BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008305
(570 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 116/271 (42%), Gaps = 61/271 (22%)
Query: 268 VKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEH--FEFTVEDA 325
V ++QA EL D+ G SDP+V +F+ P + + +K LNP++NE F+ +
Sbjct: 23 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 82
Query: 326 STQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGXXXXXXXXXXXXXXXQRDTKNRGQV 385
+ + L + V+ D +IIG
Sbjct: 83 AGKTLVMAVY-DFDRFSKHDIIG------------------------------------- 104
Query: 386 HLELLYCPFGTESSLKNPFNS-DYSLTTLEKSLKSETSRAEAAELGKIATQKKSDVIVRG 444
K P N+ D+ T E + E +LG I + V G
Sbjct: 105 -------------EFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRY-VPTAG 150
Query: 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVV 501
L++ ++ A+NL K+D+ G +DP+V + L + G + KT + +TLNP +N++F F V
Sbjct: 151 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 210
Query: 502 --EDGQHEMLILDVYDHDTFGK-DKMGKCIM 529
E Q +++ V D+D GK D +GK +
Sbjct: 211 PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 241
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 446 LSITVIAAENLPKVDLIGKADPFV-VLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG 504
L + +I A LP +D+ G +DP+V V L + +T+V TLNPV+N+ F F V
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 505 Q--HEMLILDVYDHDTFGK 521
+ + L++ VYD D F K
Sbjct: 81 ELAGKTLVMAVYDFDRFSK 99
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFV--RPLRDRMKTSKTINNELNPIWNEHFEF 320
G L V +++AK L D+ G SDP+V I + R + K + N LNP +NE F F
Sbjct: 149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 208
Query: 321 TVEDASTQHLTVRV 334
V Q + V V
Sbjct: 209 EVPFEQIQKVQVVV 222
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 433 ATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPV 492
++ DV G+L + V+ A +L D GK+DPF +L+L +R +T + LNP
Sbjct: 2 SSGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLEL--GNDRLQTHTVYKNLNPE 59
Query: 493 WNQTFDFVVEDGQHEMLILDVYDHD 517
WN+ F F ++D H++L + V+D D
Sbjct: 60 WNKVFTFPIKD-IHDVLEVTVFDED 83
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHF 318
++K G L VK+++A +L D GKSDPF ++ + DR++T T+ LNP WN+ F
Sbjct: 8 DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELG--NDRLQTH-TVYKNLNPEWNKVF 64
Query: 319 EFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
F ++D L V VFD++G P+ +G I L + G
Sbjct: 65 TFPIKDIHDV-LEVTVFDEDGDK-PPDFLGKVAIPLLSIRDG 104
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTR---VAHDTLNPVWNQT--FD 498
G+L++T+I A NL +DL G +DP+V L G R K R + +TLNP +N+ FD
Sbjct: 153 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 212
Query: 499 FVVEDGQHEMLILDVYDHDTFGKDK-MGKC 527
E ++ L + V D+D G ++ +G C
Sbjct: 213 VAPESVENVGLSIAVVDYDCIGHNEVIGVC 242
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA 325
L V+++QA +L KD G SDP+V I++ P R + +K LNPI+NE F+F+V A
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 326 STQ----HLTVRVFD 336
H +V FD
Sbjct: 83 ELAQRKLHFSVYDFD 97
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 446 LSITVIAAENLPKVDLIGKADPFV-VLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG 504
L + ++ A +LP D G +DP+V + L + +T+V TLNP++N+TF F V
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 505 Q--HEMLILDVYDHDTFGK-DKMGKCIM 529
+ L VYD D F + D +G+ ++
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIGQVVL 110
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 254 DYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTI--NNELN 311
++S L G L V +++A L DL G SDP+V + R+K KT N LN
Sbjct: 143 NFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN 202
Query: 312 PIWNEHFEFTVEDASTQH--LTVRVFDDEGPMLAPEIIGIAQIALKELEP 359
P +NE F V S ++ L++ V D + + E+IG+ ++ + +P
Sbjct: 203 PTYNEALVFDVAPESVENVGLSIAVVDYDC-IGHNEVIGVCRVGPEAADP 251
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTR---VAHDTLNPVWNQT--FD 498
G+L++T+I A NL +DL G +DP+V L G R K R + +TLNP +N+ FD
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211
Query: 499 FVVEDGQHEMLILDVYDHDTFGKDK-MGKC 527
E ++ L + V D+D G ++ +G C
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVC 241
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA 325
L V+++QA +L KD G SDP+V I++ P R + +K LNPI+NE F+F+V A
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 326 STQ----HLTVRVFD 336
H +V FD
Sbjct: 82 ELAQRKLHFSVYDFD 96
