Query 008305
Match_columns 570
No_of_seqs 478 out of 2673
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 22:07:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 9.4E-59 2E-63 497.6 43.9 451 66-567 218-698 (1227)
2 KOG1028 Ca2+-dependent phospho 100.0 6.8E-30 1.5E-34 264.3 24.5 224 259-533 162-393 (421)
3 KOG2059 Ras GTPase-activating 99.9 3.2E-23 6.9E-28 213.2 15.1 250 264-568 5-283 (800)
4 cd04016 C2_Tollip C2 domain pr 99.9 3.1E-22 6.8E-27 171.2 14.4 119 263-391 1-121 (121)
5 COG5038 Ca2+-dependent lipid-b 99.9 2.8E-20 6.1E-25 202.0 26.7 340 222-567 656-1167(1227)
6 cd08682 C2_Rab11-FIP_classI C2 99.9 8.5E-21 1.8E-25 165.5 13.7 119 266-390 1-126 (126)
7 cd08681 C2_fungal_Inn1p-like C 99.8 2E-20 4.3E-25 161.4 12.7 117 264-391 1-118 (118)
8 cd04016 C2_Tollip C2 domain pr 99.8 4.3E-20 9.4E-25 158.0 14.2 113 444-560 2-121 (121)
9 cd04042 C2A_MCTP_PRT C2 domain 99.8 6.8E-20 1.5E-24 158.6 15.0 120 266-393 2-121 (121)
10 cd08379 C2D_MCTP_PRT_plant C2 99.8 9.1E-20 2E-24 157.0 14.2 117 265-387 1-125 (126)
11 cd08375 C2_Intersectin C2 doma 99.8 1.4E-19 3E-24 159.2 15.3 119 261-391 12-135 (136)
12 cd08395 C2C_Munc13 C2 domain t 99.8 1.1E-19 2.5E-24 155.0 14.1 109 265-375 1-116 (120)
13 cd04019 C2C_MCTP_PRT_plant C2 99.8 1.3E-19 2.8E-24 161.8 14.3 125 265-393 1-133 (150)
14 cd08376 C2B_MCTP_PRT C2 domain 99.8 2.4E-19 5.1E-24 154.1 14.8 115 265-392 1-115 (116)
15 cd04036 C2_cPLA2 C2 domain pre 99.8 2.2E-19 4.8E-24 155.0 14.4 116 266-391 2-117 (119)
16 cd04024 C2A_Synaptotagmin-like 99.8 2E-19 4.3E-24 157.5 13.8 123 264-391 1-128 (128)
17 cd04022 C2A_MCTP_PRT_plant C2 99.8 2E-19 4.4E-24 157.0 13.7 120 265-391 1-125 (127)
18 cd08681 C2_fungal_Inn1p-like C 99.8 1.7E-19 3.7E-24 155.5 13.0 115 444-560 1-118 (118)
19 cd08391 C2A_C2C_Synaptotagmin_ 99.8 3.3E-19 7E-24 154.6 14.0 115 444-560 1-121 (121)
20 cd04036 C2_cPLA2 C2 domain pre 99.8 4.7E-19 1E-23 152.9 14.8 115 446-560 2-117 (119)
21 cd08677 C2A_Synaptotagmin-13 C 99.8 1.8E-19 3.8E-24 151.5 11.3 107 259-369 9-118 (118)
22 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 6.4E-19 1.4E-23 152.0 15.1 119 266-391 2-121 (121)
23 cd08375 C2_Intersectin C2 doma 99.8 8.6E-19 1.9E-23 154.2 16.0 118 441-560 12-135 (136)
24 cd08682 C2_Rab11-FIP_classI C2 99.8 3.6E-19 7.8E-24 155.2 13.2 112 446-559 1-126 (126)
25 cd08400 C2_Ras_p21A1 C2 domain 99.8 9.3E-19 2E-23 152.3 15.3 122 263-393 3-124 (126)
26 cd08381 C2B_PI3K_class_II C2 d 99.8 6.6E-19 1.4E-23 152.1 14.3 103 443-546 12-121 (122)
27 cd08678 C2_C21orf25-like C2 do 99.8 1.1E-18 2.5E-23 152.0 15.9 122 266-394 1-122 (126)
28 cd08379 C2D_MCTP_PRT_plant C2 99.8 7.8E-19 1.7E-23 151.3 14.6 109 445-556 1-125 (126)
29 KOG1030 Predicted Ca2+-depende 99.8 1.7E-19 3.8E-24 157.0 10.5 96 261-361 3-98 (168)
30 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.3E-18 2.7E-23 149.6 15.8 114 445-561 1-115 (116)
31 cd04028 C2B_RIM1alpha C2 domai 99.8 1.1E-18 2.4E-23 153.9 15.6 106 443-549 28-139 (146)
32 cd04015 C2_plant_PLD C2 domain 99.8 8.5E-19 1.8E-23 158.3 15.2 123 263-392 6-158 (158)
33 cd08381 C2B_PI3K_class_II C2 d 99.8 3.8E-19 8.3E-24 153.6 12.1 105 263-369 12-121 (122)
34 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 8E-19 1.7E-23 152.4 14.2 121 265-389 1-122 (123)
35 cd04028 C2B_RIM1alpha C2 domai 99.8 8.3E-19 1.8E-23 154.6 14.3 109 263-373 28-140 (146)
36 cd08391 C2A_C2C_Synaptotagmin_ 99.8 6.4E-19 1.4E-23 152.7 13.4 115 264-391 1-121 (121)
37 cd08677 C2A_Synaptotagmin-13 C 99.8 6.3E-19 1.4E-23 148.2 12.7 101 443-546 13-118 (118)
38 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.3E-18 2.8E-23 150.6 15.0 116 445-562 1-121 (121)
39 cd04044 C2A_Tricalbin-like C2 99.8 1.4E-18 3.1E-23 151.2 13.8 122 263-393 1-124 (124)
40 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.7E-18 3.7E-23 150.4 14.0 105 443-547 14-125 (125)
41 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.3E-18 2.8E-23 150.1 12.9 114 265-391 1-119 (121)
42 cd04024 C2A_Synaptotagmin-like 99.8 1.9E-18 4.2E-23 151.3 14.0 115 444-560 1-128 (128)
43 cd04019 C2C_MCTP_PRT_plant C2 99.8 1.9E-18 4.2E-23 154.3 13.8 119 445-565 1-136 (150)
44 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.2E-18 2.5E-23 151.5 12.1 109 260-369 11-124 (125)
45 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.5E-18 3.4E-23 150.9 12.5 110 260-370 12-123 (124)
46 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.8E-18 4E-23 150.0 12.8 110 259-369 10-124 (125)
47 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 4.9E-18 1.1E-22 149.7 15.2 122 265-391 1-132 (133)
48 cd04029 C2A_SLP-4_5 C2 domain 99.8 3.8E-18 8.3E-23 148.1 14.1 105 443-547 14-125 (125)
49 cd08678 C2_C21orf25-like C2 do 99.8 5.2E-18 1.1E-22 147.9 14.9 116 446-564 1-123 (126)
50 cd08387 C2A_Synaptotagmin-8 C2 99.8 4.4E-18 9.6E-23 148.0 14.2 105 443-547 15-123 (124)
51 cd08377 C2C_MCTP_PRT C2 domain 99.8 6.9E-18 1.5E-22 145.7 15.2 118 264-391 1-118 (119)
52 cd04022 C2A_MCTP_PRT_plant C2 99.8 3.8E-18 8.2E-23 149.0 13.6 115 445-561 1-126 (127)
53 cd08392 C2A_SLP-3 C2 domain fi 99.8 5.8E-18 1.3E-22 147.2 14.3 105 443-547 14-128 (128)
54 cd04046 C2_Calpain C2 domain p 99.8 8.6E-18 1.9E-22 146.4 15.2 123 262-393 1-123 (126)
55 cd08385 C2A_Synaptotagmin-1-5- 99.8 3.7E-18 8.1E-23 148.5 12.7 110 260-370 12-123 (124)
56 cd04015 C2_plant_PLD C2 domain 99.8 8E-18 1.7E-22 151.9 14.6 118 442-561 5-158 (158)
57 cd04041 C2A_fungal C2 domain f 99.8 2.4E-18 5.3E-23 146.3 10.3 102 264-369 1-106 (111)
58 cd08385 C2A_Synaptotagmin-1-5- 99.8 1.3E-17 2.8E-22 145.1 15.0 105 443-547 15-123 (124)
59 cd08378 C2B_MCTP_PRT_plant C2 99.8 7.5E-18 1.6E-22 145.3 13.4 110 445-560 1-119 (121)
60 cd08685 C2_RGS-like C2 domain 99.8 6.9E-18 1.5E-22 144.9 13.0 103 443-546 11-119 (119)
61 cd04010 C2B_RasA3 C2 domain se 99.8 5.6E-18 1.2E-22 150.4 12.4 105 266-373 2-124 (148)
62 cd08388 C2A_Synaptotagmin-4-11 99.8 1E-17 2.2E-22 146.0 13.6 110 260-370 12-127 (128)
63 cd08680 C2_Kibra C2 domain fou 99.8 4.5E-18 9.8E-23 146.5 11.2 110 259-369 9-124 (124)
64 cd04014 C2_PKC_epsilon C2 doma 99.8 1.5E-17 3.2E-22 146.3 14.7 115 263-392 3-129 (132)
65 cd04050 C2B_Synaptotagmin-like 99.8 9.4E-18 2E-22 141.2 12.9 102 445-550 1-104 (105)
66 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.3E-17 2.7E-22 143.9 13.9 113 446-560 2-121 (121)
67 cd08392 C2A_SLP-3 C2 domain fi 99.8 1E-17 2.2E-22 145.6 12.7 110 259-369 10-127 (128)
68 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.8E-17 3.9E-22 143.3 14.1 118 266-390 2-120 (121)
69 cd08373 C2A_Ferlin C2 domain f 99.8 2.8E-17 6.1E-22 143.5 15.3 117 270-396 2-120 (127)
70 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.5E-17 5.4E-22 143.3 14.9 116 443-563 3-125 (126)
71 cd04017 C2D_Ferlin C2 domain f 99.8 2.5E-17 5.5E-22 145.3 15.0 120 265-394 2-134 (135)
72 cd08382 C2_Smurf-like C2 domai 99.8 1.9E-17 4.1E-22 143.6 14.0 118 266-389 2-122 (123)
73 cd08680 C2_Kibra C2 domain fou 99.7 1.4E-17 3.1E-22 143.4 12.9 104 443-546 13-124 (124)
74 cd08395 C2C_Munc13 C2 domain t 99.7 1.6E-17 3.5E-22 141.8 13.0 104 445-549 1-113 (120)
75 cd08685 C2_RGS-like C2 domain 99.7 7.7E-18 1.7E-22 144.6 11.0 107 262-369 10-119 (119)
76 cd04030 C2C_KIAA1228 C2 domain 99.7 3.6E-17 7.8E-22 143.0 15.3 105 443-547 15-127 (127)
77 cd04043 C2_Munc13_fungal C2 do 99.7 2.7E-17 5.9E-22 143.5 14.5 117 265-392 2-121 (126)
78 cd04050 C2B_Synaptotagmin-like 99.7 1E-17 2.3E-22 140.9 11.4 100 265-371 1-102 (105)
79 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 2.3E-17 5.1E-22 149.4 14.4 109 441-549 24-139 (162)
80 cd04031 C2A_RIM1alpha C2 domai 99.7 2.6E-17 5.7E-22 143.4 14.2 104 443-547 15-125 (125)
81 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.5E-17 3.2E-22 145.0 12.0 111 259-370 11-124 (125)
82 cd08388 C2A_Synaptotagmin-4-11 99.7 6.6E-17 1.4E-21 140.9 15.9 105 443-547 15-127 (128)
83 cd08389 C2A_Synaptotagmin-14_1 99.7 1.6E-17 3.5E-22 144.0 11.9 110 259-370 11-123 (124)
84 cd04039 C2_PSD C2 domain prese 99.7 1.8E-17 3.9E-22 139.7 11.3 94 264-361 1-99 (108)
85 cd08521 C2A_SLP C2 domain firs 99.7 2.3E-17 4.9E-22 143.4 11.7 109 260-369 10-123 (123)
86 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 4.3E-17 9.3E-22 141.5 13.3 112 445-558 1-122 (123)
87 cd08521 C2A_SLP C2 domain firs 99.7 4.8E-17 1E-21 141.3 13.5 104 443-546 13-123 (123)
88 cd04014 C2_PKC_epsilon C2 doma 99.7 7.8E-17 1.7E-21 141.7 14.7 115 443-562 3-130 (132)
89 cd08390 C2A_Synaptotagmin-15-1 99.7 5.7E-17 1.2E-21 140.8 13.6 111 259-370 9-122 (123)
90 cd08389 C2A_Synaptotagmin-14_1 99.7 6.8E-17 1.5E-21 140.1 13.9 105 443-548 15-124 (124)
91 cd04044 C2A_Tricalbin-like C2 99.7 7E-17 1.5E-21 140.5 13.6 118 444-562 2-124 (124)
92 cd04046 C2_Calpain C2 domain p 99.7 1.6E-16 3.6E-21 138.3 15.6 118 443-565 2-126 (126)
93 cd04030 C2C_KIAA1228 C2 domain 99.7 6.2E-17 1.3E-21 141.5 12.8 110 260-369 12-126 (127)
94 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.1E-16 2.4E-21 141.0 14.2 116 445-561 1-133 (133)
95 cd08386 C2A_Synaptotagmin-7 C2 99.7 1E-16 2.2E-21 139.7 13.7 105 443-547 15-124 (125)
96 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 9E-17 2E-21 138.9 13.1 112 446-559 2-120 (121)
97 cd04043 C2_Munc13_fungal C2 do 99.7 2E-16 4.3E-21 138.1 15.3 115 445-561 2-121 (126)
98 cd04027 C2B_Munc13 C2 domain s 99.7 1.1E-16 2.5E-21 139.5 13.7 116 265-389 2-127 (127)
99 cd08688 C2_KIAA0528-like C2 do 99.7 4.1E-17 8.8E-22 138.6 10.6 101 266-370 1-108 (110)
100 cd08394 C2A_Munc13 C2 domain f 99.7 7.9E-17 1.7E-21 136.8 12.0 100 264-373 2-103 (127)
101 cd04031 C2A_RIM1alpha C2 domai 99.7 6.3E-17 1.4E-21 141.0 11.8 107 261-369 13-124 (125)
102 cd04051 C2_SRC2_like C2 domain 99.7 5.6E-17 1.2E-21 141.3 11.2 115 265-387 1-125 (125)
103 cd04052 C2B_Tricalbin-like C2 99.7 6.4E-17 1.4E-21 137.5 11.1 102 461-563 9-111 (111)
104 cd08676 C2A_Munc13-like C2 dom 99.7 8.2E-17 1.8E-21 143.3 12.0 104 260-369 24-153 (153)
105 cd08390 C2A_Synaptotagmin-15-1 99.7 2.4E-16 5.2E-21 136.9 14.7 106 443-548 13-123 (123)
106 cd08377 C2C_MCTP_PRT C2 domain 99.7 3.2E-16 6.9E-21 135.3 15.3 112 444-560 1-118 (119)
107 cd04040 C2D_Tricalbin-like C2 99.7 1.8E-16 3.9E-21 136.0 13.5 113 266-386 1-113 (115)
108 cd08690 C2_Freud-1 C2 domain f 99.7 3.1E-16 6.6E-21 139.3 15.1 121 267-392 5-137 (155)
109 cd08406 C2B_Synaptotagmin-12 C 99.7 3.3E-16 7.1E-21 137.3 14.6 102 443-546 14-121 (136)
110 PLN03008 Phospholipase D delta 99.7 1.6E-16 3.4E-21 170.9 15.1 130 262-398 12-183 (868)
111 cd04010 C2B_RasA3 C2 domain se 99.7 1.7E-16 3.7E-21 140.9 12.5 102 445-548 1-122 (148)
112 cd08407 C2B_Synaptotagmin-13 C 99.7 9E-17 1.9E-21 140.8 10.4 91 443-533 14-112 (138)
113 cd08394 C2A_Munc13 C2 domain f 99.7 2.1E-16 4.5E-21 134.3 12.1 98 444-548 2-101 (127)
114 KOG1030 Predicted Ca2+-depende 99.7 7.8E-17 1.7E-21 140.5 9.6 93 442-537 4-97 (168)
115 cd08373 C2A_Ferlin C2 domain f 99.7 5.4E-16 1.2E-20 135.4 15.1 114 450-567 2-122 (127)
116 cd04049 C2_putative_Elicitor-r 99.7 1.8E-16 4E-21 137.8 12.0 104 264-371 1-108 (124)
117 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.5E-16 3.3E-21 144.1 11.8 109 261-370 24-137 (162)
118 cd08382 C2_Smurf-like C2 domai 99.7 3.5E-16 7.5E-21 135.6 13.1 110 446-558 2-122 (123)
119 cd08675 C2B_RasGAP C2 domain s 99.7 1.9E-16 4.1E-21 139.6 11.6 106 266-373 1-122 (137)
120 cd04045 C2C_Tricalbin-like C2 99.7 2.2E-16 4.7E-21 136.0 11.6 103 264-371 1-103 (120)
121 cd04041 C2A_fungal C2 domain f 99.7 1.8E-16 3.9E-21 134.8 10.9 102 444-548 1-108 (111)
122 cd08691 C2_NEDL1-like C2 domai 99.7 1.2E-15 2.6E-20 133.6 16.2 118 265-389 2-136 (137)
123 cd04017 C2D_Ferlin C2 domain f 99.7 7E-16 1.5E-20 136.1 14.8 117 445-563 2-134 (135)
124 cd04026 C2_PKC_alpha_gamma C2 99.7 4.6E-16 1E-20 136.7 13.6 110 444-554 13-127 (131)
125 cd04038 C2_ArfGAP C2 domain pr 99.7 3.7E-16 8E-21 138.4 12.3 93 263-361 1-93 (145)
126 cd04011 C2B_Ferlin C2 domain s 99.7 4E-16 8.7E-21 132.8 12.0 98 265-370 5-109 (111)
127 cd04032 C2_Perforin C2 domain 99.7 3.4E-16 7.4E-21 135.1 11.6 94 261-359 25-119 (127)
128 cd08406 C2B_Synaptotagmin-12 C 99.7 4.9E-16 1.1E-20 136.3 12.6 109 259-370 10-122 (136)
129 cd04018 C2C_Ferlin C2 domain t 99.7 4.4E-16 9.5E-21 138.5 12.1 103 265-371 1-125 (151)
130 cd08688 C2_KIAA0528-like C2 do 99.7 3.7E-16 8.1E-21 132.6 11.0 101 446-548 1-109 (110)
131 cd08384 C2B_Rabphilin_Doc2 C2 99.7 1.8E-16 3.8E-21 139.7 8.7 110 259-371 8-121 (133)
132 cd08404 C2B_Synaptotagmin-4 C2 99.7 2.8E-16 6.2E-21 138.8 9.9 105 443-549 14-124 (136)
133 cd08676 C2A_Munc13-like C2 dom 99.7 3.4E-16 7.4E-21 139.4 10.3 102 441-546 25-153 (153)
134 cd08690 C2_Freud-1 C2 domain f 99.7 2.1E-15 4.6E-20 134.0 15.3 118 447-564 5-140 (155)
135 cd08692 C2B_Tac2-N C2 domain s 99.7 5.4E-16 1.2E-20 133.7 11.1 103 443-546 13-121 (135)
136 cd04027 C2B_Munc13 C2 domain s 99.7 1.2E-15 2.6E-20 133.0 13.4 109 445-558 2-127 (127)
137 cd04039 C2_PSD C2 domain prese 99.7 8.2E-16 1.8E-20 129.5 11.7 93 444-538 1-99 (108)
138 cd08407 C2B_Synaptotagmin-13 C 99.7 2.5E-16 5.4E-21 138.0 8.8 109 259-370 10-124 (138)
139 cd04013 C2_SynGAP_like C2 doma 99.7 2.4E-15 5.3E-20 132.2 14.6 126 261-394 8-141 (146)
140 cd04052 C2B_Tricalbin-like C2 99.7 8.3E-16 1.8E-20 130.7 11.1 101 281-393 9-110 (111)
141 cd08408 C2B_Synaptotagmin-14_1 99.6 2.3E-15 4.9E-20 132.7 13.6 110 259-370 10-124 (138)
142 cd04009 C2B_Munc13-like C2 dom 99.6 2.4E-15 5.3E-20 132.2 13.8 94 443-536 15-118 (133)
143 cd04009 C2B_Munc13-like C2 dom 99.6 1.4E-15 3E-20 133.8 12.0 98 261-359 13-118 (133)
144 cd08405 C2B_Synaptotagmin-7 C2 99.6 2.9E-15 6.3E-20 132.4 13.6 102 443-546 14-121 (136)
145 cd04037 C2E_Ferlin C2 domain f 99.6 8.3E-16 1.8E-20 133.3 9.8 120 265-393 1-120 (124)
146 cd04018 C2C_Ferlin C2 domain t 99.6 2E-15 4.3E-20 134.3 12.3 107 446-554 2-131 (151)
147 cd08409 C2B_Synaptotagmin-15 C 99.6 6.8E-16 1.5E-20 136.2 9.3 104 443-547 14-123 (137)
148 cd04021 C2_E3_ubiquitin_ligase 99.6 5.1E-15 1.1E-19 128.6 14.6 117 265-389 3-124 (125)
149 cd04049 C2_putative_Elicitor-r 99.6 3.5E-15 7.6E-20 129.7 13.5 105 444-550 1-110 (124)
150 cd08404 C2B_Synaptotagmin-4 C2 99.6 6.3E-16 1.4E-20 136.6 8.8 107 261-370 12-122 (136)
151 cd08402 C2B_Synaptotagmin-1 C2 99.6 1E-15 2.2E-20 135.3 9.9 105 443-549 14-124 (136)
152 cd00276 C2B_Synaptotagmin C2 d 99.6 8.9E-16 1.9E-20 135.5 9.4 107 443-551 13-125 (134)
153 cd04045 C2C_Tricalbin-like C2 99.6 3.7E-15 8.1E-20 128.3 12.8 109 444-555 1-110 (120)
154 cd04051 C2_SRC2_like C2 domain 99.6 2.3E-15 5.1E-20 131.0 11.7 111 445-556 1-125 (125)
155 cd08410 C2B_Synaptotagmin-17 C 99.6 5.6E-15 1.2E-19 130.2 14.1 105 443-548 13-123 (135)
156 cd04040 C2D_Tricalbin-like C2 99.6 5E-15 1.1E-19 127.0 13.3 109 446-555 1-113 (115)
157 KOG0696 Serine/threonine prote 99.6 2.9E-16 6.2E-21 153.9 6.1 110 443-553 179-293 (683)
158 cd08408 C2B_Synaptotagmin-14_1 99.6 7.1E-15 1.5E-19 129.6 14.4 103 443-546 14-123 (138)
159 cd04048 C2A_Copine C2 domain f 99.6 2.5E-15 5.4E-20 129.8 11.3 100 270-370 6-113 (120)
160 cd08405 C2B_Synaptotagmin-7 C2 99.6 2.4E-15 5.3E-20 132.9 11.5 110 259-371 10-123 (136)
161 cd08402 C2B_Synaptotagmin-1 C2 99.6 3.5E-15 7.5E-20 131.9 12.4 110 259-371 10-123 (136)
162 cd08692 C2B_Tac2-N C2 domain s 99.6 1.8E-15 4E-20 130.5 10.2 111 258-370 8-122 (135)
163 cd08383 C2A_RasGAP C2 domain ( 99.6 6.3E-15 1.4E-19 126.7 13.4 114 266-391 2-117 (117)
164 KOG0696 Serine/threonine prote 99.6 1.6E-16 3.5E-21 155.6 3.8 110 262-373 178-290 (683)
165 cd08403 C2B_Synaptotagmin-3-5- 99.6 5.1E-16 1.1E-20 136.9 6.6 110 259-371 9-122 (134)
166 cd04035 C2A_Rabphilin_Doc2 C2 99.6 8.4E-15 1.8E-19 127.1 14.2 102 443-544 14-121 (123)
167 cd04038 C2_ArfGAP C2 domain pr 99.6 9.7E-15 2.1E-19 129.3 14.1 91 444-538 2-93 (145)
168 cd04026 C2_PKC_alpha_gamma C2 99.6 5.3E-15 1.1E-19 129.9 12.1 107 264-372 13-122 (131)
169 cd08686 C2_ABR C2 domain in th 99.6 1.5E-14 3.2E-19 121.3 14.1 82 266-355 1-91 (118)
170 cd08384 C2B_Rabphilin_Doc2 C2 99.6 1.9E-15 4.1E-20 133.1 9.3 104 443-548 12-121 (133)
171 cd04011 C2B_Ferlin C2 domain s 99.6 5.9E-15 1.3E-19 125.6 11.9 100 443-548 3-110 (111)
172 cd04013 C2_SynGAP_like C2 doma 99.6 1E-14 2.2E-19 128.3 13.4 118 442-566 9-144 (146)
173 cd08675 C2B_RasGAP C2 domain s 99.6 5.2E-15 1.1E-19 130.4 11.7 104 446-550 1-122 (137)
174 PLN03200 cellulose synthase-in 99.6 2.1E-15 4.7E-20 176.8 11.9 119 442-563 1978-2102(2102)
175 cd08410 C2B_Synaptotagmin-17 C 99.6 8E-15 1.7E-19 129.2 12.7 111 259-371 9-123 (135)
176 PLN03008 Phospholipase D delta 99.6 6.6E-15 1.4E-19 158.6 14.4 125 441-567 11-183 (868)
177 cd08403 C2B_Synaptotagmin-3-5- 99.6 3.3E-15 7.1E-20 131.7 9.7 102 443-546 13-120 (134)
178 cd08409 C2B_Synaptotagmin-15 C 99.6 2.9E-15 6.2E-20 132.2 9.1 109 260-370 11-123 (137)
179 KOG1013 Synaptic vesicle prote 99.6 3.7E-16 8E-21 148.7 3.3 228 255-531 84-326 (362)
180 cd08691 C2_NEDL1-like C2 domai 99.6 2.7E-14 5.9E-19 125.1 14.7 111 445-558 2-136 (137)
181 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.4E-14 3.1E-19 125.7 12.6 106 261-368 12-122 (123)
182 cd04037 C2E_Ferlin C2 domain f 99.6 4.2E-15 9.2E-20 128.9 9.1 119 445-564 1-122 (124)
183 cd00275 C2_PLC_like C2 domain 99.6 5.4E-14 1.2E-18 123.0 16.1 119 265-391 3-127 (128)
184 cd08383 C2A_RasGAP C2 domain ( 99.6 1.8E-14 4E-19 123.9 12.9 108 446-560 2-117 (117)
185 cd00276 C2B_Synaptotagmin C2 d 99.6 2.1E-15 4.6E-20 133.1 7.0 109 261-372 11-123 (134)
186 cd04032 C2_Perforin C2 domain 99.6 1.9E-14 4.1E-19 124.2 11.7 93 441-536 25-119 (127)
187 KOG1028 Ca2+-dependent phospho 99.6 3.7E-14 8.1E-19 147.3 15.4 122 442-563 165-296 (421)
188 cd04021 C2_E3_ubiquitin_ligase 99.6 7.2E-14 1.6E-18 121.3 14.1 111 444-558 2-124 (125)
189 cd04048 C2A_Copine C2 domain f 99.6 3.9E-14 8.4E-19 122.3 12.2 99 449-547 5-113 (120)
190 cd00275 C2_PLC_like C2 domain 99.5 1.2E-13 2.7E-18 120.7 14.5 114 444-560 2-127 (128)
191 PLN03200 cellulose synthase-in 99.5 2.7E-14 5.8E-19 167.7 11.5 121 261-393 1977-2101(2102)
192 cd08686 C2_ABR C2 domain in th 99.5 3.3E-13 7.1E-18 113.2 13.1 105 446-560 1-118 (118)
193 cd04047 C2B_Copine C2 domain s 99.5 2.1E-13 4.5E-18 115.8 12.0 89 270-360 6-101 (110)
194 PF00168 C2: C2 domain; Inter 99.5 2.9E-13 6.3E-18 108.9 10.0 85 266-351 1-85 (85)
195 cd04047 C2B_Copine C2 domain s 99.4 2E-12 4.4E-17 109.7 10.9 88 448-536 4-100 (110)
196 PF00168 C2: C2 domain; Inter 99.4 3.7E-12 7.9E-17 102.4 10.8 83 446-528 1-85 (85)
197 KOG1011 Neurotransmitter relea 99.4 1.2E-12 2.6E-17 133.8 8.6 122 262-392 293-424 (1283)
198 KOG1326 Membrane-associated pr 99.3 8.6E-13 1.9E-17 141.7 5.7 93 441-533 610-703 (1105)
199 PLN02270 phospholipase D alpha 99.3 1.7E-11 3.7E-16 132.6 14.5 129 262-397 6-153 (808)
200 smart00239 C2 Protein kinase C 99.3 2.5E-11 5.5E-16 100.5 11.6 95 266-361 2-96 (101)
201 cd08374 C2F_Ferlin C2 domain s 99.3 2E-11 4.3E-16 105.5 10.6 95 266-361 2-125 (133)
202 cd00030 C2 C2 domain. The C2 d 99.3 3.1E-11 6.7E-16 99.7 10.9 101 266-369 1-102 (102)
203 KOG1011 Neurotransmitter relea 99.3 7.5E-12 1.6E-16 128.1 8.0 113 441-558 292-421 (1283)
204 cd08374 C2F_Ferlin C2 domain s 99.2 4.1E-11 9E-16 103.5 10.2 94 446-539 2-126 (133)
205 PLN02270 phospholipase D alpha 99.2 8.6E-11 1.9E-15 127.2 13.8 123 442-566 6-153 (808)
206 cd00030 C2 C2 domain. The C2 d 99.2 1.5E-10 3.3E-15 95.6 10.9 100 446-546 1-102 (102)
207 KOG1326 Membrane-associated pr 99.2 5.1E-11 1.1E-15 128.3 9.4 293 265-561 614-1022(1105)
208 PLN02223 phosphoinositide phos 99.2 4E-10 8.7E-15 117.4 15.6 122 263-391 408-536 (537)
209 PF10296 DUF2404: Putative int 99.2 2.1E-10 4.5E-15 93.1 10.1 85 75-160 1-88 (91)
210 KOG2059 Ras GTPase-activating 99.2 7.9E-11 1.7E-15 122.7 9.3 120 444-565 5-129 (800)
211 smart00239 C2 Protein kinase C 99.2 3.2E-10 7E-15 93.8 11.3 94 446-539 2-97 (101)
212 PLN02952 phosphoinositide phos 99.1 1.8E-09 3.9E-14 115.1 15.1 106 263-372 469-582 (599)
213 KOG1328 Synaptic vesicle prote 99.1 2.1E-11 4.6E-16 126.6 0.5 129 262-394 112-303 (1103)
214 PLN02223 phosphoinositide phos 99.1 1.8E-09 3.9E-14 112.6 14.1 115 443-560 408-536 (537)
215 PLN02230 phosphoinositide phos 99.0 6.9E-09 1.5E-13 110.4 14.4 122 263-391 468-597 (598)
216 cd08689 C2_fungal_Pkc1p C2 dom 99.0 2.1E-09 4.5E-14 87.0 7.6 85 266-359 1-88 (109)
217 PLN02952 phosphoinositide phos 98.9 1.1E-08 2.3E-13 109.3 14.0 115 443-560 469-598 (599)
218 PLN02228 Phosphoinositide phos 98.9 1.2E-08 2.7E-13 108.1 14.3 122 443-567 430-567 (567)
219 PLN02222 phosphoinositide phos 98.9 1.9E-08 4.2E-13 106.9 15.4 122 263-391 451-580 (581)
220 PLN02228 Phosphoinositide phos 98.9 2.2E-08 4.7E-13 106.3 15.6 124 263-393 430-562 (567)
221 KOG1327 Copine [Signal transdu 98.9 1.1E-08 2.3E-13 105.9 12.7 183 300-536 42-236 (529)
222 PLN02230 phosphoinositide phos 98.9 1.4E-08 3.1E-13 108.1 12.8 115 443-560 468-597 (598)
223 cd08689 C2_fungal_Pkc1p C2 dom 98.9 8.9E-09 1.9E-13 83.4 8.2 85 446-536 1-88 (109)
224 KOG0169 Phosphoinositide-speci 98.9 1.5E-08 3.3E-13 107.7 12.2 121 265-392 617-744 (746)
225 PLN02222 phosphoinositide phos 98.8 3.3E-08 7.2E-13 105.1 13.8 115 443-560 451-580 (581)
226 KOG0169 Phosphoinositide-speci 98.8 3E-08 6.5E-13 105.6 11.4 115 445-562 617-745 (746)
227 KOG1031 Predicted Ca2+-depende 98.8 2.1E-08 4.5E-13 102.2 9.6 122 264-394 3-138 (1169)
228 PLN02352 phospholipase D epsil 98.8 5.6E-08 1.2E-12 105.5 12.4 122 262-397 8-135 (758)
229 PLN02352 phospholipase D epsil 98.8 7.4E-08 1.6E-12 104.6 13.0 119 441-567 7-136 (758)
230 KOG1328 Synaptic vesicle prote 98.7 5.4E-09 1.2E-13 109.1 3.1 98 261-359 944-1049(1103)
231 KOG0905 Phosphoinositide 3-kin 98.7 1.7E-08 3.8E-13 110.4 6.3 107 443-549 1523-1636(1639)
232 KOG1264 Phospholipase C [Lipid 98.6 8.4E-08 1.8E-12 101.5 9.2 117 443-563 1064-1191(1267)
233 KOG1264 Phospholipase C [Lipid 98.6 1.3E-07 2.9E-12 100.0 10.6 125 264-396 1065-1193(1267)
234 KOG1031 Predicted Ca2+-depende 98.6 1.1E-07 2.4E-12 97.0 9.5 115 443-559 2-134 (1169)
235 KOG0905 Phosphoinositide 3-kin 98.4 2.1E-07 4.5E-12 102.2 4.3 108 262-370 1522-1634(1639)
236 cd08683 C2_C2cd3 C2 domain fou 98.2 1.9E-06 4.1E-11 72.1 5.0 101 446-546 1-143 (143)
237 KOG3532 Predicted protein kina 98.1 1.7E-05 3.8E-10 82.9 10.3 229 58-295 81-358 (1051)
238 KOG1013 Synaptic vesicle prote 98.0 8.2E-06 1.8E-10 78.9 5.0 90 262-352 231-324 (362)
239 PF12416 DUF3668: Cep120 prote 98.0 0.0012 2.6E-08 66.5 20.4 258 266-538 2-297 (340)
240 cd08684 C2A_Tac2-N C2 domain f 97.9 1.2E-05 2.6E-10 62.4 3.8 97 447-545 2-102 (103)
241 PLN02964 phosphatidylserine de 97.9 2E-05 4.3E-10 85.5 6.8 88 261-359 51-139 (644)
242 cd08684 C2A_Tac2-N C2 domain f 97.8 1.6E-05 3.4E-10 61.7 3.4 97 267-367 2-101 (103)
243 KOG2060 Rab3 effector RIM1 and 97.7 5.6E-05 1.2E-09 74.5 5.4 108 441-549 266-380 (405)
244 cd08683 C2_C2cd3 C2 domain fou 97.7 7.2E-05 1.6E-09 62.8 5.1 104 266-369 1-143 (143)
245 KOG3837 Uncharacterized conser 97.6 6.5E-05 1.4E-09 74.6 4.7 125 263-392 366-503 (523)
246 KOG3837 Uncharacterized conser 97.6 7.1E-05 1.5E-09 74.4 4.5 121 442-562 365-504 (523)
247 KOG2060 Rab3 effector RIM1 and 97.4 9.6E-05 2.1E-09 72.9 3.1 112 260-373 265-381 (405)
248 PLN02964 phosphatidylserine de 97.3 0.00038 8.3E-09 75.7 6.4 90 441-538 51-141 (644)
249 PF15627 CEP76-C2: CEP76 C2 do 97.2 0.0064 1.4E-07 53.8 11.7 124 441-564 6-153 (156)
250 KOG1327 Copine [Signal transdu 97.1 0.0008 1.7E-08 70.4 6.6 88 270-359 142-236 (529)
251 PF10358 NT-C2: N-terminal C2 96.6 0.11 2.3E-06 45.9 15.0 120 443-566 6-140 (143)
252 PF15627 CEP76-C2: CEP76 C2 do 96.5 0.043 9.3E-07 48.6 11.3 128 263-394 8-152 (156)
253 PF10358 NT-C2: N-terminal C2 95.7 0.81 1.7E-05 40.3 16.0 119 264-395 7-138 (143)
254 cd08398 C2_PI3K_class_I_alpha 95.5 0.36 7.8E-06 43.4 12.8 90 264-357 8-106 (158)
255 cd08693 C2_PI3K_class_I_beta_d 95.5 0.11 2.4E-06 47.5 9.6 89 444-534 8-120 (173)
256 PF12416 DUF3668: Cep120 prote 95.4 0.25 5.5E-06 50.0 12.6 115 446-565 2-136 (340)
257 cd08398 C2_PI3K_class_I_alpha 95.3 0.14 3E-06 46.0 9.4 87 444-534 8-106 (158)
258 KOG1265 Phospholipase C [Lipid 95.1 0.051 1.1E-06 59.6 7.0 91 262-361 701-798 (1189)
259 KOG1265 Phospholipase C [Lipid 95.0 0.052 1.1E-06 59.5 6.8 91 440-537 699-797 (1189)
260 cd08693 C2_PI3K_class_I_beta_d 94.9 0.18 4E-06 46.1 9.2 91 264-356 8-119 (173)
261 cd08380 C2_PI3K_like C2 domain 94.1 0.33 7.2E-06 43.6 9.0 91 265-357 9-107 (156)
262 cd08687 C2_PKN-like C2 domain 94.1 0.61 1.3E-05 37.1 8.9 84 285-391 9-92 (98)
263 cd08380 C2_PI3K_like C2 domain 93.9 0.39 8.5E-06 43.1 9.1 90 444-534 8-107 (156)
264 cd08687 C2_PKN-like C2 domain 93.9 0.54 1.2E-05 37.3 8.3 84 465-560 9-92 (98)
265 KOG1452 Predicted Rho GTPase-a 93.6 0.13 2.8E-06 50.0 5.5 118 261-392 48-167 (442)
266 cd08397 C2_PI3K_class_III C2 d 93.6 0.33 7.3E-06 43.6 7.9 72 463-534 28-107 (159)
267 cd04012 C2A_PI3K_class_II C2 d 93.5 0.33 7.2E-06 44.3 7.9 92 443-534 7-119 (171)
268 cd08399 C2_PI3K_class_I_gamma 93.4 0.87 1.9E-05 41.7 10.3 90 444-534 10-122 (178)
269 KOG1452 Predicted Rho GTPase-a 93.2 0.13 2.7E-06 50.0 4.7 115 441-561 48-167 (442)
270 cd08397 C2_PI3K_class_III C2 d 93.2 0.4 8.6E-06 43.2 7.7 74 283-357 28-107 (159)
271 cd08694 C2_Dock-A C2 domains f 93.0 1.4 2.9E-05 40.8 10.8 56 300-355 54-114 (196)
272 cd04012 C2A_PI3K_class_II C2 d 92.6 0.47 1E-05 43.4 7.4 93 264-357 8-119 (171)
273 PF00792 PI3K_C2: Phosphoinosi 92.2 1.8 3.9E-05 38.2 10.5 54 481-534 23-85 (142)
274 cd08399 C2_PI3K_class_I_gamma 91.2 1.6 3.5E-05 40.0 9.1 73 265-339 11-89 (178)
275 cd08695 C2_Dock-B C2 domains f 90.7 1.6 3.6E-05 40.1 8.8 56 300-355 54-112 (189)
276 PF00792 PI3K_C2: Phosphoinosi 89.6 1.8 3.9E-05 38.2 8.0 55 302-357 23-85 (142)
277 PF14429 DOCK-C2: C2 domain in 89.0 2.1 4.5E-05 39.6 8.3 57 300-356 60-120 (184)
278 PF15625 CC2D2AN-C2: CC2D2A N- 89.0 7.1 0.00015 35.5 11.6 97 466-564 38-164 (168)
279 smart00142 PI3K_C2 Phosphoinos 88.6 3 6.6E-05 34.2 8.1 73 446-518 13-92 (100)
280 KOG1329 Phospholipase D1 [Lipi 88.0 1.2 2.5E-05 49.9 6.7 106 285-396 138-244 (887)
281 cd08695 C2_Dock-B C2 domains f 85.7 7.8 0.00017 35.8 9.8 55 479-533 54-113 (189)
282 PF15625 CC2D2AN-C2: CC2D2A N- 84.9 20 0.00042 32.6 12.1 104 284-392 36-161 (168)
283 PF01102 Glycophorin_A: Glycop 84.7 0.94 2E-05 38.5 3.1 29 4-32 66-94 (122)
284 cd08697 C2_Dock-D C2 domains f 84.4 12 0.00025 34.6 10.2 39 300-338 57-97 (185)
285 PF11618 DUF3250: Protein of u 84.3 5.1 0.00011 33.3 7.2 83 478-561 11-105 (107)
286 smart00142 PI3K_C2 Phosphoinos 83.7 5.4 0.00012 32.7 7.2 74 266-339 13-92 (100)
287 cd08694 C2_Dock-A C2 domains f 83.4 12 0.00026 34.7 9.9 55 478-532 53-114 (196)
288 PF14429 DOCK-C2: C2 domain in 83.0 6.9 0.00015 36.1 8.5 56 478-533 59-120 (184)
289 cd08679 C2_DOCK180_related C2 80.0 6.1 0.00013 36.3 6.9 56 300-356 54-115 (178)
290 cd08696 C2_Dock-C C2 domains f 79.3 6.5 0.00014 36.0 6.7 57 299-355 54-117 (179)
291 PTZ00447 apical membrane antig 78.2 25 0.00054 35.1 10.6 109 442-558 56-170 (508)
292 PF11618 DUF3250: Protein of u 77.4 10 0.00022 31.6 6.7 87 298-392 10-105 (107)
293 KOG1329 Phospholipase D1 [Lipi 76.0 3.5 7.6E-05 46.3 4.6 101 465-567 138-246 (887)
294 KOG2238 Uncharacterized conser 69.7 1.5 3.2E-05 48.3 -0.0 90 69-159 334-426 (795)
295 PF12732 YtxH: YtxH-like prote 61.4 13 0.00029 28.4 3.9 21 3-23 1-21 (74)
296 KOG0694 Serine/threonine prote 60.9 2 4.4E-05 46.7 -1.0 81 284-369 27-108 (694)
297 PF15179 Myc_target_1: Myc tar 58.5 7.8 0.00017 34.9 2.4 24 1-24 23-46 (197)
298 PF06295 DUF1043: Protein of u 57.7 14 0.00031 31.8 3.9 20 4-23 3-22 (128)
299 PF06305 DUF1049: Protein of u 57.2 28 0.00061 25.9 5.1 17 4-20 25-41 (68)
300 cd08696 C2_Dock-C C2 domains f 55.1 31 0.00068 31.6 5.8 56 478-533 54-118 (179)
301 cd08679 C2_DOCK180_related C2 55.1 26 0.00056 32.1 5.4 50 484-533 58-115 (178)
302 CHL00008 petG cytochrome b6/f 52.1 22 0.00048 22.8 2.9 21 2-23 4-28 (37)
303 PRK00665 petG cytochrome b6-f 51.5 22 0.00049 22.8 2.9 21 2-23 4-28 (37)
304 PF02529 PetG: Cytochrome B6-F 49.3 25 0.00054 22.7 2.9 16 2-17 4-23 (37)
305 PF01102 Glycophorin_A: Glycop 47.8 18 0.00039 30.8 2.8 30 2-31 68-97 (122)
306 cd08697 C2_Dock-D C2 domains f 46.8 56 0.0012 30.1 6.1 56 478-533 56-123 (185)
307 PF06305 DUF1049: Protein of u 45.7 40 0.00086 25.1 4.2 11 5-15 30-40 (68)
308 KOG0694 Serine/threonine prote 42.2 8 0.00017 42.3 -0.2 92 464-560 27-120 (694)
309 KOG4027 Uncharacterized conser 39.8 1.8E+02 0.0038 25.9 7.6 48 308-356 59-110 (187)
310 COG4064 MtrG Tetrahydromethano 39.7 29 0.00062 25.9 2.4 15 2-16 51-65 (75)
311 PRK11677 hypothetical protein; 39.0 38 0.00083 29.4 3.5 16 4-19 7-22 (134)
312 PTZ00447 apical membrane antig 37.2 4.4E+02 0.0095 26.7 10.8 109 265-390 59-171 (508)
313 COG4943 Predicted signal trans 36.8 41 0.00089 35.5 3.9 37 3-39 241-277 (524)
314 PF14356 DUF4403: Domain of un 36.5 4.7E+02 0.01 27.6 12.1 87 119-244 280-367 (427)
315 KOG4092 Mitochondrial F1F0-ATP 35.1 22 0.00047 28.3 1.3 35 56-90 36-70 (108)
316 KOG4269 Rac GTPase-activating 35.1 24 0.00052 39.8 2.0 71 262-339 757-829 (1112)
317 COG3887 Predicted signaling pr 34.0 87 0.0019 34.1 5.8 44 58-103 83-127 (655)
318 PF04210 MtrG: Tetrahydrometha 33.4 36 0.00078 25.5 2.1 15 6-20 48-62 (70)
319 cd05137 RasGAP_CLA2_BUD2 CLA2/ 33.3 52 0.0011 34.3 4.2 43 346-392 1-44 (395)
320 KOG4269 Rac GTPase-activating 32.9 25 0.00053 39.7 1.7 70 441-517 756-828 (1112)
321 PF13373 DUF2407_C: DUF2407 C- 32.6 36 0.00077 29.9 2.4 22 2-23 91-112 (140)
322 PF01034 Syndecan: Syndecan do 32.3 13 0.00028 27.4 -0.3 16 4-19 15-30 (64)
323 PF07162 B9-C2: Ciliary basal 30.9 4E+02 0.0086 24.0 11.6 83 268-357 6-104 (168)
324 PF14186 Aida_C2: Cytoskeletal 30.9 3.8E+02 0.0082 23.7 9.4 93 265-360 14-115 (147)
325 PF14023 DUF4239: Protein of u 30.7 2.8E+02 0.006 25.9 8.4 25 4-28 4-28 (209)
326 PF15145 DUF4577: Domain of un 30.5 92 0.002 25.7 4.1 23 2-24 62-84 (128)
327 PF10409 PTEN_C2: C2 domain of 29.8 3.5E+02 0.0076 23.0 9.6 90 444-535 4-98 (134)
328 PF04210 MtrG: Tetrahydrometha 29.8 53 0.0012 24.7 2.5 18 2-19 48-65 (70)
329 TIGR02976 phageshock_pspB phag 29.7 45 0.00097 25.7 2.2 15 12-26 14-28 (75)
330 PF04971 Lysis_S: Lysis protei 29.7 77 0.0017 23.8 3.3 16 5-20 36-51 (68)
331 TIGR01149 mtrG N5-methyltetrah 29.1 54 0.0012 24.6 2.4 11 3-13 49-59 (70)
332 PF15102 TMEM154: TMEM154 prot 28.7 14 0.0003 32.3 -0.8 6 72-77 132-137 (146)
333 COG4980 GvpP Gas vesicle prote 27.9 55 0.0012 27.5 2.6 21 2-22 6-26 (115)
334 PF14186 Aida_C2: Cytoskeletal 26.7 4.5E+02 0.0097 23.3 10.9 94 441-537 10-115 (147)
335 PRK09458 pspB phage shock prot 26.6 45 0.00099 25.6 1.7 7 20-26 22-28 (75)
336 PF11044 TMEMspv1-c74-12: Plec 26.6 1.7E+02 0.0036 19.9 4.1 19 1-19 1-19 (49)
337 PF06667 PspB: Phage shock pro 26.5 58 0.0013 25.1 2.3 6 21-26 23-28 (75)
338 PF05393 Hum_adeno_E3A: Human 25.2 62 0.0014 25.5 2.3 10 4-13 36-45 (94)
339 PF12597 DUF3767: Protein of u 24.4 1.5E+02 0.0033 25.1 4.7 15 2-16 43-57 (118)
340 PRK01026 tetrahydromethanopter 24.1 89 0.0019 24.1 2.9 15 2-16 51-65 (77)
341 PF14316 DUF4381: Domain of un 23.8 2E+02 0.0044 25.2 5.7 6 72-77 97-102 (146)
342 PF14851 FAM176: FAM176 family 23.7 47 0.001 29.5 1.5 22 3-24 26-47 (153)
343 COG2851 CitM H+/citrate sympor 23.6 1.1E+02 0.0024 31.4 4.3 30 4-33 175-204 (433)
344 PF03229 Alpha_GJ: Alphavirus 22.4 1.3E+02 0.0029 25.1 3.7 31 3-33 84-114 (126)
345 KOG2419 Phosphatidylserine dec 22.0 23 0.0005 38.4 -0.8 73 263-339 279-356 (975)
346 COG3105 Uncharacterized protei 20.6 1.7E+02 0.0037 25.1 4.1 49 4-52 12-60 (138)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=9.4e-59 Score=497.64 Aligned_cols=451 Identities=24% Similarity=0.430 Sum_probs=381.6
Q ss_pred CCccchHHHHHHHHhHhHhHHHHHHHHHHHhHHHHHhhcCCCCcceEEEeEEecCCCCCeEeEEEEEeccCCCceeEEEE
Q 008305 66 QQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQYRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMEL 145 (570)
Q Consensus 66 ~~~E~~eWlN~~l~~~Wp~~~~~~~~~~~~~~~~~l~~~~p~~l~~i~~~~~~lG~~pP~i~~i~~~~~~~~~~~~~~d~ 145 (570)
-|+|++||||.+|+++||.+++.+++.+.+++|+.|+++.|+||+++.+.+||||++||||.+||.|+.+ +.|.+.||+
T Consensus 218 nd~ESveWLNtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~t-e~dtv~mD~ 296 (1227)
T COG5038 218 NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPST-ESDTVVMDV 296 (1227)
T ss_pred cchhHHHHHHHHHHhheeccChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCC-CCceEEEEe
Confidence 4789999999999999999999999999999999999999999999999999999999999999999997 889999999
Q ss_pred EEEEcC---------------CCcEEEEEee--eee-eeeeEEEEEEEEEEEEEEEeeeCCCCCCcccEEEEEeccCcce
Q 008305 146 EMQWDG---------------NPNIVLDIRT--RVG-VGLPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVAYSLREKKDL 207 (570)
Q Consensus 146 ~~~~~~---------------~~~i~l~~~~--~~g-~~~~v~v~~~~~~g~lrv~l~pl~~~~P~~~~~~~~f~~~P~i 207 (570)
++++.- ++.|.|.++. .+| +++||.|+++.|.|++|++++ |++.+|++..++++|++.|.+
T Consensus 297 ~~sftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~ 375 (1227)
T COG5038 297 DFSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEF 375 (1227)
T ss_pred eeccCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcce
Confidence 999963 3456777753 345 789999999999999999999 999999999999999999999
Q ss_pred eEEEEEec-----cccccCcchHHHHHHHHHHHHHhhccccceeeEecC---CCCCCCcccCCceEEEEEEEEecCCCCC
Q 008305 208 DFTLKVVG-----GDISSIPGISDAIEETIIDAIEDSITWPVRQIIPIL---PGDYSDLELKPCGTLDVKLVQAKELTNK 279 (570)
Q Consensus 208 d~~l~~~g-----~~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~~~~~---~~~~~~~~~~~~G~L~V~V~~A~~L~~~ 279 (570)
||.++++| .||++||||+.|++++|...++.|+++|+.+++++. .++ ...+.|+|.|+|.+|++|...
T Consensus 376 df~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~----s~~aIGVv~vkI~sa~~lk~~ 451 (1227)
T COG5038 376 DFILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGD----SGTAIGVVEVKIKSAEGLKKS 451 (1227)
T ss_pred eEEEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccc----cCCeeEEEEEEEeeccCcccc
Confidence 99999986 589999999999999999999999999999999874 332 346899999999999999998
Q ss_pred C--CCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEcccc
Q 008305 280 D--LIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKEL 357 (570)
Q Consensus 280 ~--~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l 357 (570)
+ ..+..|||+.+... +....+|++++++.||+|||+|++.+... ++.|.++|||.+.. ..|+.+|++.++|..|
T Consensus 452 d~~i~~~vDpyit~~~~--~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~-~sd~vvG~~~l~L~~L 527 (1227)
T COG5038 452 DSTINGTVDPYITVTFS--DRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSF-KSDKVVGSTQLDLALL 527 (1227)
T ss_pred cccccCCCCceEEEEec--cccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecccc-CCcceeeeEEechHHh
Confidence 8 56899999999976 34456999999999999999999998854 57999999998888 8999999999999999
Q ss_pred CCCeee-EEEEEeeccccccCCCcceeEEEEEEEEEeccCCCCCCCCCCCCccchhhhhhhcccCchhhhhhcccccccc
Q 008305 358 EPGKVK-DVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSETSRAEAAELGKIATQK 436 (570)
Q Consensus 358 ~~~~~~-~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (570)
...... +.-+.+ ....+..|+|+..+.|+|............ +
T Consensus 528 ~~~~~~~ne~~e~------~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~-------------e----------------- 571 (1227)
T COG5038 528 HQNPVKKNELYEF------LRNTKNVGRLTYDLRFFPVIEDKKELKGSV-------------E----------------- 571 (1227)
T ss_pred hhccccccceeee------eccCccceEEEEeeeeecccCCcccccccc-------------C-----------------
Confidence 765433 223443 346789999999999999755432211100 0
Q ss_pred CCCcccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEEC
Q 008305 437 KSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDH 516 (570)
Q Consensus 437 ~~~~~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~ 516 (570)
..+....|++.+++.++++|..... .....+++++++. +....|+.++.+.+|.||+.+...+.+.....+.+.++|.
