Query 008310
Match_columns 570
No_of_seqs 249 out of 1369
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 22:11:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02251 pyrophosphate-depende 100.0 2E-155 4E-160 1273.1 53.5 547 13-561 21-567 (568)
2 PLN03028 pyrophosphate--fructo 100.0 2E-151 5E-156 1248.7 52.0 550 19-570 2-568 (610)
3 cd00765 Pyrophosphate_PFK Phos 100.0 2E-150 3E-155 1231.8 51.8 535 20-557 2-550 (550)
4 PRK07085 diphosphate--fructose 100.0 1E-148 3E-153 1220.2 52.8 538 20-562 2-552 (555)
5 TIGR02477 PFKA_PPi diphosphate 100.0 1E-147 3E-152 1210.2 51.6 532 24-558 1-539 (539)
6 PTZ00468 phosphofructokinase f 100.0 5E-143 1E-147 1232.8 52.7 550 1-556 1-563 (1328)
7 PTZ00287 6-phosphofructokinase 100.0 1E-137 3E-142 1195.6 43.7 549 16-569 759-1360(1419)
8 PTZ00287 6-phosphofructokinase 100.0 2E-136 4E-141 1185.8 50.6 548 3-560 85-639 (1419)
9 PTZ00468 phosphofructokinase f 100.0 8E-125 2E-129 1082.1 44.4 544 16-569 581-1242(1328)
10 cd00363 PFK Phosphofructokinas 100.0 6E-84 1.3E-88 677.3 35.8 336 91-522 1-337 (338)
11 COG0205 PfkA 6-phosphofructoki 100.0 4.5E-81 9.8E-86 651.6 30.3 342 90-521 2-344 (347)
12 PRK14072 6-phosphofructokinase 100.0 3.8E-80 8.2E-85 663.2 37.1 342 90-497 3-360 (416)
13 TIGR02483 PFK_mixed phosphofru 100.0 1.1E-76 2.5E-81 618.3 34.2 320 92-492 1-323 (324)
14 PRK03202 6-phosphofructokinase 100.0 5.2E-76 1.1E-80 612.1 34.7 301 90-495 1-303 (320)
15 PLN02884 6-phosphofructokinase 100.0 1.6E-75 3.4E-80 624.2 36.8 346 90-522 53-402 (411)
16 PTZ00286 6-phospho-1-fructokin 100.0 2.1E-75 4.6E-80 630.1 38.1 349 89-522 86-435 (459)
17 PLN02564 6-phosphofructokinase 100.0 2.3E-75 4.9E-80 629.1 37.9 356 88-524 85-442 (484)
18 TIGR02482 PFKA_ATP 6-phosphofr 100.0 5.7E-75 1.2E-79 599.4 34.1 299 92-492 1-300 (301)
19 PRK14071 6-phosphofructokinase 100.0 1.9E-74 4.2E-79 609.2 35.5 339 89-522 3-352 (360)
20 PRK06830 diphosphate--fructose 100.0 3.2E-74 7E-79 618.0 37.7 350 89-523 79-432 (443)
21 PRK06555 pyrophosphate--fructo 100.0 3E-74 6.5E-79 609.9 36.8 351 90-522 3-393 (403)
22 cd00763 Bacterial_PFK Phosphof 100.0 2.9E-74 6.3E-79 598.3 34.6 301 91-496 1-302 (317)
23 TIGR02478 6PF1K_euk 6-phosphof 100.0 3.6E-71 7.8E-76 627.3 36.2 352 91-533 1-378 (745)
24 PF00365 PFK: Phosphofructokin 100.0 9E-71 1.9E-75 564.8 30.3 281 91-463 1-282 (282)
25 cd00764 Eukaryotic_PFK Phospho 100.0 3.7E-70 8.1E-75 616.5 35.5 352 89-531 2-379 (762)
26 TIGR02478 6PF1K_euk 6-phosphof 100.0 7.7E-69 1.7E-73 608.3 36.0 329 87-507 386-732 (745)
27 cd00764 Eukaryotic_PFK Phospho 100.0 7.1E-65 1.5E-69 573.6 34.8 329 86-506 385-731 (762)
28 KOG2440 Pyrophosphate-dependen 100.0 7.2E-58 1.6E-62 502.2 5.0 549 15-569 40-630 (666)
29 KOG2440 Pyrophosphate-dependen 100.0 1.7E-34 3.7E-39 318.1 21.7 355 95-547 1-384 (666)
30 PRK04761 ppnK inorganic polyph 88.0 1.2 2.7E-05 45.6 6.5 55 170-241 5-65 (246)
31 cd01537 PBP1_Repressors_Sugar_ 87.4 26 0.00056 33.8 15.3 103 92-241 1-103 (264)
32 PRK00561 ppnK inorganic polyph 86.9 1.1 2.4E-05 46.3 5.5 54 173-243 17-75 (259)
33 COG3199 Predicted inorganic po 85.7 1.1 2.4E-05 47.8 4.9 52 168-225 84-135 (355)
34 PF13407 Peripla_BP_4: Peripla 84.7 38 0.00082 33.3 15.2 174 93-314 1-179 (257)
35 PF00465 Fe-ADH: Iron-containi 83.7 2.9 6.3E-05 44.8 7.2 57 169-225 63-133 (366)
36 PF01513 NAD_kinase: ATP-NAD k 83.2 1.2 2.5E-05 46.4 3.7 39 178-221 70-108 (285)
37 cd06321 PBP1_ABC_sugar_binding 82.2 50 0.0011 32.6 15.0 88 92-219 1-88 (271)
38 PRK02649 ppnK inorganic polyph 81.9 3.2 6.9E-05 43.9 6.4 52 184-252 68-121 (305)
39 PRK14077 pnk inorganic polypho 81.5 3.7 8E-05 43.0 6.7 53 184-253 64-118 (287)
40 PRK04885 ppnK inorganic polyph 81.5 2.9 6.3E-05 43.3 5.8 68 171-253 15-91 (265)
41 cd08180 PDD 1,3-propanediol de 80.3 5 0.00011 42.5 7.3 54 169-222 63-118 (332)
42 COG3155 ElbB Uncharacterized p 80.1 4.5 9.8E-05 39.0 6.1 95 90-200 1-101 (217)
43 PLN02935 Bifunctional NADH kin 79.9 3.9 8.5E-05 46.0 6.5 53 184-253 262-316 (508)
44 cd08189 Fe-ADH5 Iron-containin 78.9 5.9 0.00013 42.7 7.5 55 169-223 68-136 (374)
45 cd08551 Fe-ADH iron-containing 78.9 5.9 0.00013 42.5 7.4 55 169-223 65-132 (370)
46 cd08184 Fe-ADH3 Iron-containin 78.9 19 0.0004 38.7 11.2 39 169-207 63-104 (347)
47 PRK01911 ppnK inorganic polyph 78.7 5.4 0.00012 41.9 6.8 54 184-254 64-119 (292)
48 PRK14075 pnk inorganic polypho 78.5 4.2 9.1E-05 41.8 5.9 50 183-252 40-91 (256)
49 cd08177 MAR Maleylacetate redu 77.9 5.5 0.00012 42.4 6.7 53 169-226 62-114 (337)
50 PRK15454 ethanol dehydrogenase 76.2 7.6 0.00016 42.4 7.4 38 169-206 91-128 (395)
51 cd08172 GlyDH-like1 Glycerol d 75.8 6.9 0.00015 41.7 6.9 52 168-224 60-111 (347)
52 cd08193 HVD 5-hydroxyvalerate 75.6 8.2 0.00018 41.6 7.4 54 169-222 68-134 (376)
53 cd08186 Fe-ADH8 Iron-containin 74.7 9 0.00019 41.5 7.5 39 169-207 69-107 (383)
54 PRK00843 egsA NAD(P)-dependent 74.6 7.7 0.00017 41.5 6.8 52 169-225 72-123 (350)
55 cd08179 NADPH_BDH NADPH-depend 74.6 8.7 0.00019 41.4 7.3 37 169-205 66-102 (375)
56 cd08173 Gro1PDH Sn-glycerol-1- 74.5 7.8 0.00017 41.2 6.8 54 169-227 63-116 (339)
57 cd08182 HEPD Hydroxyethylphosp 74.3 9.2 0.0002 41.1 7.3 54 169-222 62-132 (367)
58 TIGR02638 lactal_redase lactal 74.2 9.4 0.0002 41.3 7.4 54 169-222 71-139 (379)
59 cd07766 DHQ_Fe-ADH Dehydroquin 74.0 8.6 0.00019 40.5 6.9 54 169-225 63-116 (332)
60 PRK09860 putative alcohol dehy 73.3 11 0.00023 41.0 7.6 37 169-205 73-109 (383)
61 PRK04539 ppnK inorganic polyph 73.2 4.1 8.9E-05 42.9 4.2 53 184-253 68-122 (296)
62 cd08176 LPO Lactadehyde:propan 72.8 11 0.00023 40.8 7.4 37 169-205 70-106 (377)
63 cd08178 AAD_C C-terminal alcoh 72.6 10 0.00022 41.3 7.3 36 169-204 63-98 (398)
64 PRK03501 ppnK inorganic polyph 72.3 8.7 0.00019 39.8 6.3 44 185-243 40-83 (264)
65 cd08185 Fe-ADH1 Iron-containin 72.1 10 0.00022 40.9 7.1 38 169-206 68-105 (380)
66 PRK03708 ppnK inorganic polyph 72.1 3.2 7E-05 43.2 3.1 43 183-243 56-98 (277)
67 PRK02231 ppnK inorganic polyph 72.0 4.6 9.9E-05 42.1 4.2 43 184-243 42-84 (272)
68 TIGR03822 AblA_like_2 lysine-2 71.9 1E+02 0.0022 32.7 14.4 166 94-272 139-310 (321)
69 TIGR01357 aroB 3-dehydroquinat 71.7 10 0.00022 40.3 6.9 52 169-223 63-117 (344)
70 cd08170 GlyDH Glycerol dehydro 71.7 8.4 0.00018 41.1 6.2 50 169-223 62-111 (351)
71 cd08181 PPD-like 1,3-propanedi 71.6 12 0.00026 40.1 7.5 54 169-222 68-133 (357)
72 PRK01231 ppnK inorganic polyph 71.4 9.8 0.00021 40.0 6.5 53 184-253 62-116 (295)
73 PLN02929 NADH kinase 70.9 3.6 7.8E-05 43.5 3.2 54 184-243 64-123 (301)
74 cd08194 Fe-ADH6 Iron-containin 70.4 13 0.00028 40.1 7.4 54 169-222 65-131 (375)
75 PRK15138 aldehyde reductase; P 70.2 13 0.00028 40.5 7.3 38 169-206 70-107 (387)
76 cd08183 Fe-ADH2 Iron-containin 69.7 13 0.00028 40.1 7.3 38 169-206 60-97 (374)
77 PRK03372 ppnK inorganic polyph 69.7 5.3 0.00011 42.3 4.1 53 184-253 72-126 (306)
78 PF07905 PucR: Purine cataboli 69.7 16 0.00036 33.0 6.8 94 122-221 11-107 (123)
79 PRK03378 ppnK inorganic polyph 69.7 5.8 0.00013 41.6 4.4 43 184-243 63-105 (292)
80 cd08171 GlyDH-like2 Glycerol d 68.7 12 0.00025 40.0 6.5 50 169-223 63-112 (345)
81 cd08195 DHQS Dehydroquinate sy 68.7 12 0.00027 39.8 6.7 52 169-223 67-121 (345)
82 PRK10624 L-1,2-propanediol oxi 67.0 17 0.00037 39.4 7.5 36 169-204 72-107 (382)
83 PRK00002 aroB 3-dehydroquinate 66.6 15 0.00032 39.5 6.8 52 169-223 74-128 (358)
84 PRK09423 gldA glycerol dehydro 66.3 14 0.00029 39.8 6.5 49 169-222 69-117 (366)
85 cd08196 DHQS-like1 Dehydroquin 65.7 17 0.00037 39.1 7.1 107 169-313 58-167 (346)
86 cd08192 Fe-ADH7 Iron-containin 65.4 19 0.0004 38.8 7.3 39 169-207 66-104 (370)
87 cd08550 GlyDH-like Glycerol_de 65.3 15 0.00033 39.2 6.6 50 169-223 62-111 (349)
88 TIGR01918 various_sel_PB selen 65.3 47 0.001 36.8 10.2 159 55-219 183-372 (431)
89 PRK07360 FO synthase subunit 2 64.6 1.2E+02 0.0026 32.9 13.3 189 88-297 106-331 (371)
90 TIGR03405 Phn_Fe-ADH phosphona 64.1 21 0.00044 38.4 7.3 38 169-206 63-102 (355)
91 cd08191 HHD 6-hydroxyhexanoate 63.9 21 0.00046 38.6 7.5 53 170-222 65-130 (386)
92 PRK13849 putative crown gall t 63.8 56 0.0012 33.0 10.0 126 192-327 11-147 (231)
93 cd08199 EEVS 2-epi-5-epi-valio 63.4 20 0.00044 38.6 7.1 52 169-223 69-124 (354)
94 cd06305 PBP1_methylthioribose_ 63.1 1.6E+02 0.0034 28.9 19.6 86 92-219 1-86 (273)
95 cd01575 PBP1_GntR Ligand-bindi 62.0 93 0.002 30.3 11.2 83 93-219 2-84 (268)
96 cd08187 BDH Butanol dehydrogen 61.9 23 0.0005 38.3 7.3 37 169-205 71-107 (382)
97 cd08190 HOT Hydroxyacid-oxoaci 61.7 23 0.00049 38.9 7.2 36 169-204 65-100 (414)
98 PRK02155 ppnK NAD(+)/NADH kina 61.4 9.7 0.00021 40.0 4.1 52 184-252 63-116 (291)
99 COG1454 EutG Alcohol dehydroge 60.8 24 0.00052 38.6 7.1 39 169-207 71-109 (377)
100 cd08188 Fe-ADH4 Iron-containin 60.7 26 0.00057 37.8 7.5 37 169-205 70-106 (377)
101 cd08549 G1PDH_related Glycerol 59.3 23 0.00051 37.6 6.7 52 169-226 66-117 (332)
102 cd01391 Periplasmic_Binding_Pr 58.8 1.6E+02 0.0035 27.7 12.4 119 92-251 1-121 (269)
103 cd08169 DHQ-like Dehydroquinat 58.3 28 0.00062 37.2 7.1 52 169-223 65-119 (344)
104 PRK13951 bifunctional shikimat 57.4 25 0.00053 39.7 6.7 113 123-244 172-289 (488)
105 PLN02727 NAD kinase 57.1 12 0.00025 45.2 4.2 53 184-253 743-797 (986)
106 cd08175 G1PDH Glycerol-1-phosp 56.9 23 0.00051 37.7 6.2 49 168-222 65-113 (348)
107 TIGR00519 asnASE_I L-asparagin 56.8 57 0.0012 35.0 9.1 47 169-217 60-108 (336)
108 cd08197 DOIS 2-deoxy-scyllo-in 56.6 31 0.00067 37.2 7.1 52 169-223 66-120 (355)
109 cd06308 PBP1_sensor_kinase_lik 56.4 2E+02 0.0044 28.3 12.6 25 171-195 43-67 (270)
110 PRK15458 tagatose 6-phosphate 56.4 3.1E+02 0.0067 30.6 14.5 140 91-266 15-172 (426)
111 PLN02834 3-dehydroquinate synt 56.3 30 0.00065 38.4 7.1 53 168-223 144-199 (433)
112 PRK11914 diacylglycerol kinase 55.9 34 0.00075 35.6 7.2 60 171-240 51-110 (306)
113 PRK06186 hypothetical protein; 55.2 13 0.00029 37.7 3.8 59 184-260 53-113 (229)
114 PF02401 LYTB: LytB protein; 54.6 27 0.00058 36.7 6.0 52 171-224 197-248 (281)
115 PRK06203 aroB 3-dehydroquinate 54.5 30 0.00064 37.9 6.6 50 170-222 94-146 (389)
116 PRK14076 pnk inorganic polypho 53.6 14 0.00031 42.3 4.1 43 184-243 348-390 (569)
117 cd08198 DHQS-like2 Dehydroquin 53.4 29 0.00062 37.8 6.2 50 170-222 82-134 (369)
118 COG4981 Enoyl reductase domain 51.8 1.3E+02 0.0027 34.7 10.7 86 182-291 121-217 (717)
119 PF02844 GARS_N: Phosphoribosy 51.5 17 0.00038 32.3 3.4 93 91-220 1-93 (100)
120 PRK13054 lipid kinase; Reviewe 51.5 32 0.0007 35.8 6.1 53 174-228 46-99 (300)
121 COG0061 nadF NAD kinase [Coenz 51.4 37 0.0008 35.4 6.4 57 183-258 54-110 (281)
122 PF02601 Exonuc_VII_L: Exonucl 51.0 87 0.0019 32.8 9.3 95 87-218 11-112 (319)
123 PF00781 DAGK_cat: Diacylglyce 49.5 33 0.00073 30.9 5.2 52 185-244 55-108 (130)
124 COG0371 GldA Glycerol dehydrog 49.5 36 0.00078 37.0 6.1 56 169-229 69-124 (360)
125 TIGR00147 lipid kinase, YegS/R 48.5 21 0.00045 36.8 4.0 44 180-228 53-98 (293)
126 PRK13805 bifunctional acetalde 48.1 47 0.001 40.1 7.5 37 169-205 524-560 (862)
127 PRK13337 putative lipid kinase 47.9 30 0.00066 36.0 5.2 52 174-228 47-98 (304)
128 cd01538 PBP1_ABC_xylose_bindin 47.2 97 0.0021 31.2 8.7 102 92-239 1-102 (288)
129 cd06315 PBP1_ABC_sugar_binding 47.2 2.5E+02 0.0054 28.1 11.6 67 91-195 1-67 (280)
130 PRK02645 ppnK inorganic polyph 46.9 23 0.0005 37.4 4.2 54 184-253 57-113 (305)
131 TIGR01917 gly_red_sel_B glycin 46.6 48 0.001 36.7 6.5 48 172-219 324-372 (431)
132 PRK10586 putative oxidoreducta 46.5 42 0.00091 36.3 6.2 57 169-231 72-128 (362)
133 PRK05647 purN phosphoribosylgl 46.4 83 0.0018 31.1 7.8 86 90-192 1-88 (200)
134 PRK01185 ppnK inorganic polyph 45.8 22 0.00049 37.0 3.8 50 184-253 52-103 (271)
135 cd06298 PBP1_CcpA_like Ligand- 45.3 83 0.0018 30.8 7.7 68 170-248 41-110 (268)
136 cd06281 PBP1_LacI_like_5 Ligan 44.6 2E+02 0.0044 28.3 10.4 90 92-224 1-90 (269)
137 TIGR01162 purE phosphoribosyla 44.5 45 0.00097 32.1 5.3 49 168-222 37-85 (156)
138 PF00532 Peripla_BP_1: Peripla 43.2 2.4E+02 0.0052 28.8 10.9 91 91-226 2-92 (279)
139 PRK15408 autoinducer 2-binding 43.0 4.3E+02 0.0093 27.9 14.7 106 90-240 23-128 (336)
140 PF01761 DHQ_synthase: 3-dehyd 42.9 56 0.0012 33.8 6.2 109 168-314 10-121 (260)
141 cd07995 TPK Thiamine pyrophosp 42.9 1.1E+02 0.0024 30.1 8.1 102 95-206 2-117 (208)
142 PRK10703 DNA-binding transcrip 41.9 4.1E+02 0.0088 27.3 13.3 71 89-197 58-128 (341)
143 PRK13055 putative lipid kinase 41.3 46 0.001 35.3 5.4 51 174-228 49-100 (334)
144 COG0504 PyrG CTP synthase (UTP 41.3 39 0.00085 38.1 4.9 116 138-274 295-421 (533)
145 cd08174 G1PDH-like Glycerol-1- 41.1 55 0.0012 34.6 6.0 53 171-228 61-114 (331)
146 COG0414 PanC Panthothenate syn 41.1 41 0.00088 35.2 4.7 49 243-292 5-54 (285)
147 cd06353 PBP1_BmpA_Med_like Per 41.0 3.1E+02 0.0068 27.8 11.3 121 89-258 119-239 (258)
148 TIGR02634 xylF D-xylose ABC tr 40.8 4.1E+02 0.0089 27.1 13.4 46 170-219 40-85 (302)
149 cd02038 FleN-like FleN is a me 40.8 2.8E+02 0.0061 25.2 10.4 70 191-296 8-77 (139)
150 TIGR03107 glu_aminopep glutamy 40.7 1.8E+02 0.0039 31.4 9.8 111 107-221 184-312 (350)
151 PF13685 Fe-ADH_2: Iron-contai 40.7 39 0.00085 34.8 4.6 55 169-228 60-114 (250)
152 PRK05670 anthranilate synthase 40.5 38 0.00082 32.8 4.3 51 181-246 40-90 (189)
153 TIGR02810 agaZ_gatZ D-tagatose 40.1 5.7E+02 0.012 28.5 14.7 139 92-266 12-168 (420)
154 PRK13057 putative lipid kinase 40.1 73 0.0016 32.9 6.6 59 170-239 37-95 (287)
155 PRK12767 carbamoyl phosphate s 39.7 2.9E+02 0.0063 28.5 11.1 43 169-212 54-96 (326)
156 TIGR00288 conserved hypothetic 39.7 25 0.00054 33.9 2.8 53 172-227 90-145 (160)
157 cd06320 PBP1_allose_binding Pe 39.5 3E+02 0.0065 27.1 10.8 90 92-221 1-90 (275)
158 COG1570 XseA Exonuclease VII, 38.7 2E+02 0.0043 32.2 9.8 95 87-218 132-230 (440)
159 COG2910 Putative NADH-flavin r 38.6 1.3E+02 0.0027 30.2 7.4 95 91-199 1-111 (211)
160 PLN02958 diacylglycerol kinase 38.4 1E+02 0.0022 34.7 7.8 112 111-229 100-215 (481)
161 TIGR00238 KamA family protein. 38.3 3E+02 0.0065 29.3 11.0 113 94-212 162-282 (331)
162 cd00537 MTHFR Methylenetetrahy 37.9 92 0.002 32.0 6.9 91 124-220 30-137 (274)
163 PRK07591 threonine synthase; V 37.9 1.1E+02 0.0023 33.9 7.7 114 174-295 126-250 (421)
164 TIGR00566 trpG_papA glutamine 37.6 42 0.0009 32.6 4.1 52 180-246 39-90 (188)
165 cd06299 PBP1_LacI_like_13 Liga 37.3 1.3E+02 0.0028 29.5 7.6 100 92-240 1-100 (265)
166 TIGR00640 acid_CoA_mut_C methy 37.2 1.3E+02 0.0028 27.9 7.0 48 148-196 46-94 (132)
167 PRK03910 D-cysteine desulfhydr 37.1 2.9E+02 0.0064 29.1 10.7 51 173-225 52-102 (331)