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 446 LSITVIAAENLPKVDLIGKADPFV-VLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG 504
L + ++ A +LP D G +DP+V + L + +T+V TLNP++N+TF F V
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 505 Q--HEMLILDVYDHDTFGK-DKMGKCIM 529
+ L VYD D F + D +G+ ++
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIGQVVL 109
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 254 DYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTI--NNELN 311
++S L G L V +++A L DL G SDP+V + R+K KT N LN
Sbjct: 142 NFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN 201
Query: 312 PIWNEHFEFTVEDASTQH--LTVRVFDDEGPMLAPEIIGIAQIALKELEP 359
P +NE F V S ++ L++ V D + + E+IG+ ++ + +P
Sbjct: 202 PTYNEALVFDVAPESVENVGLSIAVVDYDC-IGHNEVIGVCRVGPEAADP 250
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDF--- 499
L T+I A+ L +D G ADP+V L L N+ +T+ +T NPVWN+T +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 500 VVEDGQHEMLILDVYDHDTFGKDK 523
ED Q + L + V D D FG ++
Sbjct: 91 TEEDMQRKTLRISVCDEDKFGHNE 114
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRP---LRDRMKTSKTINNELNPIWNEHFEF- 320
L +++AK L D G +DP+V + + P ++++T KT+ N NP+WNE ++
Sbjct: 30 NLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRT-KTLRNTRNPVWNETLQYH 88
Query: 321 --TVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELE 358
T ED + L + V DE E IG + +LK+L+
Sbjct: 89 GITEEDMQRKTLRISVC-DEDKFGHNEFIGETRFSLKKLK 127
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 444 GVLSITVIAAENLPKVDLIGKADPFV-VLQLKKAGNRAKTRVAHDTLNPVWNQTF---DF 499
L++ ++ A+ LP D G +DPFV + L ++ +T+V LNP WN+TF F
Sbjct: 26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85
Query: 500 VVEDGQHEMLILDVYDHDTFGK-DKMGKCIMTLTRV 534
E +L L V D+D F + D +G+ + L +V
Sbjct: 86 PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEF 320
TL VK+++A+EL KD G SDPFV I++ P + +K LNP WNE F F
Sbjct: 26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 82
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDF--- 499
L T+I A+ L +D G ADP+V L L N+ +T+ +T NPVWN+T +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 500 VVEDGQHEMLILDVYDHDTFGKDK 523
ED Q + L + V D D FG ++
Sbjct: 89 TEEDMQRKTLRISVCDEDKFGHNE 112
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRP---LRDRMKTSKTINNELNPIWNEHFEF 320
L +++AK L D G +DP+V + + P ++++T KT+ N NP+WNE ++
Sbjct: 27 SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRT-KTLRNTRNPVWNETLQY 85
Query: 321 ---TVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
T ED + L + V DE E IG + +LK+L+
Sbjct: 86 HGITEEDMQRKTLRISVC-DEDKFGHNEFIGETRFSLKKLKAN 127
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 414 EKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQL 473
E+ + +E + E A + +QK S + G L + VI A L GK++P+ + +
Sbjct: 362 EQYIDTEKKQREKAYQAR--SQKTSGI---GRLMVHVIEATELKACKPNGKSNPYCEISM 416
Query: 474 KKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDK-MGKCIMTLT 532
TR DTLNP WN F ++D ++L L ++D D F D +G+ + +
Sbjct: 417 --GSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVA 474
Query: 533 RVMMEGE 539
++ E E
Sbjct: 475 KIRTEQE 481
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVE 323
G L V +++A EL GKS+P+ I + + T++TI + LNP WN + +F ++
Sbjct: 387 GRLMVHVIEATELKACKPNGKSNPYCEI---SMGSQSYTTRTIQDTLNPKWNFNCQFFIK 443
Query: 324 DASTQHLTVRVFD 336
D L + +FD
Sbjct: 444 DLYQDVLCLTLFD 456
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 9/131 (6%)
Query: 430 GKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAH 486
G+I Q D R VL + V A+NL +D G +DP+V L+L K+ ++ KT+
Sbjct: 20 GRIYIQAHID---REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK 76
Query: 487 DTLNPVWNQTFDFVV-EDGQHEMLILDVYDHD-TFGKDKMGKCIMTLTRVMMEGEIQDSF 544
+LNP WN+TF F + E + L ++++D D T D MG ++ + G + F
Sbjct: 77 CSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWF 135
Query: 545 HIDGTKSGKLF 555
+ + G+ F
Sbjct: 136 KLLSQEEGEYF 146
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 273 AKELTNKDLIGKSDPFVVIFV--RPLRDRMKTSKTINNELNPIWNEHFEFTVEDAST-QH 329
AK L D G SDP+V + + P + + +KTI LNP WNE F F ++++ +
Sbjct: 40 AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRR 99
Query: 330 LTVRVFD 336
L+V ++D
Sbjct: 100 LSVEIWD 106
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAG-NR----AKTRVAHDTLNPVWNQTFDF 499
+L + V++ +L K D+ G +DP+V L L A NR +T+ TLNP WN+ F F
Sbjct: 22 ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 500 VVEDGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRVMME 537
