 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHH-HHHHHHHH
Confidence 45666777888888998888776666666666666666666666555555555555555544444333222 35555666
Q ss_pred hhhhhh
Q 008304 563 LEEKVR 568 (570)
Q Consensus 563 LEEk~l 568 (570)
.|+.|-
T Consensus 108 ~eeeSe 113 (150)
T PF07200_consen 108 AEEESE 113 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 95
>PRK03918 chromosome segregation protein; Provisional
Probab=80.84 E-value=46 Score=37.31 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHhhhhhhhhh
Q 008304 548 AADERAKILASEVIGLEEKV 567 (570)
Q Consensus 548 aA~ERak~LAaEVV~LEEk~ 567 (570)
...++.+.+-.|+..|+++.
T Consensus 256 ~l~~~i~~l~~el~~l~~~l 275 (880)
T PRK03918 256 KLEEKIRELEERIEELKKEI 275 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444544444443
No 96
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=80.66 E-value=26 Score=44.52 Aligned_cols=107 Identities=19% Similarity=0.269 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008304 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erda 541 (570)
+..||.-++.=+++|..=++++-+..+-+..|-.-++.=.+.+=+-...|..|+..+..+++++.-....--.....|-.
T Consensus 1810 ir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~eed~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~ 1889 (1930)
T KOG0161|consen 1810 IRELESELEGEQRRKAEAIKGLRKKERRVKELQFQVEEDKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRK 1889 (1930)
T ss_pred HHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444445555777888888887777777777666666566555555566666666666666665555555666688889
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304 542 VRLECNAADERAKILASEVIGLEEKVR 568 (570)
Q Consensus 542 Arle~~aA~ERak~LAaEVV~LEEk~l 568 (570)
.|-++.+|.||+..+..+|.-|=-|.+
T Consensus 1890 ~q~ele~a~erad~~e~~~~~lr~k~r 1916 (1930)
T KOG0161|consen 1890 LQRELEEAEERADTAESELNKLRSKLR 1916 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988866654
No 97
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=80.66 E-value=12 Score=35.07 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008304 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (570)
Q Consensus 511 v~qLk~dmErLq~Ei~aQl~~LEs~~~Erda 541 (570)
...+++++++|+.|++....++++++...++
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443333
No 98
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=80.57 E-value=24 Score=41.90 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----------HHHHhHHHHHHH----HHHHHHHHHHHH---H
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTD----------SYNQQRSVVNQL----KSEMEKLQEEIK---V 527 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTd----------ryNqQ~~~v~qL----k~dmErLq~Ei~---a 527 (570)
|+-...+||++|.+++-+|--|+.-+|.+-+--..|-. +.-+-.--+.++ .+.++.++++|. -
T Consensus 321 lh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn 400 (1265)
T KOG0976|consen 321 LHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN 400 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455678999999999999999888877654433322 111222222222 233333333332 2
Q ss_pred HHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 528 QLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 528 Ql~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
.+.-++..+..-.+|.-+...|.||+-.|-.+.+-+|-+|
T Consensus 401 ~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~ 440 (1265)
T KOG0976|consen 401 HIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQL 440 (1265)
T ss_pred hhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344566677788999999999999999999999998776
No 99
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=80.33 E-value=22 Score=32.87 Aligned_cols=68 Identities=31% Similarity=0.456 Sum_probs=40.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008304 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 537 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ 537 (570)
..++.++|...|.+|.+|=-.|...+...+ ..|+.=+..+| ..+|...+++|+.|++.-...|+.++.
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~---~eL~~L~~~~t---------~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLE---AELASLSSEPT---------NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366788888889888887666655544333 23333333333 245666666666666666666666654
No 100
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=80.17 E-value=14 Score=42.41 Aligned_cols=62 Identities=26% Similarity=0.310 Sum_probs=37.9
Q ss_pred ccCCCCcccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 008304 439 RLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY 504 (570)
Q Consensus 439 ~~~~~e~~~~~~~~F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdry 504 (570)
+.|.++..+++-..++. ++-..++..|++|.+++..++...+...++-+.+......|.+.+
T Consensus 496 ~~Glp~~ii~~A~~~~~----~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~ 557 (782)
T PRK00409 496 RLGLPENIIEEAKKLIG----EDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKK 557 (782)
T ss_pred HhCcCHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666665555554 344578888999999888877666555555444444444444433
No 101
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.52 E-value=36 Score=42.20 Aligned_cols=11 Identities=9% Similarity=0.344 Sum_probs=5.7
Q ss_pred HHHHHHHhhhh
Q 008304 537 NEYANVRLECN 547 (570)
Q Consensus 537 ~ErdaArle~~ 547 (570)
.+++.|+.=|.
T Consensus 421 ~~Le~~~~~~~ 431 (1486)
T PRK04863 421 QALERAKQLCG 431 (1486)
T ss_pred HHHHHHHHHhC
Confidence 44455555554
No 102
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=79.50 E-value=13 Score=34.96 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=30.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 502 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 502 dryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
........++.+|+.+++..+.|+.+-.-..+.+..|||
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344555677888888888888888888888888888886
No 103
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=79.50 E-value=16 Score=41.93 Aligned_cols=64 Identities=22% Similarity=0.230 Sum_probs=38.4
Q ss_pred ccCCCCcccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008304 439 RLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 506 (570)
Q Consensus 439 ~~~~~e~~~~~~~~F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNq 506 (570)
+.|.++..+++-..++. ++-..++..|++|.++|-.++...+..+++-+.+......|...+.+
T Consensus 491 ~~Glp~~ii~~A~~~~~----~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~ 554 (771)
T TIGR01069 491 RYGIPHFIIEQAKTFYG----EFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEE 554 (771)
T ss_pred HhCcCHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555553 34457888888888888777766666555555555444444444433
No 104
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=79.28 E-value=21 Score=30.40 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq 522 (570)
+.||++.=++-++-=-+.+.+.+.=+.+-+.-..+|.+|..++|...-.|..|-+.+++|-
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677777788888888889999998999999999999999999999999999999999884
No 105
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=79.20 E-value=45 Score=29.46 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEK 520 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmEr 520 (570)
+...|.+.|+.|-.-.-.|.-+..+..++.+.|.+-.....+.++.-...|.+|+.....
T Consensus 14 ~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~ 73 (151)
T cd00179 14 NIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQ 73 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444544444344566666666666666666666666666665443
No 106
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=79.13 E-value=20 Score=41.01 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=8.3
Q ss_pred HHHHHHhhhhhhhhhh
Q 008304 553 AKILASEVIGLEEKVR 568 (570)
Q Consensus 553 ak~LAaEVV~LEEk~l 568 (570)
+..|-+++--|.||-.
T Consensus 589 ~e~L~~aL~amqdk~~ 604 (697)
T PF09726_consen 589 TEVLMSALSAMQDKNQ 604 (697)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555543
No 107
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=79.09 E-value=58 Score=32.65 Aligned_cols=41 Identities=29% Similarity=0.352 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY 504 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdry 504 (570)
-||.-=..|+.|=-.|+|.++..-+.+..|+.|+..|-..+
T Consensus 12 dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~ 52 (193)
T PF14662_consen 12 DLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQL 52 (193)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666666666666666666666666655443
No 108
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=79.00 E-value=59 Score=30.78 Aligned_cols=90 Identities=30% Similarity=0.428 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaA 542 (570)
+-|+.||+ +|.|.|+-+++--+.+..+++.- ..++.-|+.+|+.+-.++..-..+|.+++.|+++.
T Consensus 20 dsle~~v~-------~LEreLe~~q~~~e~~~~daEn~-------k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 20 DSLEDHVE-------SLERELEMSQENKECLILDAENS-------KAEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred hhHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666664 56777777777766666666532 35677788888888888888889999999999999
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhh
Q 008304 543 RLECNAADERAKILASEVIGLEEK 566 (570)
Q Consensus 543 rle~~aA~ERak~LAaEVV~LEEk 566 (570)
-..|..-.+|...|-+=+..++..
T Consensus 86 ~k~lq~~q~kv~eLE~~~~~~~~~ 109 (140)
T PF10473_consen 86 DKELQKKQEKVSELESLNSSLENL 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999988777666543
No 109
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=78.82 E-value=14 Score=42.87 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008304 488 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (570)
Q Consensus 488 ~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~ 536 (570)
.-+..|-.|++.+......-+..+..++..|+++++++.+-...++.+.
T Consensus 114 ~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~ 162 (775)
T PF10174_consen 114 EQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQ 162 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444443333333333333333333333333333333333
No 110
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=78.72 E-value=23 Score=35.28 Aligned_cols=84 Identities=8% Similarity=0.071 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHhhh
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS-----VVNQLKSEMEKLQEEIKVQLVELES 534 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~-----~v~qLk~dmErLq~Ei~aQl~~LEs 534 (570)
+....++.+|+.+..-|......|.++++-=+....|-+.+...+|.+.. ++.-++..+++.++ .++.
T Consensus 100 ~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~K~~~Kl~K~~~-------~~~k 172 (240)
T cd07672 100 LARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQEKLFAKLAQSKQ-------NAED 172 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH-------HHHH
Confidence 34566788899998888899999999999999999998888888876543 23344444444443 4444
Q ss_pred hHHHHHHHHhhhhhHH
Q 008304 535 FRNEYANVRLECNAAD 550 (570)
Q Consensus 535 ~~~ErdaArle~~aA~ 550 (570)
-..+|..+....+...
T Consensus 173 ~~~~Y~~~v~~l~~~~ 188 (240)
T cd07672 173 ADRLYMQNISVLDKIR 188 (240)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556665555555443
No 111
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.70 E-value=53 Score=36.13 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=27.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008304 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 523 (570)
Q Consensus 457 ~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~ 523 (570)
...+....|.+...+|+..|-.+.+.=+..+.+.-.+.++-..|...-.++...+.+|..+++..++
T Consensus 158 ~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~ 224 (420)
T COG4942 158 ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQK 224 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433333333333333333344444444444444444444444333
No 112
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.55 E-value=41 Score=38.70 Aligned_cols=88 Identities=18% Similarity=0.319 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHhhhhhHHHHH
Q 008304 477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV---ELESFRNEYANVRLECNAADERA 553 (570)
Q Consensus 477 faLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~---~LEs~~~ErdaArle~~aA~ERa 553 (570)
-.+.+.+.+-.+.+|.|..||+.|-+.--++...+..|+++++++.+++..-.. +++....+....+.+.....++.
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777778888888888888888878888888888888888777663322 23333445555555566666666
Q ss_pred HHHHHhhhhhh
Q 008304 554 KILASEVIGLE 564 (570)
Q Consensus 554 k~LAaEVV~LE 564 (570)
..|..+.-.|+
T Consensus 498 e~L~~~l~~l~ 508 (652)
T COG2433 498 EELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHH
Confidence 66666555544
No 113
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=78.33 E-value=53 Score=40.11 Aligned_cols=30 Identities=10% Similarity=0.240 Sum_probs=17.3
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHH
Q 008304 451 HGFYSTKHNEDFAALEQHIEDLTQEKFALQ 480 (570)
Q Consensus 451 ~~F~s~~~~ddFAaLqQhIeDLT~EKfaLq 480 (570)
.+|.-+..+.++..|++-|++|.+-+-.|.
T Consensus 211 ~~~l~~l~~~~i~~l~e~~~~~~~~~~~le 240 (1353)
T TIGR02680 211 TEALPPLDDDELTDVADALEQLDEYRDELE 240 (1353)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666667666666666655444443
No 114
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.26 E-value=17 Score=39.80 Aligned_cols=80 Identities=24% Similarity=0.321 Sum_probs=48.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHhHHH---HHHH----HHHHHHHHHHH
Q 008304 457 KHNEDFAALEQHIEDLTQEKFAL----QRSLEASRALSESLAAENSSLTDSYNQQRSV---VNQL----KSEMEKLQEEI 525 (570)
Q Consensus 457 ~~~ddFAaLqQhIeDLT~EKfaL----qRaLeks~~laEsLA~ENsALTdryNqQ~~~---v~qL----k~dmErLq~Ei 525 (570)
....++-+|-..+..|+.+.... -..+..-.++-++++.|-..|+..-=+|..+ +..+ ++.+.+|+.++
T Consensus 140 eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l 219 (420)
T COG4942 140 EDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSEL 219 (420)
T ss_pred hhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666555544 4444555667778888888887554444433 3333 34455666677
Q ss_pred HHHHHHhhhhH
Q 008304 526 KVQLVELESFR 536 (570)
Q Consensus 526 ~aQl~~LEs~~ 536 (570)
..+...++.++
T Consensus 220 ~~~q~~l~eL~ 230 (420)
T COG4942 220 SADQKKLEELR 230 (420)
T ss_pred HHHHHHHHHHH
Confidence 77777777766
No 115
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=77.92 E-value=31 Score=37.14 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=32.0
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 008304 452 GFYSTKHNEDFAALEQHIEDLTQEKFALQR---SLEASRALSESLA 494 (570)
Q Consensus 452 ~F~s~~~~ddFAaLqQhIeDLT~EKfaLqR---aLeks~~laEsLA 494 (570)
.+......++.++|++.|++|..|+-.++- +++.+.++.+.+.
T Consensus 63 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (525)
T TIGR02231 63 ERTSRPDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIR 108 (525)
T ss_pred cCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455678999999999999998888875 5556666666665
No 116
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.89 E-value=37 Score=38.67 Aligned_cols=95 Identities=22% Similarity=0.269 Sum_probs=66.4
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------HHhhhhHHHHHH
Q 008304 473 TQEKFA-LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL----------VELESFRNEYAN 541 (570)
Q Consensus 473 T~EKfa-LqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl----------~~LEs~~~Erda 541 (570)
++||.+ |++.+.+.++.+.++-.-+.++.-.-++-...+.+..+++|.|+.++..-. .+++-...||..
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~ 343 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNK 343 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 445555 999999999999999998888888887777777777777776665543321 233344467777
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 542 VRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 542 Arle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
...+.+.+.----.|-.||-.|+-++
T Consensus 344 l~r~l~~i~~~~d~l~k~vw~~~l~~ 369 (581)
T KOG0995|consen 344 LKRELNKIQSELDRLSKEVWELKLEI 369 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 77777777766667777777776543
No 117
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.77 E-value=20 Score=37.82 Aligned_cols=84 Identities=27% Similarity=0.430 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-------HHHhhhHHHH---------------------HH
Q 008304 460 EDFAALEQHIEDLTQEKF-------ALQRSLEASRALSES-------LAAENSSLTD---------------------SY 504 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKf-------aLqRaLeks~~laEs-------LA~ENsALTd---------------------ry 504 (570)
..+.-||+.+|-|..||- .|.-+|++++.-++. |-.||..|++ .+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv 97 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV 97 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence 345667777888887773 455667776655542 4445554443 34
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHH
Q 008304 505 NQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD 550 (570)
Q Consensus 505 NqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ 550 (570)
|=+-++++..|..+|+|++||+-. +.|..++|+++..++
T Consensus 98 ~~lEgQl~s~Kkqie~Leqelkr~-------KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 98 NFLEGQLNSCKKQIEKLEQELKRC-------KSELERSQQAASSGD 136 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhccCC
Confidence 555666677777777777665544 445555555555443
No 118
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=77.18 E-value=72 Score=31.21 Aligned_cols=87 Identities=16% Similarity=0.204 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Er 539 (570)
=|+..|+--|..|-.-|...-..++..+.+-+.+..+ .+ ...+--..+.+|+..|.+|+++.+.-....++...|.
T Consensus 86 FnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~-~~---~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei 161 (190)
T PF05266_consen 86 FNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK-EA---ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEI 161 (190)
T ss_pred CccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777778888888887777777777777776665 11 2223345666777777777765333332333333444
Q ss_pred HHHHhhhhhHH
Q 008304 540 ANVRLECNAAD 550 (570)
Q Consensus 540 daArle~~aA~ 550 (570)
.+.+..|.+..
T Consensus 162 ~~lks~~~~l~ 172 (190)
T PF05266_consen 162 SRLKSEAEALK 172 (190)
T ss_pred HHHHHHHHHHH
Confidence 44433333333
No 119
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=76.45 E-value=68 Score=34.01 Aligned_cols=15 Identities=20% Similarity=0.541 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 008304 512 NQLKSEMEKLQEEIK 526 (570)
Q Consensus 512 ~qLk~dmErLq~Ei~ 526 (570)
.+++.++.+|+.+|.
T Consensus 239 ~~~~~~i~~l~~~i~ 253 (457)
T TIGR01000 239 ATIQQQIDQLQKSIA 253 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 120
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=76.20 E-value=22 Score=35.76 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=43.2
Q ss_pred HHHHHHHHhhhHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 008304 488 ALSESLAAENSSLTDSYNQQRS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 546 (570)
Q Consensus 488 ~laEsLA~ENsALTdryNqQ~~--~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~ 546 (570)
.++++|-..-..+++.+|.-+| .|.+||..++.++.++++-...+...+.+|+.|...-
T Consensus 9 ~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~R 69 (207)
T PF05546_consen 9 FYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQR 69 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667778889998885 6778888888888777777777777777777666543
No 121
>PRK09793 methyl-accepting protein IV; Provisional
Probab=75.95 E-value=1.1e+02 Score=32.79 Aligned_cols=109 Identities=12% Similarity=0.114 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008304 459 NEDFAALEQHIEDLTQEKFALQR----SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqR----aLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs 534 (570)
.|||..|-..+..|...=-.+.. .-..-...+++++.-++.+..+.++|...+.++...|+++-..+..-....+.
T Consensus 242 ~dE~g~l~~sln~m~~~L~~~i~~i~~~~~~~~~~~~eia~~~~~ls~~~e~qa~~~~~~~~s~~~~~~~~~~~~~~~~~ 321 (533)
T PRK09793 242 RNEITAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVGQNADNARQ 321 (533)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56676666666655543222222 22233345678888889999999999999999999999998776544444444
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 535 FRNEYANVRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 535 ~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
....-..+...+....+....+...+-.|.+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s 354 (533)
T PRK09793 322 ASELAKNAATTAQAGGVQVSTMTHTMQEIATSS 354 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555555555555443
No 122
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=74.70 E-value=0.97 Score=50.33 Aligned_cols=83 Identities=28% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSES----LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEs----LA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Er 539 (570)
-|++.|.+|.+||-.|+-.++..+.-..+ ..+.+..+..+++.-...+.+|+++++++...+.-....++.+..|.
T Consensus 197 el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei 276 (713)
T PF05622_consen 197 ELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEI 276 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888766554443333 23445566677888888888888888777655554444445444444
Q ss_pred HHHHhhh
Q 008304 540 ANVRLEC 546 (570)
Q Consensus 540 daArle~ 546 (570)
+..|++.
T Consensus 277 ~~L~q~~ 283 (713)
T PF05622_consen 277 DELRQEN 283 (713)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 4444443
No 123
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=74.66 E-value=55 Score=37.04 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 008304 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVI 561 (570)
Q Consensus 510 ~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV 561 (570)
.+..|.+++.+|..|+.--...|..++.++|+..+.-+++.-|.+.|=-|+=
T Consensus 163 r~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 163 RIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3334444444455555555566777777777777777777777777766553
No 124
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=74.57 E-value=23 Score=42.56 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhH
Q 008304 481 RSLEASRALSESLAAENSSLTDSYNQQRS-------VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA 549 (570)
Q Consensus 481 RaLeks~~laEsLA~ENsALTdryNqQ~~-------~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA 549 (570)
+.+....+..++|..|-+++-+++.+... .-..|+++.++|+.+|+-...+|+.++.|+.-++......
T Consensus 441 ~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~ 516 (1041)
T KOG0243|consen 441 KEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEE 516 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666665555554444 4449999999999999999999999999998887664433
No 125
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=74.16 E-value=75 Score=30.81 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHH--------HHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhH
Q 008304 478 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK--------SEMEKLQEEIKVQLVELESFRNEYANVRLECNAA 549 (570)
Q Consensus 478 aLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk--------~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA 549 (570)
.++-..++.+..-+..-..-+....+|.+--..++.++ +++++++..++--...+...+.+|..+...++..
T Consensus 104 ~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~ 183 (236)
T cd07651 104 KIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALREL 183 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444443343333 4566777666666677777777887777777766
Q ss_pred HHH
Q 008304 550 DER 552 (570)
Q Consensus 550 ~ER 552 (570)
...
T Consensus 184 ~~~ 186 (236)
T cd07651 184 NEI 186 (236)
T ss_pred HHH
Confidence 543
No 126
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=73.66 E-value=46 Score=41.13 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=37.9
Q ss_pred HhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHH
Q 008304 495 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 551 (570)
Q Consensus 495 ~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~E 551 (570)
.|-.+.-...+.-+.++.+|...||.|+.++...-.+-+.+..+.+.|++++..|.+
T Consensus 1605 ~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q 1661 (1758)
T KOG0994|consen 1605 EETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQ 1661 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556677777888999999999988776666655555555556555555443
No 127
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=73.61 E-value=1.4e+02 Score=32.50 Aligned_cols=32 Identities=13% Similarity=0.324 Sum_probs=26.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRA 488 (570)
Q Consensus 457 ~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~ 488 (570)
.....|.+|...+.|+.++...|++.+++-++
T Consensus 209 ~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 209 QQNLGLQKILEELREIKESQSRLEESIEKLKE 240 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888899999999988888887765
No 128
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=73.55 E-value=64 Score=31.25 Aligned_cols=83 Identities=20% Similarity=0.359 Sum_probs=37.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHh
Q 008304 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL----VEL 532 (570)
Q Consensus 457 ~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl----~~L 532 (570)
.+......|++-|+++..+.-.|+..|+....- ..-..|-.++.. .+.+|+.++++|+.|++... ..+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~-r~~~~eR~~~l~-------~l~~l~~~~~~l~~el~~~~~~Dp~~i 137 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG-REESEEREELLE-------ELEELKKELKELKKELEKYSENDPEKI 137 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 344455555555555555555555555544221 111123333333 44445555555555544221 234
Q ss_pred hhhHHHHHHHHhhhh
Q 008304 533 ESFRNEYANVRLECN 547 (570)
Q Consensus 533 Es~~~ErdaArle~~ 547 (570)
+.++.+...++.+++
T Consensus 138 ~~~~~~~~~~~~~an 152 (188)
T PF03962_consen 138 EKLKEEIKIAKEAAN 152 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 129
>PRK12704 phosphodiesterase; Provisional
Probab=73.34 E-value=61 Score=35.91 Aligned_cols=42 Identities=26% Similarity=0.276 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHH
Q 008304 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER 552 (570)
Q Consensus 511 v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ER 552 (570)
+.+.+.++++.++++..+..+|+....|++....+....-|+
T Consensus 105 Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~ 146 (520)
T PRK12704 105 LEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555555555555444444443333
No 130
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=73.18 E-value=92 Score=34.25 Aligned_cols=94 Identities=22% Similarity=0.289 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------------HHHh
Q 008304 467 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ--------------LVEL 532 (570)
Q Consensus 467 QhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQ--------------l~~L 532 (570)
.-|+..+.|-..|+..++.-+.=.+..-.|...|-++...-...|..|+.+|.+++.+|.+- ...|
T Consensus 295 ~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~L 374 (522)
T PF05701_consen 295 KELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKAL 374 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 33334444444444444333333333334444444555555556666666666666666432 2344
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhh
Q 008304 533 ESFRNEYANVRLECNAADERAKILASEV 560 (570)
Q Consensus 533 Es~~~ErdaArle~~aA~ERak~LAaEV 560 (570)
..+..|...|+.+...+.+-...+-.|+
T Consensus 375 qql~~Eae~Ak~ea~~~~~E~~~~k~E~ 402 (522)
T PF05701_consen 375 QQLSSEAEEAKKEAEEAKEEVEKAKEEA 402 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666555555444443
No 131
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=72.64 E-value=53 Score=32.21 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHH-HHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV-VNQL 514 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~-v~qL 514 (570)
.-|+-+..-|+++|.+++..|-.+ -.+++|.|-.++..++++++.+-.. |++|
T Consensus 22 s~~~~~~kqve~~~l~~lkqqqd~--itk~veeLe~~~~q~~~~~s~~~~~~vk~L 75 (165)
T PF09602_consen 22 SLFASFMKQVEQQTLKKLKQQQDW--ITKQVEELEKELKQFKREFSDLYEEYVKQL 75 (165)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888888888887766655 5667788888888888887776555 5555
No 132
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=72.45 E-value=60 Score=35.80 Aligned_cols=88 Identities=19% Similarity=0.247 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHH
Q 008304 479 LQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555 (570)
Q Consensus 479 LqRaLeks~~laEsLA~ENsALTdryN---qQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~ 555 (570)
+.+.|...++..+.|..|=+.|..+|- .-...+..++.+++.++.+++.-...+..-...|...+-++....++-..
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee 394 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE 394 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 556677777788888888888877753 22344555555555555555544444444444555555555555555555
Q ss_pred HHHhhhhhhhh
Q 008304 556 LASEVIGLEEK 566 (570)
Q Consensus 556 LAaEVV~LEEk 566 (570)
+-.+...+.+.
T Consensus 395 ie~eq~ei~e~ 405 (569)
T PRK04778 395 IEKEQEKLSEM 405 (569)
T ss_pred HHHHHHHHHHH
Confidence 55554444443
No 133
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=72.17 E-value=49 Score=33.16 Aligned_cols=14 Identities=36% Similarity=0.356 Sum_probs=9.5
Q ss_pred HHHhhhhhhhhhhc
Q 008304 556 LASEVIGLEEKVRS 569 (570)
Q Consensus 556 LAaEVV~LEEk~lq 569 (570)
|=+|+=-||+++.+
T Consensus 177 LR~e~s~LEeql~q 190 (193)
T PF14662_consen 177 LRLEKSRLEEQLSQ 190 (193)
T ss_pred HHHHHHHHHHHHHh
Confidence 44677778887654
No 134
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=71.98 E-value=67 Score=27.96 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 512 ~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~L 556 (570)
.....=+.+|...|..|...++.+..+.+.+|....+|.-+-+.|
T Consensus 64 ~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~l 108 (141)
T TIGR02473 64 SNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKAL 108 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666667777777777776666665544443
No 135
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=71.71 E-value=26 Score=29.67 Aligned_cols=66 Identities=17% Similarity=0.318 Sum_probs=46.0
Q ss_pred HHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHhhhh-HHHHHHHHhhhhhHHHHHHHHHHhhhhhhhh
Q 008304 501 TDSYNQQRSVVNQLKSEMEK-LQEEIKVQLVELESF-RNEYANVRLECNAADERAKILASEVIGLEEK 566 (570)
Q Consensus 501 TdryNqQ~~~v~qLk~dmEr-Lq~Ei~aQl~~LEs~-~~ErdaArle~~aA~ERak~LAaEVV~LEEk 566 (570)
.+..++--...+.+++++++ ++..++..+..++=+ ++|.|+.+.....+.+|-..|-+.|-.||+|
T Consensus 12 ~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 12 AKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444444556666654 445555555666555 4899999999999999999999999999875
No 136
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=71.63 E-value=1e+02 Score=30.99 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASR 487 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~ 487 (570)
|-+-.|+|+|.||-.+=-.+-+++++..
T Consensus 24 Dp~~~l~Q~ird~~~~l~~ar~~~A~~~ 51 (225)
T COG1842 24 DPEKMLEQAIRDMESELAKARQALAQAI 51 (225)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447888999887665444444444433
No 137
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.45 E-value=49 Score=29.07 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=12.8
Q ss_pred HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 008304 489 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 521 (570)
Q Consensus 489 laEsLA~ENsALTdryNqQ~~~v~qLk~dmErL 521 (570)
...-|--|-+.|.++-|.....+..++...|.|
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL 51 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREAL 51 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 333333344444444443333333333333333
No 138
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=71.43 E-value=33 Score=34.07 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaA 542 (570)
..++.+++.+-+.+..+...|.++++-=+....+-+++...+|.-....+--+++++++++.+..-...++..+.+|..+
T Consensus 115 K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~~ 194 (258)
T cd07655 115 KEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEKA 194 (258)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555566667777888777777777777777765432222224667777777777777777777888877
Q ss_pred HhhhhhHH
Q 008304 543 RLECNAAD 550 (570)
Q Consensus 543 rle~~aA~ 550 (570)
....+.-.
T Consensus 195 l~~~n~~~ 202 (258)
T cd07655 195 LEDLNKYN 202 (258)
T ss_pred HHHHHhhh
Confidence 66555444
No 139
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=70.99 E-value=47 Score=33.69 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304 514 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 514 Lk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~L 556 (570)
.+....+|++|++.+...+..++.|.+..|.+-..-=|+.|=|
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666665555555555444
No 140
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=70.98 E-value=50 Score=33.42 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=42.7
Q ss_pred HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHH
Q 008304 493 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER 552 (570)
Q Consensus 493 LA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ER 552 (570)
|.+||..+..+-+-....+...+.++|.++.+..+-.--.|.+.-|||++--+...-.++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 566677777777777777777777777777777777777777778888776555544443
No 141
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=70.63 E-value=37 Score=33.92 Aligned_cols=74 Identities=19% Similarity=0.350 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT------DSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 532 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALT------dryNqQ~~~v~qLk~dmErLq~Ei~aQl~~L 532 (570)
+.+.+.+++-|+.|..|.-.++..+.+.+..+..-..=. .-| ..|.+...++.+.+.+++.++.++..+...+
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~-~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 212 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGT-GGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAAL 212 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456666777777777777777777776665443221111 001 2355566666666777777777766666666
Q ss_pred h
Q 008304 533 E 533 (570)
Q Consensus 533 E 533 (570)
+
T Consensus 213 ~ 213 (301)
T PF14362_consen 213 D 213 (301)
T ss_pred H
Confidence 6
No 142
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=70.59 E-value=92 Score=31.45 Aligned_cols=78 Identities=24% Similarity=0.318 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008304 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erda 541 (570)
+...+.+|+|+..|+-.|.- --++.+|.|- -+-.++|.-..++.+++++.++.++.|....-++.-++.|.|.