168 PRK11096 ansB L-asparaginase I 36.5 86 0.0019 33.9 6.6 43 169-211 83-127 (347)
169 cd06289 PBP1_MalI_like Ligand- 36.5 1.6E+02 0.0034 28.8 8.1 44 171-219 42-85 (268)
170 PRK13371 4-hydroxy-3-methylbut 36.2 81 0.0018 34.6 6.3 55 171-226 275-329 (387)
171 PRK14021 bifunctional shikimat 36.1 84 0.0018 35.9 6.8 52 169-223 251-305 (542)
172 PRK13059 putative lipid kinase 35.8 66 0.0014 33.5 5.4 44 182-228 54-97 (295)
173 TIGR03702 lip_kinase_YegS lipi 35.8 75 0.0016 32.9 5.9 54 174-229 42-96 (293)
174 PLN02327 CTP synthase 35.7 43 0.00094 38.4 4.3 69 171-259 351-421 (557)
175 PRK05637 anthranilate synthase 35.6 61 0.0013 32.2 5.0 52 180-246 40-91 (208)
176 PRK10355 xylF D-xylose transpo 35.2 5.4E+02 0.012 26.8 13.9 93 89-223 24-116 (330)
177 TIGR00215 lpxB lipid-A-disacch 34.9 54 0.0012 35.5 4.8 137 95-256 8-146 (385)
178 PLN02821 1-hydroxy-2-methyl-2- 34.7 74 0.0016 35.6 5.8 52 172-224 350-401 (460)
179 cd06167 LabA_like LabA_like pr 34.6 63 0.0014 29.5 4.6 50 174-226 89-138 (149)
180 PLN02735 carbamoyl-phosphate s 34.5 3.2E+02 0.007 34.2 11.8 47 173-219 638-692 (1102)
181 KOG2387 CTP synthase (UTP-ammo 34.4 86 0.0019 35.1 6.1 90 169-296 350-441 (585)
182 PRK01045 ispH 4-hydroxy-3-meth 33.0 40 0.00087 35.7 3.3 80 171-252 198-279 (298)
183 COG1609 PurR Transcriptional r 32.6 77 0.0017 33.6 5.4 66 89-192 57-122 (333)
184 CHL00101 trpG anthranilate syn 32.1 52 0.0011 31.9 3.8 51 180-245 39-89 (190)
185 PRK00861 putative lipid kinase 32.0 83 0.0018 32.6 5.5 57 174-240 47-103 (300)
186 COG1844 Uncharacterized protei 31.9 2.8E+02 0.0062 25.5 7.9 64 187-269 2-65 (125)
187 PF04263 TPK_catalytic: Thiami 31.8 1.1E+02 0.0023 28.0 5.5 90 123-217 17-121 (123)
188 PF00731 AIRC: AIR carboxylase 31.6 67 0.0015 30.6 4.2 49 168-222 39-87 (150)
189 PRK05294 carB carbamoyl phosph 31.3 3.4E+02 0.0073 33.8 11.3 48 172-225 617-666 (1066)
190 cd06267 PBP1_LacI_sugar_bindin 31.2 4.7E+02 0.01 24.9 13.4 84 92-219 1-84 (264)
191 PRK06774 para-aminobenzoate sy 31.0 45 0.00097 32.3 3.1 51 180-245 39-89 (191)
192 PF00710 Asparaginase: Asparag 30.9 1E+02 0.0022 32.5 6.0 50 169-219 55-106 (313)
193 cd01574 PBP1_LacI Ligand-bindi 30.8 5.1E+02 0.011 25.1 11.0 85 92-219 1-85 (264)
194 KOG3857 Alcohol dehydrogenase, 30.7 1.1E+02 0.0024 33.4 6.0 39 169-207 112-150 (465)
195 PF02569 Pantoate_ligase: Pant 30.6 70 0.0015 33.6 4.6 38 254-291 15-53 (280)
196 TIGR01378 thi_PPkinase thiamin 30.3 2.1E+02 0.0046 28.2 7.8 81 123-206 19-113 (203)
197 cd06283 PBP1_RegR_EndR_KdgR_li 29.9 4.6E+02 0.01 25.4 10.2 99 93-240 2-100 (267)
198 smart00729 Elp3 Elongator prot 29.9 3.2E+02 0.0069 25.3 8.7 45 169-213 134-182 (216)
199 PF01936 NYN: NYN domain; Int 29.7 36 0.00078 30.6 2.0 49 175-226 86-134 (146)
200 PF04405 ScdA_N: Domain of Unk 29.7 52 0.0011 26.1 2.7 28 172-201 11-38 (56)
201 smart00046 DAGKc Diacylglycero 29.3 1.1E+02 0.0024 27.5 5.2 43 184-229 49-94 (124)
202 PRK12815 carB carbamoyl phosph 29.2 2.8E+02 0.0061 34.5 10.1 95 88-205 5-104 (1068)
203 cd06292 PBP1_LacI_like_10 Liga 29.0 5.5E+02 0.012 25.1 13.9 87 92-219 1-89 (273)
204 PF13768 VWA_3: von Willebrand 28.9 2.9E+02 0.0062 25.1 8.0 92 106-209 18-121 (155)
205 PRK12390 1-aminocyclopropane-1 28.8 4.1E+02 0.0088 28.1 10.1 44 173-217 55-98 (337)
206 PRK03359 putative electron tra 28.8 1.4E+02 0.0031 30.8 6.4 53 175-228 71-128 (256)
207 PF02608 Bmp: Basic membrane p 28.8 6.5E+02 0.014 26.2 11.5 125 90-258 126-252 (306)
208 cd01542 PBP1_TreR_like Ligand- 28.5 5.5E+02 0.012 24.8 13.2 83 93-219 2-84 (259)
209 KOG2998 Uncharacterized conser 27.9 1.9E+02 0.0041 30.7 7.1 73 376-465 186-263 (302)
210 PRK09432 metF 5,10-methylenete 27.9 1.4E+02 0.003 31.5 6.3 81 107-195 39-121 (296)
211 PF04321 RmlD_sub_bind: RmlD s 27.4 6.9E+02 0.015 25.6 15.0 150 173-331 40-216 (286)
212 cd06278 PBP1_LacI_like_2 Ligan 27.3 3.8E+02 0.0083 25.9 9.1 97 93-239 2-98 (266)
213 PRK00286 xseA exodeoxyribonucl 27.2 2.5E+02 0.0053 31.0 8.4 94 88-218 133-229 (438)
214 cd06312 PBP1_ABC_sugar_binding 27.0 6.1E+02 0.013 24.9 10.8 87 92-219 1-88 (271)
215 PLN02335 anthranilate synthase 26.9 76 0.0016 31.8 4.0 50 181-245 59-108 (222)
216 cd06273 PBP1_GntR_like_1 This 26.8 3E+02 0.0065 26.8 8.3 43 171-219 42-84 (268)
217 cd06307 PBP1_uncharacterized_s 26.7 2.6E+02 0.0057 27.5 7.9 25 171-196 46-70 (275)
218 TIGR00732 dprA DNA protecting 26.6 6.5E+02 0.014 25.2 10.6 138 68-225 27-193 (220)
219 cd03822 GT1_ecORF704_like This 26.4 4.8E+02 0.011 26.1 9.9 83 92-192 1-84 (366)
220 smart00870 Asparaginase Aspara 26.3 1.6E+02 0.0034 31.4 6.4 49 169-218 58-110 (323)
221 PHA02518 ParA-like protein; Pr 26.3 5.6E+02 0.012 24.3 10.4 91 192-296 10-109 (211)
222 TIGR00520 asnASE_II L-asparagi 26.2 1.5E+02 0.0033 32.0 6.4 48 169-218 86-137 (349)
223 cd02042 ParA ParA and ParB of 26.1 4E+02 0.0086 22.4 9.7 64 192-296 9-72 (104)
224 PF01261 AP_endonuc_2: Xylose 25.5 5.5E+02 0.012 23.9 10.3 49 178-226 2-55 (213)
225 TIGR02637 RhaS rhamnose ABC tr 25.2 4.5E+02 0.0098 26.5 9.5 87 93-219 1-87 (302)
226 PRK12360 4-hydroxy-3-methylbut 25.1 50 0.0011 34.6 2.4 54 171-226 197-250 (281)
227 PF04009 DUF356: Protein of un 24.7 2.2E+02 0.0048 25.7 6.0 39 188-228 1-39 (107)
228 PRK10423 transcriptional repre 24.7 7.4E+02 0.016 25.1 12.0 70 89-196 55-124 (327)
229 cd00411 Asparaginase Asparagin 24.6 1.5E+02 0.0032 31.6 5.9 43 169-211 61-105 (323)
230 TIGR00216 ispH_lytB (E)-4-hydr 24.5 1.4E+02 0.003 31.4 5.5 52 171-224 196-247 (280)
231 PLN02735 carbamoyl-phosphate s 24.5 3.5E+02 0.0076 33.9 9.7 106 86-220 19-135 (1102)
232 TIGR00215 lpxB lipid-A-disacch 24.5 8.6E+02 0.019 26.2 11.8 104 188-294 9-123 (385)
233 PRK10401 DNA-binding transcrip 24.4 6.2E+02 0.013 26.1 10.5 68 89-194 58-125 (346)
234 cd01391 Periplasmic_Binding_Pr 24.3 3.5E+02 0.0077 25.3 8.0 48 171-222 168-219 (269)
235 TIGR00237 xseA exodeoxyribonuc 24.3 3.7E+02 0.0081 29.8 9.1 95 87-218 126-224 (432)
236 cd01536 PBP1_ABC_sugar_binding 24.3 6.4E+02 0.014 24.2 13.7 86 92-219 1-86 (267)
237 TIGR03127 RuMP_HxlB 6-phospho 24.2 5.5E+02 0.012 24.2 9.3 55 169-227 16-70 (179)
238 PF02310 B12-binding: B12 bind 24.1 4.7E+02 0.01 22.6 8.8 108 92-218 2-111 (121)
239 COG1597 LCB5 Sphingosine kinas 24.0 89 0.0019 32.9 4.0 101 124-240 4-105 (301)
240 PRK13293 F420-0--gamma-glutamy 23.8 1.4E+02 0.003 30.9 5.1 56 260-327 89-148 (245)
241 PRK06027 purU formyltetrahydro 23.8 2.9E+02 0.0063 28.9 7.8 122 56-204 62-184 (286)
242 COG0763 LpxB Lipid A disacchar 23.6 1.3E+02 0.0029 33.0 5.2 109 91-218 2-116 (381)
243 cd02071 MM_CoA_mut_B12_BD meth 23.6 2.4E+02 0.0053 25.2 6.3 41 158-198 52-93 (122)
244 COG5012 Predicted cobalamin bi 23.3 1.2E+02 0.0025 31.0 4.4 88 133-228 109-202 (227)
245 TIGR00676 fadh2 5,10-methylene 23.3 1.3E+02 0.0027 31.2 4.9 91 124-220 30-134 (272)
246 TIGR01916 F420_cofE F420-0:gam 23.1 2.6E+02 0.0056 28.9 6.9 56 261-328 89-148 (243)
247 KOG1342 Histone deacetylase co 23.1 1.2E+02 0.0027 33.2 4.8 70 156-232 261-332 (425)
248 cd01743 GATase1_Anthranilate_S 23.0 89 0.0019 29.9 3.5 47 182-246 40-89 (184)
249 PRK15052 D-tagatose-1,6-bispho 22.9 1.1E+03 0.024 26.4 14.7 146 92-273 13-179 (421)
250 cd06564 GH20_DspB_LnbB-like Gl 22.9 5.7E+02 0.012 27.0 9.9 35 235-270 133-170 (326)
251 PRK12361 hypothetical protein; 22.8 1.3E+02 0.0028 34.2 5.4 52 173-229 286-337 (547)
252 PRK02261 methylaspartate mutas 22.7 6.2E+02 0.013 23.4 9.6 114 90-221 3-120 (137)
253 cd06533 Glyco_transf_WecG_TagA 22.7 2.1E+02 0.0046 27.3 6.0 88 90-193 46-133 (171)
254 TIGR00176 mobB molybdopterin-g 22.7 2.6E+02 0.0056 26.3 6.5 48 188-242 2-51 (155)
255 KOG4435 Predicted lipid kinase 22.7 1.5E+02 0.0033 32.8 5.4 53 169-224 102-154 (535)
256 PRK10014 DNA-binding transcrip 22.6 8.3E+02 0.018 24.9 13.4 71 88-196 62-132 (342)
257 cd02072 Glm_B12_BD B12 binding 22.6 2.4E+02 0.0052 26.1 6.1 48 147-195 42-90 (128)
258 COG0129 IlvD Dihydroxyacid deh 22.6 2.1E+02 0.0046 33.0 6.8 112 89-221 41-153 (575)
259 cd01744 GATase1_CPSase Small c 22.5 1.3E+02 0.0028 28.8 4.5 50 181-247 36-88 (178)
260 cd06319 PBP1_ABC_sugar_binding 22.3 5.7E+02 0.012 25.0 9.3 27 92-118 1-27 (277)
261 PHA02728 uncharacterized prote 22.3 46 0.00099 30.8 1.2 15 218-232 43-57 (184)
262 TIGR02417 fruct_sucro_rep D-fr 22.1 1.7E+02 0.0037 29.9 5.7 69 89-195 59-127 (327)
263 PF00117 GATase: Glutamine ami 22.1 64 0.0014 30.8 2.3 50 181-247 39-91 (192)
264 cd06317 PBP1_ABC_sugar_binding 21.9 6.5E+02 0.014 24.5 9.6 65 93-195 2-67 (275)
265 PRK04155 chaperone protein Hch 21.7 7.6E+02 0.017 25.9 10.4 40 173-212 134-181 (287)
266 PRK08007 para-aminobenzoate sy 21.7 92 0.002 30.2 3.4 53 179-246 38-90 (187)
267 cd06302 PBP1_LsrB_Quorum_Sensi 21.7 8.4E+02 0.018 24.6 13.5 87 92-219 1-87 (298)
268 COG1979 Uncharacterized oxidor 21.6 1.2E+02 0.0026 32.8 4.3 38 170-207 71-108 (384)
269 PRK14974 cell division protein 21.3 4.4E+02 0.0096 28.3 8.7 28 186-213 141-170 (336)
270 PRK07765 para-aminobenzoate sy 21.3 1.3E+02 0.0027 30.1 4.3 48 183-247 45-95 (214)
271 COG0028 IlvB Thiamine pyrophos 21.3 4.5E+02 0.0098 30.2 9.3 49 171-221 188-236 (550)
272 PRK10481 hypothetical protein; 21.3 4.3E+02 0.0093 26.9 8.1 107 92-217 92-210 (224)
273 cd06301 PBP1_rhizopine_binding 21.2 7.7E+02 0.017 24.0 13.6 87 92-219 1-87 (272)
274 cd06284 PBP1_LacI_like_6 Ligan 21.0 7.5E+02 0.016 23.8 13.5 83 93-220 2-84 (267)
275 cd06323 PBP1_ribose_binding Pe 20.9 7.6E+02 0.016 23.8 14.3 86 92-219 1-86 (268)
276 PRK15395 methyl-galactoside AB 20.9 9.2E+02 0.02 25.0 10.9 91 89-220 23-113 (330)
277 cd01672 TMPK Thymidine monopho 20.8 1.2E+02 0.0027 28.3 4.0 34 188-221 3-38 (200)
278 PF03808 Glyco_tran_WecB: Glyc 20.7 7.4E+02 0.016 23.6 9.5 26 108-133 60-85 (172)
279 TIGR02955 TMAO_TorT TMAO reduc 20.7 7.1E+02 0.015 25.1 9.8 24 171-194 44-67 (295)
280 PRK03910 D-cysteine desulfhydr 20.6 1.7E+02 0.0036 31.0 5.3 36 184-221 183-218 (331)
281 TIGR02432 lysidine_TilS_N tRNA 20.6 1.4E+02 0.0031 28.4 4.4 31 188-218 4-34 (189)
282 cd06300 PBP1_ABC_sugar_binding 20.6 8E+02 0.017 23.9 13.8 94 92-222 1-94 (272)
283 TIGR02826 RNR_activ_nrdG3 anae 20.6 2E+02 0.0043 27.1 5.2 45 169-215 47-92 (147)
284 PF00186 DHFR_1: Dihydrofolate 20.5 85 0.0018 30.1 2.8 53 172-232 79-131 (161)
285 cd01539 PBP1_GGBP Periplasmic 20.5 9E+02 0.019 24.5 11.3 88 92-219 1-88 (303)
286 cd06277 PBP1_LacI_like_1 Ligan 20.3 2.1E+02 0.0046 28.0 5.8 41 172-219 46-86 (268)
287 TIGR01630 psiM2_ORF9 phage unc 20.1 3.3E+02 0.0072 24.8 6.6 63 159-222 18-81 (142)
No 1
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=1.7e-155 Score=1273.07 Aligned_cols=547 Identities=78% Similarity=1.282 Sum_probs=531.1
Q ss_pred ccCccccCCCHhhhhhcCCCCCCccccccccceecCCCCCCCCChhHHHhhCCcccCCCeeEEecCCccccccCCCCccE
Q 008310 13 AAGRVASIYTELQISRMNVSLPLPSVLKNTFNVVDDAASSAAGDPEEIKKLFPKFYGQPSARLVECDPMACTLMENKSLK 92 (570)
Q Consensus 13 ~~~~~~~~~s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (570)
...++.+.+|+||++|+.|+|+||++|++++++.+++++.++.++++|+++|||||++|.++|.++.+ ...+...++|
T Consensus 21 ~~~~~~~~~s~~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~--~~~~~~~~~~ 98 (568)
T PLN02251 21 ASGRDASVYSEVQSSRIDHALPLPSVLKGPFKIVDGPPSSAAGNPEEIAKLFPNLFGQPSVMLVPSQA--DALSSDQKLK 98 (568)
T ss_pred hhhhhhhccCHHHHHHHhCCCCCChhhcCceEEEecCcccccCCHHHHHHhChHhhCCceEEEeeccC--ccccccccce
Confidence 56777888999999999999999999999999999999999999999999999999999999998531 1223346689
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChHH
Q 008310 93 IGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQ 172 (570)
Q Consensus 93 IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~ 172 (570)
||||+||||||||||||+|++++++..+++++||||++||+||+++++++||++.++.|+|+|||++|||+|++++++++
T Consensus 99 IGIv~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~ 178 (568)
T PLN02251 99 IGVVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQ 178 (568)
T ss_pred EEEECcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHHHH
Q 008310 173 FKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNV 252 (570)
Q Consensus 173 ~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ni 252 (570)
+++++++|++++||+||+||||||+++|+.|+|||+++|++|+||||||||||||+++++|+|||||||+++++++|+||
T Consensus 179 ~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~~I~ni 258 (568)
T PLN02251 179 FKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNV 258 (568)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Q 008310 253 MTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISEGL 332 (570)
Q Consensus 253 ~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl 332 (570)
++||.|++|||||||||||+||||||+||||||||+|||||+++.++++|++|++.||+.|++|+..|++|||||||||+
T Consensus 259 ~~da~S~~k~~~~VevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~~gk~~gvIlVsEGl 338 (568)
T PLN02251 259 MIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYGVILIPEGL 338 (568)
T ss_pred HHHHHhhCCEEEEEEeCCCchHHHHHHHHHhhCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHHHHH
Q 008310 333 IDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQMVEAE 412 (570)
Q Consensus 333 ~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV~~~ 412 (570)
++||||++.||+|+|++++++..++++.+.++||+|++++|++||++||+||+.+||+|||+|+++|+||++|++||+++
T Consensus 339 ie~ipe~~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~lP~~i~~qll~~rD~~G~~qls~Iete~lL~~lV~~~ 418 (568)
T PLN02251 339 IDFIPEVQHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETE 418 (568)
T ss_pred hhhCchHHHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHhCcHHHHHHhccccCCCCCeeecccHHHHHHHHHHHHH
Confidence 99999999999999999999888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccchHhh
Q 008310 413 LNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTALTSL 492 (570)
Q Consensus 413 L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~~vPl~~~ 492 (570)
|++|+.+|+|+++|++++|+|||+|||+.||+||++|||+||+.|+.++.+|+||||++|+|+..++++|.++++||++|
T Consensus 419 L~~rk~~~~~~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~li~~G~tGyM~~I~nl~~~~~~w~~~~vpl~~~ 498 (568)
T PLN02251 419 LEKRKQEGSYKGHFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVGGTALTSL 498 (568)
T ss_pred HhhhccccccccccceeEEecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCcceeEEcCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCcccceeeceeccCChhhHHHHHhhccccccccccCCCcccccCCCCCCCcceeeecccCC
Q 008310 493 MHVERRHGKFKPVIKKAMVELEGKPFKTFASLREDWTIKNLYASPGPIQFSGPTANDINHTLMLELGQG 561 (570)
Q Consensus 493 ~~~e~~~g~~~p~i~~~~V~l~~~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~~~~~~tl~~e~~~~ 561 (570)
||+||++|+.+|||+|++|||+|++|++|+++|++|+++|+||+||||||+||.+|++++||.||+++.