V H +L +V+D + +D +G+ + L+ + E
Sbjct: 82 RVNPSNHRLL-FEVFDENRLTRDDFLGQVDVPLSHLPTE 119
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 9/135 (6%)
Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMK----TSKTINNELNPIWNEHFEFT 321
L VK+V +L KD+ G SDP+V + + + + +KTI LNP WNE F F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 322 VEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKEL---EPGXXXXXXXXXXXXXXXQRD 378
V + S L VF DE + + +G + L L +P
Sbjct: 83 V-NPSNHRLLFEVF-DENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRSHK 140
Query: 379 TKNRGQVHLELLYCP 393
++ +G + L++ Y P
Sbjct: 141 SRVKGFLRLKMAYMP 155
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEF 320
K + + +V A+ L KD G SDP+V + V + R +KTI LNP+W E+F F
Sbjct: 14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKR---TKTIYGNLNPVWEENFHF 70
Query: 321 TVEDASTQHLTVRVFDDEGPM 341
++S + + VRV D++ +
Sbjct: 71 ECHNSSDR-IKVRVLDEDDDI 90
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDF 499
+SITV+ A+ L D G +DP+V +Q+ K R KT + LNPVW + F F
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKT--IYGNLNPVWEENFHF 70
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 446 LSITVIAAENLPKVDLIGKADPFV-VLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG 504
L + +I A LP +D+ G +DP+V V L + +T+V TLNPV+N+ F F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 505 Q--HEMLILDVYDHDTFGK 521
+ + L++ VYD D F K
Sbjct: 96 ELGGKTLVMAVYDFDRFSK 114
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 268 VKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTV--EDA 325
V ++QA EL D+ G SDP+V +F+ P + + +K LNP++NE F F V +
Sbjct: 38 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97
Query: 326 STQHLTVRVFD 336
+ L + V+D
Sbjct: 98 GGKTLVMAVYD 108
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 446 LSITVIAAENLPKVDLIGKADPFV-VLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG 504
L + +I A LP +D+ G +DP+V V L + +T+V TLNPV+N+ F F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 505 Q--HEMLILDVYDHDTFGK 521
+ + L++ VYD D F K
Sbjct: 96 ELGGKTLVMAVYDFDRFSK 114
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 268 VKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTV--EDA 325
V ++QA EL D+ G SDP+V +F+ P + + +K LNP++NE F F V +
Sbjct: 38 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97
Query: 326 STQHLTVRVFD 336
+ L + V+D
Sbjct: 98 GGKTLVMAVYD 108
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 446 LSITVIAAENLPKVDLIGKADPFV-VLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG 504
L + +I A LP +D+ G +DP+V V L + +T+V TLNPV+N+ F F V
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 505 Q--HEMLILDVYDHDTFGK 521
+ + L++ VYD D F K
Sbjct: 79 ELGGKTLVMAVYDFDRFSK 97
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 268 VKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTV--EDA 325
V ++QA EL D+ G SDP+V +F+ P + + +K LNP++NE F F V +
Sbjct: 21 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 80
Query: 326 STQHLTVRVFD 336
+ L + V+D
Sbjct: 81 GGKTLVMAVYD 91
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 446 LSITVIAAENLPKVDLIGKADPFV-VLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG 504
L + +I A LP +D+ G +DP+V V L + +T+V TLNPV+N+ F F V
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 505 Q--HEMLILDVYDHDTFGK 521
+ + L++ VYD D F K
Sbjct: 104 ELGGKTLVMAVYDFDRFSK 122
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 268 VKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTV--EDA 325
V ++QA EL D+ G SDP+V +F+ P + + +K LNP++NE F F V +
Sbjct: 46 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 105
Query: 326 STQHLTVRVFD 336
+ L + V+D
Sbjct: 106 GGKTLVMAVYD 116
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 9/131 (6%)
Query: 430 GKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAH 486
G+I Q D R VL + V A+NL +D G +DP+V L+L K+ ++ KT+
Sbjct: 161 GRIYIQAHID---REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK 217
Query: 487 DTLNPVWNQTFDFVV-EDGQHEMLILDVYDHD-TFGKDKMGKCIMTLTRVMMEGEIQDSF 544
+LNP WN+TF F + E + L ++++D D T D MG ++ + G + F
Sbjct: 218 SSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWF 276
Query: 545 HIDGTKSGKLF 555
+ + G+ F
Sbjct: 277 KLLSQEEGEYF 287
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 273 AKELTNKDLIGKSDPFVVIFV--RPLRDRMKTSKTINNELNPIWNEHFEFTVEDAST-QH 329