T Consensus 572 ~~ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~-keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~ 649 (1227)
T COG5038 572 PLEDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNA-KEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDV 649 (1227)
T ss_pred CcccCCcceeEEEeeccccccCccc-cccceeEEEEecc-eEEeccceeeeccCCceeeecceEeccCcceeEEEEeccc
Confidence 0011346999999999999976432 1223348888874 5677889999999999999999999988889999999998
Q ss_pred CCCCCceeEEEEEeccccccCc-eEEEEEEecCCCCeEEEEEEEEEecCCCC
Q 008305 517 DTFGKDKMGKCIMTLTRVMMEG-EIQDSFHIDGTKSGKLFLNLKWTPQLVLR 567 (570)
Q Consensus 517 ~~~~~d~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~G~i~l~~~~~p~~~~~ 567 (570)
. ..+.+|+...+|.++.... ....||++. .++|+|.+..-|+|.+.-.
T Consensus 650 ~--~g~~i~~~~~~l~~li~~t~dt~~~f~~~-~~kg~I~~t~~W~Pi~~~~ 698 (1227)
T COG5038 650 Q--SGKVIATEGSTLPDLIDRTLDTFLVFPLR-NPKGRIFITNYWKPIYNAG 698 (1227)
T ss_pred c--cCceeccccccchHhhhccccceEEEEcC-CCcceEEEEeccceeeccc
Confidence 6 3578888888888887554 457899999 6679999999999998744
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.8e-30 Score=264.31 Aligned_cols=224 Identities=33% Similarity=0.506 Sum_probs=193.7
Q ss_pred ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEEEe
Q 008305 259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRVFD 336 (570)
Q Consensus 259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v~d 336 (570)
|......|.|+|++|++|+..+..|.+||||++++.|....+.+|++.++++||.|||+|.|.+.. ...+.|.+.|||
T Consensus 162 Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~ 241 (421)
T KOG1028|consen 162 YDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYD 241 (421)
T ss_pred ecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEe
Confidence 445678899999999999999966889999999999888788999999999999999999999642 456789999999
Q ss_pred CCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEeccCCCCCCCCCCCCccchhhhhh
Q 008305 337 DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKS 416 (570)
Q Consensus 337 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 416 (570)
+|++ +++++||++.++|..+........|.++...... .....|+|.++++|.|.
T Consensus 242 ~drf-sr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~--~~~~~gel~~sL~Y~p~---------------------- 296 (421)
T KOG1028|consen 242 FDRF-SRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTD--SEELAGELLLSLCYLPT---------------------- 296 (421)
T ss_pred cCCc-ccccEEEEEEecCccccccccceeeeccccccCC--cccccceEEEEEEeecC----------------------
Confidence 9999 9999999999999999877667889999765432 22223899999999852
Q ss_pred hcccCchhhhhhccccccccCCCcccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---ceEeCcccCCCCCCee
Q 008305 417 LKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVW 493 (570)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w 493 (570)
.|.|+|.|.+|+||...+..+.+||||++++..+. .++||.+++++.||+|
T Consensus 297 --------------------------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~ 350 (421)
T KOG1028|consen 297 --------------------------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVF 350 (421)
T ss_pred --------------------------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcc
Confidence 59999999999999999999999999999985432 4689999999999999
Q ss_pred eeEEEEEee--cCCCcEEEEEEEECCCCCC-ceeEEEEEeccc
Q 008305 494 NQTFDFVVE--DGQHEMLILDVYDHDTFGK-DKMGKCIMTLTR 533 (570)
Q Consensus 494 ~e~f~f~v~--~~~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~ 533 (570)
||+|.|.+. ...+..|.|+|||++..+. ++||++.+....
T Consensus 351 nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 351 NETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred cccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 999999886 3345679999999999977 699999998875
No 3
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.90 E-value=3.2e-23 Score=213.24 Aligned_cols=250 Identities=23% Similarity=0.340 Sum_probs=200.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCC
Q 008305 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLA 343 (570)
Q Consensus 264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~ 343 (570)
..|.|+|.+|+||++.+..|.+||||.+.++ .....||.++.+++.|-|.|+|+|.+... -+.|.|.|||.| . ++
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD--~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~-~~ 79 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD--QEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-L-KR 79 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeec--chhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-c-cc
Confidence 3689999999999999999999999999998 45689999999999999999999998743 468999999999 6 89
Q ss_pred CceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEeccCCCCCCCCCCCCccchhhhhhhcccCch
Q 008305 344 PEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSETSR 423 (570)
Q Consensus 344 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (570)
|+.||.+.|.=++|......+.|+.|.+- +.+....|+|++++.+.+...
T Consensus 80 D~~IGKvai~re~l~~~~~~d~W~~L~~V---D~dsEVQG~v~l~l~~~e~~~--------------------------- 129 (800)
T KOG2059|consen 80 DDIIGKVAIKREDLHMYPGKDTWFSLQPV---DPDSEVQGKVHLELALTEAIQ--------------------------- 129 (800)
T ss_pred ccccceeeeeHHHHhhCCCCccceecccc---CCChhhceeEEEEEEeccccC---------------------------
Confidence 99999999999999877778999999642 446678999999999864211
Q ss_pred hhhhhccccccccCCCcccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--ceEeCcccCCCCCCeeeeEEEEEe
Q 008305 424 AEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG--NRAKTRVAHDTLNPVWNQTFDFVV 501 (570)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~--~~~kT~v~~~t~nP~w~e~f~f~v 501 (570)
..-+...+.+++++.+.. ++.+|||+++...++. ...+|.++++|.+|.|+|.|.|.+
T Consensus 130 -------------------~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~ 189 (800)
T KOG2059|consen 130 -------------------SSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEV 189 (800)
T ss_pred -------------------CCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeee
Confidence 112233344444554444 3559999999986432 246899999999999999999988
Q ss_pred ecC---------------CCcEEEEEEEEC-CCCC-CceeEEEEEeccccccCceEEEEEEecC----------CCCeEE
Q 008305 502 EDG---------------QHEMLILDVYDH-DTFG-KDKMGKCIMTLTRVMMEGEIQDSFHIDG----------TKSGKL 554 (570)
Q Consensus 502 ~~~---------------~~~~L~i~V~d~-~~~~-~d~lG~~~i~l~~l~~~~~~~~w~~L~~----------~~~G~i 554 (570)
... ..-.|.+++|++ +... ++|+|++.+++...........||-|.. ..-|.+
T Consensus 190 ~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGsl 269 (800)
T KOG2059|consen 190 TREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSL 269 (800)
T ss_pred ccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccce
Confidence 533 233588899984 4443 4699999999999987778889999943 235889
Q ss_pred EEEEEEEecCCCCC
Q 008305 555 FLNLKWTPQLVLRD 568 (570)
Q Consensus 555 ~l~~~~~p~~~~~~ 568 (570)
++.+.|....+++.
T Consensus 270 rl~v~y~~D~Vlps 283 (800)
T KOG2059|consen 270 RLNVTYTEDHVLPS 283 (800)
T ss_pred eeeEEeeeceeccH
Confidence 99999998888764
No 4
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.89 E-value=3.1e-22 Score=171.21 Aligned_cols=119 Identities=25% Similarity=0.449 Sum_probs=103.3
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCC-CCCCeeecEEEEEEecCCCCeEEEEEEeCCCCC
Q 008305 263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINN-ELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPM 341 (570)
Q Consensus 263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~-t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~ 341 (570)
.|.|+|+|++|++++..+ .|++||||++.++ +++.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.+
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg---~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~- 74 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVG---HAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAF- 74 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEEC---CEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCC-
Confidence 489999999999998777 7999999999997 56789999865 79999999999999754 46899999999999
Q ss_pred CCCceEEEEEEEcc-ccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305 342 LAPEIIGIAQIALK-ELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY 391 (570)
Q Consensus 342 ~~d~~lG~~~i~l~-~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 391 (570)
++|++||++.+++. .+..+...+.|++|.+.. .....|+|+++++|
T Consensus 75 ~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~----~~~~~g~i~l~l~y 121 (121)
T cd04016 75 TMDERIAWTHITIPESVFNGETLDDWYSLSGKQ----GEDKEGMINLVFSY 121 (121)
T ss_pred cCCceEEEEEEECchhccCCCCccccEeCcCcc----CCCCceEEEEEEeC
Confidence 89999999999996 577777789999996532 34578999999987
No 5
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.87 E-value=2.8e-20 Score=201.99 Aligned_cols=340 Identities=25% Similarity=0.375 Sum_probs=238.6
Q ss_pred cchHHHHHHHHHHHHHhhccccce-------eeE---ecC--CCCCCC-cccCCceEEEEEEEEecCCCCCCCCCCCCcE
Q 008305 222 PGISDAIEETIIDAIEDSITWPVR-------QII---PIL--PGDYSD-LELKPCGTLDVKLVQAKELTNKDLIGKSDPF 288 (570)
Q Consensus 222 P~l~~~i~~~i~~~i~~~~v~P~~-------~~~---~~~--~~~~~~-~~~~~~G~L~V~V~~A~~L~~~~~~g~~dpy 288 (570)
+....-+...|.......++.|.+ ++. |+. .+..+. .+..+.|.++|+|..|.+|.+....+.+|||
T Consensus 656 ~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPy 735 (1227)
T COG5038 656 ATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPY 735 (1227)
T ss_pred ccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccc
Confidence 444455567777777777777775 222 432 121222 2457999999999999999988788999999
Q ss_pred EEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeEE-EE
Q 008305 289 VVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDV-WL 367 (570)
Q Consensus 289 v~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~-w~ 367 (570)
+.+.+. +..++||-....++||.|||..+..+..+ .+.+.++++|+... +.|..+|++.++++++........ ..
T Consensus 736 a~v~~n--~~~k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~s-gddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 736 ATVLVN--NLVKYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEES-GDDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred eEEEec--ceeEEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhc-cccceeceeeeeeeeeeecCCCcceEE
Confidence 999998 35678999899999999999999998865 46899999999998 999999999999999865211111 11
Q ss_pred Ee-----eccccccCCCcceeEEEEEEEEEeccCCCCCC-------------------------CCCCCC--------cc
Q 008305 368 KL-----VKDVKVQRDTKNRGQVHLELLYCPFGTESSLK-------------------------NPFNSD--------YS 409 (570)
Q Consensus 368 ~L-----~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~-------------------------~~~~~~--------~~ 409 (570)
.. ..... ..+.+..|++.+.+.|+|.....+.+ .++..+ ..
T Consensus 812 ~i~g~~~t~~l~-~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~ 890 (1227)
T COG5038 812 TIDGAEETGKLS-LTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIE 890 (1227)
T ss_pred eecCcccccccc-cccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhccee
Confidence 11 11111 11456789999999999864322110 000000 00
Q ss_pred c---h---------hhhhhhcccCch------------------------------------------------------
Q 008305 410 L---T---------TLEKSLKSETSR------------------------------------------------------ 423 (570)
Q Consensus 410 ~---~---------~~~~~~~~~~~~------------------------------------------------------ 423 (570)
. . ++.++++.....
T Consensus 891 v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~ 970 (1227)
T COG5038 891 VEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEY 970 (1227)
T ss_pred eccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhcc
Confidence 0 0 011111100000
Q ss_pred --------hh-------------------hhhccc-cc---cc------------------cCCCcccceEEEEEEEEee
Q 008305 424 --------AE-------------------AAELGK-IA---TQ------------------KKSDVIVRGVLSITVIAAE 454 (570)
Q Consensus 424 --------~~-------------------~~~~~~-~~---~~------------------~~~~~~~~g~L~V~v~~a~ 454 (570)
.. ...++. .. .. .-.-...+|.|.|.+.+|.
T Consensus 971 s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~ 1050 (1227)
T COG5038 971 SETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGE 1050 (1227)
T ss_pred ceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccC
Confidence 00 000000 00 00 0001134889999999999
Q ss_pred cCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-ceeEEEEEeccc
Q 008305 455 NLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DKMGKCIMTLTR 533 (570)
Q Consensus 455 ~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~ 533 (570)
||+..+.+|.+||||++.+++ +..++|+++++|+||.|||.|.+++.+...+.+.+.|+|++...+ |.||.+.++|..
T Consensus 1051 nl~~~d~ng~sDpfv~~~ln~-k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~ 1129 (1227)
T COG5038 1051 NLPSSDENGYSDPFVKLFLNE-KSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSK 1129 (1227)
T ss_pred CCcccccCCCCCceEEEEecc-eecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhh
Confidence 999999999999999999985 458999999999999999999999987788899999999998866 799999999999
Q ss_pred cccCceEEEEEEecCCC----CeEEEEEEEEEecCCCC
Q 008305 534 VMMEGEIQDSFHIDGTK----SGKLFLNLKWTPQLVLR 567 (570)
Q Consensus 534 l~~~~~~~~w~~L~~~~----~G~i~l~~~~~p~~~~~ 567 (570)
+..+.......+|.+.. .|.++..+.|++.....
T Consensus 1130 l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~~~~~n 1167 (1227)
T COG5038 1130 LEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRSKYALN 1167 (1227)
T ss_pred cCcCCccceeeeccCcceEecccEeecceecchhhhhc
Confidence 99888887778887764 67888888888776654
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=8.5e-21 Score=165.52 Aligned_cols=119 Identities=23% Similarity=0.473 Sum_probs=102.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEec-----CCCCeEEEEEEeCCCC
Q 008305 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED-----ASTQHLTVRVFDDEGP 340 (570)
Q Consensus 266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~-----~~~~~L~~~v~d~d~~ 340 (570)
++|+|++|+||+..+..|.+||||+++++ +++++|+++++++||+|||+|.|.+.. ...+.|.++|||++..
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~---~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG---KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC---CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999888999999999997 567899999999999999999999976 3567899999999998
Q ss_pred CCCCceEEEEEEEccccC--CCeeeEEEEEeeccccccCCCcceeEEEEEEE
Q 008305 341 MLAPEIIGIAQIALKELE--PGKVKDVWLKLVKDVKVQRDTKNRGQVHLELL 390 (570)
Q Consensus 341 ~~~d~~lG~~~i~l~~l~--~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~ 390 (570)
++|++||++.++++++. .+.....|++|.+... +..+..|+|+++++
T Consensus 78 -~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~--~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 -GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG--KDDKERGEIEVDIQ 126 (126)
T ss_pred -CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC--CCccccceEEEEeC
Confidence 88999999999999997 5666789999975321 34567899999863
No 7
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.84 E-value=2e-20 Score=161.36 Aligned_cols=117 Identities=32% Similarity=0.528 Sum_probs=102.6
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeC-CCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCC
Q 008305 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTIN-NELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPML 342 (570)
Q Consensus 264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~ 342 (570)
|.|+|+|++|++|+..+..+.+||||+++++ ++.++|+++. ++.||+|||+|.|.+.....+.|.|+|||++.. +
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~ 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-K 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC-C
Confidence 7899999999999999988999999999997 4667888764 579999999999999876667899999999987 5
Q ss_pred CCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305 343 APEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY 391 (570)
Q Consensus 343 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 391 (570)
|++||++.++++++..+.....|++|.. .++..|+|+++++|
T Consensus 77 -~~~iG~~~~~l~~~~~~~~~~~w~~L~~------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 -PDLIGDTEVDLSPALKEGEFDDWYELTL------KGRYAGEVYLELTF 118 (118)
T ss_pred -CcceEEEEEecHHHhhcCCCCCcEEecc------CCcEeeEEEEEEEC
Confidence 9999999999999977666789999953 34689999999986
No 8
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.84 E-value=4.3e-20 Score=158.01 Aligned_cols=113 Identities=23% Similarity=0.486 Sum_probs=98.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCC-CCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-
Q 008305 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHD-TLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK- 521 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~- 521 (570)
|.|.|+|++|++++..+ .|.+||||++.+++ .++||+++.+ +.||+|||+|.|.+.+. ...|.|+|||++.+++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~--~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~d 77 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH--AVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMD 77 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECC--EEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCC
Confidence 78999999999998877 79999999999954 6779999876 79999999999999753 4679999999999876
Q ss_pred ceeEEEEEecc-ccccCceEEEEEEecC----CCCeEEEEEEEE
Q 008305 522 DKMGKCIMTLT-RVMMEGEIQDSFHIDG----TKSGKLFLNLKW 560 (570)
Q Consensus 522 d~lG~~~i~l~-~l~~~~~~~~w~~L~~----~~~G~i~l~~~~ 560 (570)
++||.+.+++. .+..+...+.||+|.+ ...|+|+++++|
T Consensus 78 d~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 78 ERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred ceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 69999999996 4666666899999976 457999999986
No 9
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.84 E-value=6.8e-20 Score=158.65 Aligned_cols=120 Identities=35% Similarity=0.561 Sum_probs=106.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCc
Q 008305 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE 345 (570)
Q Consensus 266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~ 345 (570)
|+|+|++|++|+..+..|.+||||+++++ +.+.++|+++.++.||+|||+|.|.+.+. .+.|.|+|||++.. ++|+
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~-~~~~ 77 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYG--GKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRG-LTDD 77 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEEC--CEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCC-CCCc
Confidence 78999999999999988999999999986 34578999999999999999999998765 47899999999998 8999
Q ss_pred eEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305 346 IIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCP 393 (570)
Q Consensus 346 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p 393 (570)
+||.+.++++++..+...+.|++|.+.. ..+..|+|++.++|.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~~----~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDPN----SDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCCC----CccCceEEEEEEEECC
Confidence 9999999999999888889999996432 2467999999999864
No 10
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.83 E-value=9.1e-20 Score=157.04 Aligned_cols=117 Identities=28% Similarity=0.417 Sum_probs=100.6
Q ss_pred EEEEEEEEecC---CCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCC
Q 008305 265 TLDVKLVQAKE---LTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPM 341 (570)
Q Consensus 265 ~L~V~V~~A~~---L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~ 341 (570)
.|.|+|++|++ |..+|..|.+||||+++++ .+..+|+++++++||+|||+|.|.+.++. ..|.|+|||++...
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g---~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG---PKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEEC---CEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence 38999999999 8888989999999999997 66789999999999999999999998755 48999999998851
Q ss_pred -----CCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEE
Q 008305 342 -----LAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHL 387 (570)
Q Consensus 342 -----~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l 387 (570)
.+|++||++.++++++..+...+.|++|.... .+..+..|+|+.
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN--PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC--CCCccCCcEEEe
Confidence 28999999999999999988889999997543 124567788764
No 11
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.83 E-value=1.4e-19 Score=159.24 Aligned_cols=119 Identities=25% Similarity=0.403 Sum_probs=103.7
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC
Q 008305 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP 340 (570)
Q Consensus 261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~ 340 (570)
...|.|+|+|++|++|+..+..|.+||||+++++ .+.++|++++++.||.|||+|.|.+.+...+.|.++|||++..
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~---~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~ 88 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG---SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF 88 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence 5789999999999999999988999999999986 6678999999999999999999999877778999999999988
Q ss_pred CCCCceEEEEEEEccccCC-----CeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305 341 MLAPEIIGIAQIALKELEP-----GKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY 391 (570)
Q Consensus 341 ~~~d~~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 391 (570)
++|++||++.+++.++.. ......|..+ ..+.+|+|++++.+
T Consensus 89 -~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~--------~~~~~g~i~l~~~~ 135 (136)
T cd08375 89 -SPDDFLGRTEIRVADILKETKESKGPITKRLLL--------HEVPTGEVVVKLDL 135 (136)
T ss_pred -CCCCeeEEEEEEHHHhccccccCCCcEEEEecc--------ccccceeEEEEEEe
Confidence 889999999999999975 2222344444 46788999999876
No 12
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.83 E-value=1.1e-19 Score=155.00 Aligned_cols=109 Identities=24% Similarity=0.404 Sum_probs=92.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEe----CCCceEEeeeeCCCCCCeeecEEEEEEec---CCCCeEEEEEEeC
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRP----LRDRMKTSKTINNELNPIWNEHFEFTVED---ASTQHLTVRVFDD 337 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~----~~~~~~~T~~~~~t~nP~Wne~f~f~v~~---~~~~~L~~~v~d~ 337 (570)
.|+|+|++|++|+..+ .|.+||||++++.. ...++++|+++.+++||+|||+|.|.+.. .....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999887 49999999999842 22346789999999999999999999974 3345799999999
Q ss_pred CCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccc
Q 008305 338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKV 375 (570)
Q Consensus 338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~ 375 (570)
+.. +.|++||++.+++.++..+.....|++|.+..++
T Consensus 80 d~~-~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~~ 116 (120)
T cd08395 80 CFA-RDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHM 116 (120)
T ss_pred ccc-CCCCEEEEEEEEHHHCcCCCcEEEEEECcCcccc
Confidence 977 7899999999999999988889999999765543
No 13
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=1.3e-19 Score=161.81 Aligned_cols=125 Identities=26% Similarity=0.405 Sum_probs=106.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCC-CCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCC
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINN-ELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLA 343 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~-t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~ 343 (570)
.|+|+|++|++|+..+..|.+||||+++++ ++..+|+++.+ ++||+|||+|.|.+.++..+.+.|+|+|++.. ++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~-~~ 76 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGP-NK 76 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCC-CC
Confidence 379999999999999989999999999997 57788998866 69999999999999876667999999999987 78
Q ss_pred CceEEEEEEEccccCCC----eeeEEEEEeeccccc---cCCCcceeEEEEEEEEEe
Q 008305 344 PEIIGIAQIALKELEPG----KVKDVWLKLVKDVKV---QRDTKNRGQVHLELLYCP 393 (570)
Q Consensus 344 d~~lG~~~i~l~~l~~~----~~~~~w~~L~~~~~~---~~~~~~~G~l~l~l~~~p 393 (570)
|++||++.++|+++..+ ...+.|++|.+..+. .+..+.+|+|++.++|.+
T Consensus 77 dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 77 DEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 99999999999999643 446899999865321 134577899999999963
No 14
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.82 E-value=2.4e-19 Score=154.14 Aligned_cols=115 Identities=30% Similarity=0.440 Sum_probs=103.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP 344 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d 344 (570)
+++|+|++|++|+..+..+.+||||+++++ ++.++|++++++.||.|||+|.|.+.+...+.|.++|||++.. ++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~-~~~ 76 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG---NEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTG-KKD 76 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEEC---CEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCC-CCC
Confidence 478999999999999988999999999996 5678999999999999999999999876678999999999998 899
Q ss_pred ceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305 345 EIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC 392 (570)
Q Consensus 345 ~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 392 (570)
++||++.++++++..+...+.|++|.+ ..|+|++.+.|.
T Consensus 77 ~~iG~~~~~l~~l~~~~~~~~w~~L~~---------~~G~~~~~~~~~ 115 (116)
T cd08376 77 EFIGRCEIDLSALPREQTHSLELELED---------GEGSLLLLLTLT 115 (116)
T ss_pred CeEEEEEEeHHHCCCCCceEEEEEccC---------CCcEEEEEEEec
Confidence 999999999999998888999999942 259999998873
No 15
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.82 E-value=2.2e-19 Score=154.95 Aligned_cols=116 Identities=28% Similarity=0.538 Sum_probs=102.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCc
Q 008305 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE 345 (570)
Q Consensus 266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~ 345 (570)
|.|+|++|++|+..+..+.+||||++++.+.+...++|++++++.||+|||+|.|.+.....+.|.|+|||++.. +|+
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~--~~~ 79 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV--MDD 79 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC--CCc
Confidence 789999999999998888999999999975445678999999999999999999999766567899999999986 789
Q ss_pred eEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305 346 IIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY 391 (570)
Q Consensus 346 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 391 (570)
+||++.++++++..+.....|++|. .+..|++++++.+
T Consensus 80 ~iG~~~~~l~~l~~g~~~~~~~~L~--------~~~~g~l~~~~~~ 117 (119)
T cd04036 80 HLGTVLFDVSKLKLGEKVRVTFSLN--------PQGKEELEVEFLL 117 (119)
T ss_pred ccEEEEEEHHHCCCCCcEEEEEECC--------CCCCceEEEEEEe
Confidence 9999999999999988899999993 2458888888765
No 16
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.82 E-value=2e-19 Score=157.53 Aligned_cols=123 Identities=33% Similarity=0.532 Sum_probs=106.2
Q ss_pred eEEEEEEEEecCCCCCCC--CCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCC
Q 008305 264 GTLDVKLVQAKELTNKDL--IGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPM 341 (570)
Q Consensus 264 G~L~V~V~~A~~L~~~~~--~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~ 341 (570)
|+|+|+|++|++|+..+. .+.+||||+++++ .+.++|++++++.||.|||+|.|.+.+...+.|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~- 76 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG---AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRF- 76 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC---CEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCC-
Confidence 789999999999999887 7899999999986 5678999999999999999999999876678999999999988
Q ss_pred CCCceEEEEEEEccccCC---CeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305 342 LAPEIIGIAQIALKELEP---GKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY 391 (570)
Q Consensus 342 ~~d~~lG~~~i~l~~l~~---~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 391 (570)
+.+++||++.++++++.. ......|++|.+... .+.....|+|++++.|
T Consensus 77 ~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~-~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 77 AGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP-GKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCcceEEEEEHHHhhcccccCccceeEEccCccc-CccccccceEEEEEEC
Confidence 889999999999999973 344679999975422 2345689999999875
No 17
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=2e-19 Score=157.04 Aligned_cols=120 Identities=28% Similarity=0.413 Sum_probs=103.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCC---CCeEEEEEEeCCCCC
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDAS---TQHLTVRVFDDEGPM 341 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~---~~~L~~~v~d~d~~~ 341 (570)
.|+|+|++|++|+..+..|.+||||+++++ ++.++|+++.++.||+|||+|.|.+.++. ...|.|+|||++..
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~- 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS- 76 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC-
Confidence 379999999999999888999999999997 56789999999999999999999987543 35799999999987
Q ss_pred C-CCceEEEEEEEccccC-CCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305 342 L-APEIIGIAQIALKELE-PGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY 391 (570)
Q Consensus 342 ~-~d~~lG~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 391 (570)
+ .|++||++.++++++. .+.....|++|.+.. ..++.+|+|++++.+
T Consensus 77 ~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~ 125 (127)
T cd04022 77 GRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG---LFSRVRGEIGLKVYI 125 (127)
T ss_pred cCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC---CCCCccEEEEEEEEE
Confidence 6 7999999999999997 566678999997532 234579999999887
No 18
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.82 E-value=1.7e-19 Score=155.54 Aligned_cols=115 Identities=27% Similarity=0.554 Sum_probs=101.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCC-CCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCc
Q 008305 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHD-TLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKD 522 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d 522 (570)
|.|+|+|++|+||+..+..+.+||||++++++ .+++|+++.+ +.||.|||.|.|.+.....+.|.|+|||++..+++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG--VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC--CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCc
Confidence 67999999999999999889999999999964 6678888754 78999999999999876678899999999887767
Q ss_pred eeEEEEEeccccccCceEEEEEEecCC--CCeEEEEEEEE
Q 008305 523 KMGKCIMTLTRVMMEGEIQDSFHIDGT--KSGKLFLNLKW 560 (570)
Q Consensus 523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~--~~G~i~l~~~~ 560 (570)
+||++.++++++..+....+||+|... ..|+|+++++|
T Consensus 79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 79 LIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred ceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 999999999999877677899999754 57999999986
No 19
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.81 E-value=3.3e-19 Score=154.56 Aligned_cols=115 Identities=34% Similarity=0.637 Sum_probs=103.6
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECC
Q 008305 444 GVLSITVIAAENLPKVDL------IGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHD 517 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~------~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~ 517 (570)
|.|+|+|++|+||+..+. .|.+||||++++++ ..++|++++++.||.|||.|.|.+.+.....|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~--~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~ 78 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA--QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDED 78 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC--EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecC
Confidence 679999999999998774 36899999999964 7889999999999999999999997666789999999998
Q ss_pred CCCCceeEEEEEeccccccCceEEEEEEecCCCCeEEEEEEEE
Q 008305 518 TFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKW 560 (570)
Q Consensus 518 ~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~ 560 (570)
..++++||++.++++++..++...+||+|.+..+|+|+++++|
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 79 PDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred CCCCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 8855799999999999988777899999999889999999987
No 20
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.81 E-value=4.7e-19 Score=152.89 Aligned_cols=115 Identities=25% Similarity=0.525 Sum_probs=103.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCcee
Q 008305 446 LSITVIAAENLPKVDLIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKM 524 (570)
Q Consensus 446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~l 524 (570)
|+|+|++|++|+..+..+.+||||++++.+ ...++||++++++.||.|||+|.|.+.......|.|+|||++..++++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 789999999999988888999999999853 2467899999999999999999999976656789999999998855799
Q ss_pred EEEEEeccccccCceEEEEEEecCCCCeEEEEEEEE
Q 008305 525 GKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKW 560 (570)
Q Consensus 525 G~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~ 560 (570)
|++.++++++..+.....||+|..++.|++++++.+
T Consensus 82 G~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 999999999988888899999999889999998875
No 21
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.81 E-value=1.8e-19 Score=151.52 Aligned_cols=107 Identities=14% Similarity=0.183 Sum_probs=90.8
Q ss_pred ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeC-CCceEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEEE
Q 008305 259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPL-RDRMKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRVF 335 (570)
Q Consensus 259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~-~~~~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v~ 335 (570)
|....|.|.|+|++|++|+ . .|.+||||++++.+. +..+++|+++++|+||+|||+|.|.+.. .....|.|.||
T Consensus 9 Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~ 85 (118)
T cd08677 9 YDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR 85 (118)
T ss_pred EcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence 4567899999999999998 2 467999999999853 3357899999999999999999999854 34567999999
Q ss_pred eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305 336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369 (570)
Q Consensus 336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 369 (570)
|+|++ +++++||++.++++++..+...+.|..|
T Consensus 86 d~Drf-s~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 86 CCDRF-SRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred eCCCC-CCCceEEEEEEccccccCCccccchhcC
Confidence 99999 9999999999999988666566778653
No 22
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.81 E-value=6.4e-19 Score=151.99 Aligned_cols=119 Identities=26% Similarity=0.428 Sum_probs=101.5
Q ss_pred EEEEEEEecCCCCCC-CCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305 266 LDVKLVQAKELTNKD-LIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP 344 (570)
Q Consensus 266 L~V~V~~A~~L~~~~-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d 344 (570)
|.|+|++|+||+..+ ..|.+||||.++++ +...++|+++++|+||.|||+|.|.+.+. ...|.|.|||++.. ++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~-~~~ 77 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVL-RRD 77 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--CccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCC-CCC
Confidence 689999999999874 45789999999996 33468999999999999999999999754 46899999999998 899
Q ss_pred ceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305 345 EIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY 391 (570)
Q Consensus 345 ~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 391 (570)
++||.+.++++++..+...+.|++|.+.. ..++..|+|++++++
T Consensus 78 ~~iG~~~i~l~~l~~~~~~~~w~~L~~~~---~~~~~~G~i~l~~~~ 121 (121)
T cd08401 78 SVIGKVAIKKEDLHKYYGKDTWFPLQPVD---ADSEVQGKVHLELRL 121 (121)
T ss_pred ceEEEEEEEHHHccCCCCcEeeEEEEccC---CCCcccEEEEEEEEC
Confidence 99999999999998877789999997542 234568999998764
No 23
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.81 E-value=8.6e-19 Score=154.18 Aligned_cols=118 Identities=26% Similarity=0.555 Sum_probs=106.0
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCC
Q 008305 441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFG 520 (570)
Q Consensus 441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~ 520 (570)
...|.|+|+|++|++|+..+..|.+||||++.++ ...++|++++++.||.|||.|.|.+.+...+.|.|+|||++..+
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~--~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~ 89 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG--SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFS 89 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC--CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCC
Confidence 4469999999999999999988999999999994 46789999999999999999999998777789999999999876
Q ss_pred C-ceeEEEEEecccccc-----CceEEEEEEecCCCCeEEEEEEEE
Q 008305 521 K-DKMGKCIMTLTRVMM-----EGEIQDSFHIDGTKSGKLFLNLKW 560 (570)
Q Consensus 521 ~-d~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~G~i~l~~~~ 560 (570)
+ ++||++.+++.++.. ...+.+|..+.+...|+|++++.+
T Consensus 90 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 90 PDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 5 699999999999986 345678899999999999999986
No 24
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.81 E-value=3.6e-19 Score=155.25 Aligned_cols=112 Identities=22% Similarity=0.423 Sum_probs=97.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeec-----CCCcEEEEEEEECCCCC
Q 008305 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVED-----GQHEMLILDVYDHDTFG 520 (570)
Q Consensus 446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~-----~~~~~L~i~V~d~~~~~ 520 (570)
++|+|++|+||+..+..|.+||||++.++ ..++||++++++.||+|||.|.|.+.+ .....|.|+|||++..+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~--~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~ 78 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG--KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG 78 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC--CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC
Confidence 47999999999999888999999999995 467899999999999999999999976 35678999999999886
Q ss_pred C-ceeEEEEEeccccc--cCceEEEEEEecCC------CCeEEEEEEE
Q 008305 521 K-DKMGKCIMTLTRVM--MEGEIQDSFHIDGT------KSGKLFLNLK 559 (570)
Q Consensus 521 ~-d~lG~~~i~l~~l~--~~~~~~~w~~L~~~------~~G~i~l~~~ 559 (570)
+ ++||++.++++++. .+....+||+|.+. ..|+|+++++
T Consensus 79 ~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 79 LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 5 79999999999987 44567899999742 3699999874
No 25
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.80 E-value=9.3e-19 Score=152.31 Aligned_cols=122 Identities=20% Similarity=0.366 Sum_probs=102.4
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCC
Q 008305 263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPML 342 (570)
Q Consensus 263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~ 342 (570)
...|+|+|++|+||+.. +.+||||+++++ +.+..+|+++ ++.||.|||+|.|.+.....+.+.|.|||++.. +
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~--~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~-~ 75 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLN--EVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKR-S 75 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEEC--CEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCC-C
Confidence 45799999999999875 478999999996 2345688874 689999999999987655546899999999998 8
Q ss_pred CCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305 343 APEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCP 393 (570)
Q Consensus 343 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p 393 (570)
+|++||++.+++.++..+...+.|++|.+.. ....+..|+|+++++|.+
T Consensus 76 ~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~--~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 KDSEIAEVTVQLSKLQNGQETDEWYPLSSAS--PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCCeEEEEEEEHhHccCCCcccEeEEcccCC--CCCCCcCcEEEEEEEEEc
Confidence 9999999999999999888889999997642 124567899999999974
No 26
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.80 E-value=6.6e-19 Score=152.14 Aligned_cols=103 Identities=27% Similarity=0.458 Sum_probs=90.5
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEe-e--cCCCcEEEEEEEEC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVV-E--DGQHEMLILDVYDH 516 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v-~--~~~~~~L~i~V~d~ 516 (570)
.+.|.|.|++|+||+..+ .+.+||||++++... ..++||++++++.||.|||+|.|.+ . +.....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 378999999999999999 899999999999632 3578999999999999999999987 2 33567899999999
Q ss_pred CCCCC-ceeEEEEEeccccccCceEEEEEEe
Q 008305 517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHI 546 (570)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L 546 (570)
+..++ ++||++.++|+++........||+|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 98865 7999999999999887778899987
No 27
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.80 E-value=1.1e-18 Score=152.03 Aligned_cols=122 Identities=25% Similarity=0.419 Sum_probs=104.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCc
Q 008305 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE 345 (570)
Q Consensus 266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~ 345 (570)
|.|+|++|++|+. ..|.+||||+++++. ..+.++|+++.++.||+|||.|.|.+.. ..+.|.|+|||++.. ++|+
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~-~~~~ 75 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE-PPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKK-SDSK 75 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC-CCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCC-CCCc
Confidence 5799999999987 578999999999962 2456899999999999999999999863 457899999999998 8899
Q ss_pred eEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEec
Q 008305 346 IIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPF 394 (570)
Q Consensus 346 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~ 394 (570)
+||++.++++++..+.....|++|.+... ...+..|+|++++.|.+.
T Consensus 76 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 76 FLGLAIVPFDELRKNPSGRQIFPLQGRPY--EGDSVSGSITVEFLFMEP 122 (126)
T ss_pred eEEEEEEeHHHhccCCceeEEEEecCCCC--CCCCcceEEEEEEEEecc
Confidence 99999999999998877889999975421 245679999999999753
No 28
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=7.8e-19 Score=151.25 Aligned_cols=109 Identities=24% Similarity=0.398 Sum_probs=95.5
Q ss_pred EEEEEEEEeec---CCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCC--
Q 008305 445 VLSITVIAAEN---LPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTF-- 519 (570)
Q Consensus 445 ~L~V~v~~a~~---L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~-- 519 (570)
.|+|+|++|+| |+..+..|.+||||++.++ .++.||++++++.||+|||+|.|.+.++ ...|.|+|||++..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g--~~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~ 77 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG--PKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHW 77 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEEC--CEEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCccc
Confidence 48999999999 8888989999999999995 4688999999999999999999999764 45899999999886
Q ss_pred -----CCceeEEEEEeccccccCceEEEEEEecC------CCCeEEEE
Q 008305 520 -----GKDKMGKCIMTLTRVMMEGEIQDSFHIDG------TKSGKLFL 556 (570)
Q Consensus 520 -----~~d~lG~~~i~l~~l~~~~~~~~w~~L~~------~~~G~i~l 556 (570)
++++||++.++++++..+....+||+|.. .+.|+|++
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 55799999999999998888899999973 24677764
No 29
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.80 E-value=1.7e-19 Score=156.96 Aligned_cols=96 Identities=33% Similarity=0.595 Sum_probs=89.6
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC
Q 008305 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP 340 (570)
Q Consensus 261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~ 340 (570)
.+.|.|+|+|++|.+|..+|..+++||||++.++ +++.+|+++++++||+|||.|.|.+.++. ..|++.|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg---~q~lkT~~v~~n~NPeWNe~ltf~v~d~~-~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG---NQKLKTRVVYKNLNPEWNEELTFTVKDPN-TPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEEC---CeeeeeeeecCCCCCcccceEEEEecCCC-ceEEEEEEeCCCC
Confidence 4689999999999999999988999999999998 78889999999999999999999999876 5899999999999
Q ss_pred CCCCceEEEEEEEccccCCCe
Q 008305 341 MLAPEIIGIAQIALKELEPGK 361 (570)
Q Consensus 341 ~~~d~~lG~~~i~l~~l~~~~ 361 (570)
++||++|.|+|++..+....
T Consensus 79 -s~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 79 -SSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred -CcccccceeeeccHHHHHHh
Confidence 99999999999999987654
No 30
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.80 E-value=1.3e-18 Score=149.60 Aligned_cols=114 Identities=32% Similarity=0.582 Sum_probs=102.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-ce
Q 008305 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DK 523 (570)
Q Consensus 445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~ 523 (570)
+++|+|++|+||+..+..|.+||||+++++ ..+++|+++++|.||.|||+|.|.+.+.....|.|+|||++..++ ++
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~ 78 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG--NEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEF 78 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEEC--CEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCe
Confidence 478999999999999988999999999995 467899999999999999999999987667899999999998765 69
Q ss_pred eEEEEEeccccccCceEEEEEEecCCCCeEEEEEEEEE
Q 008305 524 MGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKWT 561 (570)
Q Consensus 524 lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~ 561 (570)
||++.++++++..+.....|++|++. .|+|++.+.|.
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 79 IGRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 99999999999888888999999876 59999998874
No 31
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.80 E-value=1.1e-18 Score=153.88 Aligned_cols=106 Identities=25% Similarity=0.330 Sum_probs=91.3
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEE-ECC
Q 008305 443 RGVLSITVIAAENLPKVD-LIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVY-DHD 517 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~-d~~ 517 (570)
.+.|.|+|++|+||+..+ ..|.+||||++++.... .+.||+++++++||+|||+|.|.+. ..+..|.|+|| |++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 378999999999998864 56889999999996432 4789999999999999999999998 67789999999 566
Q ss_pred CCCC-ceeEEEEEeccccccCceEEEEEEecCC
Q 008305 518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT 549 (570)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~ 549 (570)
..++ ++||++.|+|+++..+.....||+|...
T Consensus 107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 6654 6999999999999777778899999764
No 32
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.80 E-value=8.5e-19 Score=158.27 Aligned_cols=123 Identities=28% Similarity=0.497 Sum_probs=104.5
Q ss_pred ceEEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEEEeCCCceEEeeeeCCCCCC
Q 008305 263 CGTLDVKLVQAKELTNKD------------------------------LIGKSDPFVVIFVRPLRDRMKTSKTINNELNP 312 (570)
Q Consensus 263 ~G~L~V~V~~A~~L~~~~------------------------------~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP 312 (570)
.|+|.|+|++|++|+++| ..|.+||||+++++ +.+..+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~--~~~~~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA--GARVARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC--CeEeeEEEEeCCCCCC
Confidence 699999999999999987 24678999999997 2345799999999999
Q ss_pred eeecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305 313 IWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC 392 (570)
Q Consensus 313 ~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 392 (570)
+|||+|.|.+.+. .+.|.|.|||++.. .+++||++.++++++..+...+.|++|.+.. .+..+..|+|+++++|.
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~--~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~--~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVV--GAQLIGRAYIPVEDLLSGEPVEGWLPILDSN--GKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCc--CCcEEEEEEEEhHHccCCCCcceEEECcCCC--CCCCCCCCEEEEEEEEC
Confidence 9999999998754 46899999999987 4689999999999999888889999997542 23445678999999983
No 33
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.80 E-value=3.8e-19 Score=153.64 Aligned_cols=105 Identities=28% Similarity=0.445 Sum_probs=93.5
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEE-e--cCCCCeEEEEEEeC
Q 008305 263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTV-E--DASTQHLTVRVFDD 337 (570)
Q Consensus 263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v-~--~~~~~~L~~~v~d~ 337 (570)
.|.|.|+|++|++|+..+ .+.+||||++++.+... .+++|++++++.||+|||+|.|.+ . +.....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 589999999999999999 89999999999986543 468999999999999999999987 2 34556899999999
Q ss_pred CCCCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305 338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369 (570)
Q Consensus 338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 369 (570)
+.. +++++||++.++|+++..+.....|++|
T Consensus 91 d~~-~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSL-VENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCC-cCCcEEEEEEEeccccccCCCccceEEC
Confidence 998 8899999999999999988778899987
No 34
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.80 E-value=8e-19 Score=152.43 Aligned_cols=121 Identities=26% Similarity=0.529 Sum_probs=105.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP 344 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d 344 (570)
.|+|+|++|++|...+..+.+||||+++++ ++.++|+++.++.||.|||+|.|.+.+.....|.|+|||++.. +.+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~-~~~ 76 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---GQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLV-SKN 76 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEEC---CEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCC-CCC
Confidence 389999999999999888899999999986 5678999999999999999999999876667899999999998 889
Q ss_pred ceEEEEEEEccccCCCeeeEEEEEeeccccc-cCCCcceeEEEEEE
Q 008305 345 EIIGIAQIALKELEPGKVKDVWLKLVKDVKV-QRDTKNRGQVHLEL 389 (570)
Q Consensus 345 ~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~G~l~l~l 389 (570)
++||++.++++++..+.....|+.|.+.... ...++..|.|++.+
T Consensus 77 ~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 77 DFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred cEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999999999877667899999764422 23567899999876
No 35
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.80 E-value=8.3e-19 Score=154.64 Aligned_cols=109 Identities=25% Similarity=0.417 Sum_probs=95.5
Q ss_pred ceEEEEEEEEecCCCCCC-CCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEE-eCC
Q 008305 263 CGTLDVKLVQAKELTNKD-LIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVF-DDE 338 (570)
Q Consensus 263 ~G~L~V~V~~A~~L~~~~-~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~-d~d 338 (570)
.|.|.|+|++|+||...+ ..|.+||||++++.+.+. .+++|+++++++||+|||+|.|.+. .....|.++|| |++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 689999999999998864 568899999999986544 3789999999999999999999998 56779999999 577
Q ss_pred CCCCCCceEEEEEEEccccCCCeeeEEEEEeeccc
Q 008305 339 GPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDV 373 (570)
Q Consensus 339 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 373 (570)
.. +++++||++.++|+++..+.....|++|.+..
T Consensus 107 ~~-~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 107 RM-DKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred CC-CCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 77 88999999999999997777778999997654
No 36
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.80 E-value=6.4e-19 Score=152.69 Aligned_cols=115 Identities=35% Similarity=0.640 Sum_probs=101.6
Q ss_pred eEEEEEEEEecCCCCCCC------CCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeC
Q 008305 264 GTLDVKLVQAKELTNKDL------IGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDD 337 (570)
Q Consensus 264 G~L~V~V~~A~~L~~~~~------~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~ 337 (570)
|+|+|+|++|++|+..+. .|.+||||+++++ ++.++|++++++.||+|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 789999999999998774 3689999999997 4789999999999999999999999876678999999999
Q ss_pred CCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305 338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY 391 (570)
Q Consensus 338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 391 (570)
+.. ++++||++.++++++..+...+.|++|. ....|+|+++++|
T Consensus 78 ~~~--~~~~iG~~~i~l~~l~~~~~~~~w~~L~--------~~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD--KDDFLGRLSIDLGSVEKKGFIDEWLPLE--------DVKSGRLHLKLEW 121 (121)
T ss_pred CCC--CCCcEEEEEEEHHHhcccCccceEEECc--------CCCCceEEEEEeC
Confidence 986 7899999999999998877788999994 2367999998765
No 37
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.80 E-value=6.3e-19 Score=148.19 Aligned_cols=101 Identities=17% Similarity=0.293 Sum_probs=86.1
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC--CCceEeCcccCCCCCCeeeeEEEEEeec--CCCcEEEEEEEECCC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK--AGNRAKTRVAHDTLNPVWNQTFDFVVED--GQHEMLILDVYDHDT 518 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~--~~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~V~d~~~ 518 (570)
.+.|+|+|++|+||+ ..|.+||||++++.. +..+++|+++++|.||+|||+|.|.+.. ..+..|.|+|||+|+
T Consensus 13 ~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr 89 (118)
T cd08677 13 KAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR 89 (118)
T ss_pred CCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC
Confidence 689999999999998 246699999999953 3357899999999999999999999863 356789999999999
Q ss_pred CCC-ceeEEEEEeccccccCceEEEEEEe
Q 008305 519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHI 546 (570)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L 546 (570)
+++ |+||++.+++.++.......+|..|
T Consensus 90 fs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 90 FSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCCceEEEEEEccccccCCccccchhcC
Confidence 977 7999999999998666666778654
No 38
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=1.3e-18 Score=150.63 Aligned_cols=116 Identities=26% Similarity=0.429 Sum_probs=102.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-ce
Q 008305 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DK 523 (570)
Q Consensus 445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~ 523 (570)
.|+|+|++|+||+..+..|.+||||++.+++ ...++|++++++.||.|||.|.|.+.+. ...|.|+|||++..++ ++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~ 78 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDF 78 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC-EEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcc
Confidence 3789999999999999889999999999863 4678999999999999999999998754 5789999999999855 79
Q ss_pred eEEEEEeccccccCceEEEEEEecCC----CCeEEEEEEEEEe
Q 008305 524 MGKCIMTLTRVMMEGEIQDSFHIDGT----KSGKLFLNLKWTP 562 (570)
Q Consensus 524 lG~~~i~l~~l~~~~~~~~w~~L~~~----~~G~i~l~~~~~p 562 (570)
||++.+++.++..+.....|++|.+. ..|+|++.+++.|
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 99999999999988888999999644 3699999999986
No 39
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.79 E-value=1.4e-18 Score=151.19 Aligned_cols=122 Identities=26% Similarity=0.447 Sum_probs=102.3
Q ss_pred ceEEEEEEEEecCCCCCC-CCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCC
Q 008305 263 CGTLDVKLVQAKELTNKD-LIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPM 341 (570)
Q Consensus 263 ~G~L~V~V~~A~~L~~~~-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~ 341 (570)
.|.|+|+|++|++|+..+ ..+.+||||+++++.. .+.++|+++.++.||.|||.|.|.+. ...+.|.|+|||++..
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~- 77 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDK- 77 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCC-
Confidence 489999999999999755 3467999999999732 36789999999999999999999988 4567999999999998
Q ss_pred CCCceEEEEEEEccccCCCeeeE-EEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305 342 LAPEIIGIAQIALKELEPGKVKD-VWLKLVKDVKVQRDTKNRGQVHLELLYCP 393 (570)
Q Consensus 342 ~~d~~lG~~~i~l~~l~~~~~~~-~w~~L~~~~~~~~~~~~~G~l~l~l~~~p 393 (570)
++|++||++.+++.++..+.... .|..+ ...++..|+|+++++|.|
T Consensus 78 ~~d~~iG~~~~~l~~l~~~~~~~~~~~~~------~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 78 RKDKLIGTAEFDLSSLLQNPEQENLTKNL------LRNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCceeEEEEEEHHHhccCccccCcchhh------hcCCccceEEEEEEEeCC
Confidence 89999999999999998766554 33433 235678899999999976
No 40
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.79 E-value=1.7e-18 Score=150.42 Aligned_cols=105 Identities=27% Similarity=0.406 Sum_probs=90.6
Q ss_pred ceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeec--CCCcEEEEEEEEC
Q 008305 443 RGVLSITVIAAENLPKVDLI-GKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVED--GQHEMLILDVYDH 516 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~V~d~ 516 (570)
.+.|.|+|++|+||+..+.. |.+||||++++... ..++||++++++.||+|||+|.|.+.. .....|.|+|||+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 47899999999999998875 88999999999532 245799999999999999999999863 3456899999999
Q ss_pred CCCCC-ceeEEEEEeccccccCceEEEEEEec
Q 008305 517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHID 547 (570)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (570)
+..++ ++||++.++|.++........||+|.
T Consensus 94 ~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 94 DSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 98766 69999999999998777778999874
No 41
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=1.3e-18 Score=150.09 Aligned_cols=114 Identities=24% Similarity=0.452 Sum_probs=98.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP 344 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d 344 (570)
.|.|+|++|++|+.. .+||||+++++ .+..+|++++++.||+|||+|.|.+.+...+.|.++|||++.. ++
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~--~~ 71 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA--KD 71 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC--cC
Confidence 378999999999877 68999999997 4678999999999999999999998876678999999999986 78
Q ss_pred ceEEEEEEEccccCCC-----eeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305 345 EIIGIAQIALKELEPG-----KVKDVWLKLVKDVKVQRDTKNRGQVHLELLY 391 (570)
Q Consensus 345 ~~lG~~~i~l~~l~~~-----~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 391 (570)
++||++.++++++... .....|++|.+.. ..+.+|+|++++.|
T Consensus 72 ~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~----~~~~~G~i~l~~~~ 119 (121)
T cd08378 72 DFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK----GGRVGGELMLAVWF 119 (121)
T ss_pred ceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC----CCccceEEEEEEEe
Confidence 9999999999998653 2356899997542 35788999999987
No 42
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.79 E-value=1.9e-18 Score=151.28 Aligned_cols=115 Identities=33% Similarity=0.614 Sum_probs=101.3
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC
Q 008305 444 GVLSITVIAAENLPKVDL--IGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK 521 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~--~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~ 521 (570)
|.|+|+|++|+||+..+. .+.+||||++.++ ..+++|++++++.||.|||.|.|.+.+.....|.|+|||++..++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~--~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~ 78 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG--AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAG 78 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC--CEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCC
Confidence 689999999999999887 8899999999985 467899999999999999999999987667899999999998754
Q ss_pred -ceeEEEEEecccccc---CceEEEEEEecCC-------CCeEEEEEEEE
Q 008305 522 -DKMGKCIMTLTRVMM---EGEIQDSFHIDGT-------KSGKLFLNLKW 560 (570)
Q Consensus 522 -d~lG~~~i~l~~l~~---~~~~~~w~~L~~~-------~~G~i~l~~~~ 560 (570)
++||++.+++.++.. .....+||+|.+. .+|+|+++++|
T Consensus 79 ~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 79 KDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 799999999999873 2345899999765 48999999987
No 43
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=1.9e-18 Score=154.26 Aligned_cols=119 Identities=25% Similarity=0.352 Sum_probs=101.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCC-CCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-c
Q 008305 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHD-TLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-D 522 (570)
Q Consensus 445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d 522 (570)
.|.|+|++|+||+..+..|.+||||++.+++ ++.+|+++.+ +.||+|||.|+|.+.++..+.|.|+|+|++..++ +
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~--~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd 78 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN--QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDE 78 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC--EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCC
Confidence 3799999999999999999999999999964 7789998876 6999999999999987666789999999987754 7
Q ss_pred eeEEEEEeccccccC----ceEEEEEEecCCC-----------CeEEEEEEEEEecCC
Q 008305 523 KMGKCIMTLTRVMME----GEIQDSFHIDGTK-----------SGKLFLNLKWTPQLV 565 (570)
Q Consensus 523 ~lG~~~i~l~~l~~~----~~~~~w~~L~~~~-----------~G~i~l~~~~~p~~~ 565 (570)
+||++.++|+++..+ ....+||+|.+.. +|+|+|+++|.+...
