Query 008309
Match_columns 570
No_of_seqs 147 out of 321
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 23:09:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kal_A Homoglutathione synthet 100.0 4E-175 1E-179 1400.3 40.9 475 90-570 24-499 (499)
2 2hgs_A Protein (glutathione sy 100.0 1E-165 4E-170 1324.6 38.4 457 97-570 8-474 (474)
3 1m0w_A Glutathione synthetase; 100.0 2E-165 8E-170 1326.7 35.7 459 96-570 4-491 (491)
4 2wyo_A Glutathione synthetase; 100.0 3E-160 1E-164 1296.3 30.5 457 100-570 14-561 (562)
5 3n6x_A Putative glutathionylsp 98.7 3.2E-08 1.1E-12 107.1 11.6 357 98-506 33-417 (474)
6 2vob_A Trypanothione synthetas 97.8 6.3E-05 2.2E-09 84.4 10.9 181 149-359 267-456 (652)
7 2io8_A Bifunctional glutathion 97.4 0.00034 1.1E-08 78.1 9.1 180 149-359 254-440 (619)
8 1gsa_A Glutathione synthetase; 70.2 46 0.0016 31.7 12.1 42 455-499 156-202 (316)
9 1z2n_X Inositol 1,3,4-trisphos 28.5 63 0.0022 31.4 5.2 58 194-258 259-316 (324)
10 2fb9_A D-alanine:D-alanine lig 26.5 39 0.0013 33.5 3.3 47 191-245 248-295 (322)
11 2wx4_A DCP1, decapping protein 24.7 27 0.00091 26.6 1.3 26 178-203 13-39 (46)
12 1e4e_A Vancomycin/teicoplanin 22.1 58 0.002 32.4 3.6 48 191-244 267-314 (343)
13 2wx3_A MRNA-decapping enzyme 1 21.6 31 0.0011 26.7 1.1 26 179-204 16-42 (51)
14 4fu0_A D-alanine--D-alanine li 21.6 40 0.0014 34.0 2.3 44 191-239 274-317 (357)
15 1rso_B MLIN-2/CASK, peripheral 21.2 1.6E+02 0.0055 22.6 5.2 40 160-204 8-53 (56)
16 2ip4_A PURD, phosphoribosylami 21.0 1.1E+02 0.0036 31.2 5.4 56 454-512 137-197 (417)
17 3se7_A VANA; alpha-beta struct 20.8 54 0.0018 32.8 3.1 43 191-238 267-309 (346)
18 1wrd_A TOM1, target of MYB pro 20.3 2.2E+02 0.0076 24.3 6.5 50 152-206 46-95 (103)
No 1
>3kal_A Homoglutathione synthetase; dimer, ATP-grAsp domain; HET: ADP HGS; 1.90A {Glycine max} PDB: 3kak_A* 3kaj_A*
Probab=100.00 E-value=3.5e-175 Score=1400.33 Aligned_cols=475 Identities=70% Similarity=1.146 Sum_probs=456.7
Q ss_pred ccccc-CCCCCCHHHHHHHHHHHHHHHHHcceeeeecCCcCCCCCCCcceeeeeeeecCCCCCHHHHHHHHHHhhHHHHH
Q 008309 90 TKEAL-NLQSVDQDLVQKMVYDALVWSSLHGLVVGDRSVQRSGKVPGVGLVHAPFALLPVSFPESHFREACELAPIFNEL 168 (570)
Q Consensus 90 ~~~~~-~~~~l~~~~~~~L~~~a~dwa~~hGl~~~~~~~~~~~~~~~~~~~~aPftL~PspfPr~~F~~A~~lq~~~N~L 168 (570)
++|.+ +||.++++++++|+++|+|||++|||+|++++.+.++..+++.++|||||||||||||++|++|+++|++||+|
T Consensus 24 ~~~~~~~~~~~~~~~~~~l~~~a~dwal~hGl~~~~~~~~~~~~~~~~~~~~aPftL~PspfPr~~fe~a~~vq~~~NeL 103 (499)
T 3kal_A 24 AAPPLFDYHRIDQKLLQNIVYDALVWSTLNCLLVGDKSVQRSGRVPGVGLVHLPLSLLPGPFPESHWKQGCELAPIFNEL 103 (499)
T ss_dssp -CCCCCCTTSSCHHHHHHHHHHHHHHHHHTTCEEECTTSTTTTTSTTSSEEECCEESSCEEECHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccCCHHHHHHHHHHHHHHHHHcCeEEecCCCccccccccccceecceEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 67755 99999999999999999999999999999998877767778889999999999999999999999999999999
Q ss_pred HHHhhCCHHHHHHHHhcccCCChhhHHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeeceecccccchhh
Q 008309 169 VDRVSLDGKFLQESLSRTKKVDPFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTISSSFSGLSCL 248 (570)
Q Consensus 169 ~~rVS~D~~fL~~~l~~~~k~D~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTISaSFggLs~~ 248 (570)
||+||+|++||+++|++++++|+||++||+||++|+++|++|+++|||||||||+|.+++++||||||||||||||||++
T Consensus 104 ~~~vs~D~~fL~~~l~~~~~~D~Ft~~L~~I~~~v~~~g~~q~l~Lgl~RSDYMld~~~~~lkQVEfNTIsaSFggls~~ 183 (499)
T 3kal_A 104 VDRVSLDGKFLQESLSRTKNADEFTSRLLDIHSKMLQINKKEDIRMGIVRSDYMIDEKTKSLLQIEMNTISTSFALIGCL 183 (499)
T ss_dssp HHHHHTCHHHHHHHTHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEETTTTEEEEEEEECSSCCCHHHHHH
T ss_pred HHHHhcCHHHHHHHHHhhcCcCHHHHHHHHHHHHHHhcCCCCceeeeeeehhhhcCCCCCceEEEEeechhhhcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred hHHHHHHHHHhhccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCCcEEEEEEeCCCCccchhhHHHHHHHhhCCceEE
Q 008309 249 VSELHRSLLIHYGERLGLDSKKVPGNSAVIQFAEAMAKAWTEYNNARALVLVVVQSEEHNMYDQHWLSSVLKERHNVTTI 328 (570)
Q Consensus 249 vs~LHr~l~~~~~~~~~~~~~~lp~N~al~~la~gLa~A~~~Y~~~~avVLfVVq~~ErNi~DQr~lE~~L~~~~gI~vi 328 (570)
+++|||||++.|+....++..++|+|++++++|+|||+||++|++++++||||||++|||+||||+|||+|+++|||+|+
T Consensus 184 v~~lHr~l~~~~~~~~~~~~~~lp~N~a~~~la~gla~A~~~Y~~~~a~VLfVVQ~~ErNifDQr~lE~~L~~~~gI~vi 263 (499)
T 3kal_A 184 MTGLHKSLLSQYGKFLGLNSNRVPANNAVDQSAEALAKAWSEYNNPRAAILVVVQVEERNMYEQHYISALLREKHHIRSI 263 (499)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGSCCCCHHHHHHHHHHHHHHHHTCTTCEEEEEECSSCTTHHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHhcccccccccccCCCChhHHHHHHHHHHHHHHhCCCCcEEEEEEcCCCccHHhHHHHHHHHHHhCCCcEE
Confidence 99999999998876655556689999999999999999999999999999999999999999999999999999999999
Q ss_pred EechhhHhhcceecCCCceEEcCeEEEEEEeecCCCCCCCCChhhHHHHHhhhhcccccCCchhhhhccchHHHHHhcCC
Q 008309 329 RKTLAEIDAEGELLPDGTLLVGGQVIAVVYFRAGYAPTDYPSESEWRARLLMEQSSAVKCPSISYHLAGTKKIQQELAKP 408 (570)
Q Consensus 329 R~Tl~el~~~~~l~~~~~L~vdg~EVaVVYfRaGY~P~dYpse~eW~aRl~LE~S~AIKCPsI~~qLaGtKKVQQ~La~p 408 (570)
|+||+||.++++++++++|+++|.||||||||+||+|+|||+|++|++|++||+|+|||||||+|||||||||||+|++|
T Consensus 264 R~t~~el~~~~~l~~~~~L~~~g~eVaVVYfRaGY~P~dYpse~~W~aRl~lE~S~AIKCPsI~~qLaGtKKVQQ~La~p 343 (499)
T 3kal_A 264 RKTLTEIDQEGKILPDGTLSVDGQAISVVYFRAGYTPKDYPSESEWRARLLMEQSSAIKCPTISYHLVGTKKIQQELAKP 343 (499)
T ss_dssp EECHHHHHHHEEECTTSCEEETTEEEEEEEEESCSSGGGCSSHHHHHHHHHHHHSSSEEETCHHHHHHTSHHHHHHTTST
