Query 008304
Match_columns 570
No_of_seqs 22 out of 24
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 23:02:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 96.3 0.16 5.6E-06 43.9 15.3 58 465-522 25-82 (284)
2 3oja_B Anopheles plasmodium-re 95.5 0.28 9.5E-06 49.7 15.1 110 460-569 456-576 (597)
3 1i84_S Smooth muscle myosin he 95.1 0.045 1.5E-06 61.8 8.5 8 24-31 329-336 (1184)
4 3oja_B Anopheles plasmodium-re 94.8 0.2 6.9E-06 50.7 11.6 71 476-546 504-574 (597)
5 3oja_A Leucine-rich immune mol 94.0 0.63 2.2E-05 46.5 13.0 105 453-558 347-484 (487)
6 2dfs_A Myosin-5A; myosin-V, in 93.5 0.26 8.9E-06 56.0 10.3 57 509-568 984-1040(1080)
7 3na7_A HP0958; flagellar bioge 93.1 1.8 6.1E-05 41.0 13.8 86 460-545 46-133 (256)
8 3na7_A HP0958; flagellar bioge 92.9 2.5 8.4E-05 40.1 14.4 31 537-567 90-120 (256)
9 1i84_S Smooth muscle myosin he 92.0 0.79 2.7E-05 51.9 11.5 12 460-471 857-868 (1184)
10 3q8t_A Beclin-1; autophagy, AT 91.3 3.1 0.00011 35.2 11.8 73 463-535 21-93 (96)
11 3a7p_A Autophagy protein 16; c 91.2 1.6 5.3E-05 40.6 10.5 76 493-568 59-134 (152)
12 3ol1_A Vimentin; structural ge 91.1 4.1 0.00014 35.4 12.7 36 460-495 20-55 (119)
13 3u59_A Tropomyosin beta chain; 89.9 7.2 0.00025 32.8 12.7 70 480-549 15-84 (101)
14 3u1c_A Tropomyosin alpha-1 cha 89.2 6 0.0002 33.5 11.8 44 484-527 19-62 (101)
15 3u59_A Tropomyosin beta chain; 88.0 7.7 0.00026 32.6 11.6 85 484-568 5-96 (101)
16 3o0z_A RHO-associated protein 87.6 11 0.00039 35.3 13.5 102 459-560 5-106 (168)
17 3vkg_A Dynein heavy chain, cyt 86.8 5.5 0.00019 50.4 14.0 120 450-569 1888-2046(3245)
18 2efk_A CDC42-interacting prote 86.7 7.3 0.00025 36.1 11.8 84 466-549 115-198 (301)
19 3mq7_A Bone marrow stromal ant 86.0 7.5 0.00026 35.1 10.9 70 471-540 33-102 (121)
20 2dfs_A Myosin-5A; myosin-V, in 85.8 12 0.00042 42.7 15.2 47 484-530 980-1026(1080)
21 3hnw_A Uncharacterized protein 85.5 16 0.00055 32.7 12.9 68 492-566 65-132 (138)
22 3hnw_A Uncharacterized protein 85.5 5 0.00017 36.0 9.6 62 509-570 68-129 (138)
23 2no2_A HIP-I, huntingtin-inter 84.9 18 0.00063 31.2 13.7 97 468-565 3-103 (107)
24 2jee_A YIIU; FTSZ, septum, coi 84.7 12 0.00043 31.5 11.0 71 458-535 4-74 (81)
25 3vkg_A Dynein heavy chain, cyt 84.6 10 0.00034 48.3 14.8 101 467-567 1987-2093(3245)
26 1jcd_A Major outer membrane li 84.6 2.7 9.1E-05 32.9 6.5 44 503-553 5-48 (52)
27 2efl_A Formin-binding protein 84.1 12 0.0004 34.6 11.8 68 482-549 124-205 (305)
28 3swk_A Vimentin; cytoskeleton, 82.9 15 0.00052 30.5 10.8 32 462-493 2-33 (86)
29 2i1j_A Moesin; FERM, coiled-co 82.6 0.74 2.5E-05 48.9 3.5 32 465-496 340-371 (575)
30 2jee_A YIIU; FTSZ, septum, coi 82.6 7 0.00024 33.0 8.7 60 460-519 20-79 (81)
31 3ajw_A Flagellar FLIJ protein; 82.3 22 0.00074 30.1 14.2 94 464-557 9-115 (150)
32 4emc_A Monopolin complex subun 81.3 3.7 0.00013 39.4 7.3 57 470-526 2-58 (190)
33 3ol1_A Vimentin; structural ge 81.1 27 0.00091 30.3 12.5 79 485-563 24-102 (119)
34 3u1c_A Tropomyosin alpha-1 cha 79.8 27 0.00092 29.5 14.4 86 483-568 4-96 (101)
35 3iox_A AGI/II, PA; alpha helix 77.6 27 0.00092 37.6 13.2 53 476-531 29-81 (497)
36 1deq_A Fibrinogen (alpha chain 77.2 17 0.00058 38.0 11.3 94 463-557 63-175 (390)
37 1jcd_A Major outer membrane li 76.6 6.8 0.00023 30.6 6.3 44 490-545 6-49 (52)
38 3abh_A Pacsin2, protein kinase 76.5 4.1 0.00014 38.5 6.1 89 464-552 140-228 (312)
39 3bas_A Myosin heavy chain, str 75.7 10 0.00035 31.5 7.6 33 537-569 49-81 (89)
40 2efk_A CDC42-interacting prote 75.7 50 0.0017 30.5 13.1 75 478-552 66-152 (301)
41 1wt6_A Myotonin-protein kinase 75.1 6.6 0.00023 33.4 6.3 54 516-569 14-70 (81)
42 2xdj_A Uncharacterized protein 74.3 17 0.00059 30.4 8.6 53 493-545 25-77 (83)
43 2x3v_A Syndapin I, protein kin 74.0 27 0.00093 33.2 11.1 87 463-549 130-216 (337)
44 3htk_A Structural maintenance 73.8 21 0.00072 26.9 8.3 51 476-526 7-57 (60)
45 3aco_A Pacsin2, protein kinase 72.5 7.1 0.00024 37.8 6.8 89 464-552 140-228 (350)
46 3m91_A Proteasome-associated A 72.3 9.5 0.00032 29.7 6.1 35 487-521 15-49 (51)
47 3i00_A HIP-I, huntingtin-inter 71.7 33 0.0011 30.4 10.2 88 461-555 16-103 (120)
48 3mq9_A Bone marrow stromal ant 71.2 31 0.0011 34.2 11.2 62 479-540 402-467 (471)
49 2efl_A Formin-binding protein 70.6 27 0.00093 32.1 10.0 48 505-552 112-159 (305)
50 3oja_A Leucine-rich immune mol 69.7 68 0.0023 32.0 13.3 48 496-543 429-476 (487)
51 3m9b_A Proteasome-associated A 69.7 4.8 0.00017 39.8 5.0 36 487-522 60-95 (251)
52 1m1j_B Fibrinogen beta chain; 69.2 94 0.0032 32.9 14.8 59 507-567 140-198 (464)
53 1t2k_D Cyclic-AMP-dependent tr 68.5 35 0.0012 26.2 8.6 51 475-525 9-59 (61)
54 2ke4_A CDC42-interacting prote 68.2 35 0.0012 29.2 9.3 83 451-535 6-88 (98)
55 3abh_A Pacsin2, protein kinase 67.4 54 0.0018 30.9 11.4 75 478-552 85-179 (312)
56 4i0x_B ESAT-6-like protein MAB 66.8 50 0.0017 26.8 10.9 52 459-510 10-64 (103)
57 1x79_B RAB GTPase binding effe 66.6 70 0.0024 28.4 11.3 46 489-534 39-84 (112)
58 3haj_A Human pacsin2 F-BAR; pa 66.5 18 0.0006 37.1 8.5 87 464-550 133-219 (486)
59 1go4_E MAD1 (mitotic arrest de 65.8 16 0.00054 31.9 6.8 40 502-541 12-53 (100)
60 4fi5_A Nucleoprotein; structur 65.3 45 0.0015 29.8 9.7 68 465-532 24-92 (113)
61 1ic2_A Tropomyosin alpha chain 65.1 48 0.0016 26.8 9.2 53 482-534 14-66 (81)
62 2fxo_A Myosin heavy chain, car 64.9 46 0.0016 28.9 9.7 35 480-514 26-60 (129)
63 1jnm_A Proto-oncogene C-JUN; B 64.9 14 0.00047 28.7 5.7 51 476-526 10-60 (62)
64 2wt7_A Proto-oncogene protein 64.6 32 0.0011 26.8 7.8 52 475-526 10-61 (63)
65 3q8t_A Beclin-1; autophagy, AT 63.6 67 0.0023 27.1 13.2 81 459-546 3-83 (96)
66 3q0x_A Centriole protein; cent 63.5 14 0.00048 35.9 6.8 40 498-537 167-206 (228)
67 3zx6_A HAMP, methyl-accepting 63.3 1.1E+02 0.0039 29.7 15.3 108 458-565 32-143 (341)
68 2k48_A Nucleoprotein; viral pr 63.0 72 0.0025 28.3 10.5 67 463-529 35-102 (107)
69 2dnx_A Syntaxin-12; snare, HAB 62.6 78 0.0027 27.5 11.1 94 457-553 7-114 (130)
70 1ik9_A DNA repair protein XRCC 61.7 78 0.0027 30.1 11.4 36 490-525 141-176 (213)
71 1m1j_C Fibrinogen gamma chain; 61.4 83 0.0028 32.7 12.4 97 459-568 37-136 (409)
72 2ic9_A Nucleocapsid protein; h 61.1 76 0.0026 27.7 10.1 67 464-530 6-73 (96)
73 3i00_A HIP-I, huntingtin-inter 60.9 60 0.0021 28.7 9.8 68 479-549 20-87 (120)
74 2v71_A Nuclear distribution pr 60.8 1.2E+02 0.004 28.9 14.9 101 461-561 25-154 (189)
75 4h22_A Leucine-rich repeat fli 60.4 44 0.0015 29.4 8.6 73 472-544 21-96 (103)
76 2v66_B Nuclear distribution pr 60.2 91 0.0031 27.5 10.9 74 488-561 10-101 (111)
77 3ghg_A Fibrinogen alpha chain; 60.1 50 0.0017 36.0 10.7 28 466-493 63-90 (562)
78 2yy0_A C-MYC-binding protein; 58.9 6.2 0.00021 30.6 2.8 31 490-520 21-51 (53)
79 4etp_A Kinesin-like protein KA 58.5 15 0.00051 37.5 6.2 59 509-567 3-61 (403)
80 3tnu_B Keratin, type II cytosk 58.4 91 0.0031 26.9 10.5 34 510-543 83-123 (129)
81 1ic2_A Tropomyosin alpha chain 58.2 72 0.0025 25.7 10.3 57 493-549 11-67 (81)
82 2zqm_A Prefoldin beta subunit 57.8 77 0.0026 25.9 11.7 37 459-495 12-48 (117)
83 3haj_A Human pacsin2 F-BAR; pa 57.2 1.7E+02 0.0059 29.8 15.3 78 478-555 78-175 (486)
84 2p22_C Protein SRN2; endosome, 57.1 87 0.003 29.4 10.7 69 491-559 75-150 (192)
85 4ani_A Protein GRPE; chaperone 57.0 28 0.00094 33.5 7.4 32 491-522 69-100 (213)
86 3fpp_A Macrolide-specific effl 56.9 48 0.0016 31.2 9.0 22 465-486 67-88 (341)
87 1gd2_E Transcription factor PA 56.6 16 0.00056 29.7 5.0 7 466-472 28-34 (70)
88 1f5n_A Interferon-induced guan 56.3 1.8E+02 0.0062 31.2 14.3 84 481-566 487-582 (592)
89 3tnu_A Keratin, type I cytoske 56.3 78 0.0027 27.4 9.6 34 510-543 85-125 (131)
90 1go4_E MAD1 (mitotic arrest de 55.6 36 0.0012 29.7 7.2 28 459-486 11-38 (100)
91 4ioe_A Secreted protein ESXB; 55.1 70 0.0024 24.6 11.0 65 460-524 9-78 (93)
92 1ez3_A Syntaxin-1A; three heli 54.5 91 0.0031 25.8 10.1 30 491-520 50-79 (127)
93 2wt7_B Transcription factor MA 54.5 23 0.00078 30.3 5.8 40 509-548 48-87 (90)
94 3hhm_B NISH2 P85alpha; PI3KCA, 54.4 1.8E+02 0.0061 29.7 13.2 40 497-536 200-239 (373)
95 2f23_A Anti-cleavage anti-GREA 54.3 24 0.00081 31.4 6.2 60 459-524 9-68 (156)
96 3jsv_C NF-kappa-B essential mo 54.3 64 0.0022 28.0 8.5 10 465-474 21-30 (94)
97 3a7p_A Autophagy protein 16; c 54.0 83 0.0028 29.3 9.8 59 463-521 64-129 (152)
98 3mtu_A Tropomyosin alpha-1 cha 53.6 44 0.0015 27.1 7.1 60 509-568 2-61 (75)
99 1m1j_B Fibrinogen beta chain; 53.3 1.3E+02 0.0043 32.0 12.3 12 556-567 180-191 (464)
100 3ghg_A Fibrinogen alpha chain; 53.0 1.1E+02 0.0039 33.4 12.0 49 499-547 114-162 (562)
101 2dq0_A Seryl-tRNA synthetase; 52.3 31 0.0011 35.8 7.5 31 499-529 73-103 (455)
102 4dk0_A Putative MACA; alpha-ha 51.9 34 0.0012 32.5 7.2 10 515-524 121-130 (369)
103 2v0o_A FCHO2, FCH domain only 51.7 66 0.0023 29.3 8.8 56 487-542 79-148 (276)
104 1joc_A EEA1, early endosomal a 50.8 52 0.0018 28.6 7.6 34 465-498 16-49 (125)
105 3fpp_A Macrolide-specific effl 50.8 88 0.003 29.4 9.7 14 459-472 68-81 (341)
106 3i2w_A Syndapin, LD46328P; EFC 50.6 11 0.00038 35.1 3.6 89 463-551 117-205 (290)
107 3qne_A Seryl-tRNA synthetase, 50.5 38 0.0013 35.9 7.9 32 499-530 75-106 (485)
108 1wle_A Seryl-tRNA synthetase; 50.5 45 0.0015 35.2 8.5 30 511-540 118-147 (501)
109 3s9g_A Protein hexim1; cyclin 50.4 92 0.0032 27.5 9.0 54 470-530 33-86 (104)
110 3lay_A Zinc resistance-associa 50.3 40 0.0014 31.3 7.2 18 466-483 62-79 (175)
111 4dyl_A Tyrosine-protein kinase 50.3 1.9E+02 0.0065 29.0 12.6 91 462-552 100-200 (406)
112 2p4v_A Transcription elongatio 50.0 37 0.0013 30.5 6.8 60 459-524 8-68 (158)
113 2x3v_A Syndapin I, protein kin 50.0 1.7E+02 0.006 27.7 12.3 72 479-550 77-168 (337)
114 2v4h_A NF-kappa-B essential mo 49.5 1.4E+02 0.0049 26.5 11.0 16 521-536 74-89 (110)
115 2fxo_A Myosin heavy chain, car 49.3 1.3E+02 0.0045 26.0 12.8 62 487-548 51-115 (129)
116 3tnu_B Keratin, type II cytosk 49.3 1.3E+02 0.0044 26.0 12.6 57 481-540 50-106 (129)
117 3fav_B ESAT-6, 6 kDa early sec 49.0 86 0.0029 24.4 8.0 36 461-496 6-41 (94)
118 3fav_A ESAT-6-like protein ESX 48.5 82 0.0028 25.0 7.9 35 460-494 7-41 (101)
119 3iox_A AGI/II, PA; alpha helix 47.6 2.6E+02 0.009 30.2 13.6 74 475-548 10-94 (497)
120 4dk0_A Putative MACA; alpha-ha 47.4 1.2E+02 0.004 28.8 10.1 21 505-525 118-138 (369)
121 1gk4_A Vimentin; intermediate 47.4 1.1E+02 0.0039 24.8 11.2 33 511-543 35-74 (84)
122 3kp1_E D-ornithine aminomutase 47.0 7.5 0.00026 35.1 1.7 42 458-504 3-44 (121)
123 2zvf_A Alanyl-tRNA synthetase; 46.4 33 0.0011 29.8 5.8 43 487-529 17-59 (171)
124 3s4r_A Vimentin; alpha-helix, 46.4 1.3E+02 0.0045 25.2 9.2 6 459-464 15-20 (93)
125 3i2w_A Syndapin, LD46328P; EFC 46.0 1E+02 0.0036 28.6 9.4 76 477-552 63-157 (290)
126 2no2_A HIP-I, huntingtin-inter 45.5 1.5E+02 0.0051 25.6 12.9 27 461-487 16-42 (107)
127 1l8d_A DNA double-strand break 45.2 1.3E+02 0.0043 24.7 11.7 32 462-493 12-43 (112)
128 3tnu_A Keratin, type I cytoske 45.0 1.5E+02 0.0052 25.6 12.6 59 479-540 50-108 (131)
129 2ic6_A Nucleocapsid protein; h 44.7 1.4E+02 0.0048 25.1 10.1 66 464-529 6-72 (78)
130 2xdj_A Uncharacterized protein 44.6 74 0.0025 26.5 7.2 13 514-526 25-37 (83)
131 1wle_A Seryl-tRNA synthetase; 44.4 1E+02 0.0035 32.6 10.0 25 542-566 121-145 (501)
132 4dzn_A Coiled-coil peptide CC- 44.2 37 0.0013 24.5 4.5 27 509-535 2-28 (33)
133 1nkp_B MAX protein, MYC proto- 44.2 9.8 0.00034 30.6 1.9 60 459-525 18-77 (83)
134 3etw_A Adhesin A; antiparallel 44.1 1.7E+02 0.006 26.0 12.1 75 459-536 8-102 (119)
135 1x8y_A Lamin A/C; structural p 44.1 1.1E+02 0.0039 25.0 8.3 33 511-543 44-76 (86)
136 3mov_A Lamin-B1; LMNB1, B-type 43.1 1.1E+02 0.0038 25.9 8.2 33 511-543 53-85 (95)
137 2dq0_A Seryl-tRNA synthetase; 42.4 94 0.0032 32.2 9.2 11 553-563 78-88 (455)
138 1wlq_A Geminin; coiled-coil; 2 42.2 84 0.0029 26.8 7.2 35 487-522 31-65 (83)
139 2w83_C C-JUN-amino-terminal ki 42.1 1.1E+02 0.0039 25.7 7.9 36 489-524 10-45 (77)
140 3lay_A Zinc resistance-associa 42.1 1.7E+02 0.0059 27.1 10.1 20 510-529 114-133 (175)
141 1nkp_A C-MYC, MYC proto-oncoge 41.6 18 0.00063 29.9 3.2 63 459-521 22-85 (88)
142 2eqb_B RAB guanine nucleotide 41.1 70 0.0024 27.8 6.8 56 508-563 4-59 (97)
143 2wvr_A Geminin; DNA replicatio 40.5 1E+02 0.0036 30.0 8.5 63 459-522 75-142 (209)
144 2wq1_A General control protein 40.1 43 0.0015 24.5 4.4 28 463-490 3-30 (33)
145 1wt6_A Myotonin-protein kinase 39.9 1.7E+02 0.006 24.8 9.1 46 475-527 25-70 (81)
146 3va9_A Sensor histidine kinase 39.8 1.9E+02 0.0063 25.1 11.0 64 505-569 75-141 (164)
147 1ci6_A Transcription factor AT 39.5 1.3E+02 0.0046 23.4 8.2 46 478-523 13-58 (63)
148 3fhn_A Protein transport prote 39.4 2.3E+02 0.008 31.5 12.2 29 460-488 10-38 (706)
149 3lss_A Seryl-tRNA synthetase; 39.2 1E+02 0.0035 32.6 9.1 27 460-486 44-70 (484)
150 1joc_A EEA1, early endosomal a 38.9 1.7E+02 0.0059 25.3 9.0 43 474-516 4-46 (125)
151 2j69_A Bacterial dynamin-like 38.4 2.9E+02 0.0098 29.7 12.4 41 514-554 452-493 (695)
152 1ses_A Seryl-tRNA synthetase; 38.2 47 0.0016 34.0 6.2 29 512-540 67-95 (421)
153 2j69_A Bacterial dynamin-like 38.2 1.4E+02 0.0047 32.1 10.0 14 459-472 309-322 (695)
154 3kbt_A Beta-I spectrin, spectr 37.0 2.4E+02 0.0081 26.0 10.2 54 492-545 232-285 (326)
155 3aco_A Pacsin2, protein kinase 36.9 1.4E+02 0.0049 28.6 9.0 73 478-550 85-177 (350)
156 3gwk_C SAG1039, putative uncha 36.7 1.5E+02 0.0051 23.1 11.4 64 461-524 9-77 (98)
157 3ghg_C Fibrinogen gamma chain; 36.7 1E+02 0.0034 32.3 8.4 101 456-569 34-137 (411)
158 1grj_A GREA protein; transcrip 36.6 1E+02 0.0034 27.6 7.4 47 511-557 11-66 (158)
159 2ve7_C Kinetochore protein NUF 36.2 34 0.0012 33.0 4.6 40 485-524 138-177 (250)
160 3swk_A Vimentin; cytoskeleton, 35.8 1.1E+02 0.0036 25.4 6.9 11 491-501 10-20 (86)
161 1ses_A Seryl-tRNA synthetase; 35.7 1.7E+02 0.0057 30.0 9.7 33 499-531 68-100 (421)
162 2p4v_A Transcription elongatio 35.5 97 0.0033 27.8 7.1 48 511-558 11-67 (158)
163 3qne_A Seryl-tRNA synthetase, 35.2 1.2E+02 0.0043 32.0 8.9 30 512-541 74-103 (485)
164 4dzn_A Coiled-coil peptide CC- 35.1 57 0.002 23.5 4.3 29 517-545 3-31 (33)
165 3g67_A Methyl-accepting chemot 35.1 2.9E+02 0.01 26.0 15.4 13 555-567 116-128 (213)
166 3viq_B Mating-type switching p 34.6 2E+02 0.0068 24.5 8.4 60 463-522 4-68 (85)
167 4dyl_A Tyrosine-protein kinase 34.4 2.3E+02 0.008 28.3 10.4 63 490-552 81-156 (406)
168 1s94_A S-syntaxin; three helix 34.3 2.1E+02 0.0072 25.3 9.1 23 460-482 43-65 (180)
169 2xv5_A Lamin-A/C; structural p 34.3 1.7E+02 0.0057 23.9 7.7 10 534-543 44-53 (74)
170 3m9b_A Proteasome-associated A 34.3 42 0.0014 33.2 4.9 36 492-527 58-93 (251)
171 2ve7_A Kinetochore protein HEC 34.3 1E+02 0.0035 30.5 7.6 23 503-525 179-201 (315)
172 3u06_A Protein claret segregat 33.9 1.1E+02 0.0036 31.6 7.9 25 463-487 6-30 (412)
173 4e61_A Protein BIM1; EB1-like 33.8 65 0.0022 28.4 5.5 25 509-533 25-49 (106)
174 3mq9_A Bone marrow stromal ant 33.8 3.6E+02 0.012 26.7 13.2 95 463-568 355-460 (471)
175 1fxk_A Prefoldin; archaeal pro 33.6 1.9E+02 0.0064 23.3 11.6 85 459-543 7-99 (107)
176 3m3w_A Pacsin3, protein kinase 33.2 26 0.00088 33.9 3.2 34 463-496 130-163 (320)
177 2lw1_A ABC transporter ATP-bin 33.1 2E+02 0.0067 23.4 8.8 27 457-483 19-45 (89)
178 3m3w_A Pacsin3, protein kinase 33.0 2.8E+02 0.0094 26.7 10.3 72 478-549 76-167 (320)
179 1uii_A Geminin; human, DNA rep 32.4 1.9E+02 0.0064 24.7 7.8 36 486-522 38-73 (83)
