Query 008307
Match_columns 570
No_of_seqs 240 out of 850
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 22:09:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2515 Mannosyltransferase [C 100.0 6E-139 1E-143 1077.0 34.3 528 38-568 7-558 (568)
2 PLN02816 mannosyltransferase 100.0 9.2E-79 2E-83 668.8 40.1 434 45-513 38-504 (546)
3 PF03901 Glyco_transf_22: Alg9 100.0 1.6E-73 3.6E-78 616.0 33.0 389 48-451 2-418 (418)
4 KOG1771 GPI-alpha-mannosyltran 100.0 3.8E-66 8.3E-71 527.0 18.3 394 48-512 6-423 (464)
5 KOG2516 Protein involved in do 100.0 2.6E-48 5.6E-53 397.6 22.2 358 58-435 11-383 (517)
6 KOG4123 Putative alpha 1,2 man 100.0 7.2E-35 1.6E-39 300.6 23.2 304 46-364 8-345 (550)
7 TIGR03663 conserved hypothetic 99.2 4.2E-08 9.1E-13 107.2 31.9 304 47-370 6-346 (439)
8 PRK13279 arnT 4-amino-4-deoxy- 99.1 8.3E-08 1.8E-12 107.2 28.2 292 58-368 20-337 (552)
9 COG1807 ArnT 4-amino-4-deoxy-L 98.0 0.013 2.9E-07 65.8 31.3 149 65-221 30-186 (535)
10 PF09852 DUF2079: Predicted me 97.5 0.037 8.1E-07 61.0 25.7 101 130-231 63-165 (449)
11 TIGR03766 conserved hypothetic 97.3 0.086 1.9E-06 58.7 25.3 170 46-230 69-252 (483)
12 PF13231 PMT_2: Dolichyl-phosp 97.3 0.012 2.6E-07 54.1 15.5 115 112-231 11-132 (159)
13 PF09913 DUF2142: Predicted me 96.8 0.12 2.6E-06 55.7 19.6 77 114-196 109-185 (389)
14 PF04188 Mannosyl_trans2: Mann 95.9 0.23 4.9E-06 54.8 16.1 161 137-302 123-307 (443)
15 COG5542 Predicted integral mem 95.5 0.81 1.7E-05 49.3 17.3 169 127-299 117-302 (420)
16 PF09586 YfhO: Bacterial membr 92.0 33 0.00071 40.9 27.8 26 345-370 338-363 (843)
17 PF10131 PTPS_related: 6-pyruv 91.5 32 0.00069 39.8 24.9 23 345-367 257-279 (616)
18 COG4745 Predicted membrane-bou 90.6 30 0.00064 38.2 19.3 130 50-196 23-153 (556)
19 COG1287 Uncharacterized membra 90.5 12 0.00027 44.3 18.2 102 65-169 48-154 (773)
20 PF02366 PMT: Dolichyl-phospha 90.1 8.4 0.00018 38.5 14.4 71 126-196 82-153 (245)
21 PF09594 DUF2029: Protein of u 90.1 20 0.00043 35.1 21.3 124 101-237 1-130 (241)
22 PLN02841 GPI mannosyltransfera 89.1 13 0.00029 40.9 15.6 163 47-228 10-184 (440)
23 COG1928 PMT1 Dolichyl-phosphat 86.9 43 0.00094 38.9 18.5 141 47-196 29-180 (699)
24 PF04922 DIE2_ALG10: DIE2/ALG1 85.3 19 0.00041 39.0 14.2 142 68-220 9-155 (379)
25 TIGR03459 crt_membr carotene b 83.3 82 0.0018 35.1 20.2 110 115-228 155-265 (470)
26 PF11028 DUF2723: Protein of u 82.0 28 0.00061 33.7 12.5 46 107-154 23-68 (178)
27 PF14897 EpsG: EpsG family 78.7 25 0.00054 36.2 11.9 49 174-224 109-157 (330)
28 KOG3893 Mannosyltransferase [C 74.3 72 0.0016 33.8 13.2 150 44-211 20-181 (405)
29 KOG3359 Dolichyl-phosphate-man 73.1 2E+02 0.0043 33.9 19.0 71 125-196 118-190 (723)
30 KOG2647 Predicted Dolichyl-pho 67.3 77 0.0017 34.7 12.1 75 136-211 135-210 (444)
31 PF11847 DUF3367: Domain of un 65.2 2.1E+02 0.0045 33.5 15.7 87 104-194 55-143 (680)
32 PF05208 ALG3: ALG3 protein; 61.7 2.4E+02 0.0052 30.6 14.9 81 155-237 104-187 (368)
33 KOG2575 Glucosyltransferase - 59.6 2.7E+02 0.0059 30.6 28.7 181 47-230 35-243 (510)
34 KOG2762 Mannosyltransferase [C 58.4 1.4E+02 0.003 32.2 11.7 75 155-231 132-207 (429)
35 PF02516 STT3: Oligosaccharyl 51.9 81 0.0017 34.7 9.7 119 49-169 11-137 (483)
36 KOG2292 Oligosaccharyltransfer 49.7 1.4E+02 0.0031 33.8 10.6 141 51-196 32-188 (751)
37 PF06728 PIG-U: GPI transamida 49.3 3.7E+02 0.0081 29.0 23.3 73 156-229 122-194 (382)
38 KOG2552 Major facilitator supe 44.7 3.1E+02 0.0067 29.7 11.9 73 155-228 144-216 (388)
39 PF03155 Alg6_Alg8: ALG6, ALG8 33.9 7.2E+02 0.016 27.9 22.7 77 154-231 132-209 (469)
40 PF05007 Mannosyl_trans: Manno 33.4 3E+02 0.0066 28.3 9.6 54 174-228 2-55 (259)
41 COG5650 Predicted integral mem 33.3 1.7E+02 0.0036 33.1 8.2 151 129-290 174-334 (536)
42 COG5305 Predicted membrane pro 29.6 9.1E+02 0.02 27.7 17.2 71 126-196 116-186 (552)
43 PRK13375 pimE mannosyltransfer 26.2 9.1E+02 0.02 26.6 18.7 58 180-246 156-214 (409)
44 PF06123 CreD: Inner membrane 23.2 8.2E+02 0.018 27.1 11.3 22 153-174 332-353 (430)
45 PRK11715 inner membrane protei 22.7 7.8E+02 0.017 27.3 11.1 23 153-175 338-360 (436)
No 1
>KOG2515 consensus Mannosyltransferase [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-139 Score=1077.02 Aligned_cols=528 Identities=45% Similarity=0.786 Sum_probs=472.8
Q ss_pred cccccCChHHHHHHHHHHHHHHhhhcCCCCcccccccHHHHHHHhhhcCcccccccCCCCCchhHHHHHHHHHHHHHHHh
Q 008307 38 EEEKSLGWFVPVFALGMLRYMSATTNIIHDCDEVFNYWEPLHYLLYKSGFQTWEYSSEFALRSYLYILFHELVGRPASWL 117 (570)
Q Consensus 38 ~~~~~~~~~~~~~~ll~~R~~~al~~~~~~~DE~fq~~Epah~lv~G~G~~TWE~~p~~~iRS~~~p~l~a~~~~~~~~~ 117 (570)
++...+++.++|++++..|+++|.++.|.||||+||||||+|++++|+|+|||||||+|+||||+|+++|++++++++++
T Consensus 7 gn~~~~s~~~~Fk~lls~Rl~sA~~~iI~DCDEvfNYWEPLHyllyG~GfQTWEYSP~yaiRSy~Yillh~~pg~~~a~~ 86 (568)
T KOG2515|consen 7 GNCWAVSFSTAFKLLLSLRLCSATFSIISDCDEVFNYWEPLHYLLYGEGFQTWEYSPEYAIRSYAYILLHYVPGYFVAKL 86 (568)
T ss_pred CCccceeeHHHHHHHHHHHHHHHHHHhhhcchhhhhcchhhhhHhhcccccceeeCchhHHHHHHHHHHHHcchHHHHHh
Confidence 35666899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHHHhcc
Q 008307 118 FAEDKVRVFYAVRLFLGLLSVTTDAVLVVALSRKYGRRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFFLLE 197 (570)
Q Consensus 118 l~~~~~~~~~~~Rl~lal~s~~~d~~~~~~~~~~~g~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~l~~ 197 (570)
+|.++..+||++|+++|++|+++|.+++++++|.+|.++|+.+++++++|.|||++||++||+||+|+++.+|++.|+.+
T Consensus 87 fg~~ki~vFy~vR~~Lg~fsai~E~~l~~ai~~kf~~~ia~~~i~f~~fssGmF~aStafLPSSF~M~~~~~al~a~l~~ 166 (568)
T KOG2515|consen 87 FGLSKILVFYFVRLCLGFFSAIMETYLYKAICRKFGLAIARIWIIFLLFSSGMFHASTAFLPSSFAMYLTVLALGAWLTE 166 (568)
T ss_pred cCCCceEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeechhcchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhh
Q 008307 198 KYAMAVAVSAAGVILGWPFSILAFLPVVFYSLAR--RFKQ-AFLAGAATSVTLLALSVFVDYQYYRRWTSSVLNLVVYNV 274 (570)
Q Consensus 198 ~~~~ai~~~~la~i~~~P~a~~l~~Pl~l~~l~~--~~~~-~l~~~i~~~l~~l~~~v~iDs~fyg~~~~~~lN~~~yNv 274 (570)
|+..+++..++|+++||||++++++|+++.++.. ++|. ++.+...++++.++.++++||+||||++++|||++.|||
T Consensus 167 n~~~av~~~a~gailGWPFsa~l~lPi~~~lll~k~r~k~~F~~~~l~~~~~~~v~~i~~Ds~yygkl~~a~lNIv~YNV 246 (568)
T KOG2515|consen 167 NYTKAVAYVAIGAILGWPFSALLGLPILLELLLLKHRFKSTFITWFLCILILLLVPVIVTDSYYYGKLTFAPLNIVLYNV 246 (568)
T ss_pred hhHHHHHHHHHHHHhccHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHhccceEEEeehhhccceeeeeeeEEEee
Confidence 9999999999999999999999999977776553 6776 455566666666677899999999999999999999999
Q ss_pred cCCCCCccccccchhHHHHhhhhhhhHHHHHHHHHHHHH---hh-hhcccCc-chhHHHHHHHHHHHHHhcCCCccccee
Q 008307 275 VGGGESHLYGIEGPLYYLRNAFNNFNFGFVLALLFVGIL---PI-ARKKYAP-GLVVVVSPVYIWLLFMSMQPHKEERFL 349 (570)
Q Consensus 275 ~~~~gs~~yGt~Pw~~Y~~~~l~n~~l~~~lall~~~~~---~~-~~~~~~~-~~~~~l~p~~~~l~v~Sl~pHKE~RFl 349 (570)
++++||++||||||+||+.|+++|||+.+++|++..+++ .. .+.+.++ ....++.|+++|+++|+.|||||||||
T Consensus 247 ~~~~gP~iyGtEP~~yYi~NlflNfNi~~~lA~~~~p~~li~~l~~w~~~dsl~~p~~isp~yiWl~iF~~QPHKEERFL 326 (568)
T KOG2515|consen 247 LTGHGPNIYGTEPWYYYIINLFLNFNIVFLLAMLLGPFLLIYFLRVWPKWDSLALPVVISPMYIWLAIFFIQPHKEERFL 326 (568)
T ss_pred ccCCCCCccccCchHHHHHhhhccccHHHHHHHHhchHHHHHHHhhhhhhhccCCceehhHHHHHHHHHhcCccchhhhh
Confidence 999999999999999999999999999988777632221 11 1222222 122356699999999999999999999
Q ss_pred cchhhHHHHHHHhhhhhcccccccCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHccccCCC
Q 008307 350 YPIYPLICVAASAVIESFPDIFRDKYDPNANFVMVTTAKVLRPFVLGLILCASHSRTFSLVNGYAAPIEVYKILQHHDDA 429 (570)
Q Consensus 350 ~P~~Pll~l~AA~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ls~sr~~~l~~~Y~ap~~v~~~L~~~~~~ 429 (570)
||+||+||++||++++..++++.++.+.+. +......+.++++++++++++|+||++|+++||+||++||++++++++.
T Consensus 327 yPIYPlI~l~aaiald~~~~lf~~k~s~~~-~~~~~~~~~i~l~v~~~~~~ls~SR~~Al~nnY~aPl~vY~~l~~~~t~ 405 (568)
T KOG2515|consen 327 YPIYPLICLSAAIALDAVLRLFLRKLSSRE-SHYVTLSKFIALLVLLIIACLSMSRIVALVNNYHAPLEVYPELSSLNTD 405 (568)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcC
Confidence 999999999999999999887755433221 1122345667778889999999999999999999999999999987544
Q ss_pred C---CCccccccccceecCCCcccC-CCCceeEEeccCCCCCCccccccC---CCCCcCCCCCccccCccccccccCCCC
Q 008307 430 G---PGSVVCVGSEWHRYPSSFFIP-NYVGEVRWLDDGFRGLLPLPFNST---LGGTSAAPSYFNNENKASDQQFLQDVE 502 (570)
Q Consensus 430 ~---~~~~vC~g~ewyrfPssfflp-~~~~~l~Fl~s~f~G~lP~~f~~~---~~~t~~~p~~~Nd~N~ee~~~y~~~~~ 502 (570)
+ +++|||+||||||||||||+| +| .||||+||||||+||+||+|+ .++|+.+|++|||+|+||++||+ |+|
T Consensus 406 ~~~~~~~nVCvGkEWhRfPSSFflP~dn-~rlrFikSeFrGlLP~pF~es~s~~~~tr~iP~~mNn~Nqee~~rY~-di~ 483 (568)
T KOG2515|consen 406 GTKAPPVNVCVGKEWHRFPSSFFLPHDN-SRLRFIKSEFRGLLPGPFPESGSIFEGTRTIPPYMNNKNQEEESRYW-DIE 483 (568)
T ss_pred CCCCCceeeeeCcccccCCccccccccc-ceEEeeccccCccCCCCcccccccccceeeCCcccccccccCcceee-ccc
Confidence 3 346999999999999999999 66 999999999999999999999 78999999999999999999999 999
Q ss_pred CccEEEEccCC--C--C-CCCCCCCCCCceEeeeeccccCCCCCcceeeeEecccccccccc---cceEEEE-ec
Q 008307 503 ACTFLVELQLN--R--P-YPSRGSDLSKWEPIAALPYLDREFSPPLYRSFFIPYLWQQRNVF---GLYKLFR-RI 568 (570)
Q Consensus 503 ~Cdy~vd~~~~--~--~-~~~~~~~~~~W~~v~~~~fld~~~s~~~~R~~yiP~~~~~~~~~---~~y~ll~-~~ 568 (570)
+|||+||.+.+ + + ||+|..++++|+++++.||+|+++|+..+|+||+|+.+++.++| ++|.+|| |+
T Consensus 484 ~CdyliD~~~~~s~~~~~~p~y~~~~~~W~~ia~~pFld~e~s~~~~RaFyvPf~~d~~~~y~~~~~y~~Lk~R~ 558 (568)
T KOG2515|consen 484 RCDYLIDIVLDISRTTPFEPNYSSDSKNWIKIAVAPFLDGENSPKLGRAFYVPFLIDNIGQYVLPGDYSVLKVRK 558 (568)
T ss_pred cccEEEEeccccccccCCCcccccccccchhhhcceecchhcccccceeeecceeeccceEEEeeccceeeeecc
Confidence 99999996654 3 2 89999999999999999999999999999999999999999999 9999999 54
No 2
>PLN02816 mannosyltransferase
Probab=100.00 E-value=9.2e-79 Score=668.79 Aligned_cols=434 Identities=17% Similarity=0.216 Sum_probs=337.8
Q ss_pred hHHHHHHHHHHHHHHhhhcC-CCCcccccccHHHHHHHhhhcCcccccccCCCCCchhHHHHHHHHHHHHHHHhhCCC-c
Q 008307 45 WFVPVFALGMLRYMSATTNI-IHDCDEVFNYWEPLHYLLYKSGFQTWEYSSEFALRSYLYILFHELVGRPASWLFAED-K 122 (570)
Q Consensus 45 ~~~~~~~ll~~R~~~al~~~-~~~~DE~fq~~Epah~lv~G~G~~TWE~~p~~~iRS~~~p~l~a~~~~~~~~~l~~~-~ 122 (570)
-..++.+++++|+++|++.+ ++||||+||+|||||+++||+|.+||||+| ++||++||++++++++++.. ++.+ +
T Consensus 38 ~~~~~~~~~~~R~~~al~~~t~f~pDE~fQslE~ah~~vfG~G~lTWEw~~--~lRS~~~Pll~a~~~~~~~~-l~~~~~ 114 (546)
T PLN02816 38 PRRIFLFCLAFRVVNALLIQTYFNPDEHWQSLEVAHRTIFGYGYMTWEWKR--GIRSYLHPMLFAFLYKLLQV-TGLDTP 114 (546)
T ss_pred cHHHHHHHHHHHHHHHHHccccCCCCchhhhHHHHHHHHhCCcccceecCC--CccchhHHHHHHHHHHHHHH-hcCCcH
Confidence 34678888999999999888 999999999999999999999999999986 89999999999998765554 4655 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHHHhc------
Q 008307 123 VRVFYAVRLFLGLLSVTTDAVLVVALSRKYGRRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFFLL------ 196 (570)
Q Consensus 123 ~~~~~~~Rl~lal~s~~~d~~~~~~~~~~~g~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~l~------ 196 (570)
..++++||+++|++++++|+++++++++.+|.+++.|+++++++||+++|+++||||||+|+.++++|+++|+.