T Consensus 499 mn~e~~~~~~~pvi~k~~v~l~g~~f~~~~~~r~~w~~~d~y~~pgpiQ~~g~~~~~~~~tl~~e~~~~ 567 (568)
T PLN02251 499 MDVERRHGKFKPVIKKAMVELEGAPFKKFASLRDEWALKNRYISPGPIQFSGPGSDATNHTLKLELGAQ 567 (568)
T ss_pred hhhhhhCCCcCccccccccCCCCHHHHHHHHHHHHhhhcCcCcCCCCccccCcccCCCceEEEecccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999863
No 2
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=2.4e-151 Score=1248.74 Aligned_cols=550 Identities=43% Similarity=0.706 Sum_probs=522.4
Q ss_pred cCCCHhhhhhcCCCCCCcccccc-ccceecCCCCCCCCCh--hHHHhhCCcccCCCeeEEecCC---ccccccCCCCccE
Q 008310 19 SIYTELQISRMNVSLPLPSVLKN-TFNVVDDAASSAAGDP--EEIKKLFPKFYGQPSARLVECD---PMACTLMENKSLK 92 (570)
Q Consensus 19 ~~~s~l~~~r~~~~p~lp~~l~~-~~~~~~~~~~~~~~~~--~~i~~~fp~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 92 (570)
.++|+||+.|+.|+|+||++|++ .+++++++++++..++ ++|+++|||||++|+++|.++. ...........+|
T Consensus 2 ~~~s~~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~r 81 (610)
T PLN03028 2 RELSGLQKLRSLYQPELPPCLQGTTVRVELGDATTAADPADAHAISRAFPHTYGQPLAHFLRATAKVPDAQVITEHPAVR 81 (610)
T ss_pred CCCCHHHHHHHhCCCCCChhhCCCcEEEeeCCCccccCcccHHHHHHhChhhhCCcceEEecccccCccccccCCCcccE
Confidence 47899999999999999999988 5899999999888766 9999999999999999999843 1112222344589
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChHH
Q 008310 93 IGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQ 172 (570)
Q Consensus 93 IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~ 172 (570)
||||+||||||||||||+|++++++..+++++||||++||.||+++++++||++.++.|+|+|||++|||+|.++.++++
T Consensus 82 IgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~~iLGSsR~~l~~~e~ 161 (610)
T PLN03028 82 VGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQ 161 (610)
T ss_pred EEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHHHHHHHhcCCchhccCcCCCcCCHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHHHH
Q 008310 173 FKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNV 252 (570)
Q Consensus 173 ~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ni 252 (570)
+++++++|++++||+||+||||||+++|+.|+|||++.+++++||||||||||||+++.+|+|||||||+++++++|+||
T Consensus 162 ~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~~~~td~s~GFdTA~k~~ae~I~ni 241 (610)
T PLN03028 162 VNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNV 241 (610)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888999999999999999999
Q ss_pred HHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Q 008310 253 MTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISEGL 332 (570)
Q Consensus 253 ~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl 332 (570)
++||.|+++||||||||||+||||||+||||||||+||||||+..+++||.+|++.|++.|++|++.||+|||||||||+
T Consensus 242 ~~dA~S~~~~~~~VevMGR~aG~LAl~~aLat~pniilI~EE~~~~~~tL~~iv~~i~~~I~~r~~~gk~~gvIvVsEGl 321 (610)
T PLN03028 242 CTDALSAEKYYYFIRLMGRKASHVALECALQSHPNMVILGEEVAASKLTLFDITKQICDAVQARAEQDKNHGVILIPEGL 321 (610)
T ss_pred HHHHHhhCCeEEEEEeCCcchHHHHHHHHHhcCCCEEEecCcccccccccchHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHHHHH
Q 008310 333 IDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQMVEAE 412 (570)
Q Consensus 333 ~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV~~~ 412 (570)
+++||||+.||+|+|+++.++... ..+.++||+|++++|++||.+||+||+.+||+|||+|+++|+||++|++||+++
T Consensus 322 ie~ipe~~~li~el~~~~~~g~~~--~~~~~~ls~~~~~l~~~lP~~i~~qLl~~~D~~G~~qls~i~te~lL~~lV~~e 399 (610)
T PLN03028 322 IESIPEVYALLQEIHGLLKQGVSV--DNISSQLSPWASALFEFLPPFIKKQLLLHPESDDSAQLSQIETEKLLAQLVETE 399 (610)
T ss_pred cccCchHHHHHHHHHHHHhcCcch--hhhhhhcCHHHHHHHhhccHHHHHHHhhccCCCCCeeecchhHHHHHHHHHHHH
Confidence 999999999999999998655322 235678999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCcccc-ccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccchHh
Q 008310 413 LNKRKQKGTYKG-QFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTALTS 491 (570)
Q Consensus 413 L~~r~~~g~y~~-~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~~vPl~~ 491 (570)
|.+|+++|+|++ +|++++|+|||+|||+.||+||++|||+||+.|+.++.+|+||||++|+|++.++++|+++++||++
T Consensus 400 L~~r~~~g~~~~~~f~~~~h~~GYe~R~~~PS~fD~~yay~LG~~A~~l~~~G~tG~M~~I~nl~~~~~~w~~~~vPl~~ 479 (610)
T PLN03028 400 MNKRTKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPITA 479 (610)
T ss_pred HHHHhhccccccccccccccccChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCCeEEEEcccCHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhc------CCcccceeeceeccCChhhHHHHHhhccccccccccCCCcccccCCCCCCCcceeeeccc----CC
Q 008310 492 LMHVERRH------GKFKPVIKKAMVELEGKPFKTFASLREDWTIKNLYASPGPIQFSGPTANDINHTLMLELG----QG 561 (570)
Q Consensus 492 ~~~~e~~~------g~~~p~i~~~~V~l~~~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~~~~~~tl~~e~~----~~ 561 (570)
|||+|||+ |+.+|+|+|++|||+|++|++|+++|++|+++|+|++||||||+||.+|++++||.+|++ .+
T Consensus 480 ~m~~~~~~~~~~~~~~~~p~i~~~~v~l~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~tl~~e~~~~~~~~ 559 (610)
T PLN03028 480 MMSVKRWSRGPGASQIGKPAIHPAPVDLKGKAYELLRQNASSFLMDDLYRNPGPLQFDGPGADAKPITLCVEDQDYMGRI 559 (610)
T ss_pred HhhHHhhcccccccccCCceeeccccCCCcHHHHHHHHHHHHhhccCcCcCCCCccccCCcccCCceEeehhhhhhHHHH
Confidence 99999997 788999999999999999999999999999999999999999999999999999999976 58
Q ss_pred chhHhhhcC
Q 008310 562 QPAQAKLNK 570 (570)
Q Consensus 562 ~~~~~~~~~ 570 (570)
+.+++||++
T Consensus 560 ~~~~~~~~~ 568 (610)
T PLN03028 560 KKLQEYLDK 568 (610)
T ss_pred HHHHHHHHH
Confidence 889999974
No 3
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=1.5e-150 Score=1231.79 Aligned_cols=535 Identities=69% Similarity=1.177 Sum_probs=516.7
Q ss_pred CCCHhhhhhcCCCCCCcccccc---ccceecCCCCCCCCChhHHHhhCCcccCCCeeEEecCCccccccCCCCccEEEEE
Q 008310 20 IYTELQISRMNVSLPLPSVLKN---TFNVVDDAASSAAGDPEEIKKLFPKFYGQPSARLVECDPMACTLMENKSLKIGVV 96 (570)
Q Consensus 20 ~~s~l~~~r~~~~p~lp~~l~~---~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~IGIv 96 (570)
+.|+||++|+.|+|+||++|++ .+++.++++++++.++++|+++|||||++|+++|++... ......++||||+
T Consensus 2 ~~s~~~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~~~~~p~~~~~~~~~---~~~~~~~~~IgIl 78 (550)
T cd00765 2 VYSLVQQERINYTPKLPSVLKGDFNNIKIVEGPATSAAGDPDALAKLFPGTYGQPSVAFVPDQD---APSSAPKLKIGIV 78 (550)
T ss_pred CccHHHHHHHhcCCCCChhhcCCccceEEeecCcccccCCHHHHHHhChhhhCCcceEEeecCC---cccCCCCCEEEEE
Confidence 4689999999999999999988 579999999999999999999999999999999999642 2233556899999
Q ss_pred ecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChHHHHHH
Q 008310 97 LSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQA 176 (570)
Q Consensus 97 ~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~~~~~ 176 (570)
+|||||||+||||+|+++++++.+++++||||++||.||+++++++||++.++.|+|+|||++|||+|+++.++++++++
T Consensus 79 ~SGG~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd~LGs~R~k~~~~e~~~~i 158 (550)
T cd00765 79 LSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFKQA 158 (550)
T ss_pred CCCCCcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChhhhcCcCCCCCCHHHHHHH
Confidence 99999999999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 008310 177 EETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDA 256 (570)
Q Consensus 177 ~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ni~~Da 256 (570)
+++|++++||+||+|||||||++|+.|+|||+++|++++||||||||||||+++++|+|||||||+++++++|+||++|+
T Consensus 159 ~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~~a~~I~ni~~Da 238 (550)
T cd00765 159 EETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDA 238 (550)
T ss_pred HHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred hhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCc
Q 008310 257 RSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISEGLIDFI 336 (570)
Q Consensus 257 ~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl~~~i 336 (570)
.|+++||||||||||+||||||+||||||||+|||||++++++++|++|+++||+.|++|+.+||+|||||||||+++||
T Consensus 239 ~s~~~~~~~VEvMGR~aG~LAl~~aLat~p~lilIpE~~~~~~~~L~~v~~~I~~~i~~r~~~gk~~gvIvVsEGlie~i 318 (550)
T cd00765 239 RSTGKYWHFVKLMGRSASHIALECALKTHPNICIISEEVSAQKQTLKNITDYMVDVICKRAELGYNFGVVLVPEGLIEFI 318 (550)
T ss_pred HHcCCcEEEEEeCCCchHHHHHHHHHhcCCCEEEecCcccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhch---------HHHHHHhhhcCCCCCCcccchhhhHHHHHH
Q 008310 337 PEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFP---------EEIQKQLLLERDPHGNVQVAKIETERMLIQ 407 (570)
Q Consensus 337 pe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp---------~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~ 407 (570)
|||+.||+|+|++++++..+.++.+.++|++|++++|.+|| ++|++||+.+||+|||+|+++|+||++|++
T Consensus 319 pe~~~Li~el~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~~f~~lp~~i~~ql~~~~D~~G~~qls~iete~lL~~ 398 (550)
T cd00765 319 PEVKELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLPKGVYLPLFIEAIQEQLMLERDPHGNVQVSRIETEKLLIQ 398 (550)
T ss_pred chHHHHHHHHHHHhhhcccchhhhhhhcccHHHHHhhhccccccccccchHHHHHHhhcccCCCCCEeeccchHHHHHHH
Confidence 99999999999999887766666688899999999987777 999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEecc
Q 008310 408 MVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGT 487 (570)
Q Consensus 408 lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~~v 487 (570)
||+++|++|+..|+|+++|+.++|+|||+|||+.||+||++|||+||+.|++++.+|.||||++|+|+..++++|+++++
T Consensus 399 lV~~~L~~~k~~g~y~~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~g~tGyM~~I~~l~~~~~~w~~~~v 478 (550)
T cd00765 399 MVETRLEKMKQAGAYKGQFMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLNSGKTGYISSVGNLAAPVEEWTVGGV 478 (550)
T ss_pred HHHHHHHHhhhcccccccccceeeecCcchhccCCcHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHhhhhhhhhcCCcccceeeceeccCChhhHHHHHhhccccccccccCCCcccccCCCC--CCCcceeeec
Q 008310 488 ALTSLMHVERRHGKFKPVIKKAMVELEGKPFKTFASLREDWTIKNLYASPGPIQFSGPTA--NDINHTLMLE 557 (570)
Q Consensus 488 Pl~~~~~~e~~~g~~~p~i~~~~V~l~~~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~--~~~~~tl~~e 557 (570)
||++|||+|++.|+.+|||+|++|||+|++|++|+++|++|+++|+||+||||||+||.+ |++|+||.||
T Consensus 479 Pl~~~mn~e~~~g~~~pvi~~~~v~l~g~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~~~tl~~e 550 (550)
T cd00765 479 PLTMLMNMERRHGKFKPVIKKALVDLEGAPFKKFASLREEWALKNRYIYPGPVQYTGPSEGSDELSHTLLLE 550 (550)
T ss_pred cHHHHhccccccCCcceecccceeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeccCccccccCCceeeecC
Confidence 999999999999999999999999999999999999999999999999999999999987 9999999997
No 4
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=1.4e-148 Score=1220.19 Aligned_cols=538 Identities=54% Similarity=0.928 Sum_probs=515.7
Q ss_pred CCCHhhhhhcCCCCCCcccccc---ccceecCCCCCCCCChhHHHhhCCcccCCCeeEEecCCccccccCCCCccEEEEE
Q 008310 20 IYTELQISRMNVSLPLPSVLKN---TFNVVDDAASSAAGDPEEIKKLFPKFYGQPSARLVECDPMACTLMENKSLKIGVV 96 (570)
Q Consensus 20 ~~s~l~~~r~~~~p~lp~~l~~---~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~IGIv 96 (570)
++|+||++|+.|+|+||++|++ .++++++++++++.++++|+++|||||++|+++|.++. .....++||||+
T Consensus 2 ~~s~~~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~-----~~~~~~~~IgIl 76 (555)
T PRK07085 2 NKSYLQLARLKYRPKLPKLLQNDPGLIKIVDGEFTESVADQDELAELFPNTYGLPYVTFVKGS-----ESSSKPLKVGVI 76 (555)
T ss_pred CcCHHHHHHHhCCCCCCHHHhCCCCCceEeecCCccccCCHHHHHHhChHhhCCccEEEEeCC-----CCcccceEEEEE
Confidence 5799999999999999999976 58899999999999999999999999999999999964 222347899999
Q ss_pred ecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChHHHHHH
Q 008310 97 LSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQA 176 (570)
Q Consensus 97 ~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~~~~~ 176 (570)
+||||||||||||+|+++++++.+++++||||++||.||+++++++||++.++.|+|+|||++|||+|+++.++++++++
T Consensus 77 ~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~i 156 (555)
T PRK07085 77 LSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIETEEQKEAC 156 (555)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChhhhcCCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 008310 177 EETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDA 256 (570)
Q Consensus 177 ~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ni~~Da 256 (570)
+++|++++||+||+||||||+++|+.|+|||++++++++||||||||||||+++.+|+|||||||+++++++|+||++||
T Consensus 157 ~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~~~~~I~~i~~Da 236 (555)
T PRK07085 157 LETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDA 236 (555)
T ss_pred HHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred hhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCc
Q 008310 257 RSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISEGLIDFI 336 (570)
Q Consensus 257 ~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl~~~i 336 (570)
.|+++||||||||||+||||||+||||||||+|||||++++++++|++|+++|++.|++|+..|++|||||||||+++||
T Consensus 237 ~s~~~~~~~VevMGR~aG~LAl~~aLat~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~i 316 (555)
T PRK07085 237 LSAKKYWHFIKLMGRSASHIALECALQTHPNICLISEEVAEKKMSLQDIVHYIASVIADRAAKGKNYGVILIPEGLIEFI 316 (555)
T ss_pred HhcCCcEEEEEECCCChHHHHHHHHHhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCccc-------C-CCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHH
Q 008310 337 PEVQQLIAELNEILAHGGVD-------R-DGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQM 408 (570)
Q Consensus 337 pe~~~li~el~~~~~~~~~d-------~-~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~l 408 (570)
|||+.||+|||+++++...+ + ...+.++|++|++++|++||.+||+||+.+||+|||+|+++|+||++|++|
T Consensus 317 pe~~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~l~~~lp~~i~~qLl~~rD~~Gn~~ls~i~te~lL~~l 396 (555)
T PRK07085 317 PEMKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIARQLLLDRDPHGNVQVSKIETEKLLIEM 396 (555)
T ss_pred chHHHHHHHHHHhhhhcccccccccchhhhhhhhhhcCHHHHHHHhhcchhhhhhhccCcCCCCCeeeccccHHHHHHHH
Confidence 99999999999998654211 1 122678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccc
Q 008310 409 VEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTA 488 (570)
Q Consensus 409 V~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~~vP 488 (570)
|+++|++|+.+|+|+++|++++|+|||+|||+.||+||++|||+||+.|++++++|+||||++|+|+..++++|++.++|
T Consensus 397 V~~~l~~~k~~g~y~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vP 476 (555)
T PRK07085 397 VKKELEKLKPEGKYKGPFSAISHFFGYEGRSAFPSNFDADYCYALGYTAALLILNGKTGYMSTIKNLTSPYTEWIAGAVP 476 (555)
T ss_pred HHHHHHHhhcccccccceeeeeecCChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhhhhcCCcccceeeceeccCChhhHHHHHhhccccccccccCCCcccccCCCC--CCCcceeeecccCCc
Q 008310 489 LTSLMHVERRHGKFKPVIKKAMVELEGKPFKTFASLREDWTIKNLYASPGPIQFSGPTA--NDINHTLMLELGQGQ 562 (570)
Q Consensus 489 l~~~~~~e~~~g~~~p~i~~~~V~l~~~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~--~~~~~tl~~e~~~~~ 562 (570)
|++|||+|+++|+.+|+|+|++|||+|++|++|+++|++|+++|+||+||||||+||.+ |++|+||.||+++-.