180 3cvf_A Homer-3, homer protein 32.3 89 0.0031 26.2 5.8 51 492-542 3-53 (79)
181 2dq3_A Seryl-tRNA synthetase; 32.2 32 0.0011 35.2 3.8 20 469-488 32-51 (425)
182 1hjb_A Ccaat/enhancer binding 31.0 2.2E+02 0.0074 24.0 8.0 47 477-523 25-71 (87)
183 2dq3_A Seryl-tRNA synthetase; 30.8 96 0.0033 31.7 7.0 17 550-566 74-90 (425)
184 1nlw_A MAD protein, MAX dimeri 30.4 18 0.00062 29.6 1.4 44 460-503 18-62 (80)
185 3zbh_A ESXA; unknown function, 30.4 1.8E+02 0.0063 22.2 12.6 36 460-495 9-44 (99)
186 2q2f_A Selenoprotein S; anti-p 29.9 47 0.0016 28.7 3.8 27 11-37 44-70 (89)
187 3trt_A Vimentin; cytoskeleton, 29.6 2E+02 0.0069 22.4 10.2 38 499-536 39-76 (77)
188 2w6a_A ARF GTPase-activating p 29.4 2.3E+02 0.008 23.1 7.9 48 474-535 13-60 (63)
189 4dvz_A Cytotoxicity-associated 29.1 2E+02 0.0069 30.9 9.1 65 456-524 496-561 (569)
190 3o0z_A RHO-associated protein 28.9 3.7E+02 0.013 25.3 15.9 30 535-564 102-131 (168)
191 3mq7_A Bone marrow stromal ant 28.7 2.2E+02 0.0074 25.8 8.0 28 517-544 72-99 (121)
192 3u06_A Protein claret segregat 28.2 91 0.0031 32.0 6.3 31 475-505 4-34 (412)
193 2lw1_A ABC transporter ATP-bin 28.2 2.1E+02 0.0071 23.3 7.3 55 477-531 18-78 (89)
194 2cly_A ATP synthase B chain, m 28.0 2.2E+02 0.0074 27.4 8.5 22 539-560 129-151 (214)
195 1gk4_A Vimentin; intermediate 27.9 2.4E+02 0.0083 22.8 8.3 10 521-530 66-75 (84)
196 4gkw_A Spindle assembly abnorm 27.8 3.8E+02 0.013 25.0 11.5 27 457-483 8-34 (167)
197 2b5u_A Colicin E3; high resolu 27.7 6.4E+02 0.022 27.6 14.5 38 518-555 397-434 (551)
198 2ve7_A Kinetochore protein HEC 27.4 81 0.0028 31.1 5.6 37 493-529 176-212 (315)
199 1np3_A Ketol-acid reductoisome 27.2 3.9E+02 0.013 25.7 10.3 73 492-565 247-320 (338)
200 2ve7_C Kinetochore protein NUF 27.1 51 0.0017 31.8 4.0 46 501-546 140-185 (250)
201 1ci6_A Transcription factor AT 26.9 90 0.0031 24.4 4.7 27 492-518 34-60 (63)
202 3jsv_C NF-kappa-B essential mo 26.9 3.1E+02 0.011 23.8 10.1 27 469-495 4-30 (94)
203 3opc_A Uncharacterized protein 26.8 3E+02 0.01 23.6 10.8 18 462-479 17-34 (154)
204 2p22_C Protein SRN2; endosome, 26.7 4E+02 0.014 25.0 11.5 22 483-504 88-109 (192)
205 1gd2_E Transcription factor PA 26.3 93 0.0032 25.3 4.8 16 510-525 51-66 (70)
206 3htk_A Structural maintenance 26.2 2E+02 0.007 21.4 7.6 19 504-522 14-32 (60)
207 2v4h_A NF-kappa-B essential mo 26.2 3.5E+02 0.012 24.1 11.6 18 517-534 63-80 (110)
208 1dkg_A Nucleotide exchange fac 26.1 1.3E+02 0.0046 28.1 6.6 22 537-558 67-88 (197)
209 2vs0_A Virulence factor ESXA; 25.9 2.2E+02 0.0076 21.7 11.1 76 460-542 6-86 (97)
210 2ch7_A Methyl-accepting chemot 25.9 3.9E+02 0.013 24.5 15.3 59 464-522 13-71 (309)
211 3kin_B Kinesin heavy chain; mo 25.4 80 0.0027 27.3 4.6 29 499-527 86-114 (117)
212 3v86_A De novo design helix; c 25.4 76 0.0026 22.0 3.5 21 506-526 4-24 (27)
213 3m91_A Proteasome-associated A 25.4 1.5E+02 0.0051 23.0 5.6 32 493-524 14-45 (51)
214 3q0x_A Centriole protein; cent 25.1 1.8E+02 0.0063 28.2 7.5 52 508-559 170-221 (228)
215 3ni0_A Bone marrow stromal ant 25.0 3.5E+02 0.012 23.7 9.0 59 471-529 26-87 (99)
216 3mxz_A Tubulin-specific chaper 24.7 3.5E+02 0.012 23.7 11.5 71 468-539 16-86 (116)
217 1vcs_A Vesicle transport throu 24.7 1.4E+02 0.0047 25.1 5.8 76 459-547 11-98 (102)
218 1naf_A ADP-ribosylation factor 24.6 2.4E+02 0.0083 25.9 7.8 76 482-561 33-115 (158)
219 3plt_A Sphingolipid long chain 23.9 5.1E+02 0.017 25.4 10.3 74 483-557 106-181 (234)
220 1m1j_A Fibrinogen alpha subuni 23.5 6.8E+02 0.023 27.1 11.9 15 467-481 65-79 (491)
221 3etv_A Protein transport prote 23.4 75 0.0026 33.0 4.6 29 461-489 10-38 (355)
222 3he5_B Synzip2; heterodimeric 23.3 1.7E+02 0.0059 22.7 5.5 45 463-528 6-50 (52)
223 2zqm_A Prefoldin beta subunit 23.2 1.8E+02 0.0062 23.7 6.2 41 496-536 7-47 (117)
224 1grj_A GREA protein; transcrip 23.2 1.8E+02 0.0061 26.0 6.6 60 459-524 8-68 (158)
225 1gu4_A CAAT/enhancer binding p 23.1 2.6E+02 0.0088 23.1 7.0 46 477-522 25-70 (78)
226 3lss_A Seryl-tRNA synthetase; 23.0 4.2E+02 0.014 28.0 10.3 19 470-488 40-58 (484)
227 1hjb_A Ccaat/enhancer binding 22.9 2.7E+02 0.0093 23.4 7.2 6 533-538 60-65 (87)
228 4etp_A Kinesin-like protein KA 22.6 2.2E+02 0.0075 29.0 7.9 34 460-493 3-36 (403)
229 2f23_A Anti-cleavage anti-GREA 22.6 2.2E+02 0.0076 25.2 7.0 20 537-556 46-65 (156)
230 1oxz_A ADP-ribosylation factor 22.4 2.5E+02 0.0087 26.3 7.7 75 483-561 50-131 (186)
231 1l8d_A DNA double-strand break 22.2 3.2E+02 0.011 22.3 11.8 11 465-475 8-18 (112)
232 2v71_A Nuclear distribution pr 22.0 5.1E+02 0.018 24.5 15.7 102 459-560 9-131 (189)
233 4fla_A Regulation of nuclear P 21.9 4.5E+02 0.015 23.8 9.6 43 476-518 98-140 (152)
234 3cl3_D NF-kappa-B essential mo 21.6 2E+02 0.0068 26.3 6.5 35 530-569 90-124 (130)
235 3s9g_A Protein hexim1; cyclin 21.4 2.8E+02 0.0097 24.5 7.2 46 500-545 35-87 (104)
236 2z5i_A TM, general control pro 21.4 1.4E+02 0.0049 22.8 4.8 37 510-546 13-49 (52)
237 1kd8_B GABH BLL, GCN4 acid bas 21.2 1.3E+02 0.0046 22.3 4.3 27 511-537 3-29 (36)
238 3brv_B NF-kappa-B essential mo 21.1 2.6E+02 0.009 23.2 6.6 48 512-559 18-69 (70)
239 3he5_A Synzip1; heterodimeric 20.9 2.9E+02 0.0099 21.2 6.8 36 490-525 12-47 (49)
240 3opc_A Uncharacterized protein 20.9 4E+02 0.014 22.8 8.3 22 481-502 15-36 (154)
241 2nps_D Syntaxin-6; vesicle fus 20.9 3.3E+02 0.011 21.8 7.7 51 507-557 24-74 (82)
242 2efr_A General control protein 20.8 4.9E+02 0.017 23.9 15.1 40 509-548 98-137 (155)
243 2gd5_A Charged multivesicular 20.7 2.9E+02 0.01 24.8 7.5 15 549-563 52-66 (179)
244 2yy0_A C-MYC-binding protein; 20.4 1.4E+02 0.0047 23.0 4.5 27 509-535 19-45 (53)
245 3azd_A Short alpha-tropomyosin 20.4 69 0.0024 23.2 2.7 16 509-524 4-19 (37)
246 2b5u_A Colicin E3; high resolu 20.2 5.4E+02 0.018 28.2 10.4 18 462-479 293-310 (551)
247 1gl2_D Syntaxin 8, vesicle tra 20.2 2.9E+02 0.01 21.0 7.1 49 508-556 15-63 (65)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.35 E-value=0.16 Score=43.86 Aligned_cols=58 Identities=7% Similarity=0.077 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq 522 (570)
|+..|++|..+.-.+...+...+.-.+.+..+-..+....+.....+..++.++.+++
T Consensus 25 l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (284)
T 1c1g_A 25 AEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAE 82 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444333333433333333333333333333333333333
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.52 E-value=0.28 Score=49.71 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENS-----------SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENs-----------ALTdryNqQ~~~v~qLk~dmErLq~Ei~aQ 528 (570)
++...++.-|..|.+|....+++++..++-.+..-.+-. .+.+.+-+.......+.++..+++++++..
T Consensus 456 ~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (597)
T 3oja_B 456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAK 535 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhh
Confidence 355556666666777767777777666655554433222 222222222333333444445555666666
Q ss_pred HHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhc
Q 008304 529 LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRS 569 (570)
Q Consensus 529 l~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~lq 569 (570)
..+++.++.|+++.+..+....++.+.|.-|.-.+..++.+
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 67777777777788888888888888777776666655544
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.08 E-value=0.045 Score=61.81 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 008304 24 EEFRKKKA 31 (570)
Q Consensus 24 eefrkkka 31 (570)
++|..=+.
T Consensus 329 ~~f~~~~~ 336 (1184)
T 1i84_S 329 EMFQETLE 336 (1184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.81 E-value=0.2 Score=50.72 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 008304 476 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 546 (570)
Q Consensus 476 KfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~ 546 (570)
|-.|.+.+++-++..+.+..++..+-+++++......+|+.+++++++.++.+...++.++.|.++.+.+.
T Consensus 504 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 504 SDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 35566666666777777777777777777777777777778888888887777777777777766665543
No 5
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.00 E-value=0.63 Score=46.49 Aligned_cols=105 Identities=17% Similarity=0.067 Sum_probs=58.4
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-------------------HhHHHHHH
Q 008304 453 FYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN-------------------QQRSVVNQ 513 (570)
Q Consensus 453 F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryN-------------------qQ~~~v~q 513 (570)
|+.+. .+++..+++....+.+||..|...+.+.++.-+....+......+.. ++.....+
T Consensus 347 yC~s~-~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (487)
T 3oja_A 347 QYRTV-IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVE 425 (487)
T ss_dssp HTCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHH
Confidence 44443 44777778777788888888877777777555554444433322222 12222223
Q ss_pred H--------------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHH
Q 008304 514 L--------------KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS 558 (570)
Q Consensus 514 L--------------k~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAa 558 (570)
+ ++++++|++|.+.+.-+++.+..+.+-|++.+.+|..|-+.||.
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHH
Confidence 3 33333344444444444455555555566666677777777765
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.54 E-value=0.26 Score=55.98 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVR 568 (570)
Q Consensus 509 ~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~l 568 (570)
..|..|+++++.|+++++...-+.+.+..+.+..+. +-.|....|-.|.-.||.++.
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333333332 223555566666666666554
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.05 E-value=1.8 Score=41.04 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSS--LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 537 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsA--LTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ 537 (570)
+.+.+++..|+|+..+.-.+...++..++-.+..-..-.. =.+.|++....+..++..+..|+.+|...+..++.+..
T Consensus 46 ~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~ 125 (256)
T 3na7_A 46 KAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE 125 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444444333322221111 12345555555666666665555555555555555554
Q ss_pred HHHHHHhh
Q 008304 538 EYANVRLE 545 (570)
Q Consensus 538 ErdaArle 545 (570)
+.+.+...
T Consensus 126 ~l~~~~~~ 133 (256)
T 3na7_A 126 KQEDLKKE 133 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.86 E-value=2.5 Score=40.12 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=16.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 537 NEYANVRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 537 ~ErdaArle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
-||++...+...+..|-..|=-++..+.+++
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555444443
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=91.98 E-value=0.79 Score=51.89 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=4.8
Q ss_pred hhHHHHHHHHHH
Q 008304 460 EDFAALEQHIED 471 (570)
Q Consensus 460 ddFAaLqQhIeD 471 (570)
.++..|++-|++
T Consensus 857 ~El~~L~~eL~e 868 (1184)
T 1i84_S 857 EEMQAKDEELQR 868 (1184)
T ss_dssp HHCCHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444433333
No 10
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=91.35 E-value=3.1 Score=35.25 Aligned_cols=73 Identities=19% Similarity=0.374 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~ 535 (570)
+.|.+.|++|-.|+-.|-+.|+..++=.+.|-.+-...-+.||...-.+-++.+++.-+..++..-..-|+-+
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455677777777777777777777777888888888888888888888888888877777766555555444
No 11
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=91.15 E-value=1.6 Score=40.61 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=63.7
Q ss_pred HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304 493 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVR 568 (570)
Q Consensus 493 LA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~l 568 (570)
+...|..+.+.-+.....+.+|+.++.+|+.+|+...-.++.+..|+.+.+++.+.+.++.+.|=.|=-.|=+|.|
T Consensus 59 ~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 59 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666777788888889999999999999999999999999999999999999999999888766666554
No 12
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.14 E-value=4.1 Score=35.36 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA 495 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ 495 (570)
..++.|.+.|++++.||-.|+-.+...+..++.+-.
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~ 55 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999988887754
No 13
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.91 E-value=7.2 Score=32.76 Aligned_cols=70 Identities=11% Similarity=0.145 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhH
Q 008304 480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA 549 (570)
Q Consensus 480 qRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA 549 (570)
.-..+.+.+-++++-.+.-.+-++..+-...|..|+..|..|+.++..-.-.|..+......+.-.+..|
T Consensus 15 k~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~A 84 (101)
T 3u59_A 15 KLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555566666666666666666667777777777777665554444444444444443333333
No 14
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.24 E-value=6 Score=33.53 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304 484 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (570)
Q Consensus 484 eks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~a 527 (570)
+.+.+-++++-.+.-.+-++..+-...|..|+..+..|+.|+..
T Consensus 19 e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 19 ENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445555555555555555555544433
No 15
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=88.04 E-value=7.7 Score=32.58 Aligned_cols=85 Identities=21% Similarity=0.235 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHH---HHHHHH---
Q 008304 484 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE---RAKILA--- 557 (570)
Q Consensus 484 eks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~E---Rak~LA--- 557 (570)
++-.+-++.|-.|.+...+++.+--..+.++....+++.+||.+-.-.+..+..|.|.+...+..|.. -+.-.+
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~A 84 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777788888888888888888888888888888888777777777777777766666642 222223
Q ss_pred -Hhhhhhhhhhh
Q 008304 558 -SEVIGLEEKVR 568 (570)
Q Consensus 558 -aEVV~LEEk~l 568 (570)
+||-.|--||.
T Consensus 85 E~evasLnRriq 96 (101)
T 3u59_A 85 EAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 37777766654
No 16
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.56 E-value=11 Score=35.31 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=57.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~E 538 (570)
++-...||.-|+||...=-+-..+.+|.++..-.|......+-...++....+..|+.....|++|+..-...|+.-+..