T ss_pred EEEHHHHhhhceeCCCCeeEEcceEEEEEEeecCcCcccCCCHHHHHHHHHHHhcCcccCCCHHHHHhhhHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhccccCCHHHHHHHHHhccccccCCcHHHHHHhhcCCCCceecCCCcCCCccccchhHHHHHHhhccCCCcc
Q 008309 409 NVLESFLLVSRFLDNKEDIAKVRKCFAGLWSLDDSEIVSKAIENPELYVMKPQREGGGNNIYGEDVKETLLRLKKDGTDE 488 (570)
Q Consensus 409 gvLe~~~~~~rFl~~~~~~~~lr~tFa~lysLd~~~~v~~A~~~P~~yVLKPQREGGGNNiYg~dI~~~L~~l~~~~~~e 488 (570)
++|| ||+++++++++||+||++|||||+++++++|+++|++||||||||||||||||+||+++|++|+++|++|
T Consensus 344 ~vLe------rFl~~~~~~~~lr~tFa~ly~LD~~~~~~~a~~~p~~~VLKPQREGGGNNiYg~dI~~~L~~l~~~~~~e 417 (499)
T 3kal_A 344 GVLE------RFVENKDHIAKLRACFAGLWSLEDSDIVKKAIENPELFVMKPQREGGGNNIYGDELRETLLKLQEAGSQE 417 (499)
T ss_dssp TTHH------HHCCCHHHHHHHHHHCCCEEETTCTTHHHHHHHCGGGEEEECSCCSSSCCBCHHHHHHHHHHCCC-----
T ss_pred hHHH------HhcCCHHHHHHHHHHhhccCCCCchHHHHhhhhCHHHeeecccccCCccccchHHHHHHHHhcCccchhh
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999877889
Q ss_pred ccceeeccccCCCCcceEEEecCccccccceeccceeEEEEecCcEEEeeccceEEEeecCCCCCCCceeeccccccccc
Q 008309 489 DAAYILMQRIFPSVSLTFLMRDGICHKDHAISELGIYGAYLRIKEKVIMNEQSGYLMRTKVASSNEGGVAAGFAVLDSLY 568 (570)
Q Consensus 489 ~~aYILMerI~Pp~~~n~lvR~g~~~~~~~VSELGIfG~~l~~~~~ii~N~~~GyLlRTK~~~s~EGGVaaG~g~LDS~~ 568 (570)
|++|||||||+||+++|++||+|++...++||||||||+++++++++++|+++|||||||++++|||||||||||||||+
T Consensus 418 ~~ayILMerI~Pp~~~n~lvR~g~~~~~~~iSELGIfG~~l~~~~~i~~N~~~G~LlRTK~~~s~EGGVaaG~g~LDS~~ 497 (499)
T 3kal_A 418 DAAYILMQRIFPATSPAILVRDGNWDTGHVISEAGIFGTYLRNKDKIIINNESGYMVRTKISSSYEGGVLPGFGVVDTVY 497 (499)
T ss_dssp GGGCEEEECCCCCCEEEEEEETTEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTCSCCCTTTTTCEEECEE
T ss_pred HHHHHHHhhcCCCCCCeEEEECCccccCCeeeeccceEEEEeCCCeEEEcCcceEEEecCCCCCCCCCeeeeeeecccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 008309 569 LT 570 (570)
Q Consensus 569 L~ 570 (570)
|+
T Consensus 498 L~ 499 (499)
T 3kal_A 498 LT 499 (499)
T ss_dssp EC
T ss_pred eC
Confidence 96
No 2
>2hgs_A Protein (glutathione synthetase); amine/carboxylate ligase; HET: ADP GSH; 2.10A {Homo sapiens} SCOP: c.30.1.4 d.142.1.6
Probab=100.00 E-value=1.1e-165 Score=1324.58 Aligned_cols=457 Identities=42% Similarity=0.680 Sum_probs=435.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcceeeee-cCCcCCCCCCCcceeeeeeeecCCCCCHHHHHHHHHHhhHHHHHHHHhhCC
Q 008309 97 QSVDQDLVQKMVYDALVWSSLHGLVVGD-RSVQRSGKVPGVGLVHAPFALLPVSFPESHFREACELAPIFNELVDRVSLD 175 (570)
Q Consensus 97 ~~l~~~~~~~L~~~a~dwa~~hGl~~~~-~~~~~~~~~~~~~~~~aPftL~PspfPr~~F~~A~~lq~~~N~L~~rVS~D 175 (570)
|.++++++++|+++|+|||++|||+|+| +..+ .+..++|||||||||||||++|++|+++|++||+|||+||+|
T Consensus 8 ~~l~~~~~~~l~~~a~dwa~~hGl~~~p~~~~~-----~~~~~~~aP~tL~PspfPr~~f~~a~~~q~~~n~L~~~vs~D 82 (474)
T 2hgs_A 8 LLQDKQQLEELARQAVDRALAEGVLLRTSQEPT-----SSEVVSYAPFTLFPSLVPSALLEQAYAVQMDFNLLVDAVSQN 82 (474)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTTCEEECSSCTT-----CCSSEEECCEESSCCEECHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCeEEeccCCCC-----CCCceEecCEEecCCcCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4588999999999999999999999995 4332 224689999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCChhhHHHHHHHHHHHhccCCCceeeeeeecccc-ccccCC--ccceEEeeceecccccchhhhHHH
Q 008309 176 GKFLQESLSRTKKVDPFTSRLLDIHSKMLELNKKEDIRLGLHRSDYM-LDEQTK--SLLQIEVNTISSSFSGLSCLVSEL 252 (570)
Q Consensus 176 ~~fL~~~l~~~~k~D~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYM-ld~~~~--~lKQVE~NTISaSFggLs~~vs~L 252 (570)
++||+++|++++++|+||++||+||++|+++|++|+++||||||||| +|..++ +|||||||||||||||||++|++|
T Consensus 83 ~~fL~~~l~~~~~~D~Ft~~L~~I~~~v~~~g~~q~~~Lgl~RSDYM~l~~~~~~~~lKQVE~NTIs~SFggls~~v~~l 162 (474)
T 2hgs_A 83 AAFLEQTLSSTIKQDDFTARLFDIHKQVLKEGIAQTVFLGLNRSDYMFQRSADGSPALKQIEINTISASFGGLASRTPAV 162 (474)
T ss_dssp HHHHHHHHHTHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECSSSCEEEEEEEEECSSCCCHHHHHHSHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcCCCCceeeeeeecccccccccCCCCceEEEEeechhhhcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 998766 799999999999999999999999
Q ss_pred HHHHHHhhccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCCcEEEEEEeCCCCccchhhHHHHHHHhhCCceEEEech
Q 008309 253 HRSLLIHYGERLGLDSKKVPGNSAVIQFAEAMAKAWTEYNNARALVLVVVQSEEHNMYDQHWLSSVLKERHNVTTIRKTL 332 (570)
Q Consensus 253 Hr~l~~~~~~~~~~~~~~lp~N~al~~la~gLa~A~~~Y~~~~avVLfVVq~~ErNi~DQr~lE~~L~~~~gI~viR~Tl 332 (570)
||||++.|+.... ..++|+|++++++|+|||+||++|++++++||||||++|||+||||+|||+|+++ ||+++|+||
T Consensus 163 H~~l~~~~~~~~~--~~~~p~N~a~~~la~gla~A~~~Y~~~~~~vl~VVq~~E~N~~DQr~le~~L~~~-~I~~~R~t~ 239 (474)
T 2hgs_A 163 HRHVLSVLSKTKE--AGKILSNNPSKGLALGIAKAWELYGSPNALVLLIAQEKERNIFDQRAIENELLAR-NIHVIRRTF 239 (474)
T ss_dssp HHHHHHHTTCHHH--HTTSCCCCHHHHHHHHHHHHHHHHCCTTCEEEEECCSSCTTHHHHHHHHHHHHTT-TCCEEEECH
T ss_pred HHHHHHhhccccc--cccCCCCchHHHHHHHHHHHHHHhCCCCcEEEEEecCCCcchHhHHHHHHHHHhC-CCcEEEeEH
Confidence 9999988765422 2458999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhHhhcceecCCCceEEcCeEEEEEEeecCCCCCCCCChhhHHHHHhhhhcccccCCchhhhhccchHHHHHhcCCcchh
Q 008309 333 AEIDAEGELLPDGTLLVGGQVIAVVYFRAGYAPTDYPSESEWRARLLMEQSSAVKCPSISYHLAGTKKIQQELAKPNVLE 412 (570)
Q Consensus 333 ~el~~~~~l~~~~~L~vdg~EVaVVYfRaGY~P~dYpse~eW~aRl~LE~S~AIKCPsI~~qLaGtKKVQQ~La~pgvLe 412 (570)
+||.++++++++|+|+++|.||||||||+||+|+|| +|.+|++|++||+|+|||||||+|||||||||||+|++|++||
T Consensus 240 ~el~~~~~l~~~~~L~~~~~eVaVVYfRaGY~P~dY-se~~W~aRl~lE~S~AIKcPsi~~qLaGtKKvQQ~La~p~vLe 318 (474)