T Consensus 115 ~~~~~~pRl~~al~sal~D~~l~kl~~~~~g~~~A~~~L~~sl~swf~~y~~sRTfSNslEt~Lt~lAL~~w~~~~~~~~ 194 (546)
T PLN02816 115 YIMIKAPRLMQSIFSAIGDLYLYKLSDALYGGNVATWSLFCQMANWFIFFCLNRTFSNCLETVLTIMGLYYWPCIRDSSI 194 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHHHHHhhccccccc
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred ---cchhHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhh
Q 008307 197 ---EKYAMAVAVSAAGVILGWPFSILAFLPVVFYSLAR---RFKQAFLAGAATSVTLLALSVFVDYQYYRRWTSSVLNLV 270 (570)
Q Consensus 197 ---~~~~~ai~~~~la~i~~~P~a~~l~~Pl~l~~l~~---~~~~~l~~~i~~~l~~l~~~v~iDs~fyg~~~~~~lN~~ 270 (570)
.+...+++++++++++ |||++++|+|+++..+++ +++.++..++.++++++++++.||++|||+|++||+|++
T Consensus 195 ~~~~~~~~~L~la~la~~i-RPt~ailwl~l~l~~l~~~~~~~~~l~~~~l~~g~~~l~~s~~IDs~fyg~~~~p~~nfl 273 (546)
T PLN02816 195 DYPVNRKWGLVIAALACAI-RPTSAVIWLYVGMLELFLTPNKVKFIILEVIPIGSLVLGFTCLLDRLMYGSWVIVPLNFL 273 (546)
T ss_pred cccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhCCcccchhhhe
Confidence 1344567888888888 799999999999988874 344445566777778888889999999999999999999
Q ss_pred hhhhcCCCCCccccccchhHHHHhhhhhhhHHHHHHHHHHHHHhhhhcccCcchhHHHHHHHHH-HHHHhcCCCccccee
Q 008307 271 VYNVVGGGESHLYGIEGPLYYLRNAFNNFNFGFVLALLFVGILPIARKKYAPGLVVVVSPVYIW-LLFMSMQPHKEERFL 349 (570)
Q Consensus 271 ~yNv~~~~gs~~yGt~Pw~~Y~~~~l~n~~l~~~lall~~~~~~~~~~~~~~~~~~~l~p~~~~-l~v~Sl~pHKE~RFl 349 (570)
+|||++|+ |++||+||||||++|++|+++.. .+.+.+.++...+.. .+.+..+| +++||++||||+|||
T Consensus 274 ~FNv~~~~-ss~YGt~PWh~Yf~~glP~~l~~----~lpf~l~gl~~~~~~-----~l~~~~l~~i~i~S~l~HKE~RFI 343 (546)
T PLN02816 274 KFNFLSSG-GDYYGTHPWHWYFTQGFLVMLFT----FTPFSIAGIIKSKNQ-----KLSALILWVLAIYSILGHKEFRFV 343 (546)
T ss_pred eEeeccCc-ccccccCCcHHHHHHHHHHHHHH----HHHHHHHHHHHhcch-----hHHHHHHHHHHHHHcCCcchHHhH
Confidence 99999998 88999999999999999987652 122233444333222 12345556 999999999999999
Q ss_pred cchhhHHHHHHHhhhhhcccccccCCCC------CCc-hhhhhhhhhhhH-HHHHHHHHHHHHHHHHHhhcCCchhHHHH
Q 008307 350 YPIYPLICVAASAVIESFPDIFRDKYDP------NAN-FVMVTTAKVLRP-FVLGLILCASHSRTFSLVNGYAAPIEVYK 421 (570)
Q Consensus 350 ~P~~Pll~l~AA~~l~~l~~~~~~~~~~------~~~-~~~~~~~~~~~~-~~l~~~~~ls~sr~~~l~~~Y~ap~~v~~ 421 (570)
+|++|++++.||++++.+........+. ..+ ... +..+.++. +++.+.+++.++-+++++|| +||++||+
T Consensus 344 ~P~lPll~i~aa~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ll~~ni~~a~y~s~~Hq-~G~i~vm~ 421 (546)
T PLN02816 344 LPVLPIALIFSGYAFAQMEVSGSSSSSSVTKKKQVPRQNHT-KWSPKLRLSVYFLLATNIPMALYMSLFHQ-RGTEDAMN 421 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 9999999999999999875321111000 000 000 01112222 22344557778889999999 88999999
Q ss_pred HccccCCCCCC-----ccccccccceecCCCcccCCCCceeEEeccCCCCCCccccccCCCCCcCCCCCccccCcccccc
Q 008307 422 ILQHHDDAGPG-----SVVCVGSEWHRYPSSFFIPNYVGEVRWLDDGFRGLLPLPFNSTLGGTSAAPSYFNNENKASDQQ 496 (570)
Q Consensus 422 ~L~~~~~~~~~-----~~vC~g~ewyrfPssfflp~~~~~l~Fl~s~f~G~lP~~f~~~~~~t~~~p~~~Nd~N~ee~~~ 496 (570)
.|+++.+.++. ...||++|||+ |+|+| ++|+|++||.+.. ++..||+ |+-.+||..
T Consensus 422 ~l~~~~~~~~~~sv~fLmpCHsTP~yS-----hlH~~-i~~~fL~C~P~~~-~~~~DEa------------D~Fy~~P~~ 482 (546)
T PLN02816 422 YLSDEAYKGRVKSILFLMPCHSTPYYS-----TLHRN-IPMQFLDCTPSAE-KGELDES------------DQFLVNPLG 482 (546)
T ss_pred HHHhhhhccCcceEEEEecccCCCCee-----eeccC-CCccccccCCCCC-CCCCChH------------HHHHhCHHH
Confidence 99976532222 23599999999 88988 9999999998732 3444443 333444444
Q ss_pred ccCCC-----CCccEEEEccCC
Q 008307 497 FLQDV-----EACTFLVELQLN 513 (570)
Q Consensus 497 y~~~~-----~~Cdy~vd~~~~ 513 (570)
++++. +.-||+|-+|.-
T Consensus 483 fl~~~~~~~~~~P~~lV~F~~l 504 (546)
T PLN02816 483 FASELARNWSEPPSHIVLFASE 504 (546)
T ss_pred HHHHHhcccCCCCCEEEEehhh
Confidence 43111 246888888753
No 3
>PF03901 Glyco_transf_22: Alg9-like mannosyltransferase family; InterPro: IPR005599 Members of this family are glycosylphosphatidylinositol mannosyltransferase enzymes 2.4.1.- from EC [, ]. At least some members are localised in endoplasmic reticulum and involved in GPI anchor biosynthesis [, ]. In yeast the SMP3 (YOR149C) has been implemented in plasmid stability [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0006506 GPI anchor biosynthetic process, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=100.00 E-value=1.6e-73 Score=616.05 Aligned_cols=389 Identities=30% Similarity=0.484 Sum_probs=318.4
Q ss_pred HHHHHHHHHHHHhhhcCC-CCcccccccHHHHHHHhhhcCcccccccCCCCCchhHHHHHHHHHHHHHHHhhCCCchHHH
Q 008307 48 PVFALGMLRYMSATTNII-HDCDEVFNYWEPLHYLLYKSGFQTWEYSSEFALRSYLYILFHELVGRPASWLFAEDKVRVF 126 (570)
Q Consensus 48 ~~~~ll~~R~~~al~~~~-~~~DE~fq~~Epah~lv~G~G~~TWE~~p~~~iRS~~~p~l~a~~~~~~~~~l~~~~~~~~ 126 (570)
++.+++++|+.+|+++++ +||||+||++||+|++++|+|.+||||+|++++||+++|++++++++.+..+.+.++...+
T Consensus 2 ~~~~ll~~R~~~a~~~~~~f~pDE~fq~~E~ah~~~~g~g~~tWE~~~~~~iRS~~~p~i~~~~~~~~~~~~~~~~~~~~ 81 (418)
T PF03901_consen 2 LFLLLLAFRLLNALFPQTSFHPDEYFQSLEPAHRLVFGYGYLTWEWSPFPGIRSWLFPLIFAIPYKLLARLGLDSPWAVF 81 (418)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCcccccHHhhhhhhcCccchhhhhccCCCCCChHHHHHHHHHHHHHHHHhhccchhHH
Confidence 577889999999999994 4999999999999999999999999999999999999999999998888876666777889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHHHhc----------
Q 008307 127 YAVRLFLGLLSVTTDAVLVVALSRKYGRRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFFLL---------- 196 (570)
Q Consensus 127 ~~~Rl~lal~s~~~d~~~~~~~~~~~g~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~l~---------- 196 (570)
+++|+++|++|+.+|+++++.+++.+|.+++.++++++++||+++++++||+|||+||.++++|++++++
T Consensus 82 ~~~Rl~~~~~s~~~d~~~~~~~~~~~~~~~a~~~l~l~~~s~~~~~~~~Rtlsns~e~~l~~~al~~~~~~~~~~~~~~~ 161 (418)
T PF03901_consen 82 YAPRLVLALLSALSDYYLYRLVKRLFGSSVALWALLLSLFSWFMFYYSSRTLSNSFETILVLLALYLWLRSLSRSNSSSS 161 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhHHHhhhHHHHhhcccCccHHHHHHHHHHHHHHHHhhccCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -cchhHHH-HHHHHHHHhhhhhHHHhHHHHHHHHHHH---H-HH----HHHHHHHHHHHHHHHHHHHHHhhhccccchhh
Q 008307 197 -EKYAMAV-AVSAAGVILGWPFSILAFLPVVFYSLAR---R-FK----QAFLAGAATSVTLLALSVFVDYQYYRRWTSSV 266 (570)
Q Consensus 197 -~~~~~ai-~~~~la~i~~~P~a~~l~~Pl~l~~l~~---~-~~----~~l~~~i~~~l~~l~~~v~iDs~fyg~~~~~~ 266 (570)
+++..++ +++++|+ +.||+++++++|+++.++.+ + .. ..+..++.++++++++++.+||+||||+++||
T Consensus 162 ~~~~~~~~~~l~~~~~-~~Rpt~~~~~~pl~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~iDs~~yg~~~~~~ 240 (418)
T PF03901_consen 162 SKRYLLAIGLLAGLAV-FFRPTSALFWLPLGLYLLWRLIGRRWKSFLFLLILIGLLSALLVLAISILIDSYFYGKWVFPP 240 (418)
T ss_pred ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch
Confidence 2333444 4445555 56999999999999988854 1 11 22345556666777889999999999999999
Q ss_pred hhhhhhhhcCCCCCccccccchhHHHHhhhhhhhHHHHHHHHHHHHHhhhhcccCcchhHHHHHHHHHHHHHhcCCCccc
Q 008307 267 LNLVVYNVVGGGESHLYGIEGPLYYLRNAFNNFNFGFVLALLFVGILPIARKKYAPGLVVVVSPVYIWLLFMSMQPHKEE 346 (570)
Q Consensus 267 lN~~~yNv~~~~gs~~yGt~Pw~~Y~~~~l~n~~l~~~lall~~~~~~~~~~~~~~~~~~~l~p~~~~l~v~Sl~pHKE~ 346 (570)
+|+++||+++|+ |++||+||||||+++++|+++....+.++. +.....+++...+...+..+++.|++++|++||||+
T Consensus 241 ~n~~~~Nv~~~~-s~~yG~~p~~~Y~~~~lp~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~l~~~S~~~HKE~ 318 (418)
T PF03901_consen 241 WNFFKFNVLEGN-SSFYGTHPWHWYFTQGLPNLLGPFLPFLLF-GLFILRSRKYKRRLSILLLPILFWLAVYSLLPHKEF 318 (418)
T ss_pred hhheeeeecCCc-hhhhhhcceEEEEeecchhHhHHHHHHHHH-HHHHHhhhhhhhHHHHHHHHHHHHHHHhcccCCccc
Confidence 999999999998 899999999999999999987654322211 122221122222344567788899999999999999
Q ss_pred ceecchhhHHHHHHHhhhhhcccccccCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcCCchh--HHHHHcc
Q 008307 347 RFLYPIYPLICVAASAVIESFPDIFRDKYDPNANFVMVTTAKVLRPFVLGLILCASHSRTFSLVNGYAAPI--EVYKILQ 424 (570)
Q Consensus 347 RFl~P~~Pll~l~AA~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ls~sr~~~l~~~Y~ap~--~v~~~L~ 424 (570)
|||+|++|++++.||.+++.+.+ .++++ + +......+.+..+++++++++++|||++|. ++|++++
T Consensus 319 RFi~P~~Pl~~l~aa~~~~~~~~---~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~h~~g~~~~~~~~~~l~ 386 (418)
T PF03901_consen 319 RFIYPLLPLLLLFAAIGLSRLRR---NSWKR------R---RRIVLLVLLIVFNLILSLYFGLIHQYGAPPALEVMNQLR 386 (418)
T ss_pred eehHHHHHHHHHHHHHHHHHHhh---hhhHH------H---HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 99999999999999999998851 11110 1 101234556777889999999999987763 5688877
Q ss_pred ccCC-----CCCCccccccccceecCCCcccC
Q 008307 425 HHDD-----AGPGSVVCVGSEWHRYPSSFFIP 451 (570)
Q Consensus 425 ~~~~-----~~~~~~vC~g~ewyrfPssfflp 451 (570)
+... .+++.++|+++||||+|+++|+|
T Consensus 387 ~~~~~~~~~~~~~~~v~~~~~ch~~P~~~~lh 418 (418)
T PF03901_consen 387 NEPQQNRDSFNSPSSVCFLMPCHSTPSYSFLH 418 (418)
T ss_pred hccccccccCCCCcEEEEeCCCCCCCCcccCC
Confidence 6541 24567899999999999999997
No 4
>KOG1771 consensus GPI-alpha-mannosyltransferase III (GPI10/PIG-B) involved in glycosylphosphatidylinositol anchor biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-66 Score=527.01 Aligned_cols=394 Identities=22% Similarity=0.305 Sum_probs=311.0
Q ss_pred HHHHHHHHHHHHhhhcC-CCCcccccccHHHHHHHhhhcCcccccccCCCCCchhHHHHHHHHHHHHHHHhhCCCchHHH
Q 008307 48 PVFALGMLRYMSATTNI-IHDCDEVFNYWEPLHYLLYKSGFQTWEYSSEFALRSYLYILFHELVGRPASWLFAEDKVRVF 126 (570)
Q Consensus 48 ~~~~ll~~R~~~al~~~-~~~~DE~fq~~Epah~lv~G~G~~TWE~~p~~~iRS~~~p~l~a~~~~~~~~~l~~~~~~~~ 126 (570)
.+..++++|++||++.+ +++|||+||++||||..+||||+.||||. .+||||+||++++.+++ +..++|+|++.++
T Consensus 6 ~~lf~LafR~~na~lvqT~f~pDE~wQsLEvaH~~~F~YGylTWEW~--~giRSyl~Plifa~lYk-ll~ll~lds~~~~ 82 (464)
T KOG1771|consen 6 FWLFILAFRVLNALLVQTFFQPDEFWQSLEVAHHFIFGYGYLTWEWT--SGIRSYLHPLIFAALYK-LLQLLGLDSYYLL 82 (464)
T ss_pred ehHHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHhhhccceEEEehH--hhHHHHHHHHHHHHHHH-HHHHhccCceeEE
Confidence 34556899999999999 99999999999999999999999999995 69999999999999955 5567899887544
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHHHhc-c-------
Q 008307 127 -YAVRLFLGLLSVTTDAVLVVALSRKYGRRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFFLL-E------- 197 (570)
Q Consensus 127 -~~~Rl~lal~s~~~d~~~~~~~~~~~g~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~l~-~------- 197 (570)
.+||. | ++|++++++++|.++++.+||+.||+||.|+.+|+++|.. +
T Consensus 83 i~aPr~--------------~----------~~w~lf~~l~s~fn~y~~trtl~nt~etvLT~ialyY~p~~g~~si~~~ 138 (464)
T KOG1771|consen 83 INAPRY--------------R----------AKWALFCSLVSWFNAYVGTRTLSNTLETVLTSIALYYFPWYGKYSISSS 138 (464)
T ss_pred EEcchh--------------h----------hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhheeccccccccccch
Confidence 78991 1 7899999999999999999999999999999999999986 1
Q ss_pred chhHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHH--H-HHH-HHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhh
Q 008307 198 KYAMAVAVSAAGVILGWPFSILAFLPVVFYSLAR--R-FKQ-AFLAGAATSVTLLALSVFVDYQYYRRWTSSVLNLVVYN 273 (570)
Q Consensus 198 ~~~~ai~~~~la~i~~~P~a~~l~~Pl~l~~l~~--~-~~~-~l~~~i~~~l~~l~~~v~iDs~fyg~~~~~~lN~~~yN 273 (570)
...+....++++|++ ||+|+++|+|..+.++.+ + ... +....+..+.++++..+++|.++||++++++.|+++||
T Consensus 139 ~~~~~l~vaalac~i-RPta~lIW~~~l~~~l~~s~~~vldlI~~s~v~~gflvlg~g~liDr~~yg~~~f~~~~FlkFN 217 (464)
T KOG1771|consen 139 SSTKYLSVAALACFI-RPTAALIWLPPLLLHLVASPQPVLDLILFSFVLIGFLVLGLGILIDRIFYGQWVFPPFNFLKFN 217 (464)
T ss_pred hhHHHHHHHHHHHHh-cccceeEehhHHHHHHhcCCccchhHHhhHHHHHHHHHHhHHHHHHHHHhcceeecchhhEEEe
Confidence 234556778889987 799999999998888776 2 222 33356777788899999999999999999999999999
Q ss_pred hcCCCCCccccccchhHHHHhhhhhhhHHHHHHHHHH-HHHhhhhcccC-cchhHHHHHHHHH-HHHHhcCCCcccceec
Q 008307 274 VVGGGESHLYGIEGPLYYLRNAFNNFNFGFVLALLFV-GILPIARKKYA-PGLVVVVSPVYIW-LLFMSMQPHKEERFLY 350 (570)
Q Consensus 274 v~~~~gs~~yGt~Pw~~Y~~~~l~n~~l~~~lall~~-~~~~~~~~~~~-~~~~~~l~p~~~~-l~v~Sl~pHKE~RFl~ 350 (570)
|.+|. |+.||+|||||||++++|- +++..+| .+.|+...+++ +.+..++ ..+.| +++||++||||.||++
T Consensus 218 v~~~l-ssfYG~hPWHwYfsqglPv-----VLg~~~pffI~Gl~~~~~~rp~~l~ll-~tIl~~L~VySlL~HKEfRFv~ 290 (464)
T KOG1771|consen 218 VTQGL-SSFYGVHPWHWYFSQGLPV-----VLGTFLPFFIFGLLLPNKKRPSLLQLL-ATILLTLLVYSLLPHKEFRFVL 290 (464)
T ss_pred eecCc-ccccCCCceeeeeccccHH-----HHhccchHHHHHhhccccCCcchhhhH-HHHHHHHHHHHhcCccceeeee
Confidence 99997 7899999999999999863 4555444 34555432222 3233333 34566 8999999999999999
Q ss_pred chhhHHHHHHHhhhhhcccccccCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHccccCCCC
Q 008307 351 PIYPLICVAASAVIESFPDIFRDKYDPNANFVMVTTAKVLRPFVLGLILCASHSRTFSLVNGYAAPIEVYKILQHHDDAG 430 (570)
Q Consensus 351 P~~Pll~l~AA~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ls~sr~~~l~~~Y~ap~~v~~~L~~~~~~~ 430 (570)
|++|++++.|+.+++++. +|++.. +.+++.+.+++.++-+++.+|| +|++|+|+.+|++...+
T Consensus 291 PilPl~li~ag~afs~l~-----~Wk~~~-----------ral~~l~~~ni~iAlyls~fHQ-~Gs~evM~~lh~ea~~~ 353 (464)
T KOG1771|consen 291 PILPLLLIFAGYAFSSLK-----KWKRSA-----------RALALLIAINIFIALYLSRFHQ-RGTIEVMPLLHEEAEIE 353 (464)
T ss_pred chHHHHHHHHhHHHHhhh-----hhcchh-----------hhhHHHHHhhHHHHHHHHHHhh-cCccchhhhcchhhccc
Confidence 999999999999999773 355431 2244556678888889999999 88999999999886333
Q ss_pred CC--ccccccccceecCCCcccCCCCceeEEeccCCCCCCccccccCCCCCcCCCCCccccCccccccccC-----CCCC
Q 008307 431 PG--SVVCVGSEWHRYPSSFFIPNYVGEVRWLDDGFRGLLPLPFNSTLGGTSAAPSYFNNENKASDQQFLQ-----DVEA 503 (570)
Q Consensus 431 ~~--~~vC~g~ewyrfPssfflp~~~~~l~Fl~s~f~G~lP~~f~~~~~~t~~~p~~~Nd~N~ee~~~y~~-----~~~~ 503 (570)
+. .-.||++|||+ ++|+| ..|+|++|+.+ .-+++-||+ |+-.|+|..+.. +-|.