T Consensus 79 ~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~ 136 (150)
T cd04019 79 PLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH 136 (150)
T ss_pred eEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence 999999999998753 2358999997542 499999999986544
No 44
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.78 E-value=1.2e-18 Score=151.46 Aligned_cols=109 Identities=22% Similarity=0.419 Sum_probs=95.2
Q ss_pred cCCceEEEEEEEEecCCCCCCCC-CCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEE
Q 008305 260 LKPCGTLDVKLVQAKELTNKDLI-GKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRV 334 (570)
Q Consensus 260 ~~~~G~L~V~V~~A~~L~~~~~~-g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v 334 (570)
....+.|.|+|++|+||+..+.. |.+||||++++.+.. ..+++|+++++++||+|||+|.|.+.. .....|.|+|
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 11 DPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred ECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 34568999999999999999875 889999999998654 235799999999999999999999863 3456899999
Q ss_pred EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305 335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369 (570)
Q Consensus 335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 369 (570)
||++.. +++++||++.++|+++..+.....|++|
T Consensus 91 ~d~~~~-~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 91 WHRDSL-GRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred EeCCCC-CCCcEeEEEEEecCccccCCCCcceEEC
Confidence 999998 8999999999999999877777889987
No 45
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.78 E-value=1.5e-18 Score=150.87 Aligned_cols=110 Identities=33% Similarity=0.538 Sum_probs=98.1
Q ss_pred cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEeC
Q 008305 260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFDD 337 (570)
Q Consensus 260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d~ 337 (570)
.+..|.|.|+|++|++|+..+..|.+||||++++.+.+.+.++|++++++.||+|||+|.|.+... ....|.++|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~ 91 (124)
T cd08387 12 DKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDF 91 (124)
T ss_pred CCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence 456789999999999999999889999999999976556678999999999999999999998643 346899999999
Q ss_pred CCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305 338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV 370 (570)
Q Consensus 338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 370 (570)
+.. +++++||++.++++++..+...+.|++|.
T Consensus 92 ~~~-~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 92 DQF-SRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCC-CCCceeEEEEEecccccCCCCcceEEECc
Confidence 998 88999999999999998777889999984
No 46
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.78 E-value=1.8e-18 Score=150.04 Aligned_cols=110 Identities=19% Similarity=0.336 Sum_probs=95.9
Q ss_pred ccCCceEEEEEEEEecCCCCCCC-CCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEE
Q 008305 259 ELKPCGTLDVKLVQAKELTNKDL-IGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVR 333 (570)
Q Consensus 259 ~~~~~G~L~V~V~~A~~L~~~~~-~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~ 333 (570)
+....|.|.|+|++|+||+..+. .|.+||||++++.+.+. .+++|++++++.||+|||+|.|.+... ....|.|+
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 34578899999999999998875 47899999999986543 367999999999999999999998642 35679999
Q ss_pred EEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305 334 VFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369 (570)
Q Consensus 334 v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 369 (570)
|||++.. +++++||++.+++.++......+.|++|
T Consensus 90 V~d~~~~-~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRF-GRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCC-CCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 9999998 8999999999999999888888999987
No 47
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.78 E-value=4.9e-18 Score=149.71 Aligned_cols=122 Identities=29% Similarity=0.454 Sum_probs=102.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC----CceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR----DRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP 340 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~ 340 (570)
.|+|+|++|++|+..+..|.+||||++++.... ...++|++++++.||.|||+|.|.+... .+.|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 489999999999999988999999999998431 1256899999999999999999998743 46899999999998
Q ss_pred CCCCceEEEEEEEccccCCCe------eeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305 341 MLAPEIIGIAQIALKELEPGK------VKDVWLKLVKDVKVQRDTKNRGQVHLELLY 391 (570)
Q Consensus 341 ~~~d~~lG~~~i~l~~l~~~~------~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 391 (570)
+.+++||++.++++++..+. ....|++|.+. ...++..|+|++++.|
T Consensus 80 -~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~---~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 -TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR---SSKSRVKGHLRLYMAY 132 (133)
T ss_pred -CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec---CCCCcceeEEEEEEee
Confidence 88999999999999997643 24689999753 2245789999999987
No 48
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.78 E-value=3.8e-18 Score=148.05 Aligned_cols=105 Identities=23% Similarity=0.422 Sum_probs=90.9
Q ss_pred ceEEEEEEEEeecCCCCCC-CCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEEC
Q 008305 443 RGVLSITVIAAENLPKVDL-IGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDH 516 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~-~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~ 516 (570)
.+.|.|+|++|+||+..+. .|.+||||++++... ..++||++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~ 93 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY 93 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 5889999999999998765 478999999999532 2467999999999999999999998642 456899999999
Q ss_pred CCCCC-ceeEEEEEeccccccCceEEEEEEec
Q 008305 517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHID 547 (570)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (570)
+..++ ++||++.+++.++........||+|.
T Consensus 94 ~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 94 DRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 98876 69999999999999888889999983
No 49
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.78 E-value=5.2e-18 Score=147.88 Aligned_cols=116 Identities=21% Similarity=0.448 Sum_probs=101.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-cee
Q 008305 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DKM 524 (570)
Q Consensus 446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~l 524 (570)
|.|+|++|+||+. ..|.+||||+++++....+++|++++++.||.|||.|.|.+.. ....|.|+|||++..++ ++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence 5799999999998 6789999999999643467899999999999999999999853 46789999999998865 699
Q ss_pred EEEEEeccccccCceEEEEEEecCC------CCeEEEEEEEEEecC
Q 008305 525 GKCIMTLTRVMMEGEIQDSFHIDGT------KSGKLFLNLKWTPQL 564 (570)
Q Consensus 525 G~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~~ 564 (570)
|++.++++++.......+||+|.+. ..|+|++++.|.+..
T Consensus 78 G~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 78 GLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 9999999999988878899999744 489999999998765
No 50
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.77 E-value=4.4e-18 Score=148.00 Aligned_cols=105 Identities=28% Similarity=0.492 Sum_probs=92.7
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTF 519 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~ 519 (570)
.+.|.|+|++|+||+..+..|.+||||++++.. +...+||++++++.||.|||+|.|.+... ....|.|+|||++..
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 94 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF 94 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCC
Confidence 588999999999999999889999999999953 34578999999999999999999998643 356899999999987
Q ss_pred CC-ceeEEEEEeccccccCceEEEEEEec
Q 008305 520 GK-DKMGKCIMTLTRVMMEGEIQDSFHID 547 (570)
Q Consensus 520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (570)
++ ++||++.++++++..++....||+|.
T Consensus 95 ~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 95 SRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCceeEEEEEecccccCCCCcceEEECc
Confidence 65 69999999999998777889999985
No 51
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=6.9e-18 Score=145.73 Aligned_cols=118 Identities=34% Similarity=0.604 Sum_probs=102.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCC
Q 008305 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLA 343 (570)
Q Consensus 264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~ 343 (570)
|.|.|+|++|++|+..+..+.+||||+++++ ...++|++++++.||.|||+|.|.+.+. .+.+.|+|||++.. ++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~-~~ 75 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV---NARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKD-KK 75 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC---CEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCC-CC
Confidence 7899999999999999988999999999986 4567999999999999999999998754 46899999999987 78
Q ss_pred CceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305 344 PEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY 391 (570)
Q Consensus 344 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 391 (570)
+++||++.+++.++..+. ..|+.|... ....+..|+|.+++.+
T Consensus 76 ~~~iG~~~~~l~~~~~~~--~~~~~l~~~---~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 76 PEFLGKVAIPLLSIKNGE--RKWYALKDK---KLRTRAKGSILLEMDV 118 (119)
T ss_pred CceeeEEEEEHHHCCCCC--ceEEECccc---CCCCceeeEEEEEEEe
Confidence 999999999999997653 579998643 2245679999999876
No 52
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.77 E-value=3.8e-18 Score=148.99 Aligned_cols=115 Identities=24% Similarity=0.419 Sum_probs=99.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCC---CcEEEEEEEECCCCC-
Q 008305 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ---HEMLILDVYDHDTFG- 520 (570)
Q Consensus 445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~---~~~L~i~V~d~~~~~- 520 (570)
.|+|+|++|+||+..+..|.+||||++++++ .++||++++++.||.|||.|.|.+.++. ...|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~--~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~ 78 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG--QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGR 78 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcC
Confidence 3799999999999998889999999999953 6789999999999999999999997532 367999999998874
Q ss_pred -CceeEEEEEeccccc-cCceEEEEEEecCC-----CCeEEEEEEEEE
Q 008305 521 -KDKMGKCIMTLTRVM-MEGEIQDSFHIDGT-----KSGKLFLNLKWT 561 (570)
Q Consensus 521 -~d~lG~~~i~l~~l~-~~~~~~~w~~L~~~-----~~G~i~l~~~~~ 561 (570)
+++||++.++++++. .+....+||+|+.. .+|+|++++.++
T Consensus 79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 479999999999998 34456899999753 489999999875
No 53
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.77 E-value=5.8e-18 Score=147.17 Aligned_cols=105 Identities=28% Similarity=0.401 Sum_probs=89.0
Q ss_pred ceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEEC
Q 008305 443 RGVLSITVIAAENLPKVDLI-GKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDH 516 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~ 516 (570)
.+.|.|+|++|+||+..+.. |.+||||++++... ..++||++++++.||+|||+|.|.+... ....|.+.|||.
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 58999999999999998864 89999999999532 3477999999999999999999998642 456899999999
Q ss_pred CCCCC-ceeEEEEEeccccccC---ceEEEEEEec
Q 008305 517 DTFGK-DKMGKCIMTLTRVMME---GEIQDSFHID 547 (570)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~---~~~~~w~~L~ 547 (570)
+..++ ++||++.|+|+++... ....+||+|.
T Consensus 94 ~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 94 RTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 98765 7999999999998643 2568999973
No 54
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.77 E-value=8.6e-18 Score=146.37 Aligned_cols=123 Identities=18% Similarity=0.257 Sum_probs=103.8
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCC
Q 008305 262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPM 341 (570)
Q Consensus 262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~ 341 (570)
|.++|+|+|++|++|...+..|.+||||++.++ ++.++|++++++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCE---GESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEEC---CEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 568999999999999999988999999999986 5678999999999999999999988764 56899999999987
Q ss_pred CCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305 342 LAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCP 393 (570)
Q Consensus 342 ~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p 393 (570)
.|++||++.+++.++.. ....|++|..... ...++..|+|.+++.+.+
T Consensus 76 -~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~-~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 -CDEFLGQATLSADPNDS--QTLRTLPLRKRGR-DAAGEVPGTISVKVTSSD 123 (126)
T ss_pred -CCCceEEEEEecccCCC--cCceEEEcccCCC-CCCCCCCCEEEEEEEEcc
Confidence 58999999999998643 3456778753322 356788999999998753
No 55
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.77 E-value=3.7e-18 Score=148.49 Aligned_cols=110 Identities=28% Similarity=0.497 Sum_probs=97.7
Q ss_pred cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEeC
Q 008305 260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFDD 337 (570)
Q Consensus 260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d~ 337 (570)
....|.|.|+|++|++|+..+..+.+||||++++.+...+.++|++++++.||+|||+|.|.+... ....|.|+|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 12 DFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 346789999999999999999889999999999986656678999999999999999999998642 346899999999
Q ss_pred CCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305 338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV 370 (570)
Q Consensus 338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 370 (570)
+.. +++++||++.++++++..+...+.|++|.
T Consensus 92 d~~-~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 92 DRF-SKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCC-CCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 998 88999999999999998888889999983
No 56
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.76 E-value=8e-18 Score=151.92 Aligned_cols=118 Identities=25% Similarity=0.484 Sum_probs=101.9
Q ss_pred cceEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEEeCCCceEeCcccCCCCCC
Q 008305 442 VRGVLSITVIAAENLPKVD------------------------------LIGKADPFVVLQLKKAGNRAKTRVAHDTLNP 491 (570)
Q Consensus 442 ~~g~L~V~v~~a~~L~~~~------------------------------~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP 491 (570)
--|.|.|+|++|++|+.+| ..|.+||||++.+++ ....||++++++.||
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~-~~~~rT~v~~~~~nP 83 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG-ARVARTRVIENSENP 83 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC-eEeeEEEEeCCCCCC
Confidence 3599999999999999877 346689999999964 355799999999999
Q ss_pred eeeeEEEEEeecCCCcEEEEEEEECCCCCCceeEEEEEeccccccCceEEEEEEecCC------CCeEEEEEEEEE
Q 008305 492 VWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGT------KSGKLFLNLKWT 561 (570)
Q Consensus 492 ~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~ 561 (570)
.|||+|.|.+.+. .+.|.|+|||++..++++||++.++++++..+...++||+|.+. ..|+|+++++|.
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 9999999998654 46899999999988889999999999999887788999999542 368999999984
No 57
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.76 E-value=2.4e-18 Score=146.32 Aligned_cols=102 Identities=28% Similarity=0.523 Sum_probs=89.5
Q ss_pred eEEEEEEEEecCCCCCCCC-CCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC---CCCeEEEEEEeCCC
Q 008305 264 GTLDVKLVQAKELTNKDLI-GKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA---STQHLTVRVFDDEG 339 (570)
Q Consensus 264 G~L~V~V~~A~~L~~~~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~---~~~~L~~~v~d~d~ 339 (570)
|+|+|+|++|++|+..+.. +.+||||++++.+.+...++|+++++++||+|||+|.|.+... ..+.|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7999999999999999987 8999999999975545678999999999999999999987644 34689999999999
Q ss_pred CCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305 340 PMLAPEIIGIAQIALKELEPGKVKDVWLKL 369 (570)
Q Consensus 340 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 369 (570)
. +.|++||++.++++++.. ...|+++
T Consensus 81 ~-~~dd~lG~~~i~l~~l~~---~~~~~~~ 106 (111)
T cd04041 81 F-TADDRLGRVEIDLKELIE---DRNWMGR 106 (111)
T ss_pred C-CCCCcceEEEEEHHHHhc---CCCCCcc
Confidence 8 889999999999999984 4467776
No 58
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.76 E-value=1.3e-17 Score=145.13 Aligned_cols=105 Identities=32% Similarity=0.558 Sum_probs=92.1
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTF 519 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~ 519 (570)
.+.|.|+|++|+||+..+..|.+||||++++.. ...+++|++++++.||.|||+|.|.+... ....|.|+|||++.+
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~ 94 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF 94 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence 578999999999999999889999999999863 23578999999999999999999998642 356899999999988
Q ss_pred CC-ceeEEEEEeccccccCceEEEEEEec
Q 008305 520 GK-DKMGKCIMTLTRVMMEGEIQDSFHID 547 (570)
Q Consensus 520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (570)
++ ++||++.++++++..+....+|++|+
T Consensus 95 ~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 95 SKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 65 69999999999998877789999986
No 59
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=7.5e-18 Score=145.32 Aligned_cols=110 Identities=28% Similarity=0.454 Sum_probs=95.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCcee
Q 008305 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKM 524 (570)
Q Consensus 445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~l 524 (570)
.|+|+|++|+||+.. .+||||++.++. .+.||++++++.||+|||+|.|.+.+.....|.|+|||++..++++|
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~--~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~l 74 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGN--YKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFL 74 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECC--ccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCcee
Confidence 378999999999887 689999999964 67899999999999999999999877677889999999998766899
Q ss_pred EEEEEeccccccCc-----eEEEEEEecCCC----CeEEEEEEEE
Q 008305 525 GKCIMTLTRVMMEG-----EIQDSFHIDGTK----SGKLFLNLKW 560 (570)
Q Consensus 525 G~~~i~l~~l~~~~-----~~~~w~~L~~~~----~G~i~l~~~~ 560 (570)
|++.++++++.... ...+||+|.+.. .|+|++.+.|
T Consensus 75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred eeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 99999999987543 246899997654 6999999987
No 60
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.76 E-value=6.9e-18 Score=144.90 Aligned_cols=103 Identities=21% Similarity=0.396 Sum_probs=88.2
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC-CCcEEEEEEEECCC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG-QHEMLILDVYDHDT 518 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~-~~~~L~i~V~d~~~ 518 (570)
.+.|.|+|++|+||+..+ .|.+||||++++... ..++||++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 478999999999999988 789999999999642 2467999999999999999999998642 23579999999987
Q ss_pred CC--CceeEEEEEeccccccCceEEEEEEe
Q 008305 519 FG--KDKMGKCIMTLTRVMMEGEIQDSFHI 546 (570)
Q Consensus 519 ~~--~d~lG~~~i~l~~l~~~~~~~~w~~L 546 (570)
.+ +++||++.+++.++..+....+||.|
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 64 36999999999999877778999976
No 61
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.76 E-value=5.6e-18 Score=150.41 Aligned_cols=105 Identities=23% Similarity=0.360 Sum_probs=89.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEe---------------cCCCC
Q 008305 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVE---------------DASTQ 328 (570)
Q Consensus 266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~---------------~~~~~ 328 (570)
|.|+|++|++|.. ..|.+||||++++.+.. .+.++|++++++.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 7899999999988 46899999999998532 24678999999999999999999985 12235
Q ss_pred eEEEEEEeCCCCCCCCceEEEEEEEccccCCC-eeeEEEEEeeccc
Q 008305 329 HLTVRVFDDEGPMLAPEIIGIAQIALKELEPG-KVKDVWLKLVKDV 373 (570)
Q Consensus 329 ~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L~~~~ 373 (570)
.|.|+|||++.. +.|++||++.+++.++..+ .....||+|.+..
T Consensus 80 ~L~i~V~d~~~~-~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 80 ELRVDLWHASMG-GGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEcCCCC-CCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 799999999998 8999999999999999876 5678999997653
No 62
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.76 E-value=1e-17 Score=146.03 Aligned_cols=110 Identities=19% Similarity=0.280 Sum_probs=93.4
Q ss_pred cCCceEEEEEEEEecCCCCCCCC-CCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEE-Ee--cCCCCeEEEEEE
Q 008305 260 LKPCGTLDVKLVQAKELTNKDLI-GKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFT-VE--DASTQHLTVRVF 335 (570)
Q Consensus 260 ~~~~G~L~V~V~~A~~L~~~~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~-v~--~~~~~~L~~~v~ 335 (570)
....+.|.|+|++|++|+..+.. +.+||||++++.+...++.||++++++.||+|||+|.|. +. +.....|.++||
T Consensus 12 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 12 NSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred ECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 34578999999999999998876 889999999998766667899999999999999999993 43 223457999999
Q ss_pred eCCCCCCCCceEEEEEEEccccCCC--eeeEEEEEee
Q 008305 336 DDEGPMLAPEIIGIAQIALKELEPG--KVKDVWLKLV 370 (570)
Q Consensus 336 d~d~~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~ 370 (570)
|++.. ++|++||++.++|+++... .....|++++
T Consensus 92 d~d~~-~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 92 SFDRY-SRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EcCCC-CCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 99998 8999999999999999644 5578898874
No 63
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.76 E-value=4.5e-18 Score=146.48 Aligned_cols=110 Identities=21% Similarity=0.329 Sum_probs=94.9
Q ss_pred ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC---ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEE
Q 008305 259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD---RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVR 333 (570)
Q Consensus 259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~ 333 (570)
|.+..|.|.|+|++|+||+..+..+.+||||++++.+.++ ..++|++++++.||+|||+|.|.+... ....|.|.
T Consensus 9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~ 88 (124)
T cd08680 9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD 88 (124)
T ss_pred ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence 4466789999999999999988788999999999997663 478999999999999999999998543 45689999
Q ss_pred EEeCCCCCCCCceEEEEEEEccccCCC-eeeEEEEEe
Q 008305 334 VFDDEGPMLAPEIIGIAQIALKELEPG-KVKDVWLKL 369 (570)
Q Consensus 334 v~d~d~~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L 369 (570)
|||++.. +++++||++.++|+++... .....|++|
T Consensus 89 V~~~~~~-~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 89 VCSVGPD-QQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEeCCCC-CceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999998 8999999999999999544 346678865
No 64
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.76 E-value=1.5e-17 Score=146.31 Aligned_cols=115 Identities=26% Similarity=0.477 Sum_probs=100.2
Q ss_pred ceEEEEEEEEecCCCCCCCC----------CCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEE
Q 008305 263 CGTLDVKLVQAKELTNKDLI----------GKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTV 332 (570)
Q Consensus 263 ~G~L~V~V~~A~~L~~~~~~----------g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~ 332 (570)
.|.|+|+|++|++|...+.. +.+||||+++++ +.+..+|+++.++.||.|||+|.|.+.+ ...|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEE
Confidence 58999999999999988752 578999999997 3345789999999999999999999973 468999
Q ss_pred EEEeCCCCCCCCceEEEEEEEccccCC--CeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305 333 RVFDDEGPMLAPEIIGIAQIALKELEP--GKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC 392 (570)
Q Consensus 333 ~v~d~d~~~~~d~~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 392 (570)
.|||++.. +.+++||++.++|+++.. +...+.|++|. ..|+|++.++|.
T Consensus 79 ~v~d~~~~-~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~l~l~~~~~ 129 (132)
T cd04014 79 TVFHDAAI-GPDDFVANCTISFEDLIQRGSGSFDLWVDLE----------PQGKLHVKIELK 129 (132)
T ss_pred EEEeCCCC-CCCceEEEEEEEhHHhcccCCCcccEEEEcc----------CCcEEEEEEEEe
Confidence 99999988 889999999999999987 56679999993 469999999986
No 65
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.76 E-value=9.4e-18 Score=141.22 Aligned_cols=102 Identities=27% Similarity=0.526 Sum_probs=91.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCcee
Q 008305 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKM 524 (570)
Q Consensus 445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~l 524 (570)
.|.|+|++|+||+..+..+.+||||++++++ ..+||++++++.||.|||.|.|.+.++..+.|.|+|+|++. +++|
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~i 76 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK--TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSL 76 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC--EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCcc
Confidence 3789999999999988889999999999964 78899999999999999999999988777899999999887 6799
Q ss_pred EEEEEeccccccCc--eEEEEEEecCCC
Q 008305 525 GKCIMTLTRVMMEG--EIQDSFHIDGTK 550 (570)
Q Consensus 525 G~~~i~l~~l~~~~--~~~~w~~L~~~~ 550 (570)
|++.++|.++.... ..++||+|++.+
T Consensus 77 G~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 77 GSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred EEEEEEHHHhhccccceeeeeEecCCCC
Confidence 99999999998664 568999998754
No 66
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.76 E-value=1.3e-17 Score=143.94 Aligned_cols=113 Identities=21% Similarity=0.334 Sum_probs=97.3
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-ce
Q 008305 446 LSITVIAAENLPKVD-LIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DK 523 (570)
Q Consensus 446 L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~ 523 (570)
|.|.|++|+||+..+ ..|.+||||++.++ +...++|+++++|.||.|||+|.|.+.+. ...|.|.|||++..++ ++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~-~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD-QEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC-CccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCce
Confidence 678999999999874 45789999999995 34578999999999999999999999743 4689999999998865 69
Q ss_pred eEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEEEE
Q 008305 524 MGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNLKW 560 (570)
Q Consensus 524 lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~ 560 (570)
||.+.++++++......+.||+|+.. .+|+|+++++|
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 99999999999877778999999753 37999999875
No 67
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.75 E-value=1e-17 Score=145.61 Aligned_cols=110 Identities=20% Similarity=0.360 Sum_probs=93.8
Q ss_pred ccCCceEEEEEEEEecCCCCCCCC-CCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEE
Q 008305 259 ELKPCGTLDVKLVQAKELTNKDLI-GKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVR 333 (570)
Q Consensus 259 ~~~~~G~L~V~V~~A~~L~~~~~~-g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~ 333 (570)
|....+.|.|+|++|+||+..+.. |.+||||++++.+..+ .++||++++++.||+|||+|.|.+... ....|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 345678999999999999998865 8999999999987653 367999999999999999999998543 34689999
Q ss_pred EEeCCCCCCCCceEEEEEEEccccCCC---eeeEEEEEe
Q 008305 334 VFDDEGPMLAPEIIGIAQIALKELEPG---KVKDVWLKL 369 (570)
Q Consensus 334 v~d~d~~~~~d~~lG~~~i~l~~l~~~---~~~~~w~~L 369 (570)
|||++.. +++++||++.|+|+++... .....||+|
T Consensus 90 V~~~~~~-~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTL-KRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCC-cCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9999998 8999999999999999543 356789987
No 68
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.75 E-value=1.8e-17 Score=143.28 Aligned_cols=118 Identities=25% Similarity=0.533 Sum_probs=99.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCc
Q 008305 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE 345 (570)
Q Consensus 266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~ 345 (570)
|.|+|++|++|++.+..|.+||||+++++ +....+|+++.++.||+|||.|.|.+... .+.|.|+|||++.. ++|+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~-~~d~ 77 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTL-SRDD 77 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCC-CCCC
Confidence 78999999999999988999999999996 23357999999999999999999998643 46899999999998 8999
Q ss_pred eEEEEEEEccccCCC-eeeEEEEEeeccccccCCCcceeEEEEEEE
Q 008305 346 IIGIAQIALKELEPG-KVKDVWLKLVKDVKVQRDTKNRGQVHLELL 390 (570)
Q Consensus 346 ~lG~~~i~l~~l~~~-~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~ 390 (570)
+||++.+++.++..+ ...+.|++|.+. .......|+|++.+.
T Consensus 78 ~iG~~~~~~~~~~~~~~~~~~W~~L~~~---~~~~~~~G~i~l~~~ 120 (121)
T cd04054 78 VIGKVSLTREVISAHPRGIDGWMNLTEV---DPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEEcHHHhccCCCCCCcEEECeee---CCCCccccEEEEEEE
Confidence 999999999988753 346799999643 224457899988764
No 69
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=2.8e-17 Score=143.55 Aligned_cols=117 Identities=29% Similarity=0.453 Sum_probs=101.3
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEeCCCCCCCCceE
Q 008305 270 LVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFDDEGPMLAPEII 347 (570)
Q Consensus 270 V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d~d~~~~~d~~l 347 (570)
|++|++|+. ..|.+||||+++++ +..++|++++++.||+|||+|.|.+... ..+.|.|+|||++.. ++|++|
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~---~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~-~~d~~i 75 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKV-GRNRLI 75 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEEC---CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCC-CCCceE
Confidence 688999988 57899999999996 5678999999999999999999999754 467899999999998 889999
Q ss_pred EEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEeccC
Q 008305 348 GIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGT 396 (570)
Q Consensus 348 G~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~ 396 (570)
|++.++++++..+.....|++|.+.. .....|+|+++++|.|...
T Consensus 76 G~~~~~l~~l~~~~~~~~~~~L~~~~----~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 76 GSATVSLQDLVSEGLLEVTEPLLDSN----GRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEEhhHcccCCceEEEEeCcCCC----CCcccEEEEEEEEEeCCCC
Confidence 99999999999888888999996432 2335799999999998644
No 70
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.75 E-value=2.5e-17 Score=143.31 Aligned_cols=116 Identities=19% Similarity=0.377 Sum_probs=97.3
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK- 521 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~- 521 (570)
...|+|+|++|+||+.. +.+||||++.+++ ....||++ +++.||.|||.|.|.+..+....+.|.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~-~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d 77 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNE-VKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKD 77 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECC-EeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCC
Confidence 35699999999999874 4689999999963 34578887 468999999999998765544679999999988865
Q ss_pred ceeEEEEEeccccccCceEEEEEEecCC------CCeEEEEEEEEEec
Q 008305 522 DKMGKCIMTLTRVMMEGEIQDSFHIDGT------KSGKLFLNLKWTPQ 563 (570)
Q Consensus 522 d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~ 563 (570)
++||++.++|+++..+...+.||+|.+. ..|+|+++++|.+.
T Consensus 78 ~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 78 SEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 6999999999999887788999999653 35999999999874
No 71
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.75 E-value=2.5e-17 Score=145.26 Aligned_cols=120 Identities=22% Similarity=0.378 Sum_probs=100.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC---------CCCeEEEEEE
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA---------STQHLTVRVF 335 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~---------~~~~L~~~v~ 335 (570)
.|+|+|++|++|+..+..|.+||||+++++ ++.++|++++++.||.|||+|.|.+... ....+.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL---NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC---CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999989999999999997 5678999999999999999999975422 1257999999
Q ss_pred eCCCCCCCCceEEEEEE-EccccC---CCeeeEEEEEeeccccccCCCcceeEEEEEEEEEec
Q 008305 336 DDEGPMLAPEIIGIAQI-ALKELE---PGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPF 394 (570)
Q Consensus 336 d~d~~~~~d~~lG~~~i-~l~~l~---~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~ 394 (570)
|++.. ++|++||++.+ ++..+. .+....+|++|.+ .+...|+|.+++.+.+.
T Consensus 79 d~d~~-~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSV-GKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCC-CCCccceEEEeeeeeecccCCCCCCCceEEEeec------CCCchhheeEEeEEEEe
Confidence 99998 88999999987 444443 2456789999953 34689999999999864
No 72
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.75 E-value=1.9e-17 Score=143.56 Aligned_cols=118 Identities=29% Similarity=0.470 Sum_probs=98.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCC--
Q 008305 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLA-- 343 (570)
Q Consensus 266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~-- 343 (570)
|+|+|++|++|+..+..+.+||||+++++ +.+.++|++++++.||.|||+|.|.+.. .+.|.++|||++.. +.
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~-~~~~ 76 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVD--GGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKF-KKKD 76 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEEC--CccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCC-CCCC
Confidence 78999999999999988999999999995 3567899999999999999999999975 57999999999987 54
Q ss_pred CceEEEEEEEccccCCCe-eeEEEEEeeccccccCCCcceeEEEEEE
Q 008305 344 PEIIGIAQIALKELEPGK-VKDVWLKLVKDVKVQRDTKNRGQVHLEL 389 (570)
Q Consensus 344 d~~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~~~~~~~~~G~l~l~l 389 (570)
|++||++.+++.++.... ....|++|.+... ...+...|+|.+++
T Consensus 77 d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~-~~~~~~~G~v~~~~ 122 (123)
T cd08382 77 QGFLGCVRIRANAVLPLKDTGYQRLDLRKLKK-SDNLSVRGKIVVSL 122 (123)
T ss_pred CceEeEEEEEHHHccccCCCccceeEeecCCC-CCCceEeeEEEEEe
Confidence 589999999999997544 3467999854321 23456789998875
No 73
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.75 E-value=1.4e-17 Score=143.36 Aligned_cols=104 Identities=17% Similarity=0.251 Sum_probs=89.3
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC----CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEEC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA----GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDH 516 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~----~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~ 516 (570)
.+.|.|+|++|+||+..+..|.+||||++++-.. ..++||++++++.||+|||+|.|.+... .+..|.|+|||.
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~ 92 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSV 92 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeC
Confidence 5889999999999999888889999999998432 2478999999999999999999998632 567899999999
Q ss_pred CCCCC-ceeEEEEEeccccccCc-eEEEEEEe
Q 008305 517 DTFGK-DKMGKCIMTLTRVMMEG-EIQDSFHI 546 (570)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~-~~~~w~~L 546 (570)
+..++ ++||++.++|+++.... ...+||+|
T Consensus 93 ~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 93 GPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 98765 69999999999995443 57889876
No 74
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.75 E-value=1.6e-17 Score=141.77 Aligned_cols=104 Identities=20% Similarity=0.300 Sum_probs=88.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-----CCceEeCcccCCCCCCeeeeEEEEEeec---CCCcEEEEEEEEC
Q 008305 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKK-----AGNRAKTRVAHDTLNPVWNQTFDFVVED---GQHEMLILDVYDH 516 (570)
Q Consensus 445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~~kT~v~~~t~nP~w~e~f~f~v~~---~~~~~L~i~V~d~ 516 (570)
.|+|+|++|+||+..+ .|.+||||+|++.+ ..++++|+++.++.||+|||+|+|.+.+ .....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999887 49999999999842 2245789999999999999999999974 2345799999999
Q ss_pred CCCCC-ceeEEEEEeccccccCceEEEEEEecCC
Q 008305 517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT 549 (570)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~ 549 (570)
+..++ ++||++.+++.++..++....|++|+..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 87765 6999999999999988888999999653
No 75
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.75 E-value=7.7e-18 Score=144.63 Aligned_cols=107 Identities=21% Similarity=0.421 Sum_probs=90.9
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEEEecCC-CCeEEEEEEeCC
Q 008305 262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFTVEDAS-TQHLTVRVFDDE 338 (570)
Q Consensus 262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~v~~~~-~~~L~~~v~d~d 338 (570)
..|.|.|+|++|+||+..+ .|.+||||++++.+...+ +++|++++++.||+|||+|.|.+.... ...|.+.|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4579999999999999988 789999999999975443 568999999999999999999985432 346899999999
Q ss_pred CCCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305 339 GPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369 (570)
Q Consensus 339 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 369 (570)
....++++||++.+++.++..+...+.||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 8622478999999999999877777899975
No 76
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.75 E-value=3.6e-17 Score=142.98 Aligned_cols=105 Identities=30% Similarity=0.490 Sum_probs=91.1
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD 517 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~ 517 (570)
.+.|+|+|++|+||+..+..+.+||||++++... ..++||++++++.||.|||+|.|.+... ....|.|.|||.+
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~ 94 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK 94 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence 5889999999999999998899999999998532 3578999999999999999999998532 4568999999998
Q ss_pred CC--C-CceeEEEEEeccccccCceEEEEEEec
Q 008305 518 TF--G-KDKMGKCIMTLTRVMMEGEIQDSFHID 547 (570)
Q Consensus 518 ~~--~-~d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (570)
.. + +++||++.++++++..+....+||+|.
T Consensus 95 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 95 SFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred cccCCCCceEEEEEEecccccccCCccceEECc
Confidence 74 3 479999999999998777789999874
No 77
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.75 E-value=2.7e-17 Score=143.52 Aligned_cols=117 Identities=26% Similarity=0.471 Sum_probs=100.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP 344 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d 344 (570)
.|+|+|++|++|+..+..+.+||||++.+...+.+.++|+++.++.||.|||+|.|.+.....+.|.|+|||++.. +.+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~-~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFV-GKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCC-CCC
Confidence 5889999999999999889999999998764334568999999999999999999999876567899999999988 889
Q ss_pred ceEEEEEEEccccCC---CeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305 345 EIIGIAQIALKELEP---GKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC 392 (570)
Q Consensus 345 ~~lG~~~i~l~~l~~---~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 392 (570)
++||++.++++++.. +...+.|++|. ..|++++.+.+.
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~----------~~g~i~l~~~~~ 121 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLD----------TQGRLLLRVSME 121 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcC----------CCCeEEEEEEEe
Confidence 999999999997643 34578899983 268999998885
No 78
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.75 E-value=1e-17 Score=140.94 Aligned_cols=100 Identities=29% Similarity=0.374 Sum_probs=89.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP 344 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d 344 (570)
.|.|+|++|++|+..+..+.+||||+++++ ++.++|+++.++.||+|||+|.|.+.++..+.|.|+|||++. +
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~----~ 73 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT----G 73 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEEC---CEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC----C
Confidence 378999999999998888999999999997 578899999999999999999999998777899999999864 7
Q ss_pred ceEEEEEEEccccCCCe--eeEEEEEeec
Q 008305 345 EIIGIAQIALKELEPGK--VKDVWLKLVK 371 (570)
Q Consensus 345 ~~lG~~~i~l~~l~~~~--~~~~w~~L~~ 371 (570)
++||++.++|.++.... ..+.|++|.+
T Consensus 74 ~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 74 KSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred CccEEEEEEHHHhhccccceeeeeEecCC
Confidence 89999999999997643 5789999953
No 79
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.75 E-value=2.3e-17 Score=149.42 Aligned_cols=109 Identities=32% Similarity=0.430 Sum_probs=93.5
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEee---cCCCcEEEEEEE
Q 008305 441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVE---DGQHEMLILDVY 514 (570)
Q Consensus 441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~---~~~~~~L~i~V~ 514 (570)
...|.|.|+|++|+||+..+..|.+||||++++.. +..++||++++++.||.|||+|.|.+. +..+..|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 35799999999999999999889999999999843 235789999999999999999999853 224568999999
Q ss_pred ECCCCCC-ceeEEEEEeccccccCceEEEEEEecCC
Q 008305 515 DHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT 549 (570)
Q Consensus 515 d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~ 549 (570)
|++..++ ++||++.+++.++...+....|+.+.+.
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~ 139 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE 139 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccCCCccccccCChH
Confidence 9998875 7999999999999877778899988653
No 80
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=2.6e-17 Score=143.44 Aligned_cols=104 Identities=27% Similarity=0.470 Sum_probs=87.6
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEeecC---CCcEEEEEEEEC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVEDG---QHEMLILDVYDH 516 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~V~d~ 516 (570)
.+.|.|+|++|+||+..+..+.+||||++++.+ ...++||++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~ 94 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY 94 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence 588999999999999998889999999999854 23577999999999999999999986432 457899999999
Q ss_pred CCCCC-ceeEEEEEeccccccCceEEEEEEec
Q 008305 517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHID 547 (570)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (570)
+..++ ++||++.++|++.. .....+||+|+
T Consensus 95 ~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 95 DRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 98765 69999999999943 33346899985
No 81
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.74 E-value=1.5e-17 Score=145.00 Aligned_cols=111 Identities=30% Similarity=0.438 Sum_probs=97.0
Q ss_pred ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEec---CCCCeEEEEEE
Q 008305 259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED---ASTQHLTVRVF 335 (570)
Q Consensus 259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~---~~~~~L~~~v~ 335 (570)
+....+.|.|+|++|++|+..+..+.+||||++++.+.+.+..+|++++++.||+|||+|.|.+.. .....|.++||
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 345678999999999999999888999999999997555667899999999999999999997532 23467999999
Q ss_pred eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305 336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV 370 (570)
Q Consensus 336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 370 (570)
|++.. +++++||++.++++++..+.....|+.|.
T Consensus 91 d~d~~-~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 91 DYDRF-SRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eCCCC-cCCcEeeEEEEecccccCCCCcceEEecC
Confidence 99998 88999999999999998888889999984
No 82
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.74 E-value=6.6e-17 Score=140.93 Aligned_cols=105 Identities=32% Similarity=0.532 Sum_probs=88.0
Q ss_pred ceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEE-ee--cCCCcEEEEEEEECC
Q 008305 443 RGVLSITVIAAENLPKVDLI-GKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFV-VE--DGQHEMLILDVYDHD 517 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~-v~--~~~~~~L~i~V~d~~ 517 (570)
.+.|+|+|++|+||+..+.. |.+||||++++.. ...+.||++++++.||.|||+|.|. +. +.....|.++|||++
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 57999999999999998875 8899999999853 3456799999999999999999994 43 223457999999998
Q ss_pred CCCC-ceeEEEEEeccccccC--ceEEEEEEec
Q 008305 518 TFGK-DKMGKCIMTLTRVMME--GEIQDSFHID 547 (570)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~--~~~~~w~~L~ 547 (570)
..++ ++||++.++|+++... ++...|.+|+
T Consensus 95 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 95 RYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 8765 6999999999998655 5678898875
No 83
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.74 E-value=1.6e-17 Score=144.01 Aligned_cols=110 Identities=26% Similarity=0.391 Sum_probs=96.9
Q ss_pred ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEE-Eec--CCCCeEEEEEE
Q 008305 259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFT-VED--ASTQHLTVRVF 335 (570)
Q Consensus 259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~-v~~--~~~~~L~~~v~ 335 (570)
|....+.|.|+|++|+||+..+..|.+||||++.+.+...++++|+++++ .||+|||+|.|. +.. .....|.|+||
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 44567899999999999999998889999999998877677889999887 999999999998 542 24568999999
Q ss_pred eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305 336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV 370 (570)
Q Consensus 336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 370 (570)
|++.. +++++||++.++|+++..+.....|++|.
T Consensus 90 ~~~~~-~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 90 GVERM-RKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ECCCc-ccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 99998 89999999999999998888899999984
No 84
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.74 E-value=1.8e-17 Score=139.65 Aligned_cols=94 Identities=20% Similarity=0.331 Sum_probs=82.1
Q ss_pred eEEEEEEEEecCCCCCCCC----CCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCC-CCeEEEEEEeCC
Q 008305 264 GTLDVKLVQAKELTNKDLI----GKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDAS-TQHLTVRVFDDE 338 (570)
Q Consensus 264 G~L~V~V~~A~~L~~~~~~----g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~-~~~L~~~v~d~d 338 (570)
|+|.|+|++|++|+..+.. +.+||||+++++ ++.++|+++++++||+|||+|.|.+.+.. ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~---~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG---RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC---CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7999999999999987632 358999999996 56789999999999999999999986543 357999999999
Q ss_pred CCCCCCceEEEEEEEccccCCCe
Q 008305 339 GPMLAPEIIGIAQIALKELEPGK 361 (570)
Q Consensus 339 ~~~~~d~~lG~~~i~l~~l~~~~ 361 (570)
.. ++|++||++.++|+++..+.
T Consensus 78 ~~-~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KF-SFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CC-CCCcceEEEEEEHHHHHhhC
Confidence 98 99999999999999997653
No 85
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.73 E-value=2.3e-17 Score=143.38 Aligned_cols=109 Identities=20% Similarity=0.440 Sum_probs=94.5
Q ss_pred cCCceEEEEEEEEecCCCCCC-CCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEE
Q 008305 260 LKPCGTLDVKLVQAKELTNKD-LIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRV 334 (570)
Q Consensus 260 ~~~~G~L~V~V~~A~~L~~~~-~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v 334 (570)
....|.|.|+|++|+||+..+ ..+.+||||++++.+... ..++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 10 NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 356789999999999999988 678999999999975433 468999999999999999999998643 346899999
Q ss_pred EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305 335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369 (570)
Q Consensus 335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 369 (570)
||++.. +++++||++.++++++..+.....||+|
T Consensus 90 ~d~~~~-~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 90 WHHDRF-GRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EeCCCC-cCCceeeEEEEecccccccCCCccEEEC
Confidence 999988 8899999999999999877778899986
No 86
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.73 E-value=4.3e-17 Score=141.55 Aligned_cols=112 Identities=28% Similarity=0.484 Sum_probs=97.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-ce
Q 008305 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DK 523 (570)
Q Consensus 445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~ 523 (570)
.|+|+|++|++|+..+..+.+||||+++++ ....+|++++++.||.|||+|.|.+.......|.|+|||++..++ ++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN--GQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDF 78 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEEC--CEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcE
Confidence 389999999999999888899999999985 367899999999999999999999987667789999999998875 79
Q ss_pred eEEEEEeccccccCceEEEEEEecC---------CCCeEEEEEE
Q 008305 524 MGKCIMTLTRVMMEGEIQDSFHIDG---------TKSGKLFLNL 558 (570)
Q Consensus 524 lG~~~i~l~~l~~~~~~~~w~~L~~---------~~~G~i~l~~ 558 (570)
||++.++++++........||.|.. ...|.|++.+
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 79 LGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred eEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999999987666789999964 2368888865
No 87
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.73 E-value=4.8e-17 Score=141.34 Aligned_cols=104 Identities=25% Similarity=0.488 Sum_probs=89.8
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEEC
Q 008305 443 RGVLSITVIAAENLPKVD-LIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDH 516 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~ 516 (570)
.+.|.|+|++|+||+..+ ..+.+||||++++... ..+++|++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 92 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH 92 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence 588999999999999988 7789999999998532 2468999999999999999999998642 356899999999
Q ss_pred CCCCC-ceeEEEEEeccccccCceEEEEEEe
Q 008305 517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHI 546 (570)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L 546 (570)
+..++ ++||++.++|+++..+.....||+|
T Consensus 93 ~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 93 DRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 98766 6999999999999877778999986
No 88
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.73 E-value=7.8e-17 Score=141.72 Aligned_cols=115 Identities=24% Similarity=0.452 Sum_probs=99.7
Q ss_pred ceEEEEEEEEeecCCCCCCC----------CCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEE
Q 008305 443 RGVLSITVIAAENLPKVDLI----------GKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILD 512 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~----------g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~ 512 (570)
.|.|+|+|++|++|...+.. |.+||||++.+++ ....+|++++++.||.|||+|.|.+. ....|.|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~-~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD-THIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC-EEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEE
Confidence 58999999999999987752 6789999999963 34578999999999999999999996 35789999
Q ss_pred EEECCCCCC-ceeEEEEEecccccc--CceEEEEEEecCCCCeEEEEEEEEEe
Q 008305 513 VYDHDTFGK-DKMGKCIMTLTRVMM--EGEIQDSFHIDGTKSGKLFLNLKWTP 562 (570)
Q Consensus 513 V~d~~~~~~-d~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~G~i~l~~~~~p 562 (570)
|||++..+. ++||++.++|+++.. ......|++|+ ++|+|+++++|+.
T Consensus 80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~ 130 (132)
T cd04014 80 VFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKG 130 (132)
T ss_pred EEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEec
Confidence 999987765 699999999999987 45578999998 4799999999975
No 89
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.73 E-value=5.7e-17 Score=140.83 Aligned_cols=111 Identities=29% Similarity=0.360 Sum_probs=97.3
Q ss_pred ccCCceEEEEEEEEecCCCCCC-CCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEE
Q 008305 259 ELKPCGTLDVKLVQAKELTNKD-LIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVF 335 (570)
Q Consensus 259 ~~~~~G~L~V~V~~A~~L~~~~-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~ 335 (570)
+....+.|.|+|++|++|+..+ ..+.+||||++++.+...+.++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 9 YDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 3456789999999999999988 578899999999986556678999999999999999999998653 2357999999
Q ss_pred eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305 336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV 370 (570)
Q Consensus 336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 370 (570)
|++.. +.+++||++.++|+++........|++|.
T Consensus 89 d~~~~-~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRF-SRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcC-CCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99998 88999999999999999888888999984
No 90
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.73 E-value=6.8e-17 Score=140.07 Aligned_cols=105 Identities=31% Similarity=0.453 Sum_probs=90.6
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEE-ee--cCCCcEEEEEEEECCC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFV-VE--DGQHEMLILDVYDHDT 518 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~-v~--~~~~~~L~i~V~d~~~ 518 (570)
.+.|.|+|++|+||+..+..|.+||||++.+.. ...++||+++++ .||+|||+|.|. +. +..+..|.++|||++.
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~ 93 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER 93 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC
Confidence 578999999999999999888999999988743 346789999887 999999999998 54 2256789999999998
Q ss_pred CCC-ceeEEEEEeccccccCceEEEEEEecC
Q 008305 519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHIDG 548 (570)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~ 548 (570)
.++ ++||++.++|+++........||+|++
T Consensus 94 ~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 94 MRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred cccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 865 799999999999988888899999873
No 91
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=7e-17 Score=140.53 Aligned_cols=118 Identities=32% Similarity=0.556 Sum_probs=99.3
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-
Q 008305 444 GVLSITVIAAENLPKVD-LIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK- 521 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~- 521 (570)
|.|+|+|++|+||+..+ ..+.+||||++.+++....++|+++.++.||.|||.|.|.+. ...+.|.|+|||++..++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCCCC
Confidence 78999999999999755 446789999999964236789999999999999999999987 457789999999988755
Q ss_pred ceeEEEEEeccccccCceEEE-EEEe--cCCCCeEEEEEEEEEe
Q 008305 522 DKMGKCIMTLTRVMMEGEIQD-SFHI--DGTKSGKLFLNLKWTP 562 (570)
Q Consensus 522 d~lG~~~i~l~~l~~~~~~~~-w~~L--~~~~~G~i~l~~~~~p 562 (570)
++||++.+++.++..+..... ++.+ .++..|+|+++++|.|
T Consensus 81 ~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred ceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 699999999999997776543 3333 4567899999999987
No 92
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.72 E-value=1.6e-16 Score=138.29 Aligned_cols=118 Identities=19% Similarity=0.353 Sum_probs=100.7
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCc
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKD 522 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d 522 (570)
..+|+|+|++|++|+..+..|.+||||++.+++ ..++|++++++.||.|||.|.|.+.+. ...|.|+|||++..+++
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~ 78 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG--ESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDE 78 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC--EEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 378999999999999998889999999999853 678999999999999999999988753 67899999999988778
Q ss_pred eeEEEEEeccccccCceEEEEEEec-------CCCCeEEEEEEEEEecCC
Q 008305 523 KMGKCIMTLTRVMMEGEIQDSFHID-------GTKSGKLFLNLKWTPQLV 565 (570)
Q Consensus 523 ~lG~~~i~l~~l~~~~~~~~w~~L~-------~~~~G~i~l~~~~~p~~~ 565 (570)
+||++.+++.++. ....++|+|. +...|+|.+++...+..+
T Consensus 79 ~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~~~ 126 (126)
T cd04046 79 FLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDDLT 126 (126)
T ss_pred ceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEccccC
Confidence 9999999998753 3445778883 335899999998877653
No 93
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.72 E-value=6.2e-17 Score=141.49 Aligned_cols=110 Identities=24% Similarity=0.392 Sum_probs=95.1
Q ss_pred cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEE
Q 008305 260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVF 335 (570)
Q Consensus 260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~ 335 (570)
....+.|.|+|++|+||+..+..+.+||||++++.+.+ ...++|++++++.||+|||+|.|.+... ....|.+.||
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 35678999999999999999988999999999998543 4578999999999999999999998532 3468999999
Q ss_pred eCCCC-CCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305 336 DDEGP-MLAPEIIGIAQIALKELEPGKVKDVWLKL 369 (570)
Q Consensus 336 d~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 369 (570)
|++.. .+++++||++.++++++..+.....|++|
T Consensus 92 ~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 92 NSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred ECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 99874 15799999999999999887778899987
No 94
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=1.1e-16 Score=141.03 Aligned_cols=116 Identities=27% Similarity=0.520 Sum_probs=98.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-----CceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCC
Q 008305 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKA-----GNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTF 519 (570)
Q Consensus 445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~ 519 (570)
.|+|+|++|+||+..+..|.+||||++++.+. ...++|++++++.||.|||+|.|.+.. ....|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCC
Confidence 37899999999999998899999999999643 125689999999999999999999864 356899999999988
Q ss_pred CC-ceeEEEEEeccccccCce------EEEEEEecC-----CCCeEEEEEEEEE
Q 008305 520 GK-DKMGKCIMTLTRVMMEGE------IQDSFHIDG-----TKSGKLFLNLKWT 561 (570)
Q Consensus 520 ~~-d~lG~~~i~l~~l~~~~~------~~~w~~L~~-----~~~G~i~l~~~~~ 561 (570)
++ ++||++.++++++..... ..+||+|++ ...|+|+++++|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 65 699999999999986543 368999974 2489999999873
No 95
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.72 E-value=1e-16 Score=139.71 Aligned_cols=105 Identities=31% Similarity=0.510 Sum_probs=90.6
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEee---cCCCcEEEEEEEECCC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVE---DGQHEMLILDVYDHDT 518 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~---~~~~~~L~i~V~d~~~ 518 (570)
.+.|.|+|++|+||+..+..+.+||||++++.. +..+.+|++++++.||.|||+|.|.+. ......|.++|||++.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~ 94 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR 94 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 478999999999999998889999999999842 345789999999999999999999752 2245679999999998
Q ss_pred CCC-ceeEEEEEeccccccCceEEEEEEec
Q 008305 519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHID 547 (570)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (570)
.++ ++||++.++++++........|+.|.
T Consensus 95 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 95 FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 866 69999999999998877789999985
No 96
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.72 E-value=9e-17 Score=138.87 Aligned_cols=112 Identities=24% Similarity=0.482 Sum_probs=96.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-cee
Q 008305 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DKM 524 (570)
Q Consensus 446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~l 524 (570)
|.|+|++|++|+..+..|.+||||++.+++ ....||++++++.||.|||.|.|.+.+ ....|.|+|||++..+. ++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN-EVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECC-EeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCEE
Confidence 789999999999999999999999999963 345799999999999999999999864 35789999999998866 799
Q ss_pred EEEEEeccccccCc-eEEEEEEecCC-----CCeEEEEEEE
Q 008305 525 GKCIMTLTRVMMEG-EIQDSFHIDGT-----KSGKLFLNLK 559 (570)
Q Consensus 525 G~~~i~l~~l~~~~-~~~~w~~L~~~-----~~G~i~l~~~ 559 (570)
|++.++++++.... ..++|++|++. ..|+|+++++
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999999887543 36899999763 3799998875
No 97
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.72 E-value=2e-16 Score=138.06 Aligned_cols=115 Identities=30% Similarity=0.460 Sum_probs=98.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-CceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-c
Q 008305 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKA-GNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-D 522 (570)
Q Consensus 445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d 522 (570)
.|+|+|++|++|+..+..+.+||||++.+.+. ...+||++++++.||.|||+|.|.+.......|.|+|||++..++ +
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998543 356899999999999999999999976556789999999998765 6
Q ss_pred eeEEEEEeccccccC---ceEEEEEEecCCCCeEEEEEEEEE
Q 008305 523 KMGKCIMTLTRVMME---GEIQDSFHIDGTKSGKLFLNLKWT 561 (570)
Q Consensus 523 ~lG~~~i~l~~l~~~---~~~~~w~~L~~~~~G~i~l~~~~~ 561 (570)
+||++.++|+++... .....|++|.+ +|++++++.+.