T Consensus 27 ~e~ee~~L~e~~kE~~~L~~---Er~~h~eeLr----qI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 27 LENEEKCLEEYRKEMEELLQ---ERMAHVEELR----QINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666655532 1233333333 3456778888888888888888888888888888888888888
Q ss_pred HHhhh
Q 008304 542 VRLEC 546 (570)
Q Consensus 542 Arle~ 546 (570)
.|.+|
T Consensus 100 ~R~e~ 104 (230)
T PF10146_consen 100 LRKEY 104 (230)
T ss_pred HHHHH
Confidence 88774
No 143
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=70.42 E-value=50 Score=33.70 Aligned_cols=31 Identities=10% Similarity=-0.020 Sum_probs=23.5
Q ss_pred HHHhhhhHHHHHHHHhhhhhHHHHHHHHHHh
Q 008304 529 LVELESFRNEYANVRLECNAADERAKILASE 559 (570)
Q Consensus 529 l~~LEs~~~ErdaArle~~aA~ERak~LAaE 559 (570)
+.+++.+..|++.|+.-+..+-.|-+.+-.|
T Consensus 277 ~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~ 307 (362)
T TIGR01010 277 TADYQRLVLQNELAQQQLKAALTSLQQTRVE 307 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888888888888888877766544
No 144
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=70.19 E-value=1.7e+02 Score=31.94 Aligned_cols=30 Identities=33% Similarity=0.567 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQ-EKFALQRSLEASRA 488 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~-EKfaLqRaLeks~~ 488 (570)
..++.+|++-|.+|+. ++-.++++|+.+.+
T Consensus 257 ~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~ 287 (582)
T PF09731_consen 257 KERIDALQKELAELKEEEEEELERALEEQRE 287 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777766 55577788877764
No 145
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=70.08 E-value=27 Score=38.99 Aligned_cols=79 Identities=14% Similarity=0.320 Sum_probs=51.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-
Q 008304 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR- 536 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~- 536 (570)
+.+++..++|-|+.|++.++.=--.+++..+-.+.|..|= .+-...+..++.++++.+.+++.|+.+|++..
T Consensus 189 ~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~-------~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~ 261 (555)
T TIGR03545 189 NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEG-------KADKQKIKSAKNDLQNDKKQLKADLAELKKAPQ 261 (555)
T ss_pred CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccH
Confidence 4778999999999999986654444444444444444443 34445566777777777777777777777665
Q ss_pred HHHHHHH
Q 008304 537 NEYANVR 543 (570)
Q Consensus 537 ~ErdaAr 543 (570)
..+++.+
T Consensus 262 ~D~~~L~ 268 (555)
T TIGR03545 262 NDLKRLE 268 (555)
T ss_pred hHHHHHH
Confidence 4444444
No 146
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=70.03 E-value=76 Score=35.98 Aligned_cols=11 Identities=18% Similarity=0.495 Sum_probs=5.5
Q ss_pred HHHHHHHhhhh
Q 008304 537 NEYANVRLECN 547 (570)
Q Consensus 537 ~ErdaArle~~ 547 (570)
.||...+..+.
T Consensus 426 ~e~r~lk~~~~ 436 (594)
T PF05667_consen 426 EEYRRLKEKAS 436 (594)
T ss_pred HHHHHHHHHHh
Confidence 45555554444
No 147
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=69.79 E-value=19 Score=31.59 Aligned_cols=49 Identities=18% Similarity=0.330 Sum_probs=34.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304 501 TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 501 TdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~L 556 (570)
+-+-|+....|..|-..++||++ ++++.+.|..+|+.++..|.+|.-..
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~-------dv~a~~~~~qAAk~eaarAn~rldn~ 72 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLEN-------DVNAMRSDVQAAKDEAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 44567777777777777777774 46667777888888888888876543
No 148
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=69.59 E-value=88 Score=32.40 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHH
Q 008304 496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA 557 (570)
Q Consensus 496 ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LA 557 (570)
+.+.+..+.++....+++++.++..+. .+...+..+..|++.++.-++...+|-+.+.
T Consensus 312 ~~~~~~~~~~~l~~~l~~~~~~~~~l~----~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 312 NSRILKQREAELREALENQKAKVLELN----RQRDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444443444444443333332 3455677888899999999988888877654
No 149
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=69.55 E-value=20 Score=37.07 Aligned_cols=62 Identities=19% Similarity=0.321 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLE-ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEK 520 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLe-ks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmEr 520 (570)
++.|+.|++.|+.+.+.--.+.-+++ +-.+..+.+++...+|..+..++...+.+|+..|+.
T Consensus 191 ~~~~~~~~~ave~ia~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~~~~~~~~~f~~L~~~L~~ 253 (276)
T PF05929_consen 191 DEQFADLQQAVEAIAEQQQELEEAFEEQLSEQETQVAELKQELKEQHEALTEDFAALKEKLSS 253 (276)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhC
Confidence 78899999999988776655544443 223444555555555555555555555555555443
No 150
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=69.51 E-value=1.2e+02 Score=33.93 Aligned_cols=68 Identities=15% Similarity=0.258 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEAS--RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks--~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~ 526 (570)
..++..|..-|+++..|-..+.+-|..+ .+..+.|-.+-..+..+..+....++.++.++++++.+|.
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~ 459 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIE 459 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777653 3444444444444444444444444444444444444433
No 151
>PRK11281 hypothetical protein; Provisional
Probab=69.37 E-value=21 Score=43.06 Aligned_cols=12 Identities=33% Similarity=0.271 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 008304 462 FAALEQHIEDLT 473 (570)
Q Consensus 462 FAaLqQhIeDLT 473 (570)
...||+-++-|.
T Consensus 62 ~~~l~~tL~~L~ 73 (1113)
T PRK11281 62 QQDLEQTLALLD 73 (1113)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 152
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=69.37 E-value=51 Score=36.68 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV 510 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~ 510 (570)
.+...|++-|+++..+.-.+...++..++-.+.+..+-..+.+.|...|+.
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~ 259 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGD 259 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 344444444444444444444444444444444455555555555555543
No 153
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.27 E-value=46 Score=34.57 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008304 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erda 541 (570)
...=+.-|.+++.++-.+|-.|+.-..=++.+-.+-..+..++++-...+.+|+.+++.+.+.|..+.-.| .+|.|
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l----~~raR 108 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL----KKRAR 108 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 55567788999999999998888877777777777777777777777777777777777777766555444 45555
Q ss_pred HHh
Q 008304 542 VRL 544 (570)
Q Consensus 542 Arl 544 (570)
|-+
T Consensus 109 Amq 111 (265)
T COG3883 109 AMQ 111 (265)
T ss_pred HHH
Confidence 544
No 154
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=68.99 E-value=55 Score=27.82 Aligned_cols=60 Identities=22% Similarity=0.328 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 008304 479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538 (570)
Q Consensus 479 LqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~E 538 (570)
|++-|.-=+.|-|+|-.-|.++-++|+.-..-=+..+++.+-+...++..+.-++.++.|
T Consensus 8 l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~E 67 (68)
T PF11577_consen 8 LQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKEE 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 556666677888899999999999999988888888888888888887777777777655
No 155
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=68.96 E-value=44 Score=35.39 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHH
Q 008304 475 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 554 (570)
Q Consensus 475 EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak 554 (570)
++-.|..-|..+++-+..|..|...|..++++-.+-+.-|+..+.+++-... ......+-.||.+.....-.+.++..
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~--~~~~~~~~~ere~lV~qLEk~~~q~~ 143 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE--GIGARHFPHEREDLVEQLEKLREQIE 143 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc--cccccccchHHHHHHHHHHHHHHHHH
Confidence 5667778888888888888888888888887777777777766666654432 22222333888888888888888888
Q ss_pred HHHHhhhhhh
Q 008304 555 ILASEVIGLE 564 (570)
Q Consensus 555 ~LAaEVV~LE 564 (570)
.|.-|+-.+-
T Consensus 144 qLe~d~qs~l 153 (319)
T PF09789_consen 144 QLERDLQSLL 153 (319)
T ss_pred HHHHHHHHHH
Confidence 8888887654
No 156
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=68.36 E-value=91 Score=28.08 Aligned_cols=93 Identities=12% Similarity=0.093 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRAL-------SESLAAENSSLTDSYNQQR------SVVNQLKSEMEKLQEEIKVQLV 530 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~l-------aEsLA~ENsALTdryNqQ~------~~v~qLk~dmErLq~Ei~aQl~ 530 (570)
.|+.+++=-.++.-...+.|.+++.. .+.|...-.....++++.+ ..+.....=+++|.+.|..|..
T Consensus 6 rL~~vL~l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~ 85 (146)
T PRK07720 6 RLQKVLELKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQL 85 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555554444444444444444433 3444444445555554422 2334556678888888888888
Q ss_pred HhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304 531 ELESFRNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 531 ~LEs~~~ErdaArle~~aA~ERak~L 556 (570)
.|+.+..+.+.++....+|.-+-++|
T Consensus 86 ~v~~~~~~ve~~r~~~~ea~~~~k~~ 111 (146)
T PRK07720 86 LVMQAREQMNRKQQDLTEKNIEVKKY 111 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887777665
No 157
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.16 E-value=34 Score=37.14 Aligned_cols=93 Identities=27% Similarity=0.350 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHhhh
Q 008304 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV-------VNQLKSEMEKLQEEIKVQLVELES 534 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~-------v~qLk~dmErLq~Ei~aQl~~LEs 534 (570)
..+|.|.+.|+++|--.|-|.|+-+.+.-+.|++|-++ .|++|.+. +++|.+++.-|-.||+.- +.||.
T Consensus 150 L~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQa---tf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnL-LQle~ 225 (401)
T PF06785_consen 150 LDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQA---TFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNL-LQLES 225 (401)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhh
Confidence 44566777777888888888888888888888877665 57777765 456666666666666653 44555
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHh
Q 008304 535 FRNEYANVRLECNAADERAKILASE 559 (570)
Q Consensus 535 ~~~ErdaArle~~aA~ERak~LAaE 559 (570)
=+.| +.-++++..+.+-.+.|.+|
T Consensus 226 ~~~e-~~p~~~~~~s~~v~~ql~se 249 (401)
T PF06785_consen 226 DMKE-SMPSTPSPSSQDVPKQLVSE 249 (401)
T ss_pred hhhh-cCCCCCcchhhhhHHHHHHH
Confidence 5555 66677776666666555544
No 158
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=67.66 E-value=30 Score=29.66 Aligned_cols=30 Identities=40% Similarity=0.473 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008304 467 QHIEDLTQEKFALQRSLEASRALSESLAAE 496 (570)
Q Consensus 467 QhIeDLT~EKfaLqRaLeks~~laEsLA~E 496 (570)
..|-+|.+++-.++..++..++---.++.+
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~ 58 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKE 58 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345556666666666666655544444444
No 159
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=67.63 E-value=64 Score=31.25 Aligned_cols=79 Identities=20% Similarity=0.266 Sum_probs=50.9
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008304 450 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 450 ~~~F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl 529 (570)
-.+||=.=..+....++.-++.|+.+.-.+...++.-++-.+.+..+.+.= ..-.++-.+++.|+.+++...
T Consensus 52 ssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~--------~eR~~~l~~l~~l~~~~~~l~ 123 (188)
T PF03962_consen 52 SSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES--------EEREELLEELEELKKELKELK 123 (188)
T ss_pred CeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHHHHHHHHHH
Confidence 356777777888999999999999998888777776665555543332211 233345555666666666666
Q ss_pred HHhhhhH
Q 008304 530 VELESFR 536 (570)
Q Consensus 530 ~~LEs~~ 536 (570)
.+|+.+.
T Consensus 124 ~el~~~~ 130 (188)
T PF03962_consen 124 KELEKYS 130 (188)
T ss_pred HHHHHHH
Confidence 6666443
No 160
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=67.57 E-value=1.5e+02 Score=31.61 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=6.3
Q ss_pred hhhHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLT 473 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT 473 (570)
..+...|++.+..|.
T Consensus 96 ~~~~~~~~~~~~~~~ 110 (457)
T TIGR01000 96 ENQKQLLEQQLDNLK 110 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 161
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=67.53 E-value=40 Score=38.77 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=35.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (570)
Q Consensus 456 ~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq 522 (570)
+...+-+..|-|.++-|.+|= +.++...-+.+..--..|.+.+.+|-..+.+|+++++.|+
T Consensus 532 p~~~E~l~lL~~a~~vlreeY------i~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~ 592 (717)
T PF10168_consen 532 PSPQECLELLSQATKVLREEY------IEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR 592 (717)
T ss_pred CCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777877777776541 2222233344444445566666666666666666666665
No 162
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=67.52 E-value=88 Score=30.69 Aligned_cols=68 Identities=16% Similarity=0.292 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~a 527 (570)
.+++.|+.+|++|..|--.|.+---++.+--.-.-+.+..|-+--..-...|-.|+..+.+.++...+
T Consensus 19 n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~ 86 (194)
T PF15619_consen 19 NELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERE 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888887776666555554445554444444444444444555555555555444333
No 163
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=67.47 E-value=73 Score=26.88 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 008304 479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 546 (570)
Q Consensus 479 LqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~ 546 (570)
|++.|.---+...+|-.|-+.|...=-++...|..|+..+..++.+|...-..++....|.++.+...
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555666777777777777777777777777777777777666666666665555554433
No 164
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=67.23 E-value=84 Score=34.28 Aligned_cols=86 Identities=24% Similarity=0.426 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008304 464 ALEQHIEDLTQEKFALQ---RSLEASRALSESLAAENSSLTDSYNQQR-------SVVNQLKSEMEKLQEEIKVQLVELE 533 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLq---RaLeks~~laEsLA~ENsALTdryNqQ~-------~~v~qLk~dmErLq~Ei~aQl~~LE 533 (570)
-||-.|..+|+.--.|- ..++.-|.=+++|-..|+.|...-=+-+ +....|...+.++++|-++..+.|+
T Consensus 72 llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 72 LLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 47778888886543332 2344444456677777777765544444 4445555555566666555555555
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHH
Q 008304 534 SFRNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 534 s~~~ErdaArle~~aA~ERak~L 556 (570)
++ .++|.+-.|+++.|
T Consensus 152 ~l-------~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 152 AL-------QQECGEKEEESQTL 167 (401)
T ss_pred HH-------HHHHhHhHHHHHHH
Confidence 54 45555555555554
No 165
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=67.20 E-value=18 Score=32.17 Aligned_cols=44 Identities=14% Similarity=0.124 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHH
Q 008304 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 554 (570)
Q Consensus 511 v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak 554 (570)
..+++.+++.+++|++....+.+.++.|.+..+..-....|+||
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR 72 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERAR 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 34444555555555555555566666666665554445555555
No 166
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=67.18 E-value=29 Score=35.46 Aligned_cols=74 Identities=23% Similarity=0.258 Sum_probs=46.9
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----------HHhhhhhHHHHHHHHHHhhhhhhhh
Q 008304 497 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN----------VRLECNAADERAKILASEVIGLEEK 566 (570)
Q Consensus 497 NsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erda----------Arle~~aA~ERak~LAaEVV~LEEk 566 (570)
+..+.++|++....-.+|...|+.|+.+|+.|...|+....-... ........+|=-+.=-.||=.||.|
T Consensus 175 ~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k 254 (259)
T PF08657_consen 175 LPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERK 254 (259)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 336777888888888888888888888888888888877521111 1111112222223333577788888
Q ss_pred hhcC
Q 008304 567 VRSL 570 (570)
Q Consensus 567 ~lqL 570 (570)
+.+|
T Consensus 255 ~~~L 258 (259)
T PF08657_consen 255 KREL 258 (259)
T ss_pred HHhc
Confidence 8765
No 167
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=66.87 E-value=1.1e+02 Score=34.52 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=22.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHhhh
Q 008304 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL-ESFRNEYANVRLEC 546 (570)
Q Consensus 500 LTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~L-Es~~~ErdaArle~ 546 (570)
|+.+|-..--.|-+++.+++.|+++|+.++..+ .++..|++.|+..-
T Consensus 307 l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~ 354 (754)
T TIGR01005 307 LSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARE 354 (754)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455556666666666555433332 33344444444333
No 168
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=66.75 E-value=69 Score=36.49 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH
Q 008304 476 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE 517 (570)
Q Consensus 476 KfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~d 517 (570)
...+.+-|++..+-.++|+.|+++|...|=+|+..|++|+.+
T Consensus 232 ~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~e 273 (617)
T PF15070_consen 232 RDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHE 273 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445677777778889999999998888888888777643
No 169
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.60 E-value=1.5e+02 Score=29.95 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEAS---RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks---~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~ 536 (570)
+-|-.++.+|+.-|-.|...++-. ....+.+..|-+.|.+-+..-..++.+...|+..|+..|+.-..+.+...
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~ 80 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQ 80 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666665554432 23344455555555555555555555555555555555544444444433
No 170
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=66.48 E-value=63 Score=38.63 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008304 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 483 Leks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl 529 (570)
|+.+..++|.--+.-+.--.++-+-...|.+||+.+.-+|+-+.+|.
T Consensus 364 LEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQ 410 (1480)
T COG3096 364 LEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQ 410 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444444433222222223344444455555555555555555543
No 171
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=66.19 E-value=1.8e+02 Score=32.49 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQ 507 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ 507 (570)
.|=.+.+|..+.+.++|..-|-.|++-.+-++.|-.+--.|...|-+.
T Consensus 116 ~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql 163 (499)
T COG4372 116 QEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQL 163 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777888888888877777777766666666665555555433
No 172
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=65.97 E-value=61 Score=32.85 Aligned_cols=70 Identities=24% Similarity=0.359 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhh
Q 008304 478 ALQRSLEASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 548 (570)
Q Consensus 478 aLqRaLeks~~laEsLA~ENsALTdryNqQ~~---~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~a 548 (570)
.|.|.|..-++. |..-.+|.++.+.-+-++. ....++.+.+.|+.|++.-.-+||.....+++.+--...
T Consensus 118 ~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 118 TLLRELATLRAN-EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG 190 (216)
T ss_pred HHHHHHHHHHhh-HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555 6677778888877777654 566677888888888888888888888888877654433
No 173
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=65.92 E-value=35 Score=30.81 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 506 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNq 506 (570)
+.|+.|++.|..|..+=-+|...+..--+=+..|--||..|.++..+
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888776666666666555566666666666665544
No 174
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=65.62 E-value=75 Score=28.08 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=17.9
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008304 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 525 (570)
Q Consensus 491 EsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei 525 (570)
+.|-.+|..|.+..+.-.+.-.+|..+-++|++|.
T Consensus 28 eELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 28 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34555555555555554444455555555555443
No 175
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=65.59 E-value=33 Score=38.70 Aligned_cols=40 Identities=13% Similarity=0.281 Sum_probs=22.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008304 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (570)
Q Consensus 500 LTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Er 539 (570)
+.++.-+....+.-|.+++++++++++....+|+.|+.+.
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444555566666666666666666666666544
No 176
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=65.40 E-value=82 Score=26.46 Aligned_cols=26 Identities=15% Similarity=0.288 Sum_probs=12.4
Q ss_pred HHHHHhhhhHHHHHHHHhhhhhHHHH
Q 008304 527 VQLVELESFRNEYANVRLECNAADER 552 (570)
Q Consensus 527 aQl~~LEs~~~ErdaArle~~aA~ER 552 (570)
.+....+.|+.+.-.+-.+|+.+..+
T Consensus 86 ~~~~q~~~L~~~f~~~m~~fq~~Q~~ 111 (117)
T smart00503 86 TRKAQTEKLRKKFKEVMNEFQRLQRK 111 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555444433
No 177
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=65.36 E-value=60 Score=30.30 Aligned_cols=35 Identities=17% Similarity=0.450 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 530 (570)
Q Consensus 496 ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~ 530 (570)
.+++|+.+|-.+...+.+|+..++.|++.++.-..
T Consensus 139 ~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 139 GVPALLRDYDKTKEEVEELRKEIKELERKVEILEM 173 (177)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888988999999999999999999987665443
No 178
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=65.32 E-value=1.9e+02 Score=32.02 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=51.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 008304 477 FALQRSLE-ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 544 (570)
Q Consensus 477 faLqRaLe-ks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArl 544 (570)
..|+-+++ +.++|.-.|.+|-++-.+..-+--+++.-|..+.|||+++|.-...+...+..+.|...+
T Consensus 106 ~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~ 174 (561)
T KOG1103|consen 106 ASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEM 174 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 578899999999998887777777788899999999999998887777665555554333
No 179
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=65.32 E-value=63 Score=31.25 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHh
Q 008304 478 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE-LESFRNEYANVRL 544 (570)
Q Consensus 478 aLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~-LEs~~~ErdaArl 544 (570)
.+..+|++-+ ....|..+...|....++....+..|+.+++.++......+.. .+....|.+..+.
T Consensus 111 ~~rk~l~~e~-~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~ 177 (189)
T PF10211_consen 111 GMRKALQAEQ-GKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKK 177 (189)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444432 3456666677777777777777777777777776666543333 3334455555443
No 180
>PRK10698 phage shock protein PspA; Provisional
Probab=65.26 E-value=1.5e+02 Score=29.39 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHh-----------hhHHHHHHHHhHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSE---------------SLAAE-----------NSSLTDSYNQQRSVVNQ 513 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laE---------------sLA~E-----------NsALTdryNqQ~~~v~q 513 (570)
++...+.+.+-...-++-.+.|.++..++.++ .||.+ -..|...+.++...+.+
T Consensus 38 ~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~ 117 (222)
T PRK10698 38 DTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLAR 117 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555444332 23332 44555557777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhH
Q 008304 514 LKSEMEKLQEEIKVQLVELESFR 536 (570)
Q Consensus 514 Lk~dmErLq~Ei~aQl~~LEs~~ 536 (570)
|+.++.+|+..|..-......+.
T Consensus 118 L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 118 MKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78877777766655555555544
No 181
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=65.10 E-value=74 Score=26.44 Aligned_cols=85 Identities=22% Similarity=0.381 Sum_probs=61.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---------HHhHHHHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY---------NQQRSVVNQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdry---------NqQ~~~v~qLk~dmErLq~Ei~aQl 529 (570)
...|..|.+.+..+...+-.|.+.+.....+.+.|..=.+. +.-| .....++..|+.+++.++.+|....
T Consensus 4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~-~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~ 82 (106)
T PF01920_consen 4 QNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDD-RKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLE 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT--EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999888888888765444 1111 2345677778888888887777777
Q ss_pred HHhhhhHHHHHHHHh
Q 008304 530 VELESFRNEYANVRL 544 (570)
Q Consensus 530 ~~LEs~~~ErdaArl 544 (570)
-.++.+..+....+-
T Consensus 83 ~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 83 KQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777666666655443
No 182
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=65.01 E-value=89 Score=36.94 Aligned_cols=94 Identities=26% Similarity=0.325 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHH---HHHHHHHHHHHHH-HHHHHHHHHh----------
Q 008304 467 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEMEKLQ-EEIKVQLVEL---------- 532 (570)
Q Consensus 467 QhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~---~v~qLk~dmErLq-~Ei~aQl~~L---------- 532 (570)
..|+.|+-|+-.--..+..+|.+++.|...|-++-..||.-.+ .-+.||.|-.+-+ +++..|..+|
T Consensus 523 E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~ 602 (961)
T KOG4673|consen 523 ETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQ 602 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555556667777777777777777777776665 2344442222222 2222222221
Q ss_pred -----hhhHHHHHHHHhhhhhHHHHHHHHHHhh
Q 008304 533 -----ESFRNEYANVRLECNAADERAKILASEV 560 (570)
Q Consensus 533 -----Es~~~ErdaArle~~aA~ERak~LAaEV 560 (570)
.-|+.|..-.+.+..+|.-|+..|.-+|
T Consensus 603 aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 603 AARREDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2355677777778888888888777665
No 183
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.97 E-value=61 Score=39.20 Aligned_cols=98 Identities=23% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhh
Q 008304 469 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 548 (570)
Q Consensus 469 IeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~a 548 (570)
...|-+--.-|--+|=|-|+|.-+=-.+...+.+-.-.-..++++|++.-|+|.+++..-.+.+..|++-.||| --
T Consensus 370 fkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA----lG 445 (1243)
T KOG0971|consen 370 FKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA----LG 445 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hc
Q ss_pred HHHHHHHHHHhhhhhhhhhhcC
Q 008304 549 ADERAKILASEVIGLEEKVRSL 570 (570)
Q Consensus 549 A~ERak~LAaEVV~LEEk~lqL 570 (570)
|.|=.--|+.--+.|||||+.|
T Consensus 446 AE~MV~qLtdknlnlEekVklL 467 (1243)
T KOG0971|consen 446 AEEMVEQLTDKNLNLEEKVKLL 467 (1243)
T ss_pred HHHHHHHHHhhccCHHHHHHHH
No 184
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=64.91 E-value=70 Score=34.56 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESL 493 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsL 493 (570)
.++...|++.+.++..++-+++..++--..+.+.+
T Consensus 77 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (525)
T TIGR02231 77 RKQIRELEAELRDLEDRGDALKALAKFLEDIREGL 111 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 67888999999999888888777665555555433
No 185
>PRK14140 heat shock protein GrpE; Provisional
Probab=64.91 E-value=32 Score=33.86 Aligned_cols=27 Identities=11% Similarity=0.245 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHh
Q 008304 533 ESFRNEYANVRLECNAADERAKILASE 559 (570)
Q Consensus 533 Es~~~ErdaArle~~aA~ERak~LAaE 559 (570)
--+.+|.+|+|.+...-.++++..|.+
T Consensus 61 lR~~Ae~eN~rkR~~rE~~~~~~~a~~ 87 (191)
T PRK14140 61 LRLQADFENYKRRIQKENEAAEKYRAQ 87 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555544444444444443
No 186
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=64.89 E-value=61 Score=24.83 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAA-----ENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~-----ENsALTdryNqQ~~~v~qLk~dmErLq 522 (570)
+++.|++++..|....-.|.-.+.+-+..++.|.. ...+..+.|++-...+..+...|+.+.
T Consensus 5 d~~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~ 71 (86)
T PF06013_consen 5 DPEQLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEELS 71 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999998888888888888888877777732 234445555544444444444444444
No 187
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=64.48 E-value=1.3e+02 Score=38.46 Aligned_cols=108 Identities=29% Similarity=0.372 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHhhhH-------HHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALS---------------------------ESLAAENSS-------LTDSYN 505 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~la---------------------------EsLA~ENsA-------LTdryN 505 (570)
.|=++|.|-++-|.++-..|+|.|-+.++-. -.|-.||.+ |.+.+|
T Consensus 1174 ~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~ 1253 (1822)
T KOG4674|consen 1174 RENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIE 1253 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888888888888887766544 123445544 444555
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHH--------HHHHHHhhhhhhhhh
Q 008304 506 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER--------AKILASEVIGLEEKV 567 (570)
Q Consensus 506 qQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ER--------ak~LAaEVV~LEEk~ 567 (570)
...-.+..|+..+..|..+|..-.++++-++.|-+.-+++.++--+. -+.|.+|+=.||+..
T Consensus 1254 kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el 1323 (1822)
T KOG4674|consen 1254 KLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEEL 1323 (1822)
T ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 55555556666666667777778888899999999999998887766 577888888888764
No 188
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.47 E-value=29 Score=32.12 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 008304 463 AALEQHIEDLTQEK 476 (570)
Q Consensus 463 AaLqQhIeDLT~EK 476 (570)
++++..+|.|.+++
T Consensus 33 ~~v~k~Ld~L~~~g 46 (169)
T PF07106_consen 33 TAVQKALDSLVEEG 46 (169)
T ss_pred HHHHHHHHHHHhCC
Confidence 44455555554443
No 189
>PRK14148 heat shock protein GrpE; Provisional
Probab=64.42 E-value=45 Score=32.94 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=11.9
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHh
Q 008304 534 SFRNEYANVRLECNAADERAKILASE 559 (570)
Q Consensus 534 s~~~ErdaArle~~aA~ERak~LAaE 559 (570)
-+.+|.+|+|-+...-.+.++..|.|
T Consensus 65 R~~Ae~eN~rKR~~rE~e~~~~~a~~ 90 (195)
T PRK14148 65 RAKAEMENIRKRAERDVSNARKFGIE 90 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455544444444444444443
No 190
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=64.24 E-value=1.4e+02 Score=28.80 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHH
Q 008304 506 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER 552 (570)
Q Consensus 506 qQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ER 552 (570)
.+...+......++..+++|..+...|+....|++..+.+....-|+
T Consensus 96 ~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~ 142 (201)
T PF12072_consen 96 RRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEE 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444555555555554444444443
No 191
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=64.04 E-value=70 Score=38.76 Aligned_cols=116 Identities=26% Similarity=0.366 Sum_probs=70.1
Q ss_pred cccccccccchhhHHHH-------------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 008304 449 NQHGFYSTKHNEDFAAL-------------------EQHIE--DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQ 507 (570)
Q Consensus 449 ~~~~F~s~~~~ddFAaL-------------------qQhIe--DLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ 507 (570)
+---|....+-.+||.| ++|++ ||-++--+|++.+..-.+--+.|-+++++|....+.-
T Consensus 142 NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~ 221 (1072)
T KOG0979|consen 142 NLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERV 221 (1072)
T ss_pred chhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777888888854 45554 5566666777777777777777777777776666544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 508 ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
... ...++.+|.|+. +--.+..+....||.+.++...-|.+--|.|--|+.-+|.+.
T Consensus 222 rer-~~~~~~Ie~l~~--k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~ 278 (1072)
T KOG0979|consen 222 RER-ERKKSKIELLEK--KKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKK 278 (1072)
T ss_pred HHH-HHHHHHHHHHHH--hccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 332 233444444431 112344455556676666666666666666666666665554
No 192
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=63.77 E-value=1.4e+02 Score=33.23 Aligned_cols=100 Identities=18% Similarity=0.143 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH------
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR------ 536 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~------ 536 (570)
++++|-+.||.+|.-....+..+-.+-.--|-+|-.++.-.|-..-..++.||+|.-+|.+|.-.-.+..+.+.
T Consensus 9 s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~ 88 (459)
T KOG0288|consen 9 SENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIA 88 (459)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777654433333222222222344566777778888888888888888888777554333322221
Q ss_pred -HHHHHHHhhhhhHHHHH-HHHHHhhhh
Q 008304 537 -NEYANVRLECNAADERA-KILASEVIG 562 (570)
Q Consensus 537 -~ErdaArle~~aA~ERa-k~LAaEVV~ 562 (570)
.+|-+..++.-.+.||. -.+-+|++.
T Consensus 89 en~~~r~~~eir~~~~q~~e~~n~~~~l 116 (459)
T KOG0288|consen 89 ENLRIRSLNEIRELREQKAEFENAELAL 116 (459)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccchhhH
Confidence 34444555555555543 333444443
No 193
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=63.28 E-value=23 Score=29.46 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHH---hhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304 520 KLQEEIKVQLVE---LESFRNEYANVRLECNAADERAKILASEVIGLEEKVR 568 (570)
Q Consensus 520 rLq~Ei~aQl~~---LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~l 568 (570)
.|+.||+|..+. |..+++.+-++.....+|..|-+.|-.||=.|++++-
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777654 4556678888888889999999999999999998864
No 194
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=63.26 E-value=1.1e+02 Score=29.61 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 008304 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN 547 (570)
Q Consensus 509 ~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~ 547 (570)
.....+..++++++.++.....+++..+.-|+.+-.+..