T Consensus 477 l~~~~n~e~~~g~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~~~tl~~e~~~~~ 552 (555)
T PRK07085 477 LTMMMNMERRHGKEKPVIKKALVDLDGPPFKYFAKYRDIWALEDSYRFPGPLQYFGPEELCDQRTLTLLLELNKNS 552 (555)
T ss_pred HHHHhcHHhhCCCCCceeeeeeeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeecCccccccCCCceEEecCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999977 999999999998643
No 5
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=1.4e-147 Score=1210.19 Aligned_cols=532 Identities=59% Similarity=0.998 Sum_probs=510.3
Q ss_pred hhhhhcCCCCCCcccccc---ccceecCCCCCCCCChhHHHhhCCcccCCCeeEEecCCccccccCCCCccEEEEEecCC
Q 008310 24 LQISRMNVSLPLPSVLKN---TFNVVDDAASSAAGDPEEIKKLFPKFYGQPSARLVECDPMACTLMENKSLKIGVVLSGG 100 (570)
Q Consensus 24 l~~~r~~~~p~lp~~l~~---~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~IGIv~sGG 100 (570)
||+.|+.|+|+||++|++ .+++..++++.+..++++|+++|||||++|+++|.++.. ..+...++||||++|||
T Consensus 1 ~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~---~~~~~~~~rIgIl~sGG 77 (539)
T TIGR02477 1 LQQSRLQYVPKLPKVLQGDTANISLEDGEPTAAVADQEELKELFPNTYGLPIITFEPGEA---SPDEHQPLKIGVILSGG 77 (539)
T ss_pred CchhHhhCCCCCChHHcCCCcceEEeccCcccCCCCHHHHHHhChHhhCCccEEEecCCC---CcccccceEEEEECCCC
Confidence 699999999999999987 588899999999999999999999999999999998642 22345668999999999
Q ss_pred CCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChHHHHHHHHHH
Q 008310 101 QAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETV 180 (570)
Q Consensus 101 ~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~~~~~~~~l 180 (570)
||||+||||+|++++++..+++++||||++||+||+++++++||++.++.|+|+|||++|||+|+++.+++++++++++|
T Consensus 78 ~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~~~~~l 157 (539)
T TIGR02477 78 QAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAKALTTA 157 (539)
T ss_pred CChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888999999999999999999999999999999999999889999999998999999999999
Q ss_pred HHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhcC
Q 008310 181 KKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSG 260 (570)
Q Consensus 181 ~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ni~~Da~S~~ 260 (570)
++++||+||+||||||+++|+.|+|||+++|++++||||||||||||+++.+|+|||||||+++++++|+||++|+.|++
T Consensus 158 ~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~~~~I~~i~~Da~s~~ 237 (539)
T TIGR02477 158 KKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSAK 237 (539)
T ss_pred HHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999987778899999999999999999999999999
Q ss_pred CeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHH
Q 008310 261 KYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISEGLIDFIPEVQ 340 (570)
Q Consensus 261 k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~ 340 (570)
+||||||||||+||||||+||||||||+|||||++++++++|++|+++|++.|++|+..||+|||||||||+++||||++
T Consensus 238 ~~~~~VevMGR~aG~LAl~~aLat~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ipe~~ 317 (539)
T TIGR02477 238 KYWHFIRLMGRSASHIALECALQTHPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKNFGVILIPEGLIEFIPEVQ 317 (539)
T ss_pred CcEEEEEECCCCcHHHHHHHHHhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCchhhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcccC--CCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHHHHHHHHhhc
Q 008310 341 QLIAELNEILAHGGVDR--DGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQMVEAELNKRKQ 418 (570)
Q Consensus 341 ~li~el~~~~~~~~~d~--~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV~~~L~~r~~ 418 (570)
.|++|+|++++++.... ...+.++|++|+++||.+||.+||+||+.+||+|||+|+++|+||++|++||+++|++|++
T Consensus 318 ~Li~el~~~l~~~~~~~~~~~~i~~~ls~~s~~l~~~lp~~i~~qLl~~~D~~G~~~ls~i~te~lL~~lV~~~l~~~~~ 397 (539)
T TIGR02477 318 ALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFIRHQLLLDRDPHGNVQVSQIETEKLLIELVQTELNKRKK 397 (539)
T ss_pred HHHHHHHhhhhcccccchhhhhhhhhcCHhHHHHHhhcchhHHHhhccCcCCCCCeeeccccHHHHHHHHHHHHHHhhhc
Confidence 99999999997664331 1236689999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccchHhhhhhhhh
Q 008310 419 KGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTALTSLMHVERR 498 (570)
Q Consensus 419 ~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~~vPl~~~~~~e~~ 498 (570)
+|+|+++|..++|+|||+|||+.||+||++|||+||+.|++++++|+||||++|+|++.++++|++.++||++|||+|++
T Consensus 398 ~~~~k~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl~~~~n~e~~ 477 (539)
T TIGR02477 398 EGEYKGKFSAVSHFFGYEGRCAFPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIAGGVPLTMMMNMERR 477 (539)
T ss_pred cccceeEEeecccccCcccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccHHHHhChhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccceeeceeccCChhhHHHHHhhccccccccccCCCcccccCCCC--CCCcceeeecc
Q 008310 499 HGKFKPVIKKAMVELEGKPFKTFASLREDWTIKNLYASPGPIQFSGPTA--NDINHTLMLEL 558 (570)
Q Consensus 499 ~g~~~p~i~~~~V~l~~~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~--~~~~~tl~~e~ 558 (570)
+|+.+|+|+|++|||+|++|++|+++|++|+++|+||+||||||+||.+ |++++||.||+
T Consensus 478 ~g~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pgpiQ~~g~~~~~~~~~~tl~~e~ 539 (539)
T TIGR02477 478 HGEMKPVIKKALVDLEGKPFKKFASNRDKWALEDLYVFPGPIQYFGPEEVCDQPTLTLLLEQ 539 (539)
T ss_pred CCCCCccceeeeeCCCCHHHHHHHHHHHHHhhcCcccCCCCeeecCccccccCCceEEEecC
Confidence 9999999999999999999999999999999999999999999999995 99999999995
No 6
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=5e-143 Score=1232.84 Aligned_cols=550 Identities=45% Similarity=0.769 Sum_probs=521.9
Q ss_pred CCC-ccceeccccccCccccCC---------CHhhhhhcCCCCCCccccccccceecCCCCCCCCCh--hHHHhhCCccc
Q 008310 1 MSN-KSSIVKRDEAAGRVASIY---------TELQISRMNVSLPLPSVLKNTFNVVDDAASSAAGDP--EEIKKLFPKFY 68 (570)
Q Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~---------s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~--~~i~~~fp~~~ 68 (570)
|+| |++++||.|++.||.+++ |+||++|+.|+|+||++|++.++++++++++++.++ ++|+++|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~s~~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~i~~~fp~t~ 80 (1328)
T PTZ00468 1 MSNYKQTELKRNKGDSRDVSLLSASSLHEGQSNMQMWRRRWEPCLPHILRSPLSIKEVSAFEGMGKMERSDVSSYFPLTS 80 (1328)
T ss_pred CCccchhhhhhccCccccccccchhhhhcCcCHHHHHHHhcCCCCChHhcCceEEeecCCcccccCcchHHHHHhCcccc
Confidence 899 999999999999998875 899999999999999999999999999999988777 99999999999
Q ss_pred CCCeeEEecCCccccccCCCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhh
Q 008310 69 GQPSARLVECDPMACTLMENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFI 148 (570)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v 148 (570)
++|+++|+++............+|||||+||||||||||||+|++++++..+++++||||++||.||+++++++|+++.+
T Consensus 81 ~~p~~~~~~~~~~~~~~~~~~~krIGILtSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~~~ieLt~~~V 160 (1328)
T PTZ00468 81 GNSLVKFEAISDGSSSWKKFPARRIGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDI 160 (1328)
T ss_pred CCcceEEeecCCCccccccccCCEEEEECcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCCCeEeCCHHHH
Confidence 99999999853100111222348999999999999999999999999988889999999999999999999999999999
Q ss_pred ccccccCCceecccCCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCC
Q 008310 149 YPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 228 (570)
Q Consensus 149 ~~~~n~GG~~~lGs~R~k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 228 (570)
+.|+|+|||++|||+|.++.+++++++++++|++++||+||+||||||+++|+.|+|||.+.|++++||||||||||||+
T Consensus 161 ~~i~n~GGt~iLGS~R~kl~~ee~~~~~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~ 240 (1328)
T PTZ00468 161 NGILNQGGFNIICSGRHKIETEEQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLK 240 (1328)
T ss_pred HHHHhCCCcccccCcCCCCCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHH
Q 008310 229 CKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDY 308 (570)
Q Consensus 229 ~~~ie~s~GFdTA~k~~se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~ 308 (570)
++.+|+|||||||+++++++|+|++.||.|+++||||||||||+||||||+|||||+||+|||||++++++++|++|++.
T Consensus 241 g~~tD~S~GFdTA~k~iae~I~nl~~~A~S~~~rv~~VEVMGR~AGhLAL~~ALAtganiiLIPEe~~~k~~tL~dIvd~ 320 (1328)
T PTZ00468 241 NEVIETSFGYDTAVKTYSEQIGSIMDAIKTEGYGYYFVRLMGRSASHITLECGLQTRANMILIGEEIKEENRSLMSIVDE 320 (1328)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCcchHHHHHHHHHhcCCCEEEecCcCccchhhhhHHHHH
Confidence 98888899999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCc-hhhhcchhhHHHhhhchHHHHHHhhhc
Q 008310 309 ITDIICKRSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGV-WKKKLKSQSQELFELFPEEIQKQLLLE 387 (570)
Q Consensus 309 i~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~-~~~~ls~~~~~lf~~lp~~i~~ql~~~ 387 (570)
|++.|.+|++.|++|||||||||+++||||++.||+|||++++++ +++. +.++||+|++++|++||++|++||+.+
T Consensus 321 Iv~~I~kR~~~Gk~ygIIvVsEGliefIpe~~~Li~eln~~l~~~---~~g~~i~~~Ls~~~~~lf~~lP~~i~~qLl~~ 397 (1328)
T PTZ00468 321 IVEMILKRDSLGKKHGIVLLPEGLIEFIPEFETLIKELNLILLKT---NDRKQIIDSLSQEMKTLFLELPSDVQNQLLLE 397 (1328)
T ss_pred HHHHHHHHHHcCCCcEEEEEcCCccccccHHHHHHHHHHHhhccc---cchhhhhhhcCHHHHHHHHhCcHHHHHHhccc
Confidence 999999999999999999999999999999999999999999764 3444 667999999999999999999999999
Q ss_pred CCCCCCcccchhhhHHHHHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCc
Q 008310 388 RDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTG 467 (570)
Q Consensus 388 rD~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG 467 (570)
||+|||+||++|+||++|++||+++|++|+.+ |. +|.+++|+|||+|||+.||+||++|||+||+.|++++.+|+||
T Consensus 398 rD~hGnvqls~I~tEklLa~lV~~~L~~~~~~--~~-~f~~k~HflGYE~RCa~PS~FD~~yayaLG~~Av~l~~~G~TG 474 (1328)
T PTZ00468 398 RDPHGNVQVAKIATEELLVHMAKEKLEEVKKD--YI-LDNVKTHYFGYEGRCALPSNFDASYCFALGHTAAALIDNQRSG 474 (1328)
T ss_pred cCCCCCEeeccccHHHHHHHHHHHHHHHhhcc--cc-cCCceEeecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999775 55 7899999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCccceEEeccchHhhhhhhhhcCCcccceeeceeccCChhhHHHHHhhccccccccccCCCcccccCCCC
Q 008310 468 LIASVGNLGEPVEEWTVGGTALTSLMHVERRHGKFKPVIKKAMVELEGKPFKTFASLREDWTIKNLYASPGPIQFSGPTA 547 (570)
Q Consensus 468 ~m~~i~~l~~~~~~w~~~~vPl~~~~~~e~~~g~~~p~i~~~~V~l~~~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~ 547 (570)
||++|+|+..++++|+++++||++|||+|+|+|+.+|||+|++|||+|++|++|+++|++|+++|+||+||||||+||.+
T Consensus 475 yMatI~nl~~~~~~W~~~~vPL~~mmn~E~r~g~~~pvI~k~~V~l~g~~f~~~~~~r~~w~~~d~Y~~pGPiQ~~gp~~ 554 (1328)
T PTZ00468 475 YMAVVRKLSLTPEQWEPAGCPLTYMMNIELRKGKSVPVIKKYLVDLKGQSYLAYCQVRSEWKLNDYYRNPGPIQFDGPNS 554 (1328)
T ss_pred eEEEEEeCCCCceEEEEccccHHHHhhHHhhCCCccceeeecccCCCcHHHHHHHHHHHHhhhcCcccCCCCeeeccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeee
Q 008310 548 NDINHTLML 556 (570)
Q Consensus 548 ~~~~~tl~~ 556 (570)
+.+++++..
T Consensus 555 ~~~~~~~~~ 563 (1328)
T PTZ00468 555 GITNYMISP 563 (1328)
T ss_pred cCcceeccC
Confidence 988887653
No 7
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.2e-137 Score=1195.55 Aligned_cols=549 Identities=35% Similarity=0.583 Sum_probs=498.1
Q ss_pred ccccCCCHhhhhhcCCCCCCccccccc-cceecCCC--CCCCCChhHHHhhCCcccCCCeeEEecCCccccccCCCCccE
Q 008310 16 RVASIYTELQISRMNVSLPLPSVLKNT-FNVVDDAA--SSAAGDPEEIKKLFPKFYGQPSARLVECDPMACTLMENKSLK 92 (570)
Q Consensus 16 ~~~~~~s~l~~~r~~~~p~lp~~l~~~-~~~~~~~~--~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (570)
+..+++|++|..|..++|++|.++... ..++.... +.....++++...|||+.....+.+............+..+|
T Consensus 759 ~~~~~~s~~~~~r~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r 838 (1419)
T PTZ00287 759 KSLGCMSELQTSRLYNKLELPELCSDLKAKVRAGKQYISNDPYTQKQILSNYPHMSYENKFQIQEIFHDKYATPISFEIK 838 (1419)
T ss_pred hhhccccHHhhhccccCccchhhhhhhHhhcccceeeecCChhhhhhhhhcccchhhhhhhhHhhhhccccccCCcCCcE
Confidence 567789999999999999999988432 23332211 112345789999999988865554432221111234456689
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCC-CCCChH
Q 008310 93 IGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRD-KIETPE 171 (570)
Q Consensus 93 IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~-k~~~~e 171 (570)
||||+||||||||||||+|++++++..+ +. ++||. ||.||+++++++||.++++.|+|+|||+++||+|. ++.++|
T Consensus 839 IGVLtSGGdAPG~NnVIrgvv~~a~~~~-g~-~~gf~-G~~GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~f~t~e 915 (1419)
T PTZ00287 839 IGIVFLSRQAPGAMNVLCGLYRRLKLLK-GV-CIAFY-GLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHSLFDKE 915 (1419)
T ss_pred EEEECcCCCcHhHHHHHHHHHHHHHHhC-Ce-EEEEe-CchhhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCCCCCHH
Confidence 9999999999999999999999986553 44 57766 99999999999999999999999999977799994 678999
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHHH
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGN 251 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~n 251 (570)
++++++++|++++||+|||||||||+++|+.|+|||+++|++++||||||||||||++..+|+|||||||+++++++|+|
T Consensus 916 ~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~seaI~n 995 (1419)
T PTZ00287 916 NRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYASLIGN 995 (1419)
T ss_pred HHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997777899999999999999999
Q ss_pred HHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Q 008310 252 VMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISEG 331 (570)
Q Consensus 252 i~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EG 331 (570)
|++||.|++|||||||||||+||||||+||||||||+|||||++..+++||++|++.|++.|++|++.||+|||||||||
T Consensus 996 L~~dA~S~~ry~~fVEVMGR~aGhLALe~aLatgAniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~~GK~ygIVlV~EG 1075 (1419)
T PTZ00287 996 VLTDAVSMPKYWHFIRLMGRSPSHEVLECALQTHPNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYGTVLIPDA 1075 (1419)
T ss_pred HHHHHHhcCCcEEEEEECCCchHHHHHHHHHhcCCCEEEecCcccccccchhHHHHHHHHHHHHHHHcCCCcEEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHhcCcc--------------------------------cC---CCchhhhcchhhHHHhhhc
Q 008310 332 LIDFIPEVQQLIAELNEILAHGGV--------------------------------DR---DGVWKKKLKSQSQELFELF 376 (570)
Q Consensus 332 l~~~ipe~~~li~el~~~~~~~~~--------------------------------d~---~g~~~~~ls~~~~~lf~~l 376 (570)
|++|||||+.||+|||+++++... +. ...+.++||||+++||++|
T Consensus 1076 Lie~Ipe~k~Li~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lsp~s~~lf~sl 1155 (1419)
T PTZ00287 1076 LLMHLPHMKILLSEISDILNDANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPLSASPWVSKLTPWSLALLKTF 1155 (1419)
T ss_pred HHHhCHHHHHHHHHHHHHHHhhhhcccccccccchhhccccccccccccccccccccccchhhHHHhhCCHHHHHHHHhc
Confidence 999999999999999999864100 00 1237789999999999999
Q ss_pred hHHHHHHhhhcCCCCCCcccchhhhHHHHHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHH
Q 008310 377 PEEIQKQLLLERDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFA 456 (570)
Q Consensus 377 p~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~ 456 (570)
|.+||+||+ +||+ ||+|||+||||+||++||+++|++|+++|+|+|+|++++||||||+||+.||+|||+|||+||+.
T Consensus 1156 P~~i~~qLl-~rD~-gn~~vs~IeTE~LL~~mV~~eL~~rk~~g~y~g~F~~~~HffGYegR~~~PS~FD~~y~Y~LG~~ 1233 (1419)
T PTZ00287 1156 PQFIIKELL-HVDL-RSMRFEKLETEQLLLQMVKEELHQRKQKGKYSGSFMGLTHFFGYQGRSSLPSEFDCKLAYSYGHA 1233 (1419)
T ss_pred cHHHHHHHh-ccCC-CCcccccchHHHHHHHHHHHHHHHHHhcCccccccceeeeccccccccCCCCccchHHHHHHHHH
Confidence 999999998 9999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCceEEEEecCCCCccceEEeccchHhhhhhhhhc----------CCcccceeeceeccCChhhHHHHHhhc
Q 008310 457 SGALLHAGKTGLIASVGNLGEPVEEWTVGGTALTSLMHVERRH----------GKFKPVIKKAMVELEGKPFKTFASLRE 526 (570)
Q Consensus 457 A~~li~~g~tG~m~~i~~l~~~~~~w~~~~vPl~~~~~~e~~~----------g~~~p~i~~~~V~l~~~~f~~~~~~r~ 526 (570)
|+.++.+|+||||++|+|++.|+++|.++++||++||++|+|+ |+.+|||+|++|||+|+||+.|+++|+
T Consensus 1234 A~~li~~g~tGym~~i~nl~~~~~~W~~~giPlt~mm~ve~r~~~~k~~~~~~g~~~pvI~k~~Vdl~g~~fk~~~~~r~ 1313 (1419)
T PTZ00287 1234 ASIVIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMKILPRGQGSKYLKSASKGDLPVIPSAPVDLNGKAYRSLKIALQ 1313 (1419)
T ss_pred HHHHHhCCCeEEEEEecCccCCHHHeEEccchhhhhhchhhhccccccccccccCccccccccccCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 889999999999999999999999999
Q ss_pred cccccccccCCCcccccCCCCCCCcceeeeccc----CCchhHhhhc
Q 008310 527 DWTIKNLYASPGPIQFSGPTANDINHTLMLELG----QGQPAQAKLN 569 (570)
Q Consensus 527 ~w~~~d~y~~pGpiq~~g~~~~~~~~tl~~e~~----~~~~~~~~~~ 569 (570)
+|+++|+|++||||||+||.+|++++||.+|++ .++.++.|++
T Consensus 1314 ~W~~~d~y~~PGPiQ~~g~~~~~~~~tL~~e~~~y~~~l~~~~~~~~ 1360 (1419)
T PTZ00287 1314 KWQMEDRFCNPGPIQFEGNASNYYNRILFEEQSEYFEMLRYVECYAN 1360 (1419)
T ss_pred hhhhcCcCCCCCCccccCccccCcCeeeeHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999977 6778888775
No 8
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.8e-136 Score=1185.75 Aligned_cols=548 Identities=42% Similarity=0.739 Sum_probs=517.3
Q ss_pred CccceeccccccCcccc---CCCHhhhhhcCCCCCCccccccccc---eecCCCCCCCCChhHHHhhCCcccCCCeeEEe
Q 008310 3 NKSSIVKRDEAAGRVAS---IYTELQISRMNVSLPLPSVLKNTFN---VVDDAASSAAGDPEEIKKLFPKFYGQPSARLV 76 (570)
Q Consensus 3 ~~~~~~~~~~~~~~~~~---~~s~l~~~r~~~~p~lp~~l~~~~~---~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~ 76 (570)
|+..++||.++|.+..+ +.|+||++|+.|+|+||++|++.++ +.+++++.+..+.+++.++||++++.|.++|.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~s~~q~~r~~~~p~lp~~l~~~~~~~~~~~g~~~~~~~d~~~~~~f~~~~~~~~~~~~~ 164 (1419)
T PTZ00287 85 NENMKIKKLKEHGHSASLNDDLSPLQYERIKYQPTLPKALASEYQILEENHGDDFINKKDYEEVKRFLKNLHNLPILNVK 164 (1419)
T ss_pred cccchhhhhhhcccchhhhcccCHHHHHHHhcCCCCchhhccccccceeccCcccccccCHHHHHHHHHHhhcCceeeec
Confidence 67889999999888766 6799999999999999999998888 78899999999999999999999999999998
Q ss_pred cCCccccccCCCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCC
Q 008310 77 ECDPMACTLMENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGG 156 (570)
Q Consensus 77 ~~~~~~~~~~~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG 156 (570)
+... .+..+...++||||++||||||||||||+|++++++..+++++||||++||.||+++++++||+++++.|+|+||
T Consensus 165 ~~~~-~~~~~~~~~~rIgIl~SGGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~~~veLt~~~V~~~~n~GG 243 (1419)
T PTZ00287 165 ETNN-HESFKGGNVLKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGG 243 (1419)
T ss_pred CCCc-cccccccCceEEEEEccCCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHHhhHHhCCC
Confidence 6431 110122345899999999999999999999999998778899999999999999999999999999999999999
Q ss_pred ceecccCCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCC
Q 008310 157 FDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISF 236 (570)
Q Consensus 157 ~~~lGs~R~k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~ 236 (570)
|++|||||.++.+++++++++++|++++||+|||||||||+++|+.|+||+.+.|++++||||||||||||+++.+|+||
T Consensus 244 s~iLGSgR~k~~~~e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~ 323 (1419)
T PTZ00287 244 FNMLWSGRGKVRNKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISF 323 (1419)
T ss_pred hhHhhCCCCCCCCHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCC
Confidence 98999999999889999999999999999999999999999999999999999999999999999999999987777899
Q ss_pred ChhhHHHHHHHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHH
Q 008310 237 GFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKR 316 (570)
Q Consensus 237 GFdTA~k~~se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R 316 (570)
|||||+++++++|+|++.|+.|++++|||||||||+|||||++||||++||+|||||+++.++++|++|+++|++.|.+|
T Consensus 324 GFDTA~n~iae~I~ni~~D~~Ss~~~~~VVEVMGR~AG~LAl~~aLAtgAdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR 403 (1419)
T PTZ00287 324 GFDTATKTYSEVIGNLCTDVKTGHNVYHVVRVMGRSASHVVLECALQTRPNIVLIGEEVEKENLSLKDIVSNIVNTILKR 403 (1419)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEECCCcchHHHHHHHHhcCCCEEEecCcccccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCccc
Q 008310 317 SEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQV 396 (570)
Q Consensus 317 ~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~l 396 (570)
++.|++|||||||||+++||||++.||+|||++++++.. ...+++ |++++|.+||..|++||+++||+|||+||
T Consensus 404 ~~~gk~~gVIvVsEGlie~Ipe~~~Li~eln~~l~~g~~-----~~~~~~-~~~~~f~~LP~~i~~qLl~~rD~~Ghvql 477 (1419)
T PTZ00287 404 RSLNKNYGVILIPEGLIEFVPEMKILIGELNVILKEGPF-----DASKLK-HSREVWDFLPSIIRDQLLMDRESTGYIQV 477 (1419)
T ss_pred HHcCCCcEEEEEeCCcchhcchHHHHHHHhhhhcccCcc-----hhhhhh-hhhhhhhhccHHHHhhhhcccCCCCCEec
Confidence 999999999999999999999999999999999976532 123455 89999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCC
Q 008310 397 AKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLG 476 (570)
Q Consensus 397 s~i~te~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~ 476 (570)
++|+||++|++||+++|+++++++ .+|.+++|+|||+|||+.||+||++|||+||+.|+.++.+|.||||++|+|+.
T Consensus 478 s~i~te~lL~~~V~~~L~~~~~~g---~~~k~~~h~lGYe~RcA~PS~fD~~yay~LG~~Av~l~~~G~tG~Mv~I~nl~ 554 (1419)
T PTZ00287 478 GKIATERLIIVLVESELAKLNDNN---LNIQFMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLE 554 (1419)
T ss_pred cccchHHHHHHHHHHHHHHHHhcC---CCeeEEEeecCcchhccCCcHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 999999999999999999998776 37899999999999999999999999999999999999999999999999999
Q ss_pred CCccceEEeccchHhhhhhhhhc-CCcccceeeceeccCChhhHHHHHhhccccccccccCCCcccccCCCCCCCcceee
Q 008310 477 EPVEEWTVGGTALTSLMHVERRH-GKFKPVIKKAMVELEGKPFKTFASLREDWTIKNLYASPGPIQFSGPTANDINHTLM 555 (570)
Q Consensus 477 ~~~~~w~~~~vPl~~~~~~e~~~-g~~~p~i~~~~V~l~~~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~~~~~~tl~ 555 (570)
.++++|+++++||++||++|+|+ |+.+|||+|++|||+|++|++|+++|++|+++|+||+||||||+||.+|++++||.