T Consensus 354 silflmPCHsTPyyS-----hiH~~-~~m~fltC~P~-~~k~e~des------------D~fy~np~~f~~~~~~~~~e~ 414 (464)
T KOG1771|consen 354 SILFLMPCHSTPYYS-----HIHRP-FPMRFLTCEPF-LEKKELDES------------DRFYENPLTFIHKDDRSIKEW 414 (464)
T ss_pred CeEEEEEccCCcccc-----hhcCc-chhhhccCCCc-cCccccchh------------hhhhhChHhhhhccccCcccC
Confidence 32 23599999999 99999 99999999874 223333332 444444444430 2256
Q ss_pred ccEEEEccC
Q 008307 504 CTFLVELQL 512 (570)
Q Consensus 504 Cdy~vd~~~ 512 (570)
-||+|-+|.
T Consensus 415 Pthlv~F~~ 423 (464)
T KOG1771|consen 415 PTHLVLFEE 423 (464)
T ss_pred CceEEEehh
Confidence 777877764
No 5
>KOG2516 consensus Protein involved in dolichol pathway for N-glycosylation (mannosyltransferase family) [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-48 Score=397.56 Aligned_cols=358 Identities=22% Similarity=0.280 Sum_probs=278.0
Q ss_pred HHhhhcCCCCcccccccHHHHHHHhhh-cCccccccc--CCCCCchhHHHHHHHHHHHHHHHh---hCCCchHHHHHHHH
Q 008307 58 MSATTNIIHDCDEVFNYWEPLHYLLYK-SGFQTWEYS--SEFALRSYLYILFHELVGRPASWL---FAEDKVRVFYAVRL 131 (570)
Q Consensus 58 ~~al~~~~~~~DE~fq~~Epah~lv~G-~G~~TWE~~--p~~~iRS~~~p~l~a~~~~~~~~~---l~~~~~~~~~~~Rl 131 (570)
.+....++++.+|.||.+..++.+.|- .....+||. |+...|++++|...|++..|...+ +..+|.++++++|.
T Consensus 11 ~hli~~PfTKVEESFnlQA~HDil~~~~~~~sqYDHleFPGVVpRTFigplviAvlSsP~~yi~s~~~~~k~~~qlvvR~ 90 (517)
T KOG2516|consen 11 YHLIKAPFTKVEESFNLQAIHDILTYRWDDLSQYDHLEFPGVVPRTFIGPLVIAVLSSPYVYIFSLLVIPKFWVQLVVRG 90 (517)
T ss_pred eeeeecCcchHhhhhhHHHHHHHHHhccchhhhcccccCCCcCccccccceeeeeccccHHHHHHHHhccHHHHHHHHHH
Confidence 345567899999999999888877777 566677777 999999999999999987666543 46789999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhCchhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 008307 132 FLGLLSVTTDAV-LVVALSRKYGRRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFFLLEKYAMAVAVSAAGV 210 (570)
Q Consensus 132 ~lal~s~~~d~~-~~~~~~~~~g~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~l~~~~~~ai~~~~la~ 210 (570)
++|++++.+-.+ +.+.+.|++|..++.|+.++++.|+|..+++||+|||.|+..+++.|+++|+++|+..++.+.++++
T Consensus 91 ~lGl~~~~s~~~~l~~~v~k~fg~~~~~~f~l~~~~qFHlmFYmtRpLpNifaLplv~~al~~~L~~~y~~~I~~s~~a~ 170 (517)
T KOG2516|consen 91 TLGLLNAISFLYKLQCSVSKIFGTEVGTWFILFTCTQFHLMFYMTRPLPNIFALPLVNHALALLLRGRYYGAISLSAFAA 170 (517)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHheeeeecCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHH
Confidence 999999988777 9999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred H-hhhhhHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhcCCCCCcccccc
Q 008307 211 I-LGWPFSILAFLPVVFYSLAR---RFKQAFLAGAATSVTLLALSVFVDYQYYRRWTSSVLNLVVYNVVGGGESHLYGIE 286 (570)
Q Consensus 211 i-~~~P~a~~l~~Pl~l~~l~~---~~~~~l~~~i~~~l~~l~~~v~iDs~fyg~~~~~~lN~~~yNv~~~~gs~~yGt~ 286 (570)
+ +|.+.+++++--+....+.+ .+-+.+..|+.++++++++++.|||+|||+|.||+...+.||++.|+ |+.|||+
T Consensus 171 ivfR~El~lllg~i~L~~~l~~RkVsl~~al~vgi~~~~~~la~si~VDSYFW~~~~wPEgev~~fNvV~nk-Ss~wGts 249 (517)
T KOG2516|consen 171 IVFRSELALLLGCILLPLLLQRRKVSLDGALKVGIPAGLLCLAASILVDSYFWGRWCWPEGEVFLFNVVENK-SSNWGTS 249 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeehHhHHHhccchhhhhheeeeeehhhhhccccCcCcceEEEEeeccc-ccccCCC
Confidence 6 68888888773132333333 24467778899999999999999999999999999999999999999 8899999
Q ss_pred chhHHHHhhhhhhhHHHHHHHHHHHHHhhhhcccCcchhHHHHHHHHHHHHHhcCCCcccceecchhhHHHHHHHhhhhh
Q 008307 287 GPLYYLRNAFNNFNFGFVLALLFVGILPIARKKYAPGLVVVVSPVYIWLLFMSMQPHKEERFLYPIYPLICVAASAVIES 366 (570)
Q Consensus 287 Pw~~Y~~~~l~n~~l~~~lall~~~~~~~~~~~~~~~~~~~l~p~~~~l~v~Sl~pHKE~RFl~P~~Pll~l~AA~~l~~ 366 (570)
|..|||.+.+|... ...++ +..+|+.-. +++..+..+.++++++||++||||+|||+.+.|.+++.||.|++.
T Consensus 250 PflwYFysaLpr~~---~ttlL-lvpig~~~~---~~~~~~vl~sL~fi~lySflpHKElRFIIY~~P~~nl~aA~gca~ 322 (517)
T KOG2516|consen 250 PFLWYFYSALPRLF---LTTLL-LVPIGLVLI---PRLRPLVLVSLFFIFLYSFLPHKELRFIIYAFPWFNLAAAIGCAR 322 (517)
T ss_pred ccHHHHHHHHHHHH---HHHHH-HHhhhhhcc---cCccceeHHHHHHHHHHHhCCcceeEEEEeehHHHHHHHHHHHHH
Confidence 99999999998643 23332 222333211 122234556778899999999999999999999999999999999
Q ss_pred cccccccCCCCCCchhhhhhhhhhhHHHHH-HHHH---HHHHHHHHHhhcCCchhHHHHHccccCCCCCCccc
Q 008307 367 FPDIFRDKYDPNANFVMVTTAKVLRPFVLG-LILC---ASHSRTFSLVNGYAAPIEVYKILQHHDDAGPGSVV 435 (570)
Q Consensus 367 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~---ls~sr~~~l~~~Y~ap~~v~~~L~~~~~~~~~~~v 435 (570)
+..-. .++ +....+.++++. ++++ -+..-+++.+++.+| +++..|++.+.+.++++|
T Consensus 323 l~~n~-------kks---~~~~~l~l~v~~hli~n~~~s~~~LyVs~~nYPGg--~ALtrl~~~~~~~~nvtV 383 (517)
T KOG2516|consen 323 LWNNS-------KKS---KKIFELLLLVIFHLIINFFISSFFLYVSQYNYPGG--LALTRLHRLEANHPNVTV 383 (517)
T ss_pred HHHhh-------hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcH--HHHHHHHHhcCCCCceEE
Confidence 84311 111 112222222221 1222 133345555555555 778999866545554443
No 6
>KOG4123 consensus Putative alpha 1,2 mannosyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.2e-35 Score=300.65 Aligned_cols=304 Identities=18% Similarity=0.187 Sum_probs=221.5
Q ss_pred HHHHHHHHHHHHHHhhhcC--CCCcccccccHHHHHHHhhh-cCcccccccCCCCCchhHHHHHHHHHHHHHHHh---hC
Q 008307 46 FVPVFALGMLRYMSATTNI--IHDCDEVFNYWEPLHYLLYK-SGFQTWEYSSEFALRSYLYILFHELVGRPASWL---FA 119 (570)
Q Consensus 46 ~~~~~~ll~~R~~~al~~~--~~~~DE~fq~~Epah~lv~G-~G~~TWE~~p~~~iRS~~~p~l~a~~~~~~~~~---l~ 119 (570)
+.++..++++|+.-.+..+ |.||||+||+.|++....+| .|..|||+.+..++||+...++..++....... .+
T Consensus 8 r~~y~~ll~lrill~f~pg~sYiHPDEhfQs~Eima~d~fgvk~trpWEF~~k~p~Rsv~Plll~~~P~F~llr~~ce~~ 87 (550)
T KOG4123|consen 8 RIIYTFLLILRILLMFCPGPSYIHPDEHFQSFEIMAMDFFGVKGTRPWEFKSKFPARSVGPLLLMLGPIFLLLRCFCEIN 87 (550)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccChhhhhhhHHHHHHHHhccceecceeecCCCccceehhHHHHhccHHHHHHHHHHhc
Confidence 4567788999988877776 99999999999999999999 689999999999999887555555543222221 23
Q ss_pred -CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHH-HHHHHHhhccceeeecccCchHHHHHHHHHHHHHHhc-
Q 008307 120 -EDKVRVFYAVRLFLGLLSVTTDAVLVVALSRKYGRRLASY-TLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFFLL- 196 (570)
Q Consensus 120 -~~~~~~~~~~Rl~lal~s~~~d~~~~~~~~~~~g~~~a~~-~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~l~- 196 (570)
.+++.....+|+...++|...|..++++++ ..| .++| .+++...||..+.+.|||++||+||.+..+.+-..-+
T Consensus 88 ~~g~yallvfprl~ytlisl~~d~~i~~i~r-l~g--a~rw~allllssSyvtltfqThTFSNSIEtl~f~wtL~lvs~~ 164 (550)
T KOG4123|consen 88 DCGAYALLVFPRLNYTLISLCIDFLIPKIIR-LEG--AARWMALLLLSSSYVTLTFQTHTFSNSIETLAFFWTLLLVSDL 164 (550)
T ss_pred cCCceeeeehhHHHHHHHHHHHhhhhhhhcC-hhh--HHHHHHHHHHhcCceeEEEeeeecccHHHHHHHHHHHHHHHHH
Confidence 234555677999999999999999999886 344 4555 5667778999999999999999999888776654432
Q ss_pred --------cchhHHH--HHHHHHHHhhhhhHHHhHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHHHHh
Q 008307 197 --------EKYAMAV--AVSAAGVILGWPFSILAFLPVVFYSLAR-------RFKQAFL---AGAATSVTLLALSVFVDY 256 (570)
Q Consensus 197 --------~~~~~ai--~~~~la~i~~~P~a~~l~~Pl~l~~l~~-------~~~~~l~---~~i~~~l~~l~~~v~iDs 256 (570)
+.+..+. ..+..++++.|||-++++++.++.+..| ++|.+.+ ..+.++..++++.++.||
T Consensus 165 v~~~~~~~s~r~rswlLg~I~vaGvFnRpTFlaF~~~p~~~w~~Rg~~~~~~~~Kdf~l~ll~f~~~a~~t~~lfil~Ds 244 (550)
T KOG4123|consen 165 VNEKLIKKSNRKRSWLLGIIFVAGVFNRPTFLAFIFAPCIIWFVRGFKKHVNNPKDFFLHLLIFSSVAFATSCLFILEDS 244 (550)
T ss_pred hcccccCcchHHHHHHhhhheeeeecccchHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHhhhHHHHhhHhheech
Confidence 1122222 2233455677899988887777766665 2554432 234455667888999999
Q ss_pred hhcc--c-cchhhhhhhhhhhcCCCCCccccccchhHHHHhhhhhhhHHHHHHHHHHH-HHhhhhcccCcchhHHHHH-H
Q 008307 257 QYYR--R-WTSSVLNLVVYNVVGGGESHLYGIEGPLYYLRNAFNNFNFGFVLALLFVG-ILPIARKKYAPGLVVVVSP-V 331 (570)
Q Consensus 257 ~fyg--~-~~~~~lN~~~yNv~~~~gs~~yGt~Pw~~Y~~~~l~n~~l~~~lall~~~-~~~~~~~~~~~~~~~~l~p-~ 331 (570)
.||| + +|++|||++|||....+ -+.+|+||.+ ++++.|+++.+ +.++.+ +-..+. .++ +... .
T Consensus 245 ~yy~~~~nfViTpwNnLkyNln~qn-la~HGlHpry---tHl~vNmplLf--gp~l~a~~q~~~~--~rk----l~t~ai 312 (550)
T KOG4123|consen 245 KYYGNGKNFVITPWNNLKYNLNIQN-LAQHGLHPRY---THLFVNMPLLF--GPLLFAAIQKGWD--LRK----LATWAI 312 (550)
T ss_pred hhhcCCCcEEEeehhhhhhcCCHHH-HHhcCcchhH---HHHHhcchHHh--hHHHHHHHHHHhh--hhh----hhhHHH
Confidence 9999 5 99999999999999887 7899999997 46778877753 322111 111111 111 1111 1
Q ss_pred HHHHHHHhcCCCcccceecchhhHHHHHHHhhh
Q 008307 332 YIWLLFMSMQPHKEERFLYPIYPLICVAASAVI 364 (570)
Q Consensus 332 ~~~l~v~Sl~pHKE~RFl~P~~Pll~l~AA~~l 364 (570)
++-++++|+.+|||.||+.|+.|++++..+-..