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~ 84 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRD 84 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667789899998765555556667777666666666666666666666666666666666666665555555555544
Q ss_pred HHHHHhhhhhHHHHHHHHHHhh
Q 008304 539 YANVRLECNAADERAKILASEV 560 (570)
Q Consensus 539 rdaArle~~aA~ERak~LAaEV 560 (570)
|..+-....+...|-..|-.|+
T Consensus 85 r~q~se~~~elq~ri~~L~~El 106 (168)
T 3o0z_A 85 RGHDSEMIGDLQARITSLQEEV 106 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.80 E-value=5.5 Score=50.45 Aligned_cols=120 Identities=14% Similarity=0.274 Sum_probs=74.6
Q ss_pred ccccccccchhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhhhHHHHHHHHh
Q 008304 450 QHGFYSTKHNEDFAA-----LEQHIEDLTQEKFALQRSLEASRALSESLA-----------------AENSSLTDSYNQQ 507 (570)
Q Consensus 450 ~~~F~s~~~~ddFAa-----LqQhIeDLT~EKfaLqRaLeks~~laEsLA-----------------~ENsALTdryNqQ 507 (570)
-|+|.+|++==+|=. |.+..+++...+--|+.||+|-.+.+++++ .|.+++...--..
T Consensus 1888 R~~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~ 1967 (3245)
T 3vkg_A 1888 RQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967 (3245)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777666644 567778888888888888887655554432 2334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhH-----------------HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhc
Q 008304 508 RSVVNQLKSEMEKLQEEIKVQLVELESFR-----------------NEYANVRLECNAADERAKILASEVIGLEEKVRS 569 (570)
Q Consensus 508 ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~-----------------~ErdaArle~~aA~ERak~LAaEVV~LEEk~lq 569 (570)
...+++-|..++..+.+++.|..+.+..+ .|.+.|+.+..+|.++-+..-.++-.||+++-+
T Consensus 1968 ~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~ 2046 (3245)
T 3vkg_A 1968 QQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIAT 2046 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554444433 445566677777777777777777777777654
No 18
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=86.73 E-value=7.3 Score=36.11 Aligned_cols=84 Identities=20% Similarity=0.134 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 008304 466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 545 (570)
Q Consensus 466 qQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle 545 (570)
++.++.+..++......|+++++.=+.+..|-+.+...+..-..-.+.=+.+++++++........++..+.||..+...
T Consensus 115 ~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~ 194 (301)
T 2efk_A 115 FQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQR 194 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555666666666666666666666665543211000012345555655555556667777888888777
Q ss_pred hhhH
Q 008304 546 CNAA 549 (570)
Q Consensus 546 ~~aA 549 (570)
++..
T Consensus 195 ~n~~ 198 (301)
T 2efk_A 195 FNRD 198 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7777
No 19
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.97 E-value=7.5 Score=35.07 Aligned_cols=70 Identities=21% Similarity=0.281 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 471 DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 471 DLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
.||+-.-.|.++-.++---.+++.+=+.+|...-=+.-..|.+|+.+++.|.++++-..+++|.++.|-.
T Consensus 33 qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 33 ELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 6888888898888888777777777777777655555567999999999999999999999999997665
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.80 E-value=12 Score=42.67 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 484 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 530 (570)
Q Consensus 484 eks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~ 530 (570)
....+.+.+|-.|.+.|.+.+........+|++.+++++.+++....
T Consensus 980 ~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~ 1026 (1080)
T 2dfs_A 980 KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666666666666666666666655553333
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.54 E-value=16 Score=32.71 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=34.6
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhh
Q 008304 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK 566 (570)
Q Consensus 492 sLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk 566 (570)
.+|+|--.+.+.+......+.++.+++..|.. +|.++..+++.+..+.....++-..|=-+++.||-.
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~-------el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKH-------ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444 444444555555555555555555555566666543
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.53 E-value=5 Score=35.97 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhcC
Q 008304 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRSL 570 (570)
Q Consensus 509 ~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~lqL 570 (570)
+.+-.++++.+.|+++++...-++..++.|...++..+..+...-..|-.|+=.|++++-+|
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666677777888888888888888777777777777777776553
No 23
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=84.90 E-value=18 Score=31.23 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--hHH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304 468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ--QRS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (570)
Q Consensus 468 hIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNq--Q~~--~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr 543 (570)
||+=| ++.-...+-|..++...+.+..+-..|.+++.+ +.. .+.+-...|+.|++||.....+|..|+..++...
T Consensus 3 Hi~LL-RK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~ 81 (107)
T 2no2_A 3 HADLL-RKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSA 81 (107)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 334445555666666666666666666666655 211 2233345567777777777788888888888888
Q ss_pred hhhhhHHHHHHHHHHhhhhhhh
Q 008304 544 LECNAADERAKILASEVIGLEE 565 (570)
Q Consensus 544 le~~aA~ERak~LAaEVV~LEE 565 (570)
++--.-.++-..+.+|--.|+.
T Consensus 82 ~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 82 QSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 8777777776777777666654
No 24
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.72 E-value=12 Score=31.53 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=46.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~ 535 (570)
.-+=|..||+-|+.+-. .++|+ +--.+.|-.+|..|....++-.+....|..+.++|++|..+=...|.++
T Consensus 4 S~ElleqLE~KIq~avd-tI~lL------qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 4 SLEVFEKLEAKVQQAID-TITLL------QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp CHHHHHHHHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888877643 33333 2345667777777777777777777778888888887766555444443
No 25
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=84.64 E-value=10 Score=48.26 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 467 QHIEDLTQEKFALQRSLEASR------ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 467 QhIeDLT~EKfaLqRaLeks~------~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
+.-++....|-.-++.|+++. +-.+.+.++-.+...+.++-...+.+|.+++++|+++.+....+-+.++.|.+
T Consensus 1987 ~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 1987 VRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp HHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455566666666666653 22334455556666777778888888888888999888888888888888888
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 541 NVRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 541 aArle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
..+.....|..=-..|+.|-+--++.+
T Consensus 2067 ~~~~kl~rA~~Li~gL~~Ek~RW~~~~ 2093 (3245)
T 3vkg_A 2067 KVKNKVDRSIALLDNLNSERGRWEQQS 2093 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccccHHHHH
Confidence 888888887777777888766555544
No 26
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=84.64 E-value=2.7 Score=32.90 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=25.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHH
Q 008304 503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 553 (570)
Q Consensus 503 ryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERa 553 (570)
+.++....|.+|..++.+|..++.+ ++.+..+|+-|+..|.+|-
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~a-------l~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANA-------ARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Confidence 3445556666666666666655443 4445556666666666664
No 27
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=84.13 E-value=12 Score=34.61 Aligned_cols=68 Identities=10% Similarity=0.169 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHH--------------HHHHHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 008304 482 SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS--------------EMEKLQEEIKVQLVELESFRNEYANVRLECN 547 (570)
Q Consensus 482 aLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~--------------dmErLq~Ei~aQl~~LEs~~~ErdaArle~~ 547 (570)
.+.+.++-.+....+-.....+|.+....+..++. ++|+++.........++..+.||-.+...++
T Consensus 124 ~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n 203 (305)
T 2efl_A 124 DGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFN 203 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444455555555554444444 3444444443344445566667766666665
Q ss_pred hH
Q 008304 548 AA 549 (570)
Q Consensus 548 aA 549 (570)
..
T Consensus 204 ~~ 205 (305)
T 2efl_A 204 HE 205 (305)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 28
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=82.92 E-value=15 Score=30.49 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 462 FAALEQHIEDLTQEKFALQRSLEASRALSESL 493 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsL 493 (570)
...|++.|+.+|.||-.|+=.+...+..++.+
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edf 33 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRL 33 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999888888877777665
No 29
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=82.61 E-value=0.74 Score=48.87 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAE 496 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~E 496 (570)
|++-+..+.+|--..+.+|.++++.++.|+.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~ 371 (575)
T 2i1j_A 340 YQDRLRQMQEEMERSQANLLEAQDMILRLEEQ 371 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33344444444444444555555555544443
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.55 E-value=7 Score=33.03 Aligned_cols=60 Identities=23% Similarity=0.372 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmE 519 (570)
+-++-||.-|++|-++.-.|....+.++.-.+.|.+||.-|.+..+.=...+..|=.+|+
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456778889999999999999999888888889999998887777776666666655553
No 31
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=82.29 E-value=22 Score=30.06 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-------h------HHHHHHHHHHHHHHHHHHHHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ-------Q------RSVVNQLKSEMEKLQEEIKVQLV 530 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNq-------Q------~~~v~qLk~dmErLq~Ei~aQl~ 530 (570)
+|+.+++=-..+.-...+.|.+++...+.....-..|...+++ . ...+-....=+..|...|..|..
T Consensus 9 ~L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~ 88 (150)
T 3ajw_A 9 ALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777666666666666666666666555555555553322 1 23344667778889999999999
Q ss_pred HhhhhHHHHHHHHhhhhhHHHHHHHHH
Q 008304 531 ELESFRNEYANVRLECNAADERAKILA 557 (570)
Q Consensus 531 ~LEs~~~ErdaArle~~aA~ERak~LA 557 (570)
.|..+..+.+.+|....+|.-+-+++-
T Consensus 89 ~l~~~~~~~e~~r~~l~~a~~~~k~~e 115 (150)
T 3ajw_A 89 QLTQWTQKVDLALKSWREKKQRLQAWQ 115 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988887777653
No 32
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=81.33 E-value=3.7 Score=39.36 Aligned_cols=57 Identities=21% Similarity=0.416 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008304 470 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (570)
Q Consensus 470 eDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~ 526 (570)
|-||+=|-+++-.|+.+-.|++.|..||..|++.--..-.++.+|+++++-|+++++
T Consensus 2 d~~~~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 2 DPLTVYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 457888999999999999999999999999998877667777777777777776653
No 33
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=81.09 E-value=27 Score=30.29 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 008304 485 ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 563 (570)
Q Consensus 485 ks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~L 563 (570)
..|+..+.+..||..|.-..+-....+..+|.+.|.-....+.-..++..++-..|.+-+.-.+..-+...|--|+.-|
T Consensus 24 ~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 24 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666555555555555555554433333333334556667777777777777777777777766654
No 34
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=79.78 E-value=27 Score=29.53 Aligned_cols=86 Identities=16% Similarity=0.208 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHH---HHHHHH-
Q 008304 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER---AKILAS- 558 (570)
Q Consensus 483 Leks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ER---ak~LAa- 558 (570)
+++-.+=++.|-.|.+...+++.+--..+.++....+++++||.+..-.+..+..|+|.++..+..|.+. +...+.
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~ 83 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAK 83 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777777888888887778888888888888888777777777777777777666665432 222333
Q ss_pred ---hhhhhhhhhh
Q 008304 559 ---EVIGLEEKVR 568 (570)
Q Consensus 559 ---EVV~LEEk~l 568 (570)
||-.|--||.
T Consensus 84 aE~ev~~L~Rriq 96 (101)
T 3u1c_A 84 AESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777766654
No 35
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=77.62 E-value=27 Score=37.56 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 476 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (570)
Q Consensus 476 KfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~ 531 (570)
|-+++.+|+.-++-...+.+||+++-.| |+++ ..+-..++++.+.++++...+
T Consensus 29 ka~Ye~~~ae~~a~n~~i~aeNeaikkr-Na~a--ka~Ye~~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 29 KAAYEAAVAANNAANAALTAENTAIKKR-NADA--KADYEAKLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777788899998744 5554 122233455555555444443
No 36
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=77.21 E-value=17 Score=38.04 Aligned_cols=94 Identities=21% Similarity=0.326 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhh--------HHHHHHHHh-HHHHHHHHHHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSES----------LAAENS--------SLTDSYNQQ-RSVVNQLKSEMEKLQE 523 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEs----------LA~ENs--------ALTdryNqQ-~~~v~qLk~dmErLq~ 523 (570)
.-|..-|++|+++.+.|+|...-...++-. .+.+|+ .|-++++-. .-+.++|. .|..||.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~ 141 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQK 141 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHH
Confidence 345678888888888887765544332221 222333 233333322 22333444 6666777
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHH
Q 008304 524 EIKVQLVELESFRNEYANVRLECNAADERAKILA 557 (570)
Q Consensus 524 Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LA 557 (570)
.|+.|+++..-|....|-.+-.|.-+=.|+-.+-
T Consensus 142 ~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~ 175 (390)
T 1deq_A 142 NVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHK 175 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchhhhhh
Confidence 7777777777777777777777777766654443
No 37
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=76.64 E-value=6.8 Score=30.62 Aligned_cols=44 Identities=14% Similarity=0.257 Sum_probs=24.2
Q ss_pred HHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 008304 490 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 545 (570)
Q Consensus 490 aEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle 545 (570)
+++|..+-..|+.+..+..+.|+.|+.++..-+.| ++|+|.|+.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~e------------A~RAN~RlD 49 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDD------------AARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhhh
Confidence 44555555555555555555555555544444433 567777664
No 38
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=76.46 E-value=4.1 Score=38.51 Aligned_cols=89 Identities=11% Similarity=0.118 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr 543 (570)
.++..++.+..++......|+++++-=+.++.|-+.+..+++...+--.--++++++++..+.-...++...+.||..+.
T Consensus 140 ~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v 219 (312)
T 3abh_A 140 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSL 219 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555566666667666666666666665554322110000013333333333333344444556666666
Q ss_pred hhhhhHHHH
Q 008304 544 LECNAADER 552 (570)
Q Consensus 544 le~~aA~ER 552 (570)
..++.+..+
T Consensus 220 ~~~n~~~~~ 228 (312)
T 3abh_A 220 KELDQGTPQ 228 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhHHH
Confidence 665555444
No 39
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=75.72 E-value=10 Score=31.47 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=23.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhc
Q 008304 537 NEYANVRLECNAADERAKILASEVIGLEEKVRS 569 (570)
Q Consensus 537 ~ErdaArle~~aA~ERak~LAaEVV~LEEk~lq 569 (570)
.|+...+..|.+|.||...|.+-=+.||.++-.
T Consensus 49 ~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~e 81 (89)
T 3bas_A 49 EQKNDLFGSMKQLEDKVEELLSKNYHLENEVAR 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333888888888888888888887743
No 40
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=75.68 E-value=50 Score=30.49 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH------------HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 008304 478 ALQRSLEASRALSESLAAENSSLTDSYN------------QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 545 (570)
Q Consensus 478 aLqRaLeks~~laEsLA~ENsALTdryN------------qQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle 545 (570)
.+.++...-..-++.+|..+..+.+.++ ++......++..+++++.++.....+|+..+..|+.+-.+
T Consensus 66 t~~~~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e 145 (301)
T 2efk_A 66 SQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCRE 145 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555552 2233344555677778888888888888888888877766
Q ss_pred hhhHHHH
Q 008304 546 CNAADER 552 (570)
Q Consensus 546 ~~aA~ER 552 (570)
+..|...
T Consensus 146 ~e~a~~~ 152 (301)
T 2efk_A 146 AEKAAQT 152 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665444
No 41
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=75.07 E-value=6.6 Score=33.37 Aligned_cols=54 Identities=26% Similarity=0.361 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHH---HhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhc
Q 008304 516 SEMEKLQEEIKVQLV---ELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRS 569 (570)
Q Consensus 516 ~dmErLq~Ei~aQl~---~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~lq 569 (570)
..-..|+.||++..+ +|..+++.--+++-...+|..|-+.|..|+-.|++++..
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777665 456666777778888888888888999998888887754
No 42
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=74.34 E-value=17 Score=30.36 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=26.3
Q ss_pred HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 008304 493 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 545 (570)
Q Consensus 493 LA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle 545 (570)
|....+.|-....+.++.++++.-+|++|++.-+....+|+.....-..|+++
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~~~~~~~~ 77 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSGGAAAQLE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44444455555555666677777777777666666666665555544444444
No 43
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=73.98 E-value=27 Score=33.23 Aligned_cols=87 Identities=10% Similarity=0.095 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaA 542 (570)
..++..++.+..++......|+++++.=+.+..|-+.....++.......--.+++++++..+.-...+++..+.||..+
T Consensus 130 K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~ 209 (337)
T 2x3v_A 130 KEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKV 209 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666677777777777776665544444432211000012344444444444444555556666666
Q ss_pred HhhhhhH
Q 008304 543 RLECNAA 549 (570)
Q Consensus 543 rle~~aA 549 (570)
...++.+
T Consensus 210 v~~~n~~ 216 (337)
T 2x3v_A 210 LEDVGKT 216 (337)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6555555
No 44
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=73.77 E-value=21 Score=26.88 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008304 476 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (570)
Q Consensus 476 KfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~ 526 (570)
+-.|++-+....+....+-.+-+.+..+||+....++...++|..++.+|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555554555555566666777788877788888888877776653
No 45
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=72.45 E-value=7.1 Score=37.75 Aligned_cols=89 Identities=11% Similarity=0.118 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr 543 (570)
.++..++.+..++..+...|+++++-=+.++.|-+.+..+++...+.-.--.+++++++..+.-...+++..+.||..+.
T Consensus 140 ~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v 219 (350)
T 3aco_A 140 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSL 219 (350)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555566666666666666655555544321100000024555555555555556666677777777
Q ss_pred hhhhhHHHH
Q 008304 544 LECNAADER 552 (570)
Q Consensus 544 le~~aA~ER 552 (570)
..++.+..+
T Consensus 220 ~~~n~~~~~ 228 (350)
T 3aco_A 220 KELDQGTPQ 228 (350)
T ss_dssp HHHHTTHHH
T ss_pred HHHHHHHHH
Confidence 777766544
No 46
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=72.34 E-value=9.5 Score=29.67 Aligned_cols=35 Identities=34% Similarity=0.500 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 008304 487 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 521 (570)
Q Consensus 487 ~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErL 521 (570)
++-+..|+.-|..|++-..+-+.++..|+++|++|
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44457888889999888888888888888888876
No 47
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=71.72 E-value=33 Score=30.35 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
-+..|..-|+.| |..|.+-...++..+.+|-.-...|--.+=.|.....+...+.++|+.|+ ..++..+.+=.
T Consensus 16 ~Ie~Lkreie~l---k~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~----~~l~~~~~~~~ 88 (120)
T 3i00_A 16 LIERLYREISGL---KAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAEL----DELRRQREDTE 88 (120)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTTCC---
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhH
Confidence 455566655555 34455556666666666654444443333333333333344444443322 22333333444
Q ss_pred HHHhhhhhHHHHHHH
Q 008304 541 NVRLECNAADERAKI 555 (570)
Q Consensus 541 aArle~~aA~ERak~ 555 (570)
.|+..+.+|..||++
T Consensus 89 ~~q~~~~e~E~kAqa 103 (120)
T 3i00_A 89 KAQRSLSEIERKAQA 103 (120)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555666666654
No 48
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=71.21 E-value=31 Score=34.21 Aligned_cols=62 Identities=19% Similarity=0.190 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHh----hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 479 LQRSLEASRALSESLAAE----NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 479 LqRaLeks~~laEsLA~E----NsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
|||.|.+.|+.-.++... |-.++-----.-..+.|-+..++.|+.||..+-..|+.+++|..
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778887777765554332 21111111111122333334556666666666555555555543
No 49
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=70.65 E-value=27 Score=32.13 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=32.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHH
Q 008304 505 NQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER 552 (570)
Q Consensus 505 NqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ER 552 (570)
.++......+++++++++.++..+..+|+..+..|..+-.++..|...
T Consensus 112 ~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~ 159 (305)
T 2efl_A 112 QELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQY 159 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566677777888888887787777777777666666655543
No 50
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.71 E-value=68 Score=31.99 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304 496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (570)
Q Consensus 496 ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr 543 (570)
|=+.+.+........+++|+++-++++.++..-..+++...+.|..|.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 333344445555666777777777787777777777777777776654
No 51
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=69.70 E-value=4.8 Score=39.80 Aligned_cols=36 Identities=33% Similarity=0.477 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304 487 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (570)
Q Consensus 487 ~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq 522 (570)
++-.++|...|..|++..++...++..||+++++|+
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334456666666666666555555555555555554
No 52
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=69.25 E-value=94 Score=32.95 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 507 Q~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
...+|++....||+.+..|+... ...+.......+.......++-+.|...|-.|.++|
T Consensus 140 n~n~~~~~~~~~e~~~~~i~~~~--~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~ 198 (464)
T 1m1j_B 140 NDIILSEYNTEMELHYNYIKDNL--DNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYC 198 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH--hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33345555555555554443221 111222222222233344455555555555555554
No 53
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=68.52 E-value=35 Score=26.23 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008304 475 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 525 (570)
Q Consensus 475 EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei 525 (570)
-+.|-+|-=++-.+-++.|..+...|+....+....|..|+.++.+|.+.+
T Consensus 9 Nr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 9 NRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555666677778888888887777777777788888887777553
No 54
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=68.17 E-value=35 Score=29.21 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=57.4
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 451 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 530 (570)
Q Consensus 451 ~~F~s~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~ 530 (570)
-+|..=-....-.+|++.|++|.+|--.-.++-+.-.+|. .+-.+|+++-|-=. +...+.+....|+.|+.++.-...