T Consensus 555 ~~~~~w~~~~vPl~~~m~~e~~~~g~~~pvi~k~~v~l~g~~f~~~~~~r~~w~~~d~Y~~pGpiQ~~g~~~d~~~~tl~ 634 (1419)
T PTZ00287 555 DSYANWIPAAIPFLRIMHVNRDNTGKEFPAVKRYLVDLNSPLFNVLKEVRSLWSLYDLYRSPGPIQFNGHLSNSRCYTVK 634 (1419)
T ss_pred CCcceeEEcccCHHHHhhHHhhccCCCceeEEeeeeCCCCHHHHHHHHHHHHhhhcccccCCCCeeccccccCCCceeee
Confidence 99999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred ecccC
Q 008310 556 LELGQ 560 (570)
Q Consensus 556 ~e~~~ 560 (570)
+|...
T Consensus 635 ~e~~~ 639 (1419)
T PTZ00287 635 IPTKD 639 (1419)
T ss_pred ccchh
Confidence 99753
No 9
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=8.2e-125 Score=1082.13 Aligned_cols=544 Identities=24% Similarity=0.382 Sum_probs=476.6
Q ss_pred ccccCCCHhhhhhcCCCCCCccccccc-cceecCCCCC-C--CCChhHHHhhCCcccCC---CeeEEecCC--------c
Q 008310 16 RVASIYTELQISRMNVSLPLPSVLKNT-FNVVDDAASS-A--AGDPEEIKKLFPKFYGQ---PSARLVECD--------P 80 (570)
Q Consensus 16 ~~~~~~s~l~~~r~~~~p~lp~~l~~~-~~~~~~~~~~-~--~~~~~~i~~~fp~~~~~---~~~~~~~~~--------~ 80 (570)
+...++|+||..|.+|+|++|.+|... .+....-..+ + .....+|.+.||+...+ ..+++.... .
T Consensus 581 ~~~~~~s~l~~~r~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 660 (1328)
T PTZ00468 581 THKLCGSELSQNRCKDDLKIPKILLSTASKFNDDLIISSSCRDLDAYIITKCLPHQTGRHNSKTLQLREEEYSSPFTEIR 660 (1328)
T ss_pred hcccccchhhhhhhcCCCCCchhhhhhhcccchhhcccCchHHHHHHHHHhhCcHhhhcccCcceEEEeccccCchhhcc
Confidence 456899999999999999999999654 2221111111 1 24456888899998776 434444332 0
Q ss_pred cc--ccc---CCCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEE--ECC----hhhhc
Q 008310 81 MA--CTL---MENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFV--ELS----SEFIY 149 (570)
Q Consensus 81 ~~--~~~---~~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~--eLt----~~~v~ 149 (570)
.. ... .....++||||+.||||||+||||+|++.++. +.+ |+||++|+.||++++.. .|| .++++
T Consensus 661 ~~~~~~~~~~~~~~~~~vgIv~~g~~aPG~NnVI~g~~~~~~--~~g--vig~~~G~~~L~~~~~~~v~l~~~~~~~~~~ 736 (1328)
T PTZ00468 661 ESSSSKSSVGNSLACESLGLILSCLSTPGTQNVICGLVNGLP--SLK--QLIVFKSLSDFYEGKALKVDLTSEGSLEFFE 736 (1328)
T ss_pred ccccCcccccccccceeEEEEecCCCCccHHHHHHHHHHHHH--hCC--cEEEEechhHHhcCCceEEecccchhHHHHH
Confidence 00 000 11134899999999999999999999999875 333 99999999999999754 454 36899
Q ss_pred cccccCCceecccC----------CCCCCC-----hH---------------HHHHHHHHHHHcCCCEEEEecCchhHHH
Q 008310 150 PYRNQGGFDMLCSG----------RDKIET-----PE---------------QFKQAEETVKKLDLDGLVVIGGDDSNTN 199 (570)
Q Consensus 150 ~~~n~GG~~~lGs~----------R~k~~~-----~e---------------~~~~~~~~l~k~~Id~LviIGGddS~t~ 199 (570)
.++|+||+ +++++ |+.+.+ ++ +.+.+.++|++++||+||+||||||+++
T Consensus 737 ~~~n~GG~-~~~~~~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~ 815 (1328)
T PTZ00468 737 NSLNSGGC-IFPNGVEIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATF 815 (1328)
T ss_pred HHHhcCCe-eeeccccccccccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHH
Confidence 99999998 66777 644422 23 4688999999999999999999999999
Q ss_pred HHHHHHHHhcCC-----CCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhcCCeeEEEEecCCCCc
Q 008310 200 ACLLAENFRSKD-----MKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAAS 274 (570)
Q Consensus 200 A~~Lae~~~~~g-----~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ni~~Da~S~~k~~~fIevMGR~ag 274 (570)
|+.|+|+|.+++ ++++||||||||||||+++++|+|||||||+++++++|+|+++|++|+++||||||||||+||
T Consensus 816 A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~ag 895 (1328)
T PTZ00468 816 GASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTS 895 (1328)
T ss_pred HHHHHHHHhhhccccccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcChH
Confidence 999999998765 579999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCcEEEECCchhhh----------hcchHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCch---HHHH
Q 008310 275 HITLECALQTHPNIAIIGEEIAAK----------KLTLKNVTDYITDIICKRSEAGYNFGVVLISEGLIDFIP---EVQQ 341 (570)
Q Consensus 275 ~lAle~aLat~pnivlIpEe~~~~----------~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl~~~ip---e~~~ 341 (570)
||||+||||||||+|||||++.++ +++|++|+++||+.|++|++.||+|||||||||++++|| |++.
T Consensus 896 ~LAL~~gLatganivlIpEe~~~~~~~~~~~~~~~~tL~~ii~~I~~~I~~R~~~Gk~ygvIlIsEGlie~ip~~~e~~~ 975 (1328)
T PTZ00468 896 NVALEVGIQTHPNLVVIPERYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQVYPTREYRK 975 (1328)
T ss_pred HHHHHHHHhhCCCEEEecCcccccccccccccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEcCChHHhCCCHHHHHH
Confidence 999999999999999999998644 689999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhcCcccC------CCchhhhcchhhHHH---hhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHHHHH
Q 008310 342 LIAELNEILAHGGVDR------DGVWKKKLKSQSQEL---FELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQMVEAE 412 (570)
Q Consensus 342 li~el~~~~~~~~~d~------~g~~~~~ls~~~~~l---f~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV~~~ 412 (570)
||.| +++++..+. ...+.++||+|++++ |.+||.+|++||+++|| ||+|||+||||++|++||++|
T Consensus 976 li~e---~~a~~~~~~~~~~~~~~~~~~~Ls~~~~~~~~~f~~lp~~i~~qL~~~~d--gn~~vs~IeTE~lL~~lV~~e 1050 (1328)
T PTZ00468 976 IFSR---FSTQNLCNASNSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLI--NSRKICDVRTEIILSALVQKE 1050 (1328)
T ss_pred HHHH---HhhhccccccchhhhhhhhhccCCHHHHHHHHHHHhhhHHHHHHHHhccC--CCcchhhhhHHHHHHHHHHHH
Confidence 9998 444433322 123667999999999 99999999999999998 999999999999999999999
Q ss_pred HHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC-CceEEEEecCCCCccceEEeccchHh
Q 008310 413 LNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGK-TGLIASVGNLGEPVEEWTVGGTALTS 491 (570)
Q Consensus 413 L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~-tG~m~~i~~l~~~~~~w~~~~vPl~~ 491 (570)
|++|+++|+|+++|++++||||||+||+.||+|||+|||+||+.|+.++.+|. ||||++|+|++.|+++|.++++||++
T Consensus 1051 l~~rk~~g~y~g~f~~~~HffGYegR~~~Ps~FD~~y~y~lG~~A~~li~~g~~~Gym~~i~nl~~~~~~W~~~~iPlt~ 1130 (1328)
T PTZ00468 1051 LKFRRSKNKIKNGMNPVCFSFTDQVRACIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISS 1130 (1328)
T ss_pred HHHHHhcCccccccceeeccccccccCCCCCcCchHHHHHHHHHHHHHHHCCCCceEEEEecCccCCHHHheeCccchHH
Confidence 99999999999999999999999999999999999999999999999999999 69999999999999999999999999
Q ss_pred hhhhhhhcC-------------Ccccceee----------------ceec-cCChhhHHHHHhhccccccccccCCCccc
Q 008310 492 LMHVERRHG-------------KFKPVIKK----------------AMVE-LEGKPFKTFASLREDWTIKNLYASPGPIQ 541 (570)
Q Consensus 492 ~~~~e~~~g-------------~~~p~i~~----------------~~V~-l~~~~f~~~~~~r~~w~~~d~y~~pGpiq 541 (570)
||++|+|+| +.||||+| ++|| |+|+||+.|+++|++|+++|+|++|||||
T Consensus 1131 mm~~~~~~~~~~~~~~~~~~~~~~k~vi~~~~~~~~~~~~~~~~~~~~Vd~l~g~~f~~~~~~r~~w~~~d~y~~PGPiQ 1210 (1328)
T PTZ00468 1131 LMTLNIEGDKIMDSRNNSNLSFESKKLLTESTLGNAGHQLEFICKLNSVNMRNNPSFKLLMNHIEKWEVDNTYANPGPIQ 1210 (1328)
T ss_pred hhCcccccCcccccccccccccccccceeccccccccccccccccccccccccCHHHHHHHHHHHhhhhccccCCCCCcc
Confidence 999999999 78999999 8999 79999999999999999999999999999
Q ss_pred ccCCCCCCCcceeeecccC----CchhHhhhc
Q 008310 542 FSGPTANDINHTLMLELGQ----GQPAQAKLN 569 (570)
Q Consensus 542 ~~g~~~~~~~~tl~~e~~~----~~~~~~~~~ 569 (570)
|+||.+|++++||.+|++. .|+++.|++
T Consensus 1211 ~~gp~~~~~~~tL~~e~~~~~~~l~~~~~~~~ 1242 (1328)
T PTZ00468 1211 YFNLFKNLFNRTLFESEYVYTRNLKEMDQILL 1242 (1328)
T ss_pred ccCccccCCCeeeeehhhHHHHHHHHHHHHHH
Confidence 9999999999999999886 677776654
No 10
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=6e-84 Score=677.33 Aligned_cols=336 Identities=40% Similarity=0.575 Sum_probs=309.9
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC-CC
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI-ET 169 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~-~~ 169 (570)
+||||++|||||||+||+|+|+++++.. .+++||||++||+||+++++++|+++.++.|+++||+ +|||+|+++ .+
T Consensus 1 ~ri~Il~sGG~apG~N~~i~~~v~~~~~--~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs-~LgtsR~~~~~~ 77 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA--EGLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGT-IIGSARCKEFRT 77 (338)
T ss_pred CeEEEEccCCCchhHHHHHHHHHHHHHH--CCCEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCe-ecccCCCCccCC
Confidence 5999999999999999999999999765 4689999999999999999999999999999999998 999999986 67
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHH
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVI 249 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I 249 (570)
++++++++++|++++||+||+||||||+++|+.|+|+|++++.+++|||||||||||++++|+ |||||||+++++++|
T Consensus 78 ~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~--s~Gf~TA~~~~~~~i 155 (338)
T cd00363 78 EEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDY--TIGFDTALKTIVEAI 155 (338)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCccc--CcCHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999997775 999999999999999
Q ss_pred HHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 008310 250 GNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLIS 329 (570)
Q Consensus 250 ~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~ 329 (570)
++++.||.|+ ++|||||+|||+|||||++||||++||+|||||+++. .+..+.+++.|++|+++|++|++||||
T Consensus 156 ~~l~~~a~s~-~rv~ivEvMGR~~G~Lal~~ala~~ad~iliPE~~~~-----~~~~~~~~~~i~~r~~~~~~~~vivvs 229 (338)
T cd00363 156 DRIRDTASSH-QRTFVVEVMGRHCGDIALEAGLATGADIIFIPEEPAA-----DEWEEEMVDVIKKRRERGKRHGIVIVA 229 (338)
T ss_pred HHHHHhcccC-CCEEEEEECCcCHHHHHHHHHHHhCCCEEEeCCCCCC-----CCCHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 9999999995 6799999999999999999999999999999999974 345788999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHH
Q 008310 330 EGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQMV 409 (570)
Q Consensus 330 EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV 409 (570)
||+.+.+|. ..++.+|+++|
T Consensus 230 EG~~~~~~~------------------------------------------------------------~~~~~~l~~~i 249 (338)
T cd00363 230 EGAIDFIPK------------------------------------------------------------PITEKLLAKLV 249 (338)
T ss_pred CCCcccccc------------------------------------------------------------CchHHHHHHHH
Confidence 999754221 12355677777
Q ss_pred HHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccch
Q 008310 410 EAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTAL 489 (570)
Q Consensus 410 ~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~~vPl 489 (570)
++++ .|+++.++|||+|||+.||+||+.||++||..|++++.+|.||+|++++|++ +|++..+||
T Consensus 250 ~~~~-----------~~~~r~~~lGy~qRg~~ps~~D~~~a~~lG~~Av~~~~~g~tg~mv~~~~~~----~~~~~~vpl 314 (338)
T cd00363 250 EERL-----------GFDTRATVLGHVQRGGTPTAFDRILASRLGAEAVELLLEGTGGTPVGIQNLN----ENQVVRHPL 314 (338)
T ss_pred HHHc-----------CCceEEeecCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCCcEEEEECCc----cCEEEEecH
Confidence 7765 3678899999999999999999999999999999999999999999999975 899999999
Q ss_pred HhhhhhhhhcCCcccceeeceeccCChhhHHHH
Q 008310 490 TSLMHVERRHGKFKPVIKKAMVELEGKPFKTFA 522 (570)
Q Consensus 490 ~~~~~~e~~~g~~~p~i~~~~V~l~~~~f~~~~ 522 (570)
.++++.+++.+ ||++|++|+.|.
T Consensus 315 ~~~~~~~~~~~----------~~~~~~~~~~~~ 337 (338)
T cd00363 315 TEAVNMTKRVG----------VDLEGRPFKKFA 337 (338)
T ss_pred HHHHhhhcccc----------cCCChHHHHHhh
Confidence 99999998776 899999999874
No 11
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-81 Score=651.58 Aligned_cols=342 Identities=34% Similarity=0.457 Sum_probs=297.7
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCC-CC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDK-IE 168 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k-~~ 168 (570)
++||||+|||||||||||||+|+++++... +++||||++||.||+++++++|++++++.|+|+||| +|||+|.+ ++
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~--g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT-~lgssR~~~~~ 78 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKE--GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGT-FLGSARFPEFK 78 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHc--CCEEEEEecchhhhcCCcceeccccchhHHHhcCCe-EEeeCCCCCcc
Confidence 589999999999999999999999997654 999999999999999999999999999999999998 88999975 88
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEV 248 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~ 248 (570)
++|..+++++++++++||+||+||||||+++|+.|+|++ +++|||||||||||+..++. |||||||+++++++
T Consensus 79 ~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td~--tiGfdTA~~~~~ea 151 (347)
T COG0205 79 TEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTDF--TIGFDTALETAVEA 151 (347)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCccccc--CccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999985 38899999999999997775 99999999999999
Q ss_pred HHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEE
Q 008310 249 IGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLI 328 (570)
Q Consensus 249 I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli 328 (570)
|+++. |++|++++|||||||||+||||||+||||++||+|+|||++++. .+.+.++.+..+|...||+|++|++
T Consensus 152 id~l~-dtassh~r~~iveVMGR~aG~lAl~aglA~~a~~ilipE~~~~~-----~i~~~~~~i~~~~~~~gk~~~iIvv 225 (347)
T COG0205 152 IDNLR-DTASSHERIFIVEVMGRHAGWLALAAGLATGADIILIPEEPADL-----IIEELIAEIKAKREARGKKHAIIVV 225 (347)
T ss_pred HHHHH-HHHhCcCCEEEEEecCcChhHHHHHHHHhcCCCEEEecCccccc-----hHHHHHHHHHHHHHHhCCCceEEEE
Confidence 99997 77777788999999999999999999999999999999999854 2333344444446669999999999
Q ss_pred eCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHH
Q 008310 329 SEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQM 408 (570)
Q Consensus 329 ~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~l 408 (570)
+||+.+++|+ +|+.. ...
T Consensus 226 aEG~~~~~~~----------------------------------------------------~~~~~----------~~~ 243 (347)
T COG0205 226 AEGAIDQIGE----------------------------------------------------NGAEL----------LAA 243 (347)
T ss_pred cccccccccc----------------------------------------------------chhhH----------HHH
Confidence 9999987554 01111 111
Q ss_pred HHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccc
Q 008310 409 VEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTA 488 (570)
Q Consensus 409 V~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~~vP 488 (570)
+++.+... .+++|.++|||+||||.||+||+.||+.||..|++++.+|++|+|++++|++.....|.....|
T Consensus 244 i~~~~~~~--------~~~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~~l~~g~~~~~v~i~~~~~v~~~~~~~~~~ 315 (347)
T COG0205 244 IEELLALG--------DFETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLLLEGKTGYMVGIRNNKIVHVPIDEAVAP 315 (347)
T ss_pred HHHHhhhc--------ccceEEEeccccccCCCCchHHHHHHHHHHHHHHHHHHcCCCCceEEEeCCeeEeehhHhhhhh
Confidence 22222211 1788999999999999999999999999999999999999999999999999888888888888
Q ss_pred hHhhhhhhhhcCCcccceeeceeccCChhhHHH
Q 008310 489 LTSLMHVERRHGKFKPVIKKAMVELEGKPFKTF 521 (570)
Q Consensus 489 l~~~~~~e~~~g~~~p~i~~~~V~l~~~~f~~~ 521 (570)
...+++.++ .++.+++.+|++...++..+
T Consensus 316 ~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~ 344 (347)
T COG0205 316 LKMVMSLEE----PDRSIKLDLVDLAKRLGIYF 344 (347)
T ss_pred hhhhhcccc----cCcchhhHHHhhhhhhhhhh
Confidence 888877665 44667889999988888765
No 12
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=3.8e-80 Score=663.16 Aligned_cols=342 Identities=24% Similarity=0.338 Sum_probs=302.4
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhcc---ccccCCceecccCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYP---YRNQGGFDMLCSGRDK 166 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~---~~n~GG~~~lGs~R~k 166 (570)
++||||++|||||||||++|+|+++++....+.++||||++||+||+++++++|+...++. +.++||+ +|||||++
T Consensus 3 ~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt-~LgssR~~ 81 (416)
T PRK14072 3 KGNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSG-ALGSCRYK 81 (416)
T ss_pred CceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCe-EeccCCCC
Confidence 4799999999999999999999999976554459999999999999999999999866665 8999998 99999998
Q ss_pred C----CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHH
Q 008310 167 I----ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTAC 242 (570)
Q Consensus 167 ~----~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~ 242 (570)
+ .+++++++++++|++++||+||+||||||+++|+.|+|++++.|++++||||||||||||.++|+ |||||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~--t~GF~TA~ 159 (416)
T PRK14072 82 LKSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDH--CPGFGSAA 159 (416)
T ss_pred CcccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCC--CCChHHHH
Confidence 6 37889999999999999999999999999999999999999999999999999999999999886 99999999
Q ss_pred HHHHHHHHHHHHHhhhcCC--eeEEEEecCCCCcHHHHHhhhh-----cCCcEEEECCchhhhhcchHHHHHHHHHHHHH
Q 008310 243 KTFSEVIGNVMTDARSSGK--YYHFIRLMGRAASHITLECALQ-----THPNIAIIGEEIAAKKLTLKNVTDYITDIICK 315 (570)
Q Consensus 243 k~~se~I~ni~~Da~S~~k--~~~fIevMGR~ag~lAle~aLa-----t~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~ 315 (570)
++++++|++|+.|++|+.+ +|||||||||+||||||+|||| ++||+|||||.+++ + +.+++.|++
T Consensus 160 ~~i~~ai~~l~~D~~~ta~s~Rv~iVEvMGR~aG~LAl~a~lA~~~~~~gad~iliPE~~~~----~----~~~~~~i~~ 231 (416)
T PRK14072 160 KYIATSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQNPDDAPHLIYLPERPFD----E----EKFLADVRA 231 (416)
T ss_pred HHHHHHHHHHHHHHHhcccCceEEEEEEeCcchhHHHHHHhhccccCCCCccEEEccCCCCC----H----HHHHHHHHH
Confidence 9999999999999988654 6999999999999999999999 99999999999874 3 445555666
Q ss_pred HHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcc
Q 008310 316 RSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQ 395 (570)
Q Consensus 316 R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ 395 (570)
+++. ++|+|||||||+.+. ++..+. +. ...+|+|||++
T Consensus 232 ~~~~-~~~~ivvVaEG~~~~----------------------~g~~i~------------------e~-~~~~D~~gh~~ 269 (416)
T PRK14072 232 IVKR-YGYCVVVVSEGIRDA----------------------DGKFIA------------------EA-GLAEDAFGHAQ 269 (416)
T ss_pred HHHh-CCCeEEEEecCcccc----------------------cccchh------------------cc-ccccCCCCCcc
Confidence 6655 999999999998531 121111 00 12359999999
Q ss_pred cchhhhHHHHHHHHHHHHHHhhccCccccccccccccCcccccCCC--CCHHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Q 008310 396 VAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGF--PTNFDANYCYALGFASGALLHAGKTGLIASVG 473 (570)
Q Consensus 396 ls~i~te~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~--PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~ 473 (570)
++++ +++|+++|++++. +++|++++||+||||. ||+||+.||++||..|++++.+|.+|+|++++
T Consensus 270 l~g~--~~~La~~i~~~~g-----------~~~R~~~LG~~QRgg~~~ps~~Dr~~a~~lG~~AV~~~~~G~~g~mv~l~ 336 (416)
T PRK14072 270 LGGV--APVLANLIKEKLG-----------KKVHWAVLDYLQRAARHIASKTDVEEAYAVGKAAVEYALAGKNGVMPAIR 336 (416)
T ss_pred cccH--HHHHHHHHHHHhC-----------CeEEEEeCChhhhCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCceEEEE
Confidence 9985 6788888877763 5678999999999998 99999999999999999999999999999999
Q ss_pred cCCCCccceEEeccchHhhhhhhh
Q 008310 474 NLGEPVEEWTVGGTALTSLMHVER 497 (570)
Q Consensus 474 ~l~~~~~~w~~~~vPl~~~~~~e~ 497 (570)
+...++|+|++..+||.++++.++
T Consensus 337 ~~~~~~y~~~~~~vpl~~v~~~~k 360 (416)
T PRK14072 337 RTSDDPYKWKIGLVPLSKVANKEK 360 (416)
T ss_pred cCCCCcceeEEEcccHHHHHhhcC
Confidence 999899999999999999998444
No 13
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=1.1e-76 Score=618.26 Aligned_cols=320 Identities=28% Similarity=0.407 Sum_probs=282.1
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEEC-ChhhhccccccCCceecccCCCCCC--
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVEL-SSEFIYPYRNQGGFDMLCSGRDKIE-- 168 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eL-t~~~v~~~~n~GG~~~lGs~R~k~~-- 168 (570)
|||||+|||||||||++|+|+++++.. +++++||||++||+||+++++++| ++++++.|+++||+ +|||+|.++.