T Consensus 313 f~plffLSlf~HQEpRFLlPl~~pliln~~p~~ 345 (550)
T KOG4123|consen 313 FLPLFFLSLFPHQEPRFLLPLAPPLILNLGPTP 345 (550)
T ss_pred HHHHHHHHhccccCcchhhcchhHHHhhcCCcc
Confidence 223789999999999999999999998887643
No 7
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=99.18 E-value=4.2e-08 Score=107.18 Aligned_cols=304 Identities=14% Similarity=0.111 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcccccccHHHHHHHhhhcCcccccccCCCCCchhHHHHHHHHHHHHHHHhhCCCchHHH
Q 008307 47 VPVFALGMLRYMSATTNIIHDCDEVFNYWEPLHYLLYKSGFQTWEYSSEFALRSYLYILFHELVGRPASWLFAEDKVRVF 126 (570)
Q Consensus 47 ~~~~~ll~~R~~~al~~~~~~~DE~fq~~Epah~lv~G~G~~TWE~~p~~~iRS~~~p~l~a~~~~~~~~~l~~~~~~~~ 126 (570)
.+..+.++.|+..-= .+..|.||....+-..+++..| .|.|.|.+. .|+++... .....++|.+.
T Consensus 6 ~i~l~al~lRl~~Lg-~~~~~~DEa~ya~~a~~ml~~g----~~~~~p~~h-----~Pll~wl~-A~~~~lFG~se---- 70 (439)
T TIGR03663 6 LIVLFALLLRLFELG-LRVFHHDEAIHASFILKLLETG----VYSYDPAYH-----GPFLYHIT-AAVFHLFGISD---- 70 (439)
T ss_pred HHHHHHHHHHHHhcC-CCCCCCCchhHHHHHHHHHhcC----CCCcCCCCC-----CCHHHHHH-HHHHHHhCCCH----
Confidence 344455677887743 3457999988655444555444 344444222 25544433 23345677653
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHHHhc----cch---
Q 008307 127 YAVRLFLGLLSVTTDAVLVVALSRKYGRRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFFLL----EKY--- 199 (570)
Q Consensus 127 ~~~Rl~lal~s~~~d~~~~~~~~~~~g~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~l~----~~~--- 199 (570)
...|+..+++++. -..++...++.+|++.+.+..++.++++.+.+.+.-..+++..+.+.++++..+++ ++.
T Consensus 71 ~a~RL~~aL~g~~-v~l~~~~~r~~~~~~~al~AAllla~sp~~~~~sr~~~~D~~l~~f~~lal~~l~r~~~~~~~~~~ 149 (439)
T TIGR03663 71 ATARLLPAVFGVL-LPLTAWLYRKRLGDNEVLWAAVLLAFSPVMVYYSRFMRNDIFVAFFTLLAVGAAFRYLDTGKRRYL 149 (439)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 3689999888854 45567777788999999888888888887766665567787777777777777664 222
Q ss_pred hHHHHHHHHHHHhhhhhHHHhHHH---HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008307 200 AMAVAVSAAGVILGWPFSILAFLP---VVFYSLARR---------------FKQAFLAGAATSVTLLALSVFVDYQYYRR 261 (570)
Q Consensus 200 ~~ai~~~~la~i~~~P~a~~l~~P---l~l~~l~~~---------------~~~~l~~~i~~~l~~l~~~v~iDs~fyg~ 261 (570)
..+...+++++..-.+..++..++ ++++.++++ +.......+.++++.+++....=+.++..
T Consensus 150 ~lag~~~gLa~ltKg~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~w~~~~~~~~~~~~~i~~~~y~~~~~~ 229 (439)
T TIGR03663 150 FLAASALALAFTSKENAYLIILIFGGLLAIYLDWKKERAGARETLTRKRSLFWRWLRDLIGSVAVFAAIIMFFYTSLFRH 229 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 233445566665533323222121 233333311 11111111122222222222111111111
Q ss_pred cchhhhhhhh-------hhhcCCCCCccccccchhHHHHhhhhhhhHHHHHHHHHHHHHhhhhccc----Ccch-hHHHH
Q 008307 262 WTSSVLNLVV-------YNVVGGGESHLYGIEGPLYYLRNAFNNFNFGFVLALLFVGILPIARKKY----APGL-VVVVS 329 (570)
Q Consensus 262 ~~~~~lN~~~-------yNv~~~~gs~~yGt~Pw~~Y~~~~l~n~~l~~~lall~~~~~~~~~~~~----~~~~-~~~l~ 329 (570)
.. ...++.. -.-...+ ....+.+||+||+...+.-..-+ +.+...++....+++. ..+. ...+.
T Consensus 230 p~-~~~~i~~~~~~~~~~~w~~~~-~~~~~~~P~~yy~~~ll~~~~P~--~~~~~~~l~~~~~~r~~~~~~~~~~~f~~~ 305 (439)
T TIGR03663 230 PE-RLFSIVEAGTIKAVEHWASMH-RIARIYGPFYYYLPILLLYELPA--LIFAAAGVLGFLANRYATDKRRSFFLFACY 305 (439)
T ss_pred hH-HHHHHHHhhhhhHHHHHhhcc-ccCCCCCChHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccCcchHHHHHHH
Confidence 11 1111110 0001111 23444579999987665322111 2221123344443221 1111 11222
Q ss_pred HHHHHHHHHhcCCCcccceecchhhHHHHHHHhhhhhcccc
Q 008307 330 PVYIWLLFMSMQPHKEERFLYPIYPLICVAASAVIESFPDI 370 (570)
Q Consensus 330 p~~~~l~v~Sl~pHKE~RFl~P~~Pll~l~AA~~l~~l~~~ 370 (570)
-.++-+++||..+.|=...++|++|.+.+.||.++..+.+.
T Consensus 306 W~~~~~v~ys~~~~K~Pwy~l~~~~PlAll~g~~l~~~~~~ 346 (439)
T TIGR03663 306 WTLASLLFYSYIQEKVPWLVVHILVPLAILAAVGLSAVVLT 346 (439)
T ss_pred HHHHHHHHHhhcccCCcchhHHHHHhHHHHHHHHHHHHHHh
Confidence 33444788999999999999999999999999999987653
No 8
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=99.06 E-value=8.3e-08 Score=107.23 Aligned_cols=292 Identities=13% Similarity=0.142 Sum_probs=149.4
Q ss_pred HHhhhcC-CCCcccccccHHHHHHHhh-hcCcccccccCC-CCCchhHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Q 008307 58 MSATTNI-IHDCDEVFNYWEPLHYLLY-KSGFQTWEYSSE-FALRSYLYILFHELVGRPASWLFAEDKVRVFYAVRLFLG 134 (570)
Q Consensus 58 ~~al~~~-~~~~DE~fq~~Epah~lv~-G~G~~TWE~~p~-~~iRS~~~p~l~a~~~~~~~~~l~~~~~~~~~~~Rl~la 134 (570)
+..+... ..++||. +|.|++..++. |.-.. |. .+.+-+-.|-+.+++.....+++|.+. ...|+..+
T Consensus 20 ll~L~~r~lw~~DE~-ryA~iareMl~sGdWlv-----P~~~g~~y~eKPPL~yWl~Als~~LFG~~~----~a~RLpsa 89 (552)
T PRK13279 20 LLPLNTRLLWQPDET-RYAEISREMLASGDWIV-----PHFLGLRYFEKPIAGYWINSIGQWLFGDNN----FGVRFGSV 89 (552)
T ss_pred HHHhcCCCCCCCchH-HHHHHHHHHHHhCCcCc-----cccCCCcCCCCCcHHHHHHHHHHHHcCCCc----HHHHHHHH
Confidence 3335555 7899997 58888876664 42111 11 122222233344455455566778543 46899999
Q ss_pred HHHHHHHHHHHHHHHHhhC-chhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHH---HHHhcc---c-h----hHH
Q 008307 135 LLSVTTDAVLVVALSRKYG-RRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLAS---GFFLLE---K-Y----AMA 202 (570)
Q Consensus 135 l~s~~~d~~~~~~~~~~~g-~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al---~~~l~~---~-~----~~a 202 (570)
+.+.++-..+|..+++.++ ++.+.+..++.+++.+....+.-...+..-+.+.++++ +...+. + . ...
T Consensus 90 L~~~lt~llvy~larrl~~~r~~AllAaLIlls~~~v~~~g~~a~~D~~l~~fi~lal~~f~~~~~~~~~~~~~~~~lll 169 (552)
T PRK13279 90 FSTLLSALLVYWLALRLWRDRRTALLAALIYLSLFLVYGIGTYAVLDPMITLWLTAAMCSFWLALQAQTRRGKIGGYLLL 169 (552)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcccccchHHHHHHH
Confidence 8888888899999998875 56777777776666544433322222332222333332 222321 1 1 122
Q ss_pred HHHHHHHHHhhhhhHHHh-HHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHH-HHHHHhh---hccccchhhhhhhhhh
Q 008307 203 VAVSAAGVILGWPFSILA-FLPVVFYSLAR-RFKQAFLA---GAATSVTLLAL-SVFVDYQ---YYRRWTSSVLNLVVYN 273 (570)
Q Consensus 203 i~~~~la~i~~~P~a~~l-~~Pl~l~~l~~-~~~~~l~~---~i~~~l~~l~~-~v~iDs~---fyg~~~~~~lN~~~yN 273 (570)
++.+++|++.--|.+.++ ++.++.+.+.+ ++++.... ++..++++.++ .+++... |+..+.+. -|+-+|
T Consensus 170 Gla~Glg~LTKG~ial~lP~l~il~~ll~~rr~~~ll~~~~l~llvalli~lPW~lai~~~~pdf~~~ff~~-e~i~Rf- 247 (552)
T PRK13279 170 GLACGMGFMTKGFLALAVPVISVLPWVIWQKRWKELLIYGPLAVLSAVLVSLPWALAIAQREPDFWHYFFWV-EHIQRF- 247 (552)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH-HHHHHH-
Confidence 234455665533443332 12222333443 45443322 22222222111 2222110 11111111 123232
Q ss_pred hcCCCCCccccccchhHHHHhhhhhhhHHHHHHHHHH-HHHhhhhcc-cCcchhHHHHHHHHHHHHHhcCCCcccceecc
Q 008307 274 VVGGGESHLYGIEGPLYYLRNAFNNFNFGFVLALLFV-GILPIARKK-YAPGLVVVVSPVYIWLLFMSMQPHKEERFLYP 351 (570)
Q Consensus 274 v~~~~gs~~yGt~Pw~~Y~~~~l~n~~l~~~lall~~-~~~~~~~~~-~~~~~~~~l~p~~~~l~v~Sl~pHKE~RFl~P 351 (570)
.+ ++....+|++||+.+.+..+--+ .. ++| ++...++++ ..+....+++-+.+.++++|+.+.|.+++++|
T Consensus 248 --~~--~~~~h~~p~~yYl~~ll~~~lPW--~~-llp~al~~~w~~r~~~~~~~fll~W~~~~llfFSis~~Kl~~YiLP 320 (552)
T PRK13279 248 --AE--DDAQHKAPFWYYLPVLIAGSLPW--LG-LLPGALKQGWRERKKHPGTFYLLLWVVMPLLFFSIAKGKLPTYILP 320 (552)
T ss_pred --hc--ccccCCCCceehHHHHHHHHHHH--HH-HHHHHHHHHHHhhccCcHHHHHHHHHHHHHheeeeeCCCcchhHHH
Confidence 12 22333579999988776443112 11 222 222333332 23322222333444578899999999999999
Q ss_pred hhhHHHHHHHhhhhhcc
Q 008307 352 IYPLICVAASAVIESFP 368 (570)
Q Consensus 352 ~~Pll~l~AA~~l~~l~ 368 (570)
++|.+.+.+|..+....
T Consensus 321 ~~pplAlL~A~~l~~~~ 337 (552)
T PRK13279 321 CFAPLAILMAHYAVDCA 337 (552)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999998887764
No 9
>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
Probab=97.96 E-value=0.013 Score=65.77 Aligned_cols=149 Identities=19% Similarity=0.122 Sum_probs=96.0
Q ss_pred CCCcccccccHHHHHHHhhhcCcccccccCCCCCchhHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHH
Q 008307 65 IHDCDEVFNYWEPLHYLLYKSGFQTWEYSSEFALRSYLYILFHELVGRPASWLFAEDKVRVFYAVRLFLGLLSVTTDAVL 144 (570)
Q Consensus 65 ~~~~DE~fq~~Epah~lv~G~G~~TWE~~p~~~iRS~~~p~l~a~~~~~~~~~l~~~~~~~~~~~Rl~lal~s~~~d~~~ 144 (570)
..|+||.......-....-|.....+.+ +...+=.|=+.+++......++|.+. ...|+...+.+..+-..+
T Consensus 30 ~~~~de~~~~~~~~~m~~s~~w~~~~~~----g~~~~~kPPl~~Wl~a~~~~lfG~~~----~~~rl~~~l~~~~~~~l~ 101 (535)
T COG1807 30 LWDPDEARYAEIAREMLESGDWFTPQLL----GLPYFEKPPLVYWLQALSYLLFGVNE----WSARLPSALAGALTALLV 101 (535)
T ss_pred CCCCCchhHHHHHHHHHHcCCCcceeeC----CccccCCCcHHHHHHHHHHHHcCcch----HHHHHHHHHHHHHHHHHH
Confidence 5669999955544444444544444433 22222222234445455566677433 358888888888888888
Q ss_pred HHHHHHhhCchhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHHHhc---c--chh---HHHHHHHHHHHhhhhh
Q 008307 145 VVALSRKYGRRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFFLL---E--KYA---MAVAVSAAGVILGWPF 216 (570)
Q Consensus 145 ~~~~~~~~g~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~l~---~--~~~---~ai~~~~la~i~~~P~ 216 (570)
|..+++.+|+..+....++.++.+.....+.+-.+++.-+.++++++..+.+ + +.. .....+++|....-+.
T Consensus 102 y~l~k~l~~~~~a~~aali~~~~p~~~~~~~~~~~D~~l~~f~~la~~~~~~~~~~~~~~~~~l~~gl~lGL~~ltKg~~ 181 (535)
T COG1807 102 YWLAKRLFGRLAALLAALILLLTPLFFLIGRLALLDAALAFFLTLALALLYLALRARGKLKWLLLLGLALGLGFLTKGPG 181 (535)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHhchH
Confidence 9899888888788888888888888888888888888777777777765543 2 222 2234556666666666
Q ss_pred HHHhH
Q 008307 217 SILAF 221 (570)
Q Consensus 217 a~~l~ 221 (570)
+.++.
T Consensus 182 ~~~l~ 186 (535)
T COG1807 182 ALLLP 186 (535)
T ss_pred HHHHH
Confidence 66655
No 10
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=97.53 E-value=0.037 Score=60.98 Aligned_cols=101 Identities=19% Similarity=0.117 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CchhHHHHHHHHHhhccceee-ecccCchHHHHHHHHHHHHHHhccchhHHHHHHH
Q 008307 130 RLFLGLLSVTTDAVLVVALSRKY-GRRLASYTLAMLCLTSGCFFA-STSFLPSSFSMYAISLASGFFLLEKYAMAVAVSA 207 (570)
Q Consensus 130 Rl~lal~s~~~d~~~~~~~~~~~-g~~~a~~~ll~~~~s~~~~~~-strtlpnsf~~~~~~~al~~~l~~~~~~ai~~~~ 207 (570)
=++|+++-+.+-..+|+.+++.. +...+....+..+.+++.... .--+.++++++.+..+++.++.++|...++.+++
T Consensus 63 li~Qal~la~~~~pl~~lar~~~~~~~~a~~~~~~ylL~p~~~~~~~~dFH~~~~avPll~~~~~~~~~~r~~~~~~~~l 142 (449)
T PF09852_consen 63 LIVQALLLALGAIPLYRLARRRLLSRRLALLIALAYLLSPGLQGANLFDFHPVAFAVPLLLWALYALERRRWRLFILWAL 142 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhHHHHhhhhCCCcHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 35688888888889999999887 667777777777788876654 2357899999999999888777777777777766
Q ss_pred HHHHhhhhhHHHhHHHHHHHHHHH
Q 008307 208 AGVILGWPFSILAFLPVVFYSLAR 231 (570)
Q Consensus 208 la~i~~~P~a~~l~~Pl~l~~l~~ 231 (570)
+...+ .+..++..+-++++.+++
T Consensus 143 l~llv-KEd~~l~v~~~gl~~~~~ 165 (449)
T PF09852_consen 143 LLLLV-KEDLGLTVAGIGLYLLLR 165 (449)
T ss_pred HHHHH-HhhHHHHHHHHHHHHHHh
Confidence 66655 566666666588888776
No 11
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=97.30 E-value=0.086 Score=58.75 Aligned_cols=170 Identities=15% Similarity=0.061 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHhhhcC---CCCcccccccHHHHHHHhhhcCcccccccCCCCCchhHHHHHHHHHHHHHHHhhCCCc
Q 008307 46 FVPVFALGMLRYMSATTNI---IHDCDEVFNYWEPLHYLLYKSGFQTWEYSSEFALRSYLYILFHELVGRPASWLFAEDK 122 (570)
Q Consensus 46 ~~~~~~ll~~R~~~al~~~---~~~~DE~fq~~Epah~lv~G~G~~TWE~~p~~~iRS~~~p~l~a~~~~~~~~~l~~~~ 122 (570)
..++.+.+++|+.-.+..+ ..|+--.+|.-. + |. .++++ +|--|-. +=..+....+.+.+++|.+.