T 2hgs_A 240 EDISEKGSLDQDRRLFVDGQEIAVVYFRDGYMPRQY-SLQNWEARLLLERSHAAKCPDIATQLAGTKKVQQELSRPGMLE 318 (474)
T ss_dssp HHHHHHEEECSSCCEEETTEEEEEEEESSCSSGGGC-CHHHHHHHHHHHHSSSEEESCHHHHHTTSHHHHHHTTSTTHHH
T ss_pred HHHhhhcccCCCCcEEEcCEEEEEEEecCCCChhhc-chHHHHHHHHHHhcCceeCCCHHHHHhhhHHHHHHhcChhHHh
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhhhhcccc-CCHHHHHHHHHhccccccCCcH----HHHHHhhcCCCCceecCCCcCCCccccchhHHHHHHhhccCCCc
Q 008309 413 SFLLVSRFL-DNKEDIAKVRKCFAGLWSLDDS----EIVSKAIENPELYVMKPQREGGGNNIYGEDVKETLLRLKKDGTD 487 (570)
Q Consensus 413 ~~~~~~rFl-~~~~~~~~lr~tFa~lysLd~~----~~v~~A~~~P~~yVLKPQREGGGNNiYg~dI~~~L~~l~~~~~~ 487 (570)
||+ .|++++++||+||++||+||++ +++++|+++|++||||||||||||||||+||+++|++|+++ +
T Consensus 319 ------rfl~~~~~~~~~lr~tFa~ly~Ld~~~~g~~~~~~A~~~p~~~VLKPQREGGGNNiYg~dI~~~L~~l~~~--e 390 (474)
T 2hgs_A 319 ------MLLPGQPEAVARLRATFAGLYSLDVGEEGDQAIAEALAAPSRFVLKPQREGGGNNLYGEEMVQALKQLKDS--E 390 (474)
T ss_dssp ------HHSTTCHHHHHHHHHTCCCEEECSSSHHHHHHHHHHHHSGGGEEEEESCCSSSCCBCHHHHHHHHHHHTTS--G
T ss_pred ------hhcCCCHHHHHHHHHhhhcccCCCcchhhhHHHHHHHhCchheeecCcccCCccccchHHHHHHHHhcCCc--c
Confidence 999 5899999999999999999974 68999999999999999999999999999999999999875 2
Q ss_pred cccceeeccccCCCCcceEEEecCc-cccccceeccceeEEEEecCcEEEeeccceEEEeecCCCCCCCceeeccccccc
Q 008309 488 EDAAYILMQRIFPSVSLTFLMRDGI-CHKDHAISELGIYGAYLRIKEKVIMNEQSGYLMRTKVASSNEGGVAAGFAVLDS 566 (570)
Q Consensus 488 e~~aYILMerI~Pp~~~n~lvR~g~-~~~~~~VSELGIfG~~l~~~~~ii~N~~~GyLlRTK~~~s~EGGVaaG~g~LDS 566 (570)
+|++|||||||+||+++|++||+|+ +..+++||||||||++++++++++.|+++|||||||++++||||||||||||||
T Consensus 391 ~~~ayILMerI~Pp~~~~~~vR~g~~~~~~~~iSELGIfg~~l~~~~~v~~N~~~G~LlRTK~~~s~EGGVaaG~g~lDS 470 (474)
T 2hgs_A 391 ERASYILMEKIEPEPFENCLLRPGSPARVVQCISELGIFGVYVRQEKTLVMNKHVGHLLRTKAIEHADGGVAAGVAVLDN 470 (474)
T ss_dssp GGGGEEEEECCCCCCEEEEEECTTSCCEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTCSSCCTTTTSCEEEC
T ss_pred cceeeeeeecccCCCCCeEEEECCccccccceeeccceeEEEEECCCEEEEecceeEEEEecCCCCCCCCeeeeeecccc
Confidence 3999999999999999999999999 788999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 008309 567 LYLT 570 (570)
Q Consensus 567 ~~L~ 570 (570)
|+|+
T Consensus 471 ~~L~ 474 (474)
T 2hgs_A 471 PYPV 474 (474)
T ss_dssp CEEC
T ss_pred eeeC
Confidence 9996
No 3
>1m0w_A Glutathione synthetase; amine/carboxylate ligase, structural genomics, PSI, protein structure initiative; HET: ANP 3GC; 1.80A {Saccharomyces cerevisiae} SCOP: c.30.1.4 d.142.1.6 PDB: 1m0t_A*
Probab=100.00 E-value=2.3e-165 Score=1326.65 Aligned_cols=459 Identities=36% Similarity=0.579 Sum_probs=434.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcceeeeecCCcCCCCCCCcceeeeeeeecCCCCCHHHHHHHHHHhhHHHHHHHHhhCC
Q 008309 96 LQSVDQDLVQKMVYDALVWSSLHGLVVGDRSVQRSGKVPGVGLVHAPFALLPVSFPESHFREACELAPIFNELVDRVSLD 175 (570)
Q Consensus 96 ~~~l~~~~~~~L~~~a~dwa~~hGl~~~~~~~~~~~~~~~~~~~~aPftL~PspfPr~~F~~A~~lq~~~N~L~~rVS~D 175 (570)
||+ +++++++|+++|+|||++|||+|++ ..+.+ ++..++|||||||||||||++|++|+++|++||+|||+||+|
T Consensus 4 ~pp-~~~~~~~l~~~a~dwa~~hGl~~~~-~~~~~---~~~~~~~aP~tL~PspfPr~~f~~a~~~q~~~n~L~~~vs~D 78 (491)
T 1m0w_A 4 YPP-SKDQLNELIQEVNQWAITNGLSMYP-PKFEE---NPSNASVSPVTIYPTPIPRKCFDEAVQIQPVFNELYARITQD 78 (491)
T ss_dssp --C-CHHHHHHHHHHHHHHHHHHTCEECC-TTGGG---CTTEEEECCEESSCEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHHHHHCCcEEec-CCCCC---CCCceEecCEEecCCcCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 677 8899999999999999999999998 44321 224689999999999999999999999999999999999999
Q ss_pred ----HHHHHHHHhcccCCC-hhhHHHHHHHHHHHh--ccCCCceeeeeeeccccccccCC--ccceEEeeceecccccch
Q 008309 176 ----GKFLQESLSRTKKVD-PFTSRLLDIHSKMLE--LNKKEDIRLGLHRSDYMLDEQTK--SLLQIEVNTISSSFSGLS 246 (570)
Q Consensus 176 ----~~fL~~~l~~~~k~D-~Ft~~L~~I~~~v~~--~g~~q~i~LGL~RSDYMld~~~~--~lKQVE~NTISaSFggLs 246 (570)
.+||.++|++++++| +||++||+||++|++ +|++|+++|||||||||+|...+ +|||||||||||||||||
T Consensus 79 ~~~~~~fL~~~l~~~~~~D~~Ft~~L~~I~~~v~~~~~g~~q~~~Lgl~RSDYMl~~~~~~~~~KQVE~NTIs~Sfggls 158 (491)
T 1m0w_A 79 MAQPDSYLHKTTEALALSDSEFTGKLWSLYLATLKSAQYKKQNFRLGIFRSDYLIDKKKGTEQIKQVEFNTVSVSFAGLS 158 (491)
T ss_dssp HTCTTSHHHHHHHHHHHHTTTTHHHHHHHHHHHTSCCSSCCCCCEEEEEEEEEEEEEETTEEEEEEEEEECSSCCCHHHH
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccccCceeeeeeehhhccCCCCCCCceeEEEeechhhhcchHH
Confidence 999999999999999 999999999999999 99999999999999999998765 799999999999999999
Q ss_pred hhhHHHHHHHHHhhc-----cccCCCCCCCCCCchHHHHHHHHHHHHHHhCCC-------CcEEEEEEeCCCCccchhhH
Q 008309 247 CLVSELHRSLLIHYG-----ERLGLDSKKVPGNSAVIQFAEAMAKAWTEYNNA-------RALVLVVVQSEEHNMYDQHW 314 (570)
Q Consensus 247 ~~vs~LHr~l~~~~~-----~~~~~~~~~lp~N~al~~la~gLa~A~~~Y~~~-------~avVLfVVq~~ErNi~DQr~ 314 (570)
++|++|||||++++. ..+.. ..+|+|++++++|+|||+||++|+++ +++||||||++|||+||||+
T Consensus 159 ~~v~~lH~~l~~~~~~~~~~~~~~~--~~~p~N~a~~~la~gla~A~~~y~~~~~~~~~~~~~vl~VVq~~E~N~~DQr~ 236 (491)
T 1m0w_A 159 EKVDRLHSYLNRANKYDPKGPIYND--QNMVISDSGYLLSKALAKAVESYKSQQSSSTTSDPIVAFIVQRNERNVFDQKV 236 (491)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCSSCG--GGBCCCCHHHHHHHHHHHHHHHHHHTCC-----CCEEEEEECTTCSCHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccccc--ccCCCCchHHHHHHHHHHHHHHhcCccccccCCCcEEEEEecCCCcchhhHHH
Confidence 999999999998641 12222 36899999999999999999999876 78999999999999999999
Q ss_pred HHHHHHhhCCceEEEechhhHhhcceec-CCCceEEcC--eEEEEEEeecCCCCCCCCChhhHHHHHhhhhcccccCCch