T Consensus 105 ~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~ 143 (251)
T cd07653 105 QERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAE 143 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444433333
No 195
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=63.23 E-value=1.1e+02 Score=37.25 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEA 485 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLek 485 (570)
+.+-+.|+|.|++..+++-.+++.|++
T Consensus 64 ~~~~~~~~~~i~~ap~~~~~~~~~l~~ 90 (1109)
T PRK10929 64 LERAKQYQQVIDNFPKLSAELRQQLNN 90 (1109)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 456677888888888888888887773
No 196
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=63.05 E-value=3.8 Score=38.84 Aligned_cols=86 Identities=22% Similarity=0.332 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaA 542 (570)
-+|++|+..|+.+|-.|...+ ..|..||..|-+.+-.....+-+=+.++.+|+++++--.--+.-.+.|-+..
T Consensus 11 ~~l~~~L~~l~~erqkl~~qv-------~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~~ 83 (181)
T PF09311_consen 11 RALQQHLQSLEAERQKLRAQV-------RRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIES 83 (181)
T ss_dssp HHHHHHHHHHHHCCHHHHT-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhcccccccc
Confidence 367889999988887665544 4577789888888765555554445666666666555545555556677777
Q ss_pred HhhhhhHHHHHHH
Q 008304 543 RLECNAADERAKI 555 (570)
Q Consensus 543 rle~~aA~ERak~ 555 (570)
+..+.++.++.+.
T Consensus 84 ~~~~e~~e~~~~~ 96 (181)
T PF09311_consen 84 RTAAEHEEEKLRS 96 (181)
T ss_dssp -------------
T ss_pred chhhhhhhhcccc
Confidence 7777777776653
No 197
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=62.97 E-value=93 Score=38.49 Aligned_cols=91 Identities=27% Similarity=0.318 Sum_probs=52.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHH---HH
Q 008304 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ----QRSVVNQLKSEMEKLQEEIKVQ---LV 530 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNq----Q~~~v~qLk~dmErLq~Ei~aQ---l~ 530 (570)
..+.-+-|++.|+.++.+...|+| ++.+|++.=..|+......-.+ .-..+.+|+++|+.+++..+.- .-
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~~---~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~ 539 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQR---EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLE 539 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667899999999999999998 4444444433333322222222 2234455566666665554443 33
Q ss_pred HhhhhHHHHHHHHhhhhhHHH
Q 008304 531 ELESFRNEYANVRLECNAADE 551 (570)
Q Consensus 531 ~LEs~~~ErdaArle~~aA~E 551 (570)
.+.+++.+.+.+.+++.+..|
T Consensus 540 kv~~~rk~le~~~~d~~~e~~ 560 (1317)
T KOG0612|consen 540 KVNSLRKQLEEAELDMRAESE 560 (1317)
T ss_pred hHHHHHHHHHHhhhhhhhhHH
Confidence 344555666666666665444
No 198
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=62.77 E-value=2.2e+02 Score=30.49 Aligned_cols=110 Identities=14% Similarity=0.150 Sum_probs=65.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008304 458 HNEDFAALEQHIEDLTQEKFAL----QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~EKfaL----qRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LE 533 (570)
..|||..|-..+..|...=-.+ ......-...+++|+.-.+.+.....+|...+.+....|+++-..+..-....+
T Consensus 243 ~~DEig~l~~s~n~m~~~l~~~i~~i~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~ 322 (553)
T PRK15048 243 GRSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNAR 322 (553)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566766666665554432222 233333345667777778888888888888888888888888876654433344
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 534 SFRNEYANVRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 534 s~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
.....-..+...+....+....+...+-.|.+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 356 (553)
T PRK15048 323 QASQLAQSASDTAQHGGKVVDGVVKTMHEIADSS 356 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444445555555555544
No 199
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=62.74 E-value=1.6e+02 Score=28.93 Aligned_cols=31 Identities=10% Similarity=0.182 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHH
Q 008304 479 LQRSLEASRALSESLAAENSSLTDSYNQQRS 509 (570)
Q Consensus 479 LqRaLeks~~laEsLA~ENsALTdryNqQ~~ 509 (570)
|...|..+...++........+.++....-+
T Consensus 97 lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~ 127 (237)
T PF00261_consen 97 LEQQLKEAKRRAEEAERKYEEVERKLKVLEQ 127 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444444444444333
No 200
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=62.73 E-value=33 Score=35.65 Aligned_cols=27 Identities=37% Similarity=0.393 Sum_probs=15.9
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhcC
Q 008304 544 LECNAADERAKILASEVIGLEEKVRSL 570 (570)
Q Consensus 544 le~~aA~ERak~LAaEVV~LEEk~lqL 570 (570)
.++++-+||-+.|--|--.|||+..+|
T Consensus 163 ~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 163 AEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455566666666666666665543
No 201
>PRK15396 murein lipoprotein; Provisional
Probab=62.49 E-value=28 Score=30.22 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=33.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHhh
Q 008304 503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE--YANVRLE 545 (570)
Q Consensus 503 ryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~E--rdaArle 545 (570)
+.++....|..|+.++.++.+++++-..+..+.++| |+|-|++
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888889999999999998888888888855 4554544
No 202
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=62.26 E-value=1.6e+02 Score=28.78 Aligned_cols=44 Identities=16% Similarity=0.385 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 008304 478 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 521 (570)
Q Consensus 478 aLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErL 521 (570)
.|.+-.++...++..+..||..|++---.....+.+|+.++..+
T Consensus 38 emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 38 EMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555555555555554444444444444444333
No 203
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=62.09 E-value=1.9e+02 Score=33.00 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=18.0
Q ss_pred HhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008304 495 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (570)
Q Consensus 495 ~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs 534 (570)
+|..-+.+++..--..+..|+.+..+|+.+|+.-...|+.
T Consensus 155 Ae~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 155 AEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443333
No 204
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=61.81 E-value=1.2e+02 Score=35.55 Aligned_cols=71 Identities=23% Similarity=0.251 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~ 531 (570)
+..+.+||.+-|..+-.+|.=-|+.....-+....-+..+.+-.+...+.|..|++.++..+.+|.+-...
T Consensus 330 sl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 330 SLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK 400 (775)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554444444444444444444444444444444444444444444444444333
No 205
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=61.73 E-value=1.1e+02 Score=35.43 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=68.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ---QRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNq---Q~~~v~qLk~dmErLq~Ei~aQl~~LEs~ 535 (570)
..+...|+..++.|++|--.|+|-|++.++..+.|-.+-+.+-++.-. -.-.+.++.+.++.|+.+++-+-...+.|
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999998888877752 22356677788888888888888888888
Q ss_pred HHHHHHHH
Q 008304 536 RNEYANVR 543 (570)
Q Consensus 536 ~~ErdaAr 543 (570)
+.+....+
T Consensus 501 ~~~l~~l~ 508 (652)
T COG2433 501 ERKLAELR 508 (652)
T ss_pred HHHHHHHH
Confidence 77665554
No 206
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=61.67 E-value=1.5e+02 Score=32.90 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 008304 518 MEKLQEEIKVQLVELESFRNEYANVRLECN 547 (570)
Q Consensus 518 mErLq~Ei~aQl~~LEs~~~ErdaArle~~ 547 (570)
+++.++++..+..+|+....|+...+.+..
T Consensus 106 Le~ke~~L~~re~eLee~~~e~~~~~~~~~ 135 (514)
T TIGR03319 106 LEKKEKELSNKEKNLDEKEEELEELIAEQR 135 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444433333
No 207
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=61.65 E-value=66 Score=32.87 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=7.3
Q ss_pred HHHHHHHhhhhhhhhh
Q 008304 552 RAKILASEVIGLEEKV 567 (570)
Q Consensus 552 Rak~LAaEVV~LEEk~ 567 (570)
+.+.|-+++-.|+.++
T Consensus 243 ~v~~l~~~i~~l~~~i 258 (362)
T TIGR01010 243 QVPSLQARIKSLRKQI 258 (362)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3344444444444444
No 208
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=61.50 E-value=1.7e+02 Score=30.36 Aligned_cols=36 Identities=8% Similarity=0.288 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (570)
Q Consensus 496 ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~ 531 (570)
+=..|..+|-..--.|-+|+.+++.|+++|+.++..
T Consensus 269 ~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~ 304 (444)
T TIGR03017 269 KLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKK 304 (444)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777777777788888888877665543
No 209
>PF13514 AAA_27: AAA domain
Probab=61.46 E-value=95 Score=36.83 Aligned_cols=109 Identities=19% Similarity=0.246 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA-----ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~-----ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs 534 (570)
+.|..|+..|..+..+.-.++..++.-++-.+.|.- ++..--+.-.++...+.....++.+++.++......++.
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~ 321 (1111)
T PF13514_consen 242 ERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELAELEAELRA 321 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555544454444444443333221 223344566667777888888899999988888888777
Q ss_pred hHHHHH--------HHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304 535 FRNEYA--------NVRLECNAADERAKILASEVIGLEEKVR 568 (570)
Q Consensus 535 ~~~Erd--------aArle~~aA~ERak~LAaEVV~LEEk~l 568 (570)
+..+.. .+..--..+.++.+.|..+.-.|++++.
T Consensus 322 ~~~~lg~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~ 363 (1111)
T PF13514_consen 322 LLAQLGPDWDEEDLEALDPSLAARERIRELLQEREQLEQALA 363 (1111)
T ss_pred HHHhcCCCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 765554 1111223556778888888877776654
No 210
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=60.98 E-value=55 Score=32.33 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq 522 (570)
|.--|+++|.+=-.+...+...+..++.|..+.+.|..........+.....+-.++.
T Consensus 22 l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~ 79 (264)
T PF06008_consen 22 LLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLN 79 (264)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444666666555555555555555555544444444444443333333333333333
No 211
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=60.80 E-value=54 Score=33.43 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=47.7
Q ss_pred HHHHHHhhhHHHHHHHHhHH-HH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHH
Q 008304 490 SESLAAENSSLTDSYNQQRS-VV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555 (570)
Q Consensus 490 aEsLA~ENsALTdryNqQ~~-~v-----------~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~ 555 (570)
++.+|.+...+.+.|+.|-. .+ ..-.+...+|++|+.....+|+..+--|+.+-.++..|.++++.
T Consensus 79 t~~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~~Kk~~e~~~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~ar~K~~~ 156 (264)
T cd07654 79 LDAVAQSRQNRCEAYRRYISEPAKTGRSAKEQQLKKCTEQLQRAQAEVQQTVRELSKSRKTYFEREQVAHLAREKAAD 156 (264)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 56666667777777764322 22 22344557889999999999999999999888888888777664
No 212
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=60.77 E-value=86 Score=38.15 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=30.5
Q ss_pred HHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 490 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (570)
Q Consensus 490 aEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~ 531 (570)
.+.+.+.|-+|.++-|+|+..+++|..+-++.++.+.-..-.
T Consensus 260 i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~ 301 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQA 301 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567799999999999999999987777766554433333
No 213
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=60.69 E-value=1.5e+02 Score=36.30 Aligned_cols=75 Identities=21% Similarity=0.297 Sum_probs=41.4
Q ss_pred HHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 008304 490 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLE 564 (570)
Q Consensus 490 aEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LE 564 (570)
.+..-..++++..+++.--.++++++++.+..-.||+.-...|..++.|+-.+.-+..++--+-+.+=.+|=.||
T Consensus 304 i~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~ 378 (1074)
T KOG0250|consen 304 IEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLE 378 (1074)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777777777666666666665555555554444444444444334444333333333
No 214
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=60.65 E-value=78 Score=26.98 Aligned_cols=17 Identities=35% Similarity=0.673 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008304 464 ALEQHIEDLTQEKFALQ 480 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLq 480 (570)
-.+++|++|..|=|.|-
T Consensus 4 Eqe~~i~~L~KENF~LK 20 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLK 20 (75)
T ss_pred HHHHHHHHHHHhhhhHH
Confidence 46899999999998873
No 215
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=60.52 E-value=98 Score=34.76 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=35.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHH
Q 008304 504 YNQQRSVVNQLKSEMEKLQEEIK---VQLVELESFRNEYANVRLECNAADERAKILAS 558 (570)
Q Consensus 504 yNqQ~~~v~qLk~dmErLq~Ei~---aQl~~LEs~~~ErdaArle~~aA~ERak~LAa 558 (570)
|.......+.|+.+++++++++. .+..++..+..|++.++.-+...-+|-+.+..
T Consensus 347 ~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~ 404 (754)
T TIGR01005 347 ADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAAS 404 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555554443 34677778888888888888888888776543
No 216
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=60.51 E-value=1.4e+02 Score=31.57 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=9.3
Q ss_pred HHHHHhhhHHHHHHHHhHH
Q 008304 491 ESLAAENSSLTDSYNQQRS 509 (570)
Q Consensus 491 EsLA~ENsALTdryNqQ~~ 509 (570)
++|...+.+...+|.++-.
T Consensus 55 ~~~~~~~~~~~~~~~~~la 73 (332)
T TIGR01541 55 KKLAEATASIRAQNKRQLD 73 (332)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444433
No 217
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=60.33 E-value=71 Score=36.89 Aligned_cols=78 Identities=14% Similarity=0.235 Sum_probs=51.6
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008304 448 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 525 (570)
Q Consensus 448 ~~~~~F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei 525 (570)
+.|++=|-..+..=..+||.|++-|..+|-.-+..|+..++--+.|.+.-+.|.+||-+-...-+.|...++++-+.+
T Consensus 546 ~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 546 KVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444656666667788899888888888777777777777777766666666666665555555555555444433
No 218
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=60.00 E-value=1.4e+02 Score=31.86 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALT-dryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~ 536 (570)
+-.++|+.++..|++|--.|++...+.++--|.+..+-+++- +-|-.=..++|+=|.+|++|++.|..-.......+
T Consensus 137 ~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~~~~ 214 (342)
T PF06632_consen 137 DANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEEEKSPK 214 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccccchh
Confidence 345667777777777777777777777777777776655543 33444566777777777777766555444333333
No 219
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=59.60 E-value=1.6e+02 Score=34.22 Aligned_cols=24 Identities=38% Similarity=0.453 Sum_probs=15.3
Q ss_pred ccccccccccceeeecCCCCCCCCC
Q 008304 51 LHDQHHLEADRVRVTDLDGAGTSDG 75 (570)
Q Consensus 51 ~~~~~~le~~~vrvtd~dgag~sdg 75 (570)
+.+.+.|..+.-++.|.+|. +.|+
T Consensus 120 l~~~~~l~~~i~~~id~~g~-i~d~ 143 (771)
T TIGR01069 120 LITLPPLENDIIACIDDDGK-VKDG 143 (771)
T ss_pred CCCcHHHHHHHHHHhCCCCE-ECCC
Confidence 33456677777788888773 3344
No 220
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=59.57 E-value=2.1e+02 Score=31.74 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=46.8
Q ss_pred HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 008304 493 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLE 564 (570)
Q Consensus 493 LA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LE 564 (570)
|-.+...+....|.+....+++++.++.+.+++..-....+.+.......+.+-..|.++.+.+...+-.+.
T Consensus 360 Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 360 LEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566666677666777777777777776666666666666667767666667666666655544444
No 221
>PF15294 Leu_zip: Leucine zipper
Probab=59.56 E-value=1.9e+02 Score=30.48 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHH----------------HHHHHHHHHHHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS----------------VVNQLKSEMEKLQEEIK 526 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~----------------~v~qLk~dmErLq~Ei~ 526 (570)
+.|..-|++|..|=-.|.--|..-...+-..++|...|...-|.... .+..|...|+.+..|+.
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~e 207 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELE 207 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHH
Confidence 67888899999888888888888888888888888888887776655 24556777777777766
Q ss_pred HHHHHhh----hhHHHHHHHHhhhhhHHHH
Q 008304 527 VQLVELE----SFRNEYANVRLECNAADER 552 (570)
Q Consensus 527 aQl~~LE----s~~~ErdaArle~~aA~ER 552 (570)
..+..++ ++......+.-+.-..++.
T Consensus 208 k~~~d~~~~~k~L~e~L~~~KhelL~~Qeq 237 (278)
T PF15294_consen 208 KALQDKESQQKALEETLQSCKHELLRVQEQ 237 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 6555443 4455555555555444444
No 222
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=59.51 E-value=1.8e+02 Score=34.68 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS----EMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~----dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
||..++|..+.--.||---+.-.++.|++.+||-.|++-|=+.-..+-+.|. ++.++.-|+..-|+.+++++--..
T Consensus 439 Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe 518 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLE 518 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3445555555555555555566677788889999988888777776665543 567777777777777776663333
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 541 NVRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 541 aArle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
+|..|-..-.=--|.==|||--|.|=.
T Consensus 519 ~sekEN~iL~itlrQrDaEi~RL~eLt 545 (861)
T PF15254_consen 519 ASEKENQILGITLRQRDAEIERLRELT 545 (861)
T ss_pred HHHhhhhHhhhHHHHHHHHHHHHHHHH
Confidence 333332221111222235555555533
No 223
>PRK14154 heat shock protein GrpE; Provisional
Probab=59.35 E-value=37 Score=33.99 Aligned_cols=36 Identities=11% Similarity=0.288 Sum_probs=22.2
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (570)
Q Consensus 492 sLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~a 527 (570)
.|..+...|.++|-+.......+++.+++-.++++.
T Consensus 63 ~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~ 98 (208)
T PRK14154 63 RMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIK 98 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777766666666666666655555433
No 224
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=59.14 E-value=2.5e+02 Score=32.72 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQR 481 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqR 481 (570)
+..+|++.+.+|-.++-.+.+
T Consensus 233 e~e~l~~~~~el~~~~~~~~~ 253 (908)
T COG0419 233 EIEALEERLAELEEEKERLEE 253 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544
No 225
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=58.95 E-value=1.2e+02 Score=33.92 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=13.5
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (570)
Q Consensus 492 sLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~a 527 (570)
.|+.....+. ++++......++..+++++++++..
T Consensus 44 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (475)
T PRK10361 44 ELSAAKQQIT-QSEHWRAECELLNNEVRSLQSINTS 78 (475)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343333333 3333333333344444444433333
No 226
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=58.71 E-value=48 Score=30.39 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=34.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 499 ALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
+...+.|.+...|..+.++|..|+.|+++|.--|+.+-...+
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~ 91 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQ 91 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888999999999999988888877655443
No 227
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=58.57 E-value=46 Score=40.89 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=6.2
Q ss_pred hHHHHHhhhhh
Q 008304 92 NKALKLAQQSQ 102 (570)
Q Consensus 92 ~~~i~~~~~s~ 102 (570)
--|.||.++-+
T Consensus 102 VYAMK~lnK~e 112 (1317)
T KOG0612|consen 102 VYAMKILNKWE 112 (1317)
T ss_pred chhHHHhhHHH
Confidence 34666666633
No 228
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=58.54 E-value=1.6e+02 Score=30.93 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 517 dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
+.+...+.+.....+|+...+|.+.+..+..++.+|-..++.-...||.+-
T Consensus 194 eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~ 244 (269)
T PF05278_consen 194 EKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMES 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555566666666666666666666666666666666666553
No 229
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=58.26 E-value=1.1e+02 Score=32.14 Aligned_cols=109 Identities=21% Similarity=0.193 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh------
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES------ 534 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs------ 534 (570)
|=++|...||=|+.+=+.|+-.|...++-.+....|-+.+-+.+-.....+..|+++|.++.+-|+-+.++|-.
T Consensus 106 ek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd 185 (302)
T PF09738_consen 106 EKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGD 185 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCc
Confidence 34455555555555555555555555544445555555555566666666666666666666666666555543
Q ss_pred ---------------hHHHHHHHHhhh--hhHHHHHHHHHHhhhhhhhhhhc
Q 008304 535 ---------------FRNEYANVRLEC--NAADERAKILASEVIGLEEKVRS 569 (570)
Q Consensus 535 ---------------~~~ErdaArle~--~aA~ERak~LAaEVV~LEEk~lq 569 (570)
+.-|-..+--.+ ..-|.|-|.|+-|==.|-++|.+
T Consensus 186 ~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~k 237 (302)
T PF09738_consen 186 TSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRK 237 (302)
T ss_pred cccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222 23456777777766666555544
No 230
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=58.10 E-value=42 Score=26.61 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008304 514 LKSEMEKLQEEIKVQLVELESFRNEYANV 542 (570)
Q Consensus 514 Lk~dmErLq~Ei~aQl~~LEs~~~ErdaA 542 (570)
++.++.+|+.+++....+.+.++.|.+..
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333344444444443
No 231
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=57.90 E-value=2.2e+02 Score=29.65 Aligned_cols=67 Identities=27% Similarity=0.316 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl 529 (570)
.+.+++|.+-..||-.|...++|.+...+.-++.|..|...+....|.. ...++.+|.|=+|++.+-
T Consensus 21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~----~~~k~KLE~LCRELQk~N 87 (309)
T PF09728_consen 21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKA----ILAKSKLESLCRELQKQN 87 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999998887743 455666666655555544
No 232
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=57.87 E-value=1.5e+02 Score=26.89 Aligned_cols=98 Identities=18% Similarity=0.292 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAA-------ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~-------ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LE 533 (570)
+...|..-++++...--.++..|..+.+++...-. -+.+.+...+.-...+..++.++..|+.++......|+
T Consensus 11 e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 11 ELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554443211 12333444444444455555555555555555444444
Q ss_pred hhH----HHHHHHHhhhhhHHHHHHHHHH
Q 008304 534 SFR----NEYANVRLECNAADERAKILAS 558 (570)
Q Consensus 534 s~~----~ErdaArle~~aA~ERak~LAa 558 (570)
... .++.....+...+..|..-|..
T Consensus 91 ~~e~sw~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 91 ESEASWEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 4455555555566666555543
No 233
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=57.82 E-value=1.9e+02 Score=32.69 Aligned_cols=60 Identities=23% Similarity=0.304 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHH----HHHHhhhhhhhhhhc
Q 008304 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK----ILASEVIGLEEKVRS 569 (570)
Q Consensus 510 ~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak----~LAaEVV~LEEk~lq 569 (570)
.+.+|+.++++++.|++.+.-....+..+-+.-+.-...-.||-+ .+=..+-.|+|+++-
T Consensus 383 k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 383 KLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555544444444444432 223345667777654
No 234
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=57.73 E-value=1.4e+02 Score=26.73 Aligned_cols=35 Identities=31% Similarity=0.379 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLA 494 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA 494 (570)
..+..|++.|+.|+.+.-.|...+..-+..-++|-
T Consensus 13 ~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 13 AQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777777776666666555553
No 235
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=57.72 E-value=1.8e+02 Score=30.84 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=35.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304 501 TDSYNQQRSVVNQLKSEMEKLQEEIK---VQLVELESFRNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 501 TdryNqQ~~~v~qLk~dmErLq~Ei~---aQl~~LEs~~~ErdaArle~~aA~ERak~L 556 (570)
..++.....++++|+++++++++++. ....++..+..|++.++.-+....+|-...
T Consensus 323 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea 381 (498)
T TIGR03007 323 EAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESA 381 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555666666655544 345567777888888888888877776553
No 236
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=57.58 E-value=2.5e+02 Score=29.50 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhh
Q 008304 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK 566 (570)
Q Consensus 509 ~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk 566 (570)
.+.....++|+-.+.|+...+.+|.....|+..++...++..+|--.|=.|-.-|+..
T Consensus 193 ~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~ 250 (269)
T PF05278_consen 193 EEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKT 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666666666666677777777777777777777777666666665555553
No 237
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=57.54 E-value=1.1e+02 Score=27.10 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 467 QHIEDLTQEKFALQRSLEASRALSESL 493 (570)
Q Consensus 467 QhIeDLT~EKfaLqRaLeks~~laEsL 493 (570)
+-|+.|..|.-+...+++++..+.+.|
T Consensus 25 ~~i~~L~a~n~~q~~tI~qq~~~~~~L 51 (110)
T PF10828_consen 25 QRIDRLRAENKAQAQTIQQQEDANQEL 51 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777666665555
No 238
>PRK14143 heat shock protein GrpE; Provisional
Probab=57.38 E-value=47 Score=33.70 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=27.9
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008304 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528 (570)
Q Consensus 491 EsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQ 528 (570)
+.|..+...|.++|-+.......+++.+++=+.+++.+
T Consensus 77 ~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~ 114 (238)
T PRK14143 77 ESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQ 114 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777888999888888888887777766655443
No 239
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=57.23 E-value=1.4e+02 Score=34.48 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHH
Q 008304 486 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 551 (570)
Q Consensus 486 s~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~E 551 (570)
+++..+.|++... .|+.....+.+|.....-.+++|+....+++.++.+...+...|-.-++
T Consensus 208 ~~~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~ 269 (670)
T KOG0239|consen 208 AQEERRVLADSLG----NYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTR 269 (670)
T ss_pred hHHHHHHHHHHhh----hhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433 5666666666666665555555555555555555554444444443333
No 240
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=57.15 E-value=20 Score=30.95 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--h--hhhhHHHHHHHHHHhhhhhhhhhhcC
Q 008304 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR--L--ECNAADERAKILASEVIGLEEKVRSL 570 (570)
Q Consensus 509 ~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr--l--e~~aA~ERak~LAaEVV~LEEk~lqL 570 (570)
..-.+|+.|+.+||.+++-+.....++..=..... + ........++.|-.||..||+-|..|
T Consensus 8 ~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~L 73 (88)
T PF14389_consen 8 ERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKL 73 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34467888999888888877766666653222221 1 12355667888887777777766543
No 241
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=57.06 E-value=2.3e+02 Score=33.02 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=13.7
Q ss_pred ccccccccceeeecCCCCCCCCC
Q 008304 53 DQHHLEADRVRVTDLDGAGTSDG 75 (570)
Q Consensus 53 ~~~~le~~~vrvtd~dgag~sdg 75 (570)
+.+.|..+.-++.|.+|. +.||
T Consensus 127 ~~~~l~~~i~~~id~~g~-i~d~ 148 (782)
T PRK00409 127 TLPELEQEIHNCIDEEGE-VKDS 148 (782)
T ss_pred CcHHHHHHHHHHhCCCCE-ECCC
Confidence 445566667777777663 4555
No 242
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=57.04 E-value=1.4e+02 Score=29.30 Aligned_cols=95 Identities=17% Similarity=0.242 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRAL----SESLA-AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~l----aEsLA-~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LE 533 (570)
..+-+.|++.|++...+--.+++.|++-..- .+.++ .--+.|..+.++.-..+.+++.++..+..++..+....+
T Consensus 37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~ 116 (240)
T PF12795_consen 37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPE 116 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 4566778888888888888888887766432 11111 012456667777777777777777777777777777777
Q ss_pred hhHHHHHHHHhhhhhHHHHH
Q 008304 534 SFRNEYANVRLECNAADERA 553 (570)
Q Consensus 534 s~~~ErdaArle~~aA~ERa 553 (570)
.+......++.....+..+-
T Consensus 117 ~aq~~l~~~~~~l~ei~~~L 136 (240)
T PF12795_consen 117 RAQQQLSEARQRLQEIRNQL 136 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77766666666665555543
No 243
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=56.49 E-value=1.1e+02 Score=28.28 Aligned_cols=64 Identities=22% Similarity=0.222 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (570)
Q Consensus 468 hIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~ 531 (570)
.++.|+.++-+|.|-|+...+-.+.|-.|-..+...|-.-...+.+|+..+..++++++.+.-.
T Consensus 21 ~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 21 DYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566777777777777766666666666666666666666666666666666666665555444
No 244
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=56.46 E-value=3e+02 Score=30.08 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=10.3
Q ss_pred chhhHHHHHHHHHHHHHH
Q 008304 458 HNEDFAALEQHIEDLTQE 475 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~E 475 (570)
+.+....|++.|+.-.+|
T Consensus 271 ~~~~~~~l~~~L~~q~~e 288 (582)
T PF09731_consen 271 KEEEEEELERALEEQREE 288 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556666666665555
No 245
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=56.03 E-value=1.2e+02 Score=25.21 Aligned_cols=74 Identities=23% Similarity=0.370 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEAS----RALSESLAAENSSLTDSYNQQRSVVNQLKSEM-EKLQEEIKVQLVELESFR 536 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks----~~laEsLA~ENsALTdryNqQ~~~v~qLk~dm-ErLq~Ei~aQl~~LEs~~ 536 (570)
+.|+..|+.|....-.+++.+..- ..+.++....-..+...|......+.+.+..| .+|..+-+..+..|....
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~ 81 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQL 81 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777776666666666543 33444455555666777777766666544332 334444333333333333
No 246
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=55.94 E-value=2.2e+02 Score=33.65 Aligned_cols=74 Identities=24% Similarity=0.316 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 008304 474 QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN 547 (570)
Q Consensus 474 ~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~ 547 (570)
..|..|+.-|.-...-...++.||.+|++...+....|.+|.+...+.+.||.+....|++..-|....+-+..
T Consensus 85 ~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~ 158 (769)
T PF05911_consen 85 KIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELH 158 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777889999999999999999999999999999999999999999998777666655543
No 247
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=55.80 E-value=1.8e+02 Score=30.69 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=9.3
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhh
Q 008304 525 IKVQLVELESFRNEYANVRLECNA 548 (570)
Q Consensus 525 i~aQl~~LEs~~~ErdaArle~~a 548 (570)
.+.++..++..-.+.|++|.....
T Consensus 128 l~~~l~~~~~~y~~~d~~q~dw~~ 151 (332)
T TIGR01541 128 LNEALAELHAYYAAEDALQGDWLA 151 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 333333333333444444444333
No 248
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=55.45 E-value=1.5e+02 Score=28.99 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhHHHH
Q 008304 482 SLEASRALSESLAAENSSLTDSYNQQRSVV 511 (570)
Q Consensus 482 aLeks~~laEsLA~ENsALTdryNqQ~~~v 511 (570)
-|++++..++.|..|+..||..|+.-...+
T Consensus 89 QLEq~~~~N~~L~~dl~klt~~~~~l~~eL 118 (182)
T PF15035_consen 89 QLEQARKANEALQEDLQKLTQDWERLRDEL 118 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666665544333
No 249
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=55.42 E-value=93 Score=37.69 Aligned_cols=19 Identities=26% Similarity=0.414 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008304 510 VVNQLKSEMEKLQEEIKVQ 528 (570)
Q Consensus 510 ~v~qLk~dmErLq~Ei~aQ 528 (570)
...+|+.++++|+.+...+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~ 210 (1123)
T PRK11448 192 KQQELEAQLEQLQEKAAET 210 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5556666666666555443
No 250
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=55.16 E-value=1.1e+02 Score=34.51 Aligned_cols=72 Identities=19% Similarity=0.336 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008304 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~ 536 (570)
.-+|..+++-..++|-++.-.|..+..-...|-+|-+.-.+.|=.|- +-|.+-|..|...+..|.-+.+++|
T Consensus 443 c~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QL---s~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 443 CRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQL---SMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555555555555555555555555555555555555443 3334455555555555554444444
No 251
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=55.02 E-value=70 Score=27.83 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=48.6
Q ss_pred HhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhh
Q 008304 495 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 565 (570)
Q Consensus 495 ~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEE 565 (570)
.|-..++..|+++...+..+..++.-|++. +.-+..|...|.+++-+|+--...|-.|+..|--
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k-------~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQK-------KLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455677888888888888888877777754 3445578888888888888888888888877643
No 252
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=54.92 E-value=1.4e+02 Score=33.79 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLE 484 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLe 484 (570)
++...|+..|++|..|.-.|.+.++
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~ 527 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELE 527 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544444443
No 253
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=54.85 E-value=60 Score=29.34 Aligned_cols=51 Identities=25% Similarity=0.326 Sum_probs=35.9
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhh
Q 008304 498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 548 (570)
Q Consensus 498 sALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~a 548 (570)
-.|.+++.+--..+.+|-.+|+.|+.++..-+-+...|+.|-+..|.....