T Consensus 1 ~IgIltsGG~apGmN~~i~~~v~~a~~-~~g~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt-~LgtsR~~~~~~ 78 (324)
T TIGR02483 1 RIGVLTGGGDCPGLNAVIRGVVRRAIA-EYGWEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGT-ILGSSRTNPFKY 78 (324)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHH-cCCceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCc-cccCCCCCcccc
Confidence 699999999999999999999998543 457899999999999999999999 99999999999997 9999999864
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEV 248 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~ 248 (570)
+++++++++++|++++||+||+||||||+++|+.|+|. .++|||||||||||++++|+ |||||||+++++++
T Consensus 79 ~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~~------gi~vigiPkTIDNDl~gtd~--tiGfdTA~~~~~~~ 150 (324)
T TIGR02483 79 EEDGDDKIVANLKELGLDALIAIGGDGTLGIARRLADK------GLPVVGVPKTIDNDLEATDY--TFGFDTAVEIATEA 150 (324)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHhc------CCCEEeeccccCCCCcCCcc--CcCHHHHHHHHHHH
Confidence 35889999999999999999999999999999999973 38999999999999998875 99999999999999
Q ss_pred HHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEE
Q 008310 249 IGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLI 328 (570)
Q Consensus 249 I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli 328 (570)
|++++.||.|++| |||||+|||+|||||++||||++||+|||||+++ ++ +++++.|++|+++|++|++|||
T Consensus 151 i~~i~~ta~S~~r-~~ivEvMGR~~G~LAl~~ala~~a~~iliPE~~~----~~----~~l~~~v~~~~~~g~~~~vvvv 221 (324)
T TIGR02483 151 LDRLHTTAESHHR-VMVVEVMGRHAGWIALHSGIAGGADVILIPEIPF----DI----DSVCEKVRERFARGKRFAIVVV 221 (324)
T ss_pred HHHHHHHHhhcCC-EEEEEEcCCChhHHHHHHHhccCCCEEEecCCCC----CH----HHHHHHHHHHHHhCCCceEEEE
Confidence 9999999999865 7999999999999999999999999999999985 33 5667788899999999999999
Q ss_pred eCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHH
Q 008310 329 SEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQM 408 (570)
Q Consensus 329 ~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~l 408 (570)
+||+.+... ... + . ...+|+|||++++++ .++|++.
T Consensus 222 sEG~~~~~~----------------------~~~----------~-------~---~~~~d~~gh~~~~~~--~~~l~~~ 257 (324)
T TIGR02483 222 AEGAKPKGG----------------------EMV----------V-------Q---EGVKDAFGHVRLGGI--GNWLAEE 257 (324)
T ss_pred ecCcccccc----------------------chh----------c-------c---ccccccccCcccCcH--HHHHHHH
Confidence 999864211 100 0 0 014799999999885 4566666
Q ss_pred HHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccc
Q 008310 409 VEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTA 488 (570)
Q Consensus 409 V~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~~vP 488 (570)
+++++ .+++|...+||.||||.||+||+.+|++||..|++++.+|.+|+|+++++.+ +..+|
T Consensus 258 i~~~~-----------g~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~mv~~~~~~-------~~~~p 319 (324)
T TIGR02483 258 IERRT-----------GIETRATVLGHLQRGGSPSAFDRVLATRFGVAAVDLVHEGQFGHMVALRGTD-------IVYVP 319 (324)
T ss_pred HHHhc-----------CCcceECCcChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCE-------EEEee
Confidence 65543 2577889999999999999999999999999999999999999999999874 77888
Q ss_pred hHhh
Q 008310 489 LTSL 492 (570)
Q Consensus 489 l~~~ 492 (570)
|.++
T Consensus 320 ~~~~ 323 (324)
T TIGR02483 320 IAEA 323 (324)
T ss_pred HHHh
Confidence 8765
No 14
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=5.2e-76 Score=612.08 Aligned_cols=301 Identities=30% Similarity=0.432 Sum_probs=272.5
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCC-CC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDK-IE 168 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k-~~ 168 (570)
++||||++|||||||||++|+|+++++.. .+++||||++||+||+++++++|++++++.|.++||+ +|||+|++ +.
T Consensus 1 mk~i~Il~sGG~apG~Na~i~~~~~~~~~--~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs-~LgtsR~~~~~ 77 (320)
T PRK03202 1 MKRIGVLTSGGDAPGMNAAIRAVVRTAIS--EGLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGT-ILGSARFPEFK 77 (320)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHHH--CCCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCc-ccccCCCCCcC
Confidence 37999999999999999999999999654 4789999999999999999999999999999999998 99999986 56
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEV 248 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~ 248 (570)
+++++++++++|++++||+||+||||||+++|+.|+|+ +++|||||||||||++++++ |||||||+++++++
T Consensus 78 ~~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~------~i~vigiPkTIDNDl~gtd~--s~Gf~TA~~~~~~~ 149 (320)
T PRK03202 78 DEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------GIPVIGLPGTIDNDIAGTDY--TIGFDTALNTAVEA 149 (320)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhc------CCcEEEecccccCCCCCCcc--CcCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999985 68999999999999998875 99999999999999
Q ss_pred HHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEE
Q 008310 249 IGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLI 328 (570)
Q Consensus 249 I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli 328 (570)
|+++..||.|++ +|||||+|||+|||||++||||++||+|||||+++ + .+++++.|++|++.|++|++|||
T Consensus 150 i~~l~~~a~s~~-rv~iVEvMGR~~G~LAl~~ala~~a~~iliPE~~~----~----~~~l~~~i~~r~~~g~~~~vivv 220 (320)
T PRK03202 150 IDRLRDTASSHE-RVFIVEVMGRHAGDLALHAGIAGGAEVILIPEVPF----D----IEELCAKIKKGRERGKKHAIIVV 220 (320)
T ss_pred HHHHHHHHhccC-CEEEEEECCCChHHHHHHHHHhcCCCEEEeCCCCC----C----HHHHHHHHHHHHHhcCCcEEEEE
Confidence 999999988874 68999999999999999999999999999999975 3 35677788999999999999999
Q ss_pred eCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHH
Q 008310 329 SEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQM 408 (570)
Q Consensus 329 ~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~l 408 (570)
|||+.+. ..|++.
T Consensus 221 sEg~~~~-------------------------------------------------------------------~~l~~~ 233 (320)
T PRK03202 221 AEGVMPA-------------------------------------------------------------------EELAKE 233 (320)
T ss_pred eCCCCCH-------------------------------------------------------------------HHHHHH
Confidence 9998530 013334
Q ss_pred HHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccc
Q 008310 409 VEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTA 488 (570)
Q Consensus 409 V~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~~vP 488 (570)
+++++ ++++|+..+||.||||.||+||+.+|++||..|++++.+|.+|+|+++++. ++..+|
T Consensus 234 i~~~~-----------~~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~~v~~~~~-------~~~~vp 295 (320)
T PRK03202 234 IEERT-----------GLETRVTVLGHIQRGGSPTAFDRVLASRMGAHAVELLLEGKGGRMVGIQNN-------KIVHVP 295 (320)
T ss_pred HHHHh-----------CCceEEcccchhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECC-------EEEEEe
Confidence 44443 367788999999999999999999999999999999999999999999987 478999
Q ss_pred hHhhh-hh
Q 008310 489 LTSLM-HV 495 (570)
Q Consensus 489 l~~~~-~~ 495 (570)
|.+++ +.
T Consensus 296 l~~v~~~~ 303 (320)
T PRK03202 296 IEEAVENM 303 (320)
T ss_pred HHHHHhcC
Confidence 99998 54
No 15
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=1.6e-75 Score=624.22 Aligned_cols=346 Identities=23% Similarity=0.281 Sum_probs=300.9
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCC-EEEEEeCCcccccCCC--EEECChhhhccccccCCceecccCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGS-KLYGFRGGPAGIMKCK--FVELSSEFIYPYRNQGGFDMLCSGRDK 166 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~-~v~Gf~~G~~GLl~~~--~~eLt~~~v~~~~n~GG~~~lGs~R~k 166 (570)
.+|||||+|||||||||+||+++++.+. ..+. +||||++||+||++++ .++|+++.++.+.++||+ +|||+|.+
T Consensus 53 ~~rIaIltsGGdaPGmNa~Iravv~~a~--~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt-~LGtsR~~ 129 (411)
T PLN02884 53 EVKAAIVTCGGLCPGLNDVIRQIVFTLE--IYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGS-LLGVSRGG 129 (411)
T ss_pred ceEEEEEcCCCCCccHhHHHHHHHHHHH--HcCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCc-eeccCCCC
Confidence 3899999999999999999999999864 3466 8999999999999999 677889999999999997 99999998
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHH
Q 008310 167 IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFS 246 (570)
Q Consensus 167 ~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~s 246 (570)
+ .+++++++|++++||+||+||||||+++|..|++++++.|++++||||||||||||.++|+ |||||||+++++
T Consensus 130 ~----~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~--TiGFdTAv~~~~ 203 (411)
T PLN02884 130 A----KTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDK--TFGFDTAVEEAQ 203 (411)
T ss_pred c----cHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCccc--CCCHHHHHHHHH
Confidence 7 4889999999999999999999999999999999999999999999999999999999886 999999999999
Q ss_pred HHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcC-CcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEE
Q 008310 247 EVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTH-PNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGV 325 (570)
Q Consensus 247 e~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~-pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gv 325 (570)
++|+++..||.|+.++|+|||||||+|||||+++|||++ ||+|||||.+++.. -.+.+++.|++|++ +++|+|
T Consensus 204 ~ai~~l~~tA~s~~~rv~iVEvMGR~aG~LAl~aalA~g~ad~ilIPE~~f~~~-----~~~~~~~~i~~~~~-~k~~~i 277 (411)
T PLN02884 204 RAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLASGQVDICLIPEVPFTLD-----GPNGVLRHLEHLIE-TKGSAV 277 (411)
T ss_pred HHHHHHHHhhhccCCcEEEEEeCCCCHHHHHHHHHHhcCCCCEEEeCCCCCCcc-----cHHHHHHHHHHHHh-cCCcEE
Confidence 999999999988666799999999999999999999998 99999999987421 12455666777776 899999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHH
Q 008310 326 VLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERML 405 (570)
Q Consensus 326 Ili~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL 405 (570)
|+|+||+...+.+ . ...+|++||++++++ .+.|
T Consensus 278 IVVAEG~g~~~~~------------------~---------------------------~~~~Da~G~~~l~~~--~~~L 310 (411)
T PLN02884 278 VCVAEGAGQDLLQ------------------K---------------------------TNATDASGNPVLGDI--GVHL 310 (411)
T ss_pred EEEeccccccccc------------------c---------------------------cccccccCCcccCcH--HHHH
Confidence 9999998432111 0 013799999999986 5568
Q ss_pred HHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEe
Q 008310 406 IQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVG 485 (570)
Q Consensus 406 ~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~ 485 (570)
++.|++++++.. ..+++++..+||+||||.|+.+|+.||+.||..|++++.+|.||+|+++++. ++.
T Consensus 311 a~~i~~~~~~~g------~~~~~r~~~lGy~qRgg~p~a~Dr~la~~lG~~AV~~~~~G~sg~mV~l~~~-------~~~ 377 (411)
T PLN02884 311 QQEIKKHFKDIG------VPADVKYIDPTYMIRACRANASDAILCTVLGQNAVHGAFAGFSGITVGICNT-------HYV 377 (411)
T ss_pred HHHHHHHhhccC------CCceEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECC-------EEE
Confidence 888777765431 2468889999999999999999999999999999999999999999999995 578
Q ss_pred ccchHhhhhhhhhcCCcccceeeceeccCChhhHHHH
Q 008310 486 GTALTSLMHVERRHGKFKPVIKKAMVELEGKPFKTFA 522 (570)
Q Consensus 486 ~vPl~~~~~~e~~~g~~~p~i~~~~V~l~~~~f~~~~ 522 (570)
.+||.++++. +..||.+|..|+.+-
T Consensus 378 ~vpl~~v~~~------------~k~vd~~~~~~~~~~ 402 (411)
T PLN02884 378 YLPIPEVIAY------------PRRVDPNSRMWHRCL 402 (411)
T ss_pred EEeHHHHhcC------------CCCCCCCcHHHHHHH
Confidence 9999999853 235677888777654
No 16
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=2.1e-75 Score=630.13 Aligned_cols=349 Identities=26% Similarity=0.343 Sum_probs=304.0
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
...|||||+|||+|||+|+||++++.++...+...+||||++||+||+++++++||++.++.|+++||+ +|||||.++
T Consensus 86 ~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGT-iLGTSR~~~- 163 (459)
T PTZ00286 86 KEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGT-ILGSSRGGF- 163 (459)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCCc-eeccCCChh-
Confidence 448999999999999999999999999875556689999999999999999999999999999999997 999999873
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEV 248 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~ 248 (570)
++++++++|++++||+||+||||||+++|..|+|++.++|++|+||||||||||||+.+| .|||||||+++++++
T Consensus 164 ---~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td--~S~GFdTAv~~~~~a 238 (459)
T PTZ00286 164 ---DPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIID--ESFGFQTAVEEAQNA 238 (459)
T ss_pred ---hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcc--cCcCchHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999877 599999999999999
Q ss_pred HHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcC-CcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEE
Q 008310 249 IGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTH-PNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVL 327 (570)
Q Consensus 249 I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~-pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIl 327 (570)
|++++.||.|++++|+|||+|||+|||||+++|||++ ||+|||||.++ +|+ .+++.|++|++ +++|+|||
T Consensus 239 I~~~~~eA~S~~~~v~iVEvMGR~sG~LAl~aaLA~~~ad~vlIPE~~f----~l~----~ll~~l~~r~~-~~~~~VIV 309 (459)
T PTZ00286 239 IRAAYVEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIPEFDI----PLE----GVLEYIEQRLQ-KKGHCVIV 309 (459)
T ss_pred HHHHHHHHHHhcCcEEEEEecCcchhHHHHHHhhhhcCCCEEEeCCCCC----CHH----HHHHHHHHHHh-cCCcEEEE
Confidence 9999999999988899999999999999999999996 99999999986 454 45566677775 48899999
Q ss_pred EeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHH
Q 008310 328 ISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQ 407 (570)
Q Consensus 328 i~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~ 407 (570)
|+||+.+.+.+ +. +...+|++||+++.++ ..+|++
T Consensus 310 VaEGa~~~~~~--------------------~~-----------------------~~~~~D~~Gn~~l~di--g~~L~~ 344 (459)
T PTZ00286 310 VAEGAGQSLKD--------------------AD-----------------------LDLGTDASGNKKLWDI--GVYLKD 344 (459)
T ss_pred EecCCcccccc--------------------cc-----------------------ccccccccCCcccccH--HHHHHH
Confidence 99998642111 00 0124799999999876 688999
Q ss_pred HHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEecc
Q 008310 408 MVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGT 487 (570)
Q Consensus 408 lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~~v 487 (570)
.+++++++++ ..++.+...+||+|||+.||+||+.||+.||..|++++++|.||+|+++++. ++..+
T Consensus 345 ~I~~~~~~~~------~~~~~r~~~~gy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~-------~~~~v 411 (459)
T PTZ00286 345 EITKYLKKKK------PEHTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFIIGHVHN-------NYVMI 411 (459)
T ss_pred HHHHHHhhcc------CceEEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-------EEEEE
Confidence 9988886653 3567788999999999999999999999999999999999999999999986 47889
Q ss_pred chHhhhhhhhhcCCcccceeeceeccCChhhHHHH
Q 008310 488 ALTSLMHVERRHGKFKPVIKKAMVELEGKPFKTFA 522 (570)
Q Consensus 488 Pl~~~~~~e~~~g~~~p~i~~~~V~l~~~~f~~~~ 522 (570)
||..+. +. .+..|+.++..|..+.
T Consensus 412 Pl~~v~------~~-----~~~~v~~~~~~w~~~~ 435 (459)
T PTZ00286 412 PIKEMS------GN-----YRRRVNPEGRLWQRML 435 (459)
T ss_pred eHHHHh------CC-----CccccCcchHHHHHHH
Confidence 998871 11 1344556666555443
No 17
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=2.3e-75 Score=629.06 Aligned_cols=356 Identities=23% Similarity=0.310 Sum_probs=308.0
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
+...|||||||||+|||||+||++++..+...+...+||||++||+||+++++++||++.++.|.++||+ +|||+|.+.
T Consensus 85 p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGT-iLGTsR~~~ 163 (484)
T PLN02564 85 SDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGT-ILGTSRGGH 163 (484)
T ss_pred CcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCCc-eeccCCCcc
Confidence 3458999999999999999999999998765555579999999999999999999999999999999997 999999864
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHH
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSE 247 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se 247 (570)
++++++++|++++||+||+||||||+++|+.|++++++.|++++||||||||||||.++|. |||||||++++++
T Consensus 164 ----~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~--T~GFdTAv~~~~~ 237 (484)
T PLN02564 164 ----DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDK--SFGFDTAVEEAQR 237 (484)
T ss_pred ----hHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCccc--CCCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999998775 9999999999999
Q ss_pred HHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhc-CCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEE
Q 008310 248 VIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQT-HPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVV 326 (570)
Q Consensus 248 ~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat-~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvI 326 (570)
+|++++.||.|++++|+|||||||+|||||+++|||+ +||+|||||.++ +|++ ...+++.|++|++. ++|+||
T Consensus 238 aI~~i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf----~le~-~~~ll~~i~~rl~~-~~~~VI 311 (484)
T PLN02564 238 AINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPF----YLEG-KGGLFEFIEKRLKE-NGHMVI 311 (484)
T ss_pred HHHHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCC----Ccch-HHHHHHHHHHHHhc-cCCEEE
Confidence 9999999999998889999999999999999999999 699999999987 4443 22455667888877 789999
Q ss_pred EEeCCCCC-CchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHH
Q 008310 327 LISEGLID-FIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERML 405 (570)
Q Consensus 327 li~EGl~~-~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL 405 (570)
||+||+.. .+++ + .+. ...+|++||+++.++ ..+|
T Consensus 312 VVAEGagq~~~~~------~----------------------------------~~~--~~~~Da~Gn~~l~di--g~~L 347 (484)
T PLN02564 312 VVAEGAGQDLIAE------S----------------------------------MES--SDLQDASGNKLLLDV--GLWL 347 (484)
T ss_pred EEeCCCccchhhh------h----------------------------------hcc--cccccccCCcccCcH--HHHH
Confidence 99999842 1111 0 000 124799999999987 6788
Q ss_pred HHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEe
Q 008310 406 IQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVG 485 (570)
Q Consensus 406 ~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~ 485 (570)
++.|++++.+++. ..++.+...+||.|||+.|+++|+.||+.||..|++++++|.||+|+++.|.+ +.
T Consensus 348 a~~I~~~~~~~~~-----~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG~~AV~~~~aG~tg~mVg~~~~~-------~~ 415 (484)
T PLN02564 348 SQKIKDHFTKVKK-----MPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGFTVGPVNGR-------HA 415 (484)
T ss_pred HHHHHHHhhhccc-----CCceEEEecCCchhcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------EE
Confidence 9988888844332 24678889999999999999999999999999999999999999999999874 78
Q ss_pred ccchHhhhhhhhhcCCcccceeeceeccCChhhHHHHHh
Q 008310 486 GTALTSLMHVERRHGKFKPVIKKAMVELEGKPFKTFASL 524 (570)
Q Consensus 486 ~vPl~~~~~~e~~~g~~~p~i~~~~V~l~~~~f~~~~~~ 524 (570)
.+||.+++.. +..|++++..|......