Q 008309 315 LSSVLKERHNVTTIRKTLAEIDAEGELL-PDGTLLVGG--QVIAVVYFRAGYAPTDYPSESEWRARLLMEQSSAVKCPSI 391 (570)
Q Consensus 315 lE~~L~~~~gI~viR~Tl~el~~~~~l~-~~~~L~vdg--~EVaVVYfRaGY~P~dYpse~eW~aRl~LE~S~AIKCPsI 391 (570)
|||+|+++|||+++|+||+||.++++++ ++++|+++| .||||||||+||+|+|||+|++|++|++||+|+|||||||
T Consensus 237 lE~~L~~~~~I~~~R~t~~el~~~~~l~~~~~~L~~~~~~~eVaVVYfRaGY~P~dY~se~~W~aRl~lE~S~AIKcPsi 316 (491)
T 1m0w_A 237 LELNLLEKFGTKSVRLTFDDVNDKLFIDDKTGKLFIRDTEQEIAVVYYRTGYTTTDYTSEKDWEARLFLEKSFAIKAPDL 316 (491)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHHEEECTTTCCEEETTTCCEEEEEEEESCSSGGGCCSHHHHHHHHHHHHSSSEEETCH
T ss_pred HHHHHHHhcCCcEEEEEHHHHhhhCccCCCCCeEEEcCCceEEEEEEecCCCChhhCCchhHHHHHHHHHhcCceeCCCH
Confidence 9999999999999999999999999998 789999999 8999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHhcCCcchhhhhhhccccCCHHHHHHHHHhccccccCCcH----HHHHHhhcCCCCceecCCCcCCCc
Q 008309 392 SYHLAGTKKIQQELAKPNVLESFLLVSRFLDNKEDIAKVRKCFAGLWSLDDS----EIVSKAIENPELYVMKPQREGGGN 467 (570)
Q Consensus 392 ~~qLaGtKKVQQ~La~pgvLe~~~~~~rFl~~~~~~~~lr~tFa~lysLd~~----~~v~~A~~~P~~yVLKPQREGGGN 467 (570)
+|||||||||||+|++|++|| ||++|++++++||+||++||+||++ +++++|+++|++||||||||||||
T Consensus 317 ~~qLaGtKKvQQ~La~p~vLe------rfl~~~~~~~~lr~tFa~ly~Ld~~~~g~~~~~~A~~~p~~~VLKPQREGGGN 390 (491)
T 1m0w_A 317 LTQLSGSKKIQQLLTDEGVLG------KYISDAEKKSSLLKTFVKIYPLDDTKLGREGKRLALSEPSKYVLKPQREGGGN 390 (491)
T ss_dssp HHHHHTCHHHHHHTTSHHHHT------TTCCCHHHHHHHHTTCCCEEECSSSHHHHHHHHHHHHCGGGEEEEESSCSSCC
T ss_pred HHHHhhhHHHHHHhCChhHHH------hhcCCHHHHHHHHHhhhcccCCCcchhhhHHHHHHHhChhheeecCcccCCcc
Confidence 999999999999999999999 9998999999999999999999975 589999999999999999999999
Q ss_pred cccchhHHHHHHhhccCCCccccceeeccccCCCCc-ceEEEecCccccccceeccceeEEEEecCcEEEeeccceEEEe
Q 008309 468 NIYGEDVKETLLRLKKDGTDEDAAYILMQRIFPSVS-LTFLMRDGICHKDHAISELGIYGAYLRIKEKVIMNEQSGYLMR 546 (570)
Q Consensus 468 NiYg~dI~~~L~~l~~~~~~e~~aYILMerI~Pp~~-~n~lvR~g~~~~~~~VSELGIfG~~l~~~~~ii~N~~~GyLlR 546 (570)
||||+||+++|++|+++ ||++|||||||+||++ +|++||+|++..+++||||||||++++++++++.|+++|||||
T Consensus 391 NiYg~dI~~~L~~l~~~---e~~ayILMerI~Pp~~~~~~~vR~g~~~~~~~iSELGIfG~~l~~~~~v~~N~~~G~LlR 467 (491)
T 1m0w_A 391 NVYKENIPNFLKGIEER---HWDAYILMELIEPELNENNIILRDNKSYNEPIISELGIYGCVLFNDEQVLSNEFSGSLLR 467 (491)
T ss_dssp CEEGGGHHHHHHTSCGG---GGGGEEEEECCCCCCBCSCCEEETTEEECCCBEEEEEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred cccHHHHHHHHHhcCHh---hcceeeeeecccCCCCCCeEEEECCccccCCeeecccceEEEEECCCEEEEecceeEEEE
Confidence 99999999999999876 9999999999999999 9999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCceeeccccccccccC
Q 008309 547 TKVASSNEGGVAAGFAVLDSLYLT 570 (570)
Q Consensus 547 TK~~~s~EGGVaaG~g~LDS~~L~ 570 (570)
||++++|||||||||||||||+|+
T Consensus 468 TK~~~s~EGGVaaG~g~lDS~~L~ 491 (491)
T 1m0w_A 468 SKFNTSNEGGVAAGFGCLDSIILY 491 (491)
T ss_dssp EECCEEETTEEEECCEEECCEEEC
T ss_pred ecCCCCCCCCeeeeeecccceeeC
Confidence 999999999999999999999996
No 4
>2wyo_A Glutathione synthetase; ligase, ATP-grAsp; HET: GSH; 3.15A {Trypanosoma brucei}
Probab=100.00 E-value=2.9e-160 Score=1296.34 Aligned_cols=457 Identities=33% Similarity=0.509 Sum_probs=409.9
Q ss_pred CHHHHHHHHHHHHHHHHHcceeeeecCCcCCCCCCCcceeeeeeeecCCCCCHHHHHHHHHHhhHHHHHHHHhhCCHHHH
Q 008309 100 DQDLVQKMVYDALVWSSLHGLVVGDRSVQRSGKVPGVGLVHAPFALLPVSFPESHFREACELAPIFNELVDRVSLDGKFL 179 (570)
Q Consensus 100 ~~~~~~~L~~~a~dwa~~hGl~~~~~~~~~~~~~~~~~~~~aPftL~PspfPr~~F~~A~~lq~~~N~L~~rVS~D~~fL 179 (570)
.+.++++|+++|+|||++|||+|++++. ..++|||||||||||||++|++|+++|++||+|||+||+|++||
T Consensus 14 ~~~~~~~l~~~a~dwa~~hGl~~~~~~~--------~~~~~aP~tL~PspfPr~~F~~a~~~q~~~NeL~~~vS~D~~fL 85 (562)
T 2wyo_A 14 LELGAERYAEQFAAKCHELGMVMKESAG--------PGRVPVPVTLQPSMISRGEFGTLCCMQPLWNEAVDNTARNFTFL 85 (562)
T ss_dssp HHTTCCSHHHHHHHHHHHHTCEEECSSS--------SCEEECCEESSCEEEEHHHHHHHHHTHHHHHHHHHHHHTCHHHH
T ss_pred chhHHHHHHHHHHHHHHhcCcEEeecCC--------CceeecceEecCCcCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3455688999999999999999997653 25799999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCC-hhhHHHHHHHHHHHhcc-CCCceeeeeeecccccccc-----C---CccceEEeeceecccccchhhh
Q 008309 180 QESLSRTKKVD-PFTSRLLDIHSKMLELN-KKEDIRLGLHRSDYMLDEQ-----T---KSLLQIEVNTISSSFSGLSCLV 249 (570)
Q Consensus 180 ~~~l~~~~k~D-~Ft~~L~~I~~~v~~~g-~~q~i~LGL~RSDYMld~~-----~---~~lKQVE~NTISaSFggLs~~v 249 (570)
+++|++++++| +||++||+||++|+++| +.|+++|||||||||+|.+ + .+|||||||||||||||||++|
T Consensus 86 ~~~l~~~~~~D~~Ft~~L~~I~~~v~~~g~~~q~l~Lgl~RSDYM~~~~~~~~~~~~~~~~KQVE~NTIS~SFggls~~v 165 (562)
T 2wyo_A 86 RDALQETAASDVNFTGKLLNMLQEVYLSGGPFQQLMLGIFRTDYMREGVYDKMLSTTASRWKNVEINTISCSFAGLSPLI 165 (562)
T ss_dssp HHHTHHHHHHCTTTHHHHHHHHHHHHSSSSCCCCCEEEEEEEEEEEBSCCCC--CCSSCSEEEEEEECSSCCCTTTHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhcCCccCceeeeeeehhhhcCccccccccccccceeEEEeechhhhcchhHHHH
Confidence 99999999999 99999999999999999 9999999999999999973 2 3799999999999999999999
Q ss_pred HHHHHHHHH---hh----ccccCCC-----------CCCCCCCchHHHHHHHHHHHHHH-------------hCC-----
Q 008309 250 SELHRSLLI---HY----GERLGLD-----------SKKVPGNSAVIQFAEAMAKAWTE-------------YNN----- 293 (570)
Q Consensus 250 s~LHr~l~~---~~----~~~~~~~-----------~~~lp~N~al~~la~gLa~A~~~-------------Y~~----- 293 (570)
++|||||++ .+ ++..... ...+|+|++++++|+|||+||++ |++
T Consensus 166 ~~lH~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~N~a~~~la~gla~A~~~~~~~~~~~~~~~~Y~~~~~~~ 245 (562)