AK L D G SDP+V + + P + + +KTI + LNP WNE F F ++++ +
Sbjct: 181 AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRR 240
Query: 330 LTVRVFD 336
L+V ++D
Sbjct: 241 LSVEIWD 247
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDFVVE 502
+ +TV A NL +D G +DP+V L+L + + KTR TLNPVWN+TF F ++
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 503 DGQHE-MLILDVYDHD-TFGKDKMGKCIMTLTRVM 535
G E L ++V+D D T D MG ++ ++
Sbjct: 82 PGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSELL 116
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRM--KTSKTINNELNPIWNEHFEFTVE 323
+ V + +A+ L D G SDP+V + + P + + ++T+ LNP+WNE F F ++
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 324 DASTQ-HLTVRVFD 336
+ L+V V+D
Sbjct: 82 PGDVERRLSVEVWD 95
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDFVVE 502
L +TV A+NL +D G +DP+V L+L K ++ KT+ TLNP WN++F F ++
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 503 DGQHE-MLILDVYDHD-TFGKDKMGKCIMTLTRVM 535
+ L ++++D D T D MG ++ +M
Sbjct: 78 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELM 112
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFV--RPLRDRMKTSKTINNELNPIWNEHFEFTVE 323
L V + AK L D G SDP+V + + P + + +KTI + LNP WNE F F ++
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 324 DAST-QHLTVRVFD 336
+ + L+V ++D
Sbjct: 78 PSDKDRRLSVEIWD 91
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVE 502
G L + +++A+ L D + DP+V L + ++ T P WN+TF F V
Sbjct: 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGT-TPEWNETFIFTVS 67
Query: 503 DGQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFH---IDGTKSGKLFLNL 558
+G E L ++D D + D +G+ + L V +EG I + + D G++++ L
Sbjct: 68 EGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVAL 126
Query: 559 KWTPQ 563
+ P
Sbjct: 127 SFKPS 131
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFT 321
P GTL+V LV AK L + D + DP+V + R + ++ + P WNE F FT
Sbjct: 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGT--TPEWNETFIFT 65
Query: 322 VEDASTQHLTVRVFD 336
V + +T+ L ++FD
Sbjct: 66 VSEGTTE-LKAKIFD 79
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 280 DLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEG 339
D++ DP+V +F+ D K ++ NN++NP+WNE FEF ++ L + + D
Sbjct: 22 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD--A 79
Query: 340 PMLAPEIIGIAQIALKELEPG 360
+ E +G A + ++ G
Sbjct: 80 NYVMDETLGTATFTVSSMKVG 100
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 460 DLIGKADPFVVLQLKKA-GNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDT 518
D++ DP+V L + +R +TR ++ +NPVWN+TF+F+++ Q +L + + D +
Sbjct: 22 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81
Query: 519 FGKDKMGKCIMTLTRV 534
+ +G T++ +
Sbjct: 82 VMDETLGTATFTVSSM 97
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ 505
+ +TV+ A+NL K D DPF + + +G T +TL+P WNQ +D V G+
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV--GK 64
Query: 506 HEMLILDVYDHDTFGKDKMGKCIMTLTRVM 535
+ + + V++H K K G + R++
Sbjct: 65 TDSITISVWNHKKIHK-KQGAGFLGCVRLL 93
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 273 AKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTV 332
AK L KD DPF I V + ++ T+ N L+P WN+H++ V T +T+
Sbjct: 14 AKNLAKKDFFRLPDPFAKIVVDG-SGQCHSTDTVKNTLDPKWNQHYDLYV--GKTDSITI 70
Query: 333 RVFD 336
V++
Sbjct: 71 SVWN 74
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 280 DLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEG 339
D++ DP+V +F+ D K ++ NN++NP+WNE FEF ++ L + + D
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD--A 94
Query: 340 PMLAPEIIGIAQIALKELEPG 360
+ E +G A + ++ G
Sbjct: 95 NYVMDETLGTATFTVSSMKVG 115
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 460 DLIGKADPFVVLQLKKA-GNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDT 518
D++ DP+V L + +R +TR ++ +NPVWN+TF+F+++ Q +L + + D +
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 519 FGKDKMGKCIMTLTRV 534
+ +G T++ +
Sbjct: 97 VMDETLGTATFTVSSM 112
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDFVVE 502
L +TV A+NL +D G +DP+V L+L K ++ KT+ TLNP WN++F F ++
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 503 DGQHE-MLILDVYDHD-TFGKDKMGKCIMTLTRVM 535
+ L ++++D D T D MG ++ +M
Sbjct: 79 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELM 113
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFV--RPLRDRMKTSKTINNELNPIWNEHFEFTVE 323
L V + AK L D G SDP+V + + P + + +KTI + LNP WNE F F ++