T Consensus 416 ~vPi~~~~~~------------~~~v~~~~~~w~~~l~~ 442 (484)
T PLN02564 416 YIPFYRITEK------------QNKVVITDRMWARLLSS 442 (484)
T ss_pred EEEHHHHhcc------------CCccCCChHHHHHHHHH
Confidence 9999988752 33457777777655443
No 18
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=5.7e-75 Score=599.38 Aligned_cols=299 Identities=31% Similarity=0.439 Sum_probs=266.0
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCC-CCCh
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDK-IETP 170 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k-~~~~ 170 (570)
||||++|||||||||++|+|+++++.. .+.+||||++||+||+++++++|+++.++.|+++||+ +|||+|.+ +.++
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~~--~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~LgtsR~~~~~~~ 77 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIY--HGFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGT-ILGTARCPEFKTE 77 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCc-eeccCCCCccCCH
Confidence 699999999999999999999998654 4789999999999999999999999999999999998 99999986 6678
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHH
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIG 250 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ 250 (570)
+++++++++|++++||+||+||||||+++|+.|+|++ +++|||||||||||++++|+ |||||||+++++++|+
T Consensus 78 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~-----~i~vigiPkTIDNDl~~td~--s~GfdTA~~~~~~~i~ 150 (301)
T TIGR02482 78 EGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEG-----GIPVIGLPGTIDNDIPGTDY--TIGFDTALNTIIDAVD 150 (301)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhh-----CCCEEeecccccCCCcCccc--CcChhHHHHHHHHHHH
Confidence 8999999999999999999999999999999999974 68999999999999998875 9999999999999999
Q ss_pred HHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Q 008310 251 NVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISE 330 (570)
Q Consensus 251 ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~E 330 (570)
++..+|.|++ +|||||+|||+|||||++||||++||+|||||+++ ++ +.+++.|++|+++|++|++|||+|
T Consensus 151 ~i~~ta~s~~-rv~ivEvMGR~~G~lAl~~~la~gad~iliPE~~~----~~----~~l~~~i~~r~~~g~~~~iIvvaE 221 (301)
T TIGR02482 151 KIRDTATSHE-RAFVIEVMGRHAGDLALYSGIATGAEIIIIPEFDY----DI----DELIQRLKEQHEAGKKHSIIIVAE 221 (301)
T ss_pred HHHHHhhcCC-CEEEEEeCCCCHHHHHHHHHHHcCCCEEEECCCCC----CH----HHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9977787765 59999999999999999999999999999999986 43 456677899999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHHH
Q 008310 331 GLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQMVE 410 (570)
Q Consensus 331 Gl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV~ 410 (570)
|+... . ...|+++++
T Consensus 222 G~~~~--~---------------------------------------------------------------~~~l~~~l~ 236 (301)
T TIGR02482 222 GNIVG--S---------------------------------------------------------------AKEVAKKIE 236 (301)
T ss_pred CCcCC--c---------------------------------------------------------------HHHHHHHHH
Confidence 95310 0 011233333
Q ss_pred HHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccchH
Q 008310 411 AELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTALT 490 (570)
Q Consensus 411 ~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~~vPl~ 490 (570)
++ ..+++|...+||.||||.||+||+.+|++||..|++++.+|.+|+|+++++.+ +..+||.
T Consensus 237 ~~-----------~g~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~mv~~~~~~-------~~~~p~~ 298 (301)
T TIGR02482 237 EA-----------TGIETRVTVLGHTQRGGSPTAFDRVLASRLGAKAVELLLEGKGGVMIGIQNNK-------IVTHPIE 298 (301)
T ss_pred Hh-----------cCCeeEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCE-------EEEeeHH
Confidence 22 24678889999999999999999999999999999999999999999999874 7788887
Q ss_pred hh
Q 008310 491 SL 492 (570)
Q Consensus 491 ~~ 492 (570)
++
T Consensus 299 ~~ 300 (301)
T TIGR02482 299 EA 300 (301)
T ss_pred Hh
Confidence 65
No 19
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=1.9e-74 Score=609.21 Aligned_cols=339 Identities=26% Similarity=0.376 Sum_probs=293.0
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCC--CEEECChhhhccccccCCceecccCCC-
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKC--KFVELSSEFIYPYRNQGGFDMLCSGRD- 165 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~lGs~R~- 165 (570)
+++||||++|||||||||++|+|+++++.. +++.+||||++||.||+++ ++++|++++++.|.++||+ +|||||.
T Consensus 3 ~~~~I~IltsGG~apGmNa~i~~vv~~a~~-~~g~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt-~LgtsR~~ 80 (360)
T PRK14071 3 EKKRIGILTSGGDCAGLNAVIRAVVHRARG-TYGWEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGT-ILGTTNKG 80 (360)
T ss_pred CCCEEEEECCCCCchhHHHHHHHHHHHHHh-cCCCEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCc-eeccCCCC
Confidence 468999999999999999999999998643 3478999999999999999 9999999999999999998 9999972
Q ss_pred C-CC-------ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCC
Q 008310 166 K-IE-------TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFG 237 (570)
Q Consensus 166 k-~~-------~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~G 237 (570)
. +. .++.+++++++|++++||+||+||||||++.|..|++. .+++||||||||||||+++|+ |||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~-----~~i~vIgiPkTIDNDl~~td~--t~G 153 (360)
T PRK14071 81 DPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ-----GGINLVGIPKTIDNDVGATEV--SIG 153 (360)
T ss_pred CccccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh-----cCCcEEEecccccCCCcCccc--CcC
Confidence 2 11 25678999999999999999999999999999999873 268899999999999999885 999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHH
Q 008310 238 FDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRS 317 (570)
Q Consensus 238 FdTA~k~~se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~ 317 (570)
||||++++++.|+++..+|.|++ +|||||||||+|||||+++|||++||+|||||.++ ++ +.+++.|++|+
T Consensus 154 f~TA~~~~~~~id~i~~ta~s~~-rv~ivEvMGR~~G~LAl~~~la~ga~~iliPE~~~----~~----~~l~~~i~~~~ 224 (360)
T PRK14071 154 FDTAVNIATEALDRLHFTAASHN-RVMILEVMGRDAGHIALAAGIAGGADVILIPEIPY----TL----ENVCKKIRERQ 224 (360)
T ss_pred hhHHHHHHHHHHHHHHhhhcccC-CEEEEEECCCCccHHHHHhHhhcCCCEEEECCCCC----CH----HHHHHHHHHHH
Confidence 99999999999999999999875 57999999999999999999999999999999875 44 44566778999
Q ss_pred HcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccc
Q 008310 318 EAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVA 397 (570)
Q Consensus 318 ~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls 397 (570)
+.+++|+||||+||+.+. ++.. ..++|++||+++.
T Consensus 225 ~~~~~~~iivvsEG~~~~----------------------~g~~-----------------------~~~~d~~g~~~~~ 259 (360)
T PRK14071 225 EEGKNFCLVVVSEAVRTE----------------------EGEQ-----------------------VTKTQALGEDRYG 259 (360)
T ss_pred HcCCCeEEEEEcCCCccc----------------------cccc-----------------------ccccccccccccC
Confidence 999999999999998531 1211 1237999999998
Q ss_pred hhhhHHHHHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCC
Q 008310 398 KIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGE 477 (570)
Q Consensus 398 ~i~te~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~ 477 (570)
++ .++|++++++++ ++++|...+||.|||+.||+||+.+|++||..|++++.+|+||+|+++++.
T Consensus 260 ~~--~~~l~~~i~~~~-----------g~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~G~t~~mv~~~~~-- 324 (360)
T PRK14071 260 GI--GQYLAEQIAERT-----------GAETRVTVLGHIQRGGIPSPRDRLLASAFGVAAVDLIAQGKFDRMVAWQNR-- 324 (360)
T ss_pred cH--HHHHHHHHHHhc-----------CCCeeEEecChhhcCCCCChHHHHHHHHHHHHHHHHHHcCCCCEEEEEECC--
Confidence 85 566777666553 366778899999999999999999999999999999999999999999986
Q ss_pred CccceEEeccchHhhhhhhhhcCCcccceeeceeccCChhhHHHH
Q 008310 478 PVEEWTVGGTALTSLMHVERRHGKFKPVIKKAMVELEGKPFKTFA 522 (570)
Q Consensus 478 ~~~~w~~~~vPl~~~~~~e~~~g~~~p~i~~~~V~l~~~~f~~~~ 522 (570)
++..+||.++++. +..||.++..|+...
T Consensus 325 -----~~~~vpl~~v~~~------------~~~v~~~~~~~~~~~ 352 (360)
T PRK14071 325 -----QVVSVPIAEAIAT------------YRAVDPEGTLVKTAR 352 (360)
T ss_pred -----EEEEEeHHHHhcC------------CCCCCccHHHHHHHH
Confidence 4889999999873 234566676666543
No 20
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=3.2e-74 Score=617.95 Aligned_cols=350 Identities=26% Similarity=0.344 Sum_probs=304.3
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccC---CCEEECChhhhccccccCCceecccCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMK---CKFVELSSEFIYPYRNQGGFDMLCSGRD 165 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~---~~~~eLt~~~v~~~~n~GG~~~lGs~R~ 165 (570)
...||||++|||+|||||+||++++..+...+...+||||++||+||++ +++++||++.++.|+++||+ +|||||.
T Consensus 79 ~~~riaIvtsGG~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GGT-iLGTsR~ 157 (443)
T PRK06830 79 SKVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGT-ILGSSRG 157 (443)
T ss_pred cccEEEEECCCCCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCCc-cccCCCC
Confidence 3489999999999999999999999987655456899999999999998 89999999999999999997 9999996
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHH
Q 008310 166 KIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTF 245 (570)
Q Consensus 166 k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~ 245 (570)
+ +++++++++|++++||+|++||||||+++|..|+|+++++|.+++|||||||||||+++++. |||||||++++
T Consensus 158 ~----~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~--S~GFdTAv~~a 231 (443)
T PRK06830 158 P----QDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQK--SFGFETAVEKA 231 (443)
T ss_pred c----hhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCccc--CCCHHHHHHHH
Confidence 5 36899999999999999999999999999999999999999999999999999999998775 99999999999
Q ss_pred HHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhc-CCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeE
Q 008310 246 SEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQT-HPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFG 324 (570)
Q Consensus 246 se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat-~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~g 324 (570)
+++|+++..||.|++++|++||||||+|||||+++|||+ +||+|||||.++ +|+.. ..+++.|++|.+. ++|+
T Consensus 232 ~~aI~~~~~eA~s~~~rv~iVEvMGR~sG~lA~~aaLA~~~ad~ilIPE~~f----~l~~~-~~ll~~l~~r~~~-~~~~ 305 (443)
T PRK06830 232 TEAIRCAHVEANGAPNGIGLVKLMGRHSGFIAAYAALASKDVNFVLIPEVPF----DLEGP-NGLLAALEKRLAE-RGHA 305 (443)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEECCCcccHHHHHHHHhcCCCCEEEecCCCC----CchhH-HHHHHHHHHHHHh-CCce
Confidence 999999999999998889999999999999999999999 799999999997 44422 3555677777766 9999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHH
Q 008310 325 VVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERM 404 (570)
Q Consensus 325 vIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~l 404 (570)
||||+||+...+.+ . ...+|++||+++.++ ..+
T Consensus 306 VIVVAEGag~~l~~-----------------------------~----------------~~~~Da~gn~~l~~i--g~~ 338 (443)
T PRK06830 306 VIVVAEGAGQELFD-----------------------------D----------------TGETDASGNPKLGDI--GLF 338 (443)
T ss_pred EEEEecCccccccc-----------------------------c----------------cccccccCCcccccH--HHH
Confidence 99999998532111 0 124799999999886 567
Q ss_pred HHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEE
Q 008310 405 LIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTV 484 (570)
Q Consensus 405 L~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~ 484 (570)
|++.++++++++. ..++.+...+||.|||+.||+||+.||+.||..|++++++|+||+|+++++. ++
T Consensus 339 L~~~i~~~~~~~~------~~~~~r~~~pgy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~-------~~ 405 (443)
T PRK06830 339 LKDRIKEYFKARG------IPINLKYIDPSYIIRSVPANANDSVYCGFLGQNAVHAAMAGKTGMVVGRWNN-------RF 405 (443)
T ss_pred HHHHHHHHhcccC------CceEEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-------EE
Confidence 8888777765432 2356677899999999999999999999999999999999999999999986 48
Q ss_pred eccchHhhhhhhhhcCCcccceeeceeccCChhhHHHHH
Q 008310 485 GGTALTSLMHVERRHGKFKPVIKKAMVELEGKPFKTFAS 523 (570)
Q Consensus 485 ~~vPl~~~~~~e~~~g~~~p~i~~~~V~l~~~~f~~~~~ 523 (570)
..+||..+++. +..||.+|..++...+
T Consensus 406 ~~vPl~~v~~~------------~k~vd~~~~~w~~~l~ 432 (443)
T PRK06830 406 VHLPIDLAVSK------------RKKVNPEGDLWRSVLE 432 (443)
T ss_pred EEEeHHHHhcc------------CCCCCCccHHHHHHHH
Confidence 89999999853 2345667777665543
No 21
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=3e-74 Score=609.94 Aligned_cols=351 Identities=20% Similarity=0.222 Sum_probs=297.4
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChh---hhccccccCCceecccCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSE---FIYPYRNQGGFDMLCSGRDK 166 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~---~v~~~~n~GG~~~lGs~R~k 166 (570)
++||||++|||||||||++|+|+++++...+++.+||||++||+||+++++++|+.. .++.++++||+ +|||||.+
T Consensus 3 ~k~i~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~~~~~l~~~~~~~~~~i~~~GGt-~LGtsR~~ 81 (403)
T PRK06555 3 VKKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGS-PIGNSRVK 81 (403)
T ss_pred cCEEEEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCCCceeCChhHhhhhhHHHhCCCc-eeccCCCC
Confidence 579999999999999999999999987666678999999999999999999999985 34558999998 99999987
Q ss_pred CC-------------ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCC
Q 008310 167 IE-------------TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVP 233 (570)
Q Consensus 167 ~~-------------~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie 233 (570)
+. .++.+++++++|++++||+||+||||||+++|+.|++++.++|++++||||||||||||.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~- 160 (403)
T PRK06555 82 LTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQ- 160 (403)
T ss_pred ccccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccC-
Confidence 62 2567899999999999999999999999999999999999989899999999999999998886
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhh--------------------cCCcEEEECC
Q 008310 234 ISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQ--------------------THPNIAIIGE 293 (570)
Q Consensus 234 ~s~GFdTA~k~~se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLa--------------------t~pnivlIpE 293 (570)
|||||||+++++++|++|..||.|++++++|||||||+|||||+.+||| ++||+|||||
T Consensus 161 -t~Gf~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~~~~~~~~~~~~~~~~~~~~~gad~ilIPE 239 (403)
T PRK06555 161 -SLGAWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPE 239 (403)
T ss_pred -CcCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhhccccccccccccccccccCCCCcEEEccC
Confidence 9999999999999999999999999887666699999999999999999 7899999999
Q ss_pred chhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHh
Q 008310 294 EIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELF 373 (570)
Q Consensus 294 e~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf 373 (570)
.++ ++ +.+++.|+++++. ++|+||+|+||+....+. +++ .++++
T Consensus 240 ~~~----~~----e~~~~~ik~~~~~-k~~~iIvVaEG~~~~~~~-----~~~---------~~~g~------------- 283 (403)
T PRK06555 240 MAF----DL----EAEAERLKAVMDE-VGNVNIFLSEGAGLDAIV-----AEM---------EAAGE------------- 283 (403)
T ss_pred CCC----CH----HHHHHHHHHHHHh-CCCEEEEEeCCCCcccch-----hhh---------hhccC-------------
Confidence 987 33 4456667777766 999999999998542111 000 01111
Q ss_pred hhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHHHHHHHHhhccCccccccc-cccccCcccccCCCCCHHHHHHHHH
Q 008310 374 ELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFT-GQPHFFGYEGRCGFPTNFDANYCYA 452 (570)
Q Consensus 374 ~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~g~y~~~f~-~~~~~lGy~~R~~~PS~fD~~~a~~ 452 (570)
...+|++||+++..++....|++.|++++. ++ +|...+||.||||.||+||+.+|++
T Consensus 284 -----------~~~~Da~G~~~l~~~~~g~~la~~i~~~~g-----------~e~~r~~~lGy~qRgg~psa~Dr~la~~ 341 (403)
T PRK06555 284 -----------EVKRDAFGHVKLDTINPGAWFAKQFAELLG-----------AEKVMVQKSGYFARSAPANAEDLRLIKS 341 (403)
T ss_pred -----------ccccccccceecCCCcHHHHHHHHHHHHhC-----------CCceEEecCChhhcCCCCCHHHHHHHHH
Confidence 124799999999998878888888877653 33 6779999999999999999999999
Q ss_pred HHHHHHHHHHcCCCceEEEE---ecCCCCccceEEeccchHhhhhhhhhcCCcccceeeceeccCChhhHHHH
Q 008310 453 LGFASGALLHAGKTGLIASV---GNLGEPVEEWTVGGTALTSLMHVERRHGKFKPVIKKAMVELEGKPFKTFA 522 (570)
Q Consensus 453 lG~~A~~li~~g~tG~m~~i---~~l~~~~~~w~~~~vPl~~~~~~e~~~g~~~p~i~~~~V~l~~~~f~~~~ 522 (570)
||..|++++.+|.|| |+++ +|. ++..+||.+++. + + .|+.+++.|..+.
T Consensus 342 lG~~AV~~~~~G~sg-~v~~~~~~~g-------~~~~vp~~~~~~--~-----k------~~~~~~~~~~~~~ 393 (403)
T PRK06555 342 MVDLAVECALRGVSG-VIGHDEEQGG-------KLRAIEFPRIKG--G-----K------AFDTSTPWFTELL 393 (403)
T ss_pred HHHHHHHHHHCCCCC-eEEEEeeeCC-------EEEEEEHHHHhc--C-----C------CCCCCHHHHHHHH
Confidence 999999999999999 5666 665 478999998764 1 1 2456676666543
No 22
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=2.9e-74 Score=598.28 Aligned_cols=301 Identities=31% Similarity=0.435 Sum_probs=268.5
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCC-CCC
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDK-IET 169 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k-~~~ 169 (570)
+||||++|||||||||++|+|+++++. ..+.+||||++||+||+++++++|+++.++.|.++||+ +|||+|.. +.+
T Consensus 1 ~~IaIltsGG~apGmNa~i~~vv~~a~--~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~LgtsR~~~~~~ 77 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAI--AEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGT-FLGSARFPEFKD 77 (317)
T ss_pred CEEEEEccCCCcHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCe-eeccCCCCccCC
Confidence 589999999999999999999999854 45889999999999999999999999999999999998 99999974 667
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHH
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVI 249 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I 249 (570)
++++++++++|++++||+|++||||||+++|..|+|+ +++|||||||||||++++|+ |||||||++++++.|
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~------~i~vigiPkTIDNDi~gtd~--t~Gf~TA~~~~~~~i 149 (317)
T cd00763 78 EEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH------GFPCVGLPGTIDNDIPGTDY--TIGFDTALNTVVEAI 149 (317)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc------CCCEEEecccccCCCCCCcc--CCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999996 48899999999999999875 999999999999999
Q ss_pred HHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 008310 250 GNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLIS 329 (570)
Q Consensus 250 ~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~ 329 (570)
+++..++.|+ ++|||||+|||+|||||++||||++||+|||||+++ +++ ++++.|++|+++|++|+|||++
T Consensus 150 ~~i~~ta~s~-~rv~ivEvMGR~~G~LA~~~ala~ga~~iliPE~~~----~~~----~~~~~i~~~~~~g~~~~vivva 220 (317)
T cd00763 150 DRIRDTSSSH-QRISVVEVMGRHCGDIALAAGIAGGAEFIVIPEAEF----DRE----EVANRIKAGIERGKKHAIVVVA 220 (317)
T ss_pred HHHHHHHhcC-CCEEEEEeCCCChHHHHHHHHHHcCCCEEEeCCCCC----CHH----HHHHHHHHHHHcCCCcEEEEEe
Confidence 9997666665 679999999999999999999999999999999986 444 4555677888889999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHH
Q 008310 330 EGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQMV 409 (570)
Q Consensus 330 EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV 409 (570)
||+..- ..|++++
T Consensus 221 EG~~~~-------------------------------------------------------------------~~l~~~l 233 (317)
T cd00763 221 EGVYDV-------------------------------------------------------------------DELAKEI 233 (317)
T ss_pred CCCCCH-------------------------------------------------------------------HHHHHHH
Confidence 997420 0123333
Q ss_pred HHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccch
Q 008310 410 EAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTAL 489 (570)
Q Consensus 410 ~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~~vPl 489 (570)
++++ .+++|...+||.||||.||+||+.+|++||..|++++.+|++|+|+++++. ++..+||
T Consensus 234 ~~~~-----------g~~~r~~~lG~~qRgg~p~~~Dr~~a~~lg~~Av~~~~~g~~~~mv~~~~~-------~~~~~pl 295 (317)
T cd00763 234 EEAT-----------GFETRATVLGHIQRGGSPTAFDRILASRMGAYAVELLLAGKGGLAVGIQNE-------QLVHHDI 295 (317)
T ss_pred HHHh-----------CCCcceeccchhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEEECC-------EEEEecH
Confidence 3333 356778999999999999999999999999999999999999999999986 5889999
Q ss_pred Hhhhhhh
Q 008310 490 TSLMHVE 496 (570)
Q Consensus 490 ~~~~~~e 496 (570)
.++++.+
T Consensus 296 ~~~~~~~ 302 (317)
T cd00763 296 IDAIENM 302 (317)
T ss_pred HHHhhCC
Confidence 9998754
No 23
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=3.6e-71 Score=627.29 Aligned_cols=352 Identities=22% Similarity=0.303 Sum_probs=301.2
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCC--CEEECChhhhccccccCCceecccCCCC-C
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKC--KFVELSSEFIYPYRNQGGFDMLCSGRDK-I 167 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~lGs~R~k-~ 167 (570)
+||||++|||||||||++|+++++.+ .+.+.+||||++||+||+++ ++++|+|++++.+.++||+ +|||+|.+ +
T Consensus 1 krIaIltsGGdapGmNaaIravv~~a--~~~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt-~LGtsR~~~~ 77 (745)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMA--IYVGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGT-IIGTARCKEF 77 (745)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHH--HHCCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCc-eecCCCCCcc
Confidence 58999999999999999999999974 45689999999999999999 9999999999999999997 99999987 5
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHH-----------------hcCCCCceEEEeeccccCCCCCC
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENF-----------------RSKDMKTRVIGCPKTIDGDLKCK 230 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~-----------------~~~g~~i~VIgVPKTIDNDL~~~ 230 (570)
.+++.+++++++|++++||+||+||||||+++|..|++++ ++++.+++|||||||||||++++
T Consensus 78 ~~~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gT 157 (745)
T TIGR02478 78 RERPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGT 157 (745)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCC
Confidence 6778899999999999999999999999999999877632 44566899999999999999998
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHH
Q 008310 231 DVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYIT 310 (570)
Q Consensus 231 ~ie~s~GFdTA~k~~se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~ 310 (570)
|+ |||||||+++++++|+++..+|.|++| +||||||||+||||||++|||++||+|||||+++... ..++||
T Consensus 158 d~--TiGfdTA~~~i~~aid~i~~ta~Sh~R-~fvvEvMGR~~G~LAl~aalA~gad~iliPE~~~~~~-----~~~~i~ 229 (745)
T TIGR02478 158 DM--TIGADSALHRICEAIDAISSTAQSHQR-AFVVEVMGRHCGYLALMAAIATGADYVFIPERPPEEG-----WEDQLC 229 (745)
T ss_pred cC--CCCHHHHHHHHHHHHHHHHhhhhccCC-EEEEEEcCccccHHHHHHHhccCCCEEEecCCCCCch-----HHHHHH
Confidence 86 999999999999999999999999865 7899999999999999999999999999999997543 578888
Q ss_pred HHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCC
Q 008310 311 DIICKRSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDP 390 (570)
Q Consensus 311 d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~ 390 (570)
+.+++++..|++|+||||+||+.+ .