T 2wyo_A 166 TEFHQHIAAYLQVLQKARGKEDDDGVENMSWIWGKGNCRLERSVSGDVVPKAIADAVRAWVEQQKFASLRASWEQFQQNE 245 (562)
T ss_dssp HHHHHHHHHHHHHHHHTTC-----CCCCCCGGGCCSSSEECCCTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTC-----
T ss_pred HHHHHHHHhhhhhhhhcccccccccccccccccccccccCCCCchHHHHHHHHHHHHHhhhccccccchhhccccccccc
Confidence 999999985 23 1111111 13579999999999999999999 987
Q ss_pred -------------CCcEEEEEEeCCCCccchhhHHHHHHHhhCCceEEEechhhHhhcceec---CC-Cc-eEEcC-eEE
Q 008309 294 -------------ARALVLVVVQSEEHNMYDQHWLSSVLKERHNVTTIRKTLAEIDAEGELL---PD-GT-LLVGG-QVI 354 (570)
Q Consensus 294 -------------~~avVLfVVq~~ErNi~DQr~lE~~L~~~~gI~viR~Tl~el~~~~~l~---~~-~~-L~vdg-~EV 354 (570)
+++|||||||++|||+||||+|||+|+++|||+++|+||+||.+.++++ ++ ++ |+++| .||
T Consensus 246 ~~~~~~~~~~~~~~~~vVL~VVQ~~ErN~~DQr~le~~L~~~hgI~~iR~Tl~el~~~~~l~~~~~~~~~~L~~~g~~eV 325 (562)
T 2wyo_A 246 VGSGEIHQLGVLDTAPVVLVVVQENERNTADQYALLMRVLEEHRIRFIFRTLQELHLSLKLHSISPEQPPLAVVDGHYPI 325 (562)
T ss_dssp ----------CCCSSCEEEEEECSSCSCHHHHHHHHHHHHHTTCCCEEEECHHHHHHHEEEECSSTTSCCEEEETTTEEE
T ss_pred cccccccccccCCCCcEEEEEecCCCcchHhHHHHHHHHHHhcCCcEEEeEHHHHhhhcccCccCCCCCceEEecCceEE
Confidence 7899999999999999999999999999999999999999999999998 77 89 99999 999
Q ss_pred EEEEeecCCCCCCCCChhhHHHHHhhhhcccccCCchhhhhccchHHHHHhcCCc-chhhhhhhccc--cCCHHHHHHHH
Q 008309 355 AVVYFRAGYAPTDYPSESEWRARLLMEQSSAVKCPSISYHLAGTKKIQQELAKPN-VLESFLLVSRF--LDNKEDIAKVR 431 (570)
Q Consensus 355 aVVYfRaGY~P~dYpse~eW~aRl~LE~S~AIKCPsI~~qLaGtKKVQQ~La~pg-vLe~~~~~~rF--l~~~~~~~~lr 431 (570)
||||||+||+|+|||+|.+|++|++||+|+|||||||+|||||||||||+|++|+ +|| || ++|++++++||
T Consensus 326 aVVYfRaGY~P~dYpse~~W~aRl~lE~S~AIKCPsI~~qLaGtKKVQQ~La~p~~vLe------rf~~l~~~~~~~~lr 399 (562)
T 2wyo_A 326 AVAYFRSTYVPEDFPTDATWAARLSLERSSAIKCPSIPYHLLTFKKLQQLLCDVDRVLV------PVAFCGDSDKAGLLQ 399 (562)
T ss_dssp EEEEEESCSSGGGCCSHHHHHHHHHHHHSSCEEETCHHHHHTTSHHHHHHTTCCCCCCC------CCCSTTCHHHHHHHH
T ss_pred EEEEecCCCChhhCCchhhHHHHHHHHhcCcccCCCHHHHHhhhHHHHHHhcCchhhhh------hhhcCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 999 99 98999999999
Q ss_pred HhccccccCCcH----HH----HHHhhcCCCCceecCCCcCCCccccchhHHHHHHhhccCCC----ccccceeeccccC
Q 008309 432 KCFAGLWSLDDS----EI----VSKAIENPELYVMKPQREGGGNNIYGEDVKETLLRLKKDGT----DEDAAYILMQRIF 499 (570)
Q Consensus 432 ~tFa~lysLd~~----~~----v~~A~~~P~~yVLKPQREGGGNNiYg~dI~~~L~~l~~~~~----~e~~aYILMerI~ 499 (570)
+||++||+||++ ++ +++|+++|++||||||||||||||||+||+++|++|+++++ +||++|||||||+
T Consensus 400 ~tFa~ly~Ld~~~~g~~~~~~~~~~A~~~p~~~VLKPQREGGGNNiyG~dI~~~L~~l~~~~~~~~~~e~~ayILMerI~ 479 (562)
T 2wyo_A 400 RHFVPQYSLNPKEVGEEAVEKVIHDVLQRPDQFVLKPQLEGGGNLLSGETMVKALKATKEGDPVTYSKVRCEYVVMSRIQ 479 (562)
T ss_dssp TTCCCEEECSCSSCTTTTHHHHHHSTTSCCCCCSSSCCSCCCSSHHHHHHCC------------CTTTTTSSCEEECCCC
T ss_pred HhhhcccCCCcchhhhhhhHHHHHHHhhChhheeecCCccCCccccchHHHHHHHHhcCCccccccccccceeEEEeccc
Confidence 999999999875 46 89999999999999999999999999999999999987532 5999999999999
Q ss_pred CCCcceEEEecCc--cccccceeccceeEEEEecC---------cEEEeeccceEEEeecCCCCCCCceeeccccccccc
Q 008309 500 PSVSLTFLMRDGI--CHKDHAISELGIYGAYLRIK---------EKVIMNEQSGYLMRTKVASSNEGGVAAGFAVLDSLY 568 (570)
Q Consensus 500 Pp~~~n~lvR~g~--~~~~~~VSELGIfG~~l~~~---------~~ii~N~~~GyLlRTK~~~s~EGGVaaG~g~LDS~~ 568 (570)
||+++|++||+|+ +...++||||||||++|+++ +++++|+++|||||||++++|||||||||||||||+
T Consensus 480 Pp~~~~~~vR~g~~~~~~~~~iSELGIfG~~l~~~~~~~~~~~~~~v~~N~~~GyLlRTK~~~s~EGGVaaG~g~LDS~~ 559 (562)
T 2wyo_A 480 FHVSTGSLLARGDVVQLERNMCSEVGIFGVILSAAKGSSVGTNGSSVLFNTFAGYTVRSKPADADDGGVMAGVAALDSLA 559 (562)
T ss_dssp BCCEEEEEEETTEEEEEEEEEEEEEEEEEEEEECCTTCCSSGGGCSEEEEEEEEEEEEEEETTC--------CCCEECEE
T ss_pred CCCCCeEEEECCccccccCCeeeecceeEEEEECCCcccccCCCCceEeccceeEEEEecCCCCCCCCeeeeeeccccee
Confidence 9999999999999 67899999999999999999 899999999999999999999999999999999999
Q ss_pred cC
Q 008309 569 LT 570 (570)
Q Consensus 569 L~ 570 (570)
|+
T Consensus 560 L~ 561 (562)
T 2wyo_A 560 VV 561 (562)
T ss_dssp EE
T ss_pred ec
Confidence 85
No 5
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=98.74 E-value=3.2e-08 Score=107.10 Aligned_cols=357 Identities=11% Similarity=0.163 Sum_probs=211.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcceeeeecCCcCCCCCCCcceeeeeeeecCCCCCHHHHHHH----HHHhhHHHHHHHHhh
Q 008309 98 SVDQDLVQKMVYDALVWSSLHGLVVGDRSVQRSGKVPGVGLVHAPFALLPVSFPESHFREA----CELAPIFNELVDRVS 173 (570)
Q Consensus 98 ~l~~~~~~~L~~~a~dwa~~hGl~~~~~~~~~~~~~~~~~~~~aPftL~PspfPr~~F~~A----~~lq~~~N~L~~rVS 173 (570)
.++++++....+.+...-..+|+.+.--.... + .-...||.+.|--++...|++. .+-..++|.+++.|=
T Consensus 33 ~~~~~~l~~r~~~~~~~~~~~Gitf~vy~~~~-~-----~~r~~p~d~iP~ii~~~eW~~le~Gl~QR~~~Ln~~l~DiY 106 (474)
T 3n6x_A 33 DVPHQQLESKRQEAELLFRRVGITFNVYGEDA-G-----AERLIPFDVVPRILSASEWARLSDGAIQRVKALNMFLHDVY 106 (474)
T ss_dssp HSSTTTTSSHHHHHHHHHHHHCCCC-----------------CCCBCSSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEeccCCC-C-----CCcccccCCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666777788888899999876432211 0 1257999999999999999986 345678899999888
Q ss_pred CCHHHHHHHHhc-ccCCC-hhhHHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeeceecccccchhhhHH
Q 008309 174 LDGKFLQESLSR-TKKVD-PFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTISSSFSGLSCLVSE 251 (570)
Q Consensus 174 ~D~~fL~~~l~~-~~k~D-~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTISaSFggLs~~vs~ 251 (570)
.+.+.|.+-+-+ ++..+ .|.. .+..-.....+.+.|.|.|...+. +|.|+-+|.||=+-|..+.+-.--.
T Consensus 107 g~q~il~~G~iP~lv~~~p~y~~-------~~~g~~p~~~~~~~i~~~Dl~r~~-dG~~~vlEdn~~~PSG~~y~lenR~ 178 (474)
T 3n6x_A 107 HDQEIIKAGIVPSSILANAQYRP-------EMFGVDVPGGVYAHIAGVDLVRTG-ENDFYVLEDNLRTPSGVSYMLENRK 178 (474)
T ss_dssp TTCHHHHTTSSCGGGGGCTTCCG-------GGTTCCCGGGCSCSEEEEEEEECS-SSCEEEEEEECSSCCCHHHHHHHHH
T ss_pred CChhHHhcCCCHHHHccCccccH-------HHCCCCCCCCeEEEEEEEEEEECC-CCCEEEEEeCCCCCchHHHHHHHHH
Confidence 888777662221 11111 2221 112222345677999999988875 5789999999998885444321111
Q ss_pred HHHHHHHh-hccccCCCCCCCCCC-chHHHHHHHHHHHHHHhCCCCcEEEEEEeCCCCccchhhHHHHHHHhh-CCceEE
Q 008309 252 LHRSLLIH-YGERLGLDSKKVPGN-SAVIQFAEAMAKAWTEYNNARALVLVVVQSEEHNMYDQHWLSSVLKER-HNVTTI 328 (570)
Q Consensus 252 LHr~l~~~-~~~~~~~~~~~lp~N-~al~~la~gLa~A~~~Y~~~~avVLfVVq~~ErNi~DQr~lE~~L~~~-~gI~vi 328 (570)
+...+... +... ++..+ .-...|.++|.+++.. +..+|.|+++ .|+..|-+ +.|.....+ .|+..+
T Consensus 179 ~~~r~~pelf~~~------~v~~~~~~~~~l~~~L~~~a~~-~~~~P~VvvL-tpG~~ne~---yfEhafLA~~lG~~Lv 247 (474)
T 3n6x_A 179 MMMRLFPELFRRY------PVAPVEHYPQVLLNNLRAVAQA-GVHEPTVVLL-TPGAYNSA---YFEHAFIAQQMGIELV 247 (474)
T ss_dssp HHHHHCHHHHHHS------CBCCCTTHHHHHHHHHHHTSCT-TCSSCCEEEE-CCCSSSTT---HHHHHHHHHHHTCEEE
T ss_pred HHHHHhHHHHHhc------CCCCchhHHHHHHHHHHHhccc-CCCCCEEEEE-CCCCchhH---HHHHHHHHhcCCcEEe
Confidence 22222211 2111 12222 2235666666655331 2345665444 48888854 555554433 376644
Q ss_pred EechhhHhhcceecCCCceEEc----CeEEEEEEeecCCCCCCCCChhhH---------HHHHhhhhcccccCCchhhhh
Q 008309 329 RKTLAEIDAEGELLPDGTLLVG----GQVIAVVYFRAGYAPTDYPSESEW---------RARLLMEQSSAVKCPSISYHL 395 (570)
Q Consensus 329 R~Tl~el~~~~~l~~~~~L~vd----g~EVaVVYfRaGY~P~dYpse~eW---------~aRl~LE~S~AIKCPsI~~qL 395 (570)
.-.|| .+ .|++|++. .++|.|||=|- .++|-+..+- -.......-+..-...+..++
T Consensus 248 --eg~DL----~v-~dg~v~~rt~~G~~~VDVIyRRv---dd~~lDpl~~~~dS~lGv~gLl~A~r~G~V~i~Na~gsgv 317 (474)
T 3n6x_A 248 --EGQDL----FV-RNNAVYMRTTEGPKRVDVIYRRI---DDDFIDPLSFRPDSMLGVPGLLSVYRNGGVTLANAVGTGV 317 (474)
T ss_dssp --CGGGE----EE-CSSCEEECCTTCCEEECEEEECS---CGGGSCTTTSCTTCSSSCTTHHHHHHTTSCEEESCTTTHH
T ss_pred --chhhe----EE-ECCEEEEecCCCCeEEEEEEEcC---CHHhcCccccCCCcccccHHHHHHHHcCCEEEeCCCchhh
Confidence 22222 23 46888873 47999999998 4566543220 122233334444456777889
Q ss_pred ccchHHHHHhcCCcchhhhhhhccccCCHHHHHHHHHhccccccCCcHHHHHHhhcCCCCceecCCCcCCCcc-ccc---
Q 008309 396 AGTKKIQQELAKPNVLESFLLVSRFLDNKEDIAKVRKCFAGLWSLDDSEIVSKAIENPELYVMKPQREGGGNN-IYG--- 471 (570)
Q Consensus 396 aGtKKVQQ~La~pgvLe~~~~~~rFl~~~~~~~~lr~tFa~lysLd~~~~v~~A~~~P~~yVLKPQREGGGNN-iYg--- 471 (570)
+-.|-++-.|.+ ..+ .|+. ++ .|.. .++-|-..+.+..+.+++|-+++|+||--+.||.- +.|
T Consensus 318 ~~dKal~a~Lp~--l~~------~~lg-Ee---~il~-~VpT~~c~~~~~~~~vl~~l~~lViKp~~g~gg~gv~iG~~~ 384 (474)
T 3n6x_A 318 ADDKDTYIYVPE--MIR------FYLG-EE---PILS-NVPTYQLSKADDLKYVLDNLAELVVKEVQGSGGYGMLVGPAA 384 (474)
T ss_dssp HHSTTTGGGHHH--HHH------HHHC-SC---CSSE-ECCCEETTSHHHHHHHHHSGGGEEEEECCCE-----EEGGGC
T ss_pred hcCcHHHHHhHH--HHH------HhCC-Hh---hhcc-CCCceecCCHHHHHHHHhchhheEEEecCCCCCCceEECCcC
Confidence 999988888753 233 3333 22 1222 24455555667778889999999999988766543 343
Q ss_pred --hhHHHHHHhhccCCCccccceeeccccCCCCcceE
Q 008309 472 --EDVKETLLRLKKDGTDEDAAYILMQRIFPSVSLTF 506 (570)
Q Consensus 472 --~dI~~~L~~l~~~~~~e~~aYILMerI~Pp~~~n~ 506 (570)
+++.++++++.. +-..||.-+.|.+...+.+
T Consensus 385 s~~e~~~~~~~i~~----~p~~yIaQe~v~ls~~P~~ 417 (474)
T 3n6x_A 385 SKQELEDFRQRILA----NPANYIAQPTLALSTCPTL 417 (474)
T ss_dssp CHHHHHHHHHHHHH----SGGGEEEEECCCCCEEEEE
T ss_pred CHHHHHHHHHHHHh----CCCCEEEeeccCCccccee
Confidence 345555555654 4467999999999877776
No 6
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=97.81 E-value=6.3e-05 Score=84.37 Aligned_cols=181 Identities=15% Similarity=0.138 Sum_probs=102.5
Q ss_pred CCCHHHHHHH----HHHhhHHHHHHHHhhCCHHHHHHHHhcccCCChhhHHHHHHHHHHHhccCCCceeeeeeecccccc
Q 008309 149 SFPESHFREA----CELAPIFNELVDRVSLDGKFLQESLSRTKKVDPFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLD 224 (570)
Q Consensus 149 pfPr~~F~~A----~~lq~~~N~L~~rVS~D~~fL~~~l~~~~k~D~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld 224 (570)
.|+++.+++. .++-.++.+++++|-.|.+|+.. |. ..+ .+|+.-+..- +...+. -+-|-|+.+|
T Consensus 267 ~~t~~e~e~L~~at~eL~~m~l~a~~~vl~~~~l~~~-lg----IP~---~l~~lI~~sw--~~~~p~--lygRfDf~~d 334 (652)
T 2vob_A 267 ESNHEFHLRCVAYGTQLHAIFMEATAQVIESDEKLRL-FA----IPE---EFWPRIRHSW--KYQQTY--ISGRFDFAFN 334 (652)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH-TT----CCG---GGHHHHHHHH--HHEECC--CEEEEEEEEC
T ss_pred EeCHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH-cC----cCH---HHHHHHHhcc--ccCCCc--eEEEEEEEEc
Confidence 3556665554 45566667777777888776522 22 222 2333322221 112222 2559999999
Q ss_pred ccCCccceEEeeceecccccchhhhHHHHHHHHHh-hccccCCCCCCCCCCchHHHHHHH-HHHHHHHhCCCCcEEEEEE
Q 008309 225 EQTKSLLQIEVNTISSSFSGLSCLVSELHRSLLIH-YGERLGLDSKKVPGNSAVIQFAEA-MAKAWTEYNNARALVLVVV 302 (570)
Q Consensus 225 ~~~~~lKQVE~NTISaSFggLs~~vs~LHr~l~~~-~~~~~~~~~~~lp~N~al~~la~g-La~A~~~Y~~~~avVLfVV 302 (570)
..++.+|.+|+|.=+.++. +-+ +.+....++. ++ . ...++.-..+-+. |.++|+.+... +.|-|+.
T Consensus 335 g~~g~~KllE~NADTPt~l-~Ea--a~iq~~w~e~~~~----~----~~~~dq~n~l~e~~L~~~~~~~~~~-~~v~~~~ 402 (652)
T 2vob_A 335 NETGEVKCFEYNADSASTL-LEC--GLIQQKWAESVGL----D----KQDTRGSGFAVERNLKMAWANSGAT-GRVHFCV 402 (652)
T ss_dssp TTTCCEEEEEEETTCCTTH-HHH--HTHHHHHHHHTTC----C----CTTEEETTTTHHHHHHHHHHHSCCC-SEEEEEE
T ss_pred CCCCceEEEEEcCCCchHH-HHH--HHHHHHHHHHhcC----C----CCccchhhHHHHHHHHHHHHHhcCC-CEEEEEe
Confidence 7656799999999888874 222 2333344443 32 0 1123334455666 88999998765 5555553
Q ss_pred eCC-CCccchhhHHHHHHHhhCCceEEEec-hhhHhhcceecCCCceE-EcCeEEEEEEe
Q 008309 303 QSE-EHNMYDQHWLSSVLKERHNVTTIRKT-LAEIDAEGELLPDGTLL-VGGQVIAVVYF 359 (570)
Q Consensus 303 q~~-ErNi~DQr~lE~~L~~~~gI~viR~T-l~el~~~~~l~~~~~L~-vdg~EVaVVYf 359 (570)
.+. |.. +--++|...+ +..|+.+.-.. +.||. ++.+|+|+ .+|.+|.+||=
T Consensus 403 ~~~~ED~-~t~~yL~~~a-~eaG~~t~~~~~i~dL~----~~~~G~l~D~~g~~Id~lfK 456 (652)
T 2vob_A 403 DEEREEQ-YTALYCMQAA-EAVGLEGKLCILFDEFR----FDDNGHVVDSDGVRVRNVWK 456 (652)
T ss_dssp CSCHHHH-HHHHHHHHHH-HHTTCEEEEEETTTTCE----ECTTSCEECTTSCBCCEEEE
T ss_pred CCchHHH-HHHHHHHHHH-HHCCCcEEEecchhheE----ECCCCcEECCCCcEeeEEEe
Confidence 332 211 1113333323 45699999887 87663 34567766 46789999863
No 7
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=97.38 E-value=0.00034 Score=78.14 Aligned_cols=180 Identities=19% Similarity=0.227 Sum_probs=104.2
Q ss_pred CCCHHHHHHH----HHHhhHHHHHHHHhhCCHHHHHHHHhcccCCChhhHHHHHHHHHHHhccCCCceeeeeeecccccc
Q 008309 149 SFPESHFREA----CELAPIFNELVDRVSLDGKFLQESLSRTKKVDPFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLD 224 (570)
Q Consensus 149 pfPr~~F~~A----~~lq~~~N~L~~rVS~D~~fL~~~l~~~~k~D~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld 224 (570)
.|+++.+++. .++-.++.+++++|-.|.+|+. .+ ...+ .+|+.-++.-+. ..+- .-+-|-|+.+|
T Consensus 254 ~~s~~e~e~l~~at~eL~~m~~~a~~~v~~~~~l~~----~l-giP~---~~~~lI~~sw~~--~~~~-~l~gRfDf~~d 322 (619)
T 2io8_A 254 TITESAEQELIKATNELHLMYLHATDKVLKDDNLLA----LF-DIPK---ILWPRLRLSWQR--RRHH-MITGRMDFCMD 322 (619)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHG----GG-CCCG---GGHHHHHHHHHH--STTC-CCEEEEEEEEE
T ss_pred EeCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH----Hc-CCCH---HHHHHHHhcccc--CCCC-CeEEEEEEEEe
Confidence 3455555554 4556667777777777776652 22 2222 344333332111 2221 22559999999
Q ss_pred ccCCccceEEeeceecccccchhhhHHHHHHHHHhhccccCCCCCCCCCCchHHHHHHHHHHHHHHhCCCCcEEEEEEeC
Q 008309 225 EQTKSLLQIEVNTISSSFSGLSCLVSELHRSLLIHYGERLGLDSKKVPGNSAVIQFAEAMAKAWTEYNNARALVLVVVQS 304 (570)
Q Consensus 225 ~~~~~lKQVE~NTISaSFggLs~~vs~LHr~l~~~~~~~~~~~~~~lp~N~al~~la~gLa~A~~~Y~~~~avVLfVVq~ 304 (570)
.. + +|.+|+|.=+.++. +-+ +.+....++.++. ++.++....+.+.|.++|+....+ +.|-|+..+
T Consensus 323 g~-g-~KllE~NaDTPt~l-~Ea--a~iq~~wle~~~~--------~~~~dq~n~l~e~L~~~~~~~~~~-~~v~~a~~~ 388 (619)
T 2io8_A 323 ER-G-LKVYEYNADSASCH-TEA--GLILERWAEQGYK--------GNGFNPAEGLINELAGAWKHSRAR-PFVHIMQDK 388 (619)
T ss_dssp TT-E-EEEEEEECSSCCCH-HHH--HTHHHHHHHHHCC--------SSCBCTTTTHHHHHHHHHHTSCCC-SEEEEEECS
T ss_pred CC-e-eEEEEEeCCchHHH-HHH--HHHHHHHHHhcCC--------CCCchhhhHHHHHHHHHHHHhcCC-CEEEEEecC
Confidence 55 4 99999999888774 322 2333444444321 334445566788899999988765 555444333
Q ss_pred C-CCccchhhHHHHHHHhhCCceEEEec-hhhHhhcceecCCCceE-EcCeEEEEEEe
Q 008309 305 E-EHNMYDQHWLSSVLKERHNVTTIRKT-LAEIDAEGELLPDGTLL-VGGQVIAVVYF 359 (570)
Q Consensus 305 ~-ErNi~DQr~lE~~L~~~~gI~viR~T-l~el~~~~~l~~~~~L~-vdg~EVaVVYf 359 (570)
. |.. +--++|...+ ++.|+.+.-.. +.||. ++.+|+|+ .+|..|..||=
T Consensus 389 ~~Ed~-~t~~~L~~~a-~eaG~~~~~~~~i~dl~----~~~~G~l~d~dg~~I~~lfk 440 (619)
T 2io8_A 389 DIEEN-YHAQFMEQAL-HQAGFETRILRGLDELG----WDAAGQLIDGEGRLVNCVWK 440 (619)
T ss_dssp CHHHH-HHHHHHHHHH-HHTTCEEEEEESSTTCE----ECSSSCEECTTSCBCCEEEE
T ss_pred Cccch-HHHHHHHHHH-HHCCCceEEecchHhEE----ECCCCcEECCCCCEeeeEEe
Confidence 2 211 1223343333 45699998886 87664 34557665 47889988863
No 8
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=70.15 E-value=46 Score=31.75 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=28.3
Q ss_pred CceecCCCcCCCcccc-----chhHHHHHHhhccCCCccccceeeccccC
Q 008309 455 LYVMKPQREGGGNNIY-----GEDVKETLLRLKKDGTDEDAAYILMQRIF 499 (570)
Q Consensus 455 ~yVLKPQREGGGNNiY-----g~dI~~~L~~l~~~~~~e~~aYILMerI~ 499 (570)
-+|+||-+.|||..++ .+++...++.+... ....||+.+.|.
T Consensus 156 p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~~---~~~~~lvqe~i~ 202 (316)
T 1gsa_A 156 DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEH---GTRYCMAQNYLP 202 (316)
T ss_dssp SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTT---TTSCEEEEECCG
T ss_pred CEEEEECCCCCcccEEEecCChHHHHHHHHHHHhc---CCceEEEecccC
Confidence 5999999999998764 23566666655432 224577777775
No 9
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=28.50 E-value=63 Score=31.42 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeeceecccccchhhhHHHHHHHHH
Q 008309 194 SRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTISSSFSGLSCLVSELHRSLLI 258 (570)
Q Consensus 194 ~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTISaSFggLs~~vs~LHr~l~~ 258 (570)
.++.++..++.+. +-+++.|-|++++..++.+.-+|+|+.. +|.+++.- ..+=.++.+
T Consensus 259 ~~i~~~a~~~~~~-----lg~~~~~vD~~~~~~~g~~~vlEvN~~P-g~~~~~~~-~~i~~~l~~ 316 (324)
T 1z2n_X 259 AEMRDLAYKVRCA-----LGVQLCGIDFIKENEQGNPLVVDVNVFP-SYGGKVDF-DWFVEKVAL 316 (324)
T ss_dssp HHHHHHHHHHHHH-----HTCSEEEEEEECGGGCSSCEEEEEEESC-CTTSCBCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hCCcEEeeEEEEEcCCCCEEEEEEcCCC-CcCCCCCH-HHHHHHHHH
Confidence 4666666665432 3345789999998666778999999974 77777643 244444443
No 10
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=26.54 E-value=39 Score=33.50 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHhccCCCceee-eeeeccccccccCCccceEEeeceecccccc
Q 008309 191 PFTSRLLDIHSKMLELNKKEDIRL-GLHRSDYMLDEQTKSLLQIEVNTISSSFSGL 245 (570)
Q Consensus 191 ~Ft~~L~~I~~~v~~~g~~q~i~L-GL~RSDYMld~~~~~lKQVE~NTISaSFggL 245 (570)
+...++.++..++.+. +.+ |+.|-|++++ ++.+.-+|+||. -+|...