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 324 DAST-QHLTVRVFD 336
+ + L+V ++D
Sbjct: 79 PSDKDRRLSVEIWD 92
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 280 DLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEG 339
D++ DP+V +F+ D K ++ NN++NP+WNE FEF ++ L + + D
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD--A 94
Query: 340 PMLAPEIIGIAQIALKELEPG 360
+ E +G A + ++ G
Sbjct: 95 NYVMDETLGTATFTVSSMKVG 115
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 460 DLIGKADPFVVLQLKKA-GNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDT 518
D++ DP+V L + +R +TR ++ +NPVWN+TF+F+++ Q +L + + D +
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 519 FGKDKMGKCIMTLTRV 534
+ +G T++ +
Sbjct: 97 VMDETLGTATFTVSSM 112
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ 505
L +TV+ A+NL K D DPF + + +G T +TL+P WNQ +D + G+
Sbjct: 5 LRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYI--GK 62
Query: 506 HEMLILDVYDHDTFGKDKMGKCIMTLTRVM 535
+ + + V++H K K G + R++
Sbjct: 63 SDSVTISVWNHKKIHK-KQGAGFLGCVRLL 91
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA 325
L + ++ AK L KD DPF + V + ++ T+ N L+P WN+H++ + +
Sbjct: 5 LRLTVLCAKNLVKKDFFRLPDPFAKVVVDG-SGQCHSTDTVKNTLDPKWNQHYDLYIGKS 63
Query: 326 STQHLTV 332
+ ++V
Sbjct: 64 DSVTISV 70
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 6/92 (6%)
Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFV 500
G L++ ++ A+NL K+D+ G +DP+V + L + G + KT + +TLNP +N++F F
Sbjct: 18 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 77
Query: 501 V--EDGQHEMLILDVYDHDTFGK-DKMGKCIM 529
V E Q +++ V D+D GK D +GK +
Sbjct: 78 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 109
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFV--RPLRDRMKTSKTINNELNPIWNEHFEF 320
G L V +++AK L D+ G SDP+V I + R + K + N LNP +NE F F
Sbjct: 17 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 76
Query: 321 TVEDASTQHLTVRV 334
V Q + V V
Sbjct: 77 EVPFEQIQKVQVVV 90
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 6/92 (6%)
Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFV 500
G L++ ++ A+NL K+D+ G +DP+V + L + G + KT + +TLNP +N++F F
Sbjct: 17 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 76
Query: 501 V--EDGQHEMLILDVYDHDTFGK-DKMGKCIM 529
V E Q +++ V D+D GK D +GK +
Sbjct: 77 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 108
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFV--RPLRDRMKTSKTINNELNPIWNEHFEF 320
G L V +++AK L D+ G SDP+V I + R + K + N LNP +NE F F
Sbjct: 16 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 75
Query: 321 TVEDASTQHLTVRV 334
V Q + V V
Sbjct: 76 EVPFEQIQKVQVVV 89
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 6/92 (6%)
Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFV 500
G L++ ++ A+NL K+D+ G +DP+V + L + G + KT + +TLNP +N++F F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 501 V--EDGQHEMLILDVYDHDTFGK-DKMGKCIM 529
V E Q +++ V D+D GK D +GK +
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 116
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFV--RPLRDRMKTSKTINNELNPIWNEHFEF 320
G L V +++AK L D+ G SDP+V I + R + K + N LNP +NE F F
Sbjct: 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83
Query: 321 TVEDASTQHLTVRV 334
V Q + V V
Sbjct: 84 EVPFEQIQKVQVVV 97
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN----RAKTRVAHDTLNPVWNQTFDFV 500
++ + VIA L K D++G +DP+V + L N +T+ +LNP WN+ F
Sbjct: 21 IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 501 VEDGQHEMLILDVYDHDTFGKD 522
V QH +L +V+D + +D
Sbjct: 81 VHPQQHRLL-FEVFDENRLTRD 101
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 268 VKLVQAKELTNKDLIGKSDPFV-VIFVRPLRDRMKT--SKTINNELNPIWNEHFEFTVED 324
V+++ L KD++G SDP+V V P+ + + +KTI LNP WNE F V
Sbjct: 24 VRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVH- 82
Query: 325 ASTQHLTVRVFDD 337
L VFD+
Sbjct: 83 PQQHRLLFEVFDE 95
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDF 499
R L + V A NL G +DP+V + L K+ R KT V+ TLNPV++Q+FDF
Sbjct: 23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDF 81
Query: 500 VVEDGQHEMLILDVYDHDTFG---KDK--MGKCIMTLT 532
V + + LDV ++ G KDK +GK ++ L
Sbjct: 82 SVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALA 119
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 285 SDPFVVIFVRPLRDRMKTSKT--INNELNPIWNEHFEFTVEDASTQHLTVRV-FDDEGPM 341
SDP+V +++ P + R KT LNP++++ F+F+V Q T+ V + G