T Consensus 69 ~~l~~~~~i~ql~~i~~~~~~p~~D~~~v~~~A~--~------~~-~~~~~-~Y~~~yP-nn~g~~l~~~~l~kifg~~~ 137 (483)
T TIGR03766 69 IVIFILLLILQLILVTALHPLIGWDAGAVHTAAT--K------SN-ESSIS-NYFSRNP-NNLFLLLFMHFLYKLFGETS 137 (483)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCcCHHHHHHHHh--c------CC-CcccC-ceeeECC-chHHHHHHHHHHHHHhCccH
Confidence 3445566778888777654 566644444333 1 11 11121 2222210 01111122233455666543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHHHh--cc-c-
Q 008307 123 VRVFYAVRLFLGLLSVTTDAVLVVALSRKYGRRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFFL--LE-K- 198 (570)
Q Consensus 123 ~~~~~~~Rl~lal~s~~~d~~~~~~~~~~~g~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~l--~~-~- 198 (570)
. ...+++..+++..+-...|+.+++.+|++.+++.+++.+..+....+..=..+++..+.+.++++..+. .+ +
T Consensus 138 ~---~~~~llNil~~~~si~liy~i~k~lf~~~~a~~a~~l~~l~~~~~~y~~~~Ysd~~~l~~~~l~l~~~~~~~~~~~ 214 (483)
T TIGR03766 138 W---LFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLLALSPYILIPYTDTWVLPFVSLFLFLYTVISKKTD 214 (483)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccc
Confidence 2 335888888888889999999999999999999887777666544444456677777777776654332 11 1
Q ss_pred ----h---hHHHHHHHHHHHhhhhhHHHhHHHHHHHHHH
Q 008307 199 ----Y---AMAVAVSAAGVILGWPFSILAFLPVVFYSLA 230 (570)
Q Consensus 199 ----~---~~ai~~~~la~i~~~P~a~~l~~Pl~l~~l~ 230 (570)
. ..++.++++|..+ +|.++++.+.+.++.+.
T Consensus 215 ~~~~~~~~Il~gillal~~~i-Kp~~iI~liA~~i~~~l 252 (483)
T TIGR03766 215 LRKKIALSILLGVLLAIAYFI-KPSAIIFVIAIFIVLFL 252 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHH
Confidence 1 2334556667766 79988877666666554
No 12
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=97.28 E-value=0.012 Score=54.14 Aligned_cols=115 Identities=24% Similarity=0.276 Sum_probs=80.6
Q ss_pred HHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHH
Q 008307 112 RPASWLFAEDKVRVFYAVRLFLGLLSVTTDAVLVVALSRKYGRRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLAS 191 (570)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~Rl~lal~s~~~d~~~~~~~~~~~g~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al 191 (570)
.....++|.+ ....|+...+++..+-..+|+..++.+|++.+....++.++++.....+....+++..+.+.++++
T Consensus 11 ~~~~~l~G~~----~~~~~~~~~l~~~~~~~~~y~i~r~~~~~~~a~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 86 (159)
T PF13231_consen 11 ALFFKLFGDS----VWALRLFNILFSLLTLLLIYLIARRLFGRRAALIAALLLALSPMFIFYSASARPDMLLLFFFLLAL 86 (159)
T ss_pred HHHHHHhCcC----HHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444555642 246799999999999999999999999988888888777777777777777778888888888888
Q ss_pred HHHhc----cc---hhHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHH
Q 008307 192 GFFLL----EK---YAMAVAVSAAGVILGWPFSILAFLPVVFYSLAR 231 (570)
Q Consensus 192 ~~~l~----~~---~~~ai~~~~la~i~~~P~a~~l~~Pl~l~~l~~ 231 (570)
+...+ ++ ...++.+.+++... ++..+.+.+++.++.+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~-k~~~~~~~~~~~~~l~~~ 132 (159)
T PF13231_consen 87 YAFYRYIKSKKWRWWILAGLLLGLAFLT-KYTFLLLIPALLLYLLLS 132 (159)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 77765 22 12333455556555 555555555565555544
No 13
>PF09913 DUF2142: Predicted membrane protein (DUF2142); InterPro: IPR018674 This family of conserved hypothetical proteins has no known function.
Probab=96.76 E-value=0.12 Score=55.65 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=56.4
Q ss_pred HHHhhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHH
Q 008307 114 ASWLFAEDKVRVFYAVRLFLGLLSVTTDAVLVVALSRKYGRRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGF 193 (570)
Q Consensus 114 ~~~~l~~~~~~~~~~~Rl~lal~s~~~d~~~~~~~~~~~g~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~ 193 (570)
+.++++.+....+++.|++..++++..-+...|... ..++.+++.+..+-..+.++..-+++++..++.+.+++
T Consensus 109 ig~ll~l~~~~~~~l~Rl~nll~~~~l~~~Ai~~~p------~~k~l~~~i~l~Pm~~~~~aS~s~D~~~~~~~~l~~a~ 182 (389)
T PF09913_consen 109 IGRLLGLSVLVMYYLGRLFNLLLYALLVYLAIKLAP------RGKWLLALIALLPMTLFQAASVSYDGLIIALAFLFIAL 182 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc------hhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 456678888888899999999998887777776653 23355556666665566666677888888888877777
Q ss_pred Hhc
Q 008307 194 FLL 196 (570)
Q Consensus 194 ~l~ 196 (570)
+++
T Consensus 183 ~l~ 185 (389)
T PF09913_consen 183 LLR 185 (389)
T ss_pred HHH
Confidence 765
No 14
>PF04188 Mannosyl_trans2: Mannosyltransferase (PIG-V)); InterPro: IPR007315 This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI [], [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=95.95 E-value=0.23 Score=54.85 Aligned_cols=161 Identities=14% Similarity=0.171 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHhhC-chhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhh
Q 008307 137 SVTTDAVLVVALSRKYG-RRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFFLLEKYAMAVAVSAAGVILGWP 215 (570)
Q Consensus 137 s~~~d~~~~~~~~~~~g-~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~l~~~~~~ai~~~~la~i~~~P 215 (570)
..++-..+|+..++.++ ++.+..+.++.++++...+. +...+||+-+.++..++....+++...+..+.++++.. |.
T Consensus 123 ~~la~~~L~~l~~~~~~~~~~a~~a~ll~~~~PasiF~-sa~YsEslf~~lsf~gl~~~~~~~~~~a~~~~~la~~~-Rs 200 (443)
T PF04188_consen 123 FLLAAVALYRLTRRVFKSRKLALLAALLFIFSPASIFL-SAPYSESLFALLSFAGLYLLERGRWWLAGLLFALATLT-RS 200 (443)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHccHHHHh-hcCccHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-Hh
Confidence 34556778888877664 45676666676777755444 45679999989999999888888888888888888876 56
Q ss_pred hHHHhHHHHHHHHHHH---------H-HH--HHHHHHHHHHHHHHHHHHHHHhhhccccchh-------hhh----hhhh
Q 008307 216 FSILAFLPVVFYSLAR---------R-FK--QAFLAGAATSVTLLALSVFVDYQYYRRWTSS-------VLN----LVVY 272 (570)
Q Consensus 216 ~a~~l~~Pl~l~~l~~---------~-~~--~~l~~~i~~~l~~l~~~v~iDs~fyg~~~~~-------~lN----~~~y 272 (570)
.+++.+.++....+.. + .+ +.+...++.++++.+..+....+-|.++.-. ||- -..|
T Consensus 201 nGll~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~i~~pf~~~q~~~y~~fC~~~~~~~~~~WC~~~~P~~Y 280 (443)
T PF04188_consen 201 NGLLLAGFFAYELLGIYYLDLRQLRRQRRLVRALISAILSGLLIFLPFVLFQYYAYYRFCPPRSFGDEPPWCNNTIPSIY 280 (443)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhhccCccch
Confidence 6776666554433221 0 11 1122334445556667777777767554322 111 1245
Q ss_pred hhcCCCCCccccccchhHHHHhhhhhhhHH
Q 008307 273 NVVGGGESHLYGIEGPLYYLRNAFNNFNFG 302 (570)
Q Consensus 273 Nv~~~~gs~~yGt~Pw~~Y~~~~l~n~~l~ 302 (570)
+-+++ ..|++--.-||=.+-+|||.+.
T Consensus 281 s~vQ~---~YWnvGfl~Yw~~~niPnFlla 307 (443)
T PF04188_consen 281 SFVQS---HYWNVGFLRYWTLKNIPNFLLA 307 (443)
T ss_pred HHHHH---HHHccchHHhccccccchHHHH
Confidence 55554 4788888777766667887554
No 15
>COG5542 Predicted integral membrane protein [Function unknown]
Probab=95.48 E-value=0.81 Score=49.34 Aligned_cols=169 Identities=17% Similarity=0.217 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCc-hhHHHHHHHHHhhccceeeecccC--chHHHHHHHHHHHHHHhccchhHHH
Q 008307 127 YAVRLFLGLLSVTTDAVLVVALSRKYGR-RLASYTLAMLCLTSGCFFASTSFL--PSSFSMYAISLASGFFLLEKYAMAV 203 (570)
Q Consensus 127 ~~~Rl~lal~s~~~d~~~~~~~~~~~g~-~~a~~~ll~~~~s~~~~~~strtl--pnsf~~~~~~~al~~~l~~~~~~ai 203 (570)
....+..-+..+.+-+.+|+..++++|. +.++++..+..+++...+.+ ..- .+|+=|.+.+.+++.+-.++...+.
T Consensus 117 l~~~l~s~~~~~~~ay~lY~~tk~~y~~~~~a~fa~i~~~~~P~~i~~s-~iw~~teSlf~ll~~l~iyf~~~k~~~~a~ 195 (420)
T COG5542 117 LAIKLFSNIADFVAAYFLYKITKLRYGLGSMARFATILVILSPSVIYNS-AIWGQTESLFTLLSILAIYFFSIKKQIPAL 195 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhheEEEEEeccHHHhhh-hHHhccchHHHHHHHHHHHHHHccchhHHH
Confidence 3455666677778889999999999997 78888766665655433333 233 6777778888888888778889999
Q ss_pred HHHHHHHHhhhhhHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-H----------HHHHHhhhccccchhhhhhh
Q 008307 204 AVSAAGVILGWPFSILAFLPVVFYSLAR--RFKQAFLAGAATSVTLLA-L----------SVFVDYQYYRRWTSSVLNLV 270 (570)
Q Consensus 204 ~~~~la~i~~~P~a~~l~~Pl~l~~l~~--~~~~~l~~~i~~~l~~l~-~----------~v~iDs~fyg~~~~~~lN~~ 270 (570)
++.++|..+ ||.+++ +.|+.+..+.+ +.+........+++.... . ....|-++=+...+.+.+..
T Consensus 196 ~~faLa~l~-Rsngi~-~~p~fl~~~ik~~~ik~i~~~l~~~~l~~~~ll~~~~~~~~~~~~~~~~y~~~~~~f~~~~~~ 273 (420)
T COG5542 196 FFFALATLF-RSNGIF-LSPLFLIPLIKNRKIKIIWYLLPSGSLTYLSLLMPAWILGRNAFEIFLGYWRQSNGFKEQGKN 273 (420)
T ss_pred HHHHHHHHh-ccchhH-HHHHHHHHHHhhhhHHHhhhhhhhHHHHHHHHHHHHHHhCccchhhhhhhhcccccchHHHhc
Confidence 999999987 576655 45576666665 222222111111111111 1 11222222233567778888
Q ss_pred hhhhcCCCCCcccccc-chhHHHHhhhhhh
Q 008307 271 VYNVVGGGESHLYGIE-GPLYYLRNAFNNF 299 (570)
Q Consensus 271 ~yNv~~~~gs~~yGt~-Pw~~Y~~~~l~n~ 299 (570)
+.|+-+-.+++.|++. |.+| ..+-.+|+
T Consensus 274 ~~~iy~~I~~~~w~vg~~~~~-~~~~~~~~ 302 (420)
T COG5542 274 APNIYSWIPNNYWNVGLPKYW-ISNNIPNF 302 (420)
T ss_pred chHHHHhhccceeeeeeeEEe-eccCCccH
Confidence 8888887767788876 4333 34444554
No 16
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=91.96 E-value=33 Score=40.86 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=21.2
Q ss_pred ccceecchhhHHHHHHHhhhhhcccc
Q 008307 345 EERFLYPIYPLICVAASAVIESFPDI 370 (570)
Q Consensus 345 E~RFl~P~~Pll~l~AA~~l~~l~~~ 370 (570)
-.||.+...+++++.|+.++..+.+.
T Consensus 338 ~~R~~fi~~f~~~~~~~~~l~~~~~~ 363 (843)
T PF09586_consen 338 PYRWSFIFIFLISLLAARGLEELKKI 363 (843)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 47999999999999999988876543
No 17
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=91.46 E-value=32 Score=39.76 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=19.1
Q ss_pred ccceecchhhHHHHHHHhhhhhc
Q 008307 345 EERFLYPIYPLICVAASAVIESF 367 (570)
Q Consensus 345 E~RFl~P~~Pll~l~AA~~l~~l 367 (570)
=+||+..+.+++++.+|+.+...
T Consensus 257 p~RFl~i~~~~~~ll~a~~~~~~ 279 (616)
T PF10131_consen 257 PWRFLSIASVFLALLGALLLWRI 279 (616)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999988887654
No 18
>COG4745 Predicted membrane-bound mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=30 Score=38.23 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhhcCCCCcccccccHHHHHHHhhhcCcccccccCCCCCchhHHHHHHHHHHHHHHHhhCCCchHHHHHH
Q 008307 50 FALGMLRYMSATTNIIHDCDEVFNYWEPLHYLLYKSGFQTWEYSSEFALRSYLYILFHELVGRPASWLFAEDKVRVFYAV 129 (570)
Q Consensus 50 ~~ll~~R~~~al~~~~~~~DE~fq~~Epah~lv~G~G~~TWE~~p~~~iRS~~~p~l~a~~~~~~~~~l~~~~~~~~~~~ 129 (570)
...++.|+.+-=+ +-+|-||.=-.-=.+.++- .-+|+|+| .+. +|+++-+- +.+-+++|.+... .
T Consensus 23 ~~Al~~RL~~Lg~-r~~h~DEs~~~~w~Lk~l~----~Gaw~YrP--i~H---GPfL~hvn-~avF~~lGasDat----a 87 (556)
T COG4745 23 AIALLARLYNLGL-RPFHFDESRHATWILKYLE----QGAWSYRP--IYH---GPFLYHVN-YAVFGLLGASDAT----A 87 (556)
T ss_pred HHHHHHHHHhcCC-CccccchhhHHHHHHHHHh----cCcceecc--ccc---Cchhhhhh-hhhhhhcccchhh----h
Confidence 3445667665433 3566688421111223332 33899987 333 35454333 4444556765543 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhccceeeecccCchHHH-HHHHHHHHHHHhc
Q 008307 130 RLFLGLLSVTTDAVLVVALSRKYGRRLASYTLAMLCLTSGCFFASTSFLPSSFS-MYAISLASGFFLL 196 (570)
Q Consensus 130 Rl~lal~s~~~d~~~~~~~~~~~g~~~a~~~ll~~~~s~~~~~~strtlpnsf~-~~~~~~al~~~l~ 196 (570)
|++-++...+.-. .-.+-++++|..-..+...+.++|+.+.|+| |+.=|-+- ..|++.+.+...+
T Consensus 88 RlvvAv~G~llpL-~awL~R~rL~d~evlal~~LLA~sPvlVYYS-RFmR~Dl~la~ftl~aVg~~vR 153 (556)
T COG4745 88 RLVVAVTGVLLPL-TAWLYRTRLGDKEVLALATLLAFSPVLVYYS-RFMRNDLLLAAFTLLAVGFAVR 153 (556)
T ss_pred hhhHHHhhhHHHH-HHHHHHHhccchHHHHHHHHHhcChhhhhHH-HHHhhhHHHHHHHHHHHHHHHH
Confidence 5555544333221 2223456788777777778889999888776 66655543 4555666666654
No 19
>COG1287 Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]
Probab=90.55 E-value=12 Score=44.27 Aligned_cols=102 Identities=19% Similarity=0.246 Sum_probs=69.1
Q ss_pred CCCcccccccHHHHHHHhhhc---Ccccccc-cCCCCCc-hhHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHH
Q 008307 65 IHDCDEVFNYWEPLHYLLYKS---GFQTWEY-SSEFALR-SYLYILFHELVGRPASWLFAEDKVRVFYAVRLFLGLLSVT 139 (570)
Q Consensus 65 ~~~~DE~fq~~Epah~lv~G~---G~~TWE~-~p~~~iR-S~~~p~l~a~~~~~~~~~l~~~~~~~~~~~Rl~lal~s~~ 139 (570)
+...|.+||+-+....+..|. ...+|+. -|+..+. .-+++++.+..+..+..+.+ .....+.-.+=+++..+
T Consensus 48 ~~e~Dpyy~~r~~~~~l~~g~~~~~~~~~~~YP~G~~i~~~pl~~~l~~~~~~~~~~~~~---~~~~~~~~~~PailG~L 124 (773)
T COG1287 48 FGEFDPYYHYRLIENLLKNGPPRDFFDPYDNYPPGSPIDFPPLFLYLTAALGLILGSIFP---VSLETAALLFPAILGVL 124 (773)
T ss_pred cCCCCcHHHHHHHHHHHHhCCCccCCChhhcCCCCCCCCCCchHHHHHHHHHHHHHccCc---hHHHHHHHHhhHHHhhH
Confidence 568899999998888877773 3456665 4444455 55555555555554444333 22233344444566666
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHhhcc
Q 008307 140 TDAVLVVALSRKYGRRLASYTLAMLCLTSG 169 (570)
Q Consensus 140 ~d~~~~~~~~~~~g~~~a~~~ll~~~~s~~ 169 (570)
+-...|..+++..|...+.+..++.+.+++
T Consensus 125 ~vI~vYl~~r~i~~~~~g~~aa~ll~~~p~ 154 (773)
T COG1287 125 TVIPVYLLGRRILGDKTGLLAALLLALAPG 154 (773)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHhhH
Confidence 777888889999999999999988888887
No 20
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=90.11 E-value=8.4 Score=38.54 Aligned_cols=71 Identities=28% Similarity=0.340 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC-chhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHHHhc
Q 008307 126 FYAVRLFLGLLSVTTDAVLVVALSRKYG-RRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFFLL 196 (570)
Q Consensus 126 ~~~~Rl~lal~s~~~d~~~~~~~~~~~g-~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~l~ 196 (570)
....|+..+++++.+-...|...++..+ ...+....++.+++...+..+..-+.++..+.++++++..+.+
T Consensus 82 ~~~~R~~~~l~~~~~~~l~y~~~~~~~~s~~~al~aa~l~~~~~~~~~~sr~~~~D~~l~~f~~la~~~~~~ 153 (245)
T PF02366_consen 82 YWAARLPSALFGALTVPLVYLILRRLFGSRRAALLAALLLALDPSLIVQSRYALLDSILLFFILLAIYCLLR 153 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999988776 5677777778888887777777677888887777777766553
No 21
>PF09594 DUF2029: Protein of unknown function (DUF2029); InterPro: IPR018584 This is a putative transmembrane protein from prokaryotes. It is likely to be conserved between Mycobacterium species []. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=90.11 E-value=20 Score=35.12 Aligned_cols=124 Identities=23% Similarity=0.198 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch--hHHHH---HHHHHhhccceeeec
Q 008307 101 YLYILFHELVGRPASWLFAEDKVRVFYAVRLFLGLLSVTTDAVLVVALSRKYGRR--LASYT---LAMLCLTSGCFFAST 175 (570)
Q Consensus 101 ~~~p~l~a~~~~~~~~~l~~~~~~~~~~~Rl~lal~s~~~d~~~~~~~~~~~g~~--~a~~~---ll~~~~s~~~~~~st 175 (570)
|.||-..+.+..++..+ + .-..+.+..+++..+.....+...+..+.+ ..... .+..++.+ ......