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~ 121 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSME 121 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEe
Confidence 999999999986533 24578999976 79999998875
No 98
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.71 E-value=1.1e-16 Score=139.47 Aligned_cols=116 Identities=32% Similarity=0.619 Sum_probs=97.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC----
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP---- 340 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~---- 340 (570)
.|+|+|++|++|+..+..|.+||||+++++ ...++|+++.++.||+|||+|.|.+..+ .+.|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG---KTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC---CEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 689999999999999988999999999986 4578999999999999999999988654 46899999999852
Q ss_pred ------CCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEE
Q 008305 341 ------MLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLEL 389 (570)
Q Consensus 341 ------~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l 389 (570)
.+.+++||++.+++.++... .+.|+.|.+.. .....+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~---~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRT---DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCC--CCeEEECccCC---CCCcEeEEEEEEC
Confidence 03689999999999988533 57899997542 3456799998864
No 99
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.71 E-value=4.1e-17 Score=138.55 Aligned_cols=101 Identities=29% Similarity=0.485 Sum_probs=88.8
Q ss_pred EEEEEEEecCCCCCCC-CCCCCcEEEEEEEeCCCceEEeeeeCCCCCCee-ecEEEEEEecC--CCCeEEEEEEeCCCCC
Q 008305 266 LDVKLVQAKELTNKDL-IGKSDPFVVIFVRPLRDRMKTSKTINNELNPIW-NEHFEFTVEDA--STQHLTVRVFDDEGPM 341 (570)
Q Consensus 266 L~V~V~~A~~L~~~~~-~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~W-ne~f~f~v~~~--~~~~L~~~v~d~d~~~ 341 (570)
|.|+|++|++|+..+. .|.+||||+++++ ++.++|+++++++||.| ||+|.|.+... ..+.|.|+|||++..
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~- 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTY- 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCC-
Confidence 5799999999998874 6889999999997 47889999999999999 99999998754 246899999999998
Q ss_pred CCCceEEEEEEEccccCC---CeeeEEEEEee
Q 008305 342 LAPEIIGIAQIALKELEP---GKVKDVWLKLV 370 (570)
Q Consensus 342 ~~d~~lG~~~i~l~~l~~---~~~~~~w~~L~ 370 (570)
+++++||++.++++++.. +...+.||+|.
T Consensus 77 ~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 889999999999999976 34578899985
No 100
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=7.9e-17 Score=136.79 Aligned_cols=100 Identities=21% Similarity=0.361 Sum_probs=85.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCC
Q 008305 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLA 343 (570)
Q Consensus 264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~ 343 (570)
|.|.|+|++|++|...+ ..||||+++++ +++.+|++.++ .||+|||+|.|.+.+... .|.++|||++.. .
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g---~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~-~L~v~V~dkd~~--~ 71 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQ---NVKSTTIAVRG-SQPCWEQDFMFEINRLDL-GLVIELWNKGLI--W 71 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEEC---CEEeEeeECCC-CCCceeeEEEEEEcCCCC-EEEEEEEeCCCc--C
Confidence 68999999999997644 46999999997 57788998877 599999999999987554 599999999965 9
Q ss_pred CceEEEEEEEccccCCCeee--EEEEEeeccc
Q 008305 344 PEIIGIAQIALKELEPGKVK--DVWLKLVKDV 373 (570)
Q Consensus 344 d~~lG~~~i~l~~l~~~~~~--~~w~~L~~~~ 373 (570)
|++||++.++|+++..+... .+||+|.+..
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~ 103 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV 103 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence 99999999999999865544 8999997543
No 101
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=6.3e-17 Score=141.03 Aligned_cols=107 Identities=27% Similarity=0.458 Sum_probs=90.4
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecC---CCCeEEEEEE
Q 008305 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDA---STQHLTVRVF 335 (570)
Q Consensus 261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~---~~~~L~~~v~ 335 (570)
...|.|.|+|++|++|+..+..+.+||||++++.+.. ..+++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 4578999999999999999888899999999997532 2467899999999999999999986432 3568999999
Q ss_pred eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305 336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369 (570)
Q Consensus 336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 369 (570)
|++.. +.+++||++.++|++.. ......|++|
T Consensus 93 d~~~~-~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 93 DYDRD-GENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred eCCCC-CCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 99998 88999999999999843 2335689987
No 102
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.71 E-value=5.6e-17 Score=141.30 Aligned_cols=115 Identities=25% Similarity=0.528 Sum_probs=97.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeC-CCCCCeeecEEEEEEecCC----CCeEEEEEEeCCC
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTIN-NELNPIWNEHFEFTVEDAS----TQHLTVRVFDDEG 339 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~nP~Wne~f~f~v~~~~----~~~L~~~v~d~d~ 339 (570)
+|+|+|++|++|+..+..+.+||||+++++. .+.++|++.. ++.||.|||+|.|.+.+.. ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 4899999999999988889999999999973 3567888864 6899999999999997663 5789999999998
Q ss_pred CCCCCceEEEEEEEccccCCCee-----eEEEEEeeccccccCCCcceeEEEE
Q 008305 340 PMLAPEIIGIAQIALKELEPGKV-----KDVWLKLVKDVKVQRDTKNRGQVHL 387 (570)
Q Consensus 340 ~~~~d~~lG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~G~l~l 387 (570)
. +.|++||++.+++.++..+.. ...|++|... .++..|.|++
T Consensus 79 ~-~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-----~g~~~G~~~~ 125 (125)
T cd04051 79 S-LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-----SGKPQGVLNF 125 (125)
T ss_pred C-CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-----CCCcCeEEeC
Confidence 7 789999999999999986543 4789999743 5788898874
No 103
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=6.4e-17 Score=137.53 Aligned_cols=102 Identities=25% Similarity=0.405 Sum_probs=89.7
Q ss_pred CCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCceeEEEEEeccccccC-ce
Q 008305 461 LIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMME-GE 539 (570)
Q Consensus 461 ~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~-~~ 539 (570)
.+|.+||||++.+++ ...++|++++++.||.|||.|.|.+.+.....|.|+|+|++..++++||++.++|+++... ..
T Consensus 9 ~~G~~dPYv~v~v~~-~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNG-KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECC-EEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence 468899999999963 3567999999999999999999999877778899999999988557999999999999654 34
Q ss_pred EEEEEEecCCCCeEEEEEEEEEec
Q 008305 540 IQDSFHIDGTKSGKLFLNLKWTPQ 563 (570)
Q Consensus 540 ~~~w~~L~~~~~G~i~l~~~~~p~ 563 (570)
..+||+|.+.+.|+|+++++|+|+
T Consensus 88 ~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 88 GQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred cceeEECCCCCCCEEEEEEEEecC
Confidence 589999998889999999999985
No 104
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.71 E-value=8.2e-17 Score=143.32 Aligned_cols=104 Identities=36% Similarity=0.647 Sum_probs=90.6
Q ss_pred cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--------------------------CceEEeeeeCCCCCCe
Q 008305 260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--------------------------DRMKTSKTINNELNPI 313 (570)
Q Consensus 260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--------------------------~~~~~T~~~~~t~nP~ 313 (570)
.++.+.|.|+|++|++|.+.|..|.+||||++.+.+.. .+.++|+++.+++||.
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 36899999999999999999989999999999996421 1347899999999999
Q ss_pred eecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEe
Q 008305 314 WNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKL 369 (570)
Q Consensus 314 Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 369 (570)
|||+|.|.+.+...+.|.|+|||++ +++||++.++++++.. ...+.||+|
T Consensus 104 WnE~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred cccEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 9999999998766789999999986 6899999999999984 346899976
No 105
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.71 E-value=2.4e-16 Score=136.90 Aligned_cols=106 Identities=27% Similarity=0.391 Sum_probs=91.7
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCC
Q 008305 443 RGVLSITVIAAENLPKVD-LIGKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDT 518 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~ 518 (570)
.+.|.|+|++|+||+..+ ..+.+||||++++.. +...++|++++++.||+|||.|.|.+... ....|.|+|||.+.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 92 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR 92 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence 578999999999999988 678899999999842 34567899999999999999999998643 34579999999988
Q ss_pred CCC-ceeEEEEEeccccccCceEEEEEEecC
Q 008305 519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHIDG 548 (570)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~ 548 (570)
.++ ++||++.++|+++........|++|+.
T Consensus 93 ~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 93 FSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred CCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 765 699999999999998888889999863
No 106
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.71 E-value=3.2e-16 Score=135.32 Aligned_cols=112 Identities=34% Similarity=0.603 Sum_probs=96.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-c
Q 008305 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-D 522 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d 522 (570)
|.|.|+|++|+||+..+..+.+||||++++++ ...+|++++++.||.|||+|.|.+.+ ....|.|+|||++..++ +
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~~~~~~-~~~~l~~~v~d~~~~~~~~ 77 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN--ARLQTHTIYKTLNPEWNKIFTFPIKD-IHDVLEVTVYDEDKDKKPE 77 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC--EeeecceecCCcCCccCcEEEEEecC-cCCEEEEEEEECCCCCCCc
Confidence 67999999999999999889999999999953 56799999999999999999999864 35789999999988655 7
Q ss_pred eeEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEEEE
Q 008305 523 KMGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNLKW 560 (570)
Q Consensus 523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~ 560 (570)
+||++.+++.++..+. .+||+|... ..|+|.+++++
T Consensus 78 ~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 78 FLGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999999986443 589999543 48999999886
No 107
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=1.8e-16 Score=135.99 Aligned_cols=113 Identities=35% Similarity=0.563 Sum_probs=97.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCc
Q 008305 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE 345 (570)
Q Consensus 266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~ 345 (570)
|+|+|++|++|+..+..+.+||||++++. +.+.++|+++.++.||.|||+|.|.+.+...+.+.|+|||++.. ++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~-~~~~ 77 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRG-GKDD 77 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--CCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCC-CCCC
Confidence 57999999999998888899999999996 34568999999999999999999999866667899999999988 8899
Q ss_pred eEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEE
Q 008305 346 IIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVH 386 (570)
Q Consensus 346 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~ 386 (570)
+||++.+++.++..+...+.|++|.+. ++...|.+.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~-----g~~~~~~~~ 113 (115)
T cd04040 78 LLGSAYIDLSDLEPEETTELTLPLDGQ-----GGGKLGAVF 113 (115)
T ss_pred ceEEEEEEHHHcCCCCcEEEEEECcCC-----CCccCceEE
Confidence 999999999999988888999999643 445556554
No 108
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.70 E-value=3.1e-16 Score=139.33 Aligned_cols=121 Identities=18% Similarity=0.290 Sum_probs=97.8
Q ss_pred EEEEEEecC--CCCCCCCCCCCcEEEEEEE-e-CCCceEEeeeeCCCCCCeeecEEEEEEecCC--------CCeEEEEE
Q 008305 267 DVKLVQAKE--LTNKDLIGKSDPFVVIFVR-P-LRDRMKTSKTINNELNPIWNEHFEFTVEDAS--------TQHLTVRV 334 (570)
Q Consensus 267 ~V~V~~A~~--L~~~~~~g~~dpyv~v~l~-~-~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~--------~~~L~~~v 334 (570)
.++|..|++ |+..+..+.+||||++++. + ...++.+|+++++|+||+|||+|.|.+.... ...|.|+|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 455555555 7777777889999999973 2 3456899999999999999999999996432 45699999
Q ss_pred EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305 335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC 392 (570)
Q Consensus 335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 392 (570)
||++.+.++|++||++.++|+.+..+.....|++|.. ......|+|++++...
T Consensus 85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-----~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-----GRKATGGKLEVKVRLR 137 (155)
T ss_pred EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-----CCCCcCCEEEEEEEec
Confidence 9999863579999999999999987766778999863 2456789999999986
No 109
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.70 E-value=3.3e-16 Score=137.35 Aligned_cols=102 Identities=26% Similarity=0.306 Sum_probs=83.4
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-C--ceEeCcccCCCCCCeeeeEEEEEeec--CCCcEEEEEEEECC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA-G--NRAKTRVAHDTLNPVWNQTFDFVVED--GQHEMLILDVYDHD 517 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~--~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~V~d~~ 517 (570)
.+.|.|+|++|+||+..+..|.+||||++++... . .++||++++++.||+|||+|.|.+.. ..+..|.|+|||++
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 4789999999999999998899999999999532 2 36789999999999999999999863 35678999999999
Q ss_pred CCCC-ceeEEEEEeccccccCceEEEEEEe
Q 008305 518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHI 546 (570)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L 546 (570)
..++ ++||++.++... .+...++|..+
T Consensus 94 ~~~~~~~iG~v~lg~~~--~g~~~~hW~~m 121 (136)
T cd08406 94 EDGKTPNVGHVIIGPAA--SGMGLSHWNQM 121 (136)
T ss_pred CCCCCCeeEEEEECCCC--CChhHHHHHHH
Confidence 8766 799999998764 23334555544
No 110
>PLN03008 Phospholipase D delta
Probab=99.70 E-value=1.6e-16 Score=170.93 Aligned_cols=130 Identities=25% Similarity=0.546 Sum_probs=111.3
Q ss_pred CceEEEEEEEEecCCCCCCC------------------------------------------CCCCCcEEEEEEEeCCCc
Q 008305 262 PCGTLDVKLVQAKELTNKDL------------------------------------------IGKSDPFVVIFVRPLRDR 299 (570)
Q Consensus 262 ~~G~L~V~V~~A~~L~~~~~------------------------------------------~g~~dpyv~v~l~~~~~~ 299 (570)
-.|.|.++|.+|++|+++|. .+++||||++.++ +.+
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg--~~r 89 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP--QAT 89 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC--Ccc
Confidence 47999999999999986321 2467999999996 345
Q ss_pred eEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCC
Q 008305 300 MKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDT 379 (570)
Q Consensus 300 ~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~ 379 (570)
..||++++++.||+|||+|.|.+.++. ..|.|+|||+|.+ + +++||++.+|++++..+...+.|++|.+.. .+..
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~-g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~--~kp~ 164 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVF-G-AQIIGTAKIPVRDIASGERISGWFPVLGAS--GKPP 164 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCcc-C-CceeEEEEEEHHHcCCCCceEEEEEccccC--CCCC
Confidence 679999999999999999999998865 4899999999999 4 689999999999999999999999998765 3455
Q ss_pred cceeEEEEEEEEEeccCCC
Q 008305 380 KNRGQVHLELLYCPFGTES 398 (570)
Q Consensus 380 ~~~G~l~l~l~~~p~~~~~ 398 (570)
+..|+|+++++|.|+....
T Consensus 165 k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 165 KAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCCcEEEEEEEEEEccccc
Confidence 6789999999999997654
No 111
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.70 E-value=1.7e-16 Score=140.88 Aligned_cols=102 Identities=25% Similarity=0.397 Sum_probs=86.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEee---------------cCCC
Q 008305 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVE---------------DGQH 506 (570)
Q Consensus 445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~---------------~~~~ 506 (570)
.|.|+|++|+||+. .+|.+||||++++.+. ..+++|+++++|.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37899999999998 5689999999999652 25679999999999999999999985 1123
Q ss_pred cEEEEEEEECCCCCC-ceeEEEEEeccccccC-ceEEEEEEecC
Q 008305 507 EMLILDVYDHDTFGK-DKMGKCIMTLTRVMME-GEIQDSFHIDG 548 (570)
Q Consensus 507 ~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~-~~~~~w~~L~~ 548 (570)
..|.|+|||++..++ ++||++.|++.++... .....||+|+.
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 579999999998755 6999999999999876 56789999954
No 112
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.69 E-value=9e-17 Score=140.76 Aligned_cols=91 Identities=29% Similarity=0.461 Sum_probs=77.9
Q ss_pred ceEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEE
Q 008305 443 RGVLSITVIAAENLPKVDL--IGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYD 515 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~--~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d 515 (570)
.+.|.|.|++|+||+..+. .+.+||||++++.... .++||++++++.||+|||+|.|.+... .+..|.|+|||
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 5789999999999999873 3558999999986432 367999999999999999999999643 46789999999
Q ss_pred CCCCCC-ceeEEEEEeccc
Q 008305 516 HDTFGK-DKMGKCIMTLTR 533 (570)
Q Consensus 516 ~~~~~~-d~lG~~~i~l~~ 533 (570)
++..++ ++||++.+++..
T Consensus 94 ~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 94 QDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCCCcCcceeceEEecCcC
Confidence 999876 799999999975
No 113
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=2.1e-16 Score=134.26 Aligned_cols=98 Identities=18% Similarity=0.329 Sum_probs=84.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCce
Q 008305 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDK 523 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~ 523 (570)
+.|.|.|++|++|+..+ ..||||++.++ +.+.+|++.++ .||.|||.|.|.+.+. +..|.|+|||++..++|+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g--~~k~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~~DD~ 74 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQ--NVKSTTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLIWDTL 74 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEEC--CEEeEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCcCCCc
Confidence 68999999999997644 45899999995 47889999877 5999999999999764 445999999999887899
Q ss_pred eEEEEEeccccccCceE--EEEEEecC
Q 008305 524 MGKCIMTLTRVMMEGEI--QDSFHIDG 548 (570)
Q Consensus 524 lG~~~i~l~~l~~~~~~--~~w~~L~~ 548 (570)
||++.++|.++...... .+||+|+.
T Consensus 75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 75 VGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred eEEEEEEhHHcccCCCCCCCccEecCh
Confidence 99999999999866544 89999964
No 114
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.69 E-value=7.8e-17 Score=140.49 Aligned_cols=93 Identities=39% Similarity=0.688 Sum_probs=85.0
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC
Q 008305 442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK 521 (570)
Q Consensus 442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~ 521 (570)
..|.|+|.|.+|.||...|..+++||||.+.++ +++.||+++++++||+|||.|+|.+.++ +..|.++|||+|.++.
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg--~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG--NQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSS 80 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEEC--CeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCc
Confidence 369999999999999999988999999999995 4888999999999999999999999875 7789999999999976
Q ss_pred -ceeEEEEEeccccccC
Q 008305 522 -DKMGKCIMTLTRVMME 537 (570)
Q Consensus 522 -d~lG~~~i~l~~l~~~ 537 (570)
|++|.++|+|..+...
T Consensus 81 dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLEA 97 (168)
T ss_pred ccccceeeeccHHHHHH
Confidence 7999999999988744
No 115
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=5.4e-16 Score=135.40 Aligned_cols=114 Identities=27% Similarity=0.476 Sum_probs=98.9
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCCCC-ceeEE
Q 008305 450 VIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTFGK-DKMGK 526 (570)
Q Consensus 450 v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~~~-d~lG~ 526 (570)
|++|+||+. ..|.+||||++++++ .+++|++++++.||+|||.|.|.+... ....|.|+|||++..++ ++||+
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~--~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRG--VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGS 77 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECC--EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEE
Confidence 689999998 678899999999953 578999999999999999999999754 56789999999998765 79999
Q ss_pred EEEeccccccCceEEEEEEecCC----CCeEEEEEEEEEecCCCC
Q 008305 527 CIMTLTRVMMEGEIQDSFHIDGT----KSGKLFLNLKWTPQLVLR 567 (570)
Q Consensus 527 ~~i~l~~l~~~~~~~~w~~L~~~----~~G~i~l~~~~~p~~~~~ 567 (570)
+.++++++..+.....|++|.+. ..|+|+++++|.|..-..
T Consensus 78 ~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 78 ATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDGAV 122 (127)
T ss_pred EEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCCcc
Confidence 99999999988888999999532 368999999999986543
No 116
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.69 E-value=1.8e-16 Score=137.79 Aligned_cols=104 Identities=39% Similarity=0.588 Sum_probs=92.5
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCC-CCCCeeecEEEEEEecC---CCCeEEEEEEeCCC
Q 008305 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINN-ELNPIWNEHFEFTVEDA---STQHLTVRVFDDEG 339 (570)
Q Consensus 264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~-t~nP~Wne~f~f~v~~~---~~~~L~~~v~d~d~ 339 (570)
|.|.|+|++|++|+..+..+.+||||+++++ .+.++|++..+ +.||.|||+|.|.+..+ ..+.|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR---TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEEC---CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 7899999999999998888899999999986 55678888764 89999999999999876 34689999999999
Q ss_pred CCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305 340 PMLAPEIIGIAQIALKELEPGKVKDVWLKLVK 371 (570)
Q Consensus 340 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 371 (570)
. ++|++||++.+++.++..+...+.|+.|.+
T Consensus 78 ~-~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 F-SDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred C-CCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 8 889999999999999988777889999854
No 117
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.69 E-value=1.5e-16 Score=144.08 Aligned_cols=109 Identities=23% Similarity=0.391 Sum_probs=94.5
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEe---cCCCCeEEEEEE
Q 008305 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVE---DASTQHLTVRVF 335 (570)
Q Consensus 261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~---~~~~~~L~~~v~ 335 (570)
.+.|.|.|+|++|++|+..+..+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+. +.....|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 4789999999999999999988999999999997532 35789999999999999999999853 223457999999
Q ss_pred eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305 336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV 370 (570)
Q Consensus 336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 370 (570)
|++.. +++++||++.++++++........|+.+.
T Consensus 104 d~d~~-~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 104 DHDKL-SSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred eCCCC-CCCceEEEEEEeCCccccCCCccccccCC
Confidence 99998 88999999999999998766778898874
No 118
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.69 E-value=3.5e-16 Score=135.63 Aligned_cols=110 Identities=30% Similarity=0.546 Sum_probs=93.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC---c
Q 008305 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK---D 522 (570)
Q Consensus 446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~---d 522 (570)
|+|+|++|++|+..+..+.+||||++++++ ...++|++++++.||.|||.|+|.+.. ...|.|+|||++..++ +
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG-GQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC-ccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCc
Confidence 789999999999999889999999999963 567899999999999999999999964 6799999999988753 5
Q ss_pred eeEEEEEeccccccCce-EEEEEEecCCC-------CeEEEEEE
Q 008305 523 KMGKCIMTLTRVMMEGE-IQDSFHIDGTK-------SGKLFLNL 558 (570)
Q Consensus 523 ~lG~~~i~l~~l~~~~~-~~~w~~L~~~~-------~G~i~l~~ 558 (570)
+||++.++++++..... ...||+|.... .|+|.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 99999999999986553 37799994322 67777765
No 119
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.69 E-value=1.9e-16 Score=139.55 Aligned_cols=106 Identities=22% Similarity=0.380 Sum_probs=92.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEEe-CCCceEEeeeeCCCCCCeeecEEEEEEecC---------------CCCe
Q 008305 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRP-LRDRMKTSKTINNELNPIWNEHFEFTVEDA---------------STQH 329 (570)
Q Consensus 266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~-~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~---------------~~~~ 329 (570)
|+|+|++|++|+.. ..|.+||||++++.. ...+.++|+++.++.||.|||+|.|.+... ..+.
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 678999999999983 224578999999999999999999998765 4568
Q ss_pred EEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccc
Q 008305 330 LTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDV 373 (570)
Q Consensus 330 L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 373 (570)
|.|+|||++.. +++++||++.+++.++........|++|.+..
T Consensus 80 l~i~V~d~~~~-~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMV-SGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcC-cCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 99999999998 89999999999999998777789999997654
No 120
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=2.2e-16 Score=135.98 Aligned_cols=103 Identities=28% Similarity=0.410 Sum_probs=91.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCC
Q 008305 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLA 343 (570)
Q Consensus 264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~ 343 (570)
|+|+|+|++|++|+..+..+.+||||+++++ +...++|+++.++.||.|||+|.|.+... .+.|.|+|||++.. ++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~-~~ 76 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--GIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKV-GK 76 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--CEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCC-CC
Confidence 7899999999999999888999999999996 23568899999999999999999988765 46899999999998 88
Q ss_pred CceEEEEEEEccccCCCeeeEEEEEeec
Q 008305 344 PEIIGIAQIALKELEPGKVKDVWLKLVK 371 (570)
Q Consensus 344 d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 371 (570)
|++||++.+++.++..+ ..+.||.+.+
T Consensus 77 d~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 77 DRSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CCeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 99999999999999877 4677888864
No 121
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.69 E-value=1.8e-16 Score=134.83 Aligned_cols=102 Identities=30% Similarity=0.545 Sum_probs=87.0
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeC-CCceEeCcccCCCCCCeeeeEEEEEeecC---CCcEEEEEEEECCC
Q 008305 444 GVLSITVIAAENLPKVDLI-GKADPFVVLQLKK-AGNRAKTRVAHDTLNPVWNQTFDFVVEDG---QHEMLILDVYDHDT 518 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---~~~~L~i~V~d~~~ 518 (570)
|.|+|+|++|+||+..+.. +.+||||++++.. +...++|++++++.||.|||.|.|.+... ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999887 8999999999853 24568999999999999999999988643 35689999999998
Q ss_pred CCC-ceeEEEEEeccccccCceEEEEEEecC
Q 008305 519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHIDG 548 (570)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~ 548 (570)
.++ ++||++.+++.++... .+|+++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~---~~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED---RNWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC---CCCCcccc
Confidence 865 7999999999999844 35777654
No 122
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.68 E-value=1.2e-15 Score=133.57 Aligned_cols=118 Identities=22% Similarity=0.386 Sum_probs=96.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC----------CceEEeeeeCCCCCCee-ecEEEEEEecCCCCeEEEE
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR----------DRMKTSKTINNELNPIW-NEHFEFTVEDASTQHLTVR 333 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~----------~~~~~T~~~~~t~nP~W-ne~f~f~v~~~~~~~L~~~ 333 (570)
+..|++++|++|+ ++..|++||||++.+.+.+ .+.++|+++++++||+| ||+|.|.+. ..+.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4678999999998 6778999999999997543 24789999999999999 999999985 34689999
Q ss_pred EEeCCCCCCC---CceEEEEEEEccccCCCe---eeEEEEEeeccccccCCCcceeEEEEEE
Q 008305 334 VFDDEGPMLA---PEIIGIAQIALKELEPGK---VKDVWLKLVKDVKVQRDTKNRGQVHLEL 389 (570)
Q Consensus 334 v~d~d~~~~~---d~~lG~~~i~l~~l~~~~---~~~~w~~L~~~~~~~~~~~~~G~l~l~l 389 (570)
|||++.. ++ +++||++.++++++..+. ....|++|.+.. ..+...|+|.+.+
T Consensus 79 V~D~~~~-~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~---~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAK-SRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT---PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCC-CCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC---CCCcEEEEEEEEe
Confidence 9998754 33 799999999999997542 366789987553 3567789998865
No 123
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.68 E-value=7e-16 Score=136.06 Aligned_cols=117 Identities=23% Similarity=0.422 Sum_probs=96.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecC---------CCcEEEEEEEE
Q 008305 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG---------QHEMLILDVYD 515 (570)
Q Consensus 445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~---------~~~~L~i~V~d 515 (570)
.|+|+|++|++|+..+..|.+||||++.++ ..++||++++++.||.|||.|.|.+... ....|.|+|||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~--~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d 79 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL--NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD 79 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC--CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence 689999999999999999999999999995 4678999999999999999999975322 12579999999
Q ss_pred CCCCCC-ceeEEEEE-ecccccc---CceEEEEEEecC--CCCeEEEEEEEEEec
Q 008305 516 HDTFGK-DKMGKCIM-TLTRVMM---EGEIQDSFHIDG--TKSGKLFLNLKWTPQ 563 (570)
Q Consensus 516 ~~~~~~-d~lG~~~i-~l~~l~~---~~~~~~w~~L~~--~~~G~i~l~~~~~p~ 563 (570)
++..++ ++||++.+ ++..+.. .....+||+|.. ...|+|.+++++.+.
T Consensus 80 ~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 80 QDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred CcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 998866 69999987 4444432 234579999963 458999999999875
No 124
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.68 E-value=4.6e-16 Score=136.68 Aligned_cols=110 Identities=29% Similarity=0.514 Sum_probs=95.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEeecC-CCcEEEEEEEECCCC
Q 008305 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVEDG-QHEMLILDVYDHDTF 519 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-~~~~L~i~V~d~~~~ 519 (570)
+.|+|+|++|+||+..+..+.+||||++.+.+ ...+++|++++++.||.|||+|.|.+... ....|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 78999999999999988888999999999963 23578999999999999999999998654 356899999999877
Q ss_pred CC-ceeEEEEEeccccccCceEEEEEEecCCCCeEE
Q 008305 520 GK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKL 554 (570)
Q Consensus 520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i 554 (570)
++ ++||++.++++++... ....||+|.+...|+.
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 65 6999999999999754 6688999998888864
No 125
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.68 E-value=3.7e-16 Score=138.38 Aligned_cols=93 Identities=30% Similarity=0.574 Sum_probs=85.2
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCC
Q 008305 263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPML 342 (570)
Q Consensus 263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~ 342 (570)
.|.|+|+|++|++|+..+. +.+||||+++++ ++.++|++++++.||+|||+|.|.+.++ .+.+.|+|||++.+ +
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g---~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~-~ 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG---NQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTF-S 74 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEEC---CEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCC-C
Confidence 4899999999999999887 889999999996 6789999999999999999999999876 57899999999998 8
Q ss_pred CCceEEEEEEEccccCCCe
Q 008305 343 APEIIGIAQIALKELEPGK 361 (570)
Q Consensus 343 ~d~~lG~~~i~l~~l~~~~ 361 (570)
.|++||.+.+++.++....
T Consensus 75 ~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 75 KDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCCEEEEEEEEHHHhhhhh
Confidence 9999999999999987543
No 126
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.68 E-value=4e-16 Score=132.76 Aligned_cols=98 Identities=21% Similarity=0.391 Sum_probs=85.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCC----CCeEEEEEEeCCCC
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDAS----TQHLTVRVFDDEGP 340 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~----~~~L~~~v~d~d~~ 340 (570)
.|+|+|++|++|. .|.+||||+++++ +++++|++++++.||.|||+|.|.+..+. ...|.|+|||++..
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 6899999999998 4789999999998 56788999999999999999999986432 46899999999998
Q ss_pred CCCCceEEEEEEEccccCCC---eeeEEEEEee
Q 008305 341 MLAPEIIGIAQIALKELEPG---KVKDVWLKLV 370 (570)
Q Consensus 341 ~~~d~~lG~~~i~l~~l~~~---~~~~~w~~L~ 370 (570)
++|++||++.++++++..+ .....|++|.
T Consensus 78 -~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~ 109 (111)
T cd04011 78 -RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT 109 (111)
T ss_pred -ccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence 8899999999999999655 4467899985
No 127
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.68 E-value=3.4e-16 Score=135.06 Aligned_cols=94 Identities=23% Similarity=0.419 Sum_probs=82.7
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEec-CCCCeEEEEEEeCCC
Q 008305 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED-ASTQHLTVRVFDDEG 339 (570)
Q Consensus 261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~-~~~~~L~~~v~d~d~ 339 (570)
...|.|.|+|++|++|+. +..+.+||||+++++ ++.++|++++++.||+|||+|.|.... ...+.|.|+|||++.
T Consensus 25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~---~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~ 100 (127)
T cd04032 25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFG---GQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN 100 (127)
T ss_pred CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC---CccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence 578999999999999984 667889999999996 458899999999999999999997533 356789999999999
Q ss_pred CCCCCceEEEEEEEccccCC
Q 008305 340 PMLAPEIIGIAQIALKELEP 359 (570)
Q Consensus 340 ~~~~d~~lG~~~i~l~~l~~ 359 (570)
. ++|++||++.+++.....
T Consensus 101 ~-s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 101 G-WDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred C-CCCCeeEEEEEEecCCce
Confidence 8 899999999999997653
No 128
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.68 E-value=4.9e-16 Score=136.25 Aligned_cols=109 Identities=23% Similarity=0.322 Sum_probs=90.4
Q ss_pred ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEE
Q 008305 259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRV 334 (570)
Q Consensus 259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v 334 (570)
|.+..+.|.|+|++|+||+..+..|.+||||++++.+.+.+ +++|+++++++||+|||+|.|.+.. .....|.|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 44567899999999999999988899999999999865443 5689999999999999999999864 3456799999
Q ss_pred EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305 335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV 370 (570)
Q Consensus 335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 370 (570)
||++.. +++++||++.+.... .+...+.|..+.
T Consensus 90 ~~~d~~-~~~~~iG~v~lg~~~--~g~~~~hW~~ml 122 (136)
T cd08406 90 AESTED-GKTPNVGHVIIGPAA--SGMGLSHWNQML 122 (136)
T ss_pred EeCCCC-CCCCeeEEEEECCCC--CChhHHHHHHHH
Confidence 999998 899999999997654 344455666654
No 129
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=4.4e-16 Score=138.49 Aligned_cols=103 Identities=19% Similarity=0.267 Sum_probs=86.7
Q ss_pred EEEEEEEEecCCCCCCCCC--------------CCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecC-CCCe
Q 008305 265 TLDVKLVQAKELTNKDLIG--------------KSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDA-STQH 329 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g--------------~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~-~~~~ 329 (570)
.|.|+|++|++|+.+|..+ .+||||++.++ ++..+|++++++.||+|||+|.|.+..+ ..+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~---g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC---CEeeecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999987443 68999999997 5567999999999999999999997544 3468
Q ss_pred EEEEEEeCCCCCCCCceEEEEEEEccccCCCee-------eEEEEEeec
Q 008305 330 LTVRVFDDEGPMLAPEIIGIAQIALKELEPGKV-------KDVWLKLVK 371 (570)
Q Consensus 330 L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~-------~~~w~~L~~ 371 (570)
|.|+|||+|.. ++|++||++.+++.++..... ...|+.+..
T Consensus 78 l~~~v~D~d~~-~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 78 IKIQIRDWDRV-GNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEEEEECCCC-CCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 99999999998 899999999999999876542 347777754
No 130
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.67 E-value=3.7e-16 Score=132.62 Aligned_cols=101 Identities=37% Similarity=0.624 Sum_probs=87.9
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEEeCCCceEeCcccCCCCCCee-eeEEEEEeecC--CCcEEEEEEEECCCCCC
Q 008305 446 LSITVIAAENLPKVDL-IGKADPFVVLQLKKAGNRAKTRVAHDTLNPVW-NQTFDFVVEDG--QHEMLILDVYDHDTFGK 521 (570)
Q Consensus 446 L~V~v~~a~~L~~~~~-~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w-~e~f~f~v~~~--~~~~L~i~V~d~~~~~~ 521 (570)
|.|+|++|+||+..+. .|.+||||++++++ .++||++++++.||.| ||.|.|.+... ....|.|+|||++..++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~--~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~ 78 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS--TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSA 78 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC--eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCC
Confidence 5799999999998874 68899999999964 7889999999999999 99999999653 34689999999998876
Q ss_pred -ceeEEEEEeccccccC---ceEEEEEEecC
Q 008305 522 -DKMGKCIMTLTRVMME---GEIQDSFHIDG 548 (570)
Q Consensus 522 -d~lG~~~i~l~~l~~~---~~~~~w~~L~~ 548 (570)
++||++.+++.++... .....||+|.+
T Consensus 79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 79 NDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 6999999999999873 45789999864
No 131
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.67 E-value=1.8e-16 Score=139.69 Aligned_cols=110 Identities=25% Similarity=0.431 Sum_probs=92.7
Q ss_pred ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEE
Q 008305 259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRV 334 (570)
Q Consensus 259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v 334 (570)
|....|.|.|+|++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 345678999999999999999988999999999998533 2467999999999999999999998643 346899999
Q ss_pred EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305 335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK 371 (570)
Q Consensus 335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 371 (570)
||++.. +.+++||++.+++.. .+.....|+++.+
T Consensus 88 ~d~d~~-~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 88 WDKDIG-KSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EeCCCC-CCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999988 889999999999986 3444578888754
No 132
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.66 E-value=2.8e-16 Score=138.83 Aligned_cols=105 Identities=28% Similarity=0.412 Sum_probs=87.5
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD 517 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~ 517 (570)
.+.|.|+|++|+||+..+..|.+||||++++..+. .++||++++++.||.|||+|.|.+... ....|.|+|||++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 47899999999999999988999999999985432 357899999999999999999998632 3557999999999
Q ss_pred CCCC-ceeEEEEEeccccccCceEEEEEEecCC
Q 008305 518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT 549 (570)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~ 549 (570)
..++ ++||++.+++.. ......+|++|...
T Consensus 94 ~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 94 RVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred CCCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 8866 699999999998 34456778877543
No 133
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.66 E-value=3.4e-16 Score=139.36 Aligned_cols=102 Identities=37% Similarity=0.543 Sum_probs=89.5
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---------------------------ceEeCcccCCCCCCee
Q 008305 441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---------------------------NRAKTRVAHDTLNPVW 493 (570)
Q Consensus 441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---------------------------~~~kT~v~~~t~nP~w 493 (570)
+..+.|.|+|++|+||+..+..|.+||||++.+.... ..++|++++++.||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 5689999999999999999999999999999985311 2478999999999999
Q ss_pred eeEEEEEeecCCCcEEEEEEEECCCCCCceeEEEEEeccccccCceEEEEEEe
Q 008305 494 NQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHI 546 (570)
Q Consensus 494 ~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L 546 (570)
||+|.|.+.......|.|+|||++ +++||++.++++++.. ...++||+|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999997666788999999997 6799999999999984 457899986
No 134
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.66 E-value=2.1e-15 Score=133.95 Aligned_cols=118 Identities=22% Similarity=0.380 Sum_probs=95.6
Q ss_pred EEEEEEeec--CCCCCCCCCCCcEEEEEEe---CCCceEeCcccCCCCCCeeeeEEEEEeecC--------CCcEEEEEE
Q 008305 447 SITVIAAEN--LPKVDLIGKADPFVVLQLK---KAGNRAKTRVAHDTLNPVWNQTFDFVVEDG--------QHEMLILDV 513 (570)
Q Consensus 447 ~V~v~~a~~--L~~~~~~g~~dpyv~v~~~---~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--------~~~~L~i~V 513 (570)
.++|..|++ |+..+..+.+||||++++. .+..+.||+++++|.||+|||+|.|.+... ....|.|+|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 445555555 7777777889999999972 245689999999999999999999999533 245799999
Q ss_pred EECCCC--CCceeEEEEEeccccccCceEEEEEEec-CC--CCeEEEEEEEEEecC
Q 008305 514 YDHDTF--GKDKMGKCIMTLTRVMMEGEIQDSFHID-GT--KSGKLFLNLKWTPQL 564 (570)
Q Consensus 514 ~d~~~~--~~d~lG~~~i~l~~l~~~~~~~~w~~L~-~~--~~G~i~l~~~~~p~~ 564 (570)
||++.+ ++++||++.++|+.+..+.....|++|- +. .+|+|+++++.+..-
T Consensus 85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p~ 140 (155)
T cd08690 85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREPL 140 (155)
T ss_pred EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCCC
Confidence 999986 3579999999999998888888899975 43 379999999987654
No 135
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.66 E-value=5.4e-16 Score=133.72 Aligned_cols=103 Identities=15% Similarity=0.253 Sum_probs=80.7
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCC-CCeeeeEEEEEeecC-CCcEEEEEEEECC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTL-NPVWNQTFDFVVEDG-QHEMLILDVYDHD 517 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~-nP~w~e~f~f~v~~~-~~~~L~i~V~d~~ 517 (570)
.+.|+|.|++|+||++.+..+.+||||+|++-. ...++||+++++|. ||+|||+|.|.+... .+-.|.|+|||++
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~ 92 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRS 92 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCC
Confidence 688999999999999876667789999999843 22478999999995 699999999999743 2346889999998
Q ss_pred CCCC-ceeEEEEEeccccccCceEEEEEEe
Q 008305 518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHI 546 (570)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L 546 (570)
..++ ++||++.++.++.. ....++|.+.
T Consensus 93 ~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m 121 (135)
T cd08692 93 SVRRKHFLGQVWISSDSSS-SEAVEQWKDT 121 (135)
T ss_pred CCcCCceEEEEEECCccCC-chhhhhHHHH
Confidence 7655 79999999997632 2233455443
No 136
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.66 E-value=1.2e-15 Score=133.00 Aligned_cols=109 Identities=29% Similarity=0.577 Sum_probs=91.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCC-----
Q 008305 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTF----- 519 (570)
Q Consensus 445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~----- 519 (570)
.|+|+|++|++|+..+..|.+||||+++++ ...++|++++++.||.|||.|.|.+..+ ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG--KTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC--CEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCccccc
Confidence 689999999999999988999999999995 3678999999999999999999998643 56899999998752
Q ss_pred -------CCceeEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEE
Q 008305 520 -------GKDKMGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNL 558 (570)
Q Consensus 520 -------~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~ 558 (570)
.+++||++.+++.++. +...+||.|+.. .+|+|.+++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 3479999999999874 345799999753 378888764
No 137
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.66 E-value=8.2e-16 Score=129.52 Aligned_cols=93 Identities=24% Similarity=0.404 Sum_probs=79.9
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecC-CCcEEEEEEEECCC
Q 008305 444 GVLSITVIAAENLPKVDLI----GKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG-QHEMLILDVYDHDT 518 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~~----g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-~~~~L~i~V~d~~~ 518 (570)
|+|.|+|++|++|+..+.. +.+||||+++++ ..++||++++++.||+|||.|.|.+.+. ....|.|+|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~--~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~ 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG--RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC--CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC
Confidence 6899999999999987632 358999999995 4678999999999999999999998654 34579999999998
Q ss_pred CCC-ceeEEEEEeccccccCc
Q 008305 519 FGK-DKMGKCIMTLTRVMMEG 538 (570)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~ 538 (570)
.++ ++||++.++|+++..+.
T Consensus 79 ~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 79 FSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCcceEEEEEEHHHHHhhC
Confidence 866 69999999999998654
No 138
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.66 E-value=2.5e-16 Score=137.98 Aligned_cols=109 Identities=21% Similarity=0.422 Sum_probs=89.4
Q ss_pred ccCCceEEEEEEEEecCCCCCCC--CCCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEE
Q 008305 259 ELKPCGTLDVKLVQAKELTNKDL--IGKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFTVEDA--STQHLTV 332 (570)
Q Consensus 259 ~~~~~G~L~V~V~~A~~L~~~~~--~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~ 332 (570)
|.+..|.|.|+|++|+||...+. .+.+||||++++.+.+.+ +++|+++++++||+|||+|.|.+... ....|.|
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 45678899999999999999873 345999999999975433 67899999999999999999998643 3567999
Q ss_pred EEEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305 333 RVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV 370 (570)
Q Consensus 333 ~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 370 (570)
+|||+|.. +++++||++.+++.. .+...+.|..+.
T Consensus 90 ~V~d~d~~-~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 90 EVLNQDSP-GQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred EEEeCCCC-cCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 99999998 999999999999975 344445665554
No 139
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.65 E-value=2.4e-15 Score=132.19 Aligned_cols=126 Identities=14% Similarity=0.294 Sum_probs=100.8
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC
Q 008305 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP 340 (570)
Q Consensus 261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~ 340 (570)
+-...|.|.|++|++|+.++ +|||.+.++ +....||+++.++.||.|+|.|.|..... ...+.|.||+.+..
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld--~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~ 79 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLD--KTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDK 79 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC-----CceEEEEEC--CEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCc
Confidence 34568999999999998754 799999998 34457999999999999999999986644 35799999865533
Q ss_pred C---CCCceEEEEEEEccccCCCeeeEEEEEeecccccc-----CCCcceeEEEEEEEEEec
Q 008305 341 M---LAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQ-----RDTKNRGQVHLELLYCPF 394 (570)
Q Consensus 341 ~---~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-----~~~~~~G~l~l~l~~~p~ 394 (570)
. .++++||.+.||+.++..+...+.||+|....... ......+.|+++++|.+.
T Consensus 80 ~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 80 KKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred cccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 1 26799999999999999998899999998654321 012456899999999864
No 140
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=8.3e-16 Score=130.67 Aligned_cols=101 Identities=26% Similarity=0.489 Sum_probs=86.5
Q ss_pred CCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCC-
Q 008305 281 LIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEP- 359 (570)
Q Consensus 281 ~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~- 359 (570)
..|.+||||+++++ +...++|+++.++.||+|||+|.|.+.+...+.|.|+|||++.. +|++||++.++|+++..
T Consensus 9 ~~G~~dPYv~v~v~--~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~--~d~~iG~~~v~L~~l~~~ 84 (111)
T cd04052 9 KTGLLSPYAELYLN--GKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR--HDPVLGSVSISLNDLIDA 84 (111)
T ss_pred cCCCCCceEEEEEC--CEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC--CCCeEEEEEecHHHHHhh
Confidence 46889999999996 23467999999999999999999999877677899999999987 78999999999999854
Q ss_pred CeeeEEEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305 360 GKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCP 393 (570)
Q Consensus 360 ~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p 393 (570)
+...+.|++|.+ ...|+|++++.|.|
T Consensus 85 ~~~~~~w~~L~~--------~~~G~i~~~~~~~p 110 (111)
T cd04052 85 TSVGQQWFPLSG--------NGQGRIRISALWKP 110 (111)
T ss_pred hhccceeEECCC--------CCCCEEEEEEEEec
Confidence 344679999942 46799999999987
No 141
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.65 E-value=2.3e-15 Score=132.73 Aligned_cols=110 Identities=17% Similarity=0.269 Sum_probs=90.8
Q ss_pred ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc---eEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEE
Q 008305 259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR---MKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVR 333 (570)
Q Consensus 259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~---~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~ 333 (570)
|....|.|.|+|++|+||+..+..|.+||||++++.+..++ +++|++++++.||+|||+|.|.+.. .....|.|.
T Consensus 10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~ 89 (138)
T cd08408 10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS 89 (138)
T ss_pred EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence 45678999999999999999998899999999999864332 5689999999999999999999864 345689999
Q ss_pred EEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305 334 VFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV 370 (570)
Q Consensus 334 v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 370 (570)
|||++.. +++++||++.+++.....+ ..+.|..+.
T Consensus 90 V~~~~~~-~~~~~iG~v~l~~~~~~~~-~~~hW~~~l 124 (138)
T cd08408 90 VYNKRKM-KRKEMIGWFSLGLNSSGEE-EEEHWNEMK 124 (138)
T ss_pred EEECCCC-CCCcEEEEEEECCcCCCch-HHHHHHHHH
Confidence 9999998 8999999999988754321 234676664
No 142
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.65 E-value=2.4e-15 Score=132.22 Aligned_cols=94 Identities=30% Similarity=0.493 Sum_probs=82.2
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-----CceEeCcccCCCCCCeeeeEEEEEeecC----CCcEEEEEE
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA-----GNRAKTRVAHDTLNPVWNQTFDFVVEDG----QHEMLILDV 513 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----~~~~kT~v~~~t~nP~w~e~f~f~v~~~----~~~~L~i~V 513 (570)
.+.|+|+|++|++|+..+..|.+||||++++.+. ..++||+++++|.||+|||+|.|.+... ....|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 4789999999999999888899999999998632 3578999999999999999999998642 356899999
Q ss_pred EECCCCCC-ceeEEEEEecccccc
Q 008305 514 YDHDTFGK-DKMGKCIMTLTRVMM 536 (570)
Q Consensus 514 ~d~~~~~~-d~lG~~~i~l~~l~~ 536 (570)
||++..++ ++||++.++|+++..
T Consensus 95 ~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 95 KDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EecCCCCCCcEeEEEEEeHHHCCc
Confidence 99998875 799999999999874
No 143
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.64 E-value=1.4e-15 Score=133.76 Aligned_cols=98 Identities=26% Similarity=0.338 Sum_probs=85.9
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC----CceEEeeeeCCCCCCeeecEEEEEEecC----CCCeEEE
Q 008305 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR----DRMKTSKTINNELNPIWNEHFEFTVEDA----STQHLTV 332 (570)
Q Consensus 261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~nP~Wne~f~f~v~~~----~~~~L~~ 332 (570)
...+.|.|+|++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|
T Consensus 13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence 4567999999999999998888999999999997533 3478999999999999999999998652 3458999
Q ss_pred EEEeCCCCCCCCceEEEEEEEccccCC
Q 008305 333 RVFDDEGPMLAPEIIGIAQIALKELEP 359 (570)
Q Consensus 333 ~v~d~d~~~~~d~~lG~~~i~l~~l~~ 359 (570)
+|||++.. +++++||++.++|+++..
T Consensus 93 ~V~d~d~~-~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 93 TVKDYDLL-GSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEecCCC-CCCcEeEEEEEeHHHCCc
Confidence 99999998 889999999999999974
No 144
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.64 E-value=2.9e-15 Score=132.41 Aligned_cols=102 Identities=28% Similarity=0.443 Sum_probs=83.9
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeec--CCCcEEEEEEEECC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVED--GQHEMLILDVYDHD 517 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~V~d~~ 517 (570)
.+.|.|+|++|+||+..+..|.+||||++++..+ ..++||++++++.||.|||.|.|.+.. .....|.|+|||++
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 5889999999999999888899999999998422 236789999999999999999999852 23568999999999
Q ss_pred CCCC-ceeEEEEEeccccccCceEEEEEEe
Q 008305 518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHI 546 (570)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L 546 (570)
..++ ++||++.+++.+. +....+|+++
T Consensus 94 ~~~~~~~lG~~~i~~~~~--~~~~~~w~~~ 121 (136)
T cd08405 94 RLSRNDLIGKIYLGWKSG--GLELKHWKDM 121 (136)
T ss_pred CCCCCcEeEEEEECCccC--CchHHHHHHH
Confidence 8866 6999999999875 3334455554
No 145
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=8.3e-16 Score=133.32 Aligned_cols=120 Identities=25% Similarity=0.290 Sum_probs=92.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP 344 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d 344 (570)
+|+|+|++|++|+..+..|.+||||+++++.. ....+|++++++.||+|||+|.|.+..+..+.|.|+|||++.. ++|
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~-~~d 78 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-KINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLL-GSD 78 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe-eccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCC-CCC
Confidence 47899999999999998899999999999732 2235788888999999999999998777778999999999998 899
Q ss_pred ceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305 345 EIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCP 393 (570)
Q Consensus 345 ~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p 393 (570)
++||++.+++++..... ..+|.-+. ......|.++....+.|
T Consensus 79 d~iG~~~i~l~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 79 DLIGETVIDLEDRFFSK-HRATCGLP------PTYEESGPNQWRDSLKP 120 (124)
T ss_pred ceeEEEEEeecccccch-HHHhccCC------CcccccCceecCcccCc
Confidence 99999999999876421 12222221 12235666666655543
No 146
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=2e-15 Score=134.28 Aligned_cols=107 Identities=23% Similarity=0.407 Sum_probs=89.7
Q ss_pred EEEEEEEeecCCCCCCC--------------CCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecC-CCcEEE
Q 008305 446 LSITVIAAENLPKVDLI--------------GKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG-QHEMLI 510 (570)
Q Consensus 446 L~V~v~~a~~L~~~~~~--------------g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-~~~~L~ 510 (570)
|.|+|++|++|+.++.. +.+||||++.+++ .+.||++++++.||+|||+|.|.+..+ ..+.|.
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g--~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG--QKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC--EeeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence 78999999999998744 3689999999964 567999999999999999999997543 456899
Q ss_pred EEEEECCCCCC-ceeEEEEEeccccccCce-------EEEEEEecCCCCeEE
Q 008305 511 LDVYDHDTFGK-DKMGKCIMTLTRVMMEGE-------IQDSFHIDGTKSGKL 554 (570)
Q Consensus 511 i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~-------~~~w~~L~~~~~G~i 554 (570)
|+|||++..++ |+||++.+++.++...+. ...|+.|.+...+..
T Consensus 80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~~ 131 (151)
T cd04018 80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREYS 131 (151)
T ss_pred EEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccccc
Confidence 99999998855 799999999999886653 268999988766543
No 147
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.64 E-value=6.8e-16 Score=136.23 Aligned_cols=104 Identities=20% Similarity=0.282 Sum_probs=83.5
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeec--CCCcEEEEEEEECC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVED--GQHEMLILDVYDHD 517 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~V~d~~ 517 (570)
.+.|.|+|++|+||+..+ .+.+||||++++.... .++||++++++.||+|||+|.|.+.. .....|.|+|||.+
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 478999999999999888 7889999999986432 36789999999999999999999953 24568999999999
Q ss_pred CCCC-ceeEEEEEeccccccCceEEEEEEec
Q 008305 518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHID 547 (570)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (570)
..++ ++||++.++......+....+|..+-
T Consensus 93 ~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 93 GVRKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred CCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 7765 69999999976544444445555543
No 148
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.64 E-value=5.1e-15 Score=128.56 Aligned_cols=117 Identities=24% Similarity=0.369 Sum_probs=94.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP 344 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d 344 (570)
.|.|+|++|+ |...+..+.+||||+++++. ...++|+++.++.||+|||+|.|.+.. .+.|.|+|||++.. +.|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~--~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~-~~~ 76 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDG--QPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTL-KAD 76 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECC--cccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCC-CCC
Confidence 6899999998 55555578899999999972 237899999999999999999999863 46899999999998 899
Q ss_pred ceEEEEEEEccccCCCee-----eEEEEEeeccccccCCCcceeEEEEEE
Q 008305 345 EIIGIAQIALKELEPGKV-----KDVWLKLVKDVKVQRDTKNRGQVHLEL 389 (570)
Q Consensus 345 ~~lG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~G~l~l~l 389 (570)
++||++.++++++..... ...|+++.... ...++..|+|++++
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN--KGSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC--CCcceeeeeEEEEe
Confidence 999999999999975322 23588886432 11447789998875
No 149
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.64 E-value=3.5e-15 Score=129.72 Aligned_cols=105 Identities=33% Similarity=0.603 Sum_probs=92.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCC-CCCCeeeeEEEEEeecC---CCcEEEEEEEECCCC
Q 008305 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHD-TLNPVWNQTFDFVVEDG---QHEMLILDVYDHDTF 519 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~w~e~f~f~v~~~---~~~~L~i~V~d~~~~ 519 (570)
|.|.|+|++|+||+..+..+.+||||+++++ ...++|++.++ +.||.|||.|.|.+..+ ....|.|+|||.+..