T Consensus 6 ~d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~-~vY~~nP~~GD~~s-~~~~L~e~~~kid~L~~el~K~q~ 83 (98)
T 2ke4_A 6 EDFSHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMK-DVYEKTPQMGDPAS-LEPQIAETLSNIERLKLEVQKYEA 83 (98)
T ss_dssp SCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-HHHHHCGGGCCGGG-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555567788999999999988666666655544443 45668888864433 377888889999999988755554
Q ss_pred Hhhhh
Q 008304 531 ELESF 535 (570)
Q Consensus 531 ~LEs~ 535 (570)
-|+.+
T Consensus 84 ~L~e~ 88 (98)
T 2ke4_A 84 WLAEA 88 (98)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 55
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=67.36 E-value=54 Score=30.87 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhH-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008304 478 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN 537 (570)
Q Consensus 478 aLqRaLeks~~laEsLA~ENsALTdryNqQ~-~~v-------------------~qLk~dmErLq~Ei~aQl~~LEs~~~ 537 (570)
.|.++...-..-++.+|..+..|.+..+.+- ..+ ..+...+++++.++..+...|+..+.
T Consensus 85 tl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK~ 164 (312)
T 3abh_A 85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 164 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666667777777777777766432 222 34556677788888888888999988
Q ss_pred HHHHHHhhhhhHHHH
Q 008304 538 EYANVRLECNAADER 552 (570)
Q Consensus 538 ErdaArle~~aA~ER 552 (570)
.|+.+-.+...|..+
T Consensus 165 ~Y~~~c~e~e~a~~~ 179 (312)
T 3abh_A 165 AHHAACKEEKLAISR 179 (312)
T ss_dssp HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877776666543
No 56
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=66.83 E-value=50 Score=26.78 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHhHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE---NSSLTDSYNQQRSV 510 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~E---NsALTdryNqQ~~~ 510 (570)
.=+|+.|++++.+|....-.|+..|+.-+..++.|... --+-...|.+.-.+
T Consensus 10 ~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~ 64 (103)
T 4i0x_B 10 SFDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKE 64 (103)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHH
Confidence 35899999999999999999999999999999999887 44455556554433
No 57
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=66.62 E-value=70 Score=28.35 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=37.6
Q ss_pred HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008304 489 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (570)
Q Consensus 489 laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs 534 (570)
-.|.=..+.+.|++++..--..+..|+....++++++..|+..|..
T Consensus 39 k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~ 84 (112)
T 1x79_B 39 SSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566788899999888889999999999999999998887754
No 58
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=66.47 E-value=18 Score=37.08 Aligned_cols=87 Identities=11% Similarity=0.117 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr 543 (570)
.+++++..+.+++......|+++++.=+....|-+.+..++..-....+.-++++++++..++....+++..+.||..+.
T Consensus 133 ~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v 212 (486)
T 3haj_A 133 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSL 212 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555566666666666666655554444321000000024556666655555566677777777777
Q ss_pred hhhhhHH
Q 008304 544 LECNAAD 550 (570)
Q Consensus 544 le~~aA~ 550 (570)
..++...
T Consensus 213 ~~~n~~~ 219 (486)
T 3haj_A 213 KELDQGT 219 (486)
T ss_dssp HHHHTTS
T ss_pred HHHHHHH
Confidence 7776654
No 59
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=65.77 E-value=16 Score=31.87 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=30.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHH
Q 008304 502 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES--FRNEYAN 541 (570)
Q Consensus 502 dryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs--~~~Erda 541 (570)
+.|+.-+..|..|+.+.++|+++++...+.|+. ++.+|+.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~ 53 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQ 53 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 477888888888888888888888887777776 4456655
No 60
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=65.31 E-value=45 Score=29.83 Aligned_cols=68 Identities=9% Similarity=0.217 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 532 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALT-dryNqQ~~~v~qLk~dmErLq~Ei~aQl~~L 532 (570)
|++..+++|+---.|--+-+|-++-.+....+...+- .-|-++..+|+.|+.++.+|++.++.+..+.
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~ 92 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIATG 92 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666667766666666666666666666655555543 3467788999999999999999887766543
No 61
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=65.09 E-value=48 Score=26.79 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008304 482 SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (570)
Q Consensus 482 aLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs 534 (570)
.++.+.+=++++-.+....-.+.-+.-..|..|++.|..|+.++..-.-.|..
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455555555666666666666554443333333
No 62
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=64.93 E-value=46 Score=28.89 Aligned_cols=35 Identities=26% Similarity=0.213 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHH
Q 008304 480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL 514 (570)
Q Consensus 480 qRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qL 514 (570)
.-.|++....-..|...+..|....|.....+.+.
T Consensus 26 ke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E 60 (129)
T 2fxo_A 26 KEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAE 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555556666666666665544444433
No 63
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=64.86 E-value=14 Score=28.68 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008304 476 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (570)
Q Consensus 476 KfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~ 526 (570)
+.|-+|-=++-.+-++.|..+-..|+..-......|..|+.++.+|.+.+.
T Consensus 10 r~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 10 RIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666777777777777777766666777777777777765543
No 64
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=64.63 E-value=32 Score=26.82 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008304 475 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (570)
Q Consensus 475 EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~ 526 (570)
-|.|-.|-=++-++.++.|..+...|...-......|.+|+.++.+|...+.
T Consensus 10 NR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 10 NKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666677777777777776666666667777777777765543
No 65
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=63.62 E-value=67 Score=27.10 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~E 538 (570)
.++..+|+.-+.+|-.|.-.|.+.|..-.+--+.|+.| --.......+|..+=+++-++.-.....+-.|-.|
T Consensus 3 ~~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~e-------l~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE 75 (96)
T 3q8t_A 3 GSDSEQLQRELKELALEEERLIQELEDVEKNRKVVAEN-------LEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDE 75 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999887655444444444 44444555666666666666666666666566666
Q ss_pred HHHHHhhh
Q 008304 539 YANVRLEC 546 (570)
Q Consensus 539 rdaArle~ 546 (570)
++.....+
T Consensus 76 ~~Sl~~q~ 83 (96)
T 3q8t_A 76 LKSVENQM 83 (96)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544433
No 66
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=63.49 E-value=14 Score=35.90 Aligned_cols=40 Identities=10% Similarity=0.258 Sum_probs=34.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008304 498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 537 (570)
Q Consensus 498 sALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ 537 (570)
.-|+.|||+-...+..|...+++.+.|+..+.+-|+..+.
T Consensus 167 ~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~ 206 (228)
T 3q0x_A 167 QFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQ 206 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999998888877653
No 67
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=63.27 E-value=1.1e+02 Score=29.67 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=59.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008304 458 HNEDFAALEQHIEDLTQEKFALQRS----LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~EKfaLqRa----Leks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LE 533 (570)
+.|+|..|-..+..|...=-.+... ...-...+++|+.-...+.....+|...+.++...|++|-..+..-....+
T Consensus 32 ~~DEig~l~~~~n~~~~~l~~~i~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~q~~~~~~~~~~~~el~~~~~~~~~~~~ 111 (341)
T 3zx6_A 32 RADEIGILAKSIERLRRSLMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENAR 111 (341)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999888888876643222222 222233445566666667777777777777777777777765554443334
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhh
Q 008304 534 SFRNEYANVRLECNAADERAKILASEVIGLEE 565 (570)
Q Consensus 534 s~~~ErdaArle~~aA~ERak~LAaEVV~LEE 565 (570)
.+...-..+...+....+....+...+-.|.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (341)
T 3zx6_A 112 QASHLALSASETAQRGGKVVDNVVQTMRDIST 143 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433334444444444444444444434443
No 68
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=63.04 E-value=72 Score=28.35 Aligned_cols=67 Identities=12% Similarity=0.298 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALT-dryNqQ~~~v~qLk~dmErLq~Ei~aQl 529 (570)
+.|++..+++|+---.|--+-+|-++-.++...+...+- .-|=++.++|++|+.++.+|++.++...
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888887777777777777776666666666554 3467788999999999999998876544
No 69
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.59 E-value=78 Score=27.51 Aligned_cols=94 Identities=20% Similarity=0.280 Sum_probs=53.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHhHHHHHHHHHHH----HHHHH-------
Q 008304 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE--NSSLTDSYNQQRSVVNQLKSEM----EKLQE------- 523 (570)
Q Consensus 457 ~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~E--NsALTdryNqQ~~~v~qLk~dm----ErLq~------- 523 (570)
....||..|-|-|. .-=|.+-..+..=+.++.+|.+. +..|.++.......+++|=.++ .+|..
T Consensus 7 ~d~~ef~~l~~~is---~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~ 83 (130)
T 2dnx_A 7 GQLRDFSSIIQTCS---GNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLST 83 (130)
T ss_dssp CCSCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSH
T ss_pred CCChhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 34567777655543 33455555566666666666543 4556666665555544443333 33322
Q ss_pred -HHHHHHHHhhhhHHHHHHHHhhhhhHHHHH
Q 008304 524 -EIKVQLVELESFRNEYANVRLECNAADERA 553 (570)
Q Consensus 524 -Ei~aQl~~LEs~~~ErdaArle~~aA~ERa 553 (570)
+=+.|....+-|..|..++-.++..+..++
T Consensus 84 ~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~ 114 (130)
T 2dnx_A 84 SEQRQQRLQKERLMNDFSAALNNFQAVQRRV 114 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112355667777777777777777666554
No 70
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=61.75 E-value=78 Score=30.11 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=17.8
Q ss_pred HHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008304 490 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 525 (570)
Q Consensus 490 aEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei 525 (570)
+..|..||..|.+.+|+-..+++++-..-++++.++
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L 176 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDL 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555544444444444443
No 71
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=61.40 E-value=83 Score=32.71 Aligned_cols=97 Identities=11% Similarity=0.168 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304 459 NEDFAALEQHIEDL---TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (570)
Q Consensus 459 ~ddFAaLqQhIeDL---T~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~ 535 (570)
+.+|..||..++++ |.|-+.|...++....- ++. ...+..|.++.....+.+++.+|+.-|..+...+..+
T Consensus 37 ~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~-----~Q~-~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l 110 (409)
T 1m1j_C 37 DGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPS-----EKQ-TLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQL 110 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS-----STT-CCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccC-CCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 35777777665554 45555555555444111 111 2334455556666667777777766666665555555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304 536 RNEYANVRLECNAADERAKILASEVIGLEEKVR 568 (570)
Q Consensus 536 ~~ErdaArle~~aA~ERak~LAaEVV~LEEk~l 568 (570)
..-+. ....+-..|-..|..||++|.
T Consensus 111 ~~~~~-------~~~~~i~~l~~~i~~l~~~~~ 136 (409)
T 1m1j_C 111 TDMHI-------MNSNKITQLKQKIAQLESHCQ 136 (409)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHH-------hhHHHHHHHHHHHHHHHHHhh
Confidence 54433 233445556667777777764
No 72
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=61.07 E-value=76 Score=27.70 Aligned_cols=67 Identities=12% Similarity=0.279 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQLV 530 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALT-dryNqQ~~~v~qLk~dmErLq~Ei~aQl~ 530 (570)
-|++..+++|.---.|--+-++-++-.++.......+- .-|-++..+|++|+.+|.+|++.++....
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36666777777666676666666666666666655554 34677889999999999999988765544
No 73
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=60.93 E-value=60 Score=28.68 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhH
Q 008304 479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA 549 (570)
Q Consensus 479 LqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA 549 (570)
|.|.+++-+.-.+.|-.|......+| .+.|++|+.+++.-+.+.+--+.+++.++.|.+..+...+++
T Consensus 20 Lkreie~lk~ele~l~~E~q~~v~ql---~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~ 87 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQRVVLQL---KGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDT 87 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 66667666666666655555444433 234455555555555454455677888888888766555544
No 74
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=60.82 E-value=1.2e+02 Score=28.92 Aligned_cols=101 Identities=22% Similarity=0.274 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhHHHHHHHHhHHH----HHHHHHHHHHHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEAS-----------RALSESLAAENSSLTDSYNQQRSV----VNQLKSEMEKLQEEI 525 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks-----------~~laEsLA~ENsALTdryNqQ~~~----v~qLk~dmErLq~Ei 525 (570)
.+..|+.-.+|..+.=-.|...|++. +.-+..|..|.+.+-++|+++... ++.|++++..|+.+.
T Consensus 25 ~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~ 104 (189)
T 2v71_A 25 SFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIK 104 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444444444432 233456677777777788777666 778888777777554
Q ss_pred HH---HHHHhhhhHHHHHH-----------HHhhhhhHHHHHHHHHHhhh
Q 008304 526 KV---QLVELESFRNEYAN-----------VRLECNAADERAKILASEVI 561 (570)
Q Consensus 526 ~a---Ql~~LEs~~~Erda-----------Arle~~aA~ERak~LAaEVV 561 (570)
.. ++.+||..--++.+ .....+.|.||--.|=.|+-
T Consensus 105 ~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 105 EQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 33344433322211 23356777888777777664
No 75
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=60.45 E-value=44 Score=29.44 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHh
Q 008304 472 LTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI---KVQLVELESFRNEYANVRL 544 (570)
Q Consensus 472 LT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei---~aQl~~LEs~~~ErdaArl 544 (570)
|.-||-+|.=.++--....|.+.+....+.+.|.+....+..+|.....|+.++ +.|+...+.|-.|+-++-+
T Consensus 21 LDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~E~~~~~~ 96 (103)
T 4h22_A 21 LDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLEPKLAAAL 96 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC--------
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445565555555444444444444444444444444444444444444444332 2344444555555554443
No 76
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=60.16 E-value=91 Score=27.51 Aligned_cols=74 Identities=23% Similarity=0.243 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhHHHHHHHHhHH----HHHHHHHHHHHHHHHH---HHHHHHhhhhHHHHHHH-----------HhhhhhH
Q 008304 488 ALSESLAAENSSLTDSYNQQRS----VVNQLKSEMEKLQEEI---KVQLVELESFRNEYANV-----------RLECNAA 549 (570)
Q Consensus 488 ~laEsLA~ENsALTdryNqQ~~----~v~qLk~dmErLq~Ei---~aQl~~LEs~~~ErdaA-----------rle~~aA 549 (570)
.-++.|.-|++.+-.+|+++.. .++.|++++.+|+.+- +.++-+||.---++.++ ...++.|
T Consensus 10 ~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a 89 (111)
T 2v66_B 10 ADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA 89 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3456778888888888887754 5777888888887553 34444455444332222 2456788
Q ss_pred HHHHHHHHHhhh
Q 008304 550 DERAKILASEVI 561 (570)
Q Consensus 550 ~ERak~LAaEVV 561 (570)
.||--.|=.|+-
T Consensus 90 iErnalLE~El~ 101 (111)
T 2v66_B 90 IERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877765
No 77
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.08 E-value=50 Score=36.00 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 466 EQHIEDLTQEKFALQRSLEASRALSESL 493 (570)
Q Consensus 466 qQhIeDLT~EKfaLqRaLeks~~laEsL 493 (570)
-+-|+||..+-+.|++.-.-+...++.+
T Consensus 63 tkrINELKnqLEdlsKnsKdseqy~k~~ 90 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQKNNKDSHSLTTNI 90 (562)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence 3567777777777766655554444433
No 78
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=58.89 E-value=6.2 Score=30.56 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=18.6
Q ss_pred HHHHHHhhhHHHHHHHHhHHHHHHHHHHHHH
Q 008304 490 SESLAAENSSLTDSYNQQRSVVNQLKSEMEK 520 (570)
Q Consensus 490 aEsLA~ENsALTdryNqQ~~~v~qLk~dmEr 520 (570)
+|.|-.||+.|-.+|++....+.+|+..+++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555566666666666666666666655543
No 79
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=58.48 E-value=15 Score=37.48 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 008304 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKV 567 (570)
Q Consensus 509 ~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~ 567 (570)
+.+.+|+.+++.|+++++.....++.+..|+.............-|.|--++..|...|
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 34566667777777776666666777777776666666666666677777777766544
No 80
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=58.38 E-value=91 Score=26.92 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHH
Q 008304 510 VVNQLKSEMEKLQEEIKVQLVELE-------SFRNEYANVR 543 (570)
Q Consensus 510 ~v~qLk~dmErLq~Ei~aQl~~LE-------s~~~ErdaAr 543 (570)
.+..|..++.+++.+++.|+.+.. ++-.|.+.+|
T Consensus 83 ~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 83 KLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666654432 3445655554
No 81
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=58.19 E-value=72 Score=25.72 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=24.3
Q ss_pred HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhH
Q 008304 493 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA 549 (570)
Q Consensus 493 LA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA 549 (570)
|-.|-+...+++.+--..+.+.....++++.||.+-.-.+..+..|.+.+...+..|
T Consensus 11 lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 11 LKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444433333
No 82
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=57.84 E-value=77 Score=25.93 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA 495 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ 495 (570)
-..|..|++.++.|..++-.|.+.+.....+.+.|..
T Consensus 12 i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~ 48 (117)
T 2zqm_A 12 LGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIES 48 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4579999999999999999999999998888888864
No 83
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=57.18 E-value=1.7e+02 Score=29.81 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-HH-------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008304 478 ALQRSLEASRALSESLAAENSSLTDSYNQQ-RS-------------------VVNQLKSEMEKLQEEIKVQLVELESFRN 537 (570)
Q Consensus 478 aLqRaLeks~~laEsLA~ENsALTdryNqQ-~~-------------------~v~qLk~dmErLq~Ei~aQl~~LEs~~~ 537 (570)
.|..++..-..-++.+|..+..+.+....+ .. ....++..+++++++++.+..+|+..+.
T Consensus 78 tl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaKk 157 (486)
T 3haj_A 78 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 157 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666777777776666322 11 2345556678888889999999999999
Q ss_pred HHHHHHhhhhhHHHHHHH
Q 008304 538 EYANVRLECNAADERAKI 555 (570)
Q Consensus 538 ErdaArle~~aA~ERak~ 555 (570)
.|..+-.+...|..+.+.
T Consensus 158 ~Y~~~cke~e~a~~~~~~ 175 (486)
T 3haj_A 158 AHHAACKEEKLAISREAN 175 (486)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 998888887777655443
No 84
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=57.14 E-value=87 Score=29.44 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=41.2
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhH------HHHHHHHhhhhhHHHHHHHHHHh
Q 008304 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE-SFR------NEYANVRLECNAADERAKILASE 559 (570)
Q Consensus 491 EsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LE-s~~------~ErdaArle~~aA~ERak~LAaE 559 (570)
.++|.++..+-.+|..++..+.++=.++..|+.+...+..++. .+. +=+...+..+.+++|-+..|+..
T Consensus 75 ~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~ 150 (192)
T 2p22_C 75 RDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETT 150 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677777777777777777777777777766554442 221 23444555555555555555543
No 85
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=57.03 E-value=28 Score=33.47 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=15.5
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (570)
Q Consensus 491 EsLA~ENsALTdryNqQ~~~v~qLk~dmErLq 522 (570)
+.|..+...+.++|=+....+..+++.+++=.