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777777777777777777766655443
No 254
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=54.79 E-value=26 Score=33.44 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHH
Q 008304 513 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555 (570)
Q Consensus 513 qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~ 555 (570)
+|..+-.+|++||..-..+++.++.|+|+.+..|.++.--+..
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~~ 120 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAVS 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4556666677777777777777788888888888777666553
No 255
>PRK14160 heat shock protein GrpE; Provisional
Probab=54.72 E-value=64 Score=32.38 Aligned_cols=50 Identities=30% Similarity=0.229 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhh
Q 008304 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV 560 (570)
Q Consensus 511 v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEV 560 (570)
+.+|+.+++.|+.+++...-.+--+.+|++|+|-+...-.++++..|.+=
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~ 112 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACED 112 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333344444666666666555555555555443
No 256
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=54.60 E-value=1.8e+02 Score=28.54 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008304 474 QEKFALQRSLEASRALSESLAAENSSL 500 (570)
Q Consensus 474 ~EKfaLqRaLeks~~laEsLA~ENsAL 500 (570)
.|.-.|++.+++-+.-.+.|..||..|
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 257
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.50 E-value=1.9e+02 Score=30.66 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=44.5
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH-HHHHHHH
Q 008304 450 QHGFYSTKHNEDFAALEQHIEDLTQEKFAL----QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE-MEKLQEE 524 (570)
Q Consensus 450 ~~~F~s~~~~ddFAaLqQhIeDLT~EKfaL----qRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~d-mErLq~E 524 (570)
|..|-.....|-|-++++.-|++.+-|-.| |+-|++-..|.+--|+ ..|| .+|+.+-++ +++|+.+
T Consensus 212 f~P~~D~~~~dh~V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad------~e~~---~~~ek~Hke~v~qL~~k 282 (305)
T KOG3990|consen 212 FPPFGDRDPGDHMVKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD------KEYQ---KELEKKHKERVQQLQKK 282 (305)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc------hhHH---HHHHHHHHHHHHHHHHH
Confidence 555655555666777777666665544444 3456666666665554 2233 344444444 6777776
Q ss_pred HHHHHHHhhhhH
Q 008304 525 IKVQLVELESFR 536 (570)
Q Consensus 525 i~aQl~~LEs~~ 536 (570)
++.-+-+++.++
T Consensus 283 ~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 283 KEESLKAIAQLR 294 (305)
T ss_pred HHHHHHHHHHHh
Confidence 666555555554
No 258
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=54.44 E-value=51 Score=29.29 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=35.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 008304 503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 545 (570)
Q Consensus 503 ryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle 545 (570)
+.++....|..|+.++.++.+++++-..+..+.++|-.+|-++
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~R 67 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTR 67 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888889999999999999999999999888888554444433
No 259
>PRK14147 heat shock protein GrpE; Provisional
Probab=54.37 E-value=38 Score=32.64 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=8.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH
Q 008304 537 NEYANVRLECNAADERAKILAS 558 (570)
Q Consensus 537 ~ErdaArle~~aA~ERak~LAa 558 (570)
+|.+|+|-+...-.++++..|.
T Consensus 46 Ad~eN~rkR~~kE~e~~~~~a~ 67 (172)
T PRK14147 46 ADLENQRKRIARDVEQARKFAN 67 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433344333333
No 260
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=54.20 E-value=2.5e+02 Score=28.43 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~E 538 (570)
.+++..|....+-+..-.-.|.+.|.....++++|+++...|..=+-.-.+...++.+-+++-++.+..-+..|..+..=
T Consensus 55 ~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~~~L~~lL~~~~~~a~~~~~~l~~n~~~L~~~~~~L~p~~~l 134 (267)
T PF11887_consen 55 REDLRNLADVADTYADAAPDLLDALDNLTTTSRTLVDQRQQLDALLLSATGLADTGTDFLADNRDNLIRALDDLRPTTDL 134 (267)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45566666666677777777777777777777788877777777777777777777777777777777666666665544
Q ss_pred HHHHHhhhh
Q 008304 539 YANVRLECN 547 (570)
Q Consensus 539 rdaArle~~ 547 (570)
.+.+.-+..
T Consensus 135 L~~~~p~l~ 143 (267)
T PF11887_consen 135 LAKYSPELP 143 (267)
T ss_pred HHHhCchHH
Confidence 444333333
No 261
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=53.89 E-value=1.4e+02 Score=33.19 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALT-dryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
+.|++..+|+|.---.|--+-+|-++-.++...+...+- ..|-++..+|++|+.++.+|++.++....+-...+.++|
T Consensus 2 ~~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd~v~~~k~~~~~~d 80 (428)
T PF00846_consen 2 STLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLADRVAAGKQSAKPVD 80 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 456777777777666666666666665555555555443 346677889999999999999998876665554444433
No 262
>PRK11546 zraP zinc resistance protein; Provisional
Probab=53.63 E-value=1.8e+02 Score=27.97 Aligned_cols=72 Identities=24% Similarity=0.267 Sum_probs=42.0
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008304 451 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASR-ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 451 ~~F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~-~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl 529 (570)
..+|..--.+.-+++|...++--.+=..|...|-..+ +|.--|+..|. -...|.+|..||..|+.++..++
T Consensus 38 ~~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~p--------D~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 38 QQNAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPP--------DSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456566677777777777776666666655554333 33333333332 34556777777777776666555
Q ss_pred H
Q 008304 530 V 530 (570)
Q Consensus 530 ~ 530 (570)
+
T Consensus 110 ~ 110 (143)
T PRK11546 110 V 110 (143)
T ss_pred H
Confidence 5
No 263
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=53.49 E-value=79 Score=33.71 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=17.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRA 488 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~ 488 (570)
-...+..|++.++++..+.-.|.+.|.+-..
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455566666666665555555555544444
No 264
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=53.48 E-value=48 Score=26.35 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008304 478 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (570)
Q Consensus 478 aLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~E 524 (570)
|=.+-=++-...++.|..+...|....-.....+..|+.++..|..+
T Consensus 16 AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 16 AARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444445555555555555544444444555555555555544
No 265
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=53.32 E-value=2.3e+02 Score=27.84 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHH
Q 008304 478 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA 557 (570)
Q Consensus 478 aLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LA 557 (570)
.+...|+++.+=++.+......|-.....-+..+..|.-..+++.+......-.+..|..-+..|..++..|--+...|-
T Consensus 124 ~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le 203 (237)
T PF00261_consen 124 VLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLE 203 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555554444444444555555666666666666666666666
Q ss_pred Hhhhhhhhhh
Q 008304 558 SEVIGLEEKV 567 (570)
Q Consensus 558 aEVV~LEEk~ 567 (570)
.+|=.||+.+
T Consensus 204 ~~id~le~eL 213 (237)
T PF00261_consen 204 KEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 266
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=52.98 E-value=2.3e+02 Score=36.63 Aligned_cols=107 Identities=24% Similarity=0.275 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------Hhhhh
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV-------ELESF 535 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~-------~LEs~ 535 (570)
-.|+|-.++++.++-.+.-.+...+.=-+++-.++..|...+=+-+..+.+|++.|..++.+-+.-+- +++.+
T Consensus 62 ~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l 141 (1822)
T KOG4674|consen 62 LRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEAL 141 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777766766666666666777777777777777777777777776644433333 33333
Q ss_pred HHHHHHHHhhh-------hhHHHHHHHHHHhhhhhhhhhhc
Q 008304 536 RNEYANVRLEC-------NAADERAKILASEVIGLEEKVRS 569 (570)
Q Consensus 536 ~~ErdaArle~-------~aA~ERak~LAaEVV~LEEk~lq 569 (570)
..|.......| -++..|-+...++-|.++-++-+
T Consensus 142 ~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~r 182 (1822)
T KOG4674|consen 142 ESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEER 182 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333 23455666666666666655543
No 267
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=52.82 E-value=87 Score=34.64 Aligned_cols=48 Identities=33% Similarity=0.461 Sum_probs=38.0
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008304 452 GFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL 500 (570)
Q Consensus 452 ~F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsAL 500 (570)
+|....-+.+|.+|.-.|++|+.+|..|+|+|+. .++-.+++.|.-++
T Consensus 83 ~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~-~~~P~~ia~eCL~~ 130 (421)
T KOG2685|consen 83 NFWKGELDRELEDLAAEIDDLLHEKRRLERALNA-LALPLSIAEECLAH 130 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence 3566667889999999999999999999999874 45556777777665
No 268
>PRK14158 heat shock protein GrpE; Provisional
Probab=52.65 E-value=63 Score=31.95 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhh
Q 008304 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV 560 (570)
Q Consensus 512 ~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEV 560 (570)
..|+.+++.|+.++....-.+--+.+|.+|+|-+...-.+.++..|.+-
T Consensus 43 ~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~ 91 (194)
T PRK14158 43 KELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNES 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333344444555555555555555555554443
No 269
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=52.18 E-value=1.2e+02 Score=25.74 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHH
Q 008304 519 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA 557 (570)
Q Consensus 519 ErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LA 557 (570)
++|++|=..-...++++..||+..+..-..|..|..+|-
T Consensus 17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI 55 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMI 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444555555555555555554443
No 270
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=52.12 E-value=57 Score=29.82 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=34.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 008304 498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN 547 (570)
Q Consensus 498 sALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~ 547 (570)
..|.+++.+-...+.+|-.+|+.|++++..-+-+...++.|-+..|....
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777665554443
No 271
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=51.87 E-value=2.5e+02 Score=27.67 Aligned_cols=82 Identities=12% Similarity=0.195 Sum_probs=62.0
Q ss_pred HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 488 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 488 ~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
.-.+.|.-||-.|-.-.-.|...++...+.=..|.+-|..+.-++-.++..+-+++..+.++.-+-+-.-+|+.-+++.+
T Consensus 26 ~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l 105 (194)
T PF15619_consen 26 RKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDEL 105 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777888888777777777877777777777777777788888888888888888877777777777777777665
Q ss_pred hc
Q 008304 568 RS 569 (570)
Q Consensus 568 lq 569 (570)
-.
T Consensus 106 ~~ 107 (194)
T PF15619_consen 106 KH 107 (194)
T ss_pred HH
Confidence 43
No 272
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=51.61 E-value=2.5e+02 Score=27.67 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008304 472 LTQEKFALQRSLEASRALSESLA 494 (570)
Q Consensus 472 LT~EKfaLqRaLeks~~laEsLA 494 (570)
|....-.+-+.+.+...+++.|+
T Consensus 183 l~~~~~~i~~ll~~l~~l~~~l~ 205 (291)
T TIGR00996 183 LNARDGDIGALIDNLNRVLDVLA 205 (291)
T ss_pred HHhcchhHHHHHHHHHHHHHHHH
Confidence 33333333334444444444443
No 273
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=51.46 E-value=1.1e+02 Score=34.28 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 008304 471 DLTQEKFALQRSLEASRALSESLAAENSSLTDSY 504 (570)
Q Consensus 471 DLT~EKfaLqRaLeks~~laEsLA~ENsALTdry 504 (570)
.|.-+=-++.+.|+...+=++.|.+||+.|..|=
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333444555666666778888888886643
No 274
>PRK00106 hypothetical protein; Provisional
Probab=51.13 E-value=2.9e+02 Score=31.30 Aligned_cols=14 Identities=0% Similarity=-0.007 Sum_probs=5.1
Q ss_pred HHHHHhhhhHHHHH
Q 008304 527 VQLVELESFRNEYA 540 (570)
Q Consensus 527 aQl~~LEs~~~Erd 540 (570)
.+..+|+....+++
T Consensus 136 ~reeeLee~~~~~~ 149 (535)
T PRK00106 136 DKSKHIDEREEQVE 149 (535)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 275
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=50.72 E-value=2.6e+02 Score=31.60 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh----
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF---- 535 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~---- 535 (570)
.+...+.|-.+++++|+-+|.-.+.-.++..+.+..---.+..+++.-..++.++++.=+.|.....+-.-.|+-+
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~ 426 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEERE 426 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444445566666666666554443333333333333334555666666666666655555555544444443332
Q ss_pred HHHHHHHHhhhhhHHHHHHHH
Q 008304 536 RNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 536 ~~ErdaArle~~aA~ERak~L 556 (570)
+.++.+-....++-.|+-|-|
T Consensus 427 ~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 427 KEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 234444444555556655544
No 276
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.62 E-value=2.6e+02 Score=34.85 Aligned_cols=106 Identities=22% Similarity=0.275 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHH-----------HHHHHHHHHHHHHHHHHH
Q 008304 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVN-----------QLKSEMEKLQEEIKVQLV 530 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~-----------qLk~dmErLq~Ei~aQl~ 530 (570)
..-|+.-||..-.+|..+.-++++++..-+.+-.|++.|...-+.-...+. .++.+++.++.++.--+.
T Consensus 414 ~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~ 493 (1293)
T KOG0996|consen 414 IKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLK 493 (1293)
T ss_pred HHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 344556677777788888888888887777777777777666554433332 233344444444444444
Q ss_pred HhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 531 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 531 ~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
.+-.+++|.|-|+.+...--.|.-.+---|..|..++
T Consensus 494 ~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L 530 (1293)
T KOG0996|consen 494 QVNEARSELDVAESELDILLSRHETGLKKVEELKGKL 530 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555554444444444444444444443
No 277
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=50.62 E-value=1.2e+02 Score=30.38 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=45.8
Q ss_pred HHHHHHhhhHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304 490 SESLAAENSSLTDSYNQQ------------RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 490 aEsLA~ENsALTdryNqQ------------~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~L 556 (570)
++.+|.+...|.+.|+-+ ..+.....+...++++|+....-+|+..+-.|..+..++..|.+-.+..
T Consensus 79 t~~~a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~a 157 (241)
T cd07656 79 TKQESRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEA 157 (241)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666543 2223334556677888888888899999999988888877776655544
No 278
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=50.38 E-value=2.8e+02 Score=30.14 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=11.4
Q ss_pred HHHHHHHhhhhhHHHHHHH
Q 008304 537 NEYANVRLECNAADERAKI 555 (570)
Q Consensus 537 ~ErdaArle~~aA~ERak~ 555 (570)
...+.|..-...||+|-..
T Consensus 153 ~Dv~tA~alLksAD~rLa~ 171 (390)
T PRK10920 153 QDVTTAAALLKSADASLAD 171 (390)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 3445566666677776543
No 279
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=50.17 E-value=3.5e+02 Score=30.36 Aligned_cols=6 Identities=33% Similarity=0.445 Sum_probs=2.7
Q ss_pred HHHHhh
Q 008304 555 ILASEV 560 (570)
Q Consensus 555 ~LAaEV 560 (570)
.||.++
T Consensus 117 ~LA~~i 122 (475)
T PRK10361 117 NLANRI 122 (475)
T ss_pred HHHHHH
Confidence 444443
No 280
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=50.14 E-value=1.3e+02 Score=28.71 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008304 513 QLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (570)
Q Consensus 513 qLk~dmErLq~Ei~aQl~~LEs~~~ErdaA 542 (570)
.|+.+..+++.-+...-..++.++.|.++.
T Consensus 146 ~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~ 175 (184)
T PF05791_consen 146 NLKTDVDELQSILAGENGDIPQLQKQIENL 175 (184)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 333333344444444444444444433333
No 281
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=50.13 E-value=2.1e+02 Score=26.42 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-----------HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008304 468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY-----------NQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (570)
Q Consensus 468 hIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdry-----------NqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~ 536 (570)
+-.+|-.|=..+...+..=++++..+-.-.+.+..+. |...+...+=+.+.-+|+..|..+.++||-++
T Consensus 21 ~t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~ 100 (120)
T PF14931_consen 21 QTQELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELERLR 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555544444 44444444444555566667777777777777
Q ss_pred HHHHHHH
Q 008304 537 NEYANVR 543 (570)
Q Consensus 537 ~ErdaAr 543 (570)
.||+..+
T Consensus 101 ~E~~sL~ 107 (120)
T PF14931_consen 101 SEYESLQ 107 (120)
T ss_pred HHHHHHH
Confidence 7777654
No 282
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=49.90 E-value=2e+02 Score=26.06 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=17.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008304 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (570)
Q Consensus 500 LTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~ 536 (570)
+.+.|+.....+..+...++.+.+-...|....+.+.
T Consensus 133 ~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~ 169 (213)
T PF00015_consen 133 TSESLEEIAESVEEISDSIEEISESAEEQSESIEQIN 169 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHH
Confidence 3444444444555555555555544444444444444
No 283
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=49.68 E-value=75 Score=29.07 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 506 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNq 506 (570)
+.|+.|+|.|..|..|=-+|..-+..--+=+..|--||.-|-++..+
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999988887777766666666666666666666665553
No 284
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=49.59 E-value=3.2e+02 Score=31.28 Aligned_cols=46 Identities=30% Similarity=0.364 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008304 481 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (570)
Q Consensus 481 RaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~ 526 (570)
..|+.-..-.+.+.+|-..++..+-+....+.+.+...++|+++++
T Consensus 335 ~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 335 EQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444444444433
No 285
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=49.37 E-value=2.7e+02 Score=27.50 Aligned_cols=59 Identities=10% Similarity=0.145 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE 517 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~d 517 (570)
..=+..||+.|.|...-=-...+.|..++..++....-.......++.....|...+..
T Consensus 66 q~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~n 124 (188)
T PF05335_consen 66 QQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQAN 124 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555554433333444444444444444444444444444433333333333
No 286
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.34 E-value=59 Score=25.47 Aligned_cols=30 Identities=33% Similarity=0.498 Sum_probs=13.3
Q ss_pred HhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008304 495 AENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (570)
Q Consensus 495 ~ENsALTdryNqQ~~~v~qLk~dmErLq~E 524 (570)
.+=+.|...|+.....-..|+.+.+.|+.|
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~ae 34 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAE 34 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433
No 287
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=49.29 E-value=3.3e+02 Score=30.05 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhh
Q 008304 524 EIKVQLVELESFRNEYANVRLECNAADERAKILASEV 560 (570)
Q Consensus 524 Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEV 560 (570)
+++.++..++....+....+.+...+.++...+|.++
T Consensus 333 ~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~L 369 (563)
T TIGR00634 333 KIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVAL 369 (563)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444445555555555544444443
No 288
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.27 E-value=2e+02 Score=35.33 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Q 008304 466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV-------VNQLKSEMEKLQEEIKVQLVELE 533 (570)
Q Consensus 466 qQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~-------v~qLk~dmErLq~Ei~aQl~~LE 533 (570)
+.+++.|++.|..|+-.|...+. ... |-+.+.-.-+-.-.. +.++++.++++++|++-....++
T Consensus 651 ek~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~ 721 (1141)
T KOG0018|consen 651 EKEVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEID 721 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777666555544 222 444444444444333 34444444444544444444443
No 289
>PRK14162 heat shock protein GrpE; Provisional
Probab=49.26 E-value=76 Score=31.41 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=10.8
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHHH
Q 008304 491 ESLAAENSSLTDSYNQQRSVVNQLKS 516 (570)
Q Consensus 491 EsLA~ENsALTdryNqQ~~~v~qLk~ 516 (570)
+.|..+...|.++|=+.......+++
T Consensus 49 ~~l~~e~~elkd~~lR~~AEfeN~rk 74 (194)
T PRK14162 49 ADLKAKNKDLEDKYLRSQAEIQNMQN 74 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333333333
No 290
>PRK11281 hypothetical protein; Provisional
Probab=49.22 E-value=1.7e+02 Score=35.76 Aligned_cols=47 Identities=9% Similarity=0.043 Sum_probs=35.4
Q ss_pred HHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008304 490 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (570)
Q Consensus 490 aEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~ 536 (570)
.+.+++.|-.|.++.|+|+..+++|..+-++.++.++...-.+.+++
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~ 326 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIK 326 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577889999999999999999999888877766555444444333
No 291
>PRK14139 heat shock protein GrpE; Provisional
Probab=49.15 E-value=76 Score=31.20 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=13.2
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhh
Q 008304 534 SFRNEYANVRLECNAADERAKILASEV 560 (570)
Q Consensus 534 s~~~ErdaArle~~aA~ERak~LAaEV 560 (570)
-+.+|.+|+|-+...-.++++..|.+-
T Consensus 57 R~~AefeN~rKR~~kE~e~~~~~a~~~ 83 (185)
T PRK14139 57 RAKAETENVRRRAQEDVAKAHKFAIES 83 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555555555555555555444443
No 292
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=49.07 E-value=60 Score=25.72 Aligned_cols=38 Identities=32% Similarity=0.469 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEAS---RALSESLAAE 496 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks---~~laEsLA~E 496 (570)
..+.+.|+..|+++..|.-.|++.+++- .+-.|.+|.+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~ 63 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVARE 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4566677777777777776666666654 3444444443
No 293
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=48.38 E-value=2.5e+02 Score=33.17 Aligned_cols=91 Identities=16% Similarity=0.261 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHH-HHH---------HHHHHHHHHHhhh
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM-EKL---------QEEIKVQLVELES 534 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dm-ErL---------q~Ei~aQl~~LEs 534 (570)
|++-+++|+..+...--.|+.++.=++.|..+-+..-..+..|-..|.+|+.-+ ++. ..|...-+-.+..
T Consensus 174 Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~ 253 (739)
T PF07111_consen 174 LEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQH 253 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHH
Confidence 444444555555555555666666666666666666666666666666666665 333 2333444444555
Q ss_pred hHHHHHHHHhhhhhHHHHHHH
Q 008304 535 FRNEYANVRLECNAADERAKI 555 (570)
Q Consensus 535 ~~~ErdaArle~~aA~ERak~ 555 (570)
+..||++.++-+.--.=|...
T Consensus 254 L~edR~~L~~T~ELLqVRvqS 274 (739)
T PF07111_consen 254 LQEDRDALQATAELLQVRVQS 274 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666555544444444444
No 294
>PF13166 AAA_13: AAA domain
Probab=48.08 E-value=4e+02 Score=29.52 Aligned_cols=12 Identities=25% Similarity=0.218 Sum_probs=10.0
Q ss_pred ccceeeecCCCC
Q 008304 59 ADRVRVTDLDGA 70 (570)
Q Consensus 59 ~~~vrvtd~dga 70 (570)
...|+|.|.|.+
T Consensus 60 ~~~i~VFn~dfv 71 (712)
T PF13166_consen 60 LSSIRVFNSDFV 71 (712)
T ss_pred CCceEEeChHHH
Confidence 678889988887
No 295
>PRK14145 heat shock protein GrpE; Provisional
Probab=47.92 E-value=87 Score=31.13 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=7.1
Q ss_pred HHHHHHHhhhhhHHHHHHH
Q 008304 537 NEYANVRLECNAADERAKI 555 (570)
Q Consensus 537 ~ErdaArle~~aA~ERak~ 555 (570)
+|.+|+|.+...-.++++.
T Consensus 73 AEfeN~rkR~~kE~e~~~~ 91 (196)
T PRK14145 73 AEFENYRKRTEKEKSEMVE 91 (196)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 296
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=47.89 E-value=2.7e+02 Score=27.04 Aligned_cols=44 Identities=25% Similarity=0.211 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHH
Q 008304 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER 552 (570)
Q Consensus 509 ~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ER 552 (570)
.....+..++++++.....+...|+..+..|+++-.+...+...
T Consensus 100 ~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~ 143 (236)
T cd07651 100 QKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQ 143 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44455666778888888888888888888888777666655443
No 297
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=47.82 E-value=2.2e+02 Score=26.88 Aligned_cols=86 Identities=13% Similarity=0.278 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~E 538 (570)
.++|..|++++++...+--.+.-+|+. +-+.+.+--+.+.--.=...+.+..++.+.+||+.-.++-.-.++.++.=
T Consensus 7 ~~~~~~l~~~~e~~~~d~e~~~dtLe~---i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~y 83 (162)
T PF05565_consen 7 TDEYLELLELLEEGDLDEEAIADTLES---IEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEY 83 (162)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhh
Q 008304 539 YANVRLECN 547 (570)
Q Consensus 539 rdaArle~~ 547 (570)
...+-..++
T Consensus 84 L~~~m~~~g 92 (162)
T PF05565_consen 84 LLDAMEAAG 92 (162)
T ss_pred HHHHHHHcC
No 298
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=47.70 E-value=2.5e+02 Score=26.63 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LE 533 (570)
..-+..|...++.+...-+...+.+.+.-+..|... ....-|.....+-.+++++-++++-+..+...+.
T Consensus 106 ~~~~~ll~~il~~~~~~~~~~l~~l~~~l~~le~~~-----~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~ 175 (292)
T PF01544_consen 106 SSPEDLLYAILDEIVDDYFEVLEELEDELDELEDEL-----DDRPSNELLRELFDLRRELSRLRRSLSPLREVLQ 175 (292)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----THTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----ccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 445566777777777777777777777665555554 3444455566666777777777777776666663
No 299
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.61 E-value=1.4e+02 Score=34.73 Aligned_cols=84 Identities=23% Similarity=0.284 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHhhhHHHHHHHHhHHHHHHHHHHHH
Q 008304 468 HIEDLTQEKFALQRSLEASRALSES----------------------------LAAENSSLTDSYNQQRSVVNQLKSEME 519 (570)
Q Consensus 468 hIeDLT~EKfaLqRaLeks~~laEs----------------------------LA~ENsALTdryNqQ~~~v~qLk~dmE 519 (570)
-+|+.+..|-.|+..++..++-... |...-+-|+.+||+...+..++..+++
T Consensus 55 kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie 134 (660)
T KOG4302|consen 55 KVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIE 134 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777776654433 344567789999999999999999999
Q ss_pred HHHHHHHHH---------------HHHhhhhHHHHHHHHhhhhhHHH
Q 008304 520 KLQEEIKVQ---------------LVELESFRNEYANVRLECNAADE 551 (570)
Q Consensus 520 rLq~Ei~aQ---------------l~~LEs~~~ErdaArle~~aA~E 551 (570)
+|-++|..+ +-.|+.|++...-+|.+...=-|
T Consensus 135 ~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rle 181 (660)
T KOG4302|consen 135 KLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLE 181 (660)
T ss_pred HHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 45677777666666655544333
No 300
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=47.35 E-value=70 Score=27.27 Aligned_cols=58 Identities=26% Similarity=0.409 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008304 469 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 537 (570)
Q Consensus 469 IeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ 537 (570)
+.|+..+=.+|.--|++++++++.|-+ +-+.. .+-..+|+.|+++|+.+...|..|+.
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i~~lpg----i~~s~-------eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAIRELPG----IDRSV-------EEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC----ccCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777888889999999988877 33333 33445555666666666666666654
No 301
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=47.25 E-value=64 Score=27.95 Aligned_cols=61 Identities=26% Similarity=0.315 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENS----SLTDSYNQQRSVVNQLKSEMEKLQEEI 525 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENs----ALTdryNqQ~~~v~qLk~dmErLq~Ei 525 (570)
+.++...|-+|-..||.-|+..+++-..|..--. .+...-.---..+.+|=.+|+.|+.||
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV 70 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEV 70 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHH
Confidence 4455566666666777777777777666643211 111111112224556666666666443
No 302
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=47.18 E-value=3.9e+02 Score=28.67 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 468 HIEDLTQEKFALQRSLEASRALSESL 493 (570)
Q Consensus 468 hIeDLT~EKfaLqRaLeks~~laEsL 493 (570)
-|++|-.-=.-|.+.-++=|=-.|+|
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSl 44 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESL 44 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444443333333333333333443
No 303
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=47.15 E-value=1.1e+02 Score=27.19 Aligned_cols=51 Identities=16% Similarity=0.361 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHhhh
Q 008304 496 ENSSLTDSYNQQRSVVNQLKSEMEKL--QEEIKVQLVELESFRNEYANVRLEC 546 (570)
Q Consensus 496 ENsALTdryNqQ~~~v~qLk~dmErL--q~Ei~aQl~~LEs~~~ErdaArle~ 546 (570)
+-++|.++.......+.+|..+|+.| ++++..-.+.+..++.|.++-....
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34445555556666666666666666 5555555555555555555444333
No 304
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=47.04 E-value=1.7e+02 Score=26.24 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 008304 516 SEMEKLQEEIKVQLVELESFRNEYANVRLECN 547 (570)
Q Consensus 516 ~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~ 547 (570)
..|.+|+.++....-+++.|+.++++++.|-.
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~ 80 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREEKQ 80 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888888888888888776654
No 305
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=46.86 E-value=69 Score=35.78 Aligned_cols=20 Identities=0% Similarity=0.106 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhhhHH
Q 008304 481 RSLEASRALSESLAAENSSL 500 (570)
Q Consensus 481 RaLeks~~laEsLA~ENsAL 500 (570)
.+|+.+++-+..|..+-++|
T Consensus 69 SALteqQ~kasELEKqLaaL 88 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333
No 306
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.54 E-value=1.5e+02 Score=30.76 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=27.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHH
Q 008304 506 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER 552 (570)
Q Consensus 506 qQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ER 552 (570)
.+...+..+++++.+|+.||+.....+.+++ +..++..++.|+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~----~~~~t~~~~ie~ 96 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR----RSVLTDDAALED 96 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHhHHHHHHH
Confidence 4555566666777777777776666666666 455556666666
No 307
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=46.49 E-value=1.7e+02 Score=24.40 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 008304 475 EKFALQRSLEASR 487 (570)
Q Consensus 475 EKfaLqRaLeks~ 487 (570)
-|-+++..|.+-+
T Consensus 12 akQ~~~eEL~kvk 24 (61)
T PF08826_consen 12 AKQAIQEELTKVK 24 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 308
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.44 E-value=1e+02 Score=32.84 Aligned_cols=57 Identities=28% Similarity=0.428 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLE-ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLe-ks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~ 526 (570)
++.|..+++.+..|..|=..+..-|. +++++.+.|+..-..| .+|.+.+++|+.||.