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~ 78 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR--TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNF 78 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEEC--CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccC
Confidence 6799999999999998888899999999995 35678888775 89999999999999765 357899999999887
Q ss_pred CC-ceeEEEEEeccccccCceEEEEEEecCCC
Q 008305 520 GK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTK 550 (570)
Q Consensus 520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 550 (570)
++ ++||++.++++++..++..+.|+.|....
T Consensus 79 ~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~ 110 (124)
T cd04049 79 SDDDFIGEATIHLKGLFEEGVEPGTAELVPAK 110 (124)
T ss_pred CCCCeEEEEEEEhHHhhhCCCCcCceEeeccc
Confidence 55 69999999999999888889999998764
No 150
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.64 E-value=6.3e-16 Score=136.62 Aligned_cols=107 Identities=23% Similarity=0.398 Sum_probs=90.3
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEe
Q 008305 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFD 336 (570)
Q Consensus 261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d 336 (570)
...+.|.|+|++|++|+..+..|.+||||++++.+.+. ...+|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 46789999999999999999889999999999975332 257899999999999999999998532 34578999999
Q ss_pred CCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305 337 DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV 370 (570)
Q Consensus 337 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 370 (570)
++.. +++++||++.+++.. .+.....|+++.
T Consensus 92 ~d~~-~~~~~iG~~~~~~~~--~~~~~~~w~~l~ 122 (136)
T cd08404 92 SDRV-TKNEVIGRLVLGPKA--SGSGGHHWKEVC 122 (136)
T ss_pred CCCC-CCCccEEEEEECCcC--CCchHHHHHHHH
Confidence 9998 899999999999998 344567788774
No 151
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.63 E-value=1e-15 Score=135.33 Aligned_cols=105 Identities=32% Similarity=0.533 Sum_probs=85.6
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD 517 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~ 517 (570)
.+.|.|+|++|++|+..+..|.+||||++++... ..+++|++++++.||.|||.|.|.+... ....|.|+|||++
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~ 93 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYD 93 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence 5889999999999999998899999999998532 2467899999999999999999998632 2357999999999
Q ss_pred CCCC-ceeEEEEEeccccccCceEEEEEEecCC
Q 008305 518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT 549 (570)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~ 549 (570)
..++ ++||++.+++... +....+|+++-..
T Consensus 94 ~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~ 124 (136)
T cd08402 94 RIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS 124 (136)
T ss_pred CCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence 8876 6999999999863 3344566665443
No 152
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.63 E-value=8.9e-16 Score=135.49 Aligned_cols=107 Identities=31% Similarity=0.510 Sum_probs=90.4
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeecCC--CcEEEEEEEECC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVEDGQ--HEMLILDVYDHD 517 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~--~~~L~i~V~d~~ 517 (570)
.+.|.|+|++|+||+..+..+.+||||++++.... .+++|++++++.||.|||+|.|.+.... ...|.|+|||.+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~ 92 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD 92 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence 47899999999999998888899999999996432 3679999999999999999999986542 578999999998
Q ss_pred CCCC-ceeEEEEEeccccccCceEEEEEEecCCCC
Q 008305 518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKS 551 (570)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~ 551 (570)
..++ ++||++.+++++ .+...++|++|...+.
T Consensus 93 ~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~ 125 (134)
T cd00276 93 SVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPR 125 (134)
T ss_pred CCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCC
Confidence 8655 699999999999 5556688998876543
No 153
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=3.7e-15 Score=128.30 Aligned_cols=109 Identities=23% Similarity=0.446 Sum_probs=93.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-c
Q 008305 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-D 522 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d 522 (570)
|.|.|+|++|++|+..+..+.+||||++++++ ...++|++++++.||.|||.|.|.+... .+.|.|+|||++..++ +
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG-IVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECC-EEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence 67999999999999998889999999999953 3678999999999999999999998754 5789999999998876 5
Q ss_pred eeEEEEEeccccccCceEEEEEEecCCCCeEEE
Q 008305 523 KMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLF 555 (570)
Q Consensus 523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~ 555 (570)
+||++.+++.++..+ ....||.|.+...+++.
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYDDEEERLK 110 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence 999999999999876 55788888776666554
No 154
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.63 E-value=2.3e-15 Score=131.04 Aligned_cols=111 Identities=26% Similarity=0.444 Sum_probs=93.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccC-CCCCCeeeeEEEEEeecCC----CcEEEEEEEECCCC
Q 008305 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAH-DTLNPVWNQTFDFVVEDGQ----HEMLILDVYDHDTF 519 (570)
Q Consensus 445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~-~t~nP~w~e~f~f~v~~~~----~~~L~i~V~d~~~~ 519 (570)
.|+|+|++|++|+..+..+.+||||++++++ ..+++|++.. ++.||.|||.|.|.+.... ...|.|+|||++..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~-~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~ 79 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP-SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPS 79 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC-CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCC
Confidence 3789999999999998889999999999964 4677898875 5899999999999997653 67899999999886
Q ss_pred CC-ceeEEEEEeccccccCceE-----EEEEEec---CCCCeEEEE
Q 008305 520 GK-DKMGKCIMTLTRVMMEGEI-----QDSFHID---GTKSGKLFL 556 (570)
Q Consensus 520 ~~-d~lG~~~i~l~~l~~~~~~-----~~w~~L~---~~~~G~i~l 556 (570)
+. ++||++.+++.++..+... ..||+|. ++..|.|++
T Consensus 80 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 80 LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 55 6999999999999976643 6899996 345788764
No 155
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.63 E-value=5.6e-15 Score=130.19 Aligned_cols=105 Identities=26% Similarity=0.423 Sum_probs=83.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD 517 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~ 517 (570)
.+.|.|+|++|++|+..+..|.+||||++++..+. .+++|+++++|.||.|||+|.|.+... ....|.|+|||++
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d 92 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHN 92 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 47899999999999999988999999999984322 457999999999999999999998532 3457999999999
Q ss_pred CCCC-ceeEEEEEeccccccCceEEEEEEecC
Q 008305 518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDG 548 (570)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~ 548 (570)
..++ ++||++.|+...... ....+|+.+..
T Consensus 93 ~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 93 VKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred CCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 8765 699999877644322 12456666543
No 156
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=5e-15 Score=126.98 Aligned_cols=109 Identities=39% Similarity=0.636 Sum_probs=94.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-cee
Q 008305 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DKM 524 (570)
Q Consensus 446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~l 524 (570)
|+|+|++|++|+..+..+.+||||++.+++ ...++|+++.++.||.|||+|.|.+.......+.|+|||++..++ ++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~-~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG-EKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC-CcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCce
Confidence 578999999999988888999999999964 456899999999999999999999976667889999999988765 699
Q ss_pred EEEEEeccccccCceEEEEEEecCCC---CeEEE
Q 008305 525 GKCIMTLTRVMMEGEIQDSFHIDGTK---SGKLF 555 (570)
Q Consensus 525 G~~~i~l~~l~~~~~~~~w~~L~~~~---~G~i~ 555 (570)
|++.+++.++..+.....|++|.+.+ .|.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~ 113 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVF 113 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcCCCCccCceEE
Confidence 99999999998888889999997542 45543
No 157
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.63 E-value=2.9e-16 Score=153.90 Aligned_cols=110 Identities=32% Similarity=0.567 Sum_probs=94.5
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEe---CCCceEeCcccCCCCCCeeeeEEEEEeecC-CCcEEEEEEEECCC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLK---KAGNRAKTRVAHDTLNPVWNQTFDFVVEDG-QHEMLILDVYDHDT 518 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~-~~~~L~i~V~d~~~ 518 (570)
...|+|+|.+|+||.++|.+|.+||||++.+- .+..++||++++.++||+|||+|+|.+... .+..|.|+|||+++
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 47899999999999999999999999999983 234678999999999999999999999643 56689999999998
Q ss_pred CCC-ceeEEEEEeccccccCceEEEEEEecCCCCeE
Q 008305 519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGK 553 (570)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~ 553 (570)
.++ |++|..++.++++..+ ..+.||.|-.+..|+
T Consensus 259 TsRNDFMGslSFgisEl~K~-p~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQKA-PVDGWYKLLSQEEGE 293 (683)
T ss_pred cccccccceecccHHHHhhc-chhhHHHHhhhhcCc
Confidence 876 8999999999998654 457899986655554
No 158
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.63 E-value=7.1e-15 Score=129.58 Aligned_cols=103 Identities=23% Similarity=0.365 Sum_probs=84.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-C---ceEeCcccCCCCCCeeeeEEEEEeec--CCCcEEEEEEEEC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA-G---NRAKTRVAHDTLNPVWNQTFDFVVED--GQHEMLILDVYDH 516 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~---~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~V~d~ 516 (570)
.+.|.|+|++|+||+..+..|.+||||++++... . .++||++++++.||+|||+|.|.+.. ..+..|.|+|||.
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 5899999999999999998899999999999532 1 35799999999999999999999963 3567899999999
Q ss_pred CCCCC-ceeEEEEEeccccccCceEEEEEEe
Q 008305 517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHI 546 (570)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L 546 (570)
+..++ ++||++.+++...-. .+..+|+.+
T Consensus 94 ~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~ 123 (138)
T cd08408 94 RKMKRKEMIGWFSLGLNSSGE-EEEEHWNEM 123 (138)
T ss_pred CCCCCCcEEEEEEECCcCCCc-hHHHHHHHH
Confidence 87765 699999999875421 223456554
No 159
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.63 E-value=2.5e-15 Score=129.80 Aligned_cols=100 Identities=27% Similarity=0.419 Sum_probs=86.8
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEEEeCC----CceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCC----CC
Q 008305 270 LVQAKELTNKDLIGKSDPFVVIFVRPLR----DRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEG----PM 341 (570)
Q Consensus 270 V~~A~~L~~~~~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~----~~ 341 (570)
.++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.....+.|.|+|||++. .
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~- 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL- 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC-
Confidence 4789999999988999999999998542 125899999999999999999998765556789999999997 6
Q ss_pred CCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305 342 LAPEIIGIAQIALKELEPGKVKDVWLKLV 370 (570)
Q Consensus 342 ~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 370 (570)
+++++||++.++++++..+.....|++|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 89999999999999999877778888883
No 160
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.63 E-value=2.4e-15 Score=132.91 Aligned_cols=110 Identities=23% Similarity=0.390 Sum_probs=90.6
Q ss_pred ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEE
Q 008305 259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRV 334 (570)
Q Consensus 259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v 334 (570)
+.+..|.|.|+|++|++|+..+..|.+||||++++.+.+ ...++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 345678999999999999998888999999999996432 235789999999999999999998753 2346899999
Q ss_pred EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305 335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK 371 (570)
Q Consensus 335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 371 (570)
||++.. +++++||++.+++.+. +...+.|+++..
T Consensus 90 ~d~~~~-~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 90 MDKDRL-SRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred EECCCC-CCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 999998 8899999999999886 334556766643
No 161
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.62 E-value=3.5e-15 Score=131.94 Aligned_cols=110 Identities=28% Similarity=0.414 Sum_probs=90.8
Q ss_pred ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEE
Q 008305 259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRV 334 (570)
Q Consensus 259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v 334 (570)
|.+..|.|.|+|++|++|+..+..|.+||||++++.+.+. ..++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4567899999999999999999889999999999975332 357899999999999999999998643 234799999
Q ss_pred EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305 335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK 371 (570)
Q Consensus 335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 371 (570)
||++.. ++|++||++.+++... +.....|+++..
T Consensus 90 ~d~~~~-~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 90 LDYDRI-GKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EeCCCC-CCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 999998 8999999999999864 333456766643
No 162
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.62 E-value=1.8e-15 Score=130.45 Aligned_cols=111 Identities=11% Similarity=0.193 Sum_probs=88.4
Q ss_pred cccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeeeCCCC-CCeeecEEEEEEecCCC-CeEEEE
Q 008305 258 LELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTINNEL-NPIWNEHFEFTVEDAST-QHLTVR 333 (570)
Q Consensus 258 ~~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~-nP~Wne~f~f~v~~~~~-~~L~~~ 333 (570)
.|.+..|.|.|+|++|+||++.+..+.+||||++++...+++ +++|+++++|+ ||+|||+|.|.+..... -.|.++
T Consensus 8 ~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~ 87 (135)
T cd08692 8 CFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIK 87 (135)
T ss_pred eecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEE
Confidence 456788999999999999998755567799999999865444 67899999995 69999999999975432 368899
Q ss_pred EEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305 334 VFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV 370 (570)
Q Consensus 334 v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 370 (570)
|||++.. +++++||++.+...+.. +...+.|.+..
T Consensus 88 v~d~~~~-~~n~~IG~v~lG~~~~~-~~~~~hW~~m~ 122 (135)
T cd08692 88 LYSRSSV-RRKHFLGQVWISSDSSS-SEAVEQWKDTI 122 (135)
T ss_pred EEeCCCC-cCCceEEEEEECCccCC-chhhhhHHHHH
Confidence 9999988 89999999999997642 22345666553
No 163
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.62 E-value=6.3e-15 Score=126.75 Aligned_cols=114 Identities=30% Similarity=0.520 Sum_probs=88.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCC--CCeEEEEEEeCCCCCCC
Q 008305 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDAS--TQHLTVRVFDDEGPMLA 343 (570)
Q Consensus 266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~--~~~L~~~v~d~d~~~~~ 343 (570)
|.|+|++|++|+.. +.+||||+++++ +.+.++|+++++ .||.|||+|.|.+.... ...|.+.+||.+.. ..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~-~~ 74 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLD--QVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSK-DR 74 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEEC--CEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccC-CC
Confidence 78999999999876 789999999997 234578999988 99999999999987543 24678888888766 55
Q ss_pred CceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305 344 PEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY 391 (570)
Q Consensus 344 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 391 (570)
+..+|. +++..+..+...+.|++|.+.. ......|+|++++.|
T Consensus 75 ~~~~g~--v~l~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~ 117 (117)
T cd08383 75 DIVIGK--VALSKLDLGQGKDEWFPLTPVD---PDSEVQGSVRLRARY 117 (117)
T ss_pred eeEEEE--EEecCcCCCCcceeEEECccCC---CCCCcCceEEEEEEC
Confidence 666665 5555565577789999996542 234678999999876
No 164
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.62 E-value=1.6e-16 Score=155.64 Aligned_cols=110 Identities=30% Similarity=0.524 Sum_probs=96.2
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecCC-CCeEEEEEEeCC
Q 008305 262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDAS-TQHLTVRVFDDE 338 (570)
Q Consensus 262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~~-~~~L~~~v~d~d 338 (570)
....|.|+|.+|+||.++|.+|.+||||++.+-|.++ .+++|++++.++||+|||+|.|.+...+ ...|.++|||+|
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 4557999999999999999999999999999986543 3678999999999999999999986443 357999999999
Q ss_pred CCCCCCceEEEEEEEccccCCCeeeEEEEEeeccc
Q 008305 339 GPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDV 373 (570)
Q Consensus 339 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 373 (570)
+. +++||+|..++.+++|.... .+.||.|..+.
T Consensus 258 rT-sRNDFMGslSFgisEl~K~p-~~GWyKlLsqe 290 (683)
T KOG0696|consen 258 RT-SRNDFMGSLSFGISELQKAP-VDGWYKLLSQE 290 (683)
T ss_pred cc-ccccccceecccHHHHhhcc-hhhHHHHhhhh
Confidence 99 99999999999999998765 68899997653
No 165
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.62 E-value=5.1e-16 Score=136.87 Aligned_cols=110 Identities=25% Similarity=0.446 Sum_probs=90.0
Q ss_pred ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEE
Q 008305 259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRV 334 (570)
Q Consensus 259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v 334 (570)
+.+..|.|+|+|++|++|+..+..|.+||||++++.+.+. ..++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4467899999999999999999889999999999975432 367899999999999999999987532 334699999
Q ss_pred EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305 335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK 371 (570)
Q Consensus 335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 371 (570)
||++.. +++++||++.+++... +.....|+++..
T Consensus 89 ~d~~~~-~~~~~IG~~~l~~~~~--~~~~~~w~~~~~ 122 (134)
T cd08403 89 VDYDRV-GHNELIGVCRVGPNAD--GQGREHWNEMLA 122 (134)
T ss_pred EECCCC-CCCceeEEEEECCCCC--CchHHHHHHHHH
Confidence 999998 8899999999998733 333456776643
No 166
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.62 E-value=8.4e-15 Score=127.12 Aligned_cols=102 Identities=31% Similarity=0.463 Sum_probs=84.4
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEe-e--cCCCcEEEEEEEEC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVV-E--DGQHEMLILDVYDH 516 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v-~--~~~~~~L~i~V~d~ 516 (570)
.+.|+|+|++|++|+..+..+.+||||++.+..+ ..+++|++++++.||.|||.|.|.. . +.....+.|+|||+
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 4789999999999999888889999999998532 3478999999999999999999963 2 22356899999999
Q ss_pred CCCCCceeEEEEEeccccccCceEEEEE
Q 008305 517 DTFGKDKMGKCIMTLTRVMMEGEIQDSF 544 (570)
Q Consensus 517 ~~~~~d~lG~~~i~l~~l~~~~~~~~w~ 544 (570)
+..++++||++.++++++..+.....|+
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 94 DRFGNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred CCcCCeeEEEEEEEcccCCCCcceEeec
Confidence 8875579999999999998766544444
No 167
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.61 E-value=9.7e-15 Score=129.32 Aligned_cols=91 Identities=38% Similarity=0.682 Sum_probs=82.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-c
Q 008305 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-D 522 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d 522 (570)
|.|+|+|++|+||+..+. +.+||||+++++ .+.++|++++++.||+|||.|.|.+.++ ...|.|+|||++.+++ +
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g--~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd 77 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG--NQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDD 77 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEEC--CEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence 789999999999998887 889999999995 4788999999999999999999999865 7789999999998866 7
Q ss_pred eeEEEEEeccccccCc
Q 008305 523 KMGKCIMTLTRVMMEG 538 (570)
Q Consensus 523 ~lG~~~i~l~~l~~~~ 538 (570)
+||++.+++.++....
T Consensus 78 ~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 78 SMGEAEIDLEPLVEAA 93 (145)
T ss_pred EEEEEEEEHHHhhhhh
Confidence 9999999999987543
No 168
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.61 E-value=5.3e-15 Score=129.92 Aligned_cols=107 Identities=32% Similarity=0.539 Sum_probs=93.1
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecC-CCCeEEEEEEeCCCC
Q 008305 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDA-STQHLTVRVFDDEGP 340 (570)
Q Consensus 264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~-~~~~L~~~v~d~d~~ 340 (570)
|.|+|+|++|++|+..+..+.+||||++.+.+.+ ...++|+++.++.||.|||+|.|.+... ..+.|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 7999999999999998888899999999997432 3578999999999999999999998654 346899999999987
Q ss_pred CCCCceEEEEEEEccccCCCeeeEEEEEeecc
Q 008305 341 MLAPEIIGIAQIALKELEPGKVKDVWLKLVKD 372 (570)
Q Consensus 341 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 372 (570)
+.+++||++.++++++... ..+.|++|.++
T Consensus 93 -~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 93 -TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred -CCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 8899999999999999865 57889999654
No 169
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.61 E-value=1.5e-14 Score=121.30 Aligned_cols=82 Identities=23% Similarity=0.457 Sum_probs=70.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeC------
Q 008305 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDD------ 337 (570)
Q Consensus 266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~------ 337 (570)
|.|+|++|+||+ +.+||||++++.+.+ ....+|+++.+|+||+|||+|.|.+. ..+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence 679999999995 558999999997543 34689999999999999999999986 367999999998
Q ss_pred -CCCCCCCceEEEEEEEcc
Q 008305 338 -EGPMLAPEIIGIAQIALK 355 (570)
Q Consensus 338 -d~~~~~d~~lG~~~i~l~ 355 (570)
|.. +.|+++|++.+.|.
T Consensus 74 ~d~~-~~d~~~G~g~i~Ld 91 (118)
T cd08686 74 LDGE-GTDAIMGKGQIQLD 91 (118)
T ss_pred cccc-CcccEEEEEEEEEC
Confidence 455 78999988888875
No 170
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.61 E-value=1.9e-15 Score=133.10 Aligned_cols=104 Identities=28% Similarity=0.402 Sum_probs=86.9
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD 517 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~ 517 (570)
.+.|.|+|++|+||+..+..|.+||||++++... ..+++|++++++.||.|||+|.|.+... ....|.|+|||++
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d 91 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD 91 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence 5899999999999999998899999999999632 3467999999999999999999998643 3568999999998
Q ss_pred CCCC-ceeEEEEEeccccccCceEEEEEEecC
Q 008305 518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDG 548 (570)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~ 548 (570)
..++ ++||++.+++.. .+....+|+++..
T Consensus 92 ~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 92 IGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred CCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 8765 799999999986 3334567877643
No 171
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.61 E-value=5.9e-15 Score=125.56 Aligned_cols=100 Identities=20% Similarity=0.318 Sum_probs=85.9
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCC----CcEEEEEEEECCC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ----HEMLILDVYDHDT 518 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~----~~~L~i~V~d~~~ 518 (570)
...|+|+|++|++|+ .|.+||||++++++ ++++|++++++.||.|||.|.|.+..+. ...|.|+|||++.
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~--~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGG--QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECC--EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 468999999999998 47899999999964 6779999999999999999999985432 4689999999998
Q ss_pred CCC-ceeEEEEEeccccccCc---eEEEEEEecC
Q 008305 519 FGK-DKMGKCIMTLTRVMMEG---EIQDSFHIDG 548 (570)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~---~~~~w~~L~~ 548 (570)
.+. ++||++.++|+++..+. .+.+|++|.+
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 765 79999999999997653 3689999864
No 172
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.61 E-value=1e-14 Score=128.31 Aligned_cols=118 Identities=18% Similarity=0.278 Sum_probs=97.4
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECC-CC-
Q 008305 442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHD-TF- 519 (570)
Q Consensus 442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~-~~- 519 (570)
....|.|.|.+|++|+.++ +|||++.+++ ....||+++.++.||.|+|.|.|.+... -..+.|.|++.+ ..
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~-~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~ 81 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDK-TLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKK 81 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECC-EEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccc
Confidence 3578999999999998754 7999999974 4567999999999999999999987543 467999997543 22
Q ss_pred ---CCceeEEEEEeccccccCceEEEEEEecCC-------------CCeEEEEEEEEEecCCC
Q 008305 520 ---GKDKMGKCIMTLTRVMMEGEIQDSFHIDGT-------------KSGKLFLNLKWTPQLVL 566 (570)
Q Consensus 520 ---~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~-------------~~G~i~l~~~~~p~~~~ 566 (570)
++++||.+.|+++++..+...++||+|.+. +.++|+++++|.+..++
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~l 144 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVL 144 (146)
T ss_pred cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeC
Confidence 236999999999999988888999999532 23799999999998765
No 173
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.61 E-value=5.2e-15 Score=130.43 Aligned_cols=104 Identities=22% Similarity=0.404 Sum_probs=90.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCC--CceEeCcccCCCCCCeeeeEEEEEeecC---------------CCcE
Q 008305 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKA--GNRAKTRVAHDTLNPVWNQTFDFVVEDG---------------QHEM 508 (570)
Q Consensus 446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~--~~~~kT~v~~~t~nP~w~e~f~f~v~~~---------------~~~~ 508 (570)
|+|.|++|+||+.. ..|.+||||+++++.. ..+++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57899999999988 7789999999999731 4678999999999999999999998754 4568
Q ss_pred EEEEEEECCCCCC-ceeEEEEEeccccccCceEEEEEEecCCC
Q 008305 509 LILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTK 550 (570)
Q Consensus 509 L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 550 (570)
|.|+|||++..++ ++||++.+++.++...+....||+|+...
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998754 79999999999998777789999997653
No 174
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.61 E-value=2.1e-15 Score=176.77 Aligned_cols=119 Identities=26% Similarity=0.586 Sum_probs=106.8
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCC-CcEEEEEEEECCCCC
Q 008305 442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ-HEMLILDVYDHDTFG 520 (570)
Q Consensus 442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-~~~L~i~V~d~~~~~ 520 (570)
-.|.|.|+|++|+||. +..|.+||||++.++. ..+.||++++++.||+|||.|+|.+.++. ++.|+|+|||++.++
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~-~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN-GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECC-CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence 4789999999999998 4468999999999974 34669999999999999999999998764 467999999999998
Q ss_pred CceeEEEEEeccccccCceEEEEEEecC--CCCeE---EEEEEEEEec
Q 008305 521 KDKMGKCIMTLTRVMMEGEIQDSFHIDG--TKSGK---LFLNLKWTPQ 563 (570)
Q Consensus 521 ~d~lG~~~i~l~~l~~~~~~~~w~~L~~--~~~G~---i~l~~~~~p~ 563 (570)
+|.+|.+.|++.++..++.+..||+|.+ ++.|+ |+++++|.+.
T Consensus 2055 kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~~ 2102 (2102)
T PLN03200 2055 KSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSNR 2102 (2102)
T ss_pred CCCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecCC
Confidence 8999999999999999999999999975 67899 9999999863
No 175
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.61 E-value=8e-15 Score=129.19 Aligned_cols=111 Identities=25% Similarity=0.440 Sum_probs=87.9
Q ss_pred ccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEE
Q 008305 259 ELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRV 334 (570)
Q Consensus 259 ~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v 334 (570)
|.+..|.|.|+|++|++|+..+..|.+||||++++.+.. .+.++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 345679999999999999999988999999999986422 2357899999999999999999998532 334699999
Q ss_pred EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeec
Q 008305 335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVK 371 (570)
Q Consensus 335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 371 (570)
||++.. +++++||++.+....... ...+.|..+.+
T Consensus 89 ~d~d~~-~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 89 YGHNVK-SSNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EeCCCC-CCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 999998 899999998866533332 12456777654
No 176
>PLN03008 Phospholipase D delta
Probab=99.61 E-value=6.6e-15 Score=158.57 Aligned_cols=125 Identities=24% Similarity=0.549 Sum_probs=106.8
Q ss_pred ccceEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEEeCCCc
Q 008305 441 IVRGVLSITVIAAENLPKVDL------------------------------------------IGKADPFVVLQLKKAGN 478 (570)
Q Consensus 441 ~~~g~L~V~v~~a~~L~~~~~------------------------------------------~g~~dpyv~v~~~~~~~ 478 (570)
.--|.|.++|++|++|+.++. .+.+||||+|.+++ .+
T Consensus 11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~-~r 89 (868)
T PLN03008 11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQ-AT 89 (868)
T ss_pred EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECC-cc
Confidence 446889999999999985221 24679999999963 55
Q ss_pred eEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCceeEEEEEeccccccCceEEEEEEecCC------CCe
Q 008305 479 RAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGT------KSG 552 (570)
Q Consensus 479 ~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G 552 (570)
+.||++++++.||+|||+|.|.|.++ ...|.|+|+|++.+++++||++.|++.++..+...+.|++|.+. +.|
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~ 168 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAET 168 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCc
Confidence 77999999999999999999999875 46899999999999989999999999999998888999999532 368
Q ss_pred EEEEEEEEEecCCCC
Q 008305 553 KLFLNLKWTPQLVLR 567 (570)
Q Consensus 553 ~i~l~~~~~p~~~~~ 567 (570)
+|+++++|+|....+
T Consensus 169 kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 169 AIFIDMKFTPFDQIH 183 (868)
T ss_pred EEEEEEEEEEccccc
Confidence 999999999987654
No 177
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.60 E-value=3.3e-15 Score=131.72 Aligned_cols=102 Identities=30% Similarity=0.457 Sum_probs=83.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHD 517 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~ 517 (570)
.+.|+|+|++|++|+..+..|.+||||++++... ..+++|++++++.||.|||+|.|.+... ....|.|+|||++
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~ 92 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYD 92 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence 5889999999999999998999999999998532 2467999999999999999999998532 3356999999999
Q ss_pred CCCC-ceeEEEEEeccccccCceEEEEEEe
Q 008305 518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHI 546 (570)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L 546 (570)
..++ ++||++.+++... .....+|+.+
T Consensus 93 ~~~~~~~IG~~~l~~~~~--~~~~~~w~~~ 120 (134)
T cd08403 93 RVGHNELIGVCRVGPNAD--GQGREHWNEM 120 (134)
T ss_pred CCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence 8875 7999999998732 2333556655
No 178
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.60 E-value=2.9e-15 Score=132.24 Aligned_cols=109 Identities=19% Similarity=0.344 Sum_probs=90.6
Q ss_pred cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEEE
Q 008305 260 LKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRVF 335 (570)
Q Consensus 260 ~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v~ 335 (570)
.+..+.|.|+|++|+||+..+ .+.+||||++++.+... .+++|++++++.||+|||+|.|.+.. .....|.|+||
T Consensus 11 ~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~ 89 (137)
T cd08409 11 NPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM 89 (137)
T ss_pred CCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence 345789999999999999988 78899999999986433 35789999999999999999999853 34468999999
Q ss_pred eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305 336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV 370 (570)
Q Consensus 336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 370 (570)
|++.. +++++||++.++......+...+.|..+.
T Consensus 90 ~~~~~-~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 90 QSGGV-RKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred eCCCC-CCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 99988 89999999999976665555566676664
No 179
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=3.7e-16 Score=148.74 Aligned_cols=228 Identities=26% Similarity=0.365 Sum_probs=169.2
Q ss_pred CCCcccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEE--EecC-CCCe
Q 008305 255 YSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFT--VEDA-STQH 329 (570)
Q Consensus 255 ~~~~~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~--v~~~-~~~~ 329 (570)
++.+|......+..++..|++|++++..+..|||++..+.+.-.+ +.+|++..+++||.|||+-.+. ..+. ....
T Consensus 84 ~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~ 163 (362)
T KOG1013|consen 84 FELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKV 163 (362)
T ss_pred hhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhh
Confidence 334555667788999999999999999999999999999864332 4678899999999999875543 3322 2345
Q ss_pred EEEEEEeCCCCCCCCceEEEEEEEccccCCCee--eEEEEEeecccc--ccCCCcceeEEEEEEEEEeccCCCCCCCCCC
Q 008305 330 LTVRVFDDEGPMLAPEIIGIAQIALKELEPGKV--KDVWLKLVKDVK--VQRDTKNRGQVHLELLYCPFGTESSLKNPFN 405 (570)
Q Consensus 330 L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~--~~~w~~L~~~~~--~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~ 405 (570)
+++.|.|.+.+ ...+++|+..+++..+.+... ...|+.-.-+.+ ...+...+|++.+++.|.
T Consensus 164 ~Rk~vcdn~~~-~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~------------- 229 (362)
T KOG1013|consen 164 LRKVVCDNDKK-THNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYS------------- 229 (362)
T ss_pred hheeeccCccc-ccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccC-------------
Confidence 78899999998 888999999999888865432 222322211100 011124566666666552
Q ss_pred CCccchhhhhhhcccCchhhhhhccccccccCCCcccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeC
Q 008305 406 SDYSLTTLEKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKT 482 (570)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT 482 (570)
....-+.|++.+|..|...|.+|.+||||..++.. ..-++||
T Consensus 230 -----------------------------------s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt 274 (362)
T KOG1013|consen 230 -----------------------------------STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKT 274 (362)
T ss_pred -----------------------------------cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccC
Confidence 22466899999999999999999999999999853 2346899
Q ss_pred cccCCCCCCeeeeEEEEEeec--CCCcEEEEEEEECCCCC-CceeEEEEEec
Q 008305 483 RVAHDTLNPVWNQTFDFVVED--GQHEMLILDVYDHDTFG-KDKMGKCIMTL 531 (570)
Q Consensus 483 ~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~V~d~~~~~-~d~lG~~~i~l 531 (570)
.+.++|.||.||+.|.|.+.. .....+.|.|||++..+ .|++|-+...+
T Consensus 275 ~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 275 QQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred cchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc
Confidence 999999999999999998853 35678999999999873 47888765543
No 180
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.59 E-value=2.7e-14 Score=125.09 Aligned_cols=111 Identities=23% Similarity=0.447 Sum_probs=90.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC-----------ceEeCcccCCCCCCee-eeEEEEEeecCCCcEEEEE
Q 008305 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAG-----------NRAKTRVAHDTLNPVW-NQTFDFVVEDGQHEMLILD 512 (570)
Q Consensus 445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-----------~~~kT~v~~~t~nP~w-~e~f~f~v~~~~~~~L~i~ 512 (570)
...|++++|+||+ .+..|.+||||++++..+. .++||++++++.||+| ||.|.|.+. .++.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 3678999999998 6778999999999996322 3689999999999999 999999985 35689999
Q ss_pred EEECCCCC----CceeEEEEEeccccccCc---eEEEEEEecCC-----CCeEEEEEE
Q 008305 513 VYDHDTFG----KDKMGKCIMTLTRVMMEG---EIQDSFHIDGT-----KSGKLFLNL 558 (570)
Q Consensus 513 V~d~~~~~----~d~lG~~~i~l~~l~~~~---~~~~w~~L~~~-----~~G~i~l~~ 558 (570)
|||++..+ +++||++.++++++.... ....||+|+.. -+|+|.+++
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 99976532 479999999999998654 35789999743 268887765
No 181
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.59 E-value=1.4e-14 Score=125.68 Aligned_cols=106 Identities=25% Similarity=0.395 Sum_probs=88.7
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEec---CCCCeEEEEEE
Q 008305 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVED---ASTQHLTVRVF 335 (570)
Q Consensus 261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~---~~~~~L~~~v~ 335 (570)
...+.|+|+|++|++|++.+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.... ...+.+.|+||
T Consensus 12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 4568999999999999998888899999999986432 346899999999999999999996322 23568999999
Q ss_pred eCCCCCCCCceEEEEEEEccccCCCeeeEEEEE
Q 008305 336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLK 368 (570)
Q Consensus 336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~ 368 (570)
|++.. .+++||++.++++++..+...+.|+.
T Consensus 92 d~~~~--~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 92 DEDRF--GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EcCCc--CCeeEEEEEEEcccCCCCcceEeecc
Confidence 99986 78999999999999998776666553
No 182
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.59 E-value=4.2e-15 Score=128.89 Aligned_cols=119 Identities=24% Similarity=0.377 Sum_probs=92.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-ce
Q 008305 445 VLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DK 523 (570)
Q Consensus 445 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~ 523 (570)
+|+|+|++|++|+..+..|.+||||++++++.....||++++++.||.|||+|.|.+..+..+.|.|+|||++..++ ++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 37899999999999998899999999999754445678888999999999999999876667899999999998865 79
Q ss_pred eEEEEEeccccccCceEEEEEEec--CCCCeEEEEEEEEEecC
Q 008305 524 MGKCIMTLTRVMMEGEIQDSFHID--GTKSGKLFLNLKWTPQL 564 (570)
Q Consensus 524 lG~~~i~l~~l~~~~~~~~w~~L~--~~~~G~i~l~~~~~p~~ 564 (570)
||++.+++++...... .++.-+. -...|.++..-.+.|..
T Consensus 81 iG~~~i~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (124)
T cd04037 81 IGETVIDLEDRFFSKH-RATCGLPPTYEESGPNQWRDSLKPSG 122 (124)
T ss_pred eEEEEEeecccccchH-HHhccCCCcccccCceecCcccCccc
Confidence 9999999998764211 1111121 12467777766666654
No 183
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.59 E-value=5.4e-14 Score=123.02 Aligned_cols=119 Identities=24% Similarity=0.415 Sum_probs=96.7
Q ss_pred EEEEEEEEecCCCCCC--CCCCCCcEEEEEEEeCC---CceEEeeeeCCCC-CCeeecEEEEEEecCCCCeEEEEEEeCC
Q 008305 265 TLDVKLVQAKELTNKD--LIGKSDPFVVIFVRPLR---DRMKTSKTINNEL-NPIWNEHFEFTVEDASTQHLTVRVFDDE 338 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~--~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~-nP~Wne~f~f~v~~~~~~~L~~~v~d~d 338 (570)
.|+|+|++|++|+..+ ..+.+||||++++...+ ...++|+++.++. ||+|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 56889999999997433 3568899887765 9999999999998766668999999999
Q ss_pred CCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305 339 GPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY 391 (570)
Q Consensus 339 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 391 (570)
.. ++++||++.++++++..+ ..|++|.... ......|.|.+.+.+
T Consensus 83 ~~--~~~~iG~~~~~l~~l~~g---~~~~~l~~~~---~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG--DDDFLGQACLPLDSLRQG---YRHVPLLDSK---GEPLELSTLFVHIDI 127 (128)
T ss_pred CC--CCcEeEEEEEEhHHhcCc---eEEEEecCCC---CCCCcceeEEEEEEE
Confidence 86 889999999999999764 3578886432 123567888888764
No 184
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=1.8e-14 Score=123.86 Aligned_cols=108 Identities=22% Similarity=0.408 Sum_probs=85.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCCCC-c
Q 008305 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTFGK-D 522 (570)
Q Consensus 446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~~~-d 522 (570)
|.|+|++|+||+.. |.+||||++++++ ...++|+++++ .||.|||+|.|.+... ....|.|.+||.+..++ .
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~-~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ-VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECC-EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence 78999999999976 7899999999964 34679999988 9999999999998653 23468888898876544 3
Q ss_pred eeEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEEEE
Q 008305 523 KMGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNLKW 560 (570)
Q Consensus 523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~ 560 (570)
.+|.+.+. .+..++..++||+|.+. ..|+|+++++|
T Consensus 77 ~~g~v~l~--~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGKVALS--KLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEec--CcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 67766554 44446667899999764 37999999976
No 185
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.58 E-value=2.1e-15 Score=133.07 Aligned_cols=109 Identities=25% Similarity=0.410 Sum_probs=93.0
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC--ceEEeeeeCCCCCCeeecEEEEEEecCC--CCeEEEEEEe
Q 008305 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD--RMKTSKTINNELNPIWNEHFEFTVEDAS--TQHLTVRVFD 336 (570)
Q Consensus 261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~nP~Wne~f~f~v~~~~--~~~L~~~v~d 336 (570)
+..|.|.|+|++|++|+..+..+.+||||++++.+... ..++|+++.++.||.|||+|.|.+.... ...|.|+|||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence 45689999999999999988888999999999985433 3578999999999999999999986543 5689999999
Q ss_pred CCCCCCCCceEEEEEEEccccCCCeeeEEEEEeecc
Q 008305 337 DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKD 372 (570)
Q Consensus 337 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 372 (570)
.+.. +.+++||++.+++++ .+...+.|++|...
T Consensus 91 ~~~~-~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 91 KDSV-GRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred cCCC-CCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 9997 889999999999999 45557889888643
No 186
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.57 E-value=1.9e-14 Score=124.18 Aligned_cols=93 Identities=27% Similarity=0.383 Sum_probs=80.0
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeec-CCCcEEEEEEEECCCC
Q 008305 441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVED-GQHEMLILDVYDHDTF 519 (570)
Q Consensus 441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~-~~~~~L~i~V~d~~~~ 519 (570)
...+.|+|+|++|++|+. +..+.+||||++++++ .++||++++++.||+|||+|.|.... .....|.|+|||++..
T Consensus 25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~--~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~ 101 (127)
T cd04032 25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG--QEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNG 101 (127)
T ss_pred CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC--ccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCC
Confidence 446899999999999984 6678899999999964 48899999999999999999997532 3567899999999998
Q ss_pred CC-ceeEEEEEecccccc
Q 008305 520 GK-DKMGKCIMTLTRVMM 536 (570)
Q Consensus 520 ~~-d~lG~~~i~l~~l~~ 536 (570)
++ ++||++.++|.....
T Consensus 102 s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 102 WDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCCeeEEEEEEecCCce
Confidence 65 799999999997653
No 187
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3.7e-14 Score=147.33 Aligned_cols=122 Identities=35% Similarity=0.523 Sum_probs=105.3
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-CceEeCcccCCCCCCeeeeEEEEEeec--CCCcEEEEEEEECCC
Q 008305 442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKA-GNRAKTRVAHDTLNPVWNQTFDFVVED--GQHEMLILDVYDHDT 518 (570)
Q Consensus 442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~w~e~f~f~v~~--~~~~~L~i~V~d~~~ 518 (570)
....|.|+|.+|++|+..+..|.+||||++++... ..+.+|++.++|+||.|||+|.|.+.. .....|.+.|||.++
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 35789999999999999997778999999999643 367899999999999999999999753 356789999999999
Q ss_pred CCC-ceeEEEEEeccccccCceEEEEEEecCC------CCeEEEEEEEEEec
Q 008305 519 FGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT------KSGKLFLNLKWTPQ 563 (570)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~ 563 (570)
+++ ++||++.++|..+........|.+|... ..|+|.+.++|.|.
T Consensus 245 fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPT 296 (421)
T ss_pred cccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecC
Confidence 977 7999999999998777667889998532 23799999999987
No 188
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.56 E-value=7.2e-14 Score=121.33 Aligned_cols=111 Identities=27% Similarity=0.438 Sum_probs=90.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-c
Q 008305 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-D 522 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d 522 (570)
..|.|+|.+|+ |...+..+.+||||++++++ ...++|++++++.||.|||.|.|.+.. .+.|.|+|||++..+. +
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~-~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~ 77 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDG-QPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADV 77 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECC-cccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCc
Confidence 36899999998 55555578899999999964 347899999999999999999999853 5789999999998865 6
Q ss_pred eeEEEEEeccccccCce-----EEEEEEecC------CCCeEEEEEE
Q 008305 523 KMGKCIMTLTRVMMEGE-----IQDSFHIDG------TKSGKLFLNL 558 (570)
Q Consensus 523 ~lG~~~i~l~~l~~~~~-----~~~w~~L~~------~~~G~i~l~~ 558 (570)
+||++.++|+++..... ...|+++.. ...|++++++
T Consensus 78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999999985543 345888842 2378888875
No 189
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.56 E-value=3.9e-14 Score=122.33 Aligned_cols=99 Identities=28% Similarity=0.435 Sum_probs=85.3
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEEeCCC-----ceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCC----C
Q 008305 449 TVIAAENLPKVDLIGKADPFVVLQLKKAG-----NRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDT----F 519 (570)
Q Consensus 449 ~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-----~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~----~ 519 (570)
..++|++|+..+..|.+||||++++.+.. ..++|++++++.||+|||+|.|.+.....+.|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 35899999999988999999999997543 25899999999999999999998765556789999999986 5
Q ss_pred CC-ceeEEEEEeccccccCceEEEEEEec
Q 008305 520 GK-DKMGKCIMTLTRVMMEGEIQDSFHID 547 (570)
Q Consensus 520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (570)
++ ++||++.++++++..+.....|++|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 44 79999999999999887777889983
No 190
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.54 E-value=1.2e-13 Score=120.69 Aligned_cols=114 Identities=27% Similarity=0.449 Sum_probs=93.7
Q ss_pred eEEEEEEEEeecCCCCC--CCCCCCcEEEEEEeC----CCceEeCcccCCCC-CCeeeeEEEEEeecCCCcEEEEEEEEC
Q 008305 444 GVLSITVIAAENLPKVD--LIGKADPFVVLQLKK----AGNRAKTRVAHDTL-NPVWNQTFDFVVEDGQHEMLILDVYDH 516 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~--~~g~~dpyv~v~~~~----~~~~~kT~v~~~t~-nP~w~e~f~f~v~~~~~~~L~i~V~d~ 516 (570)
-.|+|+|++|+||+..+ ..+.+||||++++.+ ...+++|+++.++. ||.|||+|.|.+..+....|.|+|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 36899999999999887 578899999999953 23568999988775 999999999999866667899999999
Q ss_pred CCCCCceeEEEEEeccccccCceEEEEEEecC-----CCCeEEEEEEEE
Q 008305 517 DTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDG-----TKSGKLFLNLKW 560 (570)
Q Consensus 517 ~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~~~~ 560 (570)
+..++++||++.++++++..+ .+|++|.+ ...|.|.+++++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 987557999999999998432 36788853 246899988875
No 191
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.53 E-value=2.7e-14 Score=167.73 Aligned_cols=121 Identities=15% Similarity=0.287 Sum_probs=104.0
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCC-CCeEEEEEEeCCC
Q 008305 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDAS-TQHLTVRVFDDEG 339 (570)
Q Consensus 261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~-~~~L~~~v~d~d~ 339 (570)
.-.|.|.|+|++|+||. +..|.+||||+++++. +.+.||++++++.||+|||+|+|.+.++. .+.+.++|||+|.
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 46899999999999998 4468999999999983 33678999999999999999999998775 3679999999999
Q ss_pred CCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeE---EEEEEEEEe
Q 008305 340 PMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQ---VHLELLYCP 393 (570)
Q Consensus 340 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~---l~l~l~~~p 393 (570)
+ + ++.+|.++|++.++..+.....||+|.+ +++..|+ |++++.|.+
T Consensus 2053 f-~-kd~~G~~~i~l~~vv~~~~~~~~~~L~~------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2053 F-G-KSSLGKVTIQIDRVVMEGTYSGEYSLNP------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred c-C-CCCCceEEEEHHHHhcCceeeeeeecCc------ccccCCCcceEEEEEEecC
Confidence 8 4 5589999999999999888999999953 3456677 999999853
No 192
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.50 E-value=3.3e-13 Score=113.20 Aligned_cols=105 Identities=26% Similarity=0.420 Sum_probs=78.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCC---CceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECC-----
Q 008305 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKA---GNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHD----- 517 (570)
Q Consensus 446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~----- 517 (570)
|.|+|++|+||+ +.+||||+++++.. ..+.||+++++|.||+|||+|+|.+.. ...|.+.|||++
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 579999999995 55899999998642 356899999999999999999999963 668999999983
Q ss_pred --CCCC-ceeEEEEEeccc--cccCceEEEEEEecCCCCeEEEEEEEE
Q 008305 518 --TFGK-DKMGKCIMTLTR--VMMEGEIQDSFHIDGTKSGKLFLNLKW 560 (570)
Q Consensus 518 --~~~~-d~lG~~~i~l~~--l~~~~~~~~w~~L~~~~~G~i~l~~~~ 560 (570)
..++ +.+|.+.+.|+. +...+..+.-+.|.+ =+|.++++|
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~---~~~~~s~~~ 118 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG---ITVNLSIKF 118 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEEEecC---EEEEEEEeC
Confidence 3344 689777777654 334444445555554 255556554
No 193
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.50 E-value=2.1e-13 Score=115.84 Aligned_cols=89 Identities=28% Similarity=0.502 Sum_probs=75.7
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEEEeCC---CceEEeeeeCCCCCCeeecEEEEEEecCC----CCeEEEEEEeCCCCCC
Q 008305 270 LVQAKELTNKDLIGKSDPFVVIFVRPLR---DRMKTSKTINNELNPIWNEHFEFTVEDAS----TQHLTVRVFDDEGPML 342 (570)
Q Consensus 270 V~~A~~L~~~~~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~nP~Wne~f~f~v~~~~----~~~L~~~v~d~d~~~~ 342 (570)
.++|++|+..+..|.+||||++++.+.. ...++|+++++++||+|| +|.|.+.+.. .+.|.|+|||++.. +
T Consensus 6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~-~ 83 (110)
T cd04047 6 QFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS-G 83 (110)
T ss_pred EEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC-C
Confidence 4689999999988999999999987432 235899999999999999 7888764321 56899999999998 8
Q ss_pred CCceEEEEEEEccccCCC
Q 008305 343 APEIIGIAQIALKELEPG 360 (570)
Q Consensus 343 ~d~~lG~~~i~l~~l~~~ 360 (570)
+|++||++.++++++..+
T Consensus 84 ~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 84 KHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCcEEEEEEEEHHHHhcC
Confidence 999999999999999854
No 194
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.47 E-value=2.9e-13 Score=108.88 Aligned_cols=85 Identities=34% Similarity=0.572 Sum_probs=76.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCc
Q 008305 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE 345 (570)
Q Consensus 266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~ 345 (570)
|+|+|++|++|...+..+.+||||++++.......++|+++.++.+|.|||+|.|.+.....+.|.|+|||++.. +.|+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~-~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSF-GKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSS-SSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCC-CCCC
Confidence 789999999999988788999999999995444569999999999999999999998877777899999999998 7799
Q ss_pred eEEEEE
Q 008305 346 IIGIAQ 351 (570)
Q Consensus 346 ~lG~~~ 351 (570)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999874
No 195
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.40 E-value=2e-12 Score=109.73 Aligned_cols=88 Identities=31% Similarity=0.527 Sum_probs=74.2
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEEeCCC----ceEeCcccCCCCCCeeeeEEEEEeecC----CCcEEEEEEEECCCC
Q 008305 448 ITVIAAENLPKVDLIGKADPFVVLQLKKAG----NRAKTRVAHDTLNPVWNQTFDFVVEDG----QHEMLILDVYDHDTF 519 (570)
Q Consensus 448 V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~----~~~kT~v~~~t~nP~w~e~f~f~v~~~----~~~~L~i~V~d~~~~ 519 (570)
+..++|++|+..+..|.+||||++++.+.. ..++|++++++.||.|| .|.|.+... ....|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 446799999999999999999999986432 36899999999999999 688876432 257899999999988
Q ss_pred CC-ceeEEEEEecccccc
Q 008305 520 GK-DKMGKCIMTLTRVMM 536 (570)
Q Consensus 520 ~~-d~lG~~~i~l~~l~~ 536 (570)
++ ++||++.++++++..
T Consensus 83 ~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 83 GKHDLIGEFETTLDELLK 100 (110)
T ss_pred CCCcEEEEEEEEHHHHhc
Confidence 66 699999999999973
No 196
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.38 E-value=3.7e-12 Score=102.41 Aligned_cols=83 Identities=39% Similarity=0.749 Sum_probs=73.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC-ceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-ce
Q 008305 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAG-NRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DK 523 (570)
Q Consensus 446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~ 523 (570)
|+|+|++|+||+..+..+.+||||++.+++.. ..++|++++++.+|.|+|.|.|.+.....+.|.|+|||++..++ ++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998533 46899999999999999999999877777779999999999885 69
Q ss_pred eEEEE
Q 008305 524 MGKCI 528 (570)
Q Consensus 524 lG~~~ 528 (570)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99874
No 197
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.2e-12 Score=133.82 Aligned_cols=122 Identities=31% Similarity=0.566 Sum_probs=101.9
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC-
Q 008305 262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP- 340 (570)
Q Consensus 262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~- 340 (570)
-...+.++|++|++|..+|..|++||||.+.++ +.+.+|+++...+||+|||.|.|.+++ .++.++++|||.|..
T Consensus 293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~---ktkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dl 368 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG---KTKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDL 368 (1283)
T ss_pred cceeeEEeeeecccceecccCCCCCCcEEEeec---ccchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccH
Confidence 345789999999999999999999999999998 667889999999999999999999996 457999999998865
Q ss_pred ---------CCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305 341 ---------MLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC 392 (570)
Q Consensus 341 ---------~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 392 (570)
...|||+|+..|.+..|... .+.||.|.+.. ......|-|++.+...
T Consensus 369 ksklrqkl~resddflgqtvievrtlsge--mdvwynlekrt---dksavsgairlhisve 424 (1283)
T KOG1011|consen 369 KSKLRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRT---DKSAVSGAIRLHISVE 424 (1283)
T ss_pred HHHHHHHhhhcccccccceeEEEEecccc--hhhhcchhhcc---chhhccceEEEEEEEE
Confidence 15789999999999988643 67899997653 2445678777666554
No 198
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.34 E-value=8.6e-13 Score=141.71 Aligned_cols=93 Identities=30% Similarity=0.465 Sum_probs=82.7
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCC
Q 008305 441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFG 520 (570)
Q Consensus 441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~ 520 (570)
+....++|++.+|-+|.+.|.+|..|||+.+.+++....-++..+.+|+||+|++.|++.+..+....+.++|||+|..+
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 34557889999999999999999999999999986555567788899999999999999998888888999999999987
Q ss_pred C-ceeEEEEEeccc
Q 008305 521 K-DKMGKCIMTLTR 533 (570)
Q Consensus 521 ~-d~lG~~~i~l~~ 533 (570)
. +.+|+..++|++
T Consensus 690 ~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 690 QDEKIGETTIDLEN 703 (1105)
T ss_pred ccchhhceehhhhh
Confidence 5 699999999886
No 199
>PLN02270 phospholipase D alpha
Probab=99.32 E-value=1.7e-11 Score=132.57 Aligned_cols=129 Identities=23% Similarity=0.436 Sum_probs=107.8
Q ss_pred CceEEEEEEEEecCCCCCC------------------CCCCCCcEEEEEEEeCCCceEEeeeeCCC-CCCeeecEEEEEE
Q 008305 262 PCGTLDVKLVQAKELTNKD------------------LIGKSDPFVVIFVRPLRDRMKTSKTINNE-LNPIWNEHFEFTV 322 (570)
Q Consensus 262 ~~G~L~V~V~~A~~L~~~~------------------~~g~~dpyv~v~l~~~~~~~~~T~~~~~t-~nP~Wne~f~f~v 322 (570)
-.|.|.|+|.+|++|++.+ ..+.+||||.+.++ +.+..||+++.+. .||+|||+|.+.+
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~a~v~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE--KARVGRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC--CcEEEEEeecCCCCCCCccccceEEee
Confidence 4799999999999998631 12468999999998 4678899999885 6999999999999
Q ss_pred ecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEeccCC
Q 008305 323 EDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTE 397 (570)
Q Consensus 323 ~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 397 (570)
.... ..+.|.|.|.|.+ ...+||.+.+|+.++..+...+.|+++.... .+..+...+|+++++|.|....