T Consensus 230 ~~l~~~~~~gk~~~iIvvaEG~~d-------------------------------------------------------~ 254 (745)
T TIGR02478 230 HKLKRNRKAGKRKNIVIVAEGAID-------------------------------------------------------R 254 (745)
T ss_pred HHHHHHHHcCCCcEEEEEeCCccc-------------------------------------------------------c
Confidence 899999899999999999999863 1
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC---c
Q 008310 391 HGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKT---G 467 (570)
Q Consensus 391 ~Gn~~ls~i~te~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~t---G 467 (570)
+||+.. ...|++.+++++ ++++|...+||.||||.||+||+.+|+.||..|++++.+|.+ |
T Consensus 255 ~g~~i~-----~~~l~~~l~~~~-----------g~~~R~~~LGh~QRgg~Psa~Dr~la~~~G~~Av~~~~~g~~~~~~ 318 (745)
T TIGR02478 255 DLNPIT-----SEDVKDVLVERL-----------GLDTRITVLGHVQRGGAPSAYDRILATRQGVEAVLAVLESTPETPS 318 (745)
T ss_pred cCCccc-----HHHHHHHHHHhc-----------CCceEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 222211 123444444332 467888999999999999999999999999999999999987 9
Q ss_pred eEEEEecCCCCccceEEeccchHhhhhhhhhcCCc---ccceeeceeccCChhhHHHHHhhcccccccc
Q 008310 468 LIASVGNLGEPVEEWTVGGTALTSLMHVERRHGKF---KPVIKKAMVELEGKPFKTFASLREDWTIKNL 533 (570)
Q Consensus 468 ~m~~i~~l~~~~~~w~~~~vPl~~~~~~e~~~g~~---~p~i~~~~V~l~~~~f~~~~~~r~~w~~~d~ 533 (570)
+|+++++ |++..+||.++++.++...+. +-| ..-++|.|..|...-..-..-...+.
T Consensus 319 ~mv~~~~-------~~~~~~pl~~~~~~~k~v~~~~~~~~~--~~a~~~r~~~f~~~~~~~~~~~~~~~ 378 (745)
T TIGR02478 319 PVISLRG-------NKIVRKPLVEAVAQTKTVAKAIKEKRF--AEAMRLRGREFVENLATFLFLSIPDQ 378 (745)
T ss_pred EEEEEEC-------CEEEEEeHHHHHhhcCCCCHHHHhccH--HHHHHhcCHHHHHHHHHHHhhhccCC
Confidence 9999998 569999999999977764432 212 23457899999877665555554443
No 24
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=9e-71 Score=564.80 Aligned_cols=281 Identities=36% Similarity=0.531 Sum_probs=247.3
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCC-CCC
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDK-IET 169 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k-~~~ 169 (570)
|||||++|||||||||++|+|+++++. ..+++||||++||+||+++++++|++++++.|.++||+ +|||+|++ +.+
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~--~~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt-~lgtsR~~~~~~ 77 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAI--RRGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGT-ILGTSRFKPFKD 77 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHH--HTTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSS-TTTBBBSSGGGS
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHH--hcCCEEEEEEccCccceeeeEEeecccCccccccCCCc-EeCcccCccccc
Confidence 699999999999999999999999854 57899999999999999999999999999999999998 99999987 667
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHH
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVI 249 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I 249 (570)
++.+++++++|++++||+||+||||||+++|+.|+|++. ++|||||||||||++++|. |||||||+++++++|
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~-----i~vigiPkTIDNDi~gtd~--siGf~TA~~~~~~~i 150 (282)
T PF00365_consen 78 PEGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFG-----IPVIGIPKTIDNDIPGTDY--SIGFDTAVNYIAEAI 150 (282)
T ss_dssp HHHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHH-----SEEEEEEEETTSSCTTSSS---BTHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc-----eEEEEEeccccCCcCCCCC--CcccCchhHHHHHHH
Confidence 888999999999999999999999999999999998764 8999999999999999875 999999999999999
Q ss_pred HHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEEe
Q 008310 250 GNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLIS 329 (570)
Q Consensus 250 ~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~ 329 (570)
++++.||.|+ ++|||||+|||+|||||++||||++||+|||||+++ ..+.+++.|++|.+++|+|++|+|+
T Consensus 151 ~~i~~~a~s~-~rv~ivEvmGr~~G~LAl~~ala~~a~~ilipE~~~--------~~~~~~~~i~~~~~~~k~~~iVvvs 221 (282)
T PF00365_consen 151 DNIKTTARSH-NRVFIVEVMGRNAGWLALAAALATGADLILIPEEPF--------DLDELLDDIKKRYERGKRYGIVVVS 221 (282)
T ss_dssp HHHHHHHHHS-TEEEEEEESSTTSTHHHHHHHHHHTSSEEEBTTSHH--------HHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred HHHHHhhccc-CCceEEEeCCCCcCHHHHHHHhccCCCEEEEecccc--------chHHHHHHhhhhhcccCceEEEEec
Confidence 9999999887 569999999999999999999999999999999984 3677888899999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHHH
Q 008310 330 EGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQMV 409 (570)
Q Consensus 330 EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~lV 409 (570)
||+.+..|-. .+++
T Consensus 222 EG~~~~~~i~------------------------------------------------------------------~~~~ 235 (282)
T PF00365_consen 222 EGAKDGQPIS------------------------------------------------------------------SEFI 235 (282)
T ss_dssp TTSBSSHBHH------------------------------------------------------------------HHHH
T ss_pred cccccccccc------------------------------------------------------------------cccc
Confidence 9997521100 1112
Q ss_pred HHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHc
Q 008310 410 EAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHA 463 (570)
Q Consensus 410 ~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~ 463 (570)
++.++++ ..+++|...|||.||||.||+|||.+|..||..|++++.+
T Consensus 236 ~~~~~~~-------~~~~~r~~~lGh~Qrgg~P~~~DR~la~~~g~~Av~~i~e 282 (282)
T PF00365_consen 236 KELLEEG-------LGFDVRVTILGHLQRGGTPSAFDRILATRFGIKAVEAILE 282 (282)
T ss_dssp HHHHHHT-------TTSEEEEEE-GGGGGTSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccc-------cccceeecccchhhcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 2222221 2588899999999999999999999999999999999864
No 25
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=3.7e-70 Score=616.47 Aligned_cols=352 Identities=23% Similarity=0.292 Sum_probs=298.4
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCC--CEEECChhhhccccccCCceecccCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKC--KFVELSSEFIYPYRNQGGFDMLCSGRDK 166 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~lGs~R~k 166 (570)
..+||||++|||||||||++|+++++.+ .+.+.+||||++||+||+++ ++++++|++++.|.++||+ +|||+|.+
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a--~~~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT-~LGTsR~~ 78 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMG--IYVGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGT-IIGSARCK 78 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHH--HHCCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCC-cccCCCCC
Confidence 3579999999999999999999999884 55689999999999999999 8999999999999999998 99999987
Q ss_pred -CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHH-----------------HHHhcCCCCceEEEeeccccCCCC
Q 008310 167 -IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLA-----------------ENFRSKDMKTRVIGCPKTIDGDLK 228 (570)
Q Consensus 167 -~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~La-----------------e~~~~~g~~i~VIgVPKTIDNDL~ 228 (570)
+.+++++.+++++|++++||+||+||||||+++|..|+ ++..+++..++|||||||||||++
T Consensus 79 ~f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~ 158 (762)
T cd00764 79 EFREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFC 158 (762)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCC
Confidence 56678999999999999999999999999999999775 223345568999999999999999
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHH
Q 008310 229 CKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDY 308 (570)
Q Consensus 229 ~~~ie~s~GFdTA~k~~se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~ 308 (570)
++|+ |||||||+++++++|++|..||.|++| +||||||||+||||||++|||++||+|||||.++. .++.++
T Consensus 159 gTD~--TiGfdTAl~~i~eaId~i~~tA~Sh~R-~fVVEvMGR~~G~LAl~aglA~gAd~ilIPE~p~~-----~~~~~~ 230 (762)
T cd00764 159 GTDM--TIGTDSALHRICEVVDAITTTAQSHQR-TFVLEVMGRHCGYLALVSGLATGADWIFIPERPPE-----DGWEDQ 230 (762)
T ss_pred CCcC--CCCHHHHHHHHHHHHHHHHHHHHhcCC-EEEEEECCCCchHHHHHHHhccCCCEEEecCCCCc-----hhHHHH
Confidence 9886 999999999999999999999999965 79999999999999999999999999999999975 356788
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcC
Q 008310 309 ITDIICKRSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLER 388 (570)
Q Consensus 309 i~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~r 388 (570)
||+.+.+|+..||+|+||||+||+.+.
T Consensus 231 i~~~l~~~~~~gk~~~iIVVaEGa~d~----------------------------------------------------- 257 (762)
T cd00764 231 MCRRLSEHRSRGKRLNIIIVAEGAIDD----------------------------------------------------- 257 (762)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCccc-----------------------------------------------------
Confidence 999999999999999999999998641
Q ss_pred CCCCCcccchhhhHHHHHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC--
Q 008310 389 DPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKT-- 466 (570)
Q Consensus 389 D~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~t-- 466 (570)
+|+.. ++..|++.+++++ .+++|...+||.||||.||+||+.||+.||..|++++.+|.+
T Consensus 258 --~g~~i-----~~~~l~~~l~~~~-----------g~d~R~t~LGh~QRGG~Psa~Dr~la~~~G~~AV~~l~~g~~~~ 319 (762)
T cd00764 258 --QLKPI-----TSEDVKDLVVERL-----------GLDTRVTTLGHVQRGGTPSAFDRILASLMGVEAVMALLEATPDT 319 (762)
T ss_pred --cCCCc-----cHHHHHHHHHHhc-----------CCCeeEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 11111 1123344443332 478899999999999999999999999999999999999986
Q ss_pred -ceEEEEecCCCCccceEEeccchHhhhhhhhhcCCc---ccceeeceeccCChhhHHHHHhhcccccc
Q 008310 467 -GLIASVGNLGEPVEEWTVGGTALTSLMHVERRHGKF---KPVIKKAMVELEGKPFKTFASLREDWTIK 531 (570)
Q Consensus 467 -G~m~~i~~l~~~~~~w~~~~vPl~~~~~~e~~~g~~---~p~i~~~~V~l~~~~f~~~~~~r~~w~~~ 531 (570)
++|+++++.+ +..+||.++++..+...+. |-+ ..-++|.|..|...-.....-...
T Consensus 320 ~~~~i~~~~~~-------i~~~pl~e~v~~~k~v~~~~~~~~~--~~a~~lr~~~f~~~~~~~~~~~~~ 379 (762)
T cd00764 320 PACVVSLNGNK-------AVRLPLMECVQLTKDVQKAMDEKRF--DEAAALRGKSFDKNWNLYKLLAIE 379 (762)
T ss_pred CCEEEEEECCE-------EEEEEHHHHHhhccchhhhhhhhhH--HHHHHhcchhHHHHHHHHHhcccc
Confidence 8999999974 7899999998866544321 222 233578888888765554444433
No 26
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=7.7e-69 Score=608.28 Aligned_cols=329 Identities=20% Similarity=0.290 Sum_probs=289.5
Q ss_pred CCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCC
Q 008310 87 ENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDK 166 (570)
Q Consensus 87 ~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k 166 (570)
...++||||++|||||||||++|+|+++++ .+.+.+||||++||+||+++++.+|++.+++.|+++||+ +|||+|..
T Consensus 386 ~~~~~rIaIltsGG~apGmNaair~vv~~a--~~~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LgtsR~~ 462 (745)
T TIGR02478 386 KASRLRIAIIHVGAPAGGMNAATRSAVRYA--IARGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGS-ELGTNREL 462 (745)
T ss_pred CCCceEEEEEecCCCchhHHHHHHHHHHHH--HhCCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCc-ccccCCCC
Confidence 355689999999999999999999999885 456889999999999999999999999999999999998 99999985
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhc-CCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHH
Q 008310 167 IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRS-KDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTF 245 (570)
Q Consensus 167 ~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~-~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~ 245 (570)
. ++++++++++|++++||+||+||||||+++|..|+++..+ .+.+++||||||||||||+++++ |||||||++++
T Consensus 463 ~--~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~--t~GfdTA~~~~ 538 (745)
T TIGR02478 463 P--GKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEY--SLGSDTALNEI 538 (745)
T ss_pred c--hhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcc--CCCHHHHHHHH
Confidence 4 6789999999999999999999999999999999998443 23679999999999999998886 99999999999
Q ss_pred HHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcC-CCeE
Q 008310 246 SEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAG-YNFG 324 (570)
Q Consensus 246 se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~g-k~~g 324 (570)
+++|++++.+|.|++++|||||||||+|||||++||||++||+|||||+++ +++++.+.+.. +.+|...+ ++|+
T Consensus 539 ~~~id~i~~ta~s~~~rv~iVEvMGR~~G~LAl~~alA~gad~iliPE~~~----~~~~l~~~v~~-i~~~~~~~~~~~~ 613 (745)
T TIGR02478 539 TEYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLATGADAAYIPEEGI----SLKDLQEDIEH-LKEKFAHGNRAGK 613 (745)
T ss_pred HHHHHHHHHhhHhcCCcEEEEEecCccccHHHHHHHhhcCCCEEEeCCCCC----CHHHHHHHHHH-HHHHHhcCCCCce
Confidence 999999999999998789999999999999999999999999999999976 67777776644 67888888 8999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHH
Q 008310 325 VVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERM 404 (570)
Q Consensus 325 vIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~l 404 (570)
+|+++||+.+.. +...
T Consensus 614 iiv~~Eg~~~~~----------------------------------------------------------------~~~~ 629 (745)
T TIGR02478 614 LILRNENASKNY----------------------------------------------------------------TTDF 629 (745)
T ss_pred EEEEeCCCccCC----------------------------------------------------------------CHHH
Confidence 999999974310 0123
Q ss_pred HHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcC------------CCceEEEE
Q 008310 405 LIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAG------------KTGLIASV 472 (570)
Q Consensus 405 L~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g------------~tG~m~~i 472 (570)
|+++++++++ ..|++|...+||.||||.||+||+.+|++||..|++++.+| .+|+|+++
T Consensus 630 l~~~i~~e~~---------~~~~~R~~~LG~~QRgg~ps~~Dr~~a~~lG~~Av~~~~~~~~~~~~~~~~~~~~~~~vg~ 700 (745)
T TIGR02478 630 IARIISEEAK---------GRFDARTAVLGHMQQGGSPSPFDRNRATRLAIRAVDFIEEKIKKSADKLGADDTSAVVIGI 700 (745)
T ss_pred HHHHHHHHhc---------CCCceEeccCCccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccccccccCCCccEEEEE
Confidence 5566655542 35889999999999999999999999999999999999998 79999999
Q ss_pred ecCCCCccceEEeccchHhhhh----hhhhcCCccccee
Q 008310 473 GNLGEPVEEWTVGGTALTSLMH----VERRHGKFKPVIK 507 (570)
Q Consensus 473 ~~l~~~~~~w~~~~vPl~~~~~----~e~~~g~~~p~i~ 507 (570)
++.+ +..+|+.++|+ .+.|.++..+|.+
T Consensus 701 ~~~~-------~~~~p~~~~~~~~~d~~~r~p~~~~w~~ 732 (745)
T TIGR02478 701 RGSN-------VLFTPVKGLLAKETDFEHRRPKNQWWLD 732 (745)
T ss_pred ECCE-------EEEEEHHHHHhhccCcccCCCCCchhhh
Confidence 9874 78999998664 5667788887764
No 27
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=7.1e-65 Score=573.62 Aligned_cols=329 Identities=19% Similarity=0.248 Sum_probs=283.2
Q ss_pred CCCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCC
Q 008310 86 MENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRD 165 (570)
Q Consensus 86 ~~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~ 165 (570)
+...++||||++|||||||||++|++++++ +...+.+||||++||+||+++++++|+|++++.|.++||+ +|||+|.
T Consensus 385 ~~~~~~~IaIltsGG~apGmNaairavv~~--a~~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt-~LGT~R~ 461 (762)
T cd00764 385 PEKTNLNIAIVNVGAPAAGMNAAVRSAVRY--GLAHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGS-ELGTKRT 461 (762)
T ss_pred CcccccEEEEEecCCCchhHHHHHHHHHHH--HHHCCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcc-cccccCC
Confidence 344568999999999999999999999988 4556899999999999999999999999999999999998 9999998
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhc-CCCCceEEEeeccccCCCCCCCCCCCCChhhHHHH
Q 008310 166 KIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRS-KDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKT 244 (570)
Q Consensus 166 k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~-~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~ 244 (570)
+. ++++++++++|++++||+||+||||||+++|..|+++..+ ....++|||||||||||++++++ |||||||+++
T Consensus 462 ~~--~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~--siGfdTAln~ 537 (762)
T cd00764 462 LP--KKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDF--SLGSDTALNA 537 (762)
T ss_pred Cc--HHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcC--CCCHHHHHHH
Confidence 85 5789999999999999999999999999999999997643 23569999999999999999886 9999999999
Q ss_pred HHHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeE
Q 008310 245 FSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFG 324 (570)
Q Consensus 245 ~se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~g 324 (570)
++++|++|+.+|.|+++++||||||||+|||||+++|||++|++|||||++++.+ .|...++.+++.++++...|+.+.
T Consensus 538 ~~~~id~i~~tA~s~~~RvfVVEvMGR~~G~LA~~aglA~GAd~i~iPE~~~~~~-~l~~dv~~l~~~~~~~~~~g~~~~ 616 (762)
T cd00764 538 LMKYCDRIKQSASGTKRRVFIVETMGGYCGYLATMTGLAVGADAAYVFEEPFNIR-DLQENVEHLTEKMKTTIGRGLVLR 616 (762)
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEeCCCCccHHHHHHHhhcCCCEEEeCCCCCCHH-HHHHHHHHHHHHHHHHHhcCCeEe
Confidence 9999999998888887789999999999999999999999999999999987543 233335667788888888999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHH
Q 008310 325 VVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERM 404 (570)
Q Consensus 325 vIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~l 404 (570)
+++++||... ..
T Consensus 617 ~~~~se~~~~--------------------------------------------------------------------~~ 628 (762)
T cd00764 617 NEKCNENYTT--------------------------------------------------------------------VF 628 (762)
T ss_pred eeeeecCCcc--------------------------------------------------------------------cc
Confidence 9999999621 01
Q ss_pred HHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC---------------CceE
Q 008310 405 LIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGK---------------TGLI 469 (570)
Q Consensus 405 L~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~---------------tG~m 469 (570)
++++++++++ +.|++|+..+||.||||.||+|||.+|.+||..|++++.+.. +.++
T Consensus 629 ~~~~~~~~~~---------~~~~~R~~vLGh~QrGG~Ps~~DR~latr~g~~Av~~l~~~~~~~~~~~~~~~~~~~~~~~ 699 (762)
T cd00764 629 TYELYSEEGK---------GVFDCRTNVLGHVQQGGAPSPFDRNFGTKFAVKAMKWIEQKLKENYAAGNEFANDPDFNCV 699 (762)
T ss_pred HHHHHHHHHh---------cCCceEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCceEE
Confidence 1223344442 258999999999999999999999999999999999999853 6778
Q ss_pred EEEecCCCCccceEEeccchHhhhh--hhhhcCCcccce
Q 008310 470 ASVGNLGEPVEEWTVGGTALTSLMH--VERRHGKFKPVI 506 (570)
Q Consensus 470 ~~i~~l~~~~~~w~~~~vPl~~~~~--~e~~~g~~~p~i 506 (570)
+++++.. +...|+..|.. .++|.++..+|.
T Consensus 700 ig~~~~~-------~~~~~~~~~~~~~~~~r~p~~~~w~ 731 (762)
T cd00764 700 NGVKKYA-------VLFEPVEELKQTTFEHRIPKEQWWL 731 (762)
T ss_pred EEEeCCE-------EEEeeHHHHHHhhhhcCCCcchhhