Query 008307
Match_columns 570
No_of_seqs 240 out of 850
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 23:06:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008307.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008307hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 8.7 1.8E+02 0.013 16.6 3.1 12 406-417 14-25 (27)
2 d2cu8a1 g.39.1.3 (A:8-37) Cyst 8.0 36 0.0026 20.7 -0.1 10 434-443 18-27 (30)
3 d1deka_ c.37.1.1 (A:) Deoxynuc 2.7 4.2E+02 0.03 21.9 3.3 13 500-512 213-225 (241)
4 d1eu3a1 b.40.2.2 (A:2A-96) Str 2.6 2.5E+02 0.018 21.0 1.2 12 502-513 43-54 (97)
5 d1sr3a_ b.40.9.1 (A:) Heme cha 2.5 1.5E+02 0.011 23.2 -0.3 33 463-498 65-98 (114)
6 d2j4wd1 g.61.1.1 (D:421-454) A 2.2 2.9E+02 0.021 16.6 0.9 15 493-509 15-29 (34)
7 d1pjqa1 c.2.1.11 (A:1-113) Sir 2.0 2.9E+02 0.021 20.4 0.9 11 498-508 103-113 (113)
8 d1j26a_ d.50.4.1 (A:) Ict1 pro 1.9 6.2E+02 0.045 19.2 2.9 21 446-466 13-34 (112)
9 d2dara2 g.39.1.3 (A:8-52) PDZ 1.9 2.7E+02 0.02 18.1 0.4 7 436-442 35-41 (45)
10 d1xmeb2 f.17.2.1 (B:3-36) Bact 1.9 7.4E+02 0.054 14.3 2.4 14 181-194 20-33 (34)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.67 E-value=1.8e+02 Score=16.58 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=8.2
Q ss_pred HHHHhhcCCchh
Q 008307 406 TFSLVNGYAAPI 417 (570)
Q Consensus 406 ~~~l~~~Y~ap~ 417 (570)
.++-|+||.-|-
T Consensus 14 f~aayqqykrpn 25 (27)
T d2e74g1 14 FYAAYQQYKRPN 25 (27)
T ss_dssp HHHHHHHTTSCC
T ss_pred HHHHHHHhcCCC
Confidence 556678887664
No 2
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.04 E-value=36 Score=20.73 Aligned_cols=10 Identities=40% Similarity=1.219 Sum_probs=8.4
Q ss_pred ccccccccee
Q 008307 434 VVCVGSEWHR 443 (570)
Q Consensus 434 ~vC~g~ewyr 443 (570)
..|.||.||+
T Consensus 18 ~~~lgk~WHk 27 (30)
T d2cu8a1 18 VSSLGKDWHK 27 (30)
T ss_dssp EEETTEEEET
T ss_pred hccCCccccc
Confidence 3599999997
No 3
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}
Probab=2.73 E-value=4.2e+02 Score=21.90 Aligned_cols=13 Identities=0% Similarity=0.023 Sum_probs=10.4
Q ss_pred CCCCccEEEEccC
Q 008307 500 DVEACTFLVELQL 512 (570)
Q Consensus 500 ~~~~Cdy~vd~~~ 512 (570)
+...|||+||.|.
T Consensus 213 ~~~~aD~vI~N~g 225 (241)
T d1deka_ 213 PIRDGDLVITNDG 225 (241)
T ss_dssp CCCTTCEEEECCS
T ss_pred ccCCCCEEEECCC
Confidence 4468999999874
No 4
>d1eu3a1 b.40.2.2 (A:2A-96) Streptococcal superantigen Smez-2 {Streptococcus pyogenes [TaxId: 1314]}
Probab=2.60 E-value=2.5e+02 Score=21.02 Aligned_cols=12 Identities=17% Similarity=0.570 Sum_probs=10.4
Q ss_pred CCccEEEEccCC
Q 008307 502 EACTFLVELQLN 513 (570)
Q Consensus 502 ~~Cdy~vd~~~~ 513 (570)
+.|||.||.+++
T Consensus 43 ~~~~~yvdSevs 54 (97)
T d1eu3a1 43 DARDFFINSEMD 54 (97)
T ss_dssp TTEEEEEEEECC
T ss_pred ccceEEEehhhh
Confidence 579999999885
No 5
>d1sr3a_ b.40.9.1 (A:) Heme chaperone CcmE {Escherichia coli [TaxId: 562]}
Probab=2.47 E-value=1.5e+02 Score=23.17 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=19.0
Q ss_pred CCCCCCccccccCCCCCcCCCCC-ccccCcccccccc
Q 008307 463 GFRGLLPLPFNSTLGGTSAAPSY-FNNENKASDQQFL 498 (570)
Q Consensus 463 ~f~G~lP~~f~~~~~~t~~~p~~-~Nd~N~ee~~~y~ 498 (570)
.|+|.||.-|.|+. ..+-+| |+|.+....++..
T Consensus 65 ~Y~GilPdlF~eg~---~VVveG~~~~~~~f~A~~vl 98 (114)
T d1sr3a_ 65 SYEGILPDLFREGQ---GVVVQGELEKGNHILAKEVL 98 (114)
T ss_dssp EEESCCCTTCCTTS---EEEEEEEECSSSEEEESSCB
T ss_pred EecCCCChhhcCCC---eEEEEEEECCCCEEEEEEEE
Confidence 58899999998852 223333 4444444444433
No 6
>d2j4wd1 g.61.1.1 (D:421-454) Apical membrane antigen 1 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=2.18 E-value=2.9e+02 Score=16.57 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=10.4
Q ss_pred ccccccCCCCCccEEEE
Q 008307 493 SDQQFLQDVEACTFLVE 509 (570)
Q Consensus 493 e~~~y~~~~~~Cdy~vd 509 (570)
||++. +-+.|+|.|-
T Consensus 15 ep~~i--s~stcnfyvc 29 (34)
T d2j4wd1 15 EPERI--SESTCNFYVC 29 (34)
T ss_dssp CCEEE--ESSSCEEEEC
T ss_pred Chhhc--ccCccceEEE
Confidence 56653 4578999874
No 7
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}
Probab=2.01 E-value=2.9e+02 Score=20.42 Aligned_cols=11 Identities=18% Similarity=0.534 Sum_probs=8.1
Q ss_pred cCCCCCccEEE
Q 008307 498 LQDVEACTFLV 508 (570)
Q Consensus 498 ~~~~~~Cdy~v 508 (570)
+++++.|||+|
T Consensus 103 ~D~p~~~dFi~ 113 (113)
T d1pjqa1 103 VDAPKAASFIM 113 (113)
T ss_dssp TTCTTSSSEEC
T ss_pred CCChhhCCEEC
Confidence 34669999975
No 8
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.93 E-value=6.2e+02 Score=19.18 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=15.6
Q ss_pred CCcccCCCCceeEEeccC-CCC
Q 008307 446 SSFFIPNYVGEVRWLDDG-FRG 466 (570)
Q Consensus 446 ssfflp~~~~~l~Fl~s~-f~G 466 (570)
.+-.+|.+.++.+|.+|+ ..|
T Consensus 13 ~~~~Ip~~~i~~~f~RSsGPGG 34 (112)
T d1j26a_ 13 ASSYIPLDRLSISYCRSSGPGG 34 (112)
T ss_dssp SCCCCCTTTSEEEEECCCCSSS
T ss_pred hcCccCHHHeEEEEEEcCCCCC
Confidence 344789887999999975 444
No 9
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.88 E-value=2.7e+02 Score=18.11 Aligned_cols=7 Identities=43% Similarity=1.398 Sum_probs=4.4
Q ss_pred cccccce
Q 008307 436 CVGSEWH 442 (570)
Q Consensus 436 C~g~ewy 442 (570)
=.||-||
T Consensus 35 Algk~WH 41 (45)
T d2dara2 35 ALGKSWH 41 (45)
T ss_dssp ETTEEEC
T ss_pred ecCCccC
Confidence 3467776
No 10
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=1.87 E-value=7.4e+02 Score=14.32 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 008307 181 SFSMYAISLASGFF 194 (570)
Q Consensus 181 sf~~~~~~~al~~~ 194 (570)
|++|.++.+++-.+
T Consensus 20 slamlfvfialiay 33 (34)
T d1xmeb2 20 SLAMLFVFIALIAY 33 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Done!