T Consensus 128 d~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~-----------~~~s~~~~k~esei~ 185 (300)
T KOG2629|consen 128 DDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTL-----------VQLSRNIEKLESEIN 185 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhhhHHHHHHHHH
Confidence 56788888888888777766654443 4456666665554443 377777777776654
No 309
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=46.10 E-value=4.5e+02 Score=29.79 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=13.4
Q ss_pred HHHHHHHhhhHHHHHHHHhHHHHHHH
Q 008304 489 LSESLAAENSSLTDSYNQQRSVVNQL 514 (570)
Q Consensus 489 laEsLA~ENsALTdryNqQ~~~v~qL 514 (570)
-.++|+.||.+|-.-.=........|
T Consensus 305 r~qqleeentelRs~~arlksl~dkl 330 (502)
T KOG0982|consen 305 RDQQLEEENTELRSLIARLKSLADKL 330 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677766654444443333333
No 310
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=45.99 E-value=3e+02 Score=26.97 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304 467 QHIEDLTQEKFALQRSLEASRALSESLAAENSS---LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (570)
Q Consensus 467 QhIeDLT~EKfaLqRaLeks~~laEsLA~ENsA---LTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr 543 (570)
+.+.|+..|-..|--.|+++++-++.|-.+-.- --...-.....+..++.++..|+-|-.+-...++.+..|||...
T Consensus 48 k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 48 KLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455544444444322111 11112223334444455555555555555555566666666666
Q ss_pred hhhhhHHHHHH-HHHHhhhhhhhhh
Q 008304 544 LECNAADERAK-ILASEVIGLEEKV 567 (570)
Q Consensus 544 le~~aA~ERak-~LAaEVV~LEEk~ 567 (570)
..++++..=.+ ...-.-+.||.|+
T Consensus 128 ~kf~~~i~evqQk~~~kn~lLEkKl 152 (201)
T PF13851_consen 128 RKFESAIQEVQQKTGLKNLLLEKKL 152 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665543332 2223334455544
No 311
>KOG3096 consensus Spliceosome-associated coiled-coil protein [Function unknown]
Probab=45.99 E-value=3.6e+02 Score=27.87 Aligned_cols=90 Identities=19% Similarity=0.185 Sum_probs=60.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008304 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLA--AENSSLTDSYNQ--QRSVVNQLKSEMEKLQEEIKVQLVEL 532 (570)
Q Consensus 457 ~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA--~ENsALTdryNq--Q~~~v~qLk~dmErLq~Ei~aQl~~L 532 (570)
++.-|.+|-++.|. .+++.-|... -||=.|+++|-. =..-...|.--++.+|.|++-+--..
T Consensus 89 gkr~d~~aW~e~l~--------------ns~aqlEhq~~r~~NLeLM~k~g~eaw~~~ne~le~~l~~aqkelq~~kk~i 154 (225)
T KOG3096|consen 89 GKRNDDAAWQESLL--------------NSMAQLEHQLVRNENLELMSKHGEEAWKQYNEVLEVMLTHAQKELQKTKKLI 154 (225)
T ss_pred CccchHHHHHHHHH--------------HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777776653 2333222222 345566666532 23444567778889999999999999
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 008304 533 ESFRNEYANVRLECNAADERAKILASEVIGL 563 (570)
Q Consensus 533 Es~~~ErdaArle~~aA~ERak~LAaEVV~L 563 (570)
..+..+|-.||+.+ -+|-+.|-.+.|.|
T Consensus 155 q~vn~~RK~~Q~~a---g~rL~~le~~wvqL 182 (225)
T KOG3096|consen 155 QDVNRQRKHAQLTA---GERLRELEQKWVQL 182 (225)
T ss_pred HHHhHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 99999999999864 56777777776655
No 312
>PRK14151 heat shock protein GrpE; Provisional
Probab=45.89 E-value=76 Score=30.77 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=9.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH
Q 008304 537 NEYANVRLECNAADERAKILAS 558 (570)
Q Consensus 537 ~ErdaArle~~aA~ERak~LAa 558 (570)
+|.+|+|-+...-.|.++..|.
T Consensus 48 Ae~eN~rkR~~kE~e~~~~~a~ 69 (176)
T PRK14151 48 ADLQNVRRRAEQDVEKAHKFAL 69 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333
No 313
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=45.85 E-value=3.2e+02 Score=28.90 Aligned_cols=94 Identities=21% Similarity=0.263 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHH---------HHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKF-----ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS---------EMEKLQEE 524 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKf-----aLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~---------dmErLq~E 524 (570)
...+.+|++.+..+...-- .+.+.....++...+|..+...+..+..+....+.+|.. |.|.|- -
T Consensus 59 ~~~~~~L~~ql~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~dW~LaEaeyLl-r 137 (372)
T PF04375_consen 59 QQQLQALQQQLQQLQQQLEAQQAQQLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQLAALSQRSRDDWLLAEAEYLL-R 137 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHH-H
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304 525 IKVQLVELESFRNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 525 i~aQl~~LEs~~~ErdaArle~~aA~ERak~L 556 (570)
++.|.+-|+ ..++.|..-...||+|=+.+
T Consensus 138 lA~qrL~l~---~Dv~~Al~lL~~AD~rLa~~ 166 (372)
T PF04375_consen 138 LANQRLQLE---GDVQTALALLQSADQRLAEL 166 (372)
T ss_pred HHHHHHHHc---CCHHHHHHHHHHHHHHHHhc
No 314
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=45.63 E-value=3.5e+02 Score=33.85 Aligned_cols=68 Identities=24% Similarity=0.348 Sum_probs=45.4
Q ss_pred HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHH
Q 008304 488 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555 (570)
Q Consensus 488 ~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~ 555 (570)
.-+++|-.--.++...+=+-...+..|+.++..+.+|++.-.-+|+.++.|-.+-+..|++.+.|+-.
T Consensus 521 ~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE 588 (1293)
T KOG0996|consen 521 KKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEE 588 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555556666677777777777777787777777888887777666666666665543
No 315
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=45.55 E-value=2.3e+02 Score=34.36 Aligned_cols=73 Identities=30% Similarity=0.360 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 466 EQHIEDLTQEKFALQRSLEASRALSESLAAENS-----SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 466 qQhIeDLT~EKfaLqRaLeks~~laEsLA~ENs-----ALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
|.-|.||-.||++|+-.|---+-+.++.-.|-+ .+|++| +-.+..|.+++..++.+|..-...+-.+..|..
T Consensus 47 eniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriy---Rrdv~llEddlk~~~sQiriLQn~c~~lE~ekq 123 (1265)
T KOG0976|consen 47 ENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIY---RRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQ 123 (1265)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999776555555666555443 234444 334555555555555555544444444444433
Q ss_pred H
Q 008304 541 N 541 (570)
Q Consensus 541 a 541 (570)
+
T Consensus 124 ~ 124 (1265)
T KOG0976|consen 124 K 124 (1265)
T ss_pred H
Confidence 3
No 316
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.52 E-value=1.3e+02 Score=31.32 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304 469 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (570)
Q Consensus 469 IeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~a 527 (570)
|..-..+=-.++-.+...+.=.+.|-..-+.+...-+.....+.+++.+|++|+.+|+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~ 91 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAE 91 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444566677777777777777777777777777777777777788777777654
No 317
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=45.43 E-value=2.9e+02 Score=29.63 Aligned_cols=40 Identities=28% Similarity=0.449 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhHHHHHH
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRAL--------SESLAAENSSLTDSY 504 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~l--------aEsLA~ENsALTdry 504 (570)
++..++-|-.||..|..+|++-++. ++.|+.|+-.|-.+.
T Consensus 154 ~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l 201 (310)
T PF09755_consen 154 KQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKL 201 (310)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544432 344445544444443
No 318
>PRK12718 flgL flagellar hook-associated protein FlgL; Provisional
Probab=45.31 E-value=2.6e+02 Score=31.32 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=48.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhH------HHHHHHHHHhhhhhhhhhhcC
Q 008304 502 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA------DERAKILASEVIGLEEKVRSL 570 (570)
Q Consensus 502 dryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA------~ERak~LAaEVV~LEEk~lqL 570 (570)
-+++++-..+++.++-+...+..+..+...|.++..-..++|..+..| .+==+.+|.|+-+|.+.++.|
T Consensus 50 l~l~q~~~~~eQY~~Ni~~A~~~L~~~EstL~sv~~~L~rirel~VqA~Ngt~s~~dR~aia~El~~l~~qL~~l 124 (510)
T PRK12718 50 VNVSQTSSMNSNYDANRKQAEQALGAQTNTLQSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGL 124 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777777777777777776666666444333 333358899999999988754
No 319
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=45.31 E-value=1.1e+02 Score=30.16 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=8.9
Q ss_pred hhhhHHHHHHHHhhhhhHHH
Q 008304 532 LESFRNEYANVRLECNAADE 551 (570)
Q Consensus 532 LEs~~~ErdaArle~~aA~E 551 (570)
++..+.++..|+.+...+..
T Consensus 148 ~~~a~~~~~~a~~~l~~~~~ 167 (334)
T TIGR00998 148 LDHARKALLSAKAALNAAIQ 167 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 320
>PLN02678 seryl-tRNA synthetase
Probab=45.26 E-value=1.1e+02 Score=33.61 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008304 512 NQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (570)
Q Consensus 512 ~qLk~dmErLq~Ei~aQl~~LEs~~~Erda 541 (570)
.+|..++.+|.+||+.....+..+..|+..
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 321
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=45.23 E-value=3.4e+02 Score=30.09 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=14.2
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (570)
Q Consensus 491 EsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~a 527 (570)
..|.++...|...+.+....-.++...+++|+++|..
T Consensus 106 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~ 142 (779)
T PRK11091 106 VQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKE 142 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444433333333333333333444444333
No 322
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=44.88 E-value=2.2e+02 Score=29.87 Aligned_cols=76 Identities=25% Similarity=0.253 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHhhhhhHHHHHHHHH
Q 008304 481 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE--YANVRLECNAADERAKILA 557 (570)
Q Consensus 481 RaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~E--rdaArle~~aA~ERak~LA 557 (570)
..|+..|+-=+.|.++-..|..+ .-+...+..|+.+|-+++.|..+-.+.|..++-+ +.+..+.+.+-.|||.-++
T Consensus 138 ~sl~p~R~~r~~l~d~I~kLk~k-~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~ 215 (271)
T PF13805_consen 138 ESLQPSRDRRRKLQDEIAKLKYK-DPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEKQA 215 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHhHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666777777777654 5567789999999999999999999999999855 5677888899999987665
No 323
>PRK00295 hypothetical protein; Provisional
Probab=44.69 E-value=1.5e+02 Score=24.72 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~a 527 (570)
|++.|+|| ++|+++|-.+ .+.|-+-.=+|..++..|++.+..|.+.++.
T Consensus 3 ~e~Ri~~L-E~kla~qE~t-------------ie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 3 LEERVTEL-ESRQAFQDDT-------------IQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHH-HHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 324
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=44.64 E-value=72 Score=32.13 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=29.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008304 455 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (570)
Q Consensus 455 s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LE 533 (570)
+....+..+.||+-++--++-=+.||+-|+ .|.+...+.++.|+++.-+|+++++.-+..-.+|+
T Consensus 35 ~~~~~~r~~~le~~~~~~~~~~~~l~~ql~--------------~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 35 SGSVEDRVTQLERISNAHSQLLTQLQQQLS--------------DNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred CCchHHHHHHHHHHHHhhhHHHHHHHHHHH--------------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444433334444433 34444444455555555555554443333333333
No 325
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.58 E-value=5.4e+02 Score=30.26 Aligned_cols=73 Identities=29% Similarity=0.337 Sum_probs=48.8
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------HHHHHHHHhhhhhHHHHHHHH
Q 008304 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF--------------RNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 491 EsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~--------------~~ErdaArle~~aA~ERak~L 556 (570)
|+|-.|-.+=-.-||++ |-+|+-++.++++++.--..++|.+ ..+|-+.|-+.-+--+|-.+|
T Consensus 92 esLLqESaakE~~yl~k---I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rl 168 (772)
T KOG0999|consen 92 ESLLQESAAKEEYYLQK---ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARL 168 (772)
T ss_pred HHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555667765 3445555555555555444444433 366777788888889999999
Q ss_pred HHhhhhhhhh
Q 008304 557 ASEVIGLEEK 566 (570)
Q Consensus 557 AaEVV~LEEk 566 (570)
-+|.-.|||.
T Consensus 169 lseYSELEEE 178 (772)
T KOG0999|consen 169 LSEYSELEEE 178 (772)
T ss_pred HHHHHHHHHh
Confidence 9999999985
No 326
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=44.34 E-value=2.9e+02 Score=29.14 Aligned_cols=68 Identities=21% Similarity=0.280 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHH
Q 008304 484 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 551 (570)
Q Consensus 484 eks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~E 551 (570)
.+++=..-+|=-|-.+|+=..-=....+.+|++.+.++++|++-..-+++..+...|..+.++....+
T Consensus 94 rkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 94 RKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666676677777666666677777777777777777777667777777766666666655444
No 327
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=44.29 E-value=3.4e+02 Score=27.13 Aligned_cols=76 Identities=14% Similarity=0.146 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHH--------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008304 478 ALQRSLEASRALSESLAAENSSLTDSYNQQRS--------------------VVNQLKSEMEKLQEEIKVQLVELESFRN 537 (570)
Q Consensus 478 aLqRaLeks~~laEsLA~ENsALTdryNqQ~~--------------------~v~qLk~dmErLq~Ei~aQl~~LEs~~~ 537 (570)
.|..++..-..-++.+|..+..|.++...+-. ....+...|+.+|+.+..+...|+..+.
T Consensus 61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk 140 (258)
T cd07655 61 TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKK 140 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45555555555566666666666665554422 2344555666667777777788888888
Q ss_pred HHHHHHhhhhhHHHHH
Q 008304 538 EYANVRLECNAADERA 553 (570)
Q Consensus 538 ErdaArle~~aA~ERa 553 (570)
.|..+=.+...|....
T Consensus 141 ~Y~~~cke~e~a~~~~ 156 (258)
T cd07655 141 AYHAACKAEKSAQKQE 156 (258)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887766665555443
No 328
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=44.29 E-value=2.2e+02 Score=25.00 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 462 FAALEQHIEDLTQEKFALQRSLEASRA 488 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaLqRaLeks~~ 488 (570)
|..| +|+++|-+||..|+.||++-.+
T Consensus 3 ~~~l-k~mkeLEqEkd~LLqgLe~~Er 28 (84)
T PF11414_consen 3 YNML-KRMKELEQEKDVLLQGLEMEER 28 (84)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHH-HHHHHHHHHHHHHHhHHHHHHH
Confidence 4444 6899999999999999987544
No 329
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=44.19 E-value=3.2e+02 Score=30.03 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHH-HHHHH-HHHHHH-----
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSL---EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM-EKLQE-EIKVQL----- 529 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaL---eks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dm-ErLq~-Ei~aQl----- 529 (570)
-.|.-|++...-+ .....+++.. +..-+++..+...+.+-...|.+.+..+-+.|+++ +.|+. -+...+
T Consensus 194 ~~~~~L~~~~~A~-~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~ 272 (511)
T PF09787_consen 194 IERQELEERPKAL-RHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTN 272 (511)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccc
Confidence 3444444444422 2333444433 33444445555556666777776555555544433 22443 111111
Q ss_pred -HHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhh
Q 008304 530 -VELESFRNEYANVRLECNAADERAKILASEVIGLEEK 566 (570)
Q Consensus 530 -~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk 566 (570)
++|+.++.|++.++.+++.....-..|-+|.-.+|.+
T Consensus 273 ~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~ 310 (511)
T PF09787_consen 273 SIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQ 310 (511)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2377777788887777777777766666666555544
No 330
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=44.14 E-value=2e+02 Score=24.32 Aligned_cols=67 Identities=22% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008304 469 IEDLTQEKFALQRSLEASRALSESLAA----------------ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 532 (570)
Q Consensus 469 IeDLT~EKfaLqRaLeks~~laEsLA~----------------ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~L 532 (570)
+++++.+|-.|.+.+......-+.+.. +...|...+.+-...+.+++...+.-+.-|...+..+
T Consensus 39 l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~~~~~~ 118 (143)
T PF05130_consen 39 LEELVEEKQELLEELRELEKQRQQLLAKLGAEPEEATLSELIEEREELQALWRELRELLEELQELNERNQQLLEQALEFV 118 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhh
Q 008304 533 ESF 535 (570)
Q Consensus 533 Es~ 535 (570)
..+
T Consensus 119 ~~~ 121 (143)
T PF05130_consen 119 QQL 121 (143)
T ss_dssp HHH
T ss_pred HHH
No 331
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=44.08 E-value=3.1e+02 Score=26.54 Aligned_cols=94 Identities=21% Similarity=0.202 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ---------QRSVVNQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNq---------Q~~~v~qLk~dmErLq~Ei~aQl 529 (570)
+.+++.|++-|--.-.-=-.---+|+++.+.+-. +|+--+...-|. | ..|..++++|++-+.++.+-.
T Consensus 21 ~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e--ae~k~~~~~a~~P~~~~~~~wq-lkvr~a~~dv~nkq~~l~AA~ 97 (136)
T PF11570_consen 21 DEDIATLQERQASAEQALNGRRSELDQANKKVKE--AEIKQDEFFANNPPHEYGRGWQ-LKVRRAQKDVQNKQNKLKAAQ 97 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCTT-TTSSCHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHhcccccccCCCccccccHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhHHHHHHHHhhhhhHHHHHHH
Q 008304 530 VELESFRNEYANVRLECNAADERAKI 555 (570)
Q Consensus 530 ~~LEs~~~ErdaArle~~aA~ERak~ 555 (570)
-.|..+.+|..++|-....|+||=+.
T Consensus 98 ~~l~~~~~el~~~~~al~~A~e~Rkq 123 (136)
T PF11570_consen 98 KELNAADEELNRIQAALSQAMERRKQ 123 (136)
T ss_dssp HHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHH
No 332
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=43.98 E-value=4.2e+02 Score=28.11 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLE 484 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLe 484 (570)
...+++..|+||-.+--.|++.++
T Consensus 82 si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 82 SIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555444554443
No 333
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=43.70 E-value=19 Score=31.18 Aligned_cols=61 Identities=23% Similarity=0.385 Sum_probs=21.3
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008304 451 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 525 (570)
Q Consensus 451 ~~F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei 525 (570)
+.|.....+=|-.-.-.+|+.|..+--.|+ .||..|..+-++....+.+++...+.|++.+
T Consensus 9 ~~F~~~~rGYd~~eVD~fl~~l~~~~~~l~--------------~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 9 KEFKKSMRGYDPDEVDDFLDELAEELERLQ--------------RENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp ----EEEEEEEHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHCCCCT---------------
T ss_pred CccCCCCCCcCHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 344444444444445555666655543333 4555555555555555566665555555543
No 334
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=43.63 E-value=4.5e+02 Score=31.04 Aligned_cols=99 Identities=14% Similarity=0.189 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008304 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erda 541 (570)
+.-|+......-.|...|...|..-+.-...+.. ...+...+-.+.+..|++++..+++..+-....+..+..|..+
T Consensus 354 ~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~---~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~ 430 (717)
T PF09730_consen 354 LEILECKYKVAVSEVIQLKAELKALKSKYNELEE---RYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRA 430 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4457788888888888887777766555544444 2233333445667777777777777655555566666677776
Q ss_pred HHhhhhhHHHHHHHHHHhhhhh
Q 008304 542 VRLECNAADERAKILASEVIGL 563 (570)
Q Consensus 542 Arle~~aA~ERak~LAaEVV~L 563 (570)
++..+.++...-....-|.|.+
T Consensus 431 l~~~A~E~q~~LnsAQDELvtf 452 (717)
T PF09730_consen 431 LSKLAGESQGSLNSAQDELVTF 452 (717)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 6666665555554444454443
No 335
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=43.44 E-value=1.2e+02 Score=32.60 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=13.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (570)
Q Consensus 500 LTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~ 531 (570)
|..+-.+-...+.+|+.+++.+++++...++.
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333444444444444444444444433
No 336
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=43.33 E-value=3.6e+02 Score=27.11 Aligned_cols=113 Identities=18% Similarity=0.154 Sum_probs=68.7
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHH------------HHHH
Q 008304 450 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQ------------LKSE 517 (570)
Q Consensus 450 ~~~F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~q------------Lk~d 517 (570)
.|.+....-..+..-|++-++++.+++-.++-++++.+..-.++-..-+.-.++|.+.-..+.. =..+
T Consensus 75 ~H~~ia~~L~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~ke 154 (242)
T cd07671 75 SHIQLAGMLREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQ 154 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 4444444344455557777777777777777787777777777777777777777655433322 1245
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHH---HHHHHHhhhh
Q 008304 518 MEKLQEEIKVQLVELESFRNEYANVRLECNAADER---AKILASEVIG 562 (570)
Q Consensus 518 mErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ER---ak~LAaEVV~ 562 (570)
+|.+++-++.-...++.-+.+|..+.-..+....+ .=..+-+++.
T Consensus 155 leK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q 202 (242)
T cd07671 155 SEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWETEHILTCEVFQ 202 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655556666677887777655444433 3334555443
No 337
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=43.29 E-value=2e+02 Score=24.11 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHH
Q 008304 480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEK 520 (570)
Q Consensus 480 qRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmEr 520 (570)
.+.|.+.++.++.|-.+-..++..-++--..++++.+|+..
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~ 65 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNE 65 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555554444444444444444433
No 338
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=43.23 E-value=5.1e+02 Score=30.31 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=10.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhh
Q 008304 544 LECNAADERAKILASEVIGLEEK 566 (570)
Q Consensus 544 le~~aA~ERak~LAaEVV~LEEk 566 (570)
.....+.+|.+.+...+-.|+++
T Consensus 586 ~~l~~~r~~~~~~~~~~~~l~~~ 608 (908)
T COG0419 586 EELEELRERLKELKKKLKELEER 608 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555554444344433
No 339
>PRK14157 heat shock protein GrpE; Provisional
Probab=43.15 E-value=82 Score=32.08 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 008304 514 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVI 561 (570)
Q Consensus 514 Lk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV 561 (570)
|..+++.|+.|++.+.-.+--+.+|++|+|-+...-.|+++..|.+-|
T Consensus 82 ~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~ 129 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDV 129 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544444555556666666666666666666555543
No 340
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=43.02 E-value=2.5e+02 Score=30.81 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=21.7
Q ss_pred HHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhh
Q 008304 526 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 565 (570)
Q Consensus 526 ~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEE 565 (570)
+.++..+++=+.++-+++.+..--+|=.+.+-.|. .|||
T Consensus 482 ~~~~~~l~~er~~l~~~~~~~~i~~~~~~~~~~~l-d~~e 520 (525)
T TIGR00831 482 RARLYVLDAKRSAVVDLRAGGLISQEVLLELMREL-DLKE 520 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-hHHH
Confidence 33444444444445556666666666666666665 4544
No 341
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=42.95 E-value=1.6e+02 Score=31.40 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA 495 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ 495 (570)
.-+...|.+.+++|.++.-.++..|++-++....|-.
T Consensus 326 g~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 326 GVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445667777788888888888888777777666654
No 342
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=42.90 E-value=1.3e+02 Score=33.68 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=11.1
Q ss_pred hHHHHHHHHhhhhhHHHHHHH
Q 008304 535 FRNEYANVRLECNAADERAKI 555 (570)
Q Consensus 535 ~~~ErdaArle~~aA~ERak~ 555 (570)
.+.|...|+.+...+.|.++.
T Consensus 279 ~kkE~EKaq~E~~k~~Eea~k 299 (489)
T PF05262_consen 279 EKKEAEKAQEEAKKKQEEAKK 299 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555544
No 343
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=42.73 E-value=2e+02 Score=24.48 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=19.6
Q ss_pred HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 489 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (570)
Q Consensus 489 laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~ 531 (570)
+.+.|-+||-.|-.+--+-.+.=.+|.++++.-+.-|.+-+.-
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~R 57 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITR 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555554444444444444444444444444443333
No 344
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=42.68 E-value=1.7e+02 Score=23.24 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 008304 511 VNQLKSEMEKLQ 522 (570)
Q Consensus 511 v~qLk~dmErLq 522 (570)
+.+|+..++.|+
T Consensus 28 ~~~Le~~~~~L~ 39 (64)
T PF00170_consen 28 IEELEEKVEELE 39 (64)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=42.61 E-value=77 Score=35.29 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSL 483 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaL 483 (570)
+.+.||+.|+.|.+++-+|...|
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l 586 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKL 586 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666665555544
No 346
>PRK14163 heat shock protein GrpE; Provisional
Probab=42.47 E-value=99 Score=31.21 Aligned_cols=25 Identities=4% Similarity=0.061 Sum_probs=10.6
Q ss_pred HHHhhhHHHHHHHHhHHHHHHHHHH
Q 008304 493 LAAENSSLTDSYNQQRSVVNQLKSE 517 (570)
Q Consensus 493 LA~ENsALTdryNqQ~~~v~qLk~d 517 (570)
|..+...|.++|=+....+..+++.
T Consensus 52 l~~e~~el~d~~lR~~AEfeN~rkR 76 (214)
T PRK14163 52 VRTALGERTADLQRLQAEYQNYRRR 76 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455443333333333333
No 347
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=42.37 E-value=3.7e+02 Score=30.70 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHh
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI-------KVQLVEL 532 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei-------~aQl~~L 532 (570)
.+.++++|-.+.++.|--.+.| ++++...++.+.-..|-.+.++......+|+..+..|.+.. ..+++.+
T Consensus 353 ~~l~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~laEae~Ll~l 429 (656)
T PRK06975 353 QELVQRQQANDAQTAELRVKTE---QAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMIAEVEQMLSS 429 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHH
Confidence 3444444444444444322222 23344444444444444444444454444544444332211 1123333
Q ss_pred hhhH----HHHHHHHhhhhhHHHHHH
Q 008304 533 ESFR----NEYANVRLECNAADERAK 554 (570)
Q Consensus 533 Es~~----~ErdaArle~~aA~ERak 554 (570)
.+-+ ...+.|..-...||+|-.
T Consensus 430 A~q~L~l~~dv~~A~~~L~~AD~~La 455 (656)
T PRK06975 430 ASQQLQLTGNVQLALIALQNADARLA 455 (656)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3222 455666666777777753
No 348
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=42.22 E-value=1.1e+02 Score=31.85 Aligned_cols=77 Identities=23% Similarity=0.315 Sum_probs=50.4
Q ss_pred ccccccc--cccchhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHH
Q 008304 448 ENQHGFY--STKHNEDFAALEQHIED-------LTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518 (570)
Q Consensus 448 ~~~~~F~--s~~~~ddFAaLqQhIeD-------LT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dm 518 (570)
+.|.+|- -.+.++=|....+-||. |-.|...+.+-.+++....-.++.|+..+...+-.....+..|....
T Consensus 223 ~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~Lc 302 (309)
T PF09728_consen 223 EKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLC 302 (309)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455552 24556666666655555 45677788888888888888888888777776666666666666666
Q ss_pred HHHHHH
Q 008304 519 EKLQEE 524 (570)
Q Consensus 519 ErLq~E 524 (570)
..||.|
T Consensus 303 RaLQ~e 308 (309)
T PF09728_consen 303 RALQAE 308 (309)
T ss_pred HHHhhC
Confidence 655543
No 349
>PRK13874 conjugal transfer protein TrbJ; Provisional
Probab=42.12 E-value=3.8e+02 Score=27.11 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=42.7
Q ss_pred ccccccccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHH
Q 008304 448 ENQHGFYSTKHNED-FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 515 (570)
Q Consensus 448 ~~~~~F~s~~~~dd-FAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk 515 (570)
..|.+|.+...+++ |+.-++--.+ | .-.++-+|.-+-.+++.+.++..+|.+-..+-.+..++|+
T Consensus 111 ~~yp~~~~~~s~~~~~a~a~~~w~~-s--~~~~~daL~~~~~~~~n~~~d~~~L~~L~~~SqsA~G~lq 176 (230)
T PRK13874 111 RLYPEASATVSDAQLVADARERWQN-T--VGGLQDALRVQAGVVGNLDTDRSQLSALVGQSQSATGALQ 176 (230)
T ss_pred HHCcccccCCCHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhCCChHHHHH
Confidence 34555544444444 4444444432 2 3389999988888899999999999988877666544443
No 350
>PRK11519 tyrosine kinase; Provisional
Probab=42.02 E-value=3.6e+02 Score=30.79 Aligned_cols=30 Identities=7% Similarity=-0.017 Sum_probs=18.8
Q ss_pred HHHHhhhhHHHHHHHHhhhhhHHHHHHHHH
Q 008304 528 QLVELESFRNEYANVRLECNAADERAKILA 557 (570)
Q Consensus 528 Ql~~LEs~~~ErdaArle~~aA~ERak~LA 557 (570)
+..++..+..|++.++.-+...-+|.+.+.
T Consensus 368 ~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 368 TQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666677777777766666666544
No 351
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=41.80 E-value=2.8e+02 Score=26.27 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA 495 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ 495 (570)
.+|-+...-.+.+.+|+-.|.-.|..+.+-.+.|-.
T Consensus 13 k~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 13 KDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445455555566666666666666666666666655
No 352
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=41.75 E-value=3.8e+02 Score=26.90 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHH
Q 008304 473 TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 551 (570)
Q Consensus 473 T~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~E 551 (570)
++|.......|+++..-=+.+..|-+....+|=.--...+-=+.++|+.++-......++...+.||..+...+|...+
T Consensus 118 ~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~ 196 (237)
T cd07657 118 DEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVVKGGRGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEE 196 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444311111111112345556666666666677777777777777766543
No 353
>PRK14155 heat shock protein GrpE; Provisional
Probab=41.28 E-value=89 Score=31.19 Aligned_cols=6 Identities=33% Similarity=0.440 Sum_probs=2.2
Q ss_pred HHHHHH
Q 008304 499 SLTDSY 504 (570)
Q Consensus 499 ALTdry 504 (570)
.+.++|
T Consensus 31 elkd~~ 36 (208)
T PRK14155 31 ALKDQA 36 (208)
T ss_pred HHHHHH
Confidence 333333
No 354
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.25 E-value=3.5e+02 Score=33.47 Aligned_cols=55 Identities=11% Similarity=0.142 Sum_probs=37.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHh
Q 008304 505 NQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 559 (570)
Q Consensus 505 NqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaE 559 (570)
+.-.....+|.+....|=+|=++-...+++++.+.-+++....+++-|+-.--..