Sbjct: 44 SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGF 103
Query: 342 LAPE--IIGIAQIALKELE 358
L+ + ++G +AL E
Sbjct: 104 LSKDKGLLGKVLVALASEE 122
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDFVVE 502
L +TV A+NL D G +DP+V L+L K ++ KT+ TLNP WN++F F ++
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 503 DGQHE-MLILDVYDHD 517
+ L ++++D D
Sbjct: 80 PSDKDRRLSVEIWDWD 95
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFV--RPLRDRMKTSKTINNELNPIWNEHFEFTVE 323
L V + AK L D G SDP+V + + P + + +KTI + LNP WNE F F ++
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 324 DAST-QHLTVRVFD 336
+ + L+V ++D
Sbjct: 80 PSDKDRRLSVEIWD 93
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 28/136 (20%)
Query: 430 GKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFV------------VLQLKKAG 477
G+I Q D+ G L I ++ A NL D G +DPFV V+Q A
Sbjct: 7 GEIQLQINYDL---GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 478 NRAKTRVAHDTLNPVWNQTFDF---VVEDGQHEMLILDVYDHDTF-GKDKMGKCIMTLTR 533
+ +T+ +LNP WNQT + +E + L + V+D+D F D +G+ ++ L+
Sbjct: 64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS- 122
Query: 534 VMMEGEIQDSFHIDGT 549
+ H+D T
Sbjct: 123 --------STSHLDNT 130
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Query: 263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRM-----------KTSKTINNELN 311
G L + ++QA+ L +D G SDPFV +++ P R ++ + +K + LN
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 312 PIWNE---HFEFTVEDASTQHLTVRVFD 336
P WN+ + ++E + L V V+D
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWD 104
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLK-KAGNRAK--TRVAHDTLNPVWNQTF-- 497
+G L + +I +L +D G +DPFV L LK G +AK T++ TLNP +N+ F
Sbjct: 14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73
Query: 498 DFVVEDGQHEMLILDVYDHDTFGK--DKMGKCIMTLT 532
D D + L + V+D+D GK D +G C + ++
Sbjct: 74 DIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGIS 109
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLK-KAGNRAK--TRVAHDTLNPVWNQTF-- 497
+G L + +I +L +D G +DPFV L LK G +AK T++ TLNP +N+ F
Sbjct: 36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 498 DFVVEDGQHEMLILDVYDHDTFGK--DKMGKCIMTLT 532
D D + L + V+D+D GK D +G C + ++
Sbjct: 96 DIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGIS 131
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLK-KAGNRAK--TRVAHDTLNPVWNQTF-- 497
+G L + +I +L D G +DPFV L LK G +AK T++ TLNP +N+ F
Sbjct: 36 QGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 498 DFVVEDGQHEMLILDVYDHDTFGK--DKMGKCIMTLT 532
D D + L + V+D+D GK D +G C + ++
Sbjct: 96 DIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGIS 131
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDFVV- 501
L++ V+ A +LPK D+ G +DP+V + L KK ++ KT V T N V+N+ F F +
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 502 ----EDGQHEMLILD 512
E+ E L+LD
Sbjct: 92 CESLEEISVEFLVLD 106
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN----RAKTRVAHDTLNPVWNQTFDFV 500
V+ + VIA L K D++G +DP+V + L + +T+ +LNP WN+ F
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 501 VEDGQHEMLILDVYDHDTFGKD 522
V +H +L +V+D + +D
Sbjct: 69 VLPQRHRIL-FEVFDENRLTRD 89
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 268 VKLVQAKELTNKDLIGKSDPFV-VIFVRPLRDRMKT--SKTINNELNPIWNEHFEFTV 322
VK++ L KD++G SDP+V V P+ + + +KTI LNP WNE F V
Sbjct: 12 VKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 270 LVQAKELTNKDLIGKSDPFV-VIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED---- 324
+V++ K GK DP V VIF K +K ++NELNP+WNE EF +
Sbjct: 12 IVESASNIPKTKFGKPDPIVSVIFKD----EKKKTKKVDNELNPVWNEILEFDLRGIPLD 67
Query: 325 -ASTQHLTVRVFDDEGPMLAPEIIGIAQIALKEL 357
+S+ + V+ F+ G ++IG A +ALK+L
Sbjct: 68 FSSSLGIIVKDFETIG---QNKLIGTATVALKDL 98
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVE- 502
G+L + V +A N+PK GK DP V + K + KT+ + LNPVWN+ +F +
Sbjct: 7 GMLRVIVESASNIPKTKF-GKPDPIVSVIFKDE--KKKTKKVDNELNPVWNEILEFDLRG 63
Query: 503 ---DGQHEMLILDVYDHDTFGKDKM 524
D + I+ V D +T G++K+
Sbjct: 64 IPLDFSSSLGII-VKDFETIGQNKL 87
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDFV-- 500
L +T++ A++LP + +P+V + + N+ +T+ TL P WNQTF +
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 79
Query: 501 -VEDGQHEMLILDVYDHDTFGKDK---MGKCIMTLTRVMMEGE 539
+ + ML + ++D +++ +G+ ++ L +++ E
Sbjct: 80 HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE 122