T Consensus 69 ~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~ 100 (213)
T 4ani_A 69 AELEAKLSEMEHRYLRLYADFENFRRRTRQEM 100 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444444444444333
No 86
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=56.91 E-value=48 Score=31.19 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008304 465 LEQHIEDLTQEKFALQRSLEAS 486 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks 486 (570)
++..|+.+..+--.++..|+++
T Consensus 67 ~~~~~~~~~a~l~~~~a~l~~a 88 (341)
T 3fpp_A 67 AENQIKEVEATLMELRAQRQQA 88 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333333333333
No 87
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=56.59 E-value=16 Score=29.75 Aligned_cols=7 Identities=43% Similarity=0.866 Sum_probs=4.6
Q ss_pred HHHHHHH
Q 008304 466 EQHIEDL 472 (570)
Q Consensus 466 qQhIeDL 472 (570)
++||.+|
T Consensus 28 ~~~i~~L 34 (70)
T 1gd2_E 28 EDHLKAL 34 (70)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4666666
No 88
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=56.31 E-value=1.8e+02 Score=31.20 Aligned_cols=84 Identities=20% Similarity=0.253 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHhhhhh
Q 008304 481 RSLEASRALSESLAAENSSLTDSYNQQRSV-----------VNQLKSEMEKLQEEIKVQ-LVELESFRNEYANVRLECNA 548 (570)
Q Consensus 481 RaLeks~~laEsLA~ENsALTdryNqQ~~~-----------v~qLk~dmErLq~Ei~aQ-l~~LEs~~~ErdaArle~~a 548 (570)
+.++..++=+|.+-.|++.|.++-.++-.. |.||+++||+-++.+..+ .-.|+.--.|..+-..+.
T Consensus 487 k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g-- 564 (592)
T 1f5n_A 487 KEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG-- 564 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344444555555555555555444333332 344666666544443322 223332223322222222
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 008304 549 ADERAKILASEVIGLEEK 566 (570)
Q Consensus 549 A~ERak~LAaEVV~LEEk 566 (570)
-.+.++.|-.|+-.|..+
T Consensus 565 ~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 565 FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 347788888898888775
No 89
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.31 E-value=78 Score=27.45 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHH
Q 008304 510 VVNQLKSEMEKLQEEIKVQLVELE-------SFRNEYANVR 543 (570)
Q Consensus 510 ~v~qLk~dmErLq~Ei~aQl~~LE-------s~~~ErdaAr 543 (570)
.+..|..++.+++.+++.|+.+.. ++-.|.+.+|
T Consensus 85 ~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 85 MIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYR 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666554432 3445665554
No 90
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=55.57 E-value=36 Score=29.66 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEAS 486 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks 486 (570)
.++.-.|.+-|++|..|.-.|.+-.+.-
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688889999999999988887766543
No 91
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=55.09 E-value=70 Score=24.64 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLA-----AENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA-----~ENsALTdryNqQ~~~v~qLk~dmErLq~E 524 (570)
=+++.|++...++....-.|+..|.+-+..++.|. ....+....||+-...+.++...++.+.++
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~ 78 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999885 345566666665555555555555555544
No 92
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=54.54 E-value=91 Score=25.77 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=14.7
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHHHHHHH
Q 008304 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEK 520 (570)
Q Consensus 491 EsLA~ENsALTdryNqQ~~~v~qLk~dmEr 520 (570)
+.|-.-...++..++.-...+..|+.+.++
T Consensus 50 ~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~ 79 (127)
T 1ez3_A 50 EELEELMSDIKKTANKVRSKLKSIEQSIEQ 79 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555443
No 93
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=54.47 E-value=23 Score=30.31 Aligned_cols=40 Identities=13% Similarity=0.216 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhh
Q 008304 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 548 (570)
Q Consensus 509 ~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~a 548 (570)
.+...|..++..|+.|+.....+++.+.-|+|+.++.|.+
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777788888887776654
No 94
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=54.41 E-value=1.8e+02 Score=29.66 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=32.1
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008304 497 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (570)
Q Consensus 497 NsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~ 536 (570)
-..|+.++-.....|.+++.-.++|++++++|....-.+.
T Consensus 200 ~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 239 (373)
T 3hhm_B 200 IQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREID 239 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888899999999999999999998877644333
No 95
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=54.33 E-value=24 Score=31.44 Aligned_cols=60 Identities=13% Similarity=0.234 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~E 524 (570)
.+.+.+|++.++.++.++-....+++.+++..+ | .||.......++| ..+...+..|+.+
T Consensus 9 ~~g~~~L~~el~~~~~~r~~~~~~i~~A~~~GD-l-sEnaey~aak~~q----~~~e~ri~~L~~~ 68 (156)
T 2f23_A 9 KAGYERLMQQLERERERLQEATKILQELMESSD-D-YDDSGLEAAKQEK----ARIEARIDSLEDI 68 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC-C-SCSHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-hhhhhHHHHHHHH----HHHHHHHHHHHHH
Confidence 678999999999987787777777777665411 0 2565443333333 3344445555544
No 96
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=54.29 E-value=64 Score=28.03 Aligned_cols=10 Identities=20% Similarity=0.415 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 008304 465 LEQHIEDLTQ 474 (570)
Q Consensus 465 LqQhIeDLT~ 474 (570)
-|++|++|.+
T Consensus 21 kq~~id~lke 30 (94)
T 3jsv_C 21 KQELIDKLKE 30 (94)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3444444444
No 97
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=54.04 E-value=83 Score=29.26 Aligned_cols=59 Identities=24% Similarity=0.165 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLE-------ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 521 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLe-------ks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErL 521 (570)
.++-+.|..|+.|.-.|.+-+. .-.++.|.|-+|..+|.=.||.+...+..|+.+=.+|
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666655544 4457788888888888888888777777777655444
No 98
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=53.63 E-value=44 Score=27.14 Aligned_cols=60 Identities=10% Similarity=0.012 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKVR 568 (570)
Q Consensus 509 ~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~l 568 (570)
..|.++|..|..|+.|+.--+..++.+..|||=+=....++....+..-.|+..|=.||+
T Consensus 2 ~~m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~ 61 (75)
T 3mtu_A 2 ASMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIV 61 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 457888888888888888888888888888886555544444444443334444444443
No 99
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=53.35 E-value=1.3e+02 Score=31.99 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=5.6
Q ss_pred HHHhhhhhhhhh
Q 008304 556 LASEVIGLEEKV 567 (570)
Q Consensus 556 LAaEVV~LEEk~ 567 (570)
|-..|..||.++
T Consensus 180 l~~ki~~l~~~~ 191 (464)
T 1m1j_B 180 LHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444555544
No 100
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=53.02 E-value=1.1e+02 Score=33.35 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=21.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 008304 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN 547 (570)
Q Consensus 499 ALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~ 547 (570)
.|-+++......|..-...|.-||.-|+.|++++.-|.-..|+..-.|-
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCK 162 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCR 162 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333333333333333344444444455555555545444554444443
No 101
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=52.29 E-value=31 Score=35.78 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=12.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008304 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 499 ALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl 529 (570)
+|..+-.+.+..+.+|+.++..+++++...+
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444443333
No 102
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=51.93 E-value=34 Score=32.47 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 008304 515 KSEMEKLQEE 524 (570)
Q Consensus 515 k~dmErLq~E 524 (570)
+.+++..+.+
T Consensus 121 ~~~~~~a~a~ 130 (369)
T 4dk0_A 121 KATLNNAKAE 130 (369)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 103
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=51.67 E-value=66 Score=29.30 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHhhhhHHHHHHH
Q 008304 487 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEK--------------LQEEIKVQLVELESFRNEYANV 542 (570)
Q Consensus 487 ~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmEr--------------Lq~Ei~aQl~~LEs~~~ErdaA 542 (570)
...++.+|..+..+.+..|+-...+..+..++++ ++.+++.+...|+..+..|..+
T Consensus 79 ~~~~e~~a~~h~~~a~~l~~~~~~l~~~~~~~~~~rK~~~~~~~~~~~~~~~~~~~~~~l~Kak~~Y~~~ 148 (276)
T 2v0o_A 79 KTSTEKLANCHLDLVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAK 148 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777776555555555555543 3334444445555555544444
No 104
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=50.81 E-value=52 Score=28.56 Aligned_cols=34 Identities=35% Similarity=0.442 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008304 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENS 498 (570)
Q Consensus 465 LqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENs 498 (570)
.|++|+.|-.+...|++.|+.+....+.|..+|.
T Consensus 16 ~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~ 49 (125)
T 1joc_A 16 GEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQ 49 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3455666666666666666555555555554443
No 105
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=50.76 E-value=88 Score=29.40 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=6.1
Q ss_pred hhhHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDL 472 (570)
Q Consensus 459 ~ddFAaLqQhIeDL 472 (570)
..+.+.++..++.+
T Consensus 68 ~~~~~~~~a~l~~~ 81 (341)
T 3fpp_A 68 ENQIKEVEATLMEL 81 (341)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 106
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=50.59 E-value=11 Score=35.13 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaA 542 (570)
..+++.++.+..++-.....|+++++.-+.+..|-+.....+..-....+.-..++++++..+.-....++..+.||..+
T Consensus 117 K~~~~~~~k~~k~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~~~Y~~~ 196 (290)
T 3i2w_A 117 KDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQA 196 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666777777888888888888876555544432111111123334444333333333344445555555
Q ss_pred HhhhhhHHH
Q 008304 543 RLECNAADE 551 (570)
Q Consensus 543 rle~~aA~E 551 (570)
...++....
T Consensus 197 v~~~n~~~~ 205 (290)
T 3i2w_A 197 IAEITKYNS 205 (290)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhH
Confidence 555555433
No 107
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=50.48 E-value=38 Score=35.85 Aligned_cols=32 Identities=3% Similarity=0.125 Sum_probs=13.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 530 (570)
Q Consensus 499 ALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~ 530 (570)
+|..+-.+.+..+.+|+.++..+++++...++
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333
No 108
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=50.46 E-value=45 Score=35.24 Aligned_cols=30 Identities=3% Similarity=0.236 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 511 v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
+.+|+.++..|.++|+....++..+.+|+.
T Consensus 118 ~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 118 YQSLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 109
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=50.35 E-value=92 Score=27.53 Aligned_cols=54 Identities=26% Similarity=0.350 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 470 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 530 (570)
Q Consensus 470 eDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~ 530 (570)
+||-+|=+.|.+-+++. .+||--|-..-.+-+..|.+|..+|++|..|-+.-+.
T Consensus 33 qELIqEYl~LE~~~s~l-------e~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRM-------EDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777664 3444444333333477888888888888876444333
No 110
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=50.32 E-value=40 Score=31.33 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008304 466 EQHIEDLTQEKFALQRSL 483 (570)
Q Consensus 466 qQhIeDLT~EKfaLqRaL 483 (570)
.|.--+||.|.-+=.|.|
T Consensus 62 ~q~~LnLT~EQq~ql~~I 79 (175)
T 3lay_A 62 QQGGSPLTTEQQATAQKI 79 (175)
T ss_dssp ------CCHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHH
Confidence 444457888865544444
No 111
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=50.32 E-value=1.9e+02 Score=28.95 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhHHHHHHHH---------HHHHHHHHHHHHHHHH
Q 008304 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLA-AENSSLTDSYNQQRSVVNQLK---------SEMEKLQEEIKVQLVE 531 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA-~ENsALTdryNqQ~~~v~qLk---------~dmErLq~Ei~aQl~~ 531 (570)
+..|.+.|.|+.++|-.+.-...+.+.-..... .+-+.....|.+.-..+...+ .++++++.-.+....+
T Consensus 100 ~~~l~~~~ke~~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~~k~ke~eK~~~k~~k~~~~ 179 (406)
T 4dyl_A 100 LSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDKYVRSLWK 179 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHH
Confidence 344555555554444333333333333333333 333333444444333333222 4566777777777777
Q ss_pred hhhhHHHHHHHHhhhhhHHHH
Q 008304 532 LESFRNEYANVRLECNAADER 552 (570)
Q Consensus 532 LEs~~~ErdaArle~~aA~ER 552 (570)
+...+.||-.+...+|+...+
T Consensus 180 ~~~a~neY~~~l~~~N~~~~~ 200 (406)
T 4dyl_A 180 LFAHHNRYVLGVRAAQLHHQH 200 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877766544
No 112
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=50.03 E-value=37 Score=30.48 Aligned_cols=60 Identities=17% Similarity=0.362 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDL-TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (570)
Q Consensus 459 ~ddFAaLqQhIeDL-T~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~E 524 (570)
.+.+.+|++.++.| +.++-++.++++.+++.-+- .||. .|=+.+.....+...+..|+.+
T Consensus 8 ~~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDl--sENa----eY~aak~~q~~~e~rI~~L~~~ 68 (158)
T 2p4v_A 8 REGYEKLKQELNYLWREERPEVTKKVTWAASLGDR--SENA----DYQYNKKRLREIDRRVRYLTKC 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCT--TTCH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCc--ccch----hHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999 66888888888777754221 2553 3444445555566666666544
No 113
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=49.97 E-value=1.7e+02 Score=27.69 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHh-HHHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 008304 479 LQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV-------------------NQLKSEMEKLQEEIKVQLVELESFRNE 538 (570)
Q Consensus 479 LqRaLeks~~laEsLA~ENsALTdryNqQ-~~~v-------------------~qLk~dmErLq~Ei~aQl~~LEs~~~E 538 (570)
|.++...-..-++.+|..+..+.+.+..+ ...+ ..+...+++++.++..+..+|+..+..
T Consensus 77 l~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~ 156 (337)
T 2x3v_A 77 LERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKA 156 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSCSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666677777777777666432 1222 334445678888888899999999988
Q ss_pred HHHHHhhhhhHH
Q 008304 539 YANVRLECNAAD 550 (570)
Q Consensus 539 rdaArle~~aA~ 550 (570)
|+.+-.+...|.
T Consensus 157 Y~~~c~e~e~a~ 168 (337)
T 2x3v_A 157 YHLACKEERLAM 168 (337)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777765554
No 114
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=49.46 E-value=1.4e+02 Score=26.52 Aligned_cols=16 Identities=6% Similarity=0.123 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHhhhhH
Q 008304 521 LQEEIKVQLVELESFR 536 (570)
Q Consensus 521 Lq~Ei~aQl~~LEs~~ 536 (570)
++.++.+-+.+.|-+.
T Consensus 74 Y~~DF~aERadREkl~ 89 (110)
T 2v4h_A 74 YKADFQAERHAREKLV 89 (110)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHccchhhHHHHH
Confidence 3333333333333333
No 115
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=49.33 E-value=1.3e+02 Score=26.05 Aligned_cols=62 Identities=16% Similarity=0.227 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhh
Q 008304 487 RALSESLAAENSSLTD---SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 548 (570)
Q Consensus 487 ~~laEsLA~ENsALTd---ryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~a 548 (570)
..|..+|..|.+.+.+ ++......-.+|...|..|+..+....-....+..+...++.+|.+
T Consensus 51 ~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~ 115 (129)
T 2fxo_A 51 NDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSE 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555444432 2333333333333444444433333334444455555555555543
No 116
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.29 E-value=1.3e+02 Score=25.96 Aligned_cols=57 Identities=9% Similarity=0.223 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 481 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 481 RaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
-.|+..+.....|-..-..+-.+|. ..+..++..+..|+.+++.-..+++..-.||.
T Consensus 50 ~el~~l~~~~~~LE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 106 (129)
T 3tnu_B 50 AEIDNVKKQCANLQNAIADAEQRGE---LALKDARNKLAELEEALQKAKQDMARLLREYQ 106 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444444444433333344443 24455555566666555444444444444443
No 117
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=49.03 E-value=86 Score=24.35 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE 496 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~E 496 (570)
+|+.|+++..+|....-.|+-.|+.-+..++.|...
T Consensus 6 ~~~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~ 41 (94)
T 3fav_B 6 NFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAA 41 (94)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 688999999999999999998888888888888643
No 118
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=48.51 E-value=82 Score=25.03 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLA 494 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA 494 (570)
=+|+.|+++..++..-.-.|+..|..-...++.|.
T Consensus 7 v~~~~l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~ 41 (101)
T 3fav_A 7 TDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQ 41 (101)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999998887777777777666666663
No 119
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=47.60 E-value=2.6e+02 Score=30.18 Aligned_cols=74 Identities=11% Similarity=0.146 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHH--------HHHHHHHHHHhhhhH---HHHHHHH
Q 008304 475 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL--------QEEIKVQLVELESFR---NEYANVR 543 (570)
Q Consensus 475 EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErL--------q~Ei~aQl~~LEs~~---~ErdaAr 543 (570)
+.-++|-.|+|-++-.+.+-+++++......++-.++.+..+.+++. +++++.+..+|+... +||++..
T Consensus 10 ~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl 89 (497)
T 3iox_A 10 KLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKL 89 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777777777777777777777777777666666666555543 334555566666555 4555544
Q ss_pred hhhhh
Q 008304 544 LECNA 548 (570)
Q Consensus 544 le~~a 548 (570)
..+.+
T Consensus 90 ~aYe~ 94 (497)
T 3iox_A 90 KAYED 94 (497)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 120
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=47.37 E-value=1.2e+02 Score=28.82 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=8.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 008304 505 NQQRSVVNQLKSEMEKLQEEI 525 (570)
Q Consensus 505 NqQ~~~v~qLk~dmErLq~Ei 525 (570)
.+....+.+.+.+++.++.++
T Consensus 118 ~~a~~~~~~a~a~~~~~~~~l 138 (369)
T 4dk0_A 118 NTAKATLNNAKAEMDVVQENI 138 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444333
No 121
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=47.35 E-value=1.1e+02 Score=24.82 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHH
Q 008304 511 VNQLKSEMEKLQEEIKVQLVE-------LESFRNEYANVR 543 (570)
Q Consensus 511 v~qLk~dmErLq~Ei~aQl~~-------LEs~~~ErdaAr 543 (570)
+..|..++.+++.+++.|+.+ --++-.|.+.+|
T Consensus 35 i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 35 IGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344444444444444444433 234456666665
No 122
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=47.02 E-value=7.5 Score=35.05 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=31.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 008304 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY 504 (570)
Q Consensus 458 ~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdry 504 (570)
+.|||...-+|+.+||.|-+. +++++||+..++.--.|.++|
T Consensus 3 r~ddf~~r~~hl~~l~d~el~-----~rar~LA~kIv~pv~el~~~h 44 (121)
T 3kp1_E 3 RADDFQQRRAHLANLSDEELQ-----TRFWEMAEKIVDPLLDLGKKN 44 (121)
T ss_dssp ---CHHHHTGGGTTCCHHHHH-----HHHHHHHHHHHHHHHHHHHHE
T ss_pred chhHHHHHHHHHHhCCHHHHH-----HHHHHHHHHHHHHHHHHHHcC
Confidence 579999999999999999764 567777777777776666655
No 123
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=46.43 E-value=33 Score=29.85 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008304 487 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 487 ~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl 529 (570)
+++++.|-.-.+.|.++..+....+.+|++++++|++++....
T Consensus 17 ~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 17 REASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445444457777777777778888888888887766543
No 124
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=46.37 E-value=1.3e+02 Score=25.19 Aligned_cols=6 Identities=50% Similarity=0.850 Sum_probs=2.9
Q ss_pred hhhHHH
Q 008304 459 NEDFAA 464 (570)
Q Consensus 459 ~ddFAa 464 (570)
++.||.
T Consensus 15 NdRlAs 20 (93)
T 3s4r_A 15 NDRFAN 20 (93)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 445554
No 125
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=45.99 E-value=1e+02 Score=28.57 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-HHHH------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008304 477 FALQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV------------------NQLKSEMEKLQEEIKVQLVELESFRN 537 (570)
Q Consensus 477 faLqRaLeks~~laEsLA~ENsALTdryNqQ-~~~v------------------~qLk~dmErLq~Ei~aQl~~LEs~~~ 537 (570)
-.|.+++..-..-++.+|..+..+.+....+ ...+ ..+...+++++.++..+..+|+..+.
T Consensus 63 gs~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~e~~~k~~~~~kerK~~~~~~~k~~k~~~~~~~~l~kaKk 142 (290)
T 3i2w_A 63 GTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKA 142 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCEETTEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566667777777776666332 1222 44556677888888888899999999
Q ss_pred HHHHHHhhhhhHHHH
Q 008304 538 EYANVRLECNAADER 552 (570)
Q Consensus 538 ErdaArle~~aA~ER 552 (570)
.|+.+-.+...|..+
T Consensus 143 ~Y~~~c~e~~~a~~~ 157 (290)
T 3i2w_A 143 DYHSACKTERSATNQ 157 (290)
T ss_dssp HHHHHHHTTTSCC--
T ss_pred HHHHHHHHHHHHHHH
Confidence 998887776666543
No 126
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=45.51 E-value=1.5e+02 Score=25.59 Aligned_cols=27 Identities=33% Similarity=0.309 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASR 487 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~ 487 (570)
..+..+|.-+|+.++|-.|.+-|++..