T Consensus 456 ~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~ 510 (1200)
T KOG0964|consen 456 TELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGID 510 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhH
Confidence 3333344455555555556666777888899999999998888888876544333
No 355
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.20 E-value=4.4e+02 Score=27.57 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=21.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhhhHH---HHHHHHHHhh
Q 008304 524 EIKVQLVELESFRNEYANVRLECNAAD---ERAKILASEV 560 (570)
Q Consensus 524 Ei~aQl~~LEs~~~ErdaArle~~aA~---ERak~LAaEV 560 (570)
|+.+.+.-+--++.|+|..+-=.-.+. -+|+.++.++
T Consensus 101 elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kR 140 (246)
T KOG4657|consen 101 ELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKR 140 (246)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444578886654444444 4888888877
No 356
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=40.98 E-value=91 Score=29.38 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLT-QEKFALQRSLEASRALSESLAA--ENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 525 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT-~EKfaLqRaLeks~~laEsLA~--ENsALTdryNqQ~~~v~qLk~dmErLq~Ei 525 (570)
.+.|..|++.++.|- .|+-.+.+.++.+++. .+ ||... =+-......|...+..|++.+
T Consensus 7 ~~G~~~L~~El~~L~~~~r~~~~~~i~~Ar~~----GDlsENaeY----~aak~~~~~le~rI~~L~~~L 68 (156)
T TIGR01461 7 PEGYEKLKQELNYLWREERPEVTQKVTWAASL----GDRSENADY----QYGKKRLREIDRRVRFLTKRL 68 (156)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHc----CCcchhhhh----HHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999995 6888888888777754 34 66543 333444445666666666443
No 357
>PRK14141 heat shock protein GrpE; Provisional
Probab=40.64 E-value=95 Score=31.10 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=13.7
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q 008304 492 SLAAENSSLTDSYNQQRSVVNQLKSEME 519 (570)
Q Consensus 492 sLA~ENsALTdryNqQ~~~v~qLk~dmE 519 (570)
.|..|...|.++|=+.......+++.++
T Consensus 42 ~le~e~~elkd~~lR~~Ae~eN~RKR~~ 69 (209)
T PRK14141 42 ALKAENAELKDRMLRLAAEMENLRKRTQ 69 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556665444444444443333
No 358
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=40.43 E-value=1.8e+02 Score=25.89 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=6.9
Q ss_pred hhhHHHHHHHHHH
Q 008304 459 NEDFAALEQHIED 471 (570)
Q Consensus 459 ~ddFAaLqQhIeD 471 (570)
.++++.|++.+++
T Consensus 34 ~~~~~~l~~~~~~ 46 (106)
T PF10805_consen 34 REDIEKLEERLDE 46 (106)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555543
No 359
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=40.24 E-value=2.2e+02 Score=32.76 Aligned_cols=112 Identities=19% Similarity=0.137 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSL-------EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaL-------eks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~ 531 (570)
++..+.++..|+-+|.|--.+|-.+ .-.++=.--++-|++.+-.---+-.+.-.+|+.+++.||..-+.-+..
T Consensus 211 N~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~ 290 (596)
T KOG4360|consen 211 NTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQM 290 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666665543333322 222222233344444444333333333344444444444444444444
Q ss_pred hhhhHHHHHHHHh------hhhhHHHH-----HHHHHHh-hhhhhhhhhcC
Q 008304 532 LESFRNEYANVRL------ECNAADER-----AKILASE-VIGLEEKVRSL 570 (570)
Q Consensus 532 LEs~~~ErdaArl------e~~aA~ER-----ak~LAaE-VV~LEEk~lqL 570 (570)
++...+|...+|- -...+--- --.+|+| +++++++-++|
T Consensus 291 ~~EaeeELk~lrs~~~p~~~s~~~~~~~~~fp~~~~aae~i~lt~r~~~ql 341 (596)
T KOG4360|consen 291 LHEAEEELKCLRSCDAPKLISQEALSHGHHFPQLSLAAEKIELTMRKNLQL 341 (596)
T ss_pred HHHHHHHHHhhccCCCcchhHHHHHHhhhhCChhhHHHHHHHHhhhhhhcc
Confidence 4444444444432 11111111 1356778 77777776654
No 360
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=40.16 E-value=2.1e+02 Score=29.38 Aligned_cols=85 Identities=12% Similarity=0.159 Sum_probs=40.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008304 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 537 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ 537 (570)
..++|..+|++..-+.. .|+++++-=++-..|=...+.+|+.-.....-=..+++.+++.++.-..+++.-+.
T Consensus 117 ~e~~~~KaQK~~~k~~k-------~v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~k~~~~~~~sk~ 189 (258)
T cd07680 117 AEDGFRKAQKPWAKKMK-------ELEAAKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVDKCKQDVQKTQE 189 (258)
T ss_pred HHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666655444333 25555555555544444334333321111111134555555555555555666666
Q ss_pred HHHHHHhhhhhH
Q 008304 538 EYANVRLECNAA 549 (570)
Q Consensus 538 ErdaArle~~aA 549 (570)
+|.++....+.-
T Consensus 190 ~Y~~~l~~ln~~ 201 (258)
T cd07680 190 KYEKVLDDVGKT 201 (258)
T ss_pred HHHHHHHHHHHh
Confidence 666666555443
No 361
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=40.14 E-value=1.3e+02 Score=29.62 Aligned_cols=68 Identities=24% Similarity=0.395 Sum_probs=45.6
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008304 451 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 523 (570)
Q Consensus 451 ~~F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~ 523 (570)
++..+...-++|.-++-+|+-|..++-.|+.-|+++..+-+-|+-|+ +-++...++++++.++..|.+
T Consensus 123 ~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~-----~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 123 RNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIER-----ELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred eeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 34455666788888999999999999999999988886666665543 223444444444444444443
No 362
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=40.09 E-value=6.7e+02 Score=29.32 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=38.9
Q ss_pred ccchhhHHHHHHHHHHHHHHH---HHHHHHHHHH-----------HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 008304 456 TKHNEDFAALEQHIEDLTQEK---FALQRSLEAS-----------RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 521 (570)
Q Consensus 456 ~~~~ddFAaLqQhIeDLT~EK---faLqRaLeks-----------~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErL 521 (570)
....+....||+-|+.|-.|- ..+...|..+ +--.++|-.||+.|-.+++.....-.+-|.-|..|
T Consensus 414 ~~~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L 493 (697)
T PF09726_consen 414 NSEPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL 493 (697)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444677788888887765541 1112222222 22245577888888888887665555555444444
Q ss_pred HH
Q 008304 522 QE 523 (570)
Q Consensus 522 q~ 523 (570)
++
T Consensus 494 Ek 495 (697)
T PF09726_consen 494 EK 495 (697)
T ss_pred HH
Confidence 43
No 363
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=40.08 E-value=3.2e+02 Score=27.56 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHH
Q 008304 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA 557 (570)
Q Consensus 483 Leks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LA 557 (570)
|+.+.+..|.+..+.++=..+-++.-.+.-+-+..+...|++.+ .+..+|.+|+.+||....+...+.+.|=
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r---~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQAR---QEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333333333333333333333333322 3345556777777777776666665553
No 364
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=40.04 E-value=4.2e+02 Score=26.91 Aligned_cols=7 Identities=29% Similarity=0.368 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 008304 463 AALEQHI 469 (570)
Q Consensus 463 AaLqQhI 469 (570)
+++++.|
T Consensus 96 ~~a~a~l 102 (346)
T PRK10476 96 ALADAQI 102 (346)
T ss_pred HHHHHHH
Confidence 3333333
No 365
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=40.04 E-value=2.8e+02 Score=30.46 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=51.6
Q ss_pred HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------HHHH-HhhhhHHHHHHHHhhhhhHHHHHHHHHHh
Q 008304 489 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK--------VQLV-ELESFRNEYANVRLECNAADERAKILASE 559 (570)
Q Consensus 489 laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~--------aQl~-~LEs~~~ErdaArle~~aA~ERak~LAaE 559 (570)
..-++-.|-...+.+|-+++.++..-|+.+--+++-+- .+-+ .|+....-.--|.++|+.|.-=-...|+.
T Consensus 77 ~er~~r~e~QkAa~~FeRat~vl~~AkeqVsl~~~sL~~~~~~~~~~~~~evlnh~~qrV~EaE~e~t~aE~~Has~a~~ 156 (426)
T KOG2008|consen 77 VERQARLEAQKAAQDFERATEVLRAAKEQVSLAEQSLLEDDKRQFDSAWQEVLNHATQRVMEAEQEKTRAELVHASTAAR 156 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777888999999999988887765554332 2222 22222223345667777776666666777
Q ss_pred hhhhhhhhhcC
Q 008304 560 VIGLEEKVRSL 570 (570)
Q Consensus 560 VV~LEEk~lqL 570 (570)
...|+.|+++|
T Consensus 157 ~l~l~~~~R~~ 167 (426)
T KOG2008|consen 157 YLALMGRMRQL 167 (426)
T ss_pred HHHHHHHHHHH
Confidence 77788777764
No 366
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=39.99 E-value=3.2e+02 Score=27.42 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=8.0
Q ss_pred hhhhHHHHHHHHhhhhhHH
Q 008304 532 LESFRNEYANVRLECNAAD 550 (570)
Q Consensus 532 LEs~~~ErdaArle~~aA~ 550 (570)
++..+.+|.+|+.++..|.
T Consensus 147 ~~~~~~~~~~a~~~~~~a~ 165 (331)
T PRK03598 147 LENARSSRDQAQATLKSAQ 165 (331)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 367
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=39.77 E-value=3.4e+02 Score=29.90 Aligned_cols=6 Identities=33% Similarity=0.800 Sum_probs=2.6
Q ss_pred cccccc
Q 008304 353 SFLDSL 358 (570)
Q Consensus 353 SFLDSi 358 (570)
.|||.+
T Consensus 148 ~lLD~~ 153 (563)
T TIGR00634 148 QLLDTF 153 (563)
T ss_pred HHHHHh
Confidence 344443
No 368
>PRK14144 heat shock protein GrpE; Provisional
Probab=39.57 E-value=1.3e+02 Score=30.17 Aligned_cols=27 Identities=22% Similarity=0.098 Sum_probs=13.6
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhh
Q 008304 534 SFRNEYANVRLECNAADERAKILASEV 560 (570)
Q Consensus 534 s~~~ErdaArle~~aA~ERak~LAaEV 560 (570)
-+.+|.+|+|-+...-.++++..|.+-
T Consensus 70 R~~AefeN~RKR~~kE~e~~~~~a~~~ 96 (199)
T PRK14144 70 RALAELENVRRRMEREVANAHKYGVEK 96 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555554443
No 369
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=39.51 E-value=2e+02 Score=23.36 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=21.6
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304 497 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (570)
Q Consensus 497 NsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~ 535 (570)
|+....+ +=..+|.+-+..++.++.++..-...|+.+
T Consensus 29 n~~F~~k--AP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 29 NENFVEK--APEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp STTHHHH--S-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred Ccccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444443 445677777777777777766555555543
No 370
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.47 E-value=3e+02 Score=25.06 Aligned_cols=59 Identities=15% Similarity=0.154 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008304 475 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (570)
Q Consensus 475 EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LE 533 (570)
.+-.++..++.++...+..-.+-+.|....+.+...|..|++++..+++++......++
T Consensus 111 ~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~ 169 (218)
T cd07596 111 DRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYE 169 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555444455666666666666655554444333
No 371
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=39.41 E-value=98 Score=33.04 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (570)
Q Consensus 483 Leks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq 522 (570)
+.+-++..+.|..+|..|....++-..++..+++++++|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 24 LKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455677888888888888877777777777777775
No 372
>PLN03188 kinesin-12 family protein; Provisional
Probab=39.03 E-value=1.4e+02 Score=37.09 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHH
Q 008304 476 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 515 (570)
Q Consensus 476 KfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk 515 (570)
|-|||||++.--++.|+-|+ |-++||+....-....
T Consensus 1099 ~~a~q~am~ghar~~e~ya~----l~ek~~~ll~~hr~i~ 1134 (1320)
T PLN03188 1099 KEAMQMAMEGHARMLEQYAD----LEEKHIQLLARHRRIQ 1134 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 45788888888888888875 6777877655433333
No 373
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=39.02 E-value=4e+02 Score=26.46 Aligned_cols=70 Identities=13% Similarity=0.090 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~E 538 (570)
-|-..|+.+...=+...+.+++..+-.|.-.-+ ..-|..-..+-.|++++-+++.-+..+...++.+...
T Consensus 135 ll~~il~~ivd~~~~~l~~l~~~~~~le~~l~~-----~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~ 204 (318)
T TIGR00383 135 LLYDIFDAIIDSYFPLLENIEDELEELEDEIIS-----GPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRK 204 (318)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 355556666666666666666554444332211 1235666788899999999999999999888888643
No 374
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=39.00 E-value=1.2e+02 Score=29.11 Aligned_cols=77 Identities=19% Similarity=0.332 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQR--SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqR--aLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
..|++.|+.|.++=-.+-+ +....-..-+.|+..++.....| |.+++..+.+|++.+.......-.+-+|+=
T Consensus 2 ~~L~~~l~~L~~~~~~~d~~~~~~~~~~Fd~~LF~~~~~~L~~y------l~Ei~~~l~~L~~~~~~~~~~~~~~laEkL 75 (173)
T PF07445_consen 2 QQLEQQLQQLAQQAAQLDRQRGEQHQARFDRQLFSCRSQRLSDY------LQEIEQTLAQLQQQVEQNRLQQVAFLAEKL 75 (173)
T ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhccHHHHhccCchHHHH------HHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4677778777765433322 33555566677887777665444 677777777777777666555556666666
Q ss_pred HHHhh
Q 008304 541 NVRLE 545 (570)
Q Consensus 541 aArle 545 (570)
.+|.+
T Consensus 76 ~~Q~~ 80 (173)
T PF07445_consen 76 VAQIE 80 (173)
T ss_pred HHHHH
Confidence 66644
No 375
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=38.96 E-value=3.4e+02 Score=26.96 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008304 477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528 (570)
Q Consensus 477 faLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQ 528 (570)
..|..++..-....|.+|..+..+....|+-...+..|..+|++.+..++.+
T Consensus 61 gs~~~a~~~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~~RK~~ke~ 112 (234)
T cd07652 61 GSFSNAYHSSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEKSRKSIKET 112 (234)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666777777777777766665556666666666555544443
No 376
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.90 E-value=3.3e+02 Score=30.84 Aligned_cols=66 Identities=18% Similarity=0.406 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 532 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~L 532 (570)
-||.-+|++-++|-+|+-++.++++ ..+---..|..+.-..-..+..|+..+-+++.+++-|+..|
T Consensus 303 qlqrdlE~~~~~r~ele~~~~qs~e---d~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~~vq~qma~l 368 (542)
T KOG0993|consen 303 QLQRDLEELIETRAELEHTEQQSQE---DITVQRAQLLEERQHSEDLLVTLQAEISQAQSEVQKQMARL 368 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666688888888888888877664 22222223333333334445556666666666666665544
No 377
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=38.88 E-value=3.8e+02 Score=31.22 Aligned_cols=93 Identities=17% Similarity=0.269 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHhhhhHHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI---KVQLVELESFRNEYA 540 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei---~aQl~~LEs~~~Erd 540 (570)
.||=.++|+.. +|.+..++....+=.+..|-..|.+........|..++++++..+++- -+++.+|+.+|.-..
T Consensus 42 kLql~~qe~~~---~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~ 118 (766)
T PF10191_consen 42 KLQLYSQEVNA---SLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRME 118 (766)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 45555555553 355555555555556666666666666666666666666666555432 256777888888888
Q ss_pred HHHhhhhhHHHHHHHHHHhh
Q 008304 541 NVRLECNAADERAKILASEV 560 (570)
Q Consensus 541 aArle~~aA~ERak~LAaEV 560 (570)
+|+....+|+.=+. |.+||
T Consensus 119 ~a~~~L~EA~~w~~-l~~~v 137 (766)
T PF10191_consen 119 AARETLQEADNWST-LSAEV 137 (766)
T ss_pred HHHHHHHHHHhHHH-HHHHH
Confidence 88888888877664 44444
No 378
>PRK00736 hypothetical protein; Provisional
Probab=38.74 E-value=2e+02 Score=23.99 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~a 527 (570)
+++-|++| ++|+++|- +--+.|-+-.=+|..++..|++.|..|.+.++.
T Consensus 3 ~e~Ri~~L-E~klafqe-------------~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTEL-EIRVAEQE-------------KTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHH-HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 379
>PHA02816 hypothetical protein; Provisional
Probab=38.64 E-value=20 Score=32.22 Aligned_cols=29 Identities=34% Similarity=0.524 Sum_probs=24.4
Q ss_pred cccccccceeeecCCCCCCCCCccccccc
Q 008304 54 QHHLEADRVRVTDLDGAGTSDGPDKAVVS 82 (570)
Q Consensus 54 ~~~le~~~vrvtd~dgag~sdg~~~~v~~ 82 (570)
+.++.-|+|.+.|+|||.-||....+|++
T Consensus 37 kkaisiervtlldsdgandsdsssntvss 65 (106)
T PHA02816 37 KKAISIERVTLLDSDGANDSDSSSNTVSS 65 (106)
T ss_pred hheeeEEEEEEeccCCCCCccccCccccc
Confidence 45667789999999999999988777766
No 380
>PRK14146 heat shock protein GrpE; Provisional
Probab=38.56 E-value=1.2e+02 Score=30.35 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 008304 513 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVI 561 (570)
Q Consensus 513 qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV 561 (570)
.|+.+++.|+.+++...-.+--+.+|.+|+|-+...-.++++..|.|-+
T Consensus 58 ~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~ 106 (215)
T PRK14146 58 SLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSL 106 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445556666666666666666666655543
No 381
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=38.46 E-value=3.5e+02 Score=27.30 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=50.4
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhh
Q 008304 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK 566 (570)
Q Consensus 492 sLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk 566 (570)
.|.+++.-+-+--..+...++.|+-||...+.+-+.=...-...+.|-.+.+.+-.+|..+-+.|=.-|-.||-+
T Consensus 109 ~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 109 QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777777777777777777766655444444445566666666667777777777777777666654
No 382
>PLN02678 seryl-tRNA synthetase
Probab=38.40 E-value=2.1e+02 Score=31.58 Aligned_cols=34 Identities=9% Similarity=0.268 Sum_probs=15.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008304 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 532 (570)
Q Consensus 499 ALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~L 532 (570)
+|.....+...++.+|..++..++++|...++.|
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444444444444444444444444444444433
No 383
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=38.15 E-value=3e+02 Score=30.71 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAEN 497 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~EN 497 (570)
.+++...-+.=.||-+.|+.+.++|+.+++..|-...|-
T Consensus 291 r~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEA 329 (442)
T PF06637_consen 291 RAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEA 329 (442)
T ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445556777778999999988888877655443
No 384
>PRK14161 heat shock protein GrpE; Provisional
Probab=37.78 E-value=1.3e+02 Score=29.43 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq 522 (570)
+.--+|.|-+..+|-++ -.++-.+.|..+...+.++|=+.......+++.+++=.
T Consensus 6 ~~~~~~~~~~~~~~~~~------~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~ 60 (178)
T PRK14161 6 IENNEQTINDIAEEIVE------TANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKAR 60 (178)
T ss_pred ccccHHHHHHHHHhhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33346777776655443 33333455666777777766554444444444444333
No 385
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=37.68 E-value=2.4e+02 Score=23.56 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 008304 464 ALEQHIEDLTQE 475 (570)
Q Consensus 464 aLqQhIeDLT~E 475 (570)
.+++.|++|+++
T Consensus 30 ~~~~ti~~l~~~ 41 (90)
T PF06103_consen 30 EVNKTIDTLQEQ 41 (90)
T ss_pred HHHHHHHHHHHh
Confidence 334444444433
No 386
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=37.66 E-value=94 Score=28.77 Aligned_cols=62 Identities=19% Similarity=0.442 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQ-EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~-EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~ 526 (570)
.+.++.|++.++.|.. ++-+..++++.+++.-+ | .||......+.+|+ ++...+.+|+++++
T Consensus 9 ~~g~~~L~~eL~~l~~~~r~~~~~~~~~A~~~gd-l-~En~~y~~a~~~~~----~~~~ri~~l~~~L~ 71 (157)
T PRK00226 9 QEGYEKLEEELEELKTVERPEIIEAIAEAREHGD-L-SENAEYHAAKEEQG----FIEGRIRELEDKLS 71 (157)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHcCC-c-cccccchHHHHHHH----HHHHHHHHHHHHHH
Confidence 5678999999999975 78888888888886553 2 56765555555554 45555666665543
No 387
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=37.62 E-value=3e+02 Score=27.67 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=53.3
Q ss_pred HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHH
Q 008304 488 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 551 (570)
Q Consensus 488 ~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~E 551 (570)
.|++.|-.+-..|..=.+.|......+...|+.++.-...+...|+.-+..|.++-.+...|..
T Consensus 78 ~ia~~L~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q 141 (242)
T cd07671 78 QLAGMLREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQ 141 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677776667777788899999999999999999999999999999999888777776643
No 388
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=37.48 E-value=1.7e+02 Score=29.44 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=15.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008304 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (570)
Q Consensus 500 LTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~ 536 (570)
|.+..+.+...+-+|...|++|++||..-+..+|.+.
T Consensus 45 le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~ 81 (263)
T PRK10803 45 LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQ 81 (263)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444444444444444444444444433
No 389
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=37.43 E-value=2.8e+02 Score=24.15 Aligned_cols=72 Identities=21% Similarity=0.284 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 468 hIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
.+.-|..|+..+...+..+++-.+.+-+++. =--+..+|..++.+-+.=+-..++-|..-..+|+.|=.+..
T Consensus 8 ~vkRL~KE~~~Y~kE~~~q~~rle~~k~~~~-de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~ 79 (90)
T PF02970_consen 8 VVKRLLKEEASYEKEVEEQEARLEKMKAEGE-DEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEEE 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCc
Confidence 5678899999999999999999999999976 55578899999999888888888888888888888854443
No 390
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=37.38 E-value=3.8e+02 Score=25.64 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRA 488 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~ 488 (570)
+++..+++.+-.....+-.|.|-++...+
T Consensus 37 ~~l~~a~~~~a~~~a~~~~le~~~~~~~~ 65 (221)
T PF04012_consen 37 EQLRKARQALARVMANQKRLERKLDEAEE 65 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 391
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=37.25 E-value=4.2e+02 Score=26.21 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQ 480 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLq 480 (570)
..+.+.++..++.+..+.-.++
T Consensus 79 ~~~l~~a~a~l~~~~~~~~~~~ 100 (334)
T TIGR00998 79 ELALAKAEANLAALVRQTKQLE 100 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544443333
No 392
>PRK12717 flgL flagellar hook-associated protein FlgL; Provisional
Probab=37.15 E-value=4.3e+02 Score=29.51 Aligned_cols=69 Identities=17% Similarity=0.271 Sum_probs=48.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhh-------HHHHHHHHHHhhhhhhhhhhcC
Q 008304 501 TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA-------ADERAKILASEVIGLEEKVRSL 570 (570)
Q Consensus 501 TdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~a-------A~ERak~LAaEVV~LEEk~lqL 570 (570)
.-+++++-..+++.++-+...+.-+..+...|.++..=..++|.-+.. +.+|. .+|.|+-.|.+.++.|
T Consensus 49 ~~~l~~~~~~l~qy~~Ni~~a~~~L~~~esaL~~i~~~lqr~rel~vqa~ngt~s~~dr~-aia~El~~l~~~l~~~ 124 (523)
T PRK12717 49 LLQLQQQQAMLDQYSGNITTIKNSLTQEESTLTSINDTLQRARELAVSAGNGGLTDADRK-AIASELKQIEAQLLGL 124 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHHHHHH
Confidence 346677777777777777777777777888888877666666633322 34454 8999999998887653
No 393
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=37.05 E-value=3.2e+02 Score=24.80 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=20.4
Q ss_pred HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008304 493 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (570)
Q Consensus 493 LA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaA 542 (570)
|...++.|.++..+....+..++.+..+|+.+++.....+...+.|....
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444444444444444444333
No 394
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=37.02 E-value=1.3e+02 Score=26.80 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVR 568 (570)
Q Consensus 512 ~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~l 568 (570)
-.|+..+.+|++++..-....+.+..+.-.+....+ .++|+.++-+.+.+|..+.
T Consensus 4 ~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~--~~~A~~~lk~~k~~~k~~~ 58 (171)
T PF03357_consen 4 LKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGN--KERAKIYLKRKKRLEKQLE 58 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555554444 7888888888888887654
No 395
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=36.96 E-value=1.9e+02 Score=30.84 Aligned_cols=52 Identities=25% Similarity=0.274 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008304 475 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (570)
Q Consensus 475 EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~ 526 (570)
-|.|--|==+|+|+=.|.|-+|-+.|+++=-+.+.+++.|.++|..|++=|.
T Consensus 235 nk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 235 NKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557788889999999999999999999876666677777777766665443
No 396
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=36.79 E-value=1.6e+02 Score=33.21 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 008304 479 LQRSLEASRALSESLAAENSSLTDSY 504 (570)
Q Consensus 479 LqRaLeks~~laEsLA~ENsALTdry 504 (570)
||..|+++|+=.+.+|.|---|-++-
T Consensus 264 lQk~Lekar~e~rnvavek~~lerkl 289 (575)
T KOG4403|consen 264 LQKRLEKAREEQRNVAVEKLDLERKL 289 (575)
T ss_pred HHHHHHHHHHhhhchhhhhhhHHHHH
Confidence 34445555555555555544444443
No 397
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=36.76 E-value=3.5e+02 Score=25.16 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=9.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 008304 502 DSYNQQRSVVNQLKSEMEKLQE 523 (570)
Q Consensus 502 dryNqQ~~~v~qLk~dmErLq~ 523 (570)
+.||........|+.+++.|+.
T Consensus 27 ~~~~~l~~~~~~l~~e~~~l~~ 48 (136)
T PF04871_consen 27 QAESSLEQENKRLEAEEKELKE 48 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 398
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=36.69 E-value=2.5e+02 Score=29.58 Aligned_cols=53 Identities=25% Similarity=0.289 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (570)
Q Consensus 483 Leks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~ 535 (570)
|+--++-.+.|-.||+.|--.||+-...+..|..+..+|++.++-..-++.-+
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 33333444444445555555555555555555555555544444433333333
No 399
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=36.56 E-value=3.4e+02 Score=27.17 Aligned_cols=61 Identities=13% Similarity=0.227 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhh
Q 008304 488 ALSESLAAENSS-LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 548 (570)
Q Consensus 488 ~laEsLA~ENsA-LTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~a 548 (570)
.+++.|.+|++. |..=...+...+..++..|+.++..+.....+++..+..|..+-.+...
T Consensus 78 ~la~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke~e~ 139 (233)
T cd07649 78 KFSSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKDLEG 139 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666633 4333445566788888999999999988888888888877655444433
No 400
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=36.54 E-value=3.9e+02 Score=27.98 Aligned_cols=6 Identities=33% Similarity=0.899 Sum_probs=2.5
Q ss_pred HHHHHH
Q 008304 537 NEYANV 542 (570)
Q Consensus 537 ~ErdaA 542 (570)
.||...
T Consensus 225 dEyEkl 230 (267)
T PF10234_consen 225 DEYEKL 230 (267)
T ss_pred HHHHHH
Confidence 444433
No 401
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=36.34 E-value=4.3e+02 Score=26.00 Aligned_cols=9 Identities=11% Similarity=0.239 Sum_probs=6.2
Q ss_pred cccccCCCc
Q 008304 336 VPVSSATNK 344 (570)
Q Consensus 336 ~P~~S~~~e 344 (570)
+|++-..|.
T Consensus 12 LPYiD~~~~ 20 (221)
T PF05700_consen 12 LPYIDPDYD 20 (221)
T ss_pred CCCCCCCCC
Confidence 777777663
No 402
>PRK10869 recombination and repair protein; Provisional
Probab=36.28 E-value=5.6e+02 Score=28.63 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHH
Q 008304 521 LQEEIKVQLVELESFRNEYANVRLECNAADERAKILA 557 (570)
Q Consensus 521 Lq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LA 557 (570)
+.++++.++..++.........+.++..+.++...+|
T Consensus 325 ~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A 361 (553)
T PRK10869 325 HHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETA 361 (553)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444
No 403
>PRK11519 tyrosine kinase; Provisional
Probab=36.17 E-value=2.8e+02 Score=31.55 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhc
Q 008304 549 ADERAKILASEVIGLEEKVRS 569 (570)
Q Consensus 549 A~ERak~LAaEVV~LEEk~lq 569 (570)
+.+|-+.|-.++-.|+.++..
T Consensus 344 l~~~~~~L~~~~~~l~~~~~~ 364 (719)
T PRK11519 344 LLEKRKALEDEKAKLNGRVTA 364 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444445566666666666543
No 404
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=35.93 E-value=78 Score=28.21 Aligned_cols=9 Identities=33% Similarity=0.254 Sum_probs=3.8
Q ss_pred HHHHHHHhh
Q 008304 537 NEYANVRLE 545 (570)
Q Consensus 537 ~ErdaArle 545 (570)
+|+++.++.
T Consensus 68 Ee~AR~~Lg 76 (105)
T PRK00888 68 EERARNELG 76 (105)
T ss_pred HHHHHHHcC
Confidence 444444443
No 405
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=35.89 E-value=4.7e+02 Score=26.29 Aligned_cols=65 Identities=14% Similarity=0.241 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHH
Q 008304 487 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 551 (570)
Q Consensus 487 ~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~E 551 (570)
..|+++|..+-..|..=.+.|......++..|+.++.....|.-.|+.-+..|..+-.+...|..
T Consensus 78 ~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~ 142 (240)
T cd07672 78 IQLAQTLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQ 142 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666655545555577777788888999999999888998898888887766555554444
No 406
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=35.81 E-value=5.4e+02 Score=27.70 Aligned_cols=80 Identities=20% Similarity=0.334 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRA-----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~-----------laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~ 531 (570)
||++.|=+-.|.+ --|.++++++++ =+-.|-+.|+-|+.+.-.--..++-|+-++-..+.-++-.-+.
T Consensus 102 aAi~d~dqsq~sk-rdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~ 180 (305)
T PF14915_consen 102 AAIQDHDQSQTSK-RDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLA 180 (305)
T ss_pred HHHhhHHHHHhhH-HHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554444544 345666666665 2445677788888877777777777877777777777777777
Q ss_pred hhhhHHHHHHHH
Q 008304 532 LESFRNEYANVR 543 (570)
Q Consensus 532 LEs~~~ErdaAr 543 (570)
||.+..+..-++
T Consensus 181 lE~~QrdL~Qtq 192 (305)
T PF14915_consen 181 LESVQRDLSQTQ 192 (305)
T ss_pred HHHHHHHHHHHH
Confidence 777665554444
No 407
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=35.72 E-value=12 Score=41.93 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304 513 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 513 qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~L 556 (570)
+|+..+..++.++......++.++.+.+..+.++.+++++-..|
T Consensus 175 ~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L 218 (722)
T PF05557_consen 175 ELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQEL 218 (722)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444445555555554444
No 408
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=35.71 E-value=2.1e+02 Score=34.92 Aligned_cols=11 Identities=27% Similarity=0.588 Sum_probs=4.6
Q ss_pred hhHHHHHHHHH
Q 008304 460 EDFAALEQHIE 470 (570)
Q Consensus 460 ddFAaLqQhIe 470 (570)
.+.+.|++.++
T Consensus 149 ~~~~~l~~~~~ 159 (1123)
T PRK11448 149 QEVLTLKQQLE 159 (1123)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 409
>TIGR02780 TrbJ_Ti P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.