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFT 321
L V ++ AK+L +++ +P+V I+ P R + +KT+ L P WN+ F ++
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 446 LSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDFV-- 500
L +T++ A++LP + +P+V + + N+ +T+ TL P WNQTF +
Sbjct: 23 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 82
Query: 501 -VEDGQHEMLILDVYDHDTFGKDK---MGKCIMTLTRVMMEGE 539
+ + ML + ++D +++ +G+ ++ L +++ E
Sbjct: 83 HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE 125
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFT 321
L V ++ AK+L +++ +P+V I+ P R + +KT+ L P WN+ F ++
Sbjct: 23 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFV--RPLRDRMKTSKTINNELNPIWNEHFEF 320
++ V +++A+ L D+ G SDP+V +++ + R K + T LNPI+NE F F
Sbjct: 15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAF 74
Query: 321 TVEDASTQHLTV 332
+ + T+
Sbjct: 75 DIPTEKLRETTI 86
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 446 LSITVIAAENLPKVDLIGKA--DPFVVLQL----KKAGNRAKTRVAHDTLNPVWNQTFDF 499
L + +I+ + LPKV+ + DP V++++ + G+R + ++ NP W+ F+F
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 500 VVEDGQHEMLILDVYDHDTFGKD 522
V ++ V D+D+ K+
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKN 581
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 266 LDVKLVQAKEL--TNKDLIGKSDPFVVIFVRPL-RD--RMKTSKTINNELNPIWNEHFEF 320
L V+++ ++L NK+ DP V++ + + RD +T+ NN NP W+ FEF
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 321 --TVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
TV D + V +D + IG + I L+ G
Sbjct: 559 EVTVPDLALVRFMVEDYDSSS---KNDFIGQSTIPWNSLKQG 597
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 443 RGVLSITVIAAENLPKVDLIG-KADPFVVLQ-LKKAGNRAKTRVAHDTLNPVWNQTFDFV 500
R + + A LP +D +DP++ + L + ++ KTRV TL+P +++TF F
Sbjct: 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80
Query: 501 ---VEDGQHEMLILDVYDHDTFGKDK-MGKCIMTLT-------RVMMEGEIQDSFHIDGT 549
Q L + D F +D +G+ ++ L+ +++M EI I G
Sbjct: 81 GIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI-----ISGP 135
Query: 550 KSG 552
SG
Sbjct: 136 SSG 138
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 446 LSITVIAAENLPKVDLIGKA--DPFVVLQL----KKAGNRAKTRVAHDTLNPVWNQTFDF 499
L + +I+ + LPKV+ + DP V++++ + G+R + ++ NP W+ F+F
Sbjct: 497 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 556
Query: 500 VVEDGQHEMLILDVYDHDTFGKD 522
V ++ V D+D+ K+
Sbjct: 557 EVTVPDLALVRFMVEDYDSSSKN 579
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 266 LDVKLVQAKEL--TNKDLIGKSDPFVVIFVRPL-RD--RMKTSKTINNELNPIWNEHFEF 320
L V+++ ++L NK+ DP V++ + + RD +T+ NN NP W+ FEF
Sbjct: 497 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 556
Query: 321 --TVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG 360
TV D + V +D + IG + I L+ G
Sbjct: 557 EVTVPDLALVRFMVEDYDSSS---KNDFIGQSTIPWNSLKQG 595
>pdb|3VLX|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Ligand Free Form From Tobacco Leaf
pdb|3VLY|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Partial Complex From Tobacco Leaf
pdb|3VLZ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Full Complex From Tobacco Leaf
pdb|3VM0|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - No2
Complex From Tobacco Leaf
pdb|3VM1|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Hco3 Complex From Tobacco Leaf
Length = 584
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 23/93 (24%)
Query: 98 EPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMELE----------M 147
EP+L + P K + QF G AI+E+++ IT E++ M
Sbjct: 449 EPVLSTFSPD---PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRM 505
Query: 148 QWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
W G PN VQV +IGF G
Sbjct: 506 HWTGCPNTCAQ----------VQVADIGFMGCL 528
>pdb|3B0N|A Chain A, Q448k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 23/93 (24%)
Query: 98 EPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMELE----------M 147
EP+L + P K + QF G AI+E+++ IT E++ M
Sbjct: 449 EPVLSTFSPD---PPILMKGLVACTGNQFCGKAIIETKARSLKITEEVQRQVSLTKPVRM 505
Query: 148 QWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
W G PN VQV +IGF G
Sbjct: 506 HWTGCPNTCAQ----------VQVADIGFMGCL 528
>pdb|3B0M|A Chain A, M175k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 23/93 (24%)
Query: 98 EPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMELE----------M 147
EP+L + P K + QF G AI+E+++ IT E++ M