T Consensus 16 qL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 16 QVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999999999999988855
No 127
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.23 E-value=1.3e+02 Score=24.73 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 462 FAALEQHIEDLTQEKFALQRSLEASRALSESL 493 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaLqRaLeks~~laEsL 493 (570)
...|+.-|.+|..++..|...++.-.+....|
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666666666655555555555444
No 128
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.00 E-value=1.5e+02 Score=25.61 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 479 LqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
|+-.|+..+.....|-..-..+-.+|. ..+..++..+..|+.+++.-..+++..-.||.
T Consensus 50 L~~el~~l~~~~~sLE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq 108 (131)
T 3tnu_A 50 LEIELQSQLSMKASLENSLEETKGRYC---MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYK 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333444443 23445555566666555444444444444443
No 129
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=44.69 E-value=1.4e+02 Score=25.13 Aligned_cols=66 Identities=12% Similarity=0.283 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALT-dryNqQ~~~v~qLk~dmErLq~Ei~aQl 529 (570)
-|++..+++|.---.|--+-+|-++-.++...+...+- .-|-++..+|+.|+.++.+|++.++...
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777666776666666666666666655553 3477788999999999999998876543
No 130
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=44.61 E-value=74 Score=26.54 Aligned_cols=13 Identities=23% Similarity=0.463 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 008304 514 LKSEMEKLQEEIK 526 (570)
Q Consensus 514 Lk~dmErLq~Ei~ 526 (570)
|...+++|++||+
T Consensus 25 Lq~Ql~~Lq~Ev~ 37 (83)
T 2xdj_A 25 LQQQLSDNQSDID 37 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 131
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=44.38 E-value=1e+02 Score=32.58 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=10.2
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhh
Q 008304 542 VRLECNAADERAKILASEVIGLEEK 566 (570)
Q Consensus 542 Arle~~aA~ERak~LAaEVV~LEEk 566 (570)
.+.+.....++-+.|-.+.-.||++
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~ 145 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQ 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444443
No 132
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=44.21 E-value=37 Score=24.46 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304 509 SVVNQLKSEMEKLQEEIKVQLVELESF 535 (570)
Q Consensus 509 ~~v~qLk~dmErLq~Ei~aQl~~LEs~ 535 (570)
+++.+||.++.-|..||.+---++.++
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666655544443333
No 133
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=44.18 E-value=9.8 Score=30.60 Aligned_cols=60 Identities=17% Similarity=0.320 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 525 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei 525 (570)
++-|..|..+|-.+...|.+=---|..+.+-...|-.++..|.. .+.+|+.+.+.|+++|
T Consensus 18 n~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~-------e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 18 KDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ-------DIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 45567777766655545555555566666777777666666543 4455555555555443
No 134
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=44.13 E-value=1.7e+02 Score=26.03 Aligned_cols=75 Identities=17% Similarity=0.391 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHH---HHHHHHHHHHHH--------HHHHHHHHHHHhhhHH---------HHHHHHhHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDL---TQEKFALQRSLE--------ASRALSESLAAENSSL---------TDSYNQQRSVVNQLKSEM 518 (570)
Q Consensus 459 ~ddFAaLqQhIeDL---T~EKfaLqRaLe--------ks~~laEsLA~ENsAL---------TdryNqQ~~~v~qLk~dm 518 (570)
...|.+|++-++.| ..++|.-+++.+ ..+++-+.+.+--..| -+.| ..+|++++..+
T Consensus 8 ~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y---~~l~k~Y~~~~ 84 (119)
T 3etw_A 8 VGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQY---QELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH---HHHHHHHHHHH
Confidence 35678888555544 556666655443 2222222222211111 2223 34567777788
Q ss_pred HHHHHHHHHHHHHhhhhH
Q 008304 519 EKLQEEIKVQLVELESFR 536 (570)
Q Consensus 519 ErLq~Ei~aQl~~LEs~~ 536 (570)
..|+.+|+.|...++.|.
T Consensus 85 keLd~~ik~qekiIdnFE 102 (119)
T 3etw_A 85 KKLEAEMEQQKAVISDFE 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888887774
No 135
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=44.10 E-value=1.1e+02 Score=25.03 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (570)
Q Consensus 511 v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr 543 (570)
+.+++.+|++.-+|.+.-+-.--++-.|.+.+|
T Consensus 44 l~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 44 MAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333444444333333332222224446665555
No 136
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=43.09 E-value=1.1e+02 Score=25.89 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008304 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (570)
Q Consensus 511 v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaAr 543 (570)
+.+++.+|++.-+|.+.-+-.--++-.|.+.+|
T Consensus 53 L~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYr 85 (95)
T 3mov_A 53 MAEIRDQMQQQLNDYEQLLDVKLALDMEISAYR 85 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333322222223445555544
No 137
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=42.41 E-value=94 Score=32.21 Aligned_cols=11 Identities=9% Similarity=0.193 Sum_probs=4.0
Q ss_pred HHHHHHhhhhh
Q 008304 553 AKILASEVIGL 563 (570)
Q Consensus 553 ak~LAaEVV~L 563 (570)
++.|..++-.|
T Consensus 78 ~~~~~~~~~~~ 88 (455)
T 2dq0_A 78 SREIVKRIGEL 88 (455)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 138
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=42.16 E-value=84 Score=26.82 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304 487 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (570)
Q Consensus 487 ~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq 522 (570)
.+|-+.| .||..|-....+....++.||.+.++|+
T Consensus 31 ~AL~eaL-~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 31 KALYEAL-KENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 5788887776666666666666666665
No 139
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=42.08 E-value=1.1e+02 Score=25.74 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=24.6
Q ss_pred HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008304 489 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (570)
Q Consensus 489 laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~E 524 (570)
=+|.|-.||..|-+.-|+.--+-+.|=..++.|-.|
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E 45 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTCE 45 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 367888899999888887665555555555555533
No 140
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=42.06 E-value=1.7e+02 Score=27.10 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008304 510 VVNQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 510 ~v~qLk~dmErLq~Ei~aQl 529 (570)
.|.+|-++|..|+.++..++
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444433
No 141
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=41.58 E-value=18 Score=29.90 Aligned_cols=63 Identities=30% Similarity=0.334 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLT-QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 521 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT-~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErL 521 (570)
++-|..|..+|=.+. .+|.+=---|.++.+-...|-.++..+....++......+|+..+++|
T Consensus 22 n~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 22 KRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777776663 356655566777778888888888777766555444444555444444
No 142
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.13 E-value=70 Score=27.80 Aligned_cols=56 Identities=30% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 008304 508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 563 (570)
Q Consensus 508 ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~L 563 (570)
+..++.|+.++.+|+.++..--.++..+..++...+..+..|..+-+.+-.||=.|
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 143
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=40.50 E-value=1e+02 Score=29.96 Aligned_cols=63 Identities=25% Similarity=0.350 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQE-----KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~E-----KfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq 522 (570)
+.+++.+.+-.+|||.. .|==.=|=+|..+|-+.| .||..|-.+..+....|..||.+.++|+
T Consensus 75 nk~~~~~~ieaeDL~~~e~Pse~YWk~lAE~RR~AL~eaL-eEN~~Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 75 NKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEAL-KENEKLHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp ----------------CCSCCTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477777778888632 111111222334454554 5788888887777777777777777776
No 144
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=40.14 E-value=43 Score=24.48 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALS 490 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~la 490 (570)
.-||.-||+|+.+|..|+-.+++-++|.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4688999999999999998888877764
No 145
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.90 E-value=1.7e+02 Score=24.80 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304 475 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (570)
Q Consensus 475 EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~a 527 (570)
-|-.+++.|.+-+. +|-++..+..+--..-.+|..+|++|+.+++.
T Consensus 25 AKQ~i~EELs~vr~-------~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 25 TRQSLSREMEAIRT-------DNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333 33333344444445555566666666655443
No 146
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase family 9, phosphotransfer, transferase two-component system; 2.30A {Rhodopseudomonas palustris}
Probab=39.83 E-value=1.9e+02 Score=25.08 Aligned_cols=64 Identities=17% Similarity=0.112 Sum_probs=34.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HhhhhhHHHHHHHHHHhhhhhhhhhhc
Q 008304 505 NQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV---RLECNAADERAKILASEVIGLEEKVRS 569 (570)
Q Consensus 505 NqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaA---rle~~aA~ERak~LAaEVV~LEEk~lq 569 (570)
-.|...+.+|+..+++...+++. ..++-.-..+-..+ ...+...+.+-+.+..+++.-|++.|.
T Consensus 75 p~Q~~~l~~l~~~~~~~~~~~~~-~i~l~~~~~~~a~~~~~~~~Gk~~md~iR~~~~~~~~~E~~lL~ 141 (164)
T 3va9_A 75 PEQIAHIDELRLLTDMRMAQLGR-VVELGPERMREALDILEQARVDRLTERIETSLSVLTRAEQALLI 141 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHCGGGHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666655555432 22221111111111 124456788888888888888887663
No 147
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.52 E-value=1.3e+02 Score=23.40 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008304 478 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 523 (570)
Q Consensus 478 aLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~ 523 (570)
|-.|-=++-++-.+.|..+...|...=.+....|..|+.++..|.+
T Consensus 13 AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 13 AATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555554444444444555555544443
No 148
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=39.44 E-value=2.3e+02 Score=31.50 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRA 488 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~ 488 (570)
+|.-.+.+||+++.+||..|-+.|+..+.
T Consensus 10 ~dl~~i~~~i~~~~~~r~~l~~~~~~~~~ 38 (706)
T 3fhn_A 10 DDLLNINDRIKQVQNERNELASKLQNLKQ 38 (706)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667899999999999999999988876
No 149
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=39.21 E-value=1e+02 Score=32.58 Aligned_cols=27 Identities=7% Similarity=-0.005 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEAS 486 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks 486 (570)
++...|++.+|+|-.|+=.+.+.+.+.
T Consensus 44 ~~~r~~~~~~~~l~~~rN~~sk~i~~~ 70 (484)
T 3lss_A 44 KKWRRTQFLTEASKKLINICSKAVGAK 70 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666655443
No 150
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=38.89 E-value=1.7e+02 Score=25.26 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHH
Q 008304 474 QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 516 (570)
Q Consensus 474 ~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~ 516 (570)
.||.+|+-..-+...=++.|-.++.+|..++..+...+.+|.+
T Consensus 4 ~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~ 46 (125)
T 1joc_A 4 DERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGR 46 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555544333333333455555555555555555555544443
No 151
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=38.38 E-value=2.9e+02 Score=29.68 Aligned_cols=41 Identities=2% Similarity=0.063 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHhhhhhHHHHHH
Q 008304 514 LKSEMEKLQEEIKVQLVE-LESFRNEYANVRLECNAADERAK 554 (570)
Q Consensus 514 Lk~dmErLq~Ei~aQl~~-LEs~~~ErdaArle~~aA~ERak 554 (570)
+..+++.+...+...+.. ++.+..|.......++++.++-+
T Consensus 452 i~~~f~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (695)
T 2j69_A 452 ITDKSAAWTLTAEKDINAAFKELSRSASQYGASYNQITDQIT 493 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333 45566777777788888888866
No 152
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=38.25 E-value=47 Score=33.97 Aligned_cols=29 Identities=21% Similarity=0.088 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008304 512 NQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (570)
Q Consensus 512 ~qLk~dmErLq~Ei~aQl~~LEs~~~Erd 540 (570)
.+|+.++..|.++|+.-..++..+..|+.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 153
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=38.24 E-value=1.4e+02 Score=32.09 Aligned_cols=14 Identities=7% Similarity=0.328 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDL 472 (570)
Q Consensus 459 ~ddFAaLqQhIeDL 472 (570)
...|..|.++|.+.
T Consensus 309 ~~Gi~~L~~~L~~~ 322 (695)
T 2j69_A 309 GTGFPKFMDSLNTF 322 (695)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH
Confidence 45788888888764
No 154
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=36.97 E-value=2.4e+02 Score=25.97 Aligned_cols=54 Identities=7% Similarity=0.217 Sum_probs=21.2
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 008304 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 545 (570)
Q Consensus 492 sLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle 545 (570)
-|..-...|++.|..--..|.+|.++.+.|+++|.+....++.+..+-......
T Consensus 232 Wl~ek~~~L~~~~~~d~~~~~~ll~~~~~~e~~l~~~~~~v~~l~~~a~~L~~~ 285 (326)
T 3kbt_A 232 LIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTA 285 (326)
T ss_dssp HHHHHHHC---------------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444544444566777777888888888888888887665554443
No 155
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=36.89 E-value=1.4e+02 Score=28.65 Aligned_cols=73 Identities=14% Similarity=0.102 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhH-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008304 478 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN 537 (570)
Q Consensus 478 aLqRaLeks~~laEsLA~ENsALTdryNqQ~-~~v-------------------~qLk~dmErLq~Ei~aQl~~LEs~~~ 537 (570)
.|.++...-..-++.+|..+..|.+..+.+- ..+ ..+...+++++.++..+...|+..+.
T Consensus 85 tl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk 164 (350)
T 3aco_A 85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 164 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSCBCTTSSBHHHHHHHHHHHHHTSHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566667777777766665432 112 34555666677777777777887777
Q ss_pred HHHHHHhhhhhHH
Q 008304 538 EYANVRLECNAAD 550 (570)
Q Consensus 538 ErdaArle~~aA~ 550 (570)
.|+.+-.+...|.
T Consensus 165 ~Y~~~c~e~e~a~ 177 (350)
T 3aco_A 165 AHHAACKEEKLAI 177 (350)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766655554444
No 156
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=36.67 E-value=1.5e+02 Score=23.12 Aligned_cols=64 Identities=9% Similarity=0.158 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE-----NSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~E-----NsALTdryNqQ~~~v~qLk~dmErLq~E 524 (570)
++..|++...++....-.|+..|.+-+..++.|... ..+....|++-...+.++...|+.+.++
T Consensus 9 ~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~ 77 (98)
T 3gwk_C 9 TPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQ 77 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999998888888888643 4455555555555555555444444433
No 157
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=36.67 E-value=1e+02 Score=32.34 Aligned_cols=101 Identities=20% Similarity=0.271 Sum_probs=50.4
Q ss_pred ccchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008304 456 TKHNEDFAALEQ---HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 532 (570)
Q Consensus 456 ~~~~ddFAaLqQ---hIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~L 532 (570)
+.-+.+...|+. .|+.+|.|=+.|.-.|.-+-.=.|.....|..+.-+|.. ...+++++|+.-|..|-..+
T Consensus 34 ~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Sk------kml~~~~~~~~~~~~~~~~i 107 (411)
T 3ghg_C 34 TKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSR------KMLEEIMKYEASILTHDSSI 107 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHH------HHHHHHHHHHHHHHhhHHHH
Confidence 334556666664 444557777777766666544444333444333333332 23344444444444443333
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhc
Q 008304 533 ESFRNEYANVRLECNAADERAKILASEVIGLEEKVRS 569 (570)
Q Consensus 533 Es~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~lq 569 (570)
..|+.-+ +..+.+-+.|-.-|..|+++|.+
T Consensus 108 ~~l~~~~-------~~~~~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 108 RYLQEIY-------NSNNQKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333322 22233446677777777777653
No 158
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=36.59 E-value=1e+02 Score=27.57 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhhhH--------HHHHHHHhhhhhHHHHHHHHH
Q 008304 511 VNQLKSEMEKLQEEIKVQ-LVELESFR--------NEYANVRLECNAADERAKILA 557 (570)
Q Consensus 511 v~qLk~dmErLq~Ei~aQ-l~~LEs~~--------~ErdaArle~~aA~ERak~LA 557 (570)
...|+.++++|+...+-. ..+++..+ +||++|+.+-...+.|.+-|-
T Consensus 11 ~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le 66 (158)
T 1grj_A 11 AEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIE 66 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHH
Confidence 466777777777622211 11222222 788888866666666665553
No 159
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=36.21 E-value=34 Score=32.97 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008304 485 ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (570)
Q Consensus 485 ks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~E 524 (570)
......+.+..+.+++..+.++......+++.++++|+++
T Consensus 138 ~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 138 ACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKE 177 (250)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554444444444444444444433
No 160
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=35.80 E-value=1.1e+02 Score=25.40 Aligned_cols=11 Identities=9% Similarity=0.404 Sum_probs=5.0
Q ss_pred HHHHHhhhHHH
Q 008304 491 ESLAAENSSLT 501 (570)
Q Consensus 491 EsLA~ENsALT 501 (570)
+.|..||..|.
T Consensus 10 ~~l~~e~~~l~ 20 (86)
T 3swk_A 10 DQLTNDKARVE 20 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhHHHHH
Confidence 44444554443
No 161
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=35.72 E-value=1.7e+02 Score=29.96 Aligned_cols=33 Identities=9% Similarity=0.189 Sum_probs=14.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (570)
Q Consensus 499 ALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~ 531 (570)
+|..+-.+-+..+.+|+.++..+++++...++.
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALREKEARLEALLLQ 100 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444433
No 162
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=35.54 E-value=97 Score=27.79 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhhhhH--------HHHHHHHhhhhhHHHHHHHHHH
Q 008304 511 VNQLKSEMEKLQEE-IKVQLVELESFR--------NEYANVRLECNAADERAKILAS 558 (570)
Q Consensus 511 v~qLk~dmErLq~E-i~aQl~~LEs~~--------~ErdaArle~~aA~ERak~LAa 558 (570)
...|+.+++.|... +..-..+++..+ +||++|+.+......|-+-|-.
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~ 67 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTK 67 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777542 221112222222 6777776666555555554443
No 163
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=35.19 E-value=1.2e+02 Score=32.04 Aligned_cols=30 Identities=23% Similarity=0.208 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 008304 512 NQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (570)
Q Consensus 512 ~qLk~dmErLq~Ei~aQl~~LEs~~~Erda 541 (570)
.+|+.++..|.++|+....++..+.+|+..
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444444444444443
No 164
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=35.13 E-value=57 Score=23.48 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 008304 517 EMEKLQEEIKVQLVELESFRNEYANVRLE 545 (570)
Q Consensus 517 dmErLq~Ei~aQl~~LEs~~~ErdaArle 545 (570)
++.-|.+||.+---++.+++-|.++..+.
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 56677777777777777777777766654
No 165
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=35.06 E-value=2.9e+02 Score=25.98 Aligned_cols=13 Identities=38% Similarity=0.537 Sum_probs=7.6
Q ss_pred HHHHhhhhhhhhh
Q 008304 555 ILASEVIGLEEKV 567 (570)
Q Consensus 555 ~LAaEVV~LEEk~ 567 (570)
.+|.||=.|=++.
T Consensus 116 VVA~Evr~La~~t 128 (213)
T 3g67_A 116 IVANEVQNLSNET 128 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3466776665543
No 166
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=34.60 E-value=2e+02 Score=24.49 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRA-----LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~-----laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq 522 (570)
..|+.-|..|-.++..|...++...+ -.+....++=.+--.||+-...--.|=..++.++
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~r 68 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHE 68 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 56889999999999999999988765 2456667777788888888777666655555443
No 167
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=34.44 E-value=2.3e+02 Score=28.27 Aligned_cols=63 Identities=16% Similarity=0.298 Sum_probs=40.4
Q ss_pred HHHHHHhhhHHHHHHHHhH-HHHH-----------HHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHhhhhhHHHH
Q 008304 490 SESLAAENSSLTDSYNQQR-SVVN-----------QLKSEMEKLQEEIKVQL-VELESFRNEYANVRLECNAADER 552 (570)
Q Consensus 490 aEsLA~ENsALTdryNqQ~-~~v~-----------qLk~dmErLq~Ei~aQl-~~LEs~~~ErdaArle~~aA~ER 552 (570)
++.+|..+..+.+.++.+- ..+. .....+++++.++.... .+|+..+..|+.+-.++..|..+
T Consensus 81 te~~a~~H~~lae~L~~~v~~~l~~~~ke~~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k 156 (406)
T 4dyl_A 81 TEGLSRLLRQHAEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRK 156 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666766666665552 2222 33344556777777777 78888888888777777666654
No 168
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=34.34 E-value=2.1e+02 Score=25.29 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRS 482 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRa 482 (570)
+++..++..|+.+...=-.|...