T Consensus 84 ah~~-~~v~f~vkd~~~~--g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~--~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 84 AHMA-SNIIFTVKDDNPI--GATLIGRAYIPVEEILDGEEVDRWVEILDND--KNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred ccCc-ceEEEEEecCCcc--CceEEEEEEEEHHHhcCCCccccEEeccCCC--CCcCCCCCEEEEEEEEEEcccC
Confidence 8765 5899999999998 5669999999999999999899999997653 2233445689999999997654
No 200
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.30 E-value=2.5e-11 Score=100.50 Aligned_cols=95 Identities=37% Similarity=0.607 Sum_probs=82.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCc
Q 008305 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE 345 (570)
Q Consensus 266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~ 345 (570)
|.|+|++|++|......+..+|||++++.+.+....+|+++.++.||.|||+|.|.+.....+.|.++|||.+.. +.+.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~-~~~~ 80 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRF-GRDD 80 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCc-cCCc
Confidence 689999999998877556789999999984322578999999999999999999999876567999999999987 6789
Q ss_pred eEEEEEEEccccCCCe
Q 008305 346 IIGIAQIALKELEPGK 361 (570)
Q Consensus 346 ~lG~~~i~l~~l~~~~ 361 (570)
++|.+.+++.++..+.
T Consensus 81 ~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 81 FIGQVTIPLSDLLLGG 96 (101)
T ss_pred eeEEEEEEHHHcccCc
Confidence 9999999999987654
No 201
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.29 E-value=2e-11 Score=105.46 Aligned_cols=95 Identities=21% Similarity=0.344 Sum_probs=80.1
Q ss_pred EEEEEEEecCCCCCC--CCCC--CCcEEEEEEEeCCCceEEeeeeCCCCC--CeeecEEEEEEec---------------
Q 008305 266 LDVKLVQAKELTNKD--LIGK--SDPFVVIFVRPLRDRMKTSKTINNELN--PIWNEHFEFTVED--------------- 324 (570)
Q Consensus 266 L~V~V~~A~~L~~~~--~~g~--~dpyv~v~l~~~~~~~~~T~~~~~t~n--P~Wne~f~f~v~~--------------- 324 (570)
|+|.|.+|++++..+ ..|. +||||++.+.+....+++|.+..+++| |.||+.|.|.+..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966533 3564 999999999865556789999999999 9999999988754
Q ss_pred --------CCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCCe
Q 008305 325 --------ASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGK 361 (570)
Q Consensus 325 --------~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~ 361 (570)
.....|.++|||.|.+ +.|++||+++++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~-s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKF-SPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECccc-CCCCcceEEEEEhhhccccc
Confidence 1245799999999999 99999999999999997654
No 202
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.28 E-value=3.1e-11 Score=99.74 Aligned_cols=101 Identities=41% Similarity=0.707 Sum_probs=86.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCc
Q 008305 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPE 345 (570)
Q Consensus 266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~ 345 (570)
|.|+|++|++|......+.++|||.+.+.. ...++|.++.++.||.|||.|.|.+.......+.++|||.+.. +.+.
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~-~~~~ 77 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRF-SKDD 77 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCC-CCCc
Confidence 468999999998866667899999999983 3678999999999999999999999864567899999999987 7789
Q ss_pred eEEEEEEEccccC-CCeeeEEEEEe
Q 008305 346 IIGIAQIALKELE-PGKVKDVWLKL 369 (570)
Q Consensus 346 ~lG~~~i~l~~l~-~~~~~~~w~~L 369 (570)
++|.+.+++.++. .......|++|
T Consensus 78 ~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 78 FLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred eeEEEEEeHHHhhhcCCcCcceecC
Confidence 9999999999998 55556677654
No 203
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=7.5e-12 Score=128.13 Aligned_cols=113 Identities=28% Similarity=0.565 Sum_probs=95.4
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCC-
Q 008305 441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTF- 519 (570)
Q Consensus 441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~- 519 (570)
..+..++++|.+|++|...|..|++||||.+.++ ..+.+|+++...+||+|||.|.|.|.+ ..+.|.+.|||.+..
T Consensus 292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~--ktkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dl 368 (1283)
T KOG1011|consen 292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG--KTKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDL 368 (1283)
T ss_pred ccceeeEEeeeecccceecccCCCCCCcEEEeec--ccchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccH
Confidence 5678999999999999999999999999999995 467799999999999999999999986 567899999998742
Q ss_pred -----------CCceeEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEE
Q 008305 520 -----------GKDKMGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNL 558 (570)
Q Consensus 520 -----------~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~ 558 (570)
++||||+..|.+..+ .++++-||.|+.. -+|-|++.+
T Consensus 369 ksklrqkl~resddflgqtvievrtl--sgemdvwynlekrtdksavsgairlhi 421 (1283)
T KOG1011|consen 369 KSKLRQKLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHI 421 (1283)
T ss_pred HHHHHHHhhhcccccccceeEEEEec--ccchhhhcchhhccchhhccceEEEEE
Confidence 357999999998876 4678899999743 367665543
No 204
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.25 E-value=4.1e-11 Score=103.48 Aligned_cols=94 Identities=24% Similarity=0.323 Sum_probs=78.2
Q ss_pred EEEEEEEeecCCCCC--CCCC--CCcEEEEEEeCC-CceEeCcccCCCCC--CeeeeEEEEEeecC--------------
Q 008305 446 LSITVIAAENLPKVD--LIGK--ADPFVVLQLKKA-GNRAKTRVAHDTLN--PVWNQTFDFVVEDG-------------- 504 (570)
Q Consensus 446 L~V~v~~a~~L~~~~--~~g~--~dpyv~v~~~~~-~~~~kT~v~~~t~n--P~w~e~f~f~v~~~-------------- 504 (570)
|+|.|.+|+|++..+ ..|. +||||++++.+. ..+++|.+.+++.| |.||++|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 789999999966543 3564 999999999763 57899999999999 99999999987642
Q ss_pred ---------CCcEEEEEEEECCCCCC-ceeEEEEEeccccccCce
Q 008305 505 ---------QHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGE 539 (570)
Q Consensus 505 ---------~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~ 539 (570)
....|.++|||.|.++. |+||.++++|..+.+...
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~ 126 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK 126 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence 24579999999999876 799999999999876543
No 205
>PLN02270 phospholipase D alpha
Probab=99.23 E-value=8.6e-11 Score=127.20 Aligned_cols=123 Identities=18% Similarity=0.339 Sum_probs=104.5
Q ss_pred cceEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEEeCCCceEeCcccCCC-CCCeeeeEEEEEee
Q 008305 442 VRGVLSITVIAAENLPKVD------------------LIGKADPFVVLQLKKAGNRAKTRVAHDT-LNPVWNQTFDFVVE 502 (570)
Q Consensus 442 ~~g~L~V~v~~a~~L~~~~------------------~~g~~dpyv~v~~~~~~~~~kT~v~~~t-~nP~w~e~f~f~v~ 502 (570)
--|.|.++|++|++|++.+ ..+.+||||.|.+.+ ....||+++.+. .||.|+|+|.+.|.
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK-ARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC-cEEEEEeecCCCCCCCccccceEEeec
Confidence 3589999999999998631 124679999999974 678899999885 69999999999998
Q ss_pred cCCCcEEEEEEEECCCCCCceeEEEEEeccccccCceEEEEEEecCC------CCeEEEEEEEEEecCCC
Q 008305 503 DGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSFHIDGT------KSGKLFLNLKWTPQLVL 566 (570)
Q Consensus 503 ~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~~~~ 566 (570)
.. -..+.|.|+|.+.++..+||.+.||..++..+...++||++.+. +..+|+++++|.|....
T Consensus 85 h~-~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 85 HM-ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred cC-cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccC
Confidence 75 47899999999999989999999999999999899999998542 23599999999997654
No 206
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.20 E-value=1.5e-10 Score=95.56 Aligned_cols=100 Identities=41% Similarity=0.684 Sum_probs=85.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-cee
Q 008305 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DKM 524 (570)
Q Consensus 446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~l 524 (570)
|.|.|++|++|......+.++|||.+.+.+ ...++|+++.++.||.||+.|.|.+.......+.|+||+.+..+. +++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~-~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG-KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc-CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCcee
Confidence 478999999998876677899999999964 467899999999999999999999975457789999999988764 699
Q ss_pred EEEEEeccccc-cCceEEEEEEe
Q 008305 525 GKCIMTLTRVM-MEGEIQDSFHI 546 (570)
Q Consensus 525 G~~~i~l~~l~-~~~~~~~w~~L 546 (570)
|++.+++.++. ......+|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999998 55566778764
No 207
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.19 E-value=5.1e-11 Score=128.34 Aligned_cols=293 Identities=19% Similarity=0.263 Sum_probs=173.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCC
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAP 344 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d 344 (570)
.++|.|++|-+|.+.|.+|.+|||+.+.++.. ...-++..+.+|+||++.+.|.+....+....+.++|||+|.. +.|
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~-~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~-~~d 691 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKK-RTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLE-AQD 691 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccc-hhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecc-ccc
Confidence 56799999999999999999999999999821 1124667889999999999999998888777899999999999 889
Q ss_pred ceEEEEEEEccccCC-------C-------eeeEEEEEeeccccc-c---CCC--------------cceeE--------
Q 008305 345 EIIGIAQIALKELEP-------G-------KVKDVWLKLVKDVKV-Q---RDT--------------KNRGQ-------- 384 (570)
Q Consensus 345 ~~lG~~~i~l~~l~~-------~-------~~~~~w~~L~~~~~~-~---~~~--------------~~~G~-------- 384 (570)
+.+|+..++|+.--. + .....|..-..+... . ..+ +..|+
T Consensus 692 ~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~~~i~~~g~~~~~d~~~ 771 (1105)
T KOG1326|consen 692 EKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEVSAIKWKGESDIYDEKE 771 (1105)
T ss_pred chhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCcceEEecChhhhhcccc
Confidence 999999999875321 0 011234332111100 0 000 00010
Q ss_pred ---EE---EEE------EEEeccCCCCCCCCCCCCccchhhh-hhhcccCchhhhh----hccccccccCCCcccceEEE
Q 008305 385 ---VH---LEL------LYCPFGTESSLKNPFNSDYSLTTLE-KSLKSETSRAEAA----ELGKIATQKKSDVIVRGVLS 447 (570)
Q Consensus 385 ---l~---l~l------~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~L~ 447 (570)
.. +.. .+.+.. ...-.+....-++.+-. ...++++.+.+.. +...-.-+..+..+....++
T Consensus 772 ~k~~~~~~L~~~~~r~~~~i~~~--~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~lr 849 (1105)
T KOG1326|consen 772 AKTIEVPHLGNAWERLALWILMN--QGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYELR 849 (1105)
T ss_pred cCCCCCcccchHHHHHHHHhhhh--cCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeEE
Confidence 00 000 011111 11111111100000000 0011111111111 00000111112235577899
Q ss_pred EEEEEeecCCCCCCC----CCCCcEEEEEEe-CCCceEeCcccCCCC--CCeeeeEEEEEeec-----------------
Q 008305 448 ITVIAAENLPKVDLI----GKADPFVVLQLK-KAGNRAKTRVAHDTL--NPVWNQTFDFVVED----------------- 503 (570)
Q Consensus 448 V~v~~a~~L~~~~~~----g~~dpyv~v~~~-~~~~~~kT~v~~~t~--nP~w~e~f~f~v~~----------------- 503 (570)
|.|..-.+....+.. ..+|-||+-.+- ..+.+++|.+.+++. .-.||-.|.|+...
T Consensus 850 viiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ws 929 (1105)
T KOG1326|consen 850 VIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSWS 929 (1105)
T ss_pred EEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhccc
Confidence 999888887765543 247999998875 345678888887753 34455555554320
Q ss_pred ------CCCcEEEEEEEECCCCCC-ceeEEEEEeccccccC----------------------ceEEEEEEecCC-----
Q 008305 504 ------GQHEMLILDVYDHDTFGK-DKMGKCIMTLTRVMME----------------------GEIQDSFHIDGT----- 549 (570)
Q Consensus 504 ------~~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~----------------------~~~~~w~~L~~~----- 549 (570)
..-..|.|+|||.|.+++ |+||..+++|++.... +.+..|+|+...
T Consensus 930 ~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~ 1009 (1105)
T KOG1326|consen 930 LDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAK 1009 (1105)
T ss_pred cccccccCchheEEEecccCccChhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCcc
Confidence 011359999999999987 5999999999986522 223568887422
Q ss_pred -CCeEEEEEEEEE
Q 008305 550 -KSGKLFLNLKWT 561 (570)
Q Consensus 550 -~~G~i~l~~~~~ 561 (570)
-.|++.+++...
T Consensus 1010 ~l~Gkvem~leil 1022 (1105)
T KOG1326|consen 1010 VLAGKVEMSLEIL 1022 (1105)
T ss_pred eecceeeeehhhh
Confidence 268888877653
No 208
>PLN02223 phosphoinositide phospholipase C
Probab=99.18 E-value=4e-10 Score=117.41 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=92.2
Q ss_pred ceEEEEEEEEecCCCC-----CCCCCCCCcEEEEEEEeC--CCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEE
Q 008305 263 CGTLDVKLVQAKELTN-----KDLIGKSDPFVVIFVRPL--RDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVF 335 (570)
Q Consensus 263 ~G~L~V~V~~A~~L~~-----~~~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~ 335 (570)
...|.|+|+.|+++.. .+....+||||+|.+... ....++|++..|+.||+|||+|.|.+..++--.|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 3679999999998751 122345799999999742 234567888899999999999999999888778999999
Q ss_pred eCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305 336 DDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY 391 (570)
Q Consensus 336 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 391 (570)
|+|.. ..|+++|++.+|+..|..|- .+++|....+ ..-....|.+.+.|
T Consensus 488 D~D~~-~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g---~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 488 DYEVS-TADAFCGQTCLPVSELIEGI---RAVPLYDERG---KACSSTMLLTRFKW 536 (537)
T ss_pred ecCCC-CCCcEEEEEecchHHhcCCc---eeEeccCCCc---CCCCCceEEEEEEe
Confidence 99987 78999999999999999875 3467754321 11123455555544
No 209
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.17 E-value=2.1e-10 Score=93.11 Aligned_cols=85 Identities=25% Similarity=0.454 Sum_probs=73.6
Q ss_pred HHHHHhHhH-hH-HHHHHHHHHHhHHHHHhh-cCCCCcceEEEeEEecCCCCCeEeEEEEEeccCCCceeEEEEEEEEcC
Q 008305 75 NYQLDKLWP-FI-NEAASELIRSNVEPILEQ-YRPSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMELEMQWDG 151 (570)
Q Consensus 75 N~~l~~~Wp-~~-~~~~~~~~~~~~~~~l~~-~~p~~l~~i~~~~~~lG~~pP~i~~i~~~~~~~~~~~~~~d~~~~~~~ 151 (570)
|.++++++- ++ ++.+.+.+++.++..|++ .+|+|++.+++++++||+.||.|+++++.+.+ .++++.+|+|++|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~-~~g~~~~~~dv~Y~G 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLD-PDGELWIEFDVSYSG 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccC-CCCCEEEEEEEEEcC
Confidence 677888655 44 458899999999999998 46999999999999999999999999998764 556799999999999
Q ss_pred CCcEEEEEe
Q 008305 152 NPNIVLDIR 160 (570)
Q Consensus 152 ~~~i~l~~~ 160 (570)
+..+.++++
T Consensus 80 ~~~l~l~t~ 88 (91)
T PF10296_consen 80 GFSLTLETK 88 (91)
T ss_pred CeEEEEEEE
Confidence 998888875
No 210
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.17 E-value=7.9e-11 Score=122.68 Aligned_cols=120 Identities=23% Similarity=0.338 Sum_probs=104.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCce
Q 008305 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDK 523 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~ 523 (570)
.-|.|.|.+|+||+..+..|..||||.|.+. .+..+||.++-+++.|.|.|.|+|.+. ..-..|.|-|||.|...++.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD-~E~v~RT~tv~ksL~PF~gEe~~~~iP-~~F~~l~fYv~D~d~~~D~~ 82 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD-QEEVCRTATVEKSLCPFFGEEFYFEIP-RTFRYLSFYVWDRDLKRDDI 82 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeec-chhhhhhhhhhhhcCCccccceEEecC-cceeeEEEEEeccccccccc
Confidence 4589999999999999999999999999997 467889999999999999999999996 34567999999999444479
Q ss_pred eEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEEEEEecCC
Q 008305 524 MGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNLKWTPQLV 565 (570)
Q Consensus 524 lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~~p~~~ 565 (570)
||.+.|.=+++......+.||.|... -+|+|++++++.+.-.
T Consensus 83 IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~ 129 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ 129 (800)
T ss_pred cceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccC
Confidence 99999999998877778899999643 3899999999987643
No 211
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.16 E-value=3.2e-10 Score=93.80 Aligned_cols=94 Identities=41% Similarity=0.789 Sum_probs=80.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-CceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCC-ce
Q 008305 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKA-GNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGK-DK 523 (570)
Q Consensus 446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~-d~ 523 (570)
+.+.|++|++|......+..+|||++++... ...++|+++.++.||.|||.|.|.+.......|.|+|||.+..+. .+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6789999999998776577899999999743 157899999999999999999999976557889999999987764 69
Q ss_pred eEEEEEeccccccCce
Q 008305 524 MGKCIMTLTRVMMEGE 539 (570)
Q Consensus 524 lG~~~i~l~~l~~~~~ 539 (570)
+|.+.+++.++..+..
T Consensus 82 ~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 82 IGQVTIPLSDLLLGGR 97 (101)
T ss_pred eEEEEEEHHHcccCcc
Confidence 9999999999876544
No 212
>PLN02952 phosphoinositide phospholipase C
Probab=99.08 E-value=1.8e-09 Score=115.05 Aligned_cols=106 Identities=22% Similarity=0.314 Sum_probs=86.7
Q ss_pred ceEEEEEEEEecCCCCC------CCCCCCCcEEEEEEEe--CCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEE
Q 008305 263 CGTLDVKLVQAKELTNK------DLIGKSDPFVVIFVRP--LRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRV 334 (570)
Q Consensus 263 ~G~L~V~V~~A~~L~~~------~~~g~~dpyv~v~l~~--~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v 334 (570)
...|.|+|+.|.+++.. +.....||||++.+-. ....+.+|+++.++.||+|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987531 1123459999999973 223467899999999999999999999887767899999
Q ss_pred EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeecc
Q 008305 335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKD 372 (570)
Q Consensus 335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 372 (570)
+|+|.. +.++++|++.+|+..|..|- .|++|...
T Consensus 549 ~D~D~~-~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~ 582 (599)
T PLN02952 549 REYDMS-EKDDFGGQTCLPVSELRPGI---RSVPLHDK 582 (599)
T ss_pred EecCCC-CCCCeEEEEEcchhHhcCCc---eeEeCcCC
Confidence 999987 78999999999999999876 47888643
No 213
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.08 E-value=2.1e-11 Score=126.59 Aligned_cols=129 Identities=33% Similarity=0.588 Sum_probs=106.4
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC----------------------------ceEEeeeeCCCCCCe
Q 008305 262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD----------------------------RMKTSKTINNELNPI 313 (570)
Q Consensus 262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~----------------------------~~~~T~~~~~t~nP~ 313 (570)
|.-.+.|.+.+|++|.++|.+|.+|||+...+.+..+ -.+-|++++.|+||+
T Consensus 112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk 191 (1103)
T KOG1328|consen 112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK 191 (1103)
T ss_pred CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence 5556778899999999999999999999987753210 024588999999999
Q ss_pred eecEEEEEEecCCCCeEEEEEEeCCCCC--------------------------------C---CCceEEEEEEEccccC
Q 008305 314 WNEHFEFTVEDASTQHLTVRVFDDEGPM--------------------------------L---APEIIGIAQIALKELE 358 (570)
Q Consensus 314 Wne~f~f~v~~~~~~~L~~~v~d~d~~~--------------------------------~---~d~~lG~~~i~l~~l~ 358 (570)
|+|.|.|.+.+..++.+.+.+||+|.-. + .|||+|+..||++++.
T Consensus 192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 9999999999999999999999988430 2 3899999999999998
Q ss_pred CCeeeEEEEEeeccccccCCCcceeEEEEEEEEEec
Q 008305 359 PGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPF 394 (570)
Q Consensus 359 ~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~ 394 (570)
... .++||+|.+.. ...+..|.+++.+...-.
T Consensus 272 ~~G-ld~WFkLepRS---~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 272 PDG-LDQWFKLEPRS---DKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred cch-HHHHhccCccc---ccccccceEEEEEEEeee
Confidence 754 68999998763 356789999999987644
No 214
>PLN02223 phosphoinositide phospholipase C
Probab=99.07 E-value=1.8e-09 Score=112.57 Aligned_cols=115 Identities=17% Similarity=0.330 Sum_probs=90.2
Q ss_pred ceEEEEEEEEeecCCCC-----CCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEE
Q 008305 443 RGVLSITVIAAENLPKV-----DLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVY 514 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~-----~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~ 514 (570)
...|.|+|+.|++++.. +....+||||+|.+.+ ...+++|.+..++.||+|||+|+|.+..+.-+.|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 56899999999998521 2234579999999964 234567877777899999999999999888889999999
Q ss_pred ECCCCCC-ceeEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEEEE
Q 008305 515 DHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNLKW 560 (570)
Q Consensus 515 d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~ 560 (570)
|++..++ +++|+..+|+..+..+- +.++|.+. ..-+|.+.+.|
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 9998755 79999999999987654 45677433 24567777776
No 215
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.97 E-value=6.9e-09 Score=110.43 Aligned_cols=122 Identities=19% Similarity=0.241 Sum_probs=92.0
Q ss_pred ceEEEEEEEEecCCCCC------CCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEE
Q 008305 263 CGTLDVKLVQAKELTNK------DLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRV 334 (570)
Q Consensus 263 ~G~L~V~V~~A~~L~~~------~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v 334 (570)
..+|.|+|+.+.++... +.....||||+|.+-..+ ...++|++..++.||.|||+|.|.+..++--.|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46899999999987421 222347999999997433 3357888889999999999999999888877899999
Q ss_pred EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305 335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY 391 (570)
Q Consensus 335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 391 (570)
+|+|.. ..|+++|++.+|+..|..|-. .++|....+ ..-....|.+++.|
T Consensus 548 ~d~d~~-~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G---~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDIN-EKDDFGGQTCLPVSEIRQGIH---AVPLFNRKG---VKYSSTRLLMRFEF 597 (598)
T ss_pred EECCCC-CCCCEEEEEEcchHHhhCccc---eEeccCCCc---CCCCCCeeEEEEEe
Confidence 999987 789999999999999998753 456654321 11123455555544
No 216
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.96 E-value=2.1e-09 Score=86.96 Aligned_cols=85 Identities=25% Similarity=0.456 Sum_probs=71.0
Q ss_pred EEEEEEEecCCCCCC---CCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCC
Q 008305 266 LDVKLVQAKELTNKD---LIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPML 342 (570)
Q Consensus 266 L~V~V~~A~~L~~~~---~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~ 342 (570)
|.|+|..|+++...+ +.+.+||||.++++ +..+.||++ +.||.|||+|.|.+. ....+.+.|||....
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve--d~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~-- 71 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVE--DVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGD-- 71 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEEC--CEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCC--
Confidence 578999999998877 56789999999998 344677775 589999999999995 356899999999764
Q ss_pred CCceEEEEEEEccccCC
Q 008305 343 APEIIGIAQIALKELEP 359 (570)
Q Consensus 343 ~d~~lG~~~i~l~~l~~ 359 (570)
..-.+|..-+.++++..
T Consensus 72 ~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 72 QPVPVGLLWLRLSDIAE 88 (109)
T ss_pred eecceeeehhhHHHHHH
Confidence 66789999999998853
No 217
>PLN02952 phosphoinositide phospholipase C
Probab=98.93 E-value=1.1e-08 Score=109.25 Aligned_cols=115 Identities=18% Similarity=0.313 Sum_probs=89.3
Q ss_pred ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEE
Q 008305 443 RGVLSITVIAAENLPKV------DLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDV 513 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~------~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V 513 (570)
...|.|.|+.|++++.. +....+||||+|.+.+ ...+.+|+++.++.||+|||+|.|.+..+.-+.+.|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999998532 1123469999999864 24567999999999999999999999887778899999
Q ss_pred EECCCCCC-ceeEEEEEeccccccCceEEEEEEecC---CC--CeEEEEEEEE
Q 008305 514 YDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDG---TK--SGKLFLNLKW 560 (570)
Q Consensus 514 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~---~~--~G~i~l~~~~ 560 (570)
+|++..+. +++|++.+|++.+..+- +|++|.+ .. .-.+.+.+.|
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 99988765 79999999999997654 4888853 33 2345555554
No 218
>PLN02228 Phosphoinositide phospholipase C
Probab=98.93 E-value=1.2e-08 Score=108.08 Aligned_cols=122 Identities=20% Similarity=0.334 Sum_probs=96.1
Q ss_pred ceEEEEEEEEeecCCC----C--CCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCee-eeEEEEEeecCCCcEEEEE
Q 008305 443 RGVLSITVIAAENLPK----V--DLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVW-NQTFDFVVEDGQHEMLILD 512 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~----~--~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w-~e~f~f~v~~~~~~~L~i~ 512 (570)
...|.|+|++|++|+. . +.....||||+|.+.+ ...+++|++++++.||.| ||.|+|.+..+.-+.|.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 4579999999998742 1 1123479999999854 234678999888899999 9999999988878899999
Q ss_pred EEECCCCCC-ceeEEEEEeccccccCceEEEEEEecC---C--CCeEEEEEEEEEecCCCC
Q 008305 513 VYDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDG---T--KSGKLFLNLKWTPQLVLR 567 (570)
Q Consensus 513 V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~---~--~~G~i~l~~~~~p~~~~~ 567 (570)
|+|++..+. +++|+..++++.+..+-+ .++|.+ . ...+|.+.+.+.+..++|
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~G~~l~~atLfv~~~~~~~~~~~ 567 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRAGKAYKNTRLLVSFALDPPYTFR 567 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCCCCCCCCeEEEEEEEEcCccccC
Confidence 999986654 799999999999965433 456633 2 257899999999988875
No 219
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.92 E-value=1.9e-08 Score=106.91 Aligned_cols=122 Identities=18% Similarity=0.229 Sum_probs=91.0
Q ss_pred ceEEEEEEEEecCCC----CC--CCCCCCCcEEEEEEEe--CCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEE
Q 008305 263 CGTLDVKLVQAKELT----NK--DLIGKSDPFVVIFVRP--LRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRV 334 (570)
Q Consensus 263 ~G~L~V~V~~A~~L~----~~--~~~g~~dpyv~v~l~~--~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v 334 (570)
...|.|+|+.+.++. .. +.....||||+|.+.. ....+.+|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 467999999998753 11 1123579999999973 234467899999989999999999999888777899999
Q ss_pred EeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEE
Q 008305 335 FDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLY 391 (570)
Q Consensus 335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~ 391 (570)
+|+|.. +.|+++|++.+|+..|..|-. .++|....+ ..-....|.+.+.+
T Consensus 531 ~d~D~~-~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g---~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMS-EKDDFGGQTCLPVWELSQGIR---AFPLHSRKG---EKYKSVKLLVKVEF 580 (581)
T ss_pred EECCCC-CCCcEEEEEEcchhhhhCccc---eEEccCCCc---CCCCCeeEEEEEEe
Confidence 999987 789999999999999988753 456654321 11123455555543
No 220
>PLN02228 Phosphoinositide phospholipase C
Probab=98.92 E-value=2.2e-08 Score=106.28 Aligned_cols=124 Identities=21% Similarity=0.262 Sum_probs=95.2
Q ss_pred ceEEEEEEEEecCCCC---C---CCCCCCCcEEEEEEEeC--CCceEEeeeeCCCCCCee-ecEEEEEEecCCCCeEEEE
Q 008305 263 CGTLDVKLVQAKELTN---K---DLIGKSDPFVVIFVRPL--RDRMKTSKTINNELNPIW-NEHFEFTVEDASTQHLTVR 333 (570)
Q Consensus 263 ~G~L~V~V~~A~~L~~---~---~~~g~~dpyv~v~l~~~--~~~~~~T~~~~~t~nP~W-ne~f~f~v~~~~~~~L~~~ 333 (570)
...|.|+|++|++|+. . +.....||||++.+... ....++|+++.++.||.| ||+|.|.+..++-..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3479999999998731 1 11234799999999743 334678999988899999 9999999988877789999
Q ss_pred EEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEe
Q 008305 334 VFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCP 393 (570)
Q Consensus 334 v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p 393 (570)
|+|+|.. +.|+++|++.+|+..|..|-. .++|.... ...-..++|.+.+.+.+
T Consensus 510 V~D~d~~-~~d~figq~~lPv~~Lr~GYR---~VpL~~~~---G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 510 VQDYDND-TQNDFAGQTCLPLPELKSGVR---AVRLHDRA---GKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEeCCCC-CCCCEEEEEEcchhHhhCCee---EEEccCCC---CCCCCCeEEEEEEEEcC
Confidence 9999987 789999999999999987643 45665432 12223567888888764
No 221
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.92 E-value=1.1e-08 Score=105.92 Aligned_cols=183 Identities=22% Similarity=0.347 Sum_probs=132.0
Q ss_pred eEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCC---CCCCceEEEEEEEccccCCCeeeEEEEEeecccccc
Q 008305 300 MKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGP---MLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQ 376 (570)
Q Consensus 300 ~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~---~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~ 376 (570)
..+|.++.+.+||.|.+.|.+.......|.+++.++|.+.. ....+|+|++...++.+........-+.+.+
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~----- 116 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP----- 116 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc-----
Confidence 35899999999999999998887777789999999997754 2567899999999998875432221111110
Q ss_pred CCCcceeEEEEEEEEEeccCCCCCCCCCCCCccchhhhhhhcccCchhhhhhccccccccCCCcccceEEEEEEEEeecC
Q 008305 377 RDTKNRGQVHLELLYCPFGTESSLKNPFNSDYSLTTLEKSLKSETSRAEAAELGKIATQKKSDVIVRGVLSITVIAAENL 456 (570)
Q Consensus 377 ~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L 456 (570)
......|+|.+...-. ..........++|++|
T Consensus 117 ~~~~~~g~iti~aee~------------------------------------------------~~~~~~~~~~~~~~~l 148 (529)
T KOG1327|consen 117 GKNAGSGTITISAEED------------------------------------------------ESDNDVVQFSFRAKNL 148 (529)
T ss_pred CccCCcccEEEEeecc------------------------------------------------cccCceeeeeeeeeec
Confidence 1223456666654321 0012233345669999
Q ss_pred CCCCCCCCCCcEEEEEEe--CC--CceEeCcccCCCCCCeeeeEEEEEee----cCCCcEEEEEEEECCCCCC-ceeEEE
Q 008305 457 PKVDLIGKADPFVVLQLK--KA--GNRAKTRVAHDTLNPVWNQTFDFVVE----DGQHEMLILDVYDHDTFGK-DKMGKC 527 (570)
Q Consensus 457 ~~~~~~g~~dpyv~v~~~--~~--~~~~kT~v~~~t~nP~w~e~f~f~v~----~~~~~~L~i~V~d~~~~~~-d~lG~~ 527 (570)
.+++..+++|||..++-. .+ ...++|.+++++++|.|.+ |.+... ...+..+.+.+||++..++ +++|++
T Consensus 149 d~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~ 227 (529)
T KOG1327|consen 149 DPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKF 227 (529)
T ss_pred CcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEe
Confidence 999999999999998753 21 2368999999999999985 444432 2245679999999999888 799999
Q ss_pred EEecccccc
Q 008305 528 IMTLTRVMM 536 (570)
Q Consensus 528 ~i~l~~l~~ 536 (570)
..++.++..
T Consensus 228 ~tt~~~~~~ 236 (529)
T KOG1327|consen 228 QTTLSELQE 236 (529)
T ss_pred cccHHHhcc
Confidence 999988853
No 222
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.89 E-value=1.4e-08 Score=108.09 Aligned_cols=115 Identities=22% Similarity=0.339 Sum_probs=89.7
Q ss_pred ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEE
Q 008305 443 RGVLSITVIAAENLPKV------DLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDV 513 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~------~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V 513 (570)
...|.|+|+.+.+++.. +....+||||+|.+.+ ...+.+|++..++.||.|||.|+|.+..+.-+.|.|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46799999999987532 2223479999999964 23457888888899999999999999888888999999
Q ss_pred EECCCCCC-ceeEEEEEeccccccCceEEEEEEecCCC-----CeEEEEEEEE
Q 008305 514 YDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTK-----SGKLFLNLKW 560 (570)
Q Consensus 514 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~~~~ 560 (570)
+|++..++ +++|+..+|+..|..+-+ .++|.+.. .-+|.++|.|
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc---eEeccCCCcCCCCCCeeEEEEEe
Confidence 99988654 799999999999875543 45664332 3467777766
No 223
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.87 E-value=8.9e-09 Score=83.37 Aligned_cols=85 Identities=22% Similarity=0.406 Sum_probs=70.5
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCc
Q 008305 446 LSITVIAAENLPKVD---LIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKD 522 (570)
Q Consensus 446 L~V~v~~a~~L~~~~---~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d 522 (570)
|.|+|+.|+|+.... ..+.+||||.+.+++ ..+.||++ +.||.|||.|.|.+. ....+.+.|||+.....-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved-~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~~~~ 74 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVED-VERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGDQPV 74 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECC-EEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCCeec
Confidence 578999999998877 578899999999964 45788875 699999999999994 467899999998653224
Q ss_pred eeEEEEEecccccc
Q 008305 523 KMGKCIMTLTRVMM 536 (570)
Q Consensus 523 ~lG~~~i~l~~l~~ 536 (570)
.+|...+.++++..
T Consensus 75 Pi~llW~~~sdi~E 88 (109)
T cd08689 75 PVGLLWLRLSDIAE 88 (109)
T ss_pred ceeeehhhHHHHHH
Confidence 79999999999873
No 224
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.87 E-value=1.5e-08 Score=107.72 Aligned_cols=121 Identities=21% Similarity=0.325 Sum_probs=92.7
Q ss_pred EEEEEEEEecCCCCCC----CCCCCCcEEEEEEEeCC--CceEEee-eeCCCCCCeeecEEEEEEecCCCCeEEEEEEeC
Q 008305 265 TLDVKLVQAKELTNKD----LIGKSDPFVVIFVRPLR--DRMKTSK-TINNELNPIWNEHFEFTVEDASTQHLTVRVFDD 337 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~----~~g~~dpyv~v~l~~~~--~~~~~T~-~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~ 337 (570)
+|.|+|+.++++.... ....+||||.|++...+ ....+|+ +..|+-||.|+|+|+|.+..++--.|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999766532 12457999999987332 2357888 668889999999999999999888899999999
Q ss_pred CCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305 338 EGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC 392 (570)
Q Consensus 338 d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 392 (570)
|.. ++|+|+|+..+|+..|..|-.+ ++|.... +..-...+|.+.+.+.
T Consensus 697 d~~-~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~---G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYI-GKDDFIGQTTLPVSELRQGYRH---VPLLSRE---GEALSSASLFVRIAIV 744 (746)
T ss_pred CCC-CcccccceeeccHHHhhCceee---eeecCCC---CccccceeEEEEEEEe
Confidence 998 8899999999999999987533 5564331 1223445666666653
No 225
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.84 E-value=3.3e-08 Score=105.14 Aligned_cols=115 Identities=21% Similarity=0.314 Sum_probs=89.1
Q ss_pred ceEEEEEEEEeecCCC----C--CCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEE
Q 008305 443 RGVLSITVIAAENLPK----V--DLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDV 513 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~----~--~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V 513 (570)
...|.|+|+.+++++. . +.....||||+|.+.+ ...+.+|+++.++.||.|||.|+|.+..+.-+.|.|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 4679999999998531 1 1224579999999953 34567999999999999999999999888788999999
Q ss_pred EECCCCCC-ceeEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEEEE
Q 008305 514 YDHDTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNLKW 560 (570)
Q Consensus 514 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~ 560 (570)
+|++..+. +++|+..+|++.+..+-+ .++|.+. ..-.+.+.+.|
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccc---eEEccCCCcCCCCCeeEEEEEEe
Confidence 99987654 799999999999875543 4566433 23467777766
No 226
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.79 E-value=3e-08 Score=105.58 Aligned_cols=115 Identities=21% Similarity=0.354 Sum_probs=90.5
Q ss_pred EEEEEEEEeecCCCCCC----CCCCCcEEEEEEeC---CCceEeCc-ccCCCCCCeeeeEEEEEeecCCCcEEEEEEEEC
Q 008305 445 VLSITVIAAENLPKVDL----IGKADPFVVLQLKK---AGNRAKTR-VAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDH 516 (570)
Q Consensus 445 ~L~V~v~~a~~L~~~~~----~g~~dpyv~v~~~~---~~~~~kT~-v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~ 516 (570)
.|.|.|+++++++.... ....||||.|.+.+ .....+|+ +..++-||.|+|+|+|.+..+.-+-|.|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 89999999997765432 24479999999854 33567899 455679999999999999999899999999999
Q ss_pred CCCCC-ceeEEEEEeccccccCceEEEEEEecCC-----CCeEEEEEEEEEe
Q 008305 517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT-----KSGKLFLNLKWTP 562 (570)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~~p 562 (570)
+..++ ||+|+.++|++++..+-+ -++|.+. ..-.|.+.++|.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyR---hVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYR---HVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred CCCCcccccceeeccHHHhhCcee---eeeecCCCCccccceeEEEEEEEec
Confidence 99985 799999999999865543 3455432 3567788887754
No 227
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.79 E-value=2.1e-08 Score=102.17 Aligned_cols=122 Identities=29% Similarity=0.481 Sum_probs=100.7
Q ss_pred eEEEEEEEEecCCCCCCCC-CCCCcEEEEEEEeCCCceEEeeeeCCCCCCeee-cEEEEEEecC--CCCeEEEEEEeCCC
Q 008305 264 GTLDVKLVQAKELTNKDLI-GKSDPFVVIFVRPLRDRMKTSKTINNELNPIWN-EHFEFTVEDA--STQHLTVRVFDDEG 339 (570)
Q Consensus 264 G~L~V~V~~A~~L~~~~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wn-e~f~f~v~~~--~~~~L~~~v~d~d~ 339 (570)
|.|.|+|..|++|+.+|.. ...|.||+++++ ...++|.+..+++||.|| +.|.|.|.+. ....|.+++.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~---n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFA---NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEec---ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 6889999999999998854 467999999998 678999999999999999 7889998764 34569999999999
Q ss_pred CCCCCceEEEEEEEccccCC----------CeeeEEEEEeeccccccCCCcceeEEEEEEEEEec
Q 008305 340 PMLAPEIIGIAQIALKELEP----------GKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPF 394 (570)
Q Consensus 340 ~~~~d~~lG~~~i~l~~l~~----------~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~ 394 (570)
. +.+|-||.+.|++..|.- +.....|+++.... ...+|+|.+-+...-+
T Consensus 80 y-sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-----hgirgeinvivkvdlf 138 (1169)
T KOG1031|consen 80 Y-SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-----HGIRGEINVIVKVDLF 138 (1169)
T ss_pred c-ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-----ccccceeEEEEEEeeh
Confidence 9 999999999999998742 34567899997553 3468888877665444
No 228
>PLN02352 phospholipase D epsilon
Probab=98.76 E-value=5.6e-08 Score=105.51 Aligned_cols=122 Identities=16% Similarity=0.305 Sum_probs=93.9
Q ss_pred CceEEEEEEEEecCCCCC----CCC-CCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEe
Q 008305 262 PCGTLDVKLVQAKELTNK----DLI-GKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFD 336 (570)
Q Consensus 262 ~~G~L~V~V~~A~~L~~~----~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d 336 (570)
-.|.|.++|.+|+-+... +.. ...||||.+.++ +.+..|| .+..||+|||+|.+.+.......+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG--NKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeC--CcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence 479999999999843321 111 123999999998 4566777 566699999999999987764589999988
Q ss_pred CCCCCCCCceEEEEEEEccccCCCee-eEEEEEeeccccccCCCcceeEEEEEEEEEeccCC
Q 008305 337 DEGPMLAPEIIGIAQIALKELEPGKV-KDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTE 397 (570)
Q Consensus 337 ~d~~~~~d~~lG~~~i~l~~l~~~~~-~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 397 (570)
. ..+||.+.+|+.++..+.. .+.|+++....+ +... ..+|+++++|.|....
T Consensus 83 ~------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~--~p~~-~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 K------CSILGRFHIQAHQIVTEASFINGFFPLIMENG--KPNP-ELKLRFMLWFRPAELE 135 (758)
T ss_pred C------CeEEEEEEEEHHHhhCCCcccceEEEcccCCC--CCCC-CCEEEEEEEEEEhhhC
Confidence 2 4689999999999998865 899999976532 1222 2699999999998665
No 229
>PLN02352 phospholipase D epsilon
Probab=98.75 E-value=7.4e-08 Score=104.57 Aligned_cols=119 Identities=18% Similarity=0.295 Sum_probs=93.1
Q ss_pred ccceEEEEEEEEeecCCCC----CC-CCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEE
Q 008305 441 IVRGVLSITVIAAENLPKV----DL-IGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYD 515 (570)
Q Consensus 441 ~~~g~L~V~v~~a~~L~~~----~~-~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d 515 (570)
.--|.|.++|++|+-+... +. ....+|||.|.+++ ....|| .+..||.|+|+|.+.|.......+.|.|+|
T Consensus 7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN-KKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCC-cEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence 3468999999999843221 11 11239999999974 567788 456699999999999987765689999999
Q ss_pred CCCCCCceeEEEEEeccccccCce-EEEEEEecCCC----C-eEEEEEEEEEecCCCC
Q 008305 516 HDTFGKDKMGKCIMTLTRVMMEGE-IQDSFHIDGTK----S-GKLFLNLKWTPQLVLR 567 (570)
Q Consensus 516 ~~~~~~d~lG~~~i~l~~l~~~~~-~~~w~~L~~~~----~-G~i~l~~~~~p~~~~~ 567 (570)
+..+||.+.|+..++..++. .++||++.+.. . .+|+++++|.|+...+
T Consensus 83 ----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 136 (758)
T PLN02352 83 ----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELEP 136 (758)
T ss_pred ----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhCc
Confidence 35799999999999998866 89999985431 3 4999999999987654
No 230
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.73 E-value=5.4e-09 Score=109.09 Aligned_cols=98 Identities=32% Similarity=0.464 Sum_probs=84.7
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC----ceEEeeeeCCCCCCeeecEEEEEEecC----CCCeEEE
Q 008305 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD----RMKTSKTINNELNPIWNEHFEFTVEDA----STQHLTV 332 (570)
Q Consensus 261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~----~~~~T~~~~~t~nP~Wne~f~f~v~~~----~~~~L~~ 332 (570)
...-.|.|.|+.|+++.+-|.+|.+||||++.+.|... ..++|+++..|+||+|+|+|+|.|... +.-.+.|
T Consensus 944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence 45668999999999999999999999999999985321 257999999999999999999998532 2346899
Q ss_pred EEEeCCCCCCCCceEEEEEEEccccCC
Q 008305 333 RVFDDEGPMLAPEIIGIAQIALKELEP 359 (570)
Q Consensus 333 ~v~d~d~~~~~d~~lG~~~i~l~~l~~ 359 (570)
+|+|+|-. +.+||-|++.+.|+++..
T Consensus 1024 TVMDHD~L-~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1024 TVMDHDYL-RSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred Eeecccee-cccccchHHHHhhCCCCC
Confidence 99999999 999999999999998864
No 231
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.70 E-value=1.7e-08 Score=110.38 Aligned_cols=107 Identities=23% Similarity=0.284 Sum_probs=90.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceEeCcccCCCCCCeeeeEEEEE---eecCCCcEEEEEEEEC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRAKTRVAHDTLNPVWNQTFDFV---VEDGQHEMLILDVYDH 516 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~w~e~f~f~---v~~~~~~~L~i~V~d~ 516 (570)
.|.|+|.|+.|++|+.......+||||+.++.. +..+.||+++++|+||.|||...+. ........|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 589999999999997666567899999999953 3457899999999999999987765 2333567899999998
Q ss_pred CCCCC-ceeEEEEEeccccccCceEEEEEEecCC
Q 008305 517 DTFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGT 549 (570)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~ 549 (570)
+.... .++|.+.|+|.++...++...||.|...
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 88765 5999999999999888888899999764
No 232
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.65 E-value=8.4e-08 Score=101.45 Aligned_cols=117 Identities=26% Similarity=0.442 Sum_probs=90.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC---CCceE-eCcccCCCCCCeee-eEEEEEeecCCCcEEEEEEEECC
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKK---AGNRA-KTRVAHDTLNPVWN-QTFDFVVEDGQHEMLILDVYDHD 517 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~~-kT~v~~~t~nP~w~-e~f~f~v~~~~~~~L~i~V~d~~ 517 (570)
.-.|.|.|+.|++|+... .|...|||+|.+-+ ...++ +|.++.+++||+|| |.|+|.+.+|.-+.|.|.|+|.|
T Consensus 1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 357899999999999654 35667999999843 22344 44556678999999 99999999999999999999999
Q ss_pred CCCC-ceeEEEEEeccccccCceEEEEEEecCCCCeE-----EEEEEEEEec
Q 008305 518 TFGK-DKMGKCIMTLTRVMMEGEIQDSFHIDGTKSGK-----LFLNLKWTPQ 563 (570)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~-----i~l~~~~~p~ 563 (570)
.+++ .|||++..|+..+..+ -+.++|++.-+.+ +.+.++..|+
T Consensus 1143 mfs~~~FiaqA~yPv~~ik~G---fRsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSG---FRSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred ccCCcceeeeeecchhhhhcc---ceeeecccCchhhhhhhhheeeeEeccc
Confidence 9988 6999999999998643 3456787764433 3445555444
No 233
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.65 E-value=1.3e-07 Score=100.02 Aligned_cols=125 Identities=23% Similarity=0.338 Sum_probs=93.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEe---CCCceEEeeeeCCCCCCeee-cEEEEEEecCCCCeEEEEEEeCCC
Q 008305 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRP---LRDRMKTSKTINNELNPIWN-EHFEFTVEDASTQHLTVRVFDDEG 339 (570)
Q Consensus 264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~---~~~~~~~T~~~~~t~nP~Wn-e~f~f~v~~~~~~~L~~~v~d~d~ 339 (570)
-.|.|.|+.|++|+... .|..-|||++.+-. ..++.++|.+..|++||+|| |.|+|.+.+|+--.|+|.|+|.|-
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 36789999999998543 35567999999863 22345667778999999999 999999999988889999999999
Q ss_pred CCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEEeccC
Q 008305 340 PMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGT 396 (570)
Q Consensus 340 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~ 396 (570)
+ +...|||++..|+..+..|- ..++|.+.. .+.-.-..|.+.+...|...
T Consensus 1144 f-s~~~FiaqA~yPv~~ik~Gf---RsVpLkN~y---SEdlELaSLLv~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1144 F-SDPNFLAQATYPVKAIKSGF---RSVPLKNGY---SEDLELASLLVFIEMRPVLE 1193 (1267)
T ss_pred c-CCcceeeeeecchhhhhccc---eeeecccCc---hhhhhhhhheeeeEeccccC
Confidence 9 77789999999999998763 224553221 11123455667777766543
No 234
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.64 E-value=1.1e-07 Score=96.96 Aligned_cols=115 Identities=34% Similarity=0.516 Sum_probs=94.3
Q ss_pred ceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCCCceEeCcccCCCCCCeeee-EEEEEeec--CCCcEEEEEEEECCC
Q 008305 443 RGVLSITVIAAENLPKVDLI-GKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQ-TFDFVVED--GQHEMLILDVYDHDT 518 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e-~f~f~v~~--~~~~~L~i~V~d~~~ 518 (570)
.|.|-|.|..|++||.+|.. ...|.||++.+. +..+||.+..+++||.||. =|.|.+.+ ..++.|.|.+.|++.
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~--n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFA--NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEec--ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 37889999999999998863 457999999994 5789999999999999995 48888864 467889999999999
Q ss_pred CCC-ceeEEEEEeccccccCc----------eEEEEEEecCC---CCeEEEEEEE
Q 008305 519 FGK-DKMGKCIMTLTRVMMEG----------EIQDSFHIDGT---KSGKLFLNLK 559 (570)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~----------~~~~w~~L~~~---~~G~i~l~~~ 559 (570)
.+. |.||.+.|+++.+..+. -+..||++-+. -+|+|.+-++
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 876 89999999999876322 34789998654 4788887554
No 235
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.40 E-value=2.1e-07 Score=102.23 Aligned_cols=108 Identities=25% Similarity=0.363 Sum_probs=90.3
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEE---EecCCCCeEEEEEEe
Q 008305 262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFT---VEDASTQHLTVRVFD 336 (570)
Q Consensus 262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~---v~~~~~~~L~~~v~d 336 (570)
..|+|.|-|..|++|.--.-...+||||+.++.|..++ +.||+++++|.||.|||...+. ........|.+.||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 36889999999999965544567999999999976654 5789999999999999988766 223345689999999
Q ss_pred CCCCCCCCceEEEEEEEccccCCCeeeEEEEEee
Q 008305 337 DEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLV 370 (570)
Q Consensus 337 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 370 (570)
.+.. ..+.++|.+.++|.++...+....||.|.
T Consensus 1602 ~~~~-~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGGL-LENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccce-eeeeeeeeeecchhhcchhhhhcceeecc
Confidence 9998 89999999999999998777677999984
No 236
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.21 E-value=1.9e-06 Score=72.10 Aligned_cols=101 Identities=19% Similarity=0.349 Sum_probs=76.2
Q ss_pred EEEEEEEeecCCCCC-------------CCCCCCcEEEEEEe--CCCceEeCcccCCCCCCeeeeEEEEEee--------
Q 008305 446 LSITVIAAENLPKVD-------------LIGKADPFVVLQLK--KAGNRAKTRVAHDTLNPVWNQTFDFVVE-------- 502 (570)
Q Consensus 446 L~V~v~~a~~L~~~~-------------~~g~~dpyv~v~~~--~~~~~~kT~v~~~t~nP~w~e~f~f~v~-------- 502 (570)
|.|.|++|.+|...- ..-..|+||++.+. .+....+|+++.++--|.|+..++|+|.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467888888886421 01125899999863 3556789999999999999999999985
Q ss_pred c-------CCCcEEEEEEEECCCC----------CCc-eeEEEEEeccccccCc-eEEEEEEe
Q 008305 503 D-------GQHEMLILDVYDHDTF----------GKD-KMGKCIMTLTRVMMEG-EIQDSFHI 546 (570)
Q Consensus 503 ~-------~~~~~L~i~V~d~~~~----------~~d-~lG~~~i~l~~l~~~~-~~~~w~~L 546 (570)
. .....+.++||+.... .+| .||.+.||+.+++.+. .+..||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 1345799999987532 135 7999999999999665 57899975
No 237
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=98.09 E-value=1.7e-05 Score=82.90 Aligned_cols=229 Identities=17% Similarity=0.279 Sum_probs=156.7
Q ss_pred CCCCceecCC-------ccchHHHHHHHHhHhHhH--HHHH----HHHHHHhHHHHHhhcCC-CCcceEEEeEEecCCCC
Q 008305 58 FYPPWVVFQQ-------RQKLNWLNYQLDKLWPFI--NEAA----SELIRSNVEPILEQYRP-SILASLSFSKLTLGTVA 123 (570)
Q Consensus 58 ~~p~w~~~~~-------~E~~eWlN~~l~~~Wp~~--~~~~----~~~~~~~~~~~l~~~~p-~~l~~i~~~~~~lG~~p 123 (570)
..|.|..... ...|-.+|.+++.++... ...+ -+.+...+.+.+....- ..+..+.+.++-+|...
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f 160 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF 160 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence 4677775432 124566777777776532 2233 33344444455554433 47999999999999999
Q ss_pred CeEeEEEEEeccC------------------C-----CceeEEEEEEEEcCCCcEEEEEeeeeeeeeeEEEEEEEEEEEE
Q 008305 124 PQFTGVAIVESES------------------G-----EEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVF 180 (570)
Q Consensus 124 P~i~~i~~~~~~~------------------~-----~~~~~~d~~~~~~~~~~i~l~~~~~~g~~~~v~v~~~~~~g~l 180 (570)
|.+++.+++.-+. + ...+.+=+++.|.|+..-++++....+....++|+..+++|.+
T Consensus 161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~ 240 (1051)
T KOG3532|consen 161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV 240 (1051)
T ss_pred ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence 9999999986220 0 1223445789999998777777766677777889999999999
Q ss_pred EEEeeeCCCCCCcccEEEEEeccCcceeEEEEE--eccccccCcchHHHHHHHHHHHHHhhcccccee--eEecCC---C
Q 008305 181 RLIFKPLVDEFPCFGAVAYSLREKKDLDFTLKV--VGGDISSIPGISDAIEETIIDAIEDSITWPVRQ--IIPILP---G 253 (570)
Q Consensus 181 rv~l~pl~~~~P~~~~~~~~f~~~P~id~~l~~--~g~~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~--~~~~~~---~ 253 (570)
|+.+. ..+.-|+ +++|+..|.+....+. +|-.+- --+.+.|.+.++.++.+..+||++- ..|... +
T Consensus 241 r~~~~--r~py~hw---~~sf~G~P~~e~di~s~~qg~qLQ--~~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~ 313 (1051)
T KOG3532|consen 241 RVILS--RQPYHHW---TFSFVGQPIFETDINSQIQGHQLQ--RLIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF 313 (1051)
T ss_pred eEEEE--eccceee---eeeeccCchhhhhhHHHHHHHHHH--HHhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence 99985 6677777 9999999976655543 331111 1244577888888889999999964 233322 1
Q ss_pred -----CCCCcccCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEe
Q 008305 254 -----DYSDLELKPCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRP 295 (570)
Q Consensus 254 -----~~~~~~~~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~ 295 (570)
..+.....+.|.+.|++.++..|... .++..-||.+++.+
T Consensus 314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 314 QASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES 358 (1051)
T ss_pred ccCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence 11222335889999999999988654 47788899998874
No 238
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=8.2e-06 Score=78.87 Aligned_cols=90 Identities=22% Similarity=0.324 Sum_probs=75.2
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEEEeC
Q 008305 262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRVFDD 337 (570)
Q Consensus 262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v~d~ 337 (570)
...-|.|++++|..|...|.+|.+||||..++.+..+. +++|.+.+++.||++|+.|.|.+.. .....+.+.|||+
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence 45678899999999999999999999999999865444 5788889999999999999998853 3456799999999
Q ss_pred CCCCCCCceEEEEEE
Q 008305 338 EGPMLAPEIIGIAQI 352 (570)
Q Consensus 338 d~~~~~d~~lG~~~i 352 (570)
+.. ...+++|-+..
