BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008307
         (570 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UW3|A Chain A, Crystal Structure Of An Aspartate-Semialdehyde
           Dehydrogenase From Burkholderia Thailandensis
 pdb|3UW3|B Chain B, Crystal Structure Of An Aspartate-Semialdehyde
           Dehydrogenase From Burkholderia Thailandensis
          Length = 377

 Score = 29.6 bits (65), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 430 GPGSVVCVGSEWHRYPSSFFIPNYVGEVRWLDDGFRGLLPLPFNSTLGGTSAAPSYFNNE 489
           GPGS+      W     S  +       R  ++G   L+   F ST      APS+  NE
Sbjct: 1   GPGSMNVGLVGWRGMVGSVLMQ------RMQEEGDFDLIEPVFFSTSNAGGKAPSFAKNE 54

Query: 490 NKASDQQFLQDVEACTFLVELQ 511
               D   + D++ C  ++  Q
Sbjct: 55  TTLKDATSIDDLKKCDVIITCQ 76


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,212,281
Number of Sequences: 62578
Number of extensions: 660517
Number of successful extensions: 1405
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1404
Number of HSP's gapped (non-prelim): 1
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)