Probab=35.71 E-value=4.7e+02 Score=26.23 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=45.1
Q ss_pred cccccc--cccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHH
Q 008304 449 NQHGFY--STKHNEDFAALEQHIEDL-TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS 509 (570)
Q Consensus 449 ~~~~F~--s~~~~ddFAaLqQhIeDL-T~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~ 509 (570)
.|.+|+ ......+...+.++-... ...+.++.-+|+.+-.+++.|.+++..|.+=-++-.+
T Consensus 111 ~y~~~~~y~~~~~~~~~~~~~~~~~ws~~~~~~~~~al~~~~~~~~~~~~~~~~l~~L~~~sq~ 174 (246)
T TIGR02780 111 LYQGYDSYAASSGSDRQNMSDAYARWAQTTRDTAEDALSMAGLQTGNLAEDNATLDQLQSLSQS 174 (246)
T ss_pred HCcChhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcC
Confidence 344553 233356666777777777 7788899999999999999999999998876665433
No 410
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.55 E-value=1.3e+02 Score=23.61 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=16.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008304 502 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (570)
Q Consensus 502 dryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs 534 (570)
++|+.....-+.|+.+-+.|.+|.+....++..
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554444433333
No 411
>PHA02047 phage lambda Rz1-like protein
Probab=35.52 E-value=2.5e+02 Score=25.92 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008304 480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 480 qRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl 529 (570)
.|.+-...+-++.|+..-+++--+|++--..|.+|...-|+..+||+--|
T Consensus 26 ~r~~g~~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL 75 (101)
T PHA02047 26 YRALGIAHEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRAL 75 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788889999999999999999988889999888888888877544
No 412
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=35.37 E-value=3.7e+02 Score=25.01 Aligned_cols=74 Identities=23% Similarity=0.295 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~ 536 (570)
++|+.-=.++---=-+|++.|+.-..=-+.|+.+.+.|...-|....+-..+...+..|+.+|.--+..|+.-+
T Consensus 5 ~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK 78 (107)
T PF09304_consen 5 EALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEK 78 (107)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555678889998888889999999999988888888877777777777777766666665533
No 413
>PRK14153 heat shock protein GrpE; Provisional
Probab=35.21 E-value=1.1e+02 Score=30.47 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=16.7
Q ss_pred HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008304 493 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (570)
Q Consensus 493 LA~ENsALTdryNqQ~~~v~qLk~dmErLq~E 524 (570)
|-.+...|.++|-+.......+++.+++=.++
T Consensus 45 l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~ 76 (194)
T PRK14153 45 CREEIESLKEQLFRLAAEFDNFRKRTAREMEE 76 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666655555555555554444433
No 414
>PRK10869 recombination and repair protein; Provisional
Probab=35.15 E-value=3e+02 Score=30.65 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhh
Q 008304 548 AADERAKILASEVIGLEEKVR 568 (570)
Q Consensus 548 aA~ERak~LAaEVV~LEEk~l 568 (570)
..+++-..|-.++-.|+++++
T Consensus 338 ~~e~~l~~Le~e~~~l~~~l~ 358 (553)
T PRK10869 338 DQEDDLETLALAVEKHHQQAL 358 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554443
No 415
>PF13166 AAA_13: AAA domain
Probab=35.04 E-value=6.7e+02 Score=27.83 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=7.6
Q ss_pred hhhHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDL 472 (570)
Q Consensus 459 ~ddFAaLqQhIeDL 472 (570)
.+-...|++|+++-
T Consensus 268 ~~~~~~l~~~f~~~ 281 (712)
T PF13166_consen 268 EERKERLEKYFDEE 281 (712)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455666666553
No 416
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=34.90 E-value=1e+02 Score=34.11 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLE 484 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLe 484 (570)
.+.+.||+.|++|.+++-+|...|+
T Consensus 568 ~~~~~~e~~i~~le~~~~~~~~~~~ 592 (635)
T PRK11147 568 RELEQLPQLLEDLEAEIEALQAQVA 592 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3377788888888777777665553
No 417
>PRK12765 flagellar capping protein; Provisional
Probab=34.83 E-value=1.7e+02 Score=33.08 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQ 528 (570)
.|+..|+.|++++-+++|-|+.-.+ .|+.+|++--..|.+|......|.+.|.+.
T Consensus 536 ~l~~~~~~l~~~~~~~~~rl~~~~~----------r~~~qf~alD~~i~~l~~t~s~l~~~~~~~ 590 (595)
T PRK12765 536 SLTNEIKSLTTSKESTQELIDTKYE----------TMANKWLQYDSIIAKLEQQFSTLKNMINAA 590 (595)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555566666666666665554322 345567766677777777777777666553
No 418
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=34.82 E-value=2.6e+02 Score=31.54 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=5.4
Q ss_pred HHHHHHHhhhHHHH
Q 008304 489 LSESLAAENSSLTD 502 (570)
Q Consensus 489 laEsLA~ENsALTd 502 (570)
+.+.|..|...+++
T Consensus 103 i~~av~~~~~~~~~ 116 (472)
T TIGR03752 103 IQQAVQSETQELTK 116 (472)
T ss_pred HHHHHHhhhHHHHH
Confidence 33333344433333
No 419
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=34.64 E-value=1.5e+02 Score=28.07 Aligned_cols=62 Identities=11% Similarity=0.201 Sum_probs=41.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008304 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 525 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei 525 (570)
-.+.|+.|++-+++|..++-.+.+.++.+++.-+ -.||.. |-+.......+...+..|+..|
T Consensus 9 T~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GD--lsENae----y~aak~~q~~~e~RI~~L~~~L 70 (158)
T PRK05892 9 APAARDHLEAELARLRARRDRLAVEVNDRGMIGD--HGDQAE----AIQRADELARLDDRINELDRRL 70 (158)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC--cchhhh----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999998888888888877776554 244443 4444444555555666555443
No 420
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=34.45 E-value=3.8e+02 Score=30.53 Aligned_cols=73 Identities=29% Similarity=0.414 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----------------HHHhhhhH
Q 008304 475 EKFALQRSLEASRALSESL-AAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-----------------LVELESFR 536 (570)
Q Consensus 475 EKfaLqRaLeks~~laEsL-A~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQ-----------------l~~LEs~~ 536 (570)
||+-|.|-|..+..|-|.= ..||+.... ++++|+..+++-+.|+.+. .+++.-..
T Consensus 281 ek~~lerkl~ea~rl~elreg~e~e~~rk-------elE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~ 353 (575)
T KOG4403|consen 281 EKLDLERKLDEAPRLSELREGVENETSRK-------ELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYN 353 (575)
T ss_pred hhhhHHHHHhhhhhhhhhhcchhHHHHHH-------HHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4777777777655554432 234444431 5666666666666666543 23333344
Q ss_pred HHHHHHHhhhhhHHHHHH
Q 008304 537 NEYANVRLECNAADERAK 554 (570)
Q Consensus 537 ~ErdaArle~~aA~ERak 554 (570)
.-|.+|..+...|.|-+.
T Consensus 354 kkrqnaekql~~Ake~~e 371 (575)
T KOG4403|consen 354 KKRQNAEKQLKEAKEMAE 371 (575)
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 556667666666666543
No 421
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=34.42 E-value=1.1e+02 Score=34.39 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 008304 487 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN 547 (570)
Q Consensus 487 ~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~ 547 (570)
+++-+-|+.+|+.|+...|.....|.++...+=+|++.+.-+ .+|.++|.+.+.
T Consensus 412 ~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~-------q~e~t~ak~~~q 465 (514)
T KOG4370|consen 412 QEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLL-------QEENTNAKQQFQ 465 (514)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhcchhhhhhhc
Confidence 345566788899999999999999999998888888654333 345555554443
No 422
>PF13514 AAA_27: AAA domain
Probab=34.42 E-value=5.4e+02 Score=30.84 Aligned_cols=92 Identities=21% Similarity=0.147 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAEN---------SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 530 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~EN---------sALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~ 530 (570)
..+.++-..++++....-.+.+..++..++.+.|.+.- ..+.+...+......+...++++|++++.....
T Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~ 687 (1111)
T PF13514_consen 608 ARREAALEAAEELRAARAELEALRARRAAARAALAAALAALGPAEELAALLEEAEALLEEWEQAAARREQLEEELQQLEQ 687 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666655555555442 222322222333333333344444444444444
Q ss_pred HhhhhHHHHHHHHhhhhhHHH
Q 008304 531 ELESFRNEYANVRLECNAADE 551 (570)
Q Consensus 531 ~LEs~~~ErdaArle~~aA~E 551 (570)
.++....+...++.+..++.+
T Consensus 688 ~~~~~~~~~~~~~~~~~~~~~ 708 (1111)
T PF13514_consen 688 ELEEAEAELQEAQEALEEWQE 708 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333
No 423
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=34.41 E-value=6.2e+02 Score=27.26 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=7.9
Q ss_pred HHHHHhhhhhhhh
Q 008304 554 KILASEVIGLEEK 566 (570)
Q Consensus 554 k~LAaEVV~LEEk 566 (570)
..|-.|-|.||..
T Consensus 159 e~Lr~EKVdlEn~ 171 (310)
T PF09755_consen 159 ERLRREKVDLENT 171 (310)
T ss_pred HHHHHHHHhHHHH
Confidence 3566666666654
No 424
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.19 E-value=5.8e+02 Score=29.62 Aligned_cols=82 Identities=23% Similarity=0.253 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304 467 QHIEDLTQEKFALQRSLEASR---ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (570)
Q Consensus 467 QhIeDLT~EKfaLqRaLeks~---~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr 543 (570)
.-|+-|-.+...|.--++.|. +=++..-.|+.+|.+..|.-+.....|..++=.+..+++.+--+++..-.+++-++
T Consensus 308 eE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~ 387 (581)
T KOG0995|consen 308 EEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLI 387 (581)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444442 33455566777777777777777777777777777777777777777777777666
Q ss_pred hhhhh
Q 008304 544 LECNA 548 (570)
Q Consensus 544 le~~a 548 (570)
....-
T Consensus 388 ~~i~l 392 (581)
T KOG0995|consen 388 RRIKL 392 (581)
T ss_pred HHHHH
Confidence 55443
No 425
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=34.14 E-value=2.8e+02 Score=23.16 Aligned_cols=69 Identities=19% Similarity=0.272 Sum_probs=35.9
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008304 465 LEQHIEDLTQ------EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (570)
Q Consensus 465 LqQhIeDLT~------EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~ 536 (570)
|++.||.+.. ..|.+.|.|+.. ++.+..+.......|-+..+.-+-...+..++..+|+..+..+..+.
T Consensus 3 le~f~d~~~~LP~el~r~l~~irelD~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~ 77 (105)
T PF12998_consen 3 LEDFLDSLENLPAELQRNLTLIRELDAK---SQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALELS 77 (105)
T ss_dssp HHHHHTSGGGHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555543 455666666655 66677777777777776665421111233444444444444333333
No 426
>KOG4815 consensus Muscular protein implicated in muscular dystrophy phenotype [General function prediction only]
Probab=34.13 E-value=1.5e+02 Score=32.45 Aligned_cols=62 Identities=31% Similarity=0.470 Sum_probs=34.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHhhhhhH-----------HHHHHHHHHhhhhhh
Q 008304 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL----ESFRNEYANVRLECNAA-----------DERAKILASEVIGLE 564 (570)
Q Consensus 500 LTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~L----Es~~~ErdaArle~~aA-----------~ERak~LAaEVV~LE 564 (570)
-+|+||+|- .++.+.+-|+..++-...+ +.+++| .+||+|+.+- -|..+.|..-+-.||
T Consensus 284 tmdqynqql-----mrsqldqaqq~~qvag~qv~llkdql~ae-~~arleaqarthqll~ankdlle~iq~lv~~lq~le 357 (511)
T KOG4815|consen 284 TMDQYNQQL-----MRSQLDQAQQQTQVAGAQVHLLKDQLAAE-AAARLEAQARTHQLLLANKDLLEHIQLLVKQLQELE 357 (511)
T ss_pred hHHHHHHHH-----HHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 478899884 3455556666555433333 233344 4677776543 244555666666666
Q ss_pred hhh
Q 008304 565 EKV 567 (570)
Q Consensus 565 Ek~ 567 (570)
-|+
T Consensus 358 ~ki 360 (511)
T KOG4815|consen 358 LKI 360 (511)
T ss_pred Hhh
Confidence 654
No 427
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=34.09 E-value=9.6e+02 Score=30.00 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=22.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhhhhhh
Q 008304 536 RNEYANVRLECNAADERAKILASEVIGLEEK 566 (570)
Q Consensus 536 ~~ErdaArle~~aA~ERak~LAaEVV~LEEk 566 (570)
+.-|.--.-.+.--.++...|..+++.||++
T Consensus 515 keQ~kt~~~qye~~~~k~eeLe~~l~~lE~E 545 (1195)
T KOG4643|consen 515 KEQYKTCDIQYELLSNKLEELEELLGNLEEE 545 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3444444455667788899999999999875
No 428
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=34.06 E-value=1.9e+02 Score=34.34 Aligned_cols=88 Identities=22% Similarity=0.260 Sum_probs=56.0
Q ss_pred HHHHHHHH-HHHHHHHHH----HHHHHhhhHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHh-----hhhHHHHH
Q 008304 474 QEKFALQR-SLEASRALS----ESLAAENSSLTDSYNQQRSVV---NQLKSEMEKLQEEIKVQLVEL-----ESFRNEYA 540 (570)
Q Consensus 474 ~EKfaLqR-aLeks~~la----EsLA~ENsALTdryNqQ~~~v---~qLk~dmErLq~Ei~aQl~~L-----Es~~~Erd 540 (570)
++||.++| .+.++.... --|-+.-+.|.+-||+.-..+ -.||.+|+.|+.+++++.+.- +.|+.|..
T Consensus 485 k~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~ 564 (762)
T PLN03229 485 QERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEIN 564 (762)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHH
Confidence 46888999 888875411 125566888999999987664 379999999999998665533 23344433
Q ss_pred HHHhh---hhhHHHHHHHHHHhhh
Q 008304 541 NVRLE---CNAADERAKILASEVI 561 (570)
Q Consensus 541 aArle---~~aA~ERak~LAaEVV 561 (570)
-=..+ -.+-.|...++=+||.
T Consensus 565 kki~e~~~~~~~kek~ea~~aev~ 588 (762)
T PLN03229 565 KKFKEVMDRPEIKEKMEALKAEVA 588 (762)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHH
Confidence 32222 2334455555555554
No 429
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.95 E-value=6.8e+02 Score=27.60 Aligned_cols=64 Identities=19% Similarity=0.279 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008304 465 LEQHIEDLTQEKFA--LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528 (570)
Q Consensus 465 LqQhIeDLT~EKfa--LqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQ 528 (570)
|+-.|-.+-+||+. ++..+++.+++.++|.+-.+.|-.-.|....+++.|+.++-.|+..|.+.
T Consensus 207 irasvisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL 272 (365)
T KOG2391|consen 207 IRASVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDIL 272 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 55555566666653 44567777777788887777777777766666666666666555555443
No 430
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=33.84 E-value=1.3e+02 Score=28.45 Aligned_cols=15 Identities=20% Similarity=0.508 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHH
Q 008304 510 VVNQLKSEMEKLQEE 524 (570)
Q Consensus 510 ~v~qLk~dmErLq~E 524 (570)
-...|+.+++.|+.+
T Consensus 12 g~~~L~~EL~~L~~~ 26 (158)
T PRK05892 12 ARDHLEAELARLRAR 26 (158)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346677777777653
No 431
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.71 E-value=5.1e+02 Score=26.09 Aligned_cols=83 Identities=19% Similarity=0.210 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHH-----------------HHHHHHHHHHHHHHHHHHHHHh
Q 008304 470 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV-----------------VNQLKSEMEKLQEEIKVQLVEL 532 (570)
Q Consensus 470 eDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~-----------------v~qLk~dmErLq~Ei~aQl~~L 532 (570)
..|++|.......|+++++.=+.+..|=+...+.|-+--.. +.-++.++|+.++-........
T Consensus 120 ~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~~~k~~~~~~~~~~~~~~~~~~~~~~eK~k~k~~~~~~k~ 199 (241)
T cd07656 120 SQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLKC 199 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555544444444222222 2225566667777777777777
Q ss_pred hhhHHHHHHHHhhhhhHHHH
Q 008304 533 ESFRNEYANVRLECNAADER 552 (570)
Q Consensus 533 Es~~~ErdaArle~~aA~ER 552 (570)
...+.||-.+...+|+..++
T Consensus 200 ~~akNeYll~l~~aN~~~~~ 219 (241)
T cd07656 200 TKARNEYLLNLAAANATIHK 219 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77778888777777776554
No 432
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=33.57 E-value=1.9e+02 Score=23.55 Aligned_cols=47 Identities=32% Similarity=0.412 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 008304 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIG 562 (570)
Q Consensus 511 v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~ 562 (570)
+.++..++++++++++.+..+.+.++.|..... ..+|-..+|.+-.+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~-----~~~rIe~~Ar~~lg 72 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS-----RHERIEKIAKKQLG 72 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CHHHHHHHHHHhcC
Confidence 445566666666666666666666666655322 25666666655433
No 433
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=33.56 E-value=4.5e+02 Score=25.43 Aligned_cols=56 Identities=21% Similarity=0.282 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 008304 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538 (570)
Q Consensus 483 Leks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~E 538 (570)
|++..+..+....+........+++...+.+.+.+++.+..+....|-.+.++..|
T Consensus 94 L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAglT~e 149 (201)
T PF12072_consen 94 LDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAGLTAE 149 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 33333444444444444445566666667777777777766666666665555544
No 434
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.55 E-value=4.8e+02 Score=26.17 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR-----SVVNQLKSEMEKLQEEIKVQLVE 531 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~-----~~v~qLk~dmErLq~Ei~aQl~~ 531 (570)
......+|.+|+.+-.-+....-.+.++++.-..-..|-+...++.|.-. ..+..|++.++.-.++++.....
T Consensus 99 ~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke~e~~~~~~~~~k~~~s~~~~~K~~~K~~Ka~~e~~~~ve~ 176 (233)
T cd07649 99 KKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKDLEGKTQQLEIKLSNKTEEDIKKARRKSTQAGDDLMRCVDL 176 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566677777777777777777777777777776667666555544322 12455555555555555444433
No 435
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=33.53 E-value=2.1e+02 Score=30.80 Aligned_cols=32 Identities=13% Similarity=0.381 Sum_probs=12.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (570)
Q Consensus 500 LTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~ 531 (570)
|..+-.+.+..+.+|+.+++.+++++...++.
T Consensus 74 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 74 IKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444444444444444433333
No 436
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.44 E-value=4.5e+02 Score=26.42 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=37.9
Q ss_pred chhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008304 458 HNEDFAALEQHIEDLTQEKFA--LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~EKfa--LqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LE 533 (570)
...-.+.++++|+.-.+|.++ ++.|++...+-.+..+. ++++|+ ..+.+++..++.|.++++.|++.|.
T Consensus 53 ~~~~~~~~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~~----~~e~~~---~li~~~~~~~~~~~~~~e~qLv~lv 123 (234)
T COG1317 53 LESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEGR----VLERLA---KLIAEFQAELEALKEVVEKQLVQLV 123 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667766666643 33333333333322222 444444 4566677777777777877776653
No 437
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=33.40 E-value=4.7e+02 Score=28.11 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE 496 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~E 496 (570)
-.++.+|-.|.........|+..+..+++..++-...
T Consensus 91 ~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~ 127 (352)
T COG1566 91 AALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQ 127 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777777787777776665553
No 438
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.36 E-value=4.1e+02 Score=24.93 Aligned_cols=7 Identities=14% Similarity=0.434 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 008304 485 ASRALSE 491 (570)
Q Consensus 485 ks~~laE 491 (570)
++.++.+
T Consensus 79 e~~ei~~ 85 (126)
T PF07889_consen 79 EQKEISK 85 (126)
T ss_pred HHHHHHH
Confidence 3333333
No 439
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A ....
Probab=33.25 E-value=1.1e+02 Score=25.00 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=32.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008304 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (570)
Q Consensus 500 LTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaA 542 (570)
|.....+||..|-+||.+=. -..+|.+....|-.++.||...
T Consensus 1 L~~~I~~QG~~VR~LKa~ka-~k~~i~~aV~~Ll~LK~~~~~~ 42 (56)
T PF00458_consen 1 LEAQIAAQGDKVRKLKAEKA-DKEEIDAAVAKLLELKAELKEL 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999998633 2347888888888999888654
No 440
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.23 E-value=2.5e+02 Score=28.79 Aligned_cols=63 Identities=8% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHH--------HHhHHHHHHHHHHH----HHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHH
Q 008304 490 SESLAAENSSLTDSY--------NQQRSVVNQLKSEM----EKLQEEIKVQLVELESFRNEYANVRLECNAADER 552 (570)
Q Consensus 490 aEsLA~ENsALTdry--------NqQ~~~v~qLk~dm----ErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ER 552 (570)
.+.+|.+.+.+...- .+....+.+.+... ..++.++..++..|+..+..|+.|-.+.-.|..+
T Consensus 75 ~~~~a~q~e~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k 149 (252)
T cd07675 75 LNDYAGQREVVAEEMGHRVYGELMRYSHDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQS 149 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 441
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=33.23 E-value=6.2e+02 Score=26.92 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALS-----ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~la-----EsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~a 527 (570)
+=||.|..-+|=+.|=..|+.-++-. .+|.+.-..+-+.--+|...|.+|+++++.|+.+|+.
T Consensus 39 ~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 39 FYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666665544432 2455555555666667777777777777777777643
No 442
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=33.21 E-value=4.9e+02 Score=25.78 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304 479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (570)
Q Consensus 479 LqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~ 535 (570)
|...|.-.+......-.=....-..+=++...|.+-+..++.|.+++..-+.+++..
T Consensus 114 L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 114 LKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333444445555555555555544444444433
No 443
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=33.17 E-value=5.8e+02 Score=26.55 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008304 468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 525 (570)
Q Consensus 468 hIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei 525 (570)
-|++|..+=-.++-.|++.++-++.|-.+-..=+...+++...+.+.+..++....||
T Consensus 16 ~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei 73 (344)
T PF12777_consen 16 QVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEI 73 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333334444444444444444433333344444444444444444444443
No 444
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=33.02 E-value=1.6e+02 Score=30.05 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhH
Q 008304 515 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA 549 (570)
Q Consensus 515 k~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA 549 (570)
+++|.+.+++|+.-.--|.....|||-||-.|..-
T Consensus 25 ~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~L 59 (214)
T PF07795_consen 25 NEELRKREEQIAHLKDLLKKAYQERDEAREQLQKL 59 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544444555567888887777643
No 445
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=33.00 E-value=1.6e+02 Score=31.73 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 008304 511 VNQLKSEMEKLQEE 524 (570)
Q Consensus 511 v~qLk~dmErLq~E 524 (570)
+++|+.+...+..+
T Consensus 44 ~~~lr~~rn~~sk~ 57 (425)
T PRK05431 44 LEELQAERNALSKE 57 (425)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 446
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=32.86 E-value=3.2e+02 Score=23.52 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=33.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH------HHHHHHhhhhhHHHHHHHHHHhhh
Q 008304 506 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRN------EYANVRLECNAADERAKILASEVI 561 (570)
Q Consensus 506 qQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~------ErdaArle~~aA~ERak~LAaEVV 561 (570)
..-..+...+++.++.+.++.+.+..++.++. ++..++.++..|.++-..++.+++
T Consensus 91 ~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~ 152 (194)
T cd07307 91 KDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELI 152 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555666666666666666666666532 455666666666666666665554
No 447
>PRK14160 heat shock protein GrpE; Provisional
Probab=32.73 E-value=1.9e+02 Score=29.07 Aligned_cols=10 Identities=30% Similarity=0.076 Sum_probs=4.6
Q ss_pred hhhhHHHHHH
Q 008304 545 ECNAADERAK 554 (570)
Q Consensus 545 e~~aA~ERak 554 (570)
..-+--|||.
T Consensus 119 pVlDnLerAl 128 (211)
T PRK14160 119 PVLDNLERAA 128 (211)
T ss_pred hHHhHHHHHH
Confidence 3334445554
No 448
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=32.58 E-value=4.6e+02 Score=25.27 Aligned_cols=72 Identities=24% Similarity=0.229 Sum_probs=38.5
Q ss_pred HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH----HHHHHhhhhhHHHHHHHHHHhhhhhh
Q 008304 489 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE----YANVRLECNAADERAKILASEVIGLE 564 (570)
Q Consensus 489 laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~E----rdaArle~~aA~ERak~LAaEVV~LE 564 (570)
+-+.++.+|. +....+..|+.+.++|+.+.+........+..+ -|..+.++.+...+...|=+|+-.|+
T Consensus 37 ~Le~~~~~n~-------~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 37 LLESLASRNQ-------EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHhhh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555553 334456666666666665443322222222211 25666666666666666666666666
Q ss_pred hhh
Q 008304 565 EKV 567 (570)
Q Consensus 565 Ek~ 567 (570)
.++
T Consensus 110 ~~~ 112 (158)
T PF09744_consen 110 LKL 112 (158)
T ss_pred HHh
Confidence 544
No 449
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=32.58 E-value=1.1e+02 Score=28.43 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q 008304 509 SVVNQLKSEMEKLQE 523 (570)
Q Consensus 509 ~~v~qLk~dmErLq~ 523 (570)
..+.+|+++++.|+.
T Consensus 10 ~g~~~L~~eL~~l~~ 24 (157)
T PRK00226 10 EGYEKLEEELEELKT 24 (157)
T ss_pred HHHHHHHHHHHHHHh
Confidence 346778888888887
No 450
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=32.34 E-value=5.1e+02 Score=25.71 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008304 478 ALQRSLEASRALSESLAAENSSLTDSYN 505 (570)
Q Consensus 478 aLqRaLeks~~laEsLA~ENsALTdryN 505 (570)
.++-.+.++++.-...+.|++.+.+.|+
T Consensus 120 ~~~~~~~k~kk~y~~~~kE~e~a~~~~~ 147 (239)
T cd07658 120 DWRSEQIKVKKKLHGLARENEKLQDQVE 147 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555667777777777763
No 451
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=32.13 E-value=3.5e+02 Score=23.68 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHH
Q 008304 508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 554 (570)
Q Consensus 508 ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak 554 (570)
...|..|..+..+|-+++.......+.+..=-...-.....|+|.-+
T Consensus 38 e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 38 EEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555544444443333333322223333334444433
No 452
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=32.03 E-value=4.3e+02 Score=26.65 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 008304 487 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK--VQLVELESFRNEYANVRLECNAADERAKILASEVIGL 563 (570)
Q Consensus 487 ~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~--aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~L 563 (570)
.++-+.+.++-+.+.+.-=++...+.+|+.++.....-.. .=.........=+.+|..+.....+|+..+|..||++
T Consensus 29 deFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~a~~ea~~il~~a~~~a~~v~~~ 107 (212)
T COG3599 29 DEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDILKRASAQAQRVFGK 107 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 453
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=31.98 E-value=9e+02 Score=28.43 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304 532 LESFRNEYANVRLECNAADERAKILASEVIGLEEKVR 568 (570)
Q Consensus 532 LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~l 568 (570)
+.+..+|+-.+-.+.-.|.-|+..|=.||=.|.++..
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~ 266 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA 266 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444577777788888888898888888888887654
No 454
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=31.94 E-value=4.8e+02 Score=25.25 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHh
Q 008304 511 VNQLKSEMEKLQEEIKVQLVELESFRNE-YANVRL 544 (570)
Q Consensus 511 v~qLk~dmErLq~Ei~aQl~~LEs~~~E-rdaArl 544 (570)
-.+....++.++++++....+...++.| |+.+..
T Consensus 57 k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a 91 (155)
T PRK06569 57 TIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLES 91 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555555555 444433
No 455
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=31.86 E-value=2e+02 Score=31.22 Aligned_cols=36 Identities=11% Similarity=0.249 Sum_probs=14.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008304 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (570)
Q Consensus 499 ALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs 534 (570)
.|..+-.+...++.+|.+.|+++++.+..|-.++|.
T Consensus 410 ~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~ 445 (462)
T PRK08032 410 GVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDK 445 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444433
No 456
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=31.70 E-value=4e+02 Score=29.74 Aligned_cols=96 Identities=17% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHH
Q 008304 472 LTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 551 (570)
Q Consensus 472 LT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~E 551 (570)
|+..-....|.++ +-.+.|......+..+.+++...-+++.+.++.+.+++..=......+....++.+.+-..|.+
T Consensus 338 L~~~e~~~~~~l~---~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~ 414 (560)
T PF06160_consen 338 LNHNELEIVRELE---KQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEARE 414 (560)
T ss_pred CCchHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhhhhhhcC
Q 008304 552 RAKILASEVIGLEEKVRSL 570 (570)
Q Consensus 552 Rak~LAaEVV~LEEk~lqL 570 (570)
+...|-.++-.+--++.+.
T Consensus 415 ~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 415 KLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHHHHHHc
No 457
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=31.67 E-value=5.6e+02 Score=29.30 Aligned_cols=94 Identities=19% Similarity=0.258 Sum_probs=49.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--------HHhH---HHHHHHHHHHHHHHHHHH
Q 008304 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY--------NQQR---SVVNQLKSEMEKLQEEIK 526 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdry--------NqQ~---~~v~qLk~dmErLq~Ei~ 526 (570)
......-|+..|++||.--+-|=+-|.-.++=.+.+--|-+-.-+-| |+|+ +.++-|+-.+.+||++|.