T Consensus 1 ~~YpP~~~~l~~p~~~l-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~ 72 (241)
T PF09594_consen 1 YVYPPLFALLFAPLALL-P------FPVAFLLWALLSLAALALAVRLLLRRLGRRKPPGRALLLALLLLAFPP-VLSALG 72 (241)
T ss_pred CcCcHHHHHHHHHHHHc-C------HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHH-HHHHHH
Confidence 34554555554554432 2 223344445555555555555555555542 11111 12223332 222222
Q ss_pred ccCchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHH-HHHHHH
Q 008307 176 SFLPSSFSMYAISLASGFFLLEKYAMAVAVSAAGVILGWPFSILAFLPVVFYSLAR-RFKQAF 237 (570)
Q Consensus 176 rtlpnsf~~~~~~~al~~~l~~~~~~ai~~~~la~i~~~P~a~~l~~Pl~l~~l~~-~~~~~l 237 (570)
.--.|.+.+.+...++..+.++|...++.++++++.. .++.+++.+ ..+.+ ++|..+
T Consensus 73 ~gq~~~l~~~l~~~a~~~~~r~r~~~agv~lgla~~~-K~~p~~~l~----~ll~~r~~r~~~ 130 (241)
T PF09594_consen 73 LGQFDLLVAALLLLALLALRRGRPWLAGVLLGLAAAI-KLYPALLLP----ALLIRRRWRAAL 130 (241)
T ss_pred hccHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-HHHHHHHHH----HHHhcchHHHHH
Confidence 2234555556666666666667778888888888876 455444333 23334 666655
No 22
>PLN02841 GPI mannosyltransferase
Probab=89.06 E-value=13 Score=40.90 Aligned_cols=163 Identities=12% Similarity=0.079 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHhhhcCCC-------Ccccc-cccHHHHHHHhhh---cCcccccccCCCCCchhHHHHHHHHHHHHHH
Q 008307 47 VPVFALGMLRYMSATTNIIH-------DCDEV-FNYWEPLHYLLYK---SGFQTWEYSSEFALRSYLYILFHELVGRPAS 115 (570)
Q Consensus 47 ~~~~~ll~~R~~~al~~~~~-------~~DE~-fq~~Epah~lv~G---~G~~TWE~~p~~~iRS~~~p~l~a~~~~~~~ 115 (570)
.++..-+++|+.-..+..+. -+|-- .-..|-+.+...| |..-|.-|+| ++ +.+..|-.
T Consensus 10 ~vll~a~~lRl~L~~yg~~~D~~~eVsytdidY~vftDga~lv~~G~SPY~r~TYrytP----------LL-a~LllPn~ 78 (440)
T PLN02841 10 SLLLASALLRVALIVYGEWQDAHMEVRYTDVDYLVFSDAAALVASGKSPFARDTYRYSP----------LL-ALLLVPNS 78 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccccccccchHHHHHHHHHHHcCCCCCCCCCCCcCh----------HH-HHHHcchh
Confidence 45555667787665554332 23333 3345777777777 4566777764 22 22211100
Q ss_pred HhhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCchhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHHH
Q 008307 116 WLFAEDKVRVFYAVRLFLGLLSVTTDAVLVVALSRK-YGRRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFF 194 (570)
Q Consensus 116 ~~l~~~~~~~~~~~Rl~lal~s~~~d~~~~~~~~~~-~g~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~ 194 (570)
. .+ .-..+++.+++=.++-+.+++..++. ...+.+.+...+-++++...-.++|--++++...+++.+++..
T Consensus 79 ~-~~------~~fgk~LF~l~Dll~a~ll~~il~~~~~~~~~~~~~a~~wL~NPlti~istrGSse~i~~~lvl~~L~~l 151 (440)
T PLN02841 79 L-LH------RSWGKFLFSAADLLVGLFIHTILRLRGVPEKVCTWSVMVWLFNPFTFTIGTRGNCEPIVCAVILWILICL 151 (440)
T ss_pred h-hh------hhHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHhCcHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 0 00 12234444444444444555554422 1123445555667889999999999999999988999999988
Q ss_pred hccchhHHHHHHHHHHHhhhhhHHHhHHHHHHHH
Q 008307 195 LLEKYAMAVAVSAAGVILGWPFSILAFLPVVFYS 228 (570)
Q Consensus 195 l~~~~~~ai~~~~la~i~~~P~a~~l~~Pl~l~~ 228 (570)
.+++...+.++.|+++-+ ....+++++|+.++.
T Consensus 152 ~~g~~~~Aa~~lglavhf-kiYPiIy~~Pi~l~l 184 (440)
T PLN02841 152 MNGRLLQAAFWYGLVVHF-RIYPIIYALPIILVL 184 (440)
T ss_pred HcCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHh
Confidence 999999999999998877 466677888887655
No 23
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.89 E-value=43 Score=38.92 Aligned_cols=141 Identities=20% Similarity=0.189 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcccccccHHHHHHHhhhcCcccccccCCCCCchhHHHHHHHHHHHHHHHh-------hC
Q 008307 47 VPVFALGMLRYMSATTNIIHDCDEVFNYWEPLHYLLYKSGFQTWEYSSEFALRSYLYILFHELVGRPASWL-------FA 119 (570)
Q Consensus 47 ~~~~~ll~~R~~~al~~~~~~~DE~fq~~Epah~lv~G~G~~TWE~~p~~~iRS~~~p~l~a~~~~~~~~~-------l~ 119 (570)
.++.+.+++|+...-.+..---|| +|+ .++|-++|+..+-......+.=++++..++....- -|
T Consensus 29 ~lt~ls~~~R~~~i~~~~~VVfdE-------~hf--gkFaS~Yl~~~~~fDvHPPL~kml~al~~~L~g~~g~f~f~~~g 99 (699)
T COG1928 29 LLTVLSFIVRFWKIGNPNTVVFDE-------AHF--GKFASYYLNGTPFFDVHPPLGKMLIALVGGLEGYDPPFDFQLIG 99 (699)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEee-------eee--ccchHHhhcCCcccccCCcHHHHHHHhhhhhhccCCCcccccCC
Confidence 344455677887766666555566 232 12467778777666666666666666665544211 01
Q ss_pred CCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhccceeeeccc-CchHHHHHHHHHHHHHHh
Q 008307 120 EDKV---RVFYAVRLFLGLLSVTTDAVLVVALSRKYGRRLASYTLAMLCLTSGCFFASTSF-LPSSFSMYAISLASGFFL 195 (570)
Q Consensus 120 ~~~~---~~~~~~Rl~lal~s~~~d~~~~~~~~~~~g~~~a~~~ll~~~~s~~~~~~strt-lpnsf~~~~~~~al~~~l 195 (570)
.+.. ......|.+.|++++++...+|..+++.-......+...++....+.+...+|+ |=+++.+.+.+.+.+.+.
T Consensus 100 ~~~~~~~~~y~~mR~f~A~lgsl~vpl~y~t~r~~~~s~l~~~l~~llv~~dn~~~t~sR~ILLDs~LlfF~~~~~y~~~ 179 (699)
T COG1928 100 LTEYPFGYNYVGMRFFNALLGSLTVPLVYLIARRIGYSRLVAALAGLLVAFDNSFVTESRFILLDSFLLFFIVAAAYCFL 179 (699)
T ss_pred cccccCCCChHHHHHHHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 134679999999999999999988875333333333333344445566666674 677777777777777766
Q ss_pred c
Q 008307 196 L 196 (570)
Q Consensus 196 ~ 196 (570)
+
T Consensus 180 r 180 (699)
T COG1928 180 R 180 (699)
T ss_pred H
Confidence 4
No 24
>PF04922 DIE2_ALG10: DIE2/ALG10 family; InterPro: IPR007006 Members of this entry are glycosyltransferases, belonging to the ALG10 family. The majority of the members are annotated as alpha-1,2 glucosyltransferas. The ALG10 protein from Saccharomyces cerevisiae (Baker's yeast) encodes the alpha-1,2 glucosyltransferase of the endoplasmic reticulum. This protein has been characterised in Rat as potassium channel regulator 1 [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane
Probab=85.35 E-value=19 Score=39.02 Aligned_cols=142 Identities=16% Similarity=0.150 Sum_probs=70.9
Q ss_pred cccccccHHHHHHHhhhcCcccccccCCCCCchhHHHHHHHHH-HHHHHHhhCCCchHHHHHHHHHHHHHHH-HHHHHHH
Q 008307 68 CDEVFNYWEPLHYLLYKSGFQTWEYSSEFALRSYLYILFHELV-GRPASWLFAEDKVRVFYAVRLFLGLLSV-TTDAVLV 145 (570)
Q Consensus 68 ~DE~fq~~Epah~lv~G~G~~TWE~~p~~~iRS~~~p~l~a~~-~~~~~~~l~~~~~~~~~~~Rl~lal~s~-~~d~~~~ 145 (570)
-||.|---..-+|--.. +. ||.| .|=+.=++.+.+.. ..+.....+.+.. ...|.+..+.+. .+-+.++
T Consensus 9 mDEiFHipQaq~YC~g~--f~--~WDp--KITTpPGLYlls~~~l~~~~~~~~~~~~---~~LR~~N~l~~~~~~~~l~~ 79 (379)
T PF04922_consen 9 MDEIFHIPQAQAYCRGR--FT--EWDP--KITTPPGLYLLSVAALFPGSWFFGCSSL---SVLRSTNLLFALVVLPWLIY 79 (379)
T ss_pred ccchhhhHHHHHHHhch--hh--hhCC--ccCCCchHHHHHHHHHhhHHHhhcccch---HHHHHHHHHHHHHHHHHHHH
Confidence 48888655444443322 22 4543 45444233232222 1222222333322 228888777666 4455555
Q ss_pred HHHHHhh---CchhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhHHHh
Q 008307 146 VALSRKY---GRRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFFLLEKYAMAVAVSAAGVILGWPFSILA 220 (570)
Q Consensus 146 ~~~~~~~---g~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~l~~~~~~ai~~~~la~i~~~P~a~~l 220 (570)
+.++..- +.....+ .+-.++-+-.|+++-=...+..++.+++.+....+++++..+..+..+|+++ |+|+++-
T Consensus 80 ~~~~~~~~~~~~~~~~~-a~~ialfPllfFFsfLYYTDv~St~~VL~~yl~~~~~~~~~sal~g~~sv~f-RQTNIvW 155 (379)
T PF04922_consen 80 RILRFLNPRRSRKAILS-ALNIALFPLLFFFSFLYYTDVWSTTFVLLMYLASLKRRHWLSALFGLLSVLF-RQTNIVW 155 (379)
T ss_pred HHHHHHhhhhHHHHHHH-HHHHHHhhHHHHhhHHHHhcHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH-hcchHHH
Confidence 5554221 1111112 2222233344444444445666666666666556667777776666677766 7999773
No 25
>TIGR03459 crt_membr carotene biosynthesis associated membrane protein. This model represents a family of hydrophobic and presumed membrane proteins. The genes encoding these proteins are syntenically associated with (found proximal to) genes of carotene biosynthesis ususally including phytoene synthase (crtB), phytoene dehydrogenase (crtI) and geranylgeranyl pyrophosphate synthase (ispA).
Probab=83.29 E-value=82 Score=35.13 Aligned_cols=110 Identities=13% Similarity=-0.007 Sum_probs=67.8
Q ss_pred HHhhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhccce-eeecccCchHHHHHHHHHHHHH
Q 008307 115 SWLFAEDKVRVFYAVRLFLGLLSVTTDAVLVVALSRKYGRRLASYTLAMLCLTSGCF-FASTSFLPSSFSMYAISLASGF 193 (570)
Q Consensus 115 ~~~l~~~~~~~~~~~Rl~lal~s~~~d~~~~~~~~~~~g~~~a~~~ll~~~~s~~~~-~~strtlpnsf~~~~~~~al~~ 193 (570)
..+.|.+...-..+-|++..+--..+-++.-|+.++ .|.+-. ..+.+...|+.+. |...--.-+++-+.+.+.++..
T Consensus 155 ~~l~g~~i~~~v~~~Rl~~l~g~~l~~w~~~rLar~-~g~~~~-~AlWL~~~NPLviihlvgg~HnealM~gl~l~gl~~ 232 (470)
T TIGR03459 155 TTVTGDNVTAGTLAFKLLSLPGLAVMVWAVPKLATH-LGGNPT-VALWLGVLNPLVVIHLIGGMHNEMLMVGLVSAGILL 232 (470)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH-HHHHHHHcCchhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 344555555545778988887777788888888874 453322 2233344566433 3333344556666677777777
Q ss_pred HhccchhHHHHHHHHHHHhhhhhHHHhHHHHHHHH
Q 008307 194 FLLEKYAMAVAVSAAGVILGWPFSILAFLPVVFYS 228 (570)
Q Consensus 194 ~l~~~~~~ai~~~~la~i~~~P~a~~l~~Pl~l~~ 228 (570)
.+++|...++.++++++.+ -+++ ++++|+..+.