T Consensus 311 ~~G-~s~d~~GG~~~ 324 (362)
T KOG1013|consen 311 DIG-KSNDSIGGSML 324 (362)
T ss_pred CCC-cCccCCCcccc
Confidence 987 77888886443
No 239
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.97 E-value=0.0012 Score=66.47 Aligned_cols=258 Identities=15% Similarity=0.185 Sum_probs=149.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEec-------CCCCeEEEEEEeCC
Q 008305 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED-------ASTQHLTVRVFDDE 338 (570)
Q Consensus 266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~-------~~~~~L~~~v~d~d 338 (570)
+.|+|++|++.+... ...-.+..+++ +....|..+..+..|.||......+.. .....+++++|-.+
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~n---g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFN---GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeC---CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 678999999998762 23456677776 777888889999999999988887742 23456999999988
Q ss_pred CCCCCCceEEEEEEEcccc---CCC--eeeEEEEEeeccccccCCCcceeEEEEEEEEEeccCCCCCC--------CCCC
Q 008305 339 GPMLAPEIIGIAQIALKEL---EPG--KVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGTESSLK--------NPFN 405 (570)
Q Consensus 339 ~~~~~d~~lG~~~i~l~~l---~~~--~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~--------~~~~ 405 (570)
...+..+.+|.+.++|... ..+ .....|++|..... +-.+.+-+|.+.+............ .|..
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~--~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~ 153 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS--KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPR 153 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc--ccccCCccEEEEEEEeccccccCCccccccccCCCcc
Confidence 3326889999999999998 544 45778999976421 1223455677777665332211000 0000
Q ss_pred CCccchhhhhhhcccCch-hhhhhccccccccCCCcccceEEEEEEEEeecCCCCC----C--CCCCCcEEEEEEeCCCc
Q 008305 406 SDYSLTTLEKSLKSETSR-AEAAELGKIATQKKSDVIVRGVLSITVIAAENLPKVD----L--IGKADPFVVLQLKKAGN 478 (570)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~----~--~g~~dpyv~v~~~~~~~ 478 (570)
... ..+.........-. ....+.+-..-.........-.|.|++..|+||...- . .+...-|...++-+ .
T Consensus 154 ~~~-~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllG--n 230 (340)
T PF12416_consen 154 QGH-VPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLG--N 230 (340)
T ss_pred cCC-CcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecC--c
Confidence 000 00000000000000 0000000000000111234568999999999997541 1 12234455555543 2
Q ss_pred eEeCcccCCCCCCeee--eEEEEEeecC---------CCcEEEEEEEECCCCCCceeEEEEEeccccccCc
Q 008305 479 RAKTRVAHDTLNPVWN--QTFDFVVEDG---------QHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEG 538 (570)
Q Consensus 479 ~~kT~v~~~t~nP~w~--e~f~f~v~~~---------~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~ 538 (570)
...|...+...+|.|. +.-.+.++.. ....|.|.++.. +..||.+.+++..++...
T Consensus 231 ~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g----~~~Lg~~~v~l~~Ll~~~ 297 (340)
T PF12416_consen 231 DVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG----NQSLGSTSVPLQPLLPKD 297 (340)
T ss_pred EeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC----CcEEEEEEEEhhhccCCC
Confidence 3345566677788774 2222554311 234677777763 358999999999997553
No 240
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.90 E-value=1.2e-05 Score=62.39 Aligned_cols=97 Identities=18% Similarity=0.231 Sum_probs=69.7
Q ss_pred EEEEEEeecCCCCCCC-CCCCcEEEEEEe-CCCceEeCcccCCCCCCeeeeEEEEEee--cCCCcEEEEEEEECCCCCCc
Q 008305 447 SITVIAAENLPKVDLI-GKADPFVVLQLK-KAGNRAKTRVAHDTLNPVWNQTFDFVVE--DGQHEMLILDVYDHDTFGKD 522 (570)
Q Consensus 447 ~V~v~~a~~L~~~~~~-g~~dpyv~v~~~-~~~~~~kT~v~~~t~nP~w~e~f~f~v~--~~~~~~L~i~V~d~~~~~~d 522 (570)
-+++.+|+||.-...- ..+.-|++-.+. .+...+||.....+.||+|.|+|.|.+. +..+-.|.|.|+. .+-++.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe 80 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKR 80 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccc
Confidence 4788999999754432 234456664442 2345789999999999999999999885 3456679999998 444457
Q ss_pred eeEEEEEeccccccCceEEEEEE
Q 008305 523 KMGKCIMTLTRVMMEGEIQDSFH 545 (570)
Q Consensus 523 ~lG~~~i~l~~l~~~~~~~~w~~ 545 (570)
.||.|.+.++++- ..+..+|.+
T Consensus 81 ~iG~~sL~l~s~g-eeE~~HW~e 102 (103)
T cd08684 81 TIGECSLSLRTLS-TQETDHWLE 102 (103)
T ss_pred eeeEEEeecccCC-HHHhhhhhc
Confidence 9999999999873 334456653
No 241
>PLN02964 phosphatidylserine decarboxylase
Probab=97.89 E-value=2e-05 Score=85.46 Aligned_cols=88 Identities=16% Similarity=0.304 Sum_probs=75.1
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEE-EEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCC
Q 008305 261 KPCGTLDVKLVQAKELTNKDLIGKSDPFVV-IFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEG 339 (570)
Q Consensus 261 ~~~G~L~V~V~~A~~L~~~~~~g~~dpyv~-v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~ 339 (570)
.-.|+..+++++|+ ++ ..|+|.. ++++ .++++|.+.++|+||+||+...|.+........++.|||.+.
T Consensus 51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g---~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK---FKDKWLACVSFG---EQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred cccCeEEEEeehhh----hc---cCCcEEEEEEec---ceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 46799999999997 33 3688764 5555 889999999999999999999999987777778999999999
Q ss_pred CCCCCceEEEEEEEccccCC
Q 008305 340 PMLAPEIIGIAQIALKELEP 359 (570)
Q Consensus 340 ~~~~d~~lG~~~i~l~~l~~ 359 (570)
+ +.++++|.|++++.++..
T Consensus 121 ~-s~n~lv~~~e~~~t~f~~ 139 (644)
T PLN02964 121 L-SKNTLVGYCELDLFDFVT 139 (644)
T ss_pred C-CHHHhhhheeecHhhccH
Confidence 9 999999999998877653
No 242
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.83 E-value=1.6e-05 Score=61.74 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=69.1
Q ss_pred EEEEEEecCCCCCCCCC-CCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEEEeCCCCCCC
Q 008305 267 DVKLVQAKELTNKDLIG-KSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRVFDDEGPMLA 343 (570)
Q Consensus 267 ~V~V~~A~~L~~~~~~g-~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v~d~d~~~~~ 343 (570)
.++|+.|++|.-...-| .+.-|++--+.-.+....+|++..+..||+|+|+|.|.+.. ...-.|.|.|+. .. .+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~-~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QT-PR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cC-Cc
Confidence 58999999997654333 34456654333223446789999999999999999998753 344568888888 33 57
Q ss_pred CceEEEEEEEccccCCCeeeEEEE
Q 008305 344 PEIIGIAQIALKELEPGKVKDVWL 367 (570)
Q Consensus 344 d~~lG~~~i~l~~l~~~~~~~~w~ 367 (570)
...||.|.+.++++-... .+.|.
T Consensus 79 Ke~iG~~sL~l~s~geeE-~~HW~ 101 (103)
T cd08684 79 KRTIGECSLSLRTLSTQE-TDHWL 101 (103)
T ss_pred cceeeEEEeecccCCHHH-hhhhh
Confidence 889999999999886433 34454
No 243
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=5.6e-05 Score=74.48 Aligned_cols=108 Identities=21% Similarity=0.320 Sum_probs=84.1
Q ss_pred ccceEEEEEEEEeecCCCCCC-CCCCCcEEEEEEeCCC---ceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEE-
Q 008305 441 IVRGVLSITVIAAENLPKVDL-IGKADPFVVLQLKKAG---NRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYD- 515 (570)
Q Consensus 441 ~~~g~L~V~v~~a~~L~~~~~-~g~~dpyv~v~~~~~~---~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d- 515 (570)
...|.+.|.|++|++|..+.. ...++|||+|++-.+. .+.+|+...+|++|.+.+...|.-. +....|.+.||-
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence 457899999999999976543 2368999999985322 3568888899999999888877654 567789999995
Q ss_pred CCCCCC-ceeEEEEEeccccccCc-eEEEEEEecCC
Q 008305 516 HDTFGK-DKMGKCIMTLTRVMMEG-EIQDSFHIDGT 549 (570)
Q Consensus 516 ~~~~~~-d~lG~~~i~l~~l~~~~-~~~~w~~L~~~ 549 (570)
+.+... .|+|.+++-+.++.... ....||+|-+.
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 444433 59999999999998666 56899999654
No 244
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.66 E-value=7.2e-05 Score=62.78 Aligned_cols=104 Identities=19% Similarity=0.390 Sum_probs=75.0
Q ss_pred EEEEEEEecCCCCCC---------C----CCCCCcEEEEEEEeC-CCceEEeeeeCCCCCCeeecEEEEEEe--------
Q 008305 266 LDVKLVQAKELTNKD---------L----IGKSDPFVVIFVRPL-RDRMKTSKTINNELNPIWNEHFEFTVE-------- 323 (570)
Q Consensus 266 L~V~V~~A~~L~~~~---------~----~g~~dpyv~v~l~~~-~~~~~~T~~~~~t~nP~Wne~f~f~v~-------- 323 (570)
|.|.|++|.+|+... . .-.-++||++.+.-. +++..+|+++.++-.|+|+.+++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 457788888886421 1 012589999997642 345678999999999999999999874
Q ss_pred c-------CCCCeEEEEEEeCCCC---------CCCCceEEEEEEEccccCCC-eeeEEEEEe
Q 008305 324 D-------ASTQHLTVRVFDDEGP---------MLAPEIIGIAQIALKELEPG-KVKDVWLKL 369 (570)
Q Consensus 324 ~-------~~~~~L~~~v~d~d~~---------~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L 369 (570)
+ .+...+.++||+.... ..+|-+||.+.||+.+|... .....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 1345789999987543 13567899999999999754 335677763
No 245
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.60 E-value=6.5e-05 Score=74.63 Aligned_cols=125 Identities=15% Similarity=0.158 Sum_probs=95.1
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEe--CCCceEEeeeeCCCCCCeeecEEEEEEecC-----------CCCe
Q 008305 263 CGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRP--LRDRMKTSKTINNELNPIWNEHFEFTVEDA-----------STQH 329 (570)
Q Consensus 263 ~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~--~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~-----------~~~~ 329 (570)
.-.|.+.|+++.+++........|-|+.+.+.- +..++.+|.++++|.+|.|+|.|.+.+... ....
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 345677788888876554223357788877642 234577899999999999999999988641 1234
Q ss_pred EEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305 330 LTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC 392 (570)
Q Consensus 330 L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 392 (570)
+.|++|+...+..+|.++|.|.+.+.-|.........++|.+ ......|.|.+++...
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D-----GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD-----GRKAVGGKLEVKVRIR 503 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc-----cccccCCeeEEEEEEe
Confidence 899999999887899999999999999987766666777753 2456789999998875
No 246
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.57 E-value=7.1e-05 Score=74.38 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=95.0
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEe---CCCceEeCcccCCCCCCeeeeEEEEEeecCC-----------Cc
Q 008305 442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLK---KAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ-----------HE 507 (570)
Q Consensus 442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~-----------~~ 507 (570)
....|.+.|.++.+++........|.|+++.+. +...+.+|.+++.|.+|.|+|.|...+.... ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 345678888899988876543446789998863 3446778999999999999999999986421 12
Q ss_pred EEEEEEEECCCCC--CceeEEEEEeccccccCceEEEEEEecCC---CCeEEEEEEEEEe
Q 008305 508 MLILDVYDHDTFG--KDKMGKCIMTLTRVMMEGEIQDSFHIDGT---KSGKLFLNLKWTP 562 (570)
Q Consensus 508 ~L~i~V~d~~~~~--~d~lG~~~i~l~~l~~~~~~~~w~~L~~~---~~G~i~l~~~~~p 562 (570)
-+.|+|+.+..+- +.++|.+.+.|..|....++...++|.+. -.|++.++++.+.
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIRQ 504 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEec
Confidence 4899999998773 35999999999999888888888998543 3799999998864
No 247
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=9.6e-05 Score=72.88 Aligned_cols=112 Identities=22% Similarity=0.343 Sum_probs=87.0
Q ss_pred cCCceEEEEEEEEecCCCCCCCC-CCCCcEEEEEEEeCCCc--eEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEe
Q 008305 260 LKPCGTLDVKLVQAKELTNKDLI-GKSDPFVVIFVRPLRDR--MKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFD 336 (570)
Q Consensus 260 ~~~~G~L~V~V~~A~~L~~~~~~-g~~dpyv~v~l~~~~~~--~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d 336 (570)
....|.|.|.|++|++|..+... ..++|||+|++.+.+.. +.+|+...+|++|.+.+...|.-. +....|.+.||.
T Consensus 265 ~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~g 343 (405)
T KOG2060|consen 265 MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWG 343 (405)
T ss_pred hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEec
Confidence 35789999999999999876432 36899999999854332 467888889998888777666654 455689999985
Q ss_pred -CCCCCCCCceEEEEEEEccccCCCe-eeEEEEEeeccc
Q 008305 337 -DEGPMLAPEIIGIAQIALKELEPGK-VKDVWLKLVKDV 373 (570)
Q Consensus 337 -~d~~~~~d~~lG~~~i~l~~l~~~~-~~~~w~~L~~~~ 373 (570)
+.+. ..+.|+|.+.+-+.+|.... ..-.||+|....
T Consensus 344 dygRm-d~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 344 DYGRM-DHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred ccccc-chHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 5555 67789999999999997665 678899997543
No 248
>PLN02964 phosphatidylserine decarboxylase
Probab=97.30 E-value=0.00038 Score=75.66 Aligned_cols=90 Identities=19% Similarity=0.366 Sum_probs=72.6
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCC
Q 008305 441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFG 520 (570)
Q Consensus 441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~ 520 (570)
.-+|+..+++++|+ ++ ..|+|..+..- +.+.+||.+.++|.||+||+...|.+........+|.|||.+.++
T Consensus 51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~-g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK---FKDKWLACVSF-GEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS 122 (644)
T ss_pred cccCeEEEEeehhh----hc---cCCcEEEEEEe-cceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence 45789999999997 22 35887655433 468999999999999999999999886555555799999999987
Q ss_pred C-ceeEEEEEeccccccCc
Q 008305 521 K-DKMGKCIMTLTRVMMEG 538 (570)
Q Consensus 521 ~-d~lG~~~i~l~~l~~~~ 538 (570)
. +++|.+.++|.++...+
T Consensus 123 ~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred HHHhhhheeecHhhccHHH
Confidence 7 69999999998877543
No 249
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.19 E-value=0.0064 Score=53.76 Aligned_cols=124 Identities=19% Similarity=0.269 Sum_probs=93.6
Q ss_pred ccceEEEEEEEEeecCCCCC--CCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCC-------------
Q 008305 441 IVRGVLSITVIAAENLPKVD--LIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQ------------- 505 (570)
Q Consensus 441 ~~~g~L~V~v~~a~~L~~~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~------------- 505 (570)
.....|++.|..++-....- ..+..+..+.+++.-.+++++|+.+..+.+|.|+|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 34678999999988654321 115667777777766679999999999999999999999986331
Q ss_pred CcEEEEEEEECCCCCC-ceeEEEEEeccccccCceE--EEEEEecCC------CCeEEEEEEEEEecC
Q 008305 506 HEMLILDVYDHDTFGK-DKMGKCIMTLTRVMMEGEI--QDSFHIDGT------KSGKLFLNLKWTPQL 564 (570)
Q Consensus 506 ~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~--~~w~~L~~~------~~G~i~l~~~~~p~~ 564 (570)
.+.+++-|.-.+..+. .++|.-.++...++..+.. .-...|.|. ..|-+.++++..|..
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 3468888888777655 6999999999999877654 444555432 478999999988864
No 250
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.15 E-value=0.0008 Score=70.38 Aligned_cols=88 Identities=26% Similarity=0.507 Sum_probs=68.6
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEEEeCC---CceEEeeeeCCCCCCeeecEEEEEEecC----CCCeEEEEEEeCCCCCC
Q 008305 270 LVQAKELTNKDLIGKSDPFVVIFVRPLR---DRMKTSKTINNELNPIWNEHFEFTVEDA----STQHLTVRVFDDEGPML 342 (570)
Q Consensus 270 V~~A~~L~~~~~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~nP~Wne~f~f~v~~~----~~~~L~~~v~d~d~~~~ 342 (570)
..+|++|.++|..+++|||..++-.-.. ...++|.++++++||.|.+ |.+..... ....+.+.+||++.. +
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~-~ 219 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSN-G 219 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCC-C
Confidence 3558999999999999999987654211 2258999999999999985 33433221 235688999999998 8
Q ss_pred CCceEEEEEEEccccCC
Q 008305 343 APEIIGIAQIALKELEP 359 (570)
Q Consensus 343 ~d~~lG~~~i~l~~l~~ 359 (570)
+++++|.+..++.++..
T Consensus 220 ~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 220 KHDLIGKFQTTLSELQE 236 (529)
T ss_pred CcCceeEecccHHHhcc
Confidence 88999999999999864
No 251
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.60 E-value=0.11 Score=45.94 Aligned_cols=120 Identities=22% Similarity=0.290 Sum_probs=80.3
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCc-eEeCccc-CCCCCCeeeeEEEEEee---cC-----CCcEEEEE
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN-RAKTRVA-HDTLNPVWNQTFDFVVE---DG-----QHEMLILD 512 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~-~~kT~v~-~~t~nP~w~e~f~f~v~---~~-----~~~~L~i~ 512 (570)
.-.+.++|++..+++.. ...-||+...+.... ..+|... ..+..-.|||.|.+.+. +. ....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 46788999999999861 123344444332111 2344332 23456889999999884 11 23458899
Q ss_pred EEECCCCCCc-eeEEEEEeccccccC--ceEEEEEEecCC--CCeEEEEEEEEEecCCC
Q 008305 513 VYDHDTFGKD-KMGKCIMTLTRVMME--GEIQDSFHIDGT--KSGKLFLNLKWTPQLVL 566 (570)
Q Consensus 513 V~d~~~~~~d-~lG~~~i~l~~l~~~--~~~~~w~~L~~~--~~G~i~l~~~~~p~~~~ 566 (570)
|+.....++. .+|.+.|+|++.... ......++|.+. ....+++.+++.+....
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~ 140 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELRED 140 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccC
Confidence 9987544454 899999999999975 456777888765 45688888888876543
No 252
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.50 E-value=0.043 Score=48.61 Aligned_cols=128 Identities=14% Similarity=0.179 Sum_probs=88.1
Q ss_pred ceEEEEEEEEecCCCCCCC--CCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCC-------------C
Q 008305 263 CGTLDVKLVQAKELTNKDL--IGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDAS-------------T 327 (570)
Q Consensus 263 ~G~L~V~V~~A~~L~~~~~--~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~-------------~ 327 (570)
.-.|.++|..++-....-. .+..+.-..+++. -++|.++|+.+..+.+|.++|.|-|.+.... .
T Consensus 8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 4478888888876543211 1344444555444 2378899999999999999999999986432 2
Q ss_pred CeEEEEEEeCCCCCCCCceEEEEEEEccccCCCeee--EEEEEeeccccccCCCcceeEEEEEEEEEec
Q 008305 328 QHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVK--DVWLKLVKDVKVQRDTKNRGQVHLELLYCPF 394 (570)
Q Consensus 328 ~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~--~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~ 394 (570)
+.+.+.|.-.|.. +...++|...++...+...... ..-+.|.... .......|-|.++++.+|.
T Consensus 87 ~pihivli~~d~~-~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~--~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 87 DPIHIVLIRTDPS-GETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG--PESKVPVGILDLRLELLPN 152 (156)
T ss_pred CceEEEEEEecCC-CceEeeeeceehHHHHhccCCCccceeEEEeccC--CCCccceeEEEEEEEeecC
Confidence 4577888777766 6668999999999988765543 3334443221 2224578999999999875
No 253
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.71 E-value=0.81 Score=40.28 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=74.5
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc--eEEeeee-CCCCCCeeecEEEEEEec--------CCCCeEEE
Q 008305 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR--MKTSKTI-NNELNPIWNEHFEFTVED--------ASTQHLTV 332 (570)
Q Consensus 264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~-~~t~nP~Wne~f~f~v~~--------~~~~~L~~ 332 (570)
=.+.|++.+..+++.. +..+.+......+. ..+|... ..+..-.|||.|.+.+.- .....+.|
T Consensus 7 f~~~l~i~~l~~~p~~------~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 7 FQFDLTIHELENLPSS------NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred EEEEEEEEEeECcCCC------CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 3577888898888762 22333333311222 2334332 334567999999887631 12345889
Q ss_pred EEEeCCCCCCCCceEEEEEEEccccCCC--eeeEEEEEeeccccccCCCcceeEEEEEEEEEecc
Q 008305 333 RVFDDEGPMLAPEIIGIAQIALKELEPG--KVKDVWLKLVKDVKVQRDTKNRGQVHLELLYCPFG 395 (570)
Q Consensus 333 ~v~d~d~~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~ 395 (570)
.|+..... +....+|.+.++|++.... .....-++|.. .......|++++.+.+..
T Consensus 81 ~v~~~~~~-~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~------~~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 81 SVFEVDGS-GKKKVLGKVSINLAEYANEDEEPITVRLLLKK------CKKSNATLSISISLSELR 138 (143)
T ss_pred EEEEecCC-CccceEEEEEEEHHHhhCcCCCcEEEEEeCcc------CCCCCcEEEEEEEEEECc
Confidence 99988543 3336999999999999874 34445555532 235677888988887654
No 254
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.52 E-value=0.36 Score=43.35 Aligned_cols=90 Identities=17% Similarity=0.251 Sum_probs=60.9
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc---eEEeeeeCCCCCCeeecEEEEEEe--c-CCCCeEEEEEEeC
Q 008305 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR---MKTSKTINNELNPIWNEHFEFTVE--D-ASTQHLTVRVFDD 337 (570)
Q Consensus 264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~---~~~T~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~~~v~d~ 337 (570)
..++|+|++|.++.-.+ .+|-||.+.+-..+.. ...|+.+.. .++.|||...|.+. + +....|.|.+|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 46889999999987543 4688888877532211 223443443 67999999988763 2 3446799999997
Q ss_pred CCCC---CCCceEEEEEEEcccc
Q 008305 338 EGPM---LAPEIIGIAQIALKEL 357 (570)
Q Consensus 338 d~~~---~~d~~lG~~~i~l~~l 357 (570)
.... .....+|.+.++|=+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6430 1235699999998764
No 255
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.47 E-value=0.11 Score=47.49 Aligned_cols=89 Identities=21% Similarity=0.271 Sum_probs=62.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCc----eEeCcccCCCCCCeeeeEEEEEee--c-CCCcEEEEEEEEC
Q 008305 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN----RAKTRVAHDTLNPVWNQTFDFVVE--D-GQHEMLILDVYDH 516 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~V~d~ 516 (570)
..++|+|+++.++... ....+-||++.+-++.+ ...|+.+..+.++.|||.++|++. + +..+.|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 4689999999999862 23466788876643332 235555444577999999999763 3 3677899999986
Q ss_pred CCCC----------------C-ceeEEEEEecccc
Q 008305 517 DTFG----------------K-DKMGKCIMTLTRV 534 (570)
Q Consensus 517 ~~~~----------------~-d~lG~~~i~l~~l 534 (570)
...+ + ..||.+.++|-+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5321 1 3799999998874
No 256
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.39 E-value=0.25 Score=49.96 Aligned_cols=115 Identities=13% Similarity=0.245 Sum_probs=85.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEee-------cCCCcEEEEEEEECCC
Q 008305 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVE-------DGQHEMLILDVYDHDT 518 (570)
Q Consensus 446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~-------~~~~~~L~i~V~d~~~ 518 (570)
+.|.|.+|+|++... ...-.+..++++ ....|..+..+..|.||....+.+. ...+..|++++|..+.
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng--~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~ 76 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNG--ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG 76 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCC--ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC
Confidence 578899999998752 234577788864 6678888889999999999999874 2246679999998873
Q ss_pred C--CCceeEEEEEecccc---ccC--ceEEEEEEecCC------CCeEEEEEEEEEecCC
Q 008305 519 F--GKDKMGKCIMTLTRV---MME--GEIQDSFHIDGT------KSGKLFLNLKWTPQLV 565 (570)
Q Consensus 519 ~--~~d~lG~~~i~l~~l---~~~--~~~~~w~~L~~~------~~G~i~l~~~~~p~~~ 565 (570)
. .++.+|.+.++|... ..+ ..-.+||+|-+. ..-+|.+.+.......
T Consensus 77 ~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 77 STGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 2 347999999999998 433 344789999654 2467777777655443
No 257
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.29 E-value=0.14 Score=46.00 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=61.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCce----EeCcccCCCCCCeeeeEEEEEee--c-CCCcEEEEEEEEC
Q 008305 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNR----AKTRVAHDTLNPVWNQTFDFVVE--D-GQHEMLILDVYDH 516 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~----~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~V~d~ 516 (570)
..++|.|+++++++..+ .++-||++.+-++.+. ..|+.+.. .++.|||-.+|++. + +..+.|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 46889999999998643 3578888877443321 23443333 68999999989874 3 3677899999996
Q ss_pred CCCC---C--ceeEEEEEecccc
Q 008305 517 DTFG---K--DKMGKCIMTLTRV 534 (570)
Q Consensus 517 ~~~~---~--d~lG~~~i~l~~l 534 (570)
...+ + ..+|.++++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 5421 1 2699999999874
No 258
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.10 E-value=0.051 Score=59.59 Aligned_cols=91 Identities=23% Similarity=0.439 Sum_probs=68.8
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC----ceEEeeee-CCCCCCeeec-EEEEE-EecCCCCeEEEEE
Q 008305 262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD----RMKTSKTI-NNELNPIWNE-HFEFT-VEDASTQHLTVRV 334 (570)
Q Consensus 262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~----~~~~T~~~-~~t~nP~Wne-~f~f~-v~~~~~~~L~~~v 334 (570)
-.+.+.|+|+++.-|..++ ...||.|.+-..+. +.++|++. .|+.||+|+| .|.|. |--++-..|+|.|
T Consensus 701 IA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiav 776 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAV 776 (1189)
T ss_pred EEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeee
Confidence 3578899999999998766 33799999874433 34677765 5788999996 56664 3334455799999
Q ss_pred EeCCCCCCCCceEEEEEEEccccCCCe
Q 008305 335 FDDEGPMLAPEIIGIAQIALKELEPGK 361 (570)
Q Consensus 335 ~d~d~~~~~d~~lG~~~i~l~~l~~~~ 361 (570)
|+..+ .+||.-.+|+..|..|-
T Consensus 777 yeEgg-----K~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 777 YEEGG-----KFIGQRILPVDGLNAGY 798 (1189)
T ss_pred eccCC-----ceeeeeccchhcccCcc
Confidence 99754 59999999999998764
No 259
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.04 E-value=0.052 Score=59.53 Aligned_cols=91 Identities=22% Similarity=0.371 Sum_probs=69.7
Q ss_pred cccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-----CCceEeCcccCC-CCCCeeeeE-EEEE-eecCCCcEEEE
Q 008305 440 VIVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKK-----AGNRAKTRVAHD-TLNPVWNQT-FDFV-VEDGQHEMLIL 511 (570)
Q Consensus 440 ~~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~~kT~v~~~-t~nP~w~e~-f~f~-v~~~~~~~L~i 511 (570)
....+.+.|+|+++.=|...+. ..||+|.+.+ ..+.++|+++.. +.||+|+|. |.|. |--+.-+.|.|
T Consensus 699 gvIA~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRi 774 (1189)
T KOG1265|consen 699 GVIAATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRI 774 (1189)
T ss_pred ceEEeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheee
Confidence 3567889999999999976553 4899999853 124578887765 699999964 7775 22345678999
Q ss_pred EEEECCCCCCceeEEEEEeccccccC
Q 008305 512 DVYDHDTFGKDKMGKCIMTLTRVMME 537 (570)
Q Consensus 512 ~V~d~~~~~~d~lG~~~i~l~~l~~~ 537 (570)
.|++.+. .++|+=.+|++.+..+
T Consensus 775 avyeEgg---K~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 775 AVYEEGG---KFIGQRILPVDGLNAG 797 (1189)
T ss_pred eeeccCC---ceeeeeccchhcccCc
Confidence 9999764 6999999999987544
No 260
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.89 E-value=0.18 Score=46.07 Aligned_cols=91 Identities=13% Similarity=0.218 Sum_probs=58.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC---ceEEeeeeCCCCCCeeecEEEEEEe--c-CCCCeEEEEEEeC
Q 008305 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD---RMKTSKTINNELNPIWNEHFEFTVE--D-ASTQHLTVRVFDD 337 (570)
Q Consensus 264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~~~v~d~ 337 (570)
..++|+|+.+.++... ....+-||.+.+--.+. ....|+.+..+.++.|||.+.|.+. + +....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 3689999999999752 23466777766642221 1235555554567999999999763 2 3456799999997
Q ss_pred CCCC---------------CCCceEEEEEEEccc
Q 008305 338 EGPM---------------LAPEIIGIAQIALKE 356 (570)
Q Consensus 338 d~~~---------------~~d~~lG~~~i~l~~ 356 (570)
.... +.+..||.+.++|=+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5430 113567777666554
No 261
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.11 E-value=0.33 Score=43.58 Aligned_cols=91 Identities=15% Similarity=0.255 Sum_probs=59.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCC---ceEEeeeeCCCCCCeeecEEEEEEe--c-CCCCeEEEEEEeCC
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRD---RMKTSKTINNELNPIWNEHFEFTVE--D-ASTQHLTVRVFDDE 338 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~~~v~d~d 338 (570)
.++|++....++...+ ....+-|+.+.+--.+. ....|.......++.|||...|.+. + +....|.|.+|+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5678888877776521 23456677776653221 1234443343468999999998763 2 33457999999987
Q ss_pred CCCC--CCceEEEEEEEcccc
Q 008305 339 GPML--APEIIGIAQIALKEL 357 (570)
Q Consensus 339 ~~~~--~d~~lG~~~i~l~~l 357 (570)
.. + .+..||.+.++|=+-
T Consensus 88 ~~-~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EP-GSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cC-CCCcceEEEEEeEEeEcc
Confidence 65 3 467899999997764
No 262
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.06 E-value=0.61 Score=37.06 Aligned_cols=84 Identities=15% Similarity=0.245 Sum_probs=59.0
Q ss_pred CCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCCeeeE
Q 008305 285 SDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVKD 364 (570)
Q Consensus 285 ~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~ 364 (570)
++-.+.+.++ +....+|.-... .+..|++.|.+.+.. +..|+|.||-+|- ..+-|...+.|++...+.
T Consensus 9 ~eV~avLklD--n~~VgqT~Wk~~-s~q~WDQ~Fti~LdR--sRELEI~VywrD~----RslCav~~lrLEd~~~~~--- 76 (98)
T cd08687 9 SEVSAVLKLD--NTVVGQTQWKPK-SNQAWDQSFTLELER--SRELEIAVYWRDW----RSLCAVKFLKLEDERHEV--- 76 (98)
T ss_pred cceEEEEEEc--CeEEeecccccc-ccccccceeEEEeec--ccEEEEEEEEecc----hhhhhheeeEhhhhcccc---
Confidence 6678888887 345677775543 478999999999884 4689999998764 356777888888843221
Q ss_pred EEEEeeccccccCCCcceeEEEEEEEE
Q 008305 365 VWLKLVKDVKVQRDTKNRGQVHLELLY 391 (570)
Q Consensus 365 ~w~~L~~~~~~~~~~~~~G~l~l~l~~ 391 (570)
-. +-.+.|.+..+++|
T Consensus 77 -~~----------~lepqg~l~~ev~f 92 (98)
T cd08687 77 -QL----------DMEPQLCLVAELTF 92 (98)
T ss_pred -ee----------ccccccEEEEEEEe
Confidence 12 23567888777776
No 263
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.94 E-value=0.39 Score=43.11 Aligned_cols=90 Identities=22% Similarity=0.275 Sum_probs=61.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCc----eEeCcccCCCCCCeeeeEEEEEee--c-CCCcEEEEEEEEC
Q 008305 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN----RAKTRVAHDTLNPVWNQTFDFVVE--D-GQHEMLILDVYDH 516 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~V~d~ 516 (570)
..++|.++.+.++...+ ....+-||++.+-.+.+ ...|.....+.++.|||..+|++. + +..+.|.|.||+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 45778888888886521 23456777776643222 234444333468999999999863 3 3677899999997
Q ss_pred CCCC--C-ceeEEEEEecccc
Q 008305 517 DTFG--K-DKMGKCIMTLTRV 534 (570)
Q Consensus 517 ~~~~--~-d~lG~~~i~l~~l 534 (570)
+..+ + ..||.+.++|-+.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 7654 2 4899999999884
No 264
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=93.86 E-value=0.54 Score=37.33 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=58.9
Q ss_pred CCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCceeEEEEEeccccccCceEEEEE
Q 008305 465 ADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEGEIQDSF 544 (570)
Q Consensus 465 ~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~ 544 (570)
.+..+.+.+.+ .....|.-. ...+..|++.|.+.+.. ...|.|.|+-+|. ..+-|...+.|.+... ..
T Consensus 9 ~eV~avLklDn-~~VgqT~Wk-~~s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~~~------~~ 76 (98)
T cd08687 9 SEVSAVLKLDN-TVVGQTQWK-PKSNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDERH------EV 76 (98)
T ss_pred cceEEEEEEcC-eEEeecccc-ccccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhhcc------cc
Confidence 56677777753 355666643 33688999999999863 6789999998775 4577777888888322 23
Q ss_pred EecCCCCeEEEEEEEE
Q 008305 545 HIDGTKSGKLFLNLKW 560 (570)
Q Consensus 545 ~L~~~~~G~i~l~~~~ 560 (570)
.+.-.++|.+..++.|
T Consensus 77 ~~~lepqg~l~~ev~f 92 (98)
T cd08687 77 QLDMEPQLCLVAELTF 92 (98)
T ss_pred eeccccccEEEEEEEe
Confidence 3444457888888877
No 265
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.64 E-value=0.13 Score=49.97 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=74.9
Q ss_pred CCceEEEEEEEEecCCCCCCC--CCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCC
Q 008305 261 KPCGTLDVKLVQAKELTNKDL--IGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDE 338 (570)
Q Consensus 261 ~~~G~L~V~V~~A~~L~~~~~--~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d 338 (570)
...|+|.++++.+++|..... .-.-+-||++... .....+|.+.....--.|.|+|..++... ..+.+-||.|+
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d--rqh~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW~ 123 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD--RQHPARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSWP 123 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeec--ccCccccccccCCCCccchhhceeecccc--eeeeEEEeecC
Confidence 368999999999999975432 2345889999987 22345566555555558999999888743 47889999998
Q ss_pred CCCCCCceEEEEEEEccccCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305 339 GPMLAPEIIGIAQIALKELEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC 392 (570)
Q Consensus 339 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 392 (570)
.. .++++.-...+.+..+..... +.-+.| .-.++|++.+.+.+.
T Consensus 124 pq-~RHKLC~~g~l~~~~v~rqsp-d~~~Al--------~lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 124 PQ-RRHKLCHLGLLEAFVVDRQSP-DRVVAL--------YLEPRGQPPLRLPLA 167 (442)
T ss_pred ch-hhccccccchhhhhhhhhcCC-cceeee--------ecccCCCCceecccC
Confidence 87 566654333344443332221 111222 224577777776653
No 266
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.61 E-value=0.33 Score=43.65 Aligned_cols=72 Identities=21% Similarity=0.318 Sum_probs=51.7
Q ss_pred CCCCcEEEEEEeCCCc----eEeCcccCCCCCCeeeeEEEEEee--c-CCCcEEEEEEEECCCCCC-ceeEEEEEecccc
Q 008305 463 GKADPFVVLQLKKAGN----RAKTRVAHDTLNPVWNQTFDFVVE--D-GQHEMLILDVYDHDTFGK-DKMGKCIMTLTRV 534 (570)
Q Consensus 463 g~~dpyv~v~~~~~~~----~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~V~d~~~~~~-d~lG~~~i~l~~l 534 (570)
..++-||++.+-.+.. ...|+.+.-+..+.|||-..|++. + +.++.|.|+|||....++ ..+|.++++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 3467788877643322 224555555677899999999874 2 367889999999876544 4899999999874
No 267
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=93.49 E-value=0.33 Score=44.34 Aligned_cols=92 Identities=18% Similarity=0.283 Sum_probs=64.8
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCce----EeCcccC----CCCCCeeeeEEEEEee---cCCCcEEEE
Q 008305 443 RGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNR----AKTRVAH----DTLNPVWNQTFDFVVE---DGQHEMLIL 511 (570)
Q Consensus 443 ~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~----~kT~v~~----~t~nP~w~e~f~f~v~---~~~~~~L~i 511 (570)
...+.|+|.++.+++........|-|+.+.+-.+.+. ..|+... -...+.|||-.+|.+. -+..+.|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 4678899999999998765556788888877433321 2333211 1235779999888874 236778999
Q ss_pred EEEECCCCC---------C-ceeEEEEEecccc
Q 008305 512 DVYDHDTFG---------K-DKMGKCIMTLTRV 534 (570)
Q Consensus 512 ~V~d~~~~~---------~-d~lG~~~i~l~~l 534 (570)
.||+....+ + ..||.+.++|-+.
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999866543 2 4899999999874
No 268
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=93.39 E-value=0.87 Score=41.66 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=57.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCc---eEeCcccCCCCCCeeeeEEEEEee--c-CCCcEEEEEEEECC
Q 008305 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGN---RAKTRVAHDTLNPVWNQTFDFVVE--D-GQHEMLILDVYDHD 517 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~---~~kT~v~~~t~nP~w~e~f~f~v~--~-~~~~~L~i~V~d~~ 517 (570)
..++|+|.++.+ +..+......-||++.+-.+.. ..+|.....+.+|.|||-..|++. + +..+.|.|.||+..
T Consensus 10 ~~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 357788888863 3333233345677765533322 124555555678999999888874 3 35678999999853
Q ss_pred CC---------------CC--ceeEEEEEecccc
Q 008305 518 TF---------------GK--DKMGKCIMTLTRV 534 (570)
Q Consensus 518 ~~---------------~~--d~lG~~~i~l~~l 534 (570)
.. ++ ..||.+.+.|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 89 APALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred cCcccccccccccccccccccceEEEEEEEEEcC
Confidence 21 11 2688899988774
No 269
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.24 E-value=0.13 Score=50.02 Aligned_cols=115 Identities=18% Similarity=0.190 Sum_probs=73.3
Q ss_pred ccceEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCC
Q 008305 441 IVRGVLSITVIAAENLPKVDL--IGKADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDT 518 (570)
Q Consensus 441 ~~~g~L~V~v~~a~~L~~~~~--~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~ 518 (570)
..+|+|.+++..+++|.-... .-.-+-||.+.+.. ..+.+|.+......=.|.|.|...+.+ ...+.+-||.|+.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr-qh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR-QHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecc-cCccccccccCCCCccchhhceeeccc--ceeeeEEEeecCc
Confidence 457999999999999975432 23357899998752 334445444334445678999988765 4578888888776
Q ss_pred CCC-c--eeEEEEEeccccccCceEEEEEEecCCCCeEEEEEEEEE
Q 008305 519 FGK-D--KMGKCIMTLTRVMMEGEIQDSFHIDGTKSGKLFLNLKWT 561 (570)
Q Consensus 519 ~~~-d--~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~ 561 (570)
..+ + ..| -+.+..+.+... .+-+.|.-.+.|++.+++.+.
T Consensus 125 q~RHKLC~~g--~l~~~~v~rqsp-d~~~Al~lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 125 QRRHKLCHLG--LLEAFVVDRQSP-DRVVALYLEPRGQPPLRLPLA 167 (442)
T ss_pred hhhccccccc--hhhhhhhhhcCC-cceeeeecccCCCCceecccC
Confidence 433 2 455 333333333222 344566666678888877764
No 270
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.15 E-value=0.4 Score=43.17 Aligned_cols=74 Identities=19% Similarity=0.208 Sum_probs=51.9
Q ss_pred CCCCcEEEEEEEeCCCc---eEEeeeeCCCCCCeeecEEEEEEe--c-CCCCeEEEEEEeCCCCCCCCceEEEEEEEccc
Q 008305 283 GKSDPFVVIFVRPLRDR---MKTSKTINNELNPIWNEHFEFTVE--D-ASTQHLTVRVFDDEGPMLAPEIIGIAQIALKE 356 (570)
Q Consensus 283 g~~dpyv~v~l~~~~~~---~~~T~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~ 356 (570)
..+|-||.+.+-..+.. ...|+.+.-+..+.|||...|.+. + +....|.|.|||.+.. +....+|.+.++|=+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~-~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT-GKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC-CCceEEEEEEEeeEC
Confidence 45778888877532211 235555555667899999998874 2 3345799999998876 567789999998766
Q ss_pred c
Q 008305 357 L 357 (570)
Q Consensus 357 l 357 (570)
-
T Consensus 107 ~ 107 (159)
T cd08397 107 K 107 (159)
T ss_pred C
Confidence 4
No 271
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=92.97 E-value=1.4 Score=40.80 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=40.9
Q ss_pred eEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEEEeCCCCCCCC---ceEEEEEEEcc
Q 008305 300 MKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRVFDDEGPMLAP---EIIGIAQIALK 355 (570)
Q Consensus 300 ~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v~d~d~~~~~d---~~lG~~~i~l~ 355 (570)
.++|.+...+.+|.|+|++.+.+.. ....+|.|++++......+| ..+|.+.+||-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 5788888889999999999888743 35568999998865331222 46777777764
No 272
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.58 E-value=0.47 Score=43.38 Aligned_cols=93 Identities=15% Similarity=0.240 Sum_probs=61.4
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc---eEEeeeeC----CCCCCeeecEEEEEEe--c-CCCCeEEEE
Q 008305 264 GTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR---MKTSKTIN----NELNPIWNEHFEFTVE--D-ASTQHLTVR 333 (570)
Q Consensus 264 G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~---~~~T~~~~----~t~nP~Wne~f~f~v~--~-~~~~~L~~~ 333 (570)
..+.|+|.++.+++........|-|+.+.+--.+.. ...|+... -...+.|||...|.+. + +....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 468899999999987654445788888877532211 12333211 1235779999988763 2 344679999
Q ss_pred EEeCCCCCC---------CCceEEEEEEEcccc
Q 008305 334 VFDDEGPML---------APEIIGIAQIALKEL 357 (570)
Q Consensus 334 v~d~d~~~~---------~d~~lG~~~i~l~~l 357 (570)
+|+.... + .+..||.+.++|=+-
T Consensus 88 l~~~~~~-~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 88 LYGTTSS-PDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEecC-CccccccccccceEEEEEeEeeEcc
Confidence 9997654 3 346888888887653
No 273
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=92.20 E-value=1.8 Score=38.16 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=39.9
Q ss_pred eCcccCCC-CCCeeeeEEEEEee--c-CCCcEEEEEEEECCCCCC-----ceeEEEEEecccc
Q 008305 481 KTRVAHDT-LNPVWNQTFDFVVE--D-GQHEMLILDVYDHDTFGK-----DKMGKCIMTLTRV 534 (570)
Q Consensus 481 kT~v~~~t-~nP~w~e~f~f~v~--~-~~~~~L~i~V~d~~~~~~-----d~lG~~~i~l~~l 534 (570)
.|+....+ .++.|||..+|++. + +..+.|.|.||+.+.... ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 56655555 79999999888874 3 367889999998776544 4899999999885
No 274
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=91.17 E-value=1.6 Score=39.95 Aligned_cols=73 Identities=14% Similarity=0.222 Sum_probs=44.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc---eEEeeeeCCCCCCeeecEEEEEEe--c-CCCCeEEEEEEeCC
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR---MKTSKTINNELNPIWNEHFEFTVE--D-ASTQHLTVRVFDDE 338 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~---~~~T~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~~~v~d~d 338 (570)
.++|+|.++..+ ..+......-||.+.+-. +++ ..+|+...-+.++.|||...|.+. + +....|.|.||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 567888887633 322222233566654442 122 235665666678999999888763 2 33467999999974
Q ss_pred C
Q 008305 339 G 339 (570)
Q Consensus 339 ~ 339 (570)
.
T Consensus 89 ~ 89 (178)
T cd08399 89 A 89 (178)
T ss_pred c
Confidence 4
No 275
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=90.69 E-value=1.6 Score=40.14 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=40.4
Q ss_pred eEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEEEeCCCCC-CCCceEEEEEEEcc
Q 008305 300 MKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRVFDDEGPM-LAPEIIGIAQIALK 355 (570)
Q Consensus 300 ~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v~d~d~~~-~~d~~lG~~~i~l~ 355 (570)
.++|.+...+.+|.|+|++.+.+.. ....+|.|++++..... .....+|.+.+||-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 5788899999999999999988753 34568999888865430 11256777777763
No 276
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=89.64 E-value=1.8 Score=38.16 Aligned_cols=55 Identities=15% Similarity=0.355 Sum_probs=39.2
Q ss_pred EeeeeCCC-CCCeeecEEEEEEe--c-CCCCeEEEEEEeCCCCCCCC----ceEEEEEEEcccc
Q 008305 302 TSKTINNE-LNPIWNEHFEFTVE--D-ASTQHLTVRVFDDEGPMLAP----EIIGIAQIALKEL 357 (570)
Q Consensus 302 ~T~~~~~t-~nP~Wne~f~f~v~--~-~~~~~L~~~v~d~d~~~~~d----~~lG~~~i~l~~l 357 (570)
.|+...-+ .++.|||...|.+. + +....|.|.||+.+.. ..+ ..||.+.++|=+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~-~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK-KKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS-TTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC-CccccceeEEEEEEEEeECC
Confidence 55555554 79999999999874 2 3456899999998776 444 6899999997765
No 277
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=89.01 E-value=2.1 Score=39.63 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=34.0
Q ss_pred eEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEeCCCCCCCC--ceEEEEEEEccc
Q 008305 300 MKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFDDEGPMLAP--EIIGIAQIALKE 356 (570)
Q Consensus 300 ~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d~d~~~~~d--~~lG~~~i~l~~ 356 (570)
.+.|.+..++.+|.|+|+|.+.+... ...+|.|++++.....+++ ..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 56788888899999999999988543 3567999999976541122 689998888877
No 278
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=88.99 E-value=7.1 Score=35.49 Aligned_cols=97 Identities=12% Similarity=0.277 Sum_probs=64.4
Q ss_pred CcEEEEEEeCCCceEeCcccCCC--CCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCceeEEEEEeccccccCc--e--
Q 008305 466 DPFVVLQLKKAGNRAKTRVAHDT--LNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEG--E-- 539 (570)
Q Consensus 466 dpyv~v~~~~~~~~~kT~v~~~t--~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~--~-- 539 (570)
.-|+++.+++ +...+|+...-+ ..=.|||.|.+.+.. --+.|.++||.....++..|+.+.+++-...... .
T Consensus 38 ~~~ikl~~N~-k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~~~~~~~~ 115 (168)
T PF15625_consen 38 RYYIKLFFND-KEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSGLSDRLLAEVFVPVPGSTVHTSTDNV 115 (168)
T ss_pred eEEEEEEECC-EEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccCccceEEEEEEeeCCCCcccccccCC
Confidence 4578888874 456666643322 224568999999976 3567999999998855579999999987654331 1
Q ss_pred EEEEEEecC------------------------CCCeEEEEEEEEEecC
Q 008305 540 IQDSFHIDG------------------------TKSGKLFLNLKWTPQL 564 (570)
Q Consensus 540 ~~~w~~L~~------------------------~~~G~i~l~~~~~p~~ 564 (570)
...|+.+.. .-+|+|++++.|....
T Consensus 116 ~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~~~~ 164 (168)
T PF15625_consen 116 PLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWAVGE 164 (168)
T ss_pred ceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEeCCC
Confidence 233443311 1269999999997543
No 279
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=88.60 E-value=3 Score=34.22 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=47.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCc----eEeCcccCCCCCCeeeeEEEEEee---cCCCcEEEEEEEECCC
Q 008305 446 LSITVIAAENLPKVDLIGKADPFVVLQLKKAGN----RAKTRVAHDTLNPVWNQTFDFVVE---DGQHEMLILDVYDHDT 518 (570)
Q Consensus 446 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~----~~kT~v~~~t~nP~w~e~f~f~v~---~~~~~~L~i~V~d~~~ 518 (570)
+.+.+..+++.........++-||++.+-.+.+ ...|..+.-...+.|||-..|++. -+..+.|.|.||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 556777777776544333357888887743332 124544444566999999888774 3367889999998643
No 280
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=88.02 E-value=1.2 Score=49.90 Aligned_cols=106 Identities=14% Similarity=0.281 Sum_probs=78.7
Q ss_pred CCcEEEEEEEeCCCceEEeeeeCCC-CCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCCeee
Q 008305 285 SDPFVVIFVRPLRDRMKTSKTINNE-LNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKVK 363 (570)
Q Consensus 285 ~dpyv~v~l~~~~~~~~~T~~~~~t-~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~~ 363 (570)
.++|+.+.+. .....+|....+. .+|.|++.|........ ..+.+.+-+.+.. +....+|.+.++...+..+...
T Consensus 138 ~e~Ylt~~l~--~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~-g~v~~~~~~~~~~-G~s~~w~~v~~s~~~~~~~~~~ 213 (887)
T KOG1329|consen 138 LENYLTVVLH--KARYRRTHVIYEFLENSRWSFSFDIGFAHKA-GYVIFRVKGARVP-GWSKRWGRVKISFLQYCSGHRI 213 (887)
T ss_pred ccchheeeec--hhhhhchhhhhcccccchhhhhccccccccc-cEEEEeecCCccc-cceeEEEEeccchhhhhccccc
Confidence 4889988886 2344566666666 79999999988877655 4889999888887 5578999999999999988888
Q ss_pred EEEEEeeccccccCCCcceeEEEEEEEEEeccC
Q 008305 364 DVWLKLVKDVKVQRDTKNRGQVHLELLYCPFGT 396 (570)
Q Consensus 364 ~~w~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~ 396 (570)
..|+++..... +.......+.+.+.|.+...
T Consensus 214 ~~~~~Il~~d~--~~~~~~~~~~~~~~~~~~~~ 244 (887)
T KOG1329|consen 214 GGWFPILDNDG--KPHQKGSNESLRLGFTPMEK 244 (887)
T ss_pred cceeeeeccCC--ccccCCcccceEEeeEeech
Confidence 89998865432 12223344667788887654
No 281
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=85.69 E-value=7.8 Score=35.75 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=42.4
Q ss_pred eEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCCC--C-ceeEEEEEeccc
Q 008305 479 RAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTFG--K-DKMGKCIMTLTR 533 (570)
Q Consensus 479 ~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~~--~-d~lG~~~i~l~~ 533 (570)
.++|.+.+++.+|.|+|++.+.+... .+..|.|+++...... + ..+|-+.++|-+
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 56888899999999999999988533 5678999888754432 1 479999999854
No 282
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=84.91 E-value=20 Score=32.60 Aligned_cols=104 Identities=9% Similarity=0.204 Sum_probs=68.5
Q ss_pred CCCcEEEEEEEeCCCceEEeeeeCC--CCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCC-
Q 008305 284 KSDPFVVIFVRPLRDRMKTSKTINN--ELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPG- 360 (570)
Q Consensus 284 ~~dpyv~v~l~~~~~~~~~T~~~~~--t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~- 360 (570)
+..-|+++.++ ++...+|+...- ...-.+||.|.+.+.. -.+.|.++||..... .+..|+++.+|+-.....
T Consensus 36 ~~~~~ikl~~N--~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~~--~~~~la~v~vpvP~~~~~~ 110 (168)
T PF15625_consen 36 KTRYYIKLFFN--DKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSGL--SDRLLAEVFVPVPGSTVHT 110 (168)
T ss_pred heeEEEEEEEC--CEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccCc--cceEEEEEEeeCCCCcccc
Confidence 34568888887 355666765533 2334678999999976 446899999998875 789999999998766432
Q ss_pred -ee--eEEEEEeeccccc----------------cCCCcceeEEEEEEEEE
Q 008305 361 -KV--KDVWLKLVKDVKV----------------QRDTKNRGQVHLELLYC 392 (570)
Q Consensus 361 -~~--~~~w~~L~~~~~~----------------~~~~~~~G~l~l~l~~~ 392 (570)
.. ...|+........ .......|.|.+++.|.
T Consensus 111 ~~~~~~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~ 161 (168)
T PF15625_consen 111 STDNVPLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWA 161 (168)
T ss_pred cccCCceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEe
Confidence 11 3445554332211 11224578888888875
No 283
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=84.71 E-value=0.94 Score=38.46 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 008305 4 LYGMFFGISFGIGLMVAYARYENVRSRRR 32 (570)
Q Consensus 4 ~~g~~~g~~~g~~l~~~~~~~~~~r~~~~ 32 (570)
+.|+++|.++|+++.++++.|.-+|.++|
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56777888777777777776655554444
No 284
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=84.36 E-value=12 Score=34.60 Aligned_cols=39 Identities=10% Similarity=0.276 Sum_probs=31.4
Q ss_pred eEEeeeeCCCCCCeeecEEEEEEec--CCCCeEEEEEEeCC
Q 008305 300 MKTSKTINNELNPIWNEHFEFTVED--ASTQHLTVRVFDDE 338 (570)
Q Consensus 300 ~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~L~~~v~d~d 338 (570)
...|.+..++.+|.|+|++.+.+.- ....+|.|+.|+.+
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 5678888889999999999887743 34568999999965
No 285
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=84.28 E-value=5.1 Score=33.35 Aligned_cols=83 Identities=19% Similarity=0.212 Sum_probs=45.2
Q ss_pred ceEeCcccCCCCCCeeeeEEEEEeec-------CCCcEEEEEEEECCCCCCceeEEEEEeccccccCc--eEEEEEEec-
Q 008305 478 NRAKTRVAHDTLNPVWNQTFDFVVED-------GQHEMLILDVYDHDTFGKDKMGKCIMTLTRVMMEG--EIQDSFHID- 547 (570)
Q Consensus 478 ~~~kT~v~~~t~nP~w~e~f~f~v~~-------~~~~~L~i~V~d~~~~~~d~lG~~~i~l~~l~~~~--~~~~w~~L~- 547 (570)
..+.|.++. +.+|.+|-+-.|.|.. .....+.++++..-...-..+|.+++++.+++... .......|-
T Consensus 11 Etq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~i~~~~~l~g 89 (107)
T PF11618_consen 11 ETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGERIHGSATLVG 89 (107)
T ss_dssp --EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--EEEEEEE-B
T ss_pred eeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCceEEEEEEEec
Confidence 456777765 7899999998888852 13457999999866321258999999999999544 345555663
Q ss_pred --CCCCeEEEEEEEEE
Q 008305 548 --GTKSGKLFLNLKWT 561 (570)
Q Consensus 548 --~~~~G~i~l~~~~~ 561 (570)
+..-|.+...++.+
T Consensus 90 ~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 90 VSGEDFGTLEYWIRLR 105 (107)
T ss_dssp SSS-TSEEEEEEEEEE
T ss_pred cCCCeEEEEEEEEEec
Confidence 34578888877765
No 286
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=83.74 E-value=5.4 Score=32.71 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=46.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc---eEEeeeeCCCCCCeeecEEEEEEe--c-CCCCeEEEEEEeCCC
Q 008305 266 LDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR---MKTSKTINNELNPIWNEHFEFTVE--D-ASTQHLTVRVFDDEG 339 (570)
Q Consensus 266 L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~---~~~T~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~~~v~d~d~ 339 (570)
+.+++..+.+.........+|-||.+.+-..+.. ...|+.+.-...+.|||...|.+. + +....|.|.+|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 5566666666654432223578888877532221 224555554556899999988763 2 344679999998654
No 287
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=83.43 E-value=12 Score=34.70 Aligned_cols=55 Identities=13% Similarity=0.203 Sum_probs=42.2
Q ss_pred ceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCC--C--C-ceeEEEEEecc
Q 008305 478 NRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTF--G--K-DKMGKCIMTLT 532 (570)
Q Consensus 478 ~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~--~--~-d~lG~~~i~l~ 532 (570)
...+|-+.+...+|.|+|++.+.+... .+..|.|+++..... . . ..+|-+.++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 356888889999999999999988532 567899999875432 1 1 36999999986
No 288
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=82.97 E-value=6.9 Score=36.11 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=35.2
Q ss_pred ceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCCC--C--ceeEEEEEeccc
Q 008305 478 NRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTFG--K--DKMGKCIMTLTR 533 (570)
Q Consensus 478 ~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~~--~--d~lG~~~i~l~~ 533 (570)
....|.+.+++.+|.|+|+|.+.+... .+..|.|++++..... + ..+|.+.++|.+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 356788888999999999999988643 4678999999866542 1 489999999988
No 289
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=79.95 E-value=6.1 Score=36.30 Aligned_cols=56 Identities=18% Similarity=0.276 Sum_probs=38.8
Q ss_pred eEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEeCCCCC----CCCceEEEEEEEccc
Q 008305 300 MKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFDDEGPM----LAPEIIGIAQIALKE 356 (570)
Q Consensus 300 ~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d~d~~~----~~d~~lG~~~i~l~~ 356 (570)
.++|-+..+ .+|.|+|+|.+.+... ...+|.|++++..... .....+|.+.+||-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344444454 8999999999887433 4568999999976430 235677887777654
No 290
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=79.28 E-value=6.5 Score=36.02 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=39.5
Q ss_pred ceEEeeeeCCCCCCeeecEEEEEEecC--CCCeEEEEEEeCCCCCC-----CCceEEEEEEEcc
Q 008305 299 RMKTSKTINNELNPIWNEHFEFTVEDA--STQHLTVRVFDDEGPML-----APEIIGIAQIALK 355 (570)
Q Consensus 299 ~~~~T~~~~~t~nP~Wne~f~f~v~~~--~~~~L~~~v~d~d~~~~-----~d~~lG~~~i~l~ 355 (570)
....|.+..++.+|.|+|++.+.+.-. ...+|.|+.++.+...+ ....+|.+.+||-
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 356788888999999999998877433 45689999998654301 1245666666544
No 291
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=78.24 E-value=25 Score=35.14 Aligned_cols=109 Identities=12% Similarity=0.115 Sum_probs=71.8
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCe--eeeEEEEEeecCCCcEEEEEEEECCCC
Q 008305 442 VRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPV--WNQTFDFVVEDGQHEMLILDVYDHDTF 519 (570)
Q Consensus 442 ~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~--w~e~f~f~v~~~~~~~L~i~V~d~~~~ 519 (570)
..-.|.|.|++..++.. ....|+.+..+ ....+|..+.-+..-. -+++....++ ..+..|.+.++-....
T Consensus 56 RkF~LLVeI~EI~~i~k-----~khiyIef~~G--r~d~TT~~IpTsKK~RI~IqqRV~IkIR-QcDnTLkI~lfKKkLv 127 (508)
T PTZ00447 56 RTFYLLVKINEIFNINK-----YKHIYIIFSTD--KYDFTTDEIPTNKKNRIHIDQRVDIKIR-QCDETLRVDLFTTKLT 127 (508)
T ss_pred ceeeEEEEehhhhcccc-----ceeEEEEEEcC--ceEEEccccccCcCceEEEeeeeeeeee-ecCceEEEEEEecccc
Confidence 34567888888877754 33578888874 3566665554433322 2344444554 3467899999999888
Q ss_pred CCceeEEEEEeccccccCc--eEEEEEEecCC--CCeEEEEEE
Q 008305 520 GKDKMGKCIMTLTRVMMEG--EIQDSFHIDGT--KSGKLFLNL 558 (570)
Q Consensus 520 ~~d~lG~~~i~l~~l~~~~--~~~~w~~L~~~--~~G~i~l~~ 558 (570)
+..-||.+.+.++.=.-.+ .-++||.+... ..++|.++|
T Consensus 128 kk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSF 170 (508)
T PTZ00447 128 KKVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSF 170 (508)
T ss_pred ceeEEEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEe
Confidence 7789999999998644333 44789999544 355555554
No 292
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=77.44 E-value=10 Score=31.62 Aligned_cols=87 Identities=20% Similarity=0.209 Sum_probs=46.3
Q ss_pred CceEEeeeeCCCCCCeeecEEEEEEecC-------CCCeEEEEEEeCCCCCCCCceEEEEEEEccccCCCee--eEEEEE
Q 008305 298 DRMKTSKTINNELNPIWNEHFEFTVEDA-------STQHLTVRVFDDEGPMLAPEIIGIAQIALKELEPGKV--KDVWLK 368 (570)
Q Consensus 298 ~~~~~T~~~~~t~nP~Wne~f~f~v~~~-------~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~~~~--~~~w~~ 368 (570)
-+.+.|.++. +.||.+|-+-.|.|... .+..+.++++..-+. ....+|.+.+++..+..... ......
T Consensus 10 fEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~--d~~tla~~~i~l~~ll~~~~~~i~~~~~ 86 (107)
T PF11618_consen 10 FETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS--DFETLAAGQISLRPLLESNGERIHGSAT 86 (107)
T ss_dssp ---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS---EEEEEEEEE--SHHHH--S--EEEEEE
T ss_pred eeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC--CeEEEEEEEeechhhhcCCCceEEEEEE
Confidence 4567788776 77999998888887532 345799999987754 57899999999999974332 333344
Q ss_pred eeccccccCCCcceeEEEEEEEEE
Q 008305 369 LVKDVKVQRDTKNRGQVHLELLYC 392 (570)
Q Consensus 369 L~~~~~~~~~~~~~G~l~l~l~~~ 392 (570)
+.+ ..+..-|.|.+.++..
T Consensus 87 l~g-----~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 87 LVG-----VSGEDFGTLEYWIRLR 105 (107)
T ss_dssp E-B-----SSS-TSEEEEEEEEEE
T ss_pred Eec-----cCCCeEEEEEEEEEec
Confidence 432 2344788888877653
No 293
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=76.01 E-value=3.5 Score=46.33 Aligned_cols=101 Identities=21% Similarity=0.287 Sum_probs=78.3
Q ss_pred CCcEEEEEEeCCCceEeCcccCCC-CCCeeeeEEEEEeecCCCcEEEEEEEECCCCC-CceeEEEEEeccccccCceEEE
Q 008305 465 ADPFVVLQLKKAGNRAKTRVAHDT-LNPVWNQTFDFVVEDGQHEMLILDVYDHDTFG-KDKMGKCIMTLTRVMMEGEIQD 542 (570)
Q Consensus 465 ~dpyv~v~~~~~~~~~kT~v~~~t-~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~-~d~lG~~~i~l~~l~~~~~~~~ 542 (570)
.++|+.+.+.. ....+|....+. .+|.|.+.|...+.. ....+++.+.+.+..| ...+|.+.++...+..+....+
T Consensus 138 ~e~Ylt~~l~~-~~~~~t~~~~~f~e~s~~~f~~~~~~~h-~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~ 215 (887)
T KOG1329|consen 138 LENYLTVVLHK-ARYRRTHVIYEFLENSRWSFSFDIGFAH-KAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGG 215 (887)
T ss_pred ccchheeeech-hhhhchhhhhcccccchhhhhccccccc-cccEEEEeecCCccccceeEEEEeccchhhhhccccccc
Confidence 68999999863 345677777776 889999999888865 4567999999999888 5799999999999998877888
Q ss_pred EEEecCC------CCeEEEEEEEEEecCCCC
Q 008305 543 SFHIDGT------KSGKLFLNLKWTPQLVLR 567 (570)
Q Consensus 543 w~~L~~~------~~G~i~l~~~~~p~~~~~ 567 (570)
|+++-.. +.-.+.+.+.|++....+
T Consensus 216 ~~~Il~~d~~~~~~~~~~~~~~~~~~~~~~~ 246 (887)
T KOG1329|consen 216 WFPILDNDGKPHQKGSNESLRLGFTPMEKDR 246 (887)
T ss_pred eeeeeccCCccccCCcccceEEeeEeechhh
Confidence 9887321 233566778888776543
No 294
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=69.73 E-value=1.5 Score=48.31 Aligned_cols=90 Identities=19% Similarity=0.345 Sum_probs=72.5
Q ss_pred cchHHHHHHHHhHhHhHHH--HHHHHHHHhHHHHHhhcC-CCCcceEEEeEEecCCCCCeEeEEEEEeccCCCceeEEEE
Q 008305 69 QKLNWLNYQLDKLWPFINE--AASELIRSNVEPILEQYR-PSILASLSFSKLTLGTVAPQFTGVAIVESESGEEGITMEL 145 (570)
Q Consensus 69 E~~eWlN~~l~~~Wp~~~~--~~~~~~~~~~~~~l~~~~-p~~l~~i~~~~~~lG~~pP~i~~i~~~~~~~~~~~~~~d~ 145 (570)
+.+-|||.++.++.--+.+ ...+...+.++.++...+ |+++..+-..+++-|..||.|++-++.... ......++.
T Consensus 334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~-~~gv~~~~~ 412 (795)
T KOG2238|consen 334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSYIEELVCRKVDTGNLPPLITSTRVLPVE-MSGVWAFEI 412 (795)
T ss_pred hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchhhhhhhhhhhhhcCCccccccceeEEee-ccccccCcc
Confidence 4588999999999865533 266777788888777754 789999999999999999999999999875 446667789
Q ss_pred EEEEcCCCcEEEEE
Q 008305 146 EMQWDGNPNIVLDI 159 (570)
Q Consensus 146 ~~~~~~~~~i~l~~ 159 (570)
|+.|.||..+.++.
T Consensus 413 di~y~~d~~~~i~~ 426 (795)
T KOG2238|consen 413 DIEYRGDLTIIIET 426 (795)
T ss_pred ceeecccccccccc
Confidence 99999987665554
No 295
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=61.40 E-value=13 Score=28.45 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHHHHhhhhh
Q 008305 3 FLYGMFFGISFGIGLMVAYAR 23 (570)
Q Consensus 3 ~~~g~~~g~~~g~~l~~~~~~ 23 (570)
|++|+++|.++|.++.+++.-
T Consensus 1 F~~g~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFAP 21 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhCC
Confidence 688999999999988776664
No 296
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.92 E-value=2 Score=46.72 Aligned_cols=81 Identities=10% Similarity=0.079 Sum_probs=50.8
Q ss_pred CCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCCCCCCCceEEEEEEEccccCC-Cee
Q 008305 284 KSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEGPMLAPEIIGIAQIALKELEP-GKV 362 (570)
Q Consensus 284 ~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~l~~-~~~ 362 (570)
..|||+.+.+.. .+...+.+...+..|.|+|+|...+.. ...+.+.|+..... ..+.+...+++-.+++.. ...
T Consensus 27 al~~y~~v~vk~--~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~-~~~~~~a~~~~~~e~~k~~~~~ 101 (694)
T KOG0694|consen 27 ALQPYLAVELKV--KQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPD-PKALSEAQLSLQEESQKLLALE 101 (694)
T ss_pred hhhhhheeccce--eecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCc-chhhHHHhHHHHHHHHHHHhhh
Confidence 468898888862 222344456788999999999999764 35788888887544 444444444444444432 223
Q ss_pred eEEEEEe
Q 008305 363 KDVWLKL 369 (570)
Q Consensus 363 ~~~w~~L 369 (570)
...|..+
T Consensus 102 ~~~w~~~ 108 (694)
T KOG0694|consen 102 QRLWVLI 108 (694)
T ss_pred hhhcccc
Confidence 4456654
No 297
>PF15179 Myc_target_1: Myc target protein 1
Probab=58.53 E-value=7.8 Score=34.92 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=18.9
Q ss_pred ChhhhhHHHHHHHHHHHHhhhhhh
Q 008305 1 MSFLYGMFFGISFGIGLMVAYARY 24 (570)
Q Consensus 1 ~~~~~g~~~g~~~g~~l~~~~~~~ 24 (570)
|+|.+..++|+++|.++++++.+.
T Consensus 23 laF~vSm~iGLviG~li~~Lltwl 46 (197)
T PF15179_consen 23 LAFCVSMAIGLVIGALIWALLTWL 46 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888988888888777653
No 298
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=57.68 E-value=14 Score=31.79 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHhhhhh
Q 008305 4 LYGMFFGISFGIGLMVAYAR 23 (570)
Q Consensus 4 ~~g~~~g~~~g~~l~~~~~~ 23 (570)
++||++|+++|.++.-+...
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~ 22 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSS 22 (128)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 67888888888877544443
No 299
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=57.20 E-value=28 Score=25.92 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHhh
Q 008305 4 LYGMFFGISFGIGLMVA 20 (570)
Q Consensus 4 ~~g~~~g~~~g~~l~~~ 20 (570)
+..|++|+++|.++.+.
T Consensus 25 l~~f~~G~llg~l~~~~ 41 (68)
T PF06305_consen 25 LIAFLLGALLGWLLSLP 41 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55667777777655443
No 300
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=55.14 E-value=31 Score=31.61 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=41.4
Q ss_pred ceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCC----CC---ceeEEEEEeccc
Q 008305 478 NRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTF----GK---DKMGKCIMTLTR 533 (570)
Q Consensus 478 ~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~----~~---d~lG~~~i~l~~ 533 (570)
....|.|..++.+|.|+|.+.+.+.-. ....|.|+.++.+.. ++ ..+|-+.++|-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 345788888999999999998887533 456788999874332 11 369999998865
No 301
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=55.12 E-value=26 Score=32.11 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=37.7
Q ss_pred ccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCCC------CceeEEEEEeccc
Q 008305 484 VAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTFG------KDKMGKCIMTLTR 533 (570)
Q Consensus 484 v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~~------~d~lG~~~i~l~~ 533 (570)
++....+|.|+|+|.+.+... ....|.|++++..... ...+|.+.++|.+
T Consensus 58 v~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 58 VVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344448999999999988533 4678999999865332 2489999999987
No 302
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=52.14 E-value=22 Score=22.80 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=12.3
Q ss_pred hhhhhHHHHH----HHHHHHHhhhhh
Q 008305 2 SFLYGMFFGI----SFGIGLMVAYAR 23 (570)
Q Consensus 2 ~~~~g~~~g~----~~g~~l~~~~~~ 23 (570)
.+++|+++|+ ++|++.. +|..
T Consensus 4 ~lL~GiVLGlipvTl~Glfva-AylQ 28 (37)
T CHL00008 4 VLLFGIVLGLIPITLAGLFVT-AYLQ 28 (37)
T ss_pred hhhhhHHHHhHHHHHHHHHHH-HHHH
Confidence 3567777776 4566543 3444
No 303
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=51.47 E-value=22 Score=22.76 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=12.3
Q ss_pred hhhhhHHHHH----HHHHHHHhhhhh
Q 008305 2 SFLYGMFFGI----SFGIGLMVAYAR 23 (570)
Q Consensus 2 ~~~~g~~~g~----~~g~~l~~~~~~ 23 (570)
++++|+++|+ ++|++. .+|..
T Consensus 4 plL~GiVLGlipiTl~Glfv-aAylQ 28 (37)
T PRK00665 4 PLLCGIVLGLIPVTLAGLFV-AAWNQ 28 (37)
T ss_pred hhhhhHHHHhHHHHHHHHHH-HHHHH
Confidence 3567777776 456654 33444
No 304
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=49.34 E-value=25 Score=22.71 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=10.1
Q ss_pred hhhhhHHHHH----HHHHHH
Q 008305 2 SFLYGMFFGI----SFGIGL 17 (570)
Q Consensus 2 ~~~~g~~~g~----~~g~~l 17 (570)
++++|+++|+ ++|++.
T Consensus 4 plL~GiVlGli~vtl~Glfv 23 (37)
T PF02529_consen 4 PLLSGIVLGLIPVTLAGLFV 23 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHhHHHHHHHHHH
Confidence 3577777777 455554
No 305
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=47.83 E-value=18 Score=30.83 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=17.2
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhhhHH
Q 008305 2 SFLYGMFFGISFGIGLMVAYARYENVRSRR 31 (570)
Q Consensus 2 ~~~~g~~~g~~~g~~l~~~~~~~~~~r~~~ 31 (570)
+.++|.++|++..++|.+++++++.+|...
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 568999999966665555555555555443
No 306
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=46.75 E-value=56 Score=30.14 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=41.8
Q ss_pred ceEeCcccCCCCCCeeeeEEEEEeecC--CCcEEEEEEEECCCC--C-------C-ceeEEEEEeccc
Q 008305 478 NRAKTRVAHDTLNPVWNQTFDFVVEDG--QHEMLILDVYDHDTF--G-------K-DKMGKCIMTLTR 533 (570)
Q Consensus 478 ~~~kT~v~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~d~~~~--~-------~-d~lG~~~i~l~~ 533 (570)
....|.|..++.+|.|.|++-+.+.-. ....|.|+.++.+.. . . ..+|.+.++|-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 355788889999999999988877532 566799999986511 1 1 369999999876
No 307
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.67 E-value=40 Score=25.11 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=4.1
Q ss_pred hhHHHHHHHHH
Q 008305 5 YGMFFGISFGI 15 (570)
Q Consensus 5 ~g~~~g~~~g~ 15 (570)
+|+++|.++++
T Consensus 30 ~G~llg~l~~~ 40 (68)
T PF06305_consen 30 LGALLGWLLSL 40 (68)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 308
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=42.17 E-value=8 Score=42.33 Aligned_cols=92 Identities=15% Similarity=0.065 Sum_probs=55.8
Q ss_pred CCCcEEEEEEeCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECCCCCCc-eeEEEEEeccccccC-ceEE
Q 008305 464 KADPFVVLQLKKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHDTFGKD-KMGKCIMTLTRVMME-GEIQ 541 (570)
Q Consensus 464 ~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~~~~~d-~lG~~~i~l~~l~~~-~~~~ 541 (570)
..+||+.+.+.. .+...+.+.+.+..|.|+++|...+.. ...+.|.|+.....+.+ +...+++-.+++... ....
T Consensus 27 al~~y~~v~vk~-~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~ 103 (694)
T KOG0694|consen 27 ALQPYLAVELKV-KQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQR 103 (694)
T ss_pred hhhhhheeccce-eecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhh
Confidence 458898888742 222345556789999999999999764 55688888887644332 344444444444321 1224
Q ss_pred EEEEecCCCCeEEEEEEEE
Q 008305 542 DSFHIDGTKSGKLFLNLKW 560 (570)
Q Consensus 542 ~w~~L~~~~~G~i~l~~~~ 560 (570)
-|..++. .|++.....+
T Consensus 104 ~w~~~~~--~g~~~~~~~~ 120 (694)
T KOG0694|consen 104 LWVLIEE--LGTLLKPAAL 120 (694)
T ss_pred hcccccc--ccceeeeecc
Confidence 5666544 3666655444
No 309
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.82 E-value=1.8e+02 Score=25.93 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=33.6
Q ss_pred CCCCC-eeecEEEEEEecCC---CCeEEEEEEeCCCCCCCCceEEEEEEEccc
Q 008305 308 NELNP-IWNEHFEFTVEDAS---TQHLTVRVFDDEGPMLAPEIIGIAQIALKE 356 (570)
Q Consensus 308 ~t~nP-~Wne~f~f~v~~~~---~~~L~~~v~d~d~~~~~d~~lG~~~i~l~~ 356 (570)
+-.|| +||--++....... =..|.+.||..|.. ++|-+.|...+++--
T Consensus 59 ~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~-G~d~v~GYg~~hiP~ 110 (187)
T KOG4027|consen 59 GADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHS-GKDCVTGYGMLHIPT 110 (187)
T ss_pred cCCCceEEecceEEEeccCCCCCCceEEEEEecCCcC-CcceeeeeeeEecCc
Confidence 44455 67866655554321 13588999999999 999999998887643
No 310
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=39.65 E-value=29 Score=25.90 Aligned_cols=15 Identities=27% Similarity=0.651 Sum_probs=7.4
Q ss_pred hhhhhHHHHHHHHHH
Q 008305 2 SFLYGMFFGISFGIG 16 (570)
Q Consensus 2 ~~~~g~~~g~~~g~~ 16 (570)
|.+||+++|+++.+.
T Consensus 51 GILYGlVIGlil~~i 65 (75)
T COG4064 51 GILYGLVIGLILCMI 65 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555544433
No 311
>PRK11677 hypothetical protein; Provisional
Probab=39.03 E-value=38 Score=29.36 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHh
Q 008305 4 LYGMFFGISFGIGLMV 19 (570)
Q Consensus 4 ~~g~~~g~~~g~~l~~ 19 (570)
+.||++|+++|.++.-
T Consensus 7 ~i~livG~iiG~~~~R 22 (134)
T PRK11677 7 LIGLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4566666666665543
No 312
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=37.20 E-value=4.4e+02 Score=26.72 Aligned_cols=109 Identities=15% Similarity=0.234 Sum_probs=68.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCceEEeeeeCCCCCC--eeecEEEEEEecCCCCeEEEEEEeCCCCCC
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDRMKTSKTINNELNP--IWNEHFEFTVEDASTQHLTVRVFDDEGPML 342 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP--~Wne~f~f~v~~~~~~~L~~~v~d~d~~~~ 342 (570)
.|-|.+.+-.++.. ...-|+.+..+ ....+|..+.-+..- .-.|.....+..- ..+|++.+|-..-.
T Consensus 59 ~LLVeI~EI~~i~k-----~khiyIef~~G---r~d~TT~~IpTsKK~RI~IqqRV~IkIRQc-DnTLkI~lfKKkLv-- 127 (508)
T PTZ00447 59 YLLVKINEIFNINK-----YKHIYIIFSTD---KYDFTTDEIPTNKKNRIHIDQRVDIKIRQC-DETLRVDLFTTKLT-- 127 (508)
T ss_pred eEEEEehhhhcccc-----ceeEEEEEEcC---ceEEEccccccCcCceEEEeeeeeeeeeec-CceEEEEEEecccc--
Confidence 46667666555532 34678888876 444555444322222 2224444444433 35899999987665
Q ss_pred CCceEEEEEEEccc-c-CCCeeeEEEEEeeccccccCCCcceeEEEEEEE
Q 008305 343 APEIIGIAQIALKE-L-EPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELL 390 (570)
Q Consensus 343 ~d~~lG~~~i~l~~-l-~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~ 390 (570)
+..-||...+.+.. + ...-+.+.||-+.+ +++..+++.+++.
T Consensus 128 kk~hIgdI~InIn~dIIdk~FPKnkWy~c~k------DGq~~cRIqLSFh 171 (508)
T PTZ00447 128 KKVHIGQIKIDINASVISKSFPKNEWFVCFK------DGQEICKVQMSFY 171 (508)
T ss_pred ceeEEEEEEecccHHHHhccCCccceEEEec------CCceeeeEEEEeh
Confidence 67889999999874 3 33445789999943 5677888887764
No 313
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=36.79 E-value=41 Score=35.54 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 008305 3 FLYGMFFGISFGIGLMVAYARYENVRSRRRAELANIV 39 (570)
Q Consensus 3 ~~~g~~~g~~~g~~l~~~~~~~~~~r~~~~~~~~~~~ 39 (570)
.++.+-+|+++|+.+.++|++++.++.+.+.++.++.
T Consensus 241 ~~~alp~g~l~sl~~~l~~l~~~rr~~sp~~rL~~Ai 277 (524)
T COG4943 241 LFLALPLGILISLLALLLWLRIRRRYLSPRRRLQRAI 277 (524)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 3667788999999999999998777766666665554
No 314
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=36.50 E-value=4.7e+02 Score=27.65 Aligned_cols=87 Identities=22% Similarity=0.322 Sum_probs=53.9
Q ss_pred cCCCCCeEeEEEEEeccCCCceeEEEEEEEEcCCCcEEEEEeeeeeeeeeEEEEEEEEEEEEEEEeeeCCCCCCcccEEE
Q 008305 119 LGTVAPQFTGVAIVESESGEEGITMELEMQWDGNPNIVLDIRTRVGVGLPVQVKNIGFTGVFRLIFKPLVDEFPCFGAVA 198 (570)
Q Consensus 119 lG~~pP~i~~i~~~~~~~~~~~~~~d~~~~~~~~~~i~l~~~~~~g~~~~v~v~~~~~~g~lrv~l~pl~~~~P~~~~~~ 198 (570)
.|..--+|.++++|.. + +.+++.+++.-. +.|++.+.=+|..+.--- +
T Consensus 280 ~~~~~v~v~~v~v~g~--~-~rl~i~~~~~g~-------------------------~~G~i~l~G~P~yD~~~~----~ 327 (427)
T PF14356_consen 280 SGGKKVTVKSVSVYGS--G-DRLVIALDVTGS-------------------------LNGTIYLSGRPVYDPATQ----T 327 (427)
T ss_pred CCCceEEEEEEEEEec--C-CcEEEEEEEEEE-------------------------EEEEEEEEEEEEECCCCC----E
Confidence 7777788999999985 2 434444333311 556666666665555332 2
Q ss_pred EEeccCcceeEEEEEeccccccCcch-HHHHHHHHHHHHHhhccccc
Q 008305 199 YSLREKKDLDFTLKVVGGDISSIPGI-SDAIEETIIDAIEDSITWPV 244 (570)
Q Consensus 199 ~~f~~~P~id~~l~~~g~~~~~iP~l-~~~i~~~i~~~i~~~~v~P~ 244 (570)
++|. ++||++..-+. +-+. +-+.+..|.+.|++.++.|-
T Consensus 328 l~l~---dld~~~~t~~~----l~~~a~wl~~~~i~~~i~~~~~~~l 367 (427)
T PF14356_consen 328 LRLE---DLDFDLDTKNF----LLKTAAWLLHGRIRKAIEEKLVFDL 367 (427)
T ss_pred EEEE---eeEEEecccch----HHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 4444 78888865432 2333 34568888888988887764
No 315
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=35.11 E-value=22 Score=28.34 Aligned_cols=35 Identities=11% Similarity=0.309 Sum_probs=31.2
Q ss_pred CCCCCCceecCCccchHHHHHHHHhHhHhHHHHHH
Q 008305 56 PEFYPPWVVFQQRQKLNWLNYQLDKLWPFINEAAS 90 (570)
Q Consensus 56 ~~~~p~w~~~~~~E~~eWlN~~l~~~Wp~~~~~~~ 90 (570)
..+||+|+...|.---.-.|.+....|.+.+.+++
T Consensus 36 LGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~ 70 (108)
T KOG4092|consen 36 LGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYIN 70 (108)
T ss_pred ecccHHHHHhccCChHHHHHHHHHHHHHHHhheec
Confidence 46799999999988888999999999999988877
No 316
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=35.07 E-value=24 Score=39.84 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=52.7
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCC--CceEEeeeeCCCCCCeeecEEEEEEecCCCCeEEEEEEeCCC
Q 008305 262 PCGTLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLR--DRMKTSKTINNELNPIWNEHFEFTVEDASTQHLTVRVFDDEG 339 (570)
Q Consensus 262 ~~G~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~L~~~v~d~d~ 339 (570)
.-|.+.+.+.+|..++.. ..-||...+...+ .-+.+|.++.+|..|.||+.|+..+.. .|..++..++.+.
T Consensus 757 ~ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKTEKST 829 (1112)
T ss_pred cccceeeeeccccccccc-----cceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhhcccc
Confidence 578999999999998653 4568887765322 235688999999999999999888764 4556677766543
No 317
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=34.03 E-value=87 Score=34.12 Aligned_cols=44 Identities=23% Similarity=0.375 Sum_probs=26.7
Q ss_pred CCCCc-eecCCccchHHHHHHHHhHhHhHHHHHHHHHHHhHHHHHhh
Q 008305 58 FYPPW-VVFQQRQKLNWLNYQLDKLWPFINEAASELIRSNVEPILEQ 103 (570)
Q Consensus 58 ~~p~w-~~~~~~E~~eWlN~~l~~~Wp~~~~~~~~~~~~~~~~~l~~ 103 (570)
++|-- +.+.+.-.+||.|-.+...++-- .+.+.+.+.+..++.+
T Consensus 83 nmPiGii~~~e~~~veW~Npf~~~if~~~--~~~~~~~~~~~~il~~ 127 (655)
T COG3887 83 NMPIGIILFNETNKVEWVNPFASKIFNKN--EIGESLSELIPEILKQ 127 (655)
T ss_pred hCCceEEEEcCCCceEEecHHHHHhcChh--hhhhhHHHHhHHHHHH
Confidence 35544 35677788999999998887622 1224444444444444
No 318
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=33.39 E-value=36 Score=25.54 Aligned_cols=15 Identities=20% Similarity=0.826 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHhh
Q 008305 6 GMFFGISFGIGLMVA 20 (570)
Q Consensus 6 g~~~g~~~g~~l~~~ 20 (570)
|++-|+++|+++++.
T Consensus 48 GIlYG~v~Glii~~~ 62 (70)
T PF04210_consen 48 GILYGLVIGLIIFII 62 (70)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445555544443
No 319
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=33.29 E-value=52 Score=34.34 Aligned_cols=43 Identities=21% Similarity=0.426 Sum_probs=31.2
Q ss_pred eEEEEEEEccc-cCCCeeeEEEEEeeccccccCCCcceeEEEEEEEEE
Q 008305 346 IIGIAQIALKE-LEPGKVKDVWLKLVKDVKVQRDTKNRGQVHLELLYC 392 (570)
Q Consensus 346 ~lG~~~i~l~~-l~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~l~~~ 392 (570)
.+|.+.|++.. +..+...+.|+++.... ......|.+ +++.|.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~---~~~~~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVD---NKSVGEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCC---CCCcCcceE-EEEEee
Confidence 48999999999 56667889999987542 233345666 677764
No 320
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=32.90 E-value=25 Score=39.73 Aligned_cols=70 Identities=23% Similarity=0.325 Sum_probs=51.2
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---eCCCceEeCcccCCCCCCeeeeEEEEEeecCCCcEEEEEEEECC
Q 008305 441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQL---KKAGNRAKTRVAHDTLNPVWNQTFDFVVEDGQHEMLILDVYDHD 517 (570)
Q Consensus 441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~---~~~~~~~kT~v~~~t~nP~w~e~f~f~v~~~~~~~L~i~V~d~~ 517 (570)
...|.+.+.+++|..+.. ..+.||...+ +....+.+|+++.+|..|.||+.|+..+-. .+...+..++++
T Consensus 756 l~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ek~ 828 (1112)
T KOG4269|consen 756 LLYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKTEKS 828 (1112)
T ss_pred ccccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhhccc
Confidence 446788999999998864 3356887665 233457799999999999999999988753 344556666554
No 321
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=32.61 E-value=36 Score=29.85 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=17.4
Q ss_pred hhhhhHHHHHHHHHHHHhhhhh
Q 008305 2 SFLYGMFFGISFGIGLMVAYAR 23 (570)
Q Consensus 2 ~~~~g~~~g~~~g~~l~~~~~~ 23 (570)
.+++|+++|+++|++.+++..+
T Consensus 91 dlL~G~liGff~g~~~~~~L~~ 112 (140)
T PF13373_consen 91 DLLWGLLIGFFFGLFSLFWLLR 112 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHhh
Confidence 3689999999999998665444
No 322
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=32.28 E-value=13 Score=27.45 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHh
Q 008305 4 LYGMFFGISFGIGLMV 19 (570)
Q Consensus 4 ~~g~~~g~~~g~~l~~ 19 (570)
+-|.++|+++.++|++
T Consensus 15 IaG~Vvgll~ailLIl 30 (64)
T PF01034_consen 15 IAGGVVGLLFAILLIL 30 (64)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555444443
No 323
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=30.89 E-value=4e+02 Score=23.99 Aligned_cols=83 Identities=8% Similarity=0.107 Sum_probs=53.7
Q ss_pred EEEEEecCCCCCCCCCCCCcEEEEEEEe-------CCCc-eEEeeeeCC-----CCCCeeecEEEEEEecCC--C-CeEE
Q 008305 268 VKLVQAKELTNKDLIGKSDPFVVIFVRP-------LRDR-MKTSKTINN-----ELNPIWNEHFEFTVEDAS--T-QHLT 331 (570)
Q Consensus 268 V~V~~A~~L~~~~~~g~~dpyv~v~l~~-------~~~~-~~~T~~~~~-----t~nP~Wne~f~f~v~~~~--~-~~L~ 331 (570)
=.|.+|.+.. ..+-||+-.+.- .+.. ...|.+... +..-.||.-|.+...... . -.|.
T Consensus 6 G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~ 79 (168)
T PF07162_consen 6 GEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLV 79 (168)
T ss_pred EEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEE
Confidence 3466777553 345688877752 1122 345554432 344689988877764332 2 4799
Q ss_pred EEEEeCCCCCCCCceEEEEEEEcccc
Q 008305 332 VRVFDDEGPMLAPEIIGIAQIALKEL 357 (570)
Q Consensus 332 ~~v~d~d~~~~~d~~lG~~~i~l~~l 357 (570)
++||..|.. +++.+.|...+.|-.-
T Consensus 80 l~V~~~D~~-gr~~~~GYG~~~lP~~ 104 (168)
T PF07162_consen 80 LQVYSLDSW-GRDRVEGYGFCHLPTQ 104 (168)
T ss_pred EEEEEEccc-CCeEEeEEeEEEeCCC
Confidence 999999999 9999998877776433
No 324
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=30.85 E-value=3.8e+02 Score=23.72 Aligned_cols=93 Identities=14% Similarity=0.152 Sum_probs=46.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEEeCCCc----eEEeeeeCCCCC--CeeecEEEEEE--ec-CCCCeEEEEEE
Q 008305 265 TLDVKLVQAKELTNKDLIGKSDPFVVIFVRPLRDR----MKTSKTINNELN--PIWNEHFEFTV--ED-ASTQHLTVRVF 335 (570)
Q Consensus 265 ~L~V~V~~A~~L~~~~~~g~~dpyv~v~l~~~~~~----~~~T~~~~~t~n--P~Wne~f~f~v--~~-~~~~~L~~~v~ 335 (570)
.|.|.|.+.. |+. .....|||+.|++....+. .+.|.+.....+ -.||.+.++.. ++ +.+..+.|++.
T Consensus 14 ~l~v~Iekig-lkd--a~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~k 90 (147)
T PF14186_consen 14 YLSVFIEKIG-LKD--ASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEFK 90 (147)
T ss_dssp EEEEEEEEEE--TT--GGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEEE
T ss_pred eEEEEEEEEE-ECC--hHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEEE
Confidence 5667666554 543 3345799999999854443 355655422222 23443332221 11 23456889999
Q ss_pred eCCCCCCCCceEEEEEEEccccCCC
Q 008305 336 DDEGPMLAPEIIGIAQIALKELEPG 360 (570)
Q Consensus 336 d~d~~~~~d~~lG~~~i~l~~l~~~ 360 (570)
++.....+-...+.+-++++++..+
T Consensus 91 H~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 91 HYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEETTTTCEEEEEEEEEEGGG--SE
T ss_pred eeeccceeeeeeEEEEEEhhhccCC
Confidence 9766512334466777777777655
No 325
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=30.66 E-value=2.8e+02 Score=25.92 Aligned_cols=25 Identities=28% Similarity=0.711 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhh
Q 008305 4 LYGMFFGISFGIGLMVAYARYENVR 28 (570)
Q Consensus 4 ~~g~~~g~~~g~~l~~~~~~~~~~r 28 (570)
.+|.++|+++|+.+..+|-.|...+
T Consensus 4 ~vg~l~al~laf~~~~~~~~~~~a~ 28 (209)
T PF14023_consen 4 VVGVLFALLLAFTISSAWSRYDNAR 28 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999998765544
No 326
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=30.51 E-value=92 Score=25.73 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=17.4
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhh
Q 008305 2 SFLYGMFFGISFGIGLMVAYARY 24 (570)
Q Consensus 2 ~~~~g~~~g~~~g~~l~~~~~~~ 24 (570)
.|+.|+++-+.+.+.|+.+.++.
T Consensus 62 lffvglii~LivSLaLVsFvIFL 84 (128)
T PF15145_consen 62 LFFVGLIIVLIVSLALVSFVIFL 84 (128)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHh
Confidence 36888998888888887665554
No 327
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=29.79 E-value=3.5e+02 Score=23.02 Aligned_cols=90 Identities=11% Similarity=0.151 Sum_probs=51.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCceEeCcccCCCCCCee-eeEEEEEee--cCCCcEEEEEEEECCC--
Q 008305 444 GVLSITVIAAENLPKVDLIGKADPFVVLQLKKAGNRAKTRVAHDTLNPVW-NQTFDFVVE--DGQHEMLILDVYDHDT-- 518 (570)
Q Consensus 444 g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~w-~e~f~f~v~--~~~~~~L~i~V~d~~~-- 518 (570)
..|.++-+.-.++|..+..+.+.||++|+-++ .....|...... .... ...+.+.+. -+-...+.|++++.+.
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~ 81 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYNGG-KKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSS 81 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSCCTEEEEEEETT-EEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTE
T ss_pred eeEEEEEEEEECCCccCCCCCEEEEEEEECCC-ccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcc
Confidence 34555555667777766667789999998643 233233322221 1111 122333332 2224568999999873
Q ss_pred CCCceeEEEEEeccccc
Q 008305 519 FGKDKMGKCIMTLTRVM 535 (570)
Q Consensus 519 ~~~d~lG~~~i~l~~l~ 535 (570)
..++.+.++.+.-.=+.
T Consensus 82 ~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 82 MSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp CCCEEEEEEEEEGGGSB
T ss_pred cccCeEEEEEEeeeeee
Confidence 34568999998877765
No 328
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=29.79 E-value=53 Score=24.66 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=14.3
Q ss_pred hhhhhHHHHHHHHHHHHh
Q 008305 2 SFLYGMFFGISFGIGLMV 19 (570)
Q Consensus 2 ~~~~g~~~g~~~g~~l~~ 19 (570)
|.+||+++|+++-+++.+
T Consensus 48 GIlYG~v~Glii~~~~~~ 65 (70)
T PF04210_consen 48 GILYGLVIGLIIFIIYIV 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 679999999987776544
No 329
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=29.74 E-value=45 Score=25.73 Aligned_cols=15 Identities=7% Similarity=0.067 Sum_probs=6.5
Q ss_pred HHHHHHHhhhhhhhh
Q 008305 12 SFGIGLMVAYARYEN 26 (570)
Q Consensus 12 ~~g~~l~~~~~~~~~ 26 (570)
++.++....|++|.+
T Consensus 14 ~ifVap~wl~lHY~~ 28 (75)
T TIGR02976 14 VIFVAPLWLILHYRS 28 (75)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333334555544
No 330
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=29.70 E-value=77 Score=23.80 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHhh
Q 008305 5 YGMFFGISFGIGLMVA 20 (570)
Q Consensus 5 ~g~~~g~~~g~~l~~~ 20 (570)
+|++-|+++|++-++.
T Consensus 36 IGvi~gi~~~~lt~lt 51 (68)
T PF04971_consen 36 IGVIGGIFFGLLTYLT 51 (68)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5777777777665443
No 331
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=29.10 E-value=54 Score=24.59 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=5.2
Q ss_pred hhhhHHHHHHH
Q 008305 3 FLYGMFFGISF 13 (570)
Q Consensus 3 ~~~g~~~g~~~ 13 (570)
.+||+++|+++
T Consensus 49 IlYG~viGlli 59 (70)
T TIGR01149 49 ILYGLVIGLIL 59 (70)
T ss_pred HHHHHHHHHHH
Confidence 34555555433
No 332
>PF15102 TMEM154: TMEM154 protein family
Probab=28.70 E-value=14 Score=32.29 Aligned_cols=6 Identities=33% Similarity=1.038 Sum_probs=3.3
Q ss_pred HHHHHH
Q 008305 72 NWLNYQ 77 (570)
Q Consensus 72 eWlN~~ 77 (570)
.|+|+.
T Consensus 132 kwm~s~ 137 (146)
T PF15102_consen 132 KWMNSM 137 (146)
T ss_pred hHHHhh
Confidence 466653
No 333
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=27.94 E-value=55 Score=27.51 Aligned_cols=21 Identities=29% Similarity=0.675 Sum_probs=17.9
Q ss_pred hhhhhHHHHHHHHHHHHhhhh
Q 008305 2 SFLYGMFFGISFGIGLMVAYA 22 (570)
Q Consensus 2 ~~~~g~~~g~~~g~~l~~~~~ 22 (570)
.||+|.++|.++|....++|.
T Consensus 6 ~~l~G~liGgiiGa~aaLL~A 26 (115)
T COG4980 6 DFLFGILIGGIIGAAAALLFA 26 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHhC
Confidence 689999999999998776665
No 334
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=26.73 E-value=4.5e+02 Score=23.25 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=48.8
Q ss_pred ccceEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC-----ceEeCcccCCCCC--CeeeeEEEEEe--e-cCCCcEEE
Q 008305 441 IVRGVLSITVIAAENLPKVDLIGKADPFVVLQLKKAG-----NRAKTRVAHDTLN--PVWNQTFDFVV--E-DGQHEMLI 510 (570)
Q Consensus 441 ~~~g~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-----~~~kT~v~~~t~n--P~w~e~f~f~v--~-~~~~~~L~ 510 (570)
.....|.|.|.+.. |. |.....|||+.|++.+.+ ..+.|.+-....+ =.||...++.. . -+....+.
T Consensus 10 ~g~t~l~v~Iekig-lk--da~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~ 86 (147)
T PF14186_consen 10 PGMTYLSVFIEKIG-LK--DASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIF 86 (147)
T ss_dssp TT--EEEEEEEEEE--T--TGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEE
T ss_pred CCCceEEEEEEEEE-EC--ChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEE
Confidence 34567888887776 54 344557999999996432 2456766533222 23443333322 1 22567799
Q ss_pred EEEEECCCCCCc--eeEEEEEeccccccC
Q 008305 511 LDVYDHDTFGKD--KMGKCIMTLTRVMME 537 (570)
Q Consensus 511 i~V~d~~~~~~d--~lG~~~i~l~~l~~~ 537 (570)
+++.++..-.+. ..|-+-+.++++..+
T Consensus 87 fE~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 87 FEFKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred EEEEeeeccceeeeeeEEEEEEhhhccCC
Confidence 999998765443 567777777776544
No 335
>PRK09458 pspB phage shock protein B; Provisional
Probab=26.59 E-value=45 Score=25.58 Aligned_cols=7 Identities=14% Similarity=0.543 Sum_probs=3.4
Q ss_pred hhhhhhh
Q 008305 20 AYARYEN 26 (570)
Q Consensus 20 ~~~~~~~ 26 (570)
.|.+|.+
T Consensus 22 L~LHY~s 28 (75)
T PRK09458 22 LWLHYRS 28 (75)
T ss_pred HHHhhcc
Confidence 3555544
No 336
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=26.56 E-value=1.7e+02 Score=19.89 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=12.2
Q ss_pred ChhhhhHHHHHHHHHHHHh
Q 008305 1 MSFLYGMFFGISFGIGLMV 19 (570)
Q Consensus 1 ~~~~~g~~~g~~~g~~l~~ 19 (570)
|+-++-.++++++.+++++
T Consensus 1 mp~wlt~iFsvvIil~If~ 19 (49)
T PF11044_consen 1 MPTWLTTIFSVVIILGIFA 19 (49)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 6667777777766555543
No 337
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=26.45 E-value=58 Score=25.12 Aligned_cols=6 Identities=17% Similarity=0.434 Sum_probs=2.6
Q ss_pred hhhhhh
Q 008305 21 YARYEN 26 (570)
Q Consensus 21 ~~~~~~ 26 (570)
|.+|..
T Consensus 23 ~lHY~s 28 (75)
T PF06667_consen 23 ILHYRS 28 (75)
T ss_pred HHHHHH
Confidence 444433
No 338
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=25.22 E-value=62 Score=25.49 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=4.6
Q ss_pred hhhHHHHHHH
Q 008305 4 LYGMFFGISF 13 (570)
Q Consensus 4 ~~g~~~g~~~ 13 (570)
.++.+.|+++
T Consensus 36 ~~lvI~~iFi 45 (94)
T PF05393_consen 36 WFLVICGIFI 45 (94)
T ss_pred hHHHHHHHHH
Confidence 4444555433
No 339
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=24.42 E-value=1.5e+02 Score=25.10 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=10.1
Q ss_pred hhhhhHHHHHHHHHH
Q 008305 2 SFLYGMFFGISFGIG 16 (570)
Q Consensus 2 ~~~~g~~~g~~~g~~ 16 (570)
++++|+..|+.+|++
T Consensus 43 slL~Gi~~G~~vG~~ 57 (118)
T PF12597_consen 43 SLLYGIAGGFGVGGL 57 (118)
T ss_pred HHHHHHHHHHHHHhh
Confidence 467777777776654
No 340
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=24.12 E-value=89 Score=24.07 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=7.6
Q ss_pred hhhhhHHHHHHHHHH
Q 008305 2 SFLYGMFFGISFGIG 16 (570)
Q Consensus 2 ~~~~g~~~g~~~g~~ 16 (570)
|.+||+++|+++-+.
T Consensus 51 GIlYG~viGlli~~i 65 (77)
T PRK01026 51 GILYGLVIGLLIVLV 65 (77)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555544433
No 341
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=23.79 E-value=2e+02 Score=25.21 Aligned_cols=6 Identities=33% Similarity=1.226 Sum_probs=2.4
Q ss_pred HHHHHH
Q 008305 72 NWLNYQ 77 (570)
Q Consensus 72 eWlN~~ 77 (570)
+|++.+
T Consensus 97 ~W~~fL 102 (146)
T PF14316_consen 97 AWLQFL 102 (146)
T ss_pred HHHHHH
Confidence 344433
No 342
>PF14851 FAM176: FAM176 family
Probab=23.71 E-value=47 Score=29.53 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHHHHHHhhhhhh
Q 008305 3 FLYGMFFGISFGIGLMVAYARY 24 (570)
Q Consensus 3 ~~~g~~~g~~~g~~l~~~~~~~ 24 (570)
|+.|+.+|+++.|++++.-+-.
T Consensus 26 Fv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 26 FVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHHHHhhhee
Confidence 6889999999999998775543
No 343
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=23.63 E-value=1.1e+02 Score=31.44 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 008305 4 LYGMFFGISFGIGLMVAYARYENVRSRRRA 33 (570)
Q Consensus 4 ~~g~~~g~~~g~~l~~~~~~~~~~r~~~~~ 33 (570)
+..++-.+++|++..+++.++.-+|+++|-
T Consensus 175 ~~pliP~~i~Gl~~vl~lA~~lG~kErkRl 204 (433)
T COG2851 175 FVPLIPIQIIGLVLVLALAWLLGKKERKRL 204 (433)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 445566666777666666655555555553
No 344
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=22.43 E-value=1.3e+02 Score=25.07 Aligned_cols=31 Identities=26% Similarity=0.153 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 008305 3 FLYGMFFGISFGIGLMVAYARYENVRSRRRA 33 (570)
Q Consensus 3 ~~~g~~~g~~~g~~l~~~~~~~~~~r~~~~~ 33 (570)
+.++.++|-|+.+.|..+=..++-+|..||.
T Consensus 84 ~aLp~VIGGLcaL~LaamGA~~LLrR~cRr~ 114 (126)
T PF03229_consen 84 FALPLVIGGLCALTLAAMGAGALLRRCCRRA 114 (126)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788877777776654444455555543
No 345
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=22.01 E-value=23 Score=38.39 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=46.2
Q ss_pred ceEEEEEEEEecCCCCC--CC--CCCCCcEEEEEEEeCCCceEEeeeeCCCCCCeeecEEEEEEecCCC-CeEEEEEEeC
Q 008305 263 CGTLDVKLVQAKELTNK--DL--IGKSDPFVVIFVRPLRDRMKTSKTINNELNPIWNEHFEFTVEDAST-QHLTVRVFDD 337 (570)
Q Consensus 263 ~G~L~V~V~~A~~L~~~--~~--~g~~dpyv~v~l~~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~-~~L~~~v~d~ 337 (570)
.|....+++.|.+++.- +. .-..++++...++ .+.++|+....+.+|+|||. .+.+.+.++ ..|...+.++
T Consensus 279 ~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~---~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~ 354 (975)
T KOG2419|consen 279 TGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFG---EQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGY 354 (975)
T ss_pred hhhHHHHHhhhhcccchhhhhhhccCCCchheeecc---hhhhhhhhhccccccccccc-ccccccchhhHHHhhhcccc
Confidence 45555566666665431 11 1246789988887 77899999999999999997 555544332 2344444444
Q ss_pred CC
Q 008305 338 EG 339 (570)
Q Consensus 338 d~ 339 (570)
+.
T Consensus 355 ~~ 356 (975)
T KOG2419|consen 355 CE 356 (975)
T ss_pred cc
Confidence 43
No 346
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.62 E-value=1.7e+02 Score=25.06 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccCChhhhhh
Q 008305 4 LYGMFFGISFGIGLMVAYARYENVRSRRRAELANIVAAFSRMTVQDSRK 52 (570)
Q Consensus 4 ~~g~~~g~~~g~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 52 (570)
++|+++|+++|.+++-+--.-......-..++......++....+-..+
T Consensus 12 ~igLvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~K~~ld~~rqel~~H 60 (138)
T COG3105 12 LIGLVVGIIIGALIARLTNRKLKQQQKLQYELEKVKAQLDEYRQELVKH 60 (138)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Done!