T Consensus 477 ~~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~ 556 (583)
T KOG3809|consen 477 EREKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEIN 556 (583)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHH
Confidence 34467778888999988777666666665555554444433322222 1111 223344555555555554
Q ss_pred HHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHH
Q 008304 527 VQLVELESFRNEYANVRLECNAADERAKILAS 558 (570)
Q Consensus 527 aQl~~LEs~~~ErdaArle~~aA~ERak~LAa 558 (570)
-|. .|.+++|-..---.+|-+.|-+
T Consensus 557 d~~-------e~i~~~r~~IL~Ne~rIqk~i~ 581 (583)
T KOG3809|consen 557 DTK-------EEISKARGRILNNEKRIQKFIS 581 (583)
T ss_pred HHH-------HHHHHHHHHHhhhHHHHHHHHh
Confidence 444 4555555444444444444443
No 458
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=31.67 E-value=1.5e+02 Score=26.67 Aligned_cols=6 Identities=50% Similarity=0.850 Sum_probs=2.3
Q ss_pred HHHHHH
Q 008304 549 ADERAK 554 (570)
Q Consensus 549 A~ERak 554 (570)
..||||
T Consensus 90 i~e~AR 95 (117)
T COG2919 90 IEERAR 95 (117)
T ss_pred HHHHHH
Confidence 333433
No 459
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.60 E-value=8.7e+02 Score=29.79 Aligned_cols=58 Identities=26% Similarity=0.295 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----------HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 474 QEKFALQRSLEASRALSESLAAENSSLTDSY----------NQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (570)
Q Consensus 474 ~EKfaLqRaLeks~~laEsLA~ENsALTdry----------NqQ~~~v~qLk~dmErLq~Ei~aQl~~ 531 (570)
-|...||-.|.-.++....|+-|-..|-++- |+|...++++...-+-+.+.|+-|+.+
T Consensus 486 sei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqlde 553 (1118)
T KOG1029|consen 486 SEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDE 553 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677777777777777766665543 233444444444444444444444433
No 460
>PLN02320 seryl-tRNA synthetase
Probab=31.43 E-value=2.1e+02 Score=32.10 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008304 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (570)
Q Consensus 511 v~qLk~dmErLq~Ei~aQl~~LEs~~~Erda 541 (570)
..+|+.++..|.++|++...++..+..|+..
T Consensus 132 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 132 RQALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444444444444433
No 461
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=31.41 E-value=2.9e+02 Score=28.59 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008304 508 RSVVNQLKSEMEKLQEEI 525 (570)
Q Consensus 508 ~~~v~qLk~dmErLq~Ei 525 (570)
...+.+|++++++++++.
T Consensus 33 ~~~~~~l~~~~~~~~~~~ 50 (378)
T TIGR01554 33 ALEKEELETDVEKLKEEI 50 (378)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555444
No 462
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=31.07 E-value=2.6e+02 Score=29.92 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=15.6
Q ss_pred HhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008304 495 AENSSLTDSYNQQRSVVNQLKSEMEKLQE 523 (570)
Q Consensus 495 ~ENsALTdryNqQ~~~v~qLk~dmErLq~ 523 (570)
++-++++++||+..+.|.++..++.++-+
T Consensus 280 ~~ls~~~~~y~~~s~~V~~~t~~L~~Ise 308 (359)
T PF10498_consen 280 DELSEVQEKYKQASEGVSERTRELAEISE 308 (359)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34445556666655555555555554443
No 463
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.04 E-value=6.4e+02 Score=26.42 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=24.9
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 449 NQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLE 484 (570)
Q Consensus 449 ~~~~F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLe 484 (570)
..+.|.-..+-.|..+..|.--|+|+-=-.|--.|.
T Consensus 106 ~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~ 141 (267)
T PF10234_consen 106 SLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLG 141 (267)
T ss_pred chhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677778888888888888888875444444443
No 464
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.04 E-value=1.1e+02 Score=34.23 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008304 508 RSVVNQLKSEMEKLQEEI 525 (570)
Q Consensus 508 ~~~v~qLk~dmErLq~Ei 525 (570)
...|++|+.++++|+.++
T Consensus 103 e~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455666666666554
No 465
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=30.96 E-value=5.3e+02 Score=28.63 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008304 487 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 523 (570)
Q Consensus 487 ~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~ 523 (570)
++..+.|..|.+..+...-++...+.+|.+++.++++
T Consensus 109 ~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~ 145 (779)
T PRK11091 109 KDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREE 145 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556555555555555555555666666555443
No 466
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=30.82 E-value=3.2e+02 Score=29.51 Aligned_cols=15 Identities=20% Similarity=0.476 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHH
Q 008304 461 DFAALEQHIEDLTQE 475 (570)
Q Consensus 461 dFAaLqQhIeDLT~E 475 (570)
=++.|+++|.|.++.
T Consensus 84 ~~~~l~~~v~d~~rr 98 (319)
T KOG0796|consen 84 ALEILERFVADVDRR 98 (319)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467789999999876
No 467
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.81 E-value=6.1e+02 Score=32.32 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=30.1
Q ss_pred HHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhc
Q 008304 530 VELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRS 569 (570)
Q Consensus 530 ~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~lq 569 (570)
--|+.+.+|-.+|.--++.|.+|..-|..-|-.|--|+++
T Consensus 1598 ~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1598 QLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466777788888888888888888888777777666654
No 468
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=30.79 E-value=8.1e+02 Score=28.57 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=26.0
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q 008304 475 EKFALQRS---LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519 (570)
Q Consensus 475 EKfaLqRa---Leks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmE 519 (570)
||..|.+- ++..+..++.|...-+.+..+.+.+..+|..|+....
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~ 258 (670)
T KOG0239|consen 211 ERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELK 258 (670)
T ss_pred HHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555553 3356666677777777666665655555555443333
No 469
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=30.75 E-value=1.4e+02 Score=25.35 Aligned_cols=38 Identities=34% Similarity=0.443 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAEN 497 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~EN 497 (570)
+.|..|..-=++..+|+--|.+-++.++++++.|..||
T Consensus 31 er~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~EN 68 (68)
T PF11577_consen 31 ERFEELLAWQEKQKEEREFLERKFQEARELVERLKEEN 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34555555556666677777777777777777776665
No 470
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=30.75 E-value=8.8e+02 Score=29.33 Aligned_cols=96 Identities=27% Similarity=0.346 Sum_probs=53.6
Q ss_pred chhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhH----HHHHHHHhHHHHHHHHHHHHHHHHH-HHHHH
Q 008304 458 HNEDFAALEQHIEDLTQEKFA---LQRSLEASRALSESLAAENSS----LTDSYNQQRSVVNQLKSEMEKLQEE-IKVQL 529 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~EKfa---LqRaLeks~~laEsLA~ENsA----LTdryNqQ~~~v~qLk~dmErLq~E-i~aQl 529 (570)
+++-+++|+..=|.|..+-++ ..+-|...-+-+|+|...|-. |..--|....++ .-|++||++++| |.-..
T Consensus 451 kdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il-~~Kee~Ek~~~E~I~k~~ 529 (961)
T KOG4673|consen 451 KDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSIL-RDKEETEKLLQETIEKHQ 529 (961)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence 678899999888888877664 344555555555655554432 222233333222 235566666555 44445
Q ss_pred HHhhhhHHHHHHHHhhhhhHHHHHH
Q 008304 530 VELESFRNEYANVRLECNAADERAK 554 (570)
Q Consensus 530 ~~LEs~~~ErdaArle~~aA~ERak 554 (570)
++++..+.+|.+.|..+.+-.+|++
T Consensus 530 ae~~rq~~~~~~sr~~~~~le~~~~ 554 (961)
T KOG4673|consen 530 AELTRQKDYYSNSRALAAALEAQAL 554 (961)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6666666666665544444444433
No 471
>PRK04406 hypothetical protein; Provisional
Probab=30.65 E-value=3.4e+02 Score=23.17 Aligned_cols=50 Identities=30% Similarity=0.500 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~a 527 (570)
.|++-|+|| ++|+++|- .+.+.| |..++ +|..++..|++.|..|.+.++.
T Consensus 8 ~le~Ri~~L-E~~lAfQE------~tIe~L---N~~v~----~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDL-ECQLAFQE------QTIEEL---NDALS----QQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHH-HHHHHHHH------HHHHHH---HHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777 55666653 334433 44444 3556667777777777655443
No 472
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=30.65 E-value=3e+02 Score=26.53 Aligned_cols=31 Identities=19% Similarity=0.138 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRAL 489 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~l 489 (570)
..+...++.-++.+..+.-.+++.+++.++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L 93 (322)
T TIGR01730 63 QLALQAALAQLAAAEAQLELAQRSFERAERL 93 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433444444444443
No 473
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.57 E-value=3.2e+02 Score=31.63 Aligned_cols=84 Identities=24% Similarity=0.327 Sum_probs=51.9
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008304 450 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 450 ~~~F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl 529 (570)
.+-|+-....||=.|++.||-||-- | ||-+.+ ++.-.|.+.---..-+.-+-+-.+.+|+.|.-+||.-+.+-+
T Consensus 21 cka~h~ed~rddsea~e~~i~dle~-K--LQia~e---eigaalEEqSggal~rmPRaakd~~~Lq~Da~~Lq~kma~il 94 (828)
T KOG4182|consen 21 CKAFHEEDGRDDSEAAEAFIRDLEA-K--LQIAIE---EIGAALEEQSGGALARMPRAAKDSAALQADAHRLQEKMAAIL 94 (828)
T ss_pred hhhcccccCcccHHHHHHHHHHHHH-H--HHHHHH---HHhHHHHHhccchHhhCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4456666678899999999999853 3 333332 222222222222233344445567788888888888888877
Q ss_pred HHhhhhHHHH
Q 008304 530 VELESFRNEY 539 (570)
Q Consensus 530 ~~LEs~~~Er 539 (570)
.+|.+...|-
T Consensus 95 ~el~~aeges 104 (828)
T KOG4182|consen 95 LELAAAEGES 104 (828)
T ss_pred HHHHHHhCCh
Confidence 7777766543
No 474
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=30.47 E-value=3e+02 Score=29.65 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhhhhhhh
Q 008304 549 ADERAKILASEVIGLEE 565 (570)
Q Consensus 549 A~ERak~LAaEVV~LEE 565 (570)
..++++.|..++-.||+
T Consensus 74 l~~~~~~l~~~~~~~~~ 90 (418)
T TIGR00414 74 IKKELKELKEELTELSA 90 (418)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 475
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=30.41 E-value=3.1e+02 Score=28.41 Aligned_cols=69 Identities=13% Similarity=0.229 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHh-HHHHHHHHHHHHH----HHHHHH---HH-----HHHhhhhHHHHHHHHhhhhhHHHHH
Q 008304 487 RALSESLAAENSSLTDSYNQQ-RSVVNQLKSEMEK----LQEEIK---VQ-----LVELESFRNEYANVRLECNAADERA 553 (570)
Q Consensus 487 ~~laEsLA~ENsALTdryNqQ-~~~v~qLk~dmEr----Lq~Ei~---aQ-----l~~LEs~~~ErdaArle~~aA~ERa 553 (570)
..=+|.||.+.-.+.+.+|.. .+.+.-|..+.++ +..+++ .. ..+|+-++.+|+.+-.....|.++-
T Consensus 75 l~QTE~isk~~~~~Aeeln~~~~~kLs~L~~~k~~~rK~~~~~~q~i~~e~~~~t~~eveK~Kk~Y~~~c~~~e~AR~K~ 154 (237)
T cd07685 75 VSQTETLSQVLRKHAEDLNAGPLSKLSLLIRDKQQLRKTFSEQWQLLKQEYTKTTQQDIEKLKSQYRSLAKDSAQAKRKY 154 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677888888888888877 7788888877777 332222 11 1367778888888777777777665
Q ss_pred HH
Q 008304 554 KI 555 (570)
Q Consensus 554 k~ 555 (570)
+-
T Consensus 155 ek 156 (237)
T cd07685 155 QE 156 (237)
T ss_pred Hh
Confidence 44
No 476
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=30.36 E-value=1.7e+02 Score=29.73 Aligned_cols=74 Identities=27% Similarity=0.274 Sum_probs=51.5
Q ss_pred HHHHHHhhhHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 008304 490 SESLAAENSSLTDSYNQQRSVVNQLK--SEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 563 (570)
Q Consensus 490 aEsLA~ENsALTdryNqQ~~~v~qLk--~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~L 563 (570)
...|..--..|-.+.-.-+..++.++ +.+|+|+..|..+...|+..+.+...|+..+..|..+--..=-||-.|
T Consensus 4 ~~~~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~L 79 (207)
T PF05546_consen 4 SKKLSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNEL 79 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555566666667777776 578888888888888888888888888888887776655555566554
No 477
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=30.35 E-value=7.7e+02 Score=28.30 Aligned_cols=92 Identities=24% Similarity=0.360 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH--------------HHH-------HHHHHHHHHHHHHhhhHHH-------HHHHH-----
Q 008304 460 EDFAALEQHIEDLTQEKFAL--------------QRS-------LEASRALSESLAAENSSLT-------DSYNQ----- 506 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaL--------------qRa-------Leks~~laEsLA~ENsALT-------dryNq----- 506 (570)
|-+--|...||+|-++|+-+ |-+ |+.++.=-++|--|-..+. +||=.
T Consensus 362 DiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqK 441 (527)
T PF15066_consen 362 DIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQK 441 (527)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 44678999999999988753 222 2333333333333333332 33321
Q ss_pred ---------hHHHHHHHHHHHHHHHHHH----HHHHHHhhhhHHHHHHHHhhhhhHHH
Q 008304 507 ---------QRSVVNQLKSEMEKLQEEI----KVQLVELESFRNEYANVRLECNAADE 551 (570)
Q Consensus 507 ---------Q~~~v~qLk~dmErLq~Ei----~aQl~~LEs~~~ErdaArle~~aA~E 551 (570)
-...+++-.++|||||+.. +|-..+|+-++.|...-.+++-.-.|
T Consensus 442 nksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqe 499 (527)
T PF15066_consen 442 NKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQE 499 (527)
T ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223444456777777654 34457777777777766666654443
No 478
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=30.29 E-value=5.7e+02 Score=28.27 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=31.8
Q ss_pred HHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHH
Q 008304 490 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD 550 (570)
Q Consensus 490 aEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ 550 (570)
...|-.++++|+..++.-- -++..++-+++++.++...+-.=..++-+++.+|.+=.
T Consensus 119 ~~~l~~~~Ealsk~~~~~~----k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~l~a~r 175 (377)
T KOG2896|consen 119 ESNLQRQIEALSKKRAHLE----KTKQKLEDKRQQFNASQVKLQKQLKSLIELRNELVAKR 175 (377)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3456667777777755433 34444444555555555555555555555666665543
No 479
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=30.13 E-value=4e+02 Score=23.79 Aligned_cols=36 Identities=25% Similarity=0.150 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL 500 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsAL 500 (570)
+|=-||=|---+-.|...+...++-.+.+..+++.+
T Consensus 64 aQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l 99 (118)
T PF13815_consen 64 AQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKL 99 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344333333333333333333333333333333
No 480
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=30.12 E-value=4.6e+02 Score=25.97 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=4.6
Q ss_pred hhhHHHHHHHH
Q 008304 533 ESFRNEYANVR 543 (570)
Q Consensus 533 Es~~~ErdaAr 543 (570)
+.++.|.++.+
T Consensus 96 ~~l~~en~~L~ 106 (276)
T PRK13922 96 EQLEAENARLR 106 (276)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 481
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=30.08 E-value=2.6e+02 Score=21.65 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=42.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008304 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 532 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~L 532 (570)
.-++...+.+.++.+-.|-......++.-.+.++.|...+..-+.... ..+.+|....+.|...+......|
T Consensus 32 ~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~---~~~~~l~~~w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 32 DLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQ---EKLEELNQRWEALCELVEERRQKL 103 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHC
Confidence 345666666777777777777777777777888888665544433332 233444444555554444444444
No 482
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.02 E-value=4e+02 Score=32.33 Aligned_cols=83 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH----------HHHHHhhh
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK----------VQLVELES 534 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~----------aQl~~LEs 534 (570)
|+--+.++-.+...|.-.++.-+.....|--||+.|-..|-++-+...+|++++.-|+.++. .-+-+.+.
T Consensus 655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t 734 (970)
T KOG0946|consen 655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKT 734 (970)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccC
Q ss_pred hHHHHHHHHhhhh
Q 008304 535 FRNEYANVRLECN 547 (570)
Q Consensus 535 ~~~ErdaArle~~ 547 (570)
.-.|..+|+.+..
T Consensus 735 ~~eel~a~~~e~k 747 (970)
T KOG0946|consen 735 QNEELNAALSENK 747 (970)
T ss_pred ChHHHHHHHHHHH
No 483
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=29.85 E-value=6.2e+02 Score=25.92 Aligned_cols=27 Identities=7% Similarity=0.257 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008304 516 SEMEKLQEEIKVQLVELESFRNEYANV 542 (570)
Q Consensus 516 ~dmErLq~Ei~aQl~~LEs~~~ErdaA 542 (570)
.++++.+.+++.....++.+++++.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ 170 (370)
T PRK11578 144 QDLDTAATELAVKQAQIGTIDAQIKRN 170 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444334444444444433
No 484
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=29.76 E-value=5.8e+02 Score=28.91 Aligned_cols=92 Identities=35% Similarity=0.492 Sum_probs=0.0
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhHHHHHHHHhHHHHHH-------HHHHHHHHHHHH
Q 008304 462 FAALE----QHIEDLTQEKFALQRSLEASRA-----LSESLAAENSSLTDSYNQQRSVVNQ-------LKSEMEKLQEEI 525 (570)
Q Consensus 462 FAaLq----QhIeDLT~EKfaLqRaLeks~~-----laEsLA~ENsALTdryNqQ~~~v~q-------Lk~dmErLq~Ei 525 (570)
||++| |.||||-+.- ||.|++-|+ |||.-|+--+||----|+-...|+- +..+++-|+++
T Consensus 343 fAaMEetHQkkiEdLQRqH---qRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQ- 418 (593)
T KOG4807|consen 343 FAAMEETHQKKIEDLQRQH---QRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQ- 418 (593)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHH-
Q ss_pred HHHHHHhhhhHHHHH----HHHhhhhhHHHHHHHHHHh
Q 008304 526 KVQLVELESFRNEYA----NVRLECNAADERAKILASE 559 (570)
Q Consensus 526 ~aQl~~LEs~~~Erd----aArle~~aA~ERak~LAaE 559 (570)
++.+|++++.|.. .+-+-|-+.--=++.|-+|
T Consensus 419 --yleelqsvqRELeVLSEQYSQKCLEnahLaqalEae 454 (593)
T KOG4807|consen 419 --YLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAE 454 (593)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=29.74 E-value=1.1e+03 Score=28.54 Aligned_cols=107 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHH---hhhHHHHHHHHhHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRAL----------------------------SESLAA---ENSSLTDSYNQQRSVV 511 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~l----------------------------aEsLA~---ENsALTdryNqQ~~~v 511 (570)
..+++.|+++..+.-.+...+...+.- .+.+.. .-..+.....+....+
T Consensus 619 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1047)
T PRK10246 619 HELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEASWLATRQQEAQSWQQRQNELTALQNRIQQLTPLL 698 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhc
Q 008304 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRS 569 (570)
Q Consensus 512 ~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~lq 569 (570)
.++....++++.+.+.....+...+.+++++...+..+.++...+..+.-.+++....
T Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 756 (1047)
T PRK10246 699 ETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDT 756 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.69 E-value=4.4e+02 Score=28.22 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=0.0
Q ss_pred cchhhHHHHH------HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008304 457 KHNEDFAALE------QHIEDL------TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (570)
Q Consensus 457 ~~~ddFAaLq------QhIeDL------T~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~E 524 (570)
+..+||.-|. +.|||| -..--.....|++=++....+-.+|-+...+-.+.-...-++..++.+.+++
T Consensus 84 k~e~dF~~l~~yNdYLE~vEdii~nL~~~~d~~~te~~l~~y~~~n~~~I~~n~~~~~~e~~~~~~~~~~E~~~~~~rr~ 163 (309)
T TIGR00570 84 KREEDFPSLREYNDYLEEVEDIVYNLTNNIDLENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRL 163 (309)
T ss_pred cchhccCCHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 008304 525 IKVQLVELESFRNEYANVRLECNAADERAKILASEVI 561 (570)
Q Consensus 525 i~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV 561 (570)
+..|+-+.| +.++...+++.-+--+.+..-|+++|
T Consensus 164 ~~~~~e~ee--~~~~~~~~~~~ld~L~~s~~~~~~~i 198 (309)
T TIGR00570 164 LLQKEEEEQ--QMNKRKNKQALLDELETSTLPAAELI 198 (309)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCHHHHH
No 487
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=29.68 E-value=2.2e+02 Score=27.90 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 008304 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLE 564 (570)
Q Consensus 510 ~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LE 564 (570)
....++.+++.|+.+++...-.+-.+.+|++|.|.+...-.|-++..|.|=+-.+
T Consensus 37 ~~~~~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~d 91 (193)
T COG0576 37 ELEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKD 91 (193)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=29.57 E-value=18 Score=42.02 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
++.-|+..++..++.+..+++.+.+-+.....|-.+-+...+.-.+....+..+.+.+..|+.|+.--..+++..---|.
T Consensus 554 ~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk 633 (859)
T PF01576_consen 554 DLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARK 633 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhcC
Q 008304 541 NVRLECNAADERAKILASEVIGLEEKVRSL 570 (570)
Q Consensus 541 aArle~~aA~ERak~LAaEVV~LEEk~lqL 570 (570)
.|..+..++.+|.-.|..-.-.|.+.+++|
T Consensus 634 ~aE~el~e~~~~~~~l~~~~~~l~~~kr~l 663 (859)
T PF01576_consen 634 QAESELDELQERLNELTSQNSSLSEEKRKL 663 (859)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
No 489
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=29.45 E-value=4.2e+02 Score=23.74 Aligned_cols=84 Identities=12% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHH-----HHHHHHHHHHhhhhHHHHHHHHhhhhhHHHH
Q 008304 478 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL-----QEEIKVQLVELESFRNEYANVRLECNAADER 552 (570)
Q Consensus 478 aLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErL-----q~Ei~aQl~~LEs~~~ErdaArle~~aA~ER 552 (570)
.+.+.....+++.+.|-.+..++....+.....+..+..+++.. ..+++....++.....|+...+.......+.
T Consensus 26 ~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~ 105 (158)
T PF03938_consen 26 KVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQ 105 (158)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhh
Q 008304 553 AKILASEVI 561 (570)
Q Consensus 553 ak~LAaEVV 561 (570)
.+.-....|
T Consensus 106 ~~~~~~~~i 114 (158)
T PF03938_consen 106 EEQELLQPI 114 (158)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 490
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=29.35 E-value=92 Score=34.72 Aligned_cols=41 Identities=32% Similarity=0.475 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008304 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 523 (570)
Q Consensus 483 Leks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~ 523 (570)
+...++-.++|++.|..|+..-++-+.++..|++++++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 491
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=28.96 E-value=3.8e+02 Score=23.10 Aligned_cols=107 Identities=23% Similarity=0.370 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHH--------HHHHHHHHHHHHHHHHH------
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS--------VVNQLKSEMEKLQEEIK------ 526 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~--------~v~qLk~dmErLq~Ei~------ 526 (570)
+|..|+..|+.|.+.=-+|..++.......+.|++.-..|...+-.... .++...++++.+..+..
T Consensus 1 ~~~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 80 (194)
T cd07307 1 KLDELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENK 80 (194)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------HHHHHhhhhHHHHHHHHhhhhhHHHHHHHH------HHhhhhhhhhh
Q 008304 527 ----------VQLVELESFRNEYANVRLECNAADERAKIL------ASEVIGLEEKV 567 (570)
Q Consensus 527 ----------aQl~~LEs~~~ErdaArle~~aA~ERak~L------AaEVV~LEEk~ 567 (570)
...-.+...+-.|+.+++++.++.++...+ ..++-.+|+++
T Consensus 81 v~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~ 137 (194)
T cd07307 81 VIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEEL 137 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHH
No 492
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=28.95 E-value=4e+02 Score=31.45 Aligned_cols=71 Identities=15% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008304 467 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 537 (570)
Q Consensus 467 QhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ 537 (570)
.||+|+-+-|-+.--.|-..+.--|.|-.|-+.+..+--+....+.+-|-|+++|+.+|..-...++.+.+
T Consensus 79 r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 79 RILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
No 493
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=28.92 E-value=5.9e+02 Score=25.35 Aligned_cols=94 Identities=12% Similarity=0.084 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH---------
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSL---EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK--------- 526 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaL---eks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~--------- 526 (570)
+...+.+++-|+.+..+--.++..| ++.-+-.+.|..++-.=...|.+....+.+++.+++.++.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 168 (327)
T TIGR02971 89 ARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASRSEQIDGARAA 168 (327)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -------HHHHHhhhhHHHHHHHHhhhhhHHHH
Q 008304 527 -------VQLVELESFRNEYANVRLECNAADER 552 (570)
Q Consensus 527 -------aQl~~LEs~~~ErdaArle~~aA~ER 552 (570)
.....++....++..++.....|..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 201 (327)
T TIGR02971 169 LASLAEEVRETDVDLAQAEVKSALEAVQQAEAL 201 (327)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PRK10865 protein disaggregation chaperone; Provisional
Probab=28.87 E-value=9.6e+02 Score=28.35 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008304 457 KHNEDFAALEQHIEDLTQEKFALQRS--------LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528 (570)
Q Consensus 457 ~~~ddFAaLqQhIeDLT~EKfaLqRa--------Leks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQ 528 (570)
.+.+....|+..|..|..|+-.+.+. +++-++-.+.+..|-..|..++-.+...+++.....+.+. +++..
T Consensus 407 ~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele-~l~~k 485 (857)
T PRK10865 407 SKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELE-QAKIA 485 (857)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHH
Q ss_pred HHHhhhhHHHHHHHHhhhhhHHHHHHHHHH
Q 008304 529 LVELESFRNEYANVRLECNAADERAKILAS 558 (570)
Q Consensus 529 l~~LEs~~~ErdaArle~~aA~ERak~LAa 558 (570)
+...+....-..++.+++....+--+.|.+
T Consensus 486 ie~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (857)
T PRK10865 486 IEQARRVGDLARMSELQYGKIPELEKQLAA 515 (857)
T ss_pred HHHHHhhhhhhhHHHhhhhhhHHHHHHHHH
No 495
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=28.81 E-value=3.9e+02 Score=29.69 Aligned_cols=84 Identities=13% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHhhhhH-------------------------
Q 008304 484 EASRALSESLAAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFR------------------------- 536 (570)
Q Consensus 484 eks~~laEsLA~ENsALTdryNqQ--~~~v~qLk~dmErLq~Ei~aQl~~LEs~~------------------------- 536 (570)
+-++++++.|-.+=|.+...-|++ ...|.-.+.++++-++.++.-+.+|-.|+
T Consensus 215 edA~~ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~q 294 (434)
T PRK15178 215 KQAEFFAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQ 294 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHH
Q ss_pred -----HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 537 -----NEYANVRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 537 -----~ErdaArle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
.|+++.+.-...-.-+...|-.+|-.||.++
T Consensus 295 La~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QI 330 (434)
T PRK15178 295 LAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQI 330 (434)
T ss_pred HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHH
No 496
>PRK14149 heat shock protein GrpE; Provisional
Probab=28.69 E-value=1.9e+02 Score=28.72 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 008304 515 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLE 564 (570)
Q Consensus 515 k~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LE 564 (570)
++.++.|+.+++...-.+--+.+|.+|+|.+...-.|+++..|.+-+..+
T Consensus 42 ~~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~ 91 (191)
T PRK14149 42 GEIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALD 91 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=28.66 E-value=5.5e+02 Score=24.90 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Er 539 (570)
+++.++-+-|.++=..+..++..++.+..-.+.+-+.-+.|...-.-+...|.+++.+|+.++ ...
T Consensus 94 ~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e--------------~~~ 159 (216)
T cd07627 94 DEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAE--------------RRA 159 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH--------------HHH
Q ss_pred HHHHhhhhhHHHHHHH
Q 008304 540 ANVRLECNAADERAKI 555 (570)
Q Consensus 540 daArle~~aA~ERak~ 555 (570)
..|+.++....++.|.
T Consensus 160 ~~a~~~~e~is~~~k~ 175 (216)
T cd07627 160 SELKKEFEEVSELIKS 175 (216)
T ss_pred HHHHHHHHHHHHHHHH
No 498
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=28.36 E-value=5.5e+02 Score=24.79 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhH-------------HHHHHHHHHHHHHHHHHHHH
Q 008304 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR-------------SVVNQLKSEMEKLQEEIKVQ 528 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~-------------~~v~qLk~dmErLq~Ei~aQ 528 (570)
+.+|+-+.|=--.++-.+...|.+.+.-.++.+.---.|++.+|+-. +.+...+.-|-.|+..|+-|
T Consensus 4 ~~~L~~l~dl~~k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~~nyq~fI~~Le~~I~q~ 83 (148)
T COG2882 4 HFALQKLLDLAKKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQWQNYQQFISQLEVAIDQQ 83 (148)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304 529 LVELESFRNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 529 l~~LEs~~~ErdaArle~~aA~ERak~L 556 (570)
...+..++...+.++.-..+..-|-+++
T Consensus 84 ~~~~~~~~~~ve~~r~~w~ek~~~~k~~ 111 (148)
T COG2882 84 QSQLSKLRKQVEQKREIWQEKQIELKAL 111 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=28.35 E-value=79 Score=35.96 Aligned_cols=95 Identities=16% Similarity=0.238 Sum_probs=0.0
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 451 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 530 (570)
Q Consensus 451 ~~F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~ 530 (570)
|+---++.++|-..=|..||++|. |-+.|.|-.-..=+.|..+||+-..++++|.+.|+..-
T Consensus 355 qN~qG~G~AAD~kSTQ~aid~it~----------kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~-------- 416 (550)
T PF00509_consen 355 QNAQGSGYAADLKSTQKAIDQITK----------KVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKI-------- 416 (550)
T ss_dssp EETTEEEEEEEHHHHHHHHHHHHH----------HHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHH--------
T ss_pred cCccceeccccccchHHHHHHHHH----------HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhccc--------
Q ss_pred HhhhhHHHHHHHHhhhhhHHHHHHHH---HHhhhhhhhhhhc
Q 008304 531 ELESFRNEYANVRLECNAADERAKIL---ASEVIGLEEKVRS 569 (570)
Q Consensus 531 ~LEs~~~ErdaArle~~aA~ERak~L---AaEVV~LEEk~lq 569 (570)
.+.=.++.|.--+.|--+.| =+||-.|+||+++
T Consensus 417 ------~d~wsynaELlVlleN~~tld~~Ds~~~~L~ekvk~ 452 (550)
T PF00509_consen 417 ------ADVWSYNAELLVLLENQRTLDLHDSNVNNLYEKVKR 452 (550)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------hhhhcccHHHHHHhccccchhhhHHHHHHHHHHHHH
No 500
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=28.23 E-value=19 Score=41.73 Aligned_cols=111 Identities=25% Similarity=0.272 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Er 539 (570)
..+..++.-+..|..|.-.+...++.+.+.-..+-.|...+.++.|.-......|-+...+|+.+|..-..+|+-...+.
T Consensus 602 ~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~ 681 (859)
T PF01576_consen 602 EQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEA 681 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhcC
Q 008304 540 ANVRLECNAADERAKILASEVIGLEEKVRSL 570 (570)
Q Consensus 540 daArle~~aA~ERak~LAaEVV~LEEk~lqL 570 (570)
.+|--.+..|...+-.|+.|+-.--+.+..|
T Consensus 682 ~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~l 712 (859)
T PF01576_consen 682 EAAEEKAKKAQAQAAQLAEELRQEQDHNQHL 712 (859)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Done!