Sbjct: 449 EPVLSTFSPD---PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRM 505
Query: 148 QWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
W G PN VQV +IGF G
Sbjct: 506 HWTGCPNTCAQ----------VQVADIGFMGCL 528
>pdb|3B0J|A Chain A, M175e Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 23/93 (24%)
Query: 98 EPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMELE----------M 147
EP+L + P K + QF G AI+E+++ IT E++ M
Sbjct: 449 EPVLSTFSPD---PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRM 505
Query: 148 QWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
W G PN VQV +IGF G
Sbjct: 506 HWTGCPNTCAQ----------VQVADIGFMGCL 528
>pdb|3B0L|A Chain A, M175g Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 23/93 (24%)
Query: 98 EPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMELE----------M 147
EP+L + P K + QF G AI+E+++ IT E++ M
Sbjct: 449 EPVLSTFSPD---PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRM 505
Query: 148 QWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
W G PN VQV +IGF G
Sbjct: 506 HWTGCPNTCAQ----------VQVADIGFMGCL 528
>pdb|3B0G|A Chain A, Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf
pdb|3VKP|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Low X-Ray Dose
pdb|3VKQ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Middle X-Ray Dose
pdb|3VKR|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With High X-Ray Dose
pdb|3VKS|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No Complex From
Tobbaco Leaf
pdb|3VKT|A Chain A, Assimilatory Nitrite Reductase (Nii3) - Nh2oh Complex From
Tobbaco Leaf
Length = 591
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 23/93 (24%)
Query: 98 EPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMELE----------M 147
EP+L + P K + QF G AI+E+++ IT E++ M
Sbjct: 449 EPVLSTFSPD---PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRM 505
Query: 148 QWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180
W G PN VQV +IGF G
Sbjct: 506 HWTGCPNTCAQ----------VQVADIGFMGCL 528
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 430 GKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGK-ADPFVVLQL---KKAGNRAKTRVA 485
G+IA K + + ++ + V L D K ++P+V L K + KT +
Sbjct: 10 GRIAFSLKYEQQTQSLV-VHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIK 68
Query: 486 HDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQ-D 542
DT+NP++++T + + + L V+ H FG++ + E EIQ D
Sbjct: 69 RDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTF----------LGEAEIQMD 118
Query: 543 SFHID 547
S+ +D
Sbjct: 119 SWKLD 123
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Query: 428 ELGKIATQKKSDVIVRGVLSITVIAAENLP--------KVDLIGKADPFV-VLQLKKAGN 478
+LG + + D++ L++ VI A +LP + D+ ++P+V + L N
Sbjct: 11 QLGMLHFSTQYDLL-HNHLTVRVIEARDLPPPISHDGSRQDM-AHSNPYVKICLLPDQKN 68
Query: 479 RAKTRVAHDTLNPVWNQTFDFVVE--DGQHEMLILDVYDHDTFGKDK-MGKCIMTLTRV 534
+T V T PV+ + + F + + Q L+L V D D F + +GK + L V
Sbjct: 69 SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEV 127
>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain
pdb|2Q3X|B Chain B, The Rim1alpha C2b Domain
Length = 171
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 432 IATQKKSDVIV-----RGVLSITVIAAENLP-KVDLIGKADPFVVLQLKKAGN---RAKT 482
+AT D+ + +G L + VI A +L K P+V + L + G + KT
Sbjct: 13 LATPAXGDIQIGXEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKT 72
Query: 483 RVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMME 537
R+A TL+P++ Q+ F D + +L V +G+ KC + ++++E
Sbjct: 73 RIARKTLDPLYQQSLVF---DESPQGKVLQVIVWGDYGRXDH-KCFXGVAQILLE 123
>pdb|1IOA|A Chain A, Arcelin-5, A Lectin-Like Defense Protein From Phaseolus
Vulgaris
pdb|1IOA|B Chain B, Arcelin-5, A Lectin-Like Defense Protein From Phaseolus
Vulgaris
Length = 240
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 17/74 (22%)
Query: 431 KIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKA---DPFVVLQLKKAGNRAKTRVAHD 487
K+ Q + + +G L +T + + LP+VD +G+A DP +Q+K + N A
Sbjct: 16 KLILQGNATISSKGQLQLTGVGSNELPRVDSLGRAFYSDP---IQIKDSNNVAS------ 66
Query: 488 TLNPVWNQTFDFVV 501
+N F F++
Sbjct: 67 -----FNTNFTFII 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,632,956
Number of Sequences: 62578
Number of extensions: 619655
Number of successful extensions: 1265
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1135
Number of HSP's gapped (non-prelim): 100
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)