T Consensus 43 ~~v~~I~~~i~~i~~~v~~l~~~ 65 (180)
T 1s94_A 43 EQVEEIRAMIDKISDNVDAVKKK 65 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555443334333
No 169
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=34.34 E-value=1.7e+02 Score=23.95 Aligned_cols=10 Identities=20% Similarity=0.202 Sum_probs=4.6
Q ss_pred hhHHHHHHHH
Q 008304 534 SFRNEYANVR 543 (570)
Q Consensus 534 s~~~ErdaAr 543 (570)
++-.|.+.+|
T Consensus 44 ~Le~EIatYR 53 (74)
T 2xv5_A 44 ALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3345554444
No 170
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=34.32 E-value=42 Score=33.23 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=23.7
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (570)
Q Consensus 492 sLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~a 527 (570)
.|..++..|+.+-......+.++++++++|++||+.
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666677666666666677777777777666543
No 171
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=34.26 E-value=1e+02 Score=30.46 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=10.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 008304 503 SYNQQRSVVNQLKSEMEKLQEEI 525 (570)
Q Consensus 503 ryNqQ~~~v~qLk~dmErLq~Ei 525 (570)
.||.-...+++|+.+.++|++||
T Consensus 179 ~~n~~~~eie~L~~~~~~L~eEi 201 (315)
T 2ve7_A 179 LFNVDAFKLESLEAKNRALNEQI 201 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555443
No 172
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=33.91 E-value=1.1e+02 Score=31.55 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASR 487 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~ 487 (570)
..|+.-+++|.+++-.|+|-+++.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~ 30 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQA 30 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666655555443
No 173
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=33.84 E-value=65 Score=28.40 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008304 509 SVVNQLKSEMEKLQEEIKVQLVELE 533 (570)
Q Consensus 509 ~~v~qLk~dmErLq~Ei~aQl~~LE 533 (570)
..+.+|+..++.|+.|+.=+-..|-
T Consensus 25 ~ei~eLk~~ve~lEkERDFYF~KLR 49 (106)
T 4e61_A 25 EEIEQYKGTVSTLEIEREFYFNKLR 49 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444433
No 174
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.76 E-value=3.6e+02 Score=26.65 Aligned_cols=95 Identities=15% Similarity=0.249 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHH--------
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE---EIKVQLVE-------- 531 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~---Ei~aQl~~-------- 531 (570)
..+...|+.+-.-+...+.+|+..++-++.+-+++-+-.+.=|-+ ..|++++.++|. ++++|..-
T Consensus 355 ~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (471)
T 3mq9_A 355 YAVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVT----HLLQQELTEAQKGFQDVEAQAATANHTVMAL 430 (471)
T ss_dssp HHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHH----HHHHHHHHHHhhhHHHHHHHhhhcchhHHHH
Confidence 356666666665566677778887777777777776665554444 445555555543 23333321
Q ss_pred hhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 008304 532 LESFRNEYANVRLECNAADERAKILASEVIGLEEKVR 568 (570)
Q Consensus 532 LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~l 568 (570)
.++|..|...++ -|.+.|-.||-.|+.++.
T Consensus 431 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 431 MASLDAEKAQGQ-------KKVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 123333333322 377778888877776653
No 175
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=33.64 E-value=1.9e+02 Score=23.30 Aligned_cols=85 Identities=15% Similarity=0.222 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENS--SLTDSY------NQQRSVVNQLKSEMEKLQEEIKVQLV 530 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENs--ALTdry------NqQ~~~v~qLk~dmErLq~Ei~aQl~ 530 (570)
-..|..|++.+..+..++-.|.+.+.....+.+.|..=.+ .+-.-. -....++..|...++.+..+|+.-..
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~ 86 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIER 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999888888887754221 110000 02344555566666666655555555
Q ss_pred HhhhhHHHHHHHH
Q 008304 531 ELESFRNEYANVR 543 (570)
Q Consensus 531 ~LEs~~~ErdaAr 543 (570)
.++.+..+....+
T Consensus 87 ~~~~~~~~l~~lk 99 (107)
T 1fxk_A 87 QEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444443
No 176
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=33.19 E-value=26 Score=33.91 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAE 496 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~E 496 (570)
..++.+++.+..++-.....|+++++.=+....|
T Consensus 130 K~~~~~~~k~qk~~~~~~~~l~kaKk~Y~~~c~e 163 (320)
T 3m3w_A 130 RAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKD 163 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666677777777766666
No 177
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=33.13 E-value=2e+02 Score=23.41 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=20.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008304 457 KHNEDFAALEQHIEDLTQEKFALQRSL 483 (570)
Q Consensus 457 ~~~ddFAaLqQhIeDLT~EKfaLqRaL 483 (570)
+-+.++..|++.|+.|-.+.-.|+-.|
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999998888877666544
No 178
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=33.00 E-value=2.8e+02 Score=26.74 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhH-HH-------------------HHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008304 478 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SV-------------------VNQLKSEMEKLQEEIKVQLVELESFRN 537 (570)
Q Consensus 478 aLqRaLeks~~laEsLA~ENsALTdryNqQ~-~~-------------------v~qLk~dmErLq~Ei~aQl~~LEs~~~ 537 (570)
.|.+++..-..-++.+|..+..|.+++..+- .. ...+...+++++.++..+..+|+..+.
T Consensus 76 sl~~aw~~i~~e~e~~a~~H~~~a~~l~~~v~~~l~~~~k~~~~k~~~~~~ke~K~~~~~~~k~qk~~~~~~~~l~kaKk 155 (320)
T 3m3w_A 76 TLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKK 155 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555567777777777777765431 11 133445667788888888888888888
Q ss_pred HHHHHHhhhhhH
Q 008304 538 EYANVRLECNAA 549 (570)
Q Consensus 538 ErdaArle~~aA 549 (570)
.|..+-.+...|
T Consensus 156 ~Y~~~c~e~~~a 167 (320)
T 3m3w_A 156 SYHTARKDEKTA 167 (320)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887765554433
No 179
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.36 E-value=1.9e+02 Score=24.70 Aligned_cols=36 Identities=33% Similarity=0.461 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304 486 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (570)
Q Consensus 486 s~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq 522 (570)
..+|-+.| .||..|-.+..+....+..||.+.++|+
T Consensus 38 R~AL~eaL-~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 38 RKALYEAL-KENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 5788777765555555555555555554
No 180
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=32.28 E-value=89 Score=26.18 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 008304 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (570)
Q Consensus 492 sLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaA 542 (570)
.|..+++.++.+-=+.-..=..|++.+..|++++..-...-+.++.|...+
T Consensus 3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 3 HMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 181
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=32.24 E-value=32 Score=35.20 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008304 469 IEDLTQEKFALQRSLEASRA 488 (570)
Q Consensus 469 IeDLT~EKfaLqRaLeks~~ 488 (570)
|-+|-+++-+++..++.-++
T Consensus 32 ~~~~~~~~r~~~~~~~~l~~ 51 (425)
T 2dq3_A 32 VLELDKRRREIIKRLEALRS 51 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555444333
No 182
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=30.97 E-value=2.2e+02 Score=24.02 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008304 477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 523 (570)
Q Consensus 477 faLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~ 523 (570)
.|-.|-=++.+.-.+.++.+...|...--+....|.+|+.++..|.+
T Consensus 25 ~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455444444444444444455555555555553
No 183
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=30.82 E-value=96 Score=31.70 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhhhhhhh
Q 008304 550 DERAKILASEVIGLEEK 566 (570)
Q Consensus 550 ~ERak~LAaEVV~LEEk 566 (570)
.++++.|..++-.||++
T Consensus 74 ~~~~~~~~~~~~~~~~~ 90 (425)
T 2dq3_A 74 QNRVKELKEEIDRLEEE 90 (425)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 184
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=30.39 E-value=18 Score=29.60 Aligned_cols=44 Identities=7% Similarity=0.027 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 008304 460 EDFAALEQHIEDL-TQEKFALQRSLEASRALSESLAAENSSLTDS 503 (570)
Q Consensus 460 ddFAaLqQhIeDL-T~EKfaLqRaLeks~~laEsLA~ENsALTdr 503 (570)
+-|.+|..+|=.+ .-+|.+=.--|.+|.+-...|-.++..+...
T Consensus 18 ~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e 62 (80)
T 1nlw_A 18 LSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQ 62 (80)
T ss_dssp HHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555433 2234333445666666666666666555443
No 185
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=30.37 E-value=1.8e+02 Score=22.24 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA 495 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ 495 (570)
=+++.|++...++..-.-.|+..|.+-...++.|..
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~ 44 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTELIARLDQMSHTLQG 44 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468899999999999999999888888888888864
No 186
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=29.87 E-value=47 Score=28.66 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=21.6
Q ss_pred hhhHhHHHhhhHHHHHHHHHHHHHHHh
Q 008304 11 RKQEHLEAGKRKLEEFRKKKAAERAKK 37 (570)
Q Consensus 11 rkqehleagkr~leefrkkkaa~rakk 37 (570)
|+||-++|.++|..|--..||+.-+.|
T Consensus 44 ~RQEAl~aaRlRMQEeldAqAe~~keK 70 (89)
T 2q2f_A 44 KRQEALAAARLKMQEELNAQVEKHKEK 70 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999987766666665544
No 187
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=29.61 E-value=2e+02 Score=22.44 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=22.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008304 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (570)
Q Consensus 499 ALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~ 536 (570)
.|+......+..+...|.++-.|++.|+.-..+|++++
T Consensus 39 el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 39 DLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555555666666666666666666666666554
No 188
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=29.43 E-value=2.3e+02 Score=23.12 Aligned_cols=48 Identities=38% Similarity=0.405 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304 474 QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (570)
Q Consensus 474 ~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~ 535 (570)
+|=+.+-+||..+.+-.++|-.-|..| .+++..||.+|..-+.+...+
T Consensus 13 qeylevK~ALaaSeAkiQQLmkVN~~l--------------s~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 13 QEYLELKKALATSEAKVQQLMKVNSSL--------------SDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHhh--------------hHHHHHHHHHHHHHHhhhhhh
Confidence 455678889999998888887666443 345555555554444444443
No 189
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=29.07 E-value=2e+02 Score=30.92 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=41.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HhHHHHHHHHHHHHHHHHH
Q 008304 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN-QQRSVVNQLKSEMEKLQEE 524 (570)
Q Consensus 456 ~~~~ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryN-qQ~~~v~qLk~dmErLq~E 524 (570)
.++..||+.+.|.+.||..- --+|.+.|+|++.+-.=|.|+.+--. --=+.|.|-.++++..--+
T Consensus 496 nGKngDFSkVgQAlsdLKnS----kvgLsrnQELtqKIdNLNQAVSEAKatgdFsnveQaiddLKnStKd 561 (569)
T 4dvz_A 496 NGKNKDFSKVTQAKSDLENS----VKDVIINQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKE 561 (569)
T ss_dssp TC---CTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHHHH
T ss_pred CCCccCcchhhhhhhHHHhh----hhhhhhhHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhHHH
Confidence 45677999999999999653 34677788999988888888765431 1223455555555544433
No 190
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=28.93 E-value=3.7e+02 Score=25.25 Aligned_cols=30 Identities=10% Similarity=0.099 Sum_probs=11.2
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 008304 535 FRNEYANVRLECNAADERAKILASEVIGLE 564 (570)
Q Consensus 535 ~~~ErdaArle~~aA~ERak~LAaEVV~LE 564 (570)
+..|.++.+.....+..--+.|.--|..||
T Consensus 102 L~~El~~~k~~~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 102 LQEEVKHLKHNLEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 191
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.75 E-value=2.2e+02 Score=25.80 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 008304 517 EMEKLQEEIKVQLVELESFRNEYANVRL 544 (570)
Q Consensus 517 dmErLq~Ei~aQl~~LEs~~~ErdaArl 544 (570)
.++.|+.||+-.--.|....+|..+.|-
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555555554455444444444443
No 192
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.24 E-value=91 Score=32.03 Aligned_cols=31 Identities=19% Similarity=0.117 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008304 475 EKFALQRSLEASRALSESLAAENSSLTDSYN 505 (570)
Q Consensus 475 EKfaLqRaLeks~~laEsLA~ENsALTdryN 505 (570)
|+..|.-.|..-++..+.|-.++..+.....
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~ 34 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELE 34 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333333
No 193
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.24 E-value=2.1e+02 Score=23.27 Aligned_cols=55 Identities=22% Similarity=0.325 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 477 FALQRSLEASRALSESLAAENSSLTDSYNQ------QRSVVNQLKSEMEKLQEEIKVQLVE 531 (570)
Q Consensus 477 faLqRaLeks~~laEsLA~ENsALTdryNq------Q~~~v~qLk~dmErLq~Ei~aQl~~ 531 (570)
|..||.|++--+-.+.|..+-.+|....+. -...+.+|..+++.++.++..-...
T Consensus 18 ykeqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 18 YKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777666543 2456777777777777776655443
No 194
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=27.99 E-value=2.2e+02 Score=27.41 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=11.0
Q ss_pred HHHHHhhh-hhHHHHHHHHHHhh
Q 008304 539 YANVRLEC-NAADERAKILASEV 560 (570)
Q Consensus 539 rdaArle~-~aA~ERak~LAaEV 560 (570)
+.++++++ ....||-..++.||
T Consensus 129 kEn~al~lEa~yre~~~~v~~Ev 151 (214)
T 2cly_A 129 RNNIAMALEVTYRERLHRVYREV 151 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 23455556666665
No 195
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.88 E-value=2.4e+02 Score=22.85 Aligned_cols=10 Identities=30% Similarity=0.129 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 008304 521 LQEEIKVQLV 530 (570)
Q Consensus 521 Lq~Ei~aQl~ 530 (570)
|.-||..++-
T Consensus 66 Ld~EIatYRk 75 (84)
T 1gk4_A 66 LDIEIATYRK 75 (84)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3444444443
No 196
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=27.83 E-value=3.8e+02 Score=24.99 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=20.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008304 457 KHNEDFAALEQHIEDLTQEKFALQRSL 483 (570)
Q Consensus 457 ~~~ddFAaLqQhIeDLT~EKfaLqRaL 483 (570)
.+++.+|-|++-+++|..|--.-|-.|
T Consensus 8 ~K~~~ia~L~~D~~s~~~eleEnqeEL 34 (167)
T 4gkw_A 8 DKEDEVADLKQDTESLQKQLEENQEEL 34 (167)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999998887765554444
No 197
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=27.67 E-value=6.4e+02 Score=27.62 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHH
Q 008304 518 MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555 (570)
Q Consensus 518 mErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~ 555 (570)
+.+-+.++..-.+.+.+++.|+++|.-+...|+|+=|-
T Consensus 397 ~~~~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~Rkq 434 (551)
T 2b5u_A 397 AQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKK 434 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 34446667777778888888888888888888887554
No 198
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=27.37 E-value=81 Score=31.13 Aligned_cols=37 Identities=11% Similarity=0.039 Sum_probs=20.5
Q ss_pred HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008304 493 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 493 LA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl 529 (570)
|++.+......-+.......+|++++++|+.++....
T Consensus 176 ~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~ 212 (315)
T 2ve7_A 176 LKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTAN 212 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444555556666666677777765554433
No 199
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=27.21 E-value=3.9e+02 Score=25.66 Aligned_cols=73 Identities=16% Similarity=0.080 Sum_probs=48.5
Q ss_pred HHHHhhhHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhh
Q 008304 492 SLAAENSSLTDSYNQQRSVV-NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 565 (570)
Q Consensus 492 sLA~ENsALTdryNqQ~~~v-~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEE 565 (570)
..+..|.++...+-..-..+ .+++++|+++.+.|+. ...++.+=.|..+.|....+-.+..+.--.|.|+=+=
T Consensus 247 r~a~s~p~~~~d~~~~~~~~~~~~~~~l~~~~~~i~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~g~~~ 320 (338)
T 1np3_A 247 NYSISNNAEYGEYVTGPEVINAESRAAMRNALKRIQD-GEYAKMFITEGAANYPSMTAYRRNNAAHPIEQIGEKL 320 (338)
T ss_dssp HHHSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT-THHHHHHHHHHHTTSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHhcCCHHHHhhhhcCCccccHHHHHHHHHHHHHHhC-CHHHHHHHHHHhcccHHHHHHHHHHhCCcHHHHHHHH
Confidence 56677888877754443355 7788889999988887 4455555566666666666655555555566666443
No 200
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=27.13 E-value=51 Score=31.80 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=24.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 008304 501 TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 546 (570)
Q Consensus 501 TdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~ 546 (570)
+..|++--...+++..++++|++|++.-...|+.++.|++....+.
T Consensus 140 ~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~ 185 (250)
T 2ve7_C 140 RETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVT 185 (250)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3456666666777788888888888888888888888888766443
No 201
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.89 E-value=90 Score=24.39 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=12.3
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHH
Q 008304 492 SLAAENSSLTDSYNQQRSVVNQLKSEM 518 (570)
Q Consensus 492 sLA~ENsALTdryNqQ~~~v~qLk~dm 518 (570)
.|..+|..|..+.+.....+..|+..|
T Consensus 34 ~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 34 ELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 202
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=26.85 E-value=3.1e+02 Score=23.76 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 469 IEDLTQEKFALQRSLEASRALSESLAA 495 (570)
Q Consensus 469 IeDLT~EKfaLqRaLeks~~laEsLA~ 495 (570)
|++|+.-=-.-..+|..-+...+.|-.
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke 30 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKE 30 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444544444444455444444444433
No 203
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=26.78 E-value=3e+02 Score=23.59 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008304 462 FAALEQHIEDLTQEKFAL 479 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaL 479 (570)
.+.|++..+=|.+|+-+|
T Consensus 17 ~~~l~~L~~lL~~E~~~L 34 (154)
T 3opc_A 17 NALVVEFLHALEAETEAL 34 (154)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 204
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=26.69 E-value=4e+02 Score=24.95 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH
Q 008304 483 LEASRALSESLAAENSSLTDSY 504 (570)
Q Consensus 483 Leks~~laEsLA~ENsALTdry 504 (570)
|+..++-++.+-.+-..|-..|
T Consensus 88 Le~~r~~l~~~l~~~~~L~~~~ 109 (192)
T 2p22_C 88 LHEQKDKVQALLENARILESKY 109 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333343333
No 205
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=26.30 E-value=93 Score=25.31 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 008304 510 VVNQLKSEMEKLQEEI 525 (570)
Q Consensus 510 ~v~qLk~dmErLq~Ei 525 (570)
....|+.+++.|+.|+
T Consensus 51 en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 51 ENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555443
No 206
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=26.19 E-value=2e+02 Score=21.38 Aligned_cols=19 Identities=11% Similarity=0.036 Sum_probs=6.9
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 008304 504 YNQQRSVVNQLKSEMEKLQ 522 (570)
Q Consensus 504 yNqQ~~~v~qLk~dmErLq 522 (570)
++.....+..+++.++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~k 32 (60)
T 3htk_A 14 VEELTEKCSLKTDEFLKAK 32 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 207
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=26.15 E-value=3.5e+02 Score=24.07 Aligned_cols=18 Identities=6% Similarity=0.244 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 008304 517 EMEKLQEEIKVQLVELES 534 (570)
Q Consensus 517 dmErLq~Ei~aQl~~LEs 534 (570)
.|.-|++++.++..+-++
T Consensus 63 ~I~vLkaQv~IY~~DF~a 80 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQA 80 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 455566666666544333
No 208
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=26.13 E-value=1.3e+02 Score=28.09 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=9.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH
Q 008304 537 NEYANVRLECNAADERAKILAS 558 (570)
Q Consensus 537 ~ErdaArle~~aA~ERak~LAa 558 (570)
+|++|.|-+...-.+.++..|.
T Consensus 67 Ae~eN~rkR~~ke~~~~~~~a~ 88 (197)
T 1dkg_A 67 AEMENLRRRTELDIEKAHKFAL 88 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443344433333
No 209
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=25.92 E-value=2.2e+02 Score=21.70 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE-----NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~E-----NsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs 534 (570)
-++..|+++..++....-.|+..|.+-+..++.|... ..+....|++ ++..+.++.+-+..-...|..