T Consensus 233 ~~r~~~~~g~vli~~a~~V-K~~a-~l~Lpf~~~~ 265 (470)
T TIGR03459 233 ALKRRPVAGIALIAVAVAL-KATA-GIALPFVVWI 265 (470)
T ss_pred HHhcccHHHHHHHHHHHHH-hHHH-HHHHHHHHHH
Confidence 7888888788888888876 3433 3455665544
No 26
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=82.04 E-value=28 Score=33.67 Aligned_cols=46 Identities=26% Similarity=0.288 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 008307 107 HELVGRPASWLFAEDKVRVFYAVRLFLGLLSVTTDAVLVVALSRKYGR 154 (570)
Q Consensus 107 ~a~~~~~~~~~l~~~~~~~~~~~Rl~lal~s~~~d~~~~~~~~~~~g~ 154 (570)
+..+++.+.. +. +...+-+-+=++.++.++.+-..+|..+.+..++
T Consensus 23 f~llg~lf~~-lp-~~~~ia~~vNl~Sal~sA~tv~~l~~~~~~l~~~ 68 (178)
T PF11028_consen 23 FTLLGRLFSL-LP-DFGNIAWRVNLLSALSSALTVLFLFWSITRLLRK 68 (178)
T ss_pred HHHHHHHHHH-cC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555443 33 2222223445778888999998999888876655
No 27
>PF14897 EpsG: EpsG family
Probab=78.69 E-value=25 Score=36.18 Aligned_cols=49 Identities=18% Similarity=0.362 Sum_probs=36.3
Q ss_pred ecccCchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhHHHhHHHH
Q 008307 174 STSFLPSSFSMYAISLASGFFLLEKYAMAVAVSAAGVILGWPFSILAFLPV 224 (570)
Q Consensus 174 strtlpnsf~~~~~~~al~~~l~~~~~~ai~~~~la~i~~~P~a~~l~~Pl 224 (570)
..-.+=+++++...++|+.+..++|..+++.+..+|+.+ +.++++.+|+
T Consensus 109 ~~~~iRq~~A~~~~~~a~~~~~~~k~~~~~~~~lla~~f--H~Saii~l~~ 157 (330)
T PF14897_consen 109 SFNQIRQSLAISFFLLALSYLYKKKWIKFILLVLLAILF--HYSAIIFLPL 157 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 333455778888888888888888888888888888765 6666666666
No 28
>KOG3893 consensus Mannosyltransferase [Carbohydrate transport and metabolism]
Probab=74.31 E-value=72 Score=33.83 Aligned_cols=150 Identities=13% Similarity=0.116 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHHHHHHhhhcCCCCcccccccHH--------HHHHHhhh---cCcccccccCCCCCchhHHHHHHHHHHH
Q 008307 44 GWFVPVFALGMLRYMSATTNIIHDCDEVFNYWE--------PLHYLLYK---SGFQTWEYSSEFALRSYLYILFHELVGR 112 (570)
Q Consensus 44 ~~~~~~~~ll~~R~~~al~~~~~~~DE~fq~~E--------pah~lv~G---~G~~TWE~~p~~~iRS~~~p~l~a~~~~ 112 (570)
+......+.++.|++-..+.+++|-.-.=++.+ -+-+..-| +...|+.|+| +.+++.-
T Consensus 20 ~~~~~llva~l~Ri~Lv~Yg~~hD~~~~v~~TDIDY~VftDaar~Vs~G~sPf~R~TYRYtP-----------~la~ll~ 88 (405)
T KOG3893|consen 20 SFFTHLLVAFLARIALVFYGQLHDRQSAVPYTDIDYKVFTDAARQVSAGDSPFARATYRYTP-----------ILAWLLT 88 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcchhccCCccccceeEeehhhHHhhcCCChhhhhhhcccH-----------HHHHHhc
Confidence 344556667788988887776655433333332 23333333 3456788875 2233211
Q ss_pred HHHHhhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCchhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHH
Q 008307 113 PASWLFAEDKVRVFYAVRLFLGLLSVTTDAVLVVALS-RKYGRRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLAS 191 (570)
Q Consensus 113 ~~~~~l~~~~~~~~~~~Rl~lal~s~~~d~~~~~~~~-~~~g~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al 191 (570)
| .+.+.+. ..+++.+.+-.+.-+..+|... +..+.+-+.....+-+.++.....|||=-.+|+...++++-+
T Consensus 89 p--ni~~~p~-----~GK~Lf~~~Dll~a~L~~kLl~~~~i~~~~a~~~~~fWLlNPl~aiIStRGNaesi~~~lvi~~l 161 (405)
T KOG3893|consen 89 P--NIYLFPA-----WGKLLFAIFDLLIATLIYKLLHMRSISRKQALIYASFWLLNPLTAIISTRGNAESIVAFLVILTL 161 (405)
T ss_pred c--ceecCch-----HHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHhhhhhhcCchheeeecCCchHHHHHHHHHHHH
Confidence 1 0111111 2445555555566667788887 667777777777777889988889999999999988888877
Q ss_pred HHHhccchhHHHHHHHHHHH
Q 008307 192 GFFLLEKYAMAVAVSAAGVI 211 (570)
Q Consensus 192 ~~~l~~~~~~ai~~~~la~i 211 (570)
+...++....|...-++++=
T Consensus 162 yllqK~~v~~A~l~~GlaIh 181 (405)
T KOG3893|consen 162 YLLQKSEVFLAGLAHGLAIH 181 (405)
T ss_pred HHHHHhHHHHHHHHhhheee
Confidence 77666555556555555543
No 29
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.13 E-value=2e+02 Score=33.86 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCch-hHHHHHHHHHhhccceeeecc-cCchHHHHHHHHHHHHHHhc
Q 008307 125 VFYAVRLFLGLLSVTTDAVLVVALSRKYGRR-LASYTLAMLCLTSGCFFASTS-FLPSSFSMYAISLASGFFLL 196 (570)
Q Consensus 125 ~~~~~Rl~lal~s~~~d~~~~~~~~~~~g~~-~a~~~ll~~~~s~~~~~~str-tlpnsf~~~~~~~al~~~l~ 196 (570)
.....|.+.|++++++.-..|-.++. .|.+ .+.+...+...-.-.+...+| .|=+|..+.+++.+++.+.+
T Consensus 118 ~y~~mR~f~a~lgsl~vp~~y~t~~~-~~~s~~aa~l~allv~~dns~~T~sr~ILLDs~Llff~~~~~y~~~r 190 (723)
T KOG3359|consen 118 PYVGMRLFSALLGSLTVPLAYLTLKE-LGFSRLAAALAALLVLFDNSLVTLSRFILLDSMLLFFMAAAVYCFVR 190 (723)
T ss_pred chHhHHHHHHHHHhHHHHHHHHHHHH-hcccHHHHHHHHHHHhhcccchhhhhHHHHhHHHHHHHHHHHHHHHH
Confidence 45679999999999999998887764 4432 222222222222233344455 36677777777777777664
No 30
>KOG2647 consensus Predicted Dolichyl-phosphate-mannose-protein mannosyltransferase [General function prediction only]
Probab=67.29 E-value=77 Score=34.71 Aligned_cols=75 Identities=9% Similarity=0.097 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHhhCc-hhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 008307 136 LSVTTDAVLVVALSRKYGR-RLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFFLLEKYAMAVAVSAAGVI 211 (570)
Q Consensus 136 ~s~~~d~~~~~~~~~~~g~-~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~l~~~~~~ai~~~~la~i 211 (570)
+..++-..+|..++..++. +.++.+.++-++++-.-++++ -.++|+-+.++..++....+++...+..+.+++..
T Consensus 135 ~f~la~~~Lyql~~~~~~~~k~s~~a~liFcfnPAsIF~ts-~YSEsLfa~~s~~Gi~~~~~~~~~~~~~~~~l~~~ 210 (444)
T KOG2647|consen 135 FFMLAAVALYQLTRIILHDPKISFYAALLFCFNPASIFLTA-GYSESLFALFSFLGILFLEKGRQFTGTLLFSLATL 210 (444)
T ss_pred HHHHHHHHHHHHHHHHhcChhHHhhhhheeEecchHhhhhH-HhhHHHHHHHHHHHHHHHhcCCccceehHHHHHHH
Confidence 3445677788888888776 677777777777775555443 45899988999999888887654333333333333
No 31
>PF11847 DUF3367: Domain of unknown function (DUF3367); InterPro: IPR021798 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 667 to 694 amino acids in length.
Probab=65.21 E-value=2.1e+02 Score=33.47 Aligned_cols=87 Identities=9% Similarity=-0.073 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCchhHHH-HHHHHHhhccceeeecccCchH
Q 008307 104 ILFHELVGRPASWLFAEDKVRVFYAVRLFLGLLSVTTDAVLVVALSRK-YGRRLASY-TLAMLCLTSGCFFASTSFLPSS 181 (570)
Q Consensus 104 p~l~a~~~~~~~~~l~~~~~~~~~~~Rl~lal~s~~~d~~~~~~~~~~-~g~~~a~~-~ll~~~~s~~~~~~strtlpns 181 (570)
.+++ ++.+.+.+.+|.+.+ ..=|+..+++-.++-+.++++.++. .|....+. ..+..+.|+.+.-...++.+++
T Consensus 55 LFP~-G~Ff~l~~~lglP~W---i~QRLWwallL~vaf~G~~rLa~~L~igs~~~r~~Aa~~YaLsPr~Lttlg~iSse~ 130 (680)
T PF11847_consen 55 LFPM-GPFFALGDLLGLPDW---ITQRLWWALLLTVAFWGALRLARALGIGSPASRVLAAVAYALSPRVLTTLGAISSET 130 (680)
T ss_pred eccc-hHHHHHhhhccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 3444 343555566676543 3459999998888899999999865 45555544 4455566775544444444444
Q ss_pred HHHHHHHHHHHHH
Q 008307 182 FSMYAISLASGFF 194 (570)
Q Consensus 182 f~~~~~~~al~~~ 194 (570)
+-|.+.=+.+.-+
T Consensus 131 lP~al~PWvLlPl 143 (680)
T PF11847_consen 131 LPMALAPWVLLPL 143 (680)
T ss_pred HHHHHhhHHHHHH
Confidence 4444444444333
No 32
>PF05208 ALG3: ALG3 protein; InterPro: IPR007873 The formation of N-glycosidic linkages of glycoproteins involves the ordered assembly of the common Glc3Man9GlcNAc2 core-oligosaccharide on the lipid carrier dolichyl pyrophosphate. Whereas early mannosylation steps occur on the cytoplasmic side of the endoplasmic reticulum with GDP-Man as donor, the final reactions from Man5GlcNAc2-PP-Dol to Man9GlcNAc2-PP-Dol on the lumenal side use Dol-P-Man []. The ALG3 gene encodes the Dol-P-Man:Man5GlcNAc2-PP-Dol mannosyltransferase.; GO: 0016758 transferase activity, transferring hexosyl groups, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=61.74 E-value=2.4e+02 Score=30.56 Aligned_cols=81 Identities=17% Similarity=0.321 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhhccc-eeeecccCchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHH--
Q 008307 155 RLASYTLAMLCLTSGC-FFASTSFLPSSFSMYAISLASGFFLLEKYAMAVAVSAAGVILGWPFSILAFLPVVFYSLAR-- 231 (570)
Q Consensus 155 ~~a~~~ll~~~~s~~~-~~~strtlpnsf~~~~~~~al~~~l~~~~~~ai~~~~la~i~~~P~a~~l~~Pl~l~~l~~-- 231 (570)
++..|.+.+.+.|-=. -.+.-|.+-+.++|.+.-.|+..+.++|...+..+..+|+ +--..+++.+|-.+..+.+
T Consensus 104 ~~Pp~~~~ll~lSkRlHSI~vLRlFND~~a~~~~~~ai~~~~~~~w~~g~~~yS~av--SIKMN~LL~~Pall~~~l~~~ 181 (368)
T PF05208_consen 104 KLPPWLLILLCLSKRLHSIFVLRLFNDCFAMLFLYAAILLFQRRRWLLGSLLYSLAV--SIKMNALLFAPALLVLLLQSL 181 (368)
T ss_pred CCCchHHHHHHHHHHHHHhhhhheecHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHcC
Confidence 3455666666666422 2456699999999999888888888777666555555544 3456777777766555444
Q ss_pred HHHHHH
Q 008307 232 RFKQAF 237 (570)
Q Consensus 232 ~~~~~l 237 (570)
+..+.+
T Consensus 182 g~~~~~ 187 (368)
T PF05208_consen 182 GLLKTL 187 (368)
T ss_pred CHHHHH
Confidence 444444
No 33
>KOG2575 consensus Glucosyltransferase - Alg6p [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=59.61 E-value=2.7e+02 Score=30.58 Aligned_cols=181 Identities=13% Similarity=0.088 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHhhhcC--CCCcccccccH------HHHHHH------hhh--cCcccccccCCCCCchhHHHHHHHHH
Q 008307 47 VPVFALGMLRYMSATTNI--IHDCDEVFNYW------EPLHYL------LYK--SGFQTWEYSSEFALRSYLYILFHELV 110 (570)
Q Consensus 47 ~~~~~ll~~R~~~al~~~--~~~~DE~fq~~------Epah~l------v~G--~G~~TWE~~p~~~iRS~~~p~l~a~~ 110 (570)
.+...++.+|....+.+- ...|--+=.|- |+.-.+ ..| ...|-|-- +|++=+.-+-+++..+
T Consensus 35 ~i~~~~l~~r~~Isl~pYSG~~~PPmyGDyEAQRHWmEIT~nLPv~qWY~n~t~NDLqYWGL--DYPPLTAYhSyl~G~i 112 (510)
T KOG2575|consen 35 PILLVLLCVRSAISLNPYSGAGSPPMYGDYEAQRHWMEITVNLPVSQWYFNGTHNDLQYWGL--DYPPLTAYHSYLLGII 112 (510)
T ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHhhcCcHHHHhhcCCCCccceecC--CCCcHHHHHHHHHHHH
Confidence 456667788887766542 33332221111 322111 122 26788877 5666666666667766
Q ss_pred HHHHHH--h-h----CCCchHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhcccee-eecccC
Q 008307 111 GRPASW--L-F----AEDKVRVFYAVRLFLG----LLSVTTDAVLVVALSRKYGRRLASYTLAMLCLTSGCFF-ASTSFL 178 (570)
Q Consensus 111 ~~~~~~--~-l----~~~~~~~~~~~Rl~la----l~s~~~d~~~~~~~~~~~g~~~a~~~ll~~~~s~~~~~-~strtl 178 (570)
++.+.. + + |..+...=...|...- ++=.-......+...|..+..-....+.+.+++++... =-.++=
T Consensus 113 ~~f~NP~wvaL~tSRGfES~~hKlfMR~TViisd~liy~Pa~ify~~~~~r~~~~~~~~a~~~~iLl~P~L~LID~GHFQ 192 (510)
T KOG2575|consen 113 GNFINPEWVALHTSRGFESIAHKLFMRSTVIISDLLIYLPALIFYFKWLHRTRSKKSKIAYAALILLYPSLLLIDHGHFQ 192 (510)
T ss_pred HhhcChhHhhhhccCCcccHHHHHHHHHHHHHHhHHHHhhHHHHHHHHhhhccCcccHHHHHHHHHhCCceEEEecCcce
Confidence 554431 1 1 2222221123442211 11111112222223233333222222345555555332 233444
Q ss_pred chHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhHHHhHHHHHHHHHH
Q 008307 179 PSSFSMYAISLASGFFLLEKYAMAVAVSAAGVILGWPFSILAFLPVVFYSLA 230 (570)
Q Consensus 179 pnsf~~~~~~~al~~~l~~~~~~ai~~~~la~i~~~P~a~~l~~Pl~l~~l~ 230 (570)
=||...-+++.|++..+++.+..+.++..+|.-. -+.++-.+.|+..+.+-
T Consensus 193 YNsisLGl~~~ai~~ll~~~~~~as~~F~LAlny-KQMeLY~A~pfF~fLLg 243 (510)
T KOG2575|consen 193 YNSISLGLTLYAIAALLKNFYVLASVLFVLALNY-KQMELYHALPFFAFLLG 243 (510)
T ss_pred echhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH-HHHHHHhchHHHHHHHH
Confidence 6888888999999999988887776666655533 57777777777665554
No 34
>KOG2762 consensus Mannosyltransferase [Carbohydrate transport and metabolism]
Probab=58.44 E-value=1.4e+02 Score=32.21 Aligned_cols=75 Identities=20% Similarity=0.391 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHhhcc-ceeeecccCchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHH
Q 008307 155 RLASYTLAMLCLTSG-CFFASTSFLPSSFSMYAISLASGFFLLEKYAMAVAVSAAGVILGWPFSILAFLPVVFYSLAR 231 (570)
Q Consensus 155 ~~a~~~ll~~~~s~~-~~~~strtlpnsf~~~~~~~al~~~l~~~~~~ai~~~~la~i~~~P~a~~l~~Pl~l~~l~~ 231 (570)
++..|.+.+.++|.= --.+--|.+-+.|+|.+.-.++...+.+|......+..+|+ .--.+.++.+|-.+..+.+
T Consensus 132 ~vPp~vlvL~~lskRiHSIfVLRLFND~fa~lll~~~i~~~l~qkw~~gs~~fSlAv--SVKMNvLLyaPall~~lL~ 207 (429)
T KOG2762|consen 132 RVPPWVLVLLCLSKRIHSIFVLRLFNDPFAMLLLYVAILLFLKQKWLVGSIFFSLAV--SVKMNVLLYAPALLLLLLQ 207 (429)
T ss_pred cCChHHHHHHHHHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHHHHHhHhhhheeeh--hhhhhhHHHHHHHHHHHHH
Confidence 467777777777642 12245689999999999988888888777665554444444 3355777777766655544
No 35
>PF02516 STT3: Oligosaccharyl transferase STT3 subunit; InterPro: IPR003674 N-linked glycosylation is a ubiquitous protein modification, and is essential for viability in eukaryotic cells. A lipid-linked core-oligosaccharide is assembled at the membrane of the endoplasmic reticulum and transferred to selected asparagine residues of nascent polypeptide chains by the oligosaccharyl transferase (OTase) complex []. This family consists of the oligsacharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosccharyl transferase (OTase) complex of proteins and is required for its activity [].; GO: 0004576 oligosaccharyl transferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 3AAG_B 2ZAI_D 2ZAG_A 3RCE_A.