T Consensus 248 ~~~~~i~~~a~~~~~a-----lg~~G~~~vD~~~~--~g~~~vlEiN~r-pg~t~~ 295 (322)
T 2fb9_A 248 GTQETVQELALKAYKV-----LGVRGMARVDFFLA--EGELYLNELNTI-PGFTPT 295 (322)
T ss_dssp THHHHHHHHHHHHHHH-----HTCCSEEEEEEEEE--TTEEEEEEEESS-CCCSSS
T ss_pred HHHHHHHHHHHHHHHH-----hCCceEEEEEEEEE--CCcEEEEEEECC-CCCCcc
Confidence 4445565555555432 222 9999999998 677899999995 445444
No 11
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=24.74 E-value=27 Score=26.56 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=16.3
Q ss_pred HHHHHHhcccCCC-hhhHHHHHHHHHH
Q 008309 178 FLQESLSRTKKVD-PFTSRLLDIHSKM 203 (570)
Q Consensus 178 fL~~~l~~~~k~D-~Ft~~L~~I~~~v 203 (570)
=|+++|.-+.|.| +|..+|.+.|-..
T Consensus 13 Ql~qal~hLiknD~~Fl~~iHeAYl~s 39 (46)
T 2wx4_A 13 QFVQAFTYLIQNDKEFANKLHKAYLNG 39 (46)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 3455555556656 8888887777554
No 12
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=22.08 E-value=58 Score=32.39 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeeceeccccc
Q 008309 191 PFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTISSSFSG 244 (570)
Q Consensus 191 ~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTISaSFgg 244 (570)
+...++.++..++.+.= .+ -|++|-|+++|. ++.+.-+|+||. .+|.+
T Consensus 267 ~~~~~i~~~a~~~~~al---g~-~G~~~vD~~~~~-~g~~~viEiN~r-pg~t~ 314 (343)
T 1e4e_A 267 EERGRIQETVKKIYKTL---GC-RGLARVDMFLQD-NGRIVLNEVNTL-PGFTS 314 (343)
T ss_dssp HHHHHHHHHHHHHHHHT---TC-EEEEEEEEEECT-TCCEEEEEEESS-CCCST
T ss_pred HHHHHHHHHHHHHHHHc---CC-ceEEEEEEEEeC-CCCEEEEEeeCC-CCCCc
Confidence 33455666666654321 12 299999999975 466899999996 34433
No 13
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=21.65 E-value=31 Score=26.72 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=15.2
Q ss_pred HHHHHhcccCCC-hhhHHHHHHHHHHH
Q 008309 179 LQESLSRTKKVD-PFTSRLLDIHSKML 204 (570)
Q Consensus 179 L~~~l~~~~k~D-~Ft~~L~~I~~~v~ 204 (570)
|+++|-.+++.| +|..+|.+.|-...
T Consensus 16 l~qaLihLIqnD~~Fl~~IHeAYl~sl 42 (51)
T 2wx3_A 16 LQDTLIHLIKNDSSFLSTLHEVYLQVL 42 (51)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 444444555555 77777777765553
No 14
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=21.56 E-value=40 Score=33.98 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeecee
Q 008309 191 PFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTIS 239 (570)
Q Consensus 191 ~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTIS 239 (570)
+-..++-++-.++.+. =..+ |+.|-|+++|. ++.+.-+|+||+.
T Consensus 274 ~~~~~i~~~A~~~~~a---Lg~~-G~~~VDf~~~~-dg~~~vlEvNt~P 317 (357)
T 4fu0_A 274 EAEKRIQEAAVTIYKA---LGCS-GFSRVDMFYTP-SGEIVFNEVNTIP 317 (357)
T ss_dssp HHHHHHHHHHHHHHHH---TTCC-EEEEEEEEECT-TCCEEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHH---hCCc-ceEEEEEEEeC-CCCEEEEEEeCCC
Confidence 3445555555555322 0122 89999999985 5678899999985
No 15
>1rso_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity; NMR {Rattus norvegicus} SCOP: a.194.1.1
Probab=21.16 E-value=1.6e+02 Score=22.57 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=29.7
Q ss_pred HHhhHHHHHHHHhhC------CHHHHHHHHhcccCCChhhHHHHHHHHHHH
Q 008309 160 ELAPIFNELVDRVSL------DGKFLQESLSRTKKVDPFTSRLLDIHSKML 204 (570)
Q Consensus 160 ~lq~~~N~L~~rVS~------D~~fL~~~l~~~~k~D~Ft~~L~~I~~~v~ 204 (570)
.+++++..|-...+. |.+||++.|++ +=...|++||.++.
T Consensus 8 ~v~~vL~sL~~i~~l~~~~~~d~~fL~~ll~~-----~~L~~Llkvhdki~ 53 (56)
T 1rso_B 8 AVSQVLDSLEEIHALTDSSEKDLDFLHSVFQD-----QHLHTLLDLYDKIN 53 (56)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHC-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCHHHHHHHHcC-----HHHHHHHHHHHHHH
Confidence 566777777666653 55799999985 44567999999985
No 16
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=20.95 E-value=1.1e+02 Score=31.22 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=35.3
Q ss_pred CCceecCCCcCCCcccc----chhHHHHHHhhccCCCccc-cceeeccccCCCCcceEEEecCc
Q 008309 454 ELYVMKPQREGGGNNIY----GEDVKETLLRLKKDGTDED-AAYILMQRIFPSVSLTFLMRDGI 512 (570)
Q Consensus 454 ~~yVLKPQREGGGNNiY----g~dI~~~L~~l~~~~~~e~-~aYILMerI~Pp~~~n~lvR~g~ 512 (570)
--+|+||-+.|||..++ .+++.+.++.+... .. ..+|+.+.|.-+...-..+++|+
T Consensus 137 ~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~---~~~~~~lvEe~i~g~E~sv~~~~~G~ 197 (417)
T 2ip4_A 137 VPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNR---AEGGEVVVEEYLEGEEATVLALTDGE 197 (417)
T ss_dssp SSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTTS---SSCCCEEEEECCCSCEEEEEEEESSS
T ss_pred CCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhh---ccCCeEEEEECccCcEEEEEEEEeCC
Confidence 45899999999987765 35677777766421 11 45677666654444444455654
No 17
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=20.79 E-value=54 Score=32.75 Aligned_cols=43 Identities=30% Similarity=0.338 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHHHhccCCCceeeeeeeccccccccCCccceEEeece
Q 008309 191 PFTSRLLDIHSKMLELNKKEDIRLGLHRSDYMLDEQTKSLLQIEVNTI 238 (570)
Q Consensus 191 ~Ft~~L~~I~~~v~~~g~~q~i~LGL~RSDYMld~~~~~lKQVE~NTI 238 (570)
+...++.++-.++.+. =.++ |+.|-|++++.+ +.+.-+|+||.
T Consensus 267 ~~~~~i~~~a~~~~~~---lg~~-G~~~vD~~~~~~-g~~~vlEiN~r 309 (346)
T 3se7_A 267 TSRSLVQDTAKAVYRA---LGCR-GLSRVDLFLTED-GKVVLNEVNTF 309 (346)
T ss_dssp HHHHHHHHHHHHHHHH---HTCC-EEEEEEEEECTT-SCEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHH---hCCc-eEEEEEEEEeCC-CCEEEEEEeCC
Confidence 4445566555555432 1223 999999999854 67899999997
No 18
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=20.35 E-value=2.2e+02 Score=24.31 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhCCHHHHHHHHhcccCCChhhHHHHHHHHHHHhc
Q 008309 152 ESHFREACELAPIFNELVDRVSLDGKFLQESLSRTKKVDPFTSRLLDIHSKMLEL 206 (570)
Q Consensus 152 r~~F~~A~~lq~~~N~L~~rVS~D~~fL~~~l~~~~k~D~Ft~~L~~I~~~v~~~ 206 (570)
..+|++|.+.|+-+-+|+..+ .|.+.|.+.|+- .|+ ..+.+.-|+.+...
T Consensus 46 ~eL~~~c~~~qp~i~~li~~~-~dee~l~~lL~~---ND~-L~~vl~ry~~~~~~ 95 (103)
T 1wrd_A 46 QELNRTCRAMQQRVLELIPQI-ANEQLTEELLIV---NDN-LNNVFLRHERFERF 95 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHH---HHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHh---hHH-HHHHHHHHHHHhcC
Confidence 489999999999999999976 788898888874 344 44577778877544
Done!