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~-------~~~~~~~~~~~L~~i~~~L~~ 78 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQ-------LSPKVEKFAQLLEEIKQQLNS 78 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999998888888888888642 3444444444 444444444333333344555
Q ss_pred hHHHHHHH
Q 008304 535 FRNEYANV 542 (570)
Q Consensus 535 ~~~ErdaA 542 (570)
....|..+
T Consensus 79 ~a~~y~~~ 86 (97)
T 2vs0_A 79 TADAVQEQ 86 (97)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 55444443
No 210
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=25.88 E-value=3.9e+02 Score=24.53 Aligned_cols=59 Identities=10% Similarity=0.226 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (570)
Q Consensus 464 aLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq 522 (570)
.|.+.+++|..-.-.+-..+..-...++.|+..-..+.....+....+.++...++++-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 71 (309)
T 2ch7_A 13 SVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEISSATKNIA 71 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444444444444444444444444444444444444444444444443
No 211
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=25.44 E-value=80 Score=27.27 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=18.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008304 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (570)
Q Consensus 499 ALTdryNqQ~~~v~qLk~dmErLq~Ei~a 527 (570)
++.++|-+....+.+|+..+++|+.|+..
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666667777777777766543
No 212
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=25.40 E-value=76 Score=22.04 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=11.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 008304 506 QQRSVVNQLKSEMEKLQEEIK 526 (570)
Q Consensus 506 qQ~~~v~qLk~dmErLq~Ei~ 526 (570)
|....|++||.++.-|..|++
T Consensus 4 qlkdevgelkgevralkdevk 24 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHh
Confidence 344556666666666665543
No 213
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.37 E-value=1.5e+02 Score=22.98 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=15.7
Q ss_pred HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008304 493 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (570)
Q Consensus 493 LA~ENsALTdryNqQ~~~v~qLk~dmErLq~E 524 (570)
|..++..|+.+.=.....+.+-+.+|+.|.+|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444444444444444444444
No 214
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=25.14 E-value=1.8e+02 Score=28.21 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHh
Q 008304 508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 559 (570)
Q Consensus 508 ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LAaE 559 (570)
+..++++|.++..|++.++--+.+..+..+-....|+.+..+.|.--.+.-|
T Consensus 170 a~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T 3q0x_A 170 AFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLE 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 3445555555555555555555555555555555555555555544444433
No 215
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=25.03 E-value=3.5e+02 Score=23.74 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHH
Q 008304 471 DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ---QRSVVNQLKSEMEKLQEEIKVQL 529 (570)
Q Consensus 471 DLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNq---Q~~~v~qLk~dmErLq~Ei~aQl 529 (570)
.||+---.|.++-+++---.+++..=+.+|...-=+ |-..|.+|+.+|+.|.++++-..
T Consensus 26 qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 26 QLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578877888888877777777777777777655333 23468888888888887765443
No 216
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=24.75 E-value=3.5e+02 Score=23.66 Aligned_cols=71 Identities=14% Similarity=0.248 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008304 468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (570)
Q Consensus 468 hIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~Er 539 (570)
.+.-|-.|+..++..++.+.+-.+.+-+++-. --...+|..++.+-+.=+-.+++-|.....+|+.|=.|+
T Consensus 16 ~vkRL~KE~~~Y~kE~~~q~~kiekmk~e~~d-ey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~~ 86 (116)
T 3mxz_A 16 TCKRIVKELHSYEKEVEREAAKTADMKDKGAD-PYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAEL 86 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 56788899999999999999999999876421 245678888888877777777777777777777766543
No 217
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=24.68 E-value=1.4e+02 Score=25.13 Aligned_cols=76 Identities=20% Similarity=0.363 Sum_probs=39.5
Q ss_pred hhhHHHHHHH----HHHHH----HHHHH----HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQH----IEDLT----QEKFA----LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (570)
Q Consensus 459 ~ddFAaLqQh----IeDLT----~EKfa----LqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~ 526 (570)
..||..|..- |..+. ++|-+ .+++|+.+.+|.+++--|-..+- -+... .|..-|+
T Consensus 11 E~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p--~~~R~-----------~~~~klr 77 (102)
T 1vcs_A 11 EQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIP--PQSRG-----------MYSNRMR 77 (102)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC--TTTHH-----------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--HHhHH-----------HHHHHHH
Confidence 4566665543 33333 34433 34566677777777666655542 11111 2333344
Q ss_pred HHHHHhhhhHHHHHHHHhhhh
Q 008304 527 VQLVELESFRNEYANVRLECN 547 (570)
Q Consensus 527 aQl~~LEs~~~ErdaArle~~ 547 (570)
.+..+|+.++.|+..++..|.
T Consensus 78 ~Yk~dL~~lk~elk~~~~~~~ 98 (102)
T 1vcs_A 78 SYKQEMGKLETDFKRSRIASG 98 (102)
T ss_dssp HHHHHHHHHHHHTHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 444555666667666666643
No 218
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=24.61 E-value=2.4e+02 Score=25.87 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHhhhhhHHHHHH
Q 008304 482 SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV-------ELESFRNEYANVRLECNAADERAK 554 (570)
Q Consensus 482 aLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~-------~LEs~~~ErdaArle~~aA~ERak 554 (570)
.|+.|++|...++.+-+.=++++=++...+..++..++-|.+=+...-- ..|-+ .-.-..|..+..|-.
T Consensus 33 DL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell----~eL~~~Ck~~qp~i~ 108 (158)
T 1naf_A 33 DLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLM----KELYQRCERMRPTLF 108 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHH----HHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHH----HHHHHHHHHHHHHHH
Confidence 4788999999999888777888888888888888888777655443210 22222 234457888999999
Q ss_pred HHHHhhh
Q 008304 555 ILASEVI 561 (570)
Q Consensus 555 ~LAaEVV 561 (570)
.|+.|+.
T Consensus 109 ~Li~e~~ 115 (158)
T 1naf_A 109 RLASDTE 115 (158)
T ss_dssp HHHHHCC
T ss_pred HHHHHcc
Confidence 9998865
No 219
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=23.87 E-value=5.1e+02 Score=25.40 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHhhhhhHHHHHHHHH
Q 008304 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE--YANVRLECNAADERAKILA 557 (570)
Q Consensus 483 Leks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~E--rdaArle~~aA~ERak~LA 557 (570)
|+..|+--+.|.++-..|..+ .-+...+..|+.+|-+.+.|..+-...|..++-+ +.+..+.+.+-.||+.-++
T Consensus 106 vqp~R~~R~~l~~~I~kLk~k-~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~ 181 (234)
T 3plt_A 106 VQPSRDRKEKITDEIAHLKYK-DPQSTKIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLRELSEKFA 181 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcc-CCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555433 3455678889999988888888888888888744 5677888888889887665
No 220
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=23.52 E-value=6.8e+02 Score=27.06 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 008304 467 QHIEDLTQEKFALQR 481 (570)
Q Consensus 467 QhIeDLT~EKfaLqR 481 (570)
.-|++|+...+.|+|
T Consensus 65 ~rI~kLkn~L~~~s~ 79 (491)
T 1m1j_A 65 QRIDNIRQQLADSQN 79 (491)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 356666665555544
No 221
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=23.36 E-value=75 Score=32.98 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 461 DFAALEQHIEDLTQEKFALQRSLEASRAL 489 (570)
Q Consensus 461 dFAaLqQhIeDLT~EKfaLqRaLeks~~l 489 (570)
|.=.+++||++..+||..|-+.|+.++.-
T Consensus 10 DLl~id~~I~~i~~eRd~La~~lq~~~~~ 38 (355)
T 3etv_A 10 DLLNINDRIKQVQNERNELASKLQNLKQS 38 (355)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44457899999999999999999988853
No 222
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.26 E-value=1.7e+02 Score=22.71 Aligned_cols=45 Identities=22% Similarity=0.485 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008304 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528 (570)
Q Consensus 463 AaLqQhIeDLT~EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQ 528 (570)
|-|.+.|-.|....+.|.|.-+. ....+..|++++.+|++|++.+
T Consensus 6 aylrkkiarlkkdnlqlerdeqn---------------------lekiianlrdeiarlenevash 50 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQN---------------------LEKIIANLRDEIARLENEVASH 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhhhhhhhhhhHhh---------------------HHHHHHHHHHHHHHHHHHHhhc
Confidence 45666666666666665554322 2235667888888888886543
No 223
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.24 E-value=1.8e+02 Score=23.65 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008304 496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (570)
Q Consensus 496 ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~ 536 (570)
+-..+..+|++....+..|..++.+|+.++.-...+++.|.
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678888888899999999999888888777777665
No 224
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=23.20 E-value=1.8e+02 Score=25.97 Aligned_cols=60 Identities=12% Similarity=0.235 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008304 459 NEDFAALEQHIEDLTQ-EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~-EKfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~E 524 (570)
.+.+.+|++.++.|-. ++-.+..+++.++++-+- .||. .|-+.+.....+...+..|+.+
T Consensus 8 ~~g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDl--sENa----eY~aak~~q~~~e~ri~~Le~~ 68 (158)
T 1grj_A 8 LRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDL--KENA----EYHAAREQQGFCEGRIKDIEAK 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCG--GGCH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhHhhHHHHHhcccc--cccc----hhhhHHHHHHHHHHHHHHHHHH
Confidence 6789999999999976 677777776665543211 2442 3444444445555555555544
No 225
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=23.10 E-value=2.6e+02 Score=23.08 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 008304 477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (570)
Q Consensus 477 faLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq 522 (570)
.|-.|-=++.+.-.+.++.+...|...--+....|.+|+.++..|.
T Consensus 25 ~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555554444444444444444555555555554
No 226
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.01 E-value=4.2e+02 Score=28.04 Aligned_cols=19 Identities=21% Similarity=-0.006 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008304 470 EDLTQEKFALQRSLEASRA 488 (570)
Q Consensus 470 eDLT~EKfaLqRaLeks~~ 488 (570)
-+|.+++-+++..++.-++
T Consensus 40 ~~ld~~~r~~~~~~~~l~~ 58 (484)
T 3lss_A 40 IEADKKWRRTQFLTEASKK 58 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544443
No 227
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.89 E-value=2.7e+02 Score=23.41 Aligned_cols=6 Identities=33% Similarity=0.528 Sum_probs=2.2
Q ss_pred hhhHHH
Q 008304 533 ESFRNE 538 (570)
Q Consensus 533 Es~~~E 538 (570)
+.++.|
T Consensus 60 ~~L~~E 65 (87)
T 1hjb_A 60 EQLSRE 65 (87)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 228
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.61 E-value=2.2e+02 Score=29.00 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008304 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESL 493 (570)
Q Consensus 460 ddFAaLqQhIeDLT~EKfaLqRaLeks~~laEsL 493 (570)
.+..+|++.|+.|.+|+-.|++.+++.++-.+.|
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 36 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKEL 36 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999888888777665544444
No 229
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=22.59 E-value=2.2e+02 Score=25.18 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=11.1
Q ss_pred HHHHHHHhhhhhHHHHHHHH
Q 008304 537 NEYANVRLECNAADERAKIL 556 (570)
Q Consensus 537 ~ErdaArle~~aA~ERak~L 556 (570)
+||++|+.+.....-|.+-|
T Consensus 46 aey~aak~~q~~~e~ri~~L 65 (156)
T 2f23_A 46 SGLEAAKQEKARIEARIDSL 65 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45666666655555554444
No 230
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=22.37 E-value=2.5e+02 Score=26.30 Aligned_cols=75 Identities=13% Similarity=0.214 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHhhhhhHHHHHHH
Q 008304 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV-------ELESFRNEYANVRLECNAADERAKI 555 (570)
Q Consensus 483 Leks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei~aQl~-------~LEs~~~ErdaArle~~aA~ERak~ 555 (570)
|+.|++|+..++.+-+.=++++=++...+..++..++-|.+=+...-- ..|-+ .-.-..|..+..|-..
T Consensus 50 L~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell----~eL~~~Ck~~qp~i~~ 125 (186)
T 1oxz_A 50 LRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLM----KELYQRCERMRPTLFR 125 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHH----HHHHHHHHHHHHHHHH
Confidence 566777777777766666666666666666666666666544332100 11222 2234467777777777
Q ss_pred HHHhhh
Q 008304 556 LASEVI 561 (570)
Q Consensus 556 LAaEVV 561 (570)
|+.|+.
T Consensus 126 Li~e~~ 131 (186)
T 1oxz_A 126 LASDTE 131 (186)
T ss_dssp HHHHCC
T ss_pred HHHHcc
Confidence 777654
No 231
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.17 E-value=3.2e+02 Score=22.26 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 008304 465 LEQHIEDLTQE 475 (570)
Q Consensus 465 LqQhIeDLT~E 475 (570)
++..++++..+
T Consensus 8 ~~~~~~~~~~~ 18 (112)
T 1l8d_A 8 LETKKTTIEEE 18 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 232
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.97 E-value=5.1e+02 Score=24.53 Aligned_cols=102 Identities=23% Similarity=0.176 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh-------hhHHHHHHHHhHHHHHHHHHHHHHHHHH---
Q 008304 459 NEDFAALEQHIEDLTQEKFALQRSLE----ASRALSESLAAE-------NSSLTDSYNQQRSVVNQLKSEMEKLQEE--- 524 (570)
Q Consensus 459 ~ddFAaLqQhIeDLT~EKfaLqRaLe----ks~~laEsLA~E-------NsALTdryNqQ~~~v~qLk~dmErLq~E--- 524 (570)
.++.+-.....+++.++-..|+..|. -+++|=..|-.| |..|..+.++.+..+..+|.++++.+.|
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~ 88 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK 88 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444444444444444443 455554444444 4455566666666666666666666666
Q ss_pred -HHHHHHHhhhhHHHHHHHHhhh------hhHHHHHHHHHHhh
Q 008304 525 -IKVQLVELESFRNEYANVRLEC------NAADERAKILASEV 560 (570)
Q Consensus 525 -i~aQl~~LEs~~~ErdaArle~------~aA~ERak~LAaEV 560 (570)
|-.-.-++..++.+++..+..+ |+--||+.+.....
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~S 131 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMS 131 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 3333344455666666655554 55566665555443
No 233
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=21.89 E-value=4.5e+02 Score=23.82 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHH
Q 008304 476 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 518 (570)
Q Consensus 476 KfaLqRaLeks~~laEsLA~ENsALTdryNqQ~~~v~qLk~dm 518 (570)
+-.|.+.|......-+.+-+|....-+.|.+....|.+++.++
T Consensus 98 R~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL 140 (152)
T 4fla_A 98 RRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKEL 140 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444433
No 234
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=21.58 E-value=2e+02 Score=26.29 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=12.7
Q ss_pred HHhhhhHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhc
Q 008304 530 VELESFRNEYANVRLECNAADERAKILASEVIGLEEKVRS 569 (570)
Q Consensus 530 ~~LEs~~~ErdaArle~~aA~ERak~LAaEVV~LEEk~lq 569 (570)
++-..+=.|||++.-..-.-.||.+.+ .||+=+-+
T Consensus 90 ~AY~~LfqeYd~~lK~~~~~~e~~~~~-----ql~dL~qq 124 (130)
T 3cl3_D 90 VAYHQLFQEYDNHIKSSVVGSERKRGM-----QLEDLKQQ 124 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccc-----hHHHHHHH
Confidence 344445578888766666677777773 56654433
No 235
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=21.40 E-value=2.8e+02 Score=24.49 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=22.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhHHHHHHHHhh
Q 008304 500 LTDSYNQQRSVVNQLKSEMEKLQE-------EIKVQLVELESFRNEYANVRLE 545 (570)
Q Consensus 500 LTdryNqQ~~~v~qLk~dmErLq~-------Ei~aQl~~LEs~~~ErdaArle 545 (570)
|.+.|=+.-..++.|.++..+|++ .|++...+|+.|++|-...+++
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555554 3444444555555555544443
No 236
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.39 E-value=1.4e+02 Score=22.83 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 008304 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 546 (570)
Q Consensus 510 ~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~ 546 (570)
.|..|+.++.+|+.++.++-.....+..|.|.+-.+.
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~el 49 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDM 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888887765543
No 237
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=21.20 E-value=1.3e+02 Score=22.27 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008304 511 VNQLKSEMEKLQEEIKVQLVELESFRN 537 (570)
Q Consensus 511 v~qLk~dmErLq~Ei~aQl~~LEs~~~ 537 (570)
|+||++++|.|-.+...-..+++.++.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
No 238
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=21.13 E-value=2.6e+02 Score=23.23 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHhhhhhHHHHHHHHHHh
Q 008304 512 NQLKSEMEKLQEEIKVQLVELESFR----NEYANVRLECNAADERAKILASE 559 (570)
Q Consensus 512 ~qLk~dmErLq~Ei~aQl~~LEs~~----~ErdaArle~~aA~ERak~LAaE 559 (570)
.+|++-|++--+.++..--+|..++ .||+=....+.+|.++..+|..|
T Consensus 18 ~~LreAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~~L~~E 69 (70)
T 3brv_B 18 QELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcC
No 239
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.88 E-value=2.9e+02 Score=21.25 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=25.5
Q ss_pred HHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008304 490 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 525 (570)
Q Consensus 490 aEsLA~ENsALTdryNqQ~~~v~qLk~dmErLq~Ei 525 (570)
+-+|..||+.|..+-=-....+.-|..++..|+..|
T Consensus 12 vaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 12 VASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 457788888887776666677777777777776544
No 240
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=20.86 E-value=4e+02 Score=22.84 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH
Q 008304 481 RSLEASRALSESLAAENSSLTD 502 (570)
Q Consensus 481 RaLeks~~laEsLA~ENsALTd 502 (570)
+.++.-++|.+-|..|-.+|+.
T Consensus 15 ~~~~~l~~L~~lL~~E~~~L~~ 36 (154)
T 3opc_A 15 RENALVVEFLHALEAETEALMD 36 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666777777777765
No 241
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=20.85 E-value=3.3e+02 Score=21.83 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHH
Q 008304 507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA 557 (570)
Q Consensus 507 Q~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~LA 557 (570)
-...|..||.-=..+-.||..|-.-|+.+....|.+......+..|.+.+.
T Consensus 24 L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~ 74 (82)
T 2nps_D 24 VSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVS 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666677777888888888888888888888888888877764
No 242
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=20.83 E-value=4.9e+02 Score=23.88 Aligned_cols=40 Identities=15% Similarity=0.333 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhh
Q 008304 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 548 (570)
Q Consensus 509 ~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~a 548 (570)
-.|..|+.++.+|+.++...-.....+..|.|.+-.+.+.
T Consensus 98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~ 137 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555555555555555544444433
No 243
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=20.70 E-value=2.9e+02 Score=24.80 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhhh
Q 008304 549 ADERAKILASEVIGL 563 (570)
Q Consensus 549 A~ERak~LAaEVV~L 563 (570)
..+.+|++|-++|..
T Consensus 52 ~~~~aki~Ak~lvr~ 66 (179)
T 2gd5_A 52 QKDVCIVLAKEMIRS 66 (179)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 445678888887754
No 244
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.40 E-value=1.4e+02 Score=23.03 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008304 509 SVVNQLKSEMEKLQEEIKVQLVELESF 535 (570)
Q Consensus 509 ~~v~qLk~dmErLq~Ei~aQl~~LEs~ 535 (570)
..+.+|+.+++.|+.++..-...++.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444443333333
No 245
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=20.37 E-value=69 Score=23.18 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 008304 509 SVVNQLKSEMEKLQEE 524 (570)
Q Consensus 509 ~~v~qLk~dmErLq~E 524 (570)
..|.+||++|..|+.+
T Consensus 4 ~~i~avKkKiq~lq~q 19 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQ 19 (37)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4567888888888855
No 246
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=20.20 E-value=5.4e+02 Score=28.18 Aligned_cols=18 Identities=6% Similarity=0.064 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008304 462 FAALEQHIEDLTQEKFAL 479 (570)
Q Consensus 462 FAaLqQhIeDLT~EKfaL 479 (570)
-+.|.|-+|+-.+-|-..
T Consensus 293 ~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 293 PDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345666666655444333
No 247
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=20.17 E-value=2.9e+02 Score=21.01 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 008304 508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (570)
Q Consensus 508 ~~~v~qLk~dmErLq~Ei~aQl~~LEs~~~ErdaArle~~aA~ERak~L 556 (570)
...|..||.-=..+-.||..|-.-|+.+....|.+......+..|.+.|
T Consensus 15 ~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 15 SSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555556666666666777666666666666666665543
Done!