Probab=51.88 E-value=81 Score=34.73 Aligned_cols=119 Identities=13% Similarity=0.037 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhh-hcC-CCCcccccccHHHHHHHhhh-cC----cccccccCCCCCchhHHHHHHHHHHHHHHHhhCCC
Q 008307 49 VFALGMLRYMSAT-TNI-IHDCDEVFNYWEPLHYLLYK-SG----FQTWEYSSEFALRSYLYILFHELVGRPASWLFAED 121 (570)
Q Consensus 49 ~~~ll~~R~~~al-~~~-~~~~DE~fq~~Epah~lv~G-~G----~~TWE~~p~~~iRS~~~p~l~a~~~~~~~~~l~~~ 121 (570)
+......|+.... ..+ +...|.+||+.+.....-+| +. ..++-|-|. +-+.--.|++.... ..+..+++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~Dpyy~~r~~~~~~~~G~~~~~~~fd~~~~yP~-G~~i~~~pl~~~l~-~~~~~~~~~~ 88 (483)
T PF02516_consen 11 FRLAFYYRVFSVFDGGPYLNEFDPYYHYRLIEYIVNNGIFPFYNWFDPFTWYPW-GRPIDWPPLFPYLT-AAFYAILGGF 88 (483)
T ss_dssp HHHHHHHHHHHHTHHHHHHSS-GGGEETTEE--S-HHHHHHHHHHHHHHS---T-TS---TT-HHHHHH-HHHHHS-SS-
T ss_pred HHHHHHhceeeeeeceeeeeCCCHHHHHHHHHHHHHcCCCcccCcCCccccCCC-CCccCcccHHHHHH-HHHHHHHHHh
Confidence 3334444543332 223 68999999998654444444 22 222222242 22222224332221 2222222221
Q ss_pred ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhcc
Q 008307 122 KV-RVFYAVRLFLGLLSVTTDAVLVVALSRKYGRRLASYTLAMLCLTSG 169 (570)
Q Consensus 122 ~~-~~~~~~Rl~lal~s~~~d~~~~~~~~~~~g~~~a~~~ll~~~~s~~ 169 (570)
.. ....+.-.+-.++++++-.-.|-..++..|+..|....++.+.+++
T Consensus 89 ~~~~l~~v~~~~ppvl~~L~vi~~y~~~~~~~~~~~Gl~aA~l~a~~p~ 137 (483)
T PF02516_consen 89 GPVSLYEVAFWLPPVLGALTVIPVYLLGRRLGGRKAGLLAAFLLAISPG 137 (483)
T ss_dssp HH----HHHHHHHHHHGGGGHHHHHHHHHHTT-HHHHHHHHHHHTTSHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhHH
Confidence 11 1111122223334444444455555666677888888888888886
No 36
>KOG2292 consensus Oligosaccharyltransferase, STT3 subunit [Posttranslational modification, protein turnover, chaperones]
Probab=49.74 E-value=1.4e+02 Score=33.80 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhh--cCCCCcccccccHHHHHHHhhh-cCcccccc----cC-CCCCchhHHHHH--HHHHHHHHHHhhCC
Q 008307 51 ALGMLRYMSATT--NIIHDCDEVFNYWEPLHYLLYK-SGFQTWEY----SS-EFALRSYLYILF--HELVGRPASWLFAE 120 (570)
Q Consensus 51 ~ll~~R~~~al~--~~~~~~DE~fq~~Epah~lv~G-~G~~TWE~----~p-~~~iRS~~~p~l--~a~~~~~~~~~l~~ 120 (570)
+-++.|+++.+= +.|+.-|-.|||=.-.|..-.| |.+..|-= -| +--+-.-+||.+ .++..+...+.++.
T Consensus 32 ~~fssRLFaVirfESiIHEFDP~FNYR~T~~l~~~GfY~F~NWFDdRaWYPLGRiiGGTvYPGLmiTsg~I~~~L~~L~i 111 (751)
T KOG2292|consen 32 LSFSSRLFAVIRFESIIHEFDPWFNYRATRFLVENGFYKFLNWFDDRAWYPLGRIIGGTVYPGLMITSGLIYWVLHFLNI 111 (751)
T ss_pred HHHHHHHHHHHHHHHHhhccCchhhhHHHHHHHHhhHHHHHhhcccccccccceeecccccchHHHHHHHHHHHHHHccc
Confidence 334567777654 3488999999998766655556 34444421 11 112223345554 33444444444442
Q ss_pred C----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhccceeeecc--cCchHHHHHHHHHHHHHH
Q 008307 121 D----KVRVFYAVRLFLGLLSVTTDAVLVVALSRKYGRRLASYTLAMLCLTSGCFFASTS--FLPSSFSMYAISLASGFF 194 (570)
Q Consensus 121 ~----~~~~~~~~Rl~lal~s~~~d~~~~~~~~~~~g~~~a~~~ll~~~~s~~~~~~str--tlpnsf~~~~~~~al~~~ 194 (570)
+ ..-+|.+| ++|.++-+..|-+.++..+...+..+..+.+..+|---=|++ .=-+.++..+.++..+.|
T Consensus 112 ~v~Ir~VCVflAP-----~FSg~TsiaTY~ltkEl~~~gaGL~AA~fiaivPgYiSRSVAGSYDNE~IAIfal~~T~ylw 186 (751)
T KOG2292|consen 112 PVHIRNVCVFLAP-----LFSGLTSIATYLLTKELKSAGAGLLAAAFIAIVPGYISRSVAGSYDNEGIAIFALLFTYYLW 186 (751)
T ss_pred ceeehheeeEech-----hhhchHHHHHHHHHHHHhcccccHHHHHHHhhCcccccccccccccchHHHHHHHHHHHHHH
Confidence 1 22233333 345556666666666666666666666666665532221211 112234444444555555
Q ss_pred hc
Q 008307 195 LL 196 (570)
Q Consensus 195 l~ 196 (570)
.+
T Consensus 187 iK 188 (751)
T KOG2292|consen 187 IK 188 (751)
T ss_pred HH
Confidence 54
No 37
>PF06728 PIG-U: GPI transamidase subunit PIG-U; InterPro: IPR009600 Many eukaryotic proteins are anchored to the cell surface via glycosylphosphatidylinositol (GPI), which is posttranslationally attached to the C terminus by GPI transamidase. The mammalian GPI transamidase is a complex of at least four subunits, GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent a fifth subunit in this complex and may be involved in the recognition of either the GPI attachment signal or the lipid portion of GPI [].; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=49.30 E-value=3.7e+02 Score=29.04 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=56.5
Q ss_pred hHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhHHHhHHHHHHHHH
Q 008307 156 LASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFFLLEKYAMAVAVSAAGVILGWPFSILAFLPVVFYSL 229 (570)
Q Consensus 156 ~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~l~~~~~~ai~~~~la~i~~~P~a~~l~~Pl~l~~l 229 (570)
.+.....+-++++.....++.--..+|+..+.+.+++...+++...+.+.+|+++-. .+..+.+..|+.+...
T Consensus 122 ~~~lv~~~YLfNP~tIlscva~ST~~f~nl~i~~sl~~a~~g~~~~s~i~lAlatyl-SlYpi~Ll~Plll~l~ 194 (382)
T PF06728_consen 122 SPWLVAAFYLFNPLTILSCVALSTTVFTNLFILLSLYFAVKGNVFLSAISLALATYL-SLYPILLLPPLLLLLY 194 (382)
T ss_pred chHHHHHHHHHCHHHHHHHHhcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHH
Confidence 455566677788887777777778889989999999888888888888888888875 5777777887775443
No 38
>KOG2552 consensus Major facilitator superfamily permease - Cdc91p [General function prediction only]
Probab=44.74 E-value=3.1e+02 Score=29.69 Aligned_cols=73 Identities=8% Similarity=0.097 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhHHHhHHHHHHHH
Q 008307 155 RLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFFLLEKYAMAVAVSAAGVILGWPFSILAFLPVVFYS 228 (570)
Q Consensus 155 ~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~l~~~~~~ai~~~~la~i~~~P~a~~l~~Pl~l~~ 228 (570)
.++.+..++.++++.+...+....+..++...+...++....++...+.+..++++.. .+.++.+.+|+.+..
T Consensus 144 ~i~~~v~l~Yl~NPlTilSCi~~St~~I~N~~v~~~ly~av~~~~~l~a~~la~~t~~-s~yp~~L~~P~l~~L 216 (388)
T KOG2552|consen 144 PIGDLVALLYLFNPLTILSCIGLSTTVIENFAVAVSLYGAVTGRVPLAAFGLAIATHL-SLYPATLTIPLLFLL 216 (388)
T ss_pred cHHHHHHHHHHhCceeeeeeccccchHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhc-ccchHHHHHHHHHHH
Confidence 3566777788899988888887778888888888888888888887777778888764 788889999987644
No 39
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=33.92 E-value=7.2e+02 Score=27.89 Aligned_cols=77 Identities=12% Similarity=0.150 Sum_probs=50.9
Q ss_pred chhHHHHHHHHHhhccceee-ecccCchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHH
Q 008307 154 RRLASYTLAMLCLTSGCFFA-STSFLPSSFSMYAISLASGFFLLEKYAMAVAVSAAGVILGWPFSILAFLPVVFYSLAR 231 (570)
Q Consensus 154 ~~~a~~~ll~~~~s~~~~~~-strtlpnsf~~~~~~~al~~~l~~~~~~ai~~~~la~i~~~P~a~~l~~Pl~l~~l~~ 231 (570)
.+......++.+++++.... -.++==|++..-++++|++...+++...+..+.+++.-+ -+..+-.+.|...+++.+
T Consensus 132 ~~~~~~~~~~~l~~PgLilIDH~HFQYN~~~lGl~l~si~~~~~~~~l~~a~~F~~~Ln~-Kqm~LY~Ap~~f~yLL~~ 209 (469)
T PF03155_consen 132 SKQRFIALLLILLNPGLILIDHGHFQYNGFLLGLLLLSIAALIRGRYLLGAILFSLLLNF-KQMFLYYAPAFFVYLLGS 209 (469)
T ss_pred hhHHHHHHHHHHHCchHHhhhhhhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33444555566677764321 123336889999999999999888887766665655544 677777777777776654
No 40
>PF05007 Mannosyl_trans: Mannosyltransferase (PIG-M); InterPro: IPR007704 PIG-M has a DXD motif. The DXD motif is found in many glycosyltransferases that utilise nucleotide sugars. It is thought that the motif is involved in the binding of a manganese ion that is required for association of the enzymes with nucleotide sugar substrates [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=33.35 E-value=3e+02 Score=28.30 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=42.3
Q ss_pred ecccCchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhHHHhHHHHHHHH
Q 008307 174 STSFLPSSFSMYAISLASGFFLLEKYAMAVAVSAAGVILGWPFSILAFLPVVFYS 228 (570)
Q Consensus 174 strtlpnsf~~~~~~~al~~~l~~~~~~ai~~~~la~i~~~P~a~~l~~Pl~l~~ 228 (570)
|||=-++|+-..+++..++...++|...+..+.|+|+=++ =..++.++|+.++.
T Consensus 2 STRGnaEsl~~~lVl~~l~~l~~~~~~~Aa~~lGlaVHfK-IYPiIY~~~~~l~l 55 (259)
T PF05007_consen 2 STRGNAESLLCFLVLLTLYFLLKGRWFLAAILLGLAVHFK-IYPIIYALPILLYL 55 (259)
T ss_pred CCCcchHHHHHHHHHHHHHHHHcCChhHHHHHhhHHHHhh-hccHHHHHHHHHHH
Confidence 6787888888888888888888899999999999888663 34456677777654
No 41
>COG5650 Predicted integral membrane protein [Function unknown]
Probab=33.31 E-value=1.7e+02 Score=33.15 Aligned_cols=151 Identities=9% Similarity=0.091 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 008307 129 VRLFLGLLSVTTDAVLVVALSRKYGRRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFFLLEKYAMAVAVSAA 208 (570)
Q Consensus 129 ~Rl~lal~s~~~d~~~~~~~~~~~g~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~l~~~~~~ai~~~~l 208 (570)
.-..+|+++..+.++.-+ +..|. +.|-..+.+.|. +.-...-+-+++..+.+.+.++-. ++|-..++.+.|+
T Consensus 174 ~AF~~A~~~l~~i~~~r~---gl~~~--~~~~valv~as~-~v~f~v~~~~DtI~~ffla~a~v~--r~rP~lAGvl~Gl 245 (536)
T COG5650 174 LAFLLALIWLLVIYFIRK---GLAGS--RVLDVALVAASP-LVGFAVFTVFDTIWAFFLAAALVC--RGRPKLAGVLIGL 245 (536)
T ss_pred HHHHHHHHHHHHHHHHHh---ccccc--ceeeeeeeeccc-eEEEEEecchhHHHHHHHHHHHHh--cCCchHHHHHHHH
Confidence 334455555555544322 11122 333334455555 444455566777776666655544 7888999999999
Q ss_pred HHHhhhhhHHHhHHHHHHHHHHH--HHHHHH---HHHHHHHHHHHHHHHHHHhhhccccch-----hhhhhhhhhhcCCC
Q 008307 209 GVILGWPFSILAFLPVVFYSLAR--RFKQAF---LAGAATSVTLLALSVFVDYQYYRRWTS-----SVLNLVVYNVVGGG 278 (570)
Q Consensus 209 a~i~~~P~a~~l~~Pl~l~~l~~--~~~~~l---~~~i~~~l~~l~~~v~iDs~fyg~~~~-----~~lN~~~yNv~~~~ 278 (570)
|.-+ -+..+++..|+ ++.++| +.+... ...+.+.+++-+..+..|=..|-+.+. ..-+--.+|++.+.
T Consensus 246 s~a~-K~~P~Ivl~pl-l~~~~keyg~~~a~~f~~~aa~t~lLvN~PfiI~~P~aw~~sil~~~~r~~~~~~~~~sI~s~ 323 (536)
T COG5650 246 SSAF-KQIPLIVLPPL-LYLIYKEYGLRPAIKFIATAAITWLLVNLPFIILGPRAWVESILLFARRGLIGVGIGISIPSF 323 (536)
T ss_pred HHHh-hcCchhhHHHH-HHHHHHhcCcchHHHHHHHHHHHHHHHcCceEEechHHHHHHHHhHHhcCCcccccceecccc
Confidence 8876 56655555544 445555 333222 222222222223333333333322111 11122234444444
Q ss_pred CCccccccchhH
Q 008307 279 ESHLYGIEGPLY 290 (570)
Q Consensus 279 gs~~yGt~Pw~~ 290 (570)
.-.|+..|-++
T Consensus 324 -aG~~~~~P~~F 334 (536)
T COG5650 324 -AGFYAVDPLLF 334 (536)
T ss_pred -cccccccceEE
Confidence 55889999874
No 42
>COG5305 Predicted membrane protein [Function unknown]
Probab=29.59 E-value=9.1e+02 Score=27.72 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhccceeeecccCchHHHHHHHHHHHHHHhc
Q 008307 126 FYAVRLFLGLLSVTTDAVLVVALSRKYGRRLASYTLAMLCLTSGCFFASTSFLPSSFSMYAISLASGFFLL 196 (570)
Q Consensus 126 ~~~~Rl~lal~s~~~d~~~~~~~~~~~g~~~a~~~ll~~~~s~~~~~~strtlpnsf~~~~~~~al~~~l~ 196 (570)
....|..-+++++++-...|...+..+|.+.+..+..+.+.|+.--+++--.=+.++++..++++....++
T Consensus 116 ~~~~Rsls~L~~~~ai~~~y~l~r~l~~~~~a~la~~~~AisP~~i~~~qe~R~y~L~~~~~lis~~~Ll~ 186 (552)
T COG5305 116 LLASRSLSALLSALAIPLVYWLGRELFGSTTALLAAALMAISPFHIFYSQEARSYALAVATTLISATLLLR 186 (552)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999988888888875444442222455666666666665553
No 43
>PRK13375 pimE mannosyltransferase; Provisional
Probab=26.22 E-value=9.1e+02 Score=26.60 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 008307 180 SSFSMYAISLASGFFLLEKYAMAVAVSAAGVILGWPFSILAFLPVVFYSLAR-RFKQAFLAGAATSVT 246 (570)
Q Consensus 180 nsf~~~~~~~al~~~l~~~~~~ai~~~~la~i~~~P~a~~l~~Pl~l~~l~~-~~~~~l~~~i~~~l~ 246 (570)
|.+-|.++... .+++|...++.+++++.-+ -++.+++ .++.+.+ +|+.++ .++.+++.
T Consensus 156 N~lL~~Lv~~d---ll~~r~~~aGvliGLAaaI-KlTPavf----~l~lL~~RrWra~~-~A~~t~~~ 214 (409)
T PRK13375 156 NVFLMLAVLYA---VYSSRWWLSGLLVGLAAGV-KLTPAIT----GLYFLGARRWAAAA-FSAVVFLA 214 (409)
T ss_pred HHHHHHHHHHH---HhcCCccHHHHHHHHHHHh-hhhhHHH----HHHHHHhCHHHHHH-HHHHHHHH
Confidence 66655555533 3355656678888887754 5665443 3445555 666554 33333333
No 44
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=23.18 E-value=8.2e+02 Score=27.13 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=12.9
Q ss_pred CchhHHHHHHHHHhhccceeee
Q 008307 153 GRRLASYTLAMLCLTSGCFFAS 174 (570)
Q Consensus 153 g~~~a~~~ll~~~~s~~~~~~s 174 (570)
|.....+++++..+|=|+-|..
T Consensus 332 GlAl~lFYlLLLSlSEhi~F~~ 353 (430)
T PF06123_consen 332 GLALVLFYLLLLSLSEHIGFNL 353 (430)
T ss_pred HHHHHHHHHHHHHHHhhhchHH
Confidence 4445556666666666655544
No 45
>PRK11715 inner membrane protein; Provisional
Probab=22.73 E-value=7.8e+02 Score=27.33 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=14.7
Q ss_pred CchhHHHHHHHHHhhccceeeec
Q 008307 153 GRRLASYTLAMLCLTSGCFFAST 175 (570)
Q Consensus 153 g~~~a~~~ll~~~~s~~~~~~st 175 (570)
|...+.+++++.+.|=|+-|...
T Consensus 338 GlAl~lFYLLLLSlSEHigF~~A 360 (436)
T PRK11715 338 GLALVLFYLLLLSLSEHIGFTLA 360 (436)
T ss_pred HHHHHHHHHHHHHHHhhhchHHH
Confidence 55556666777777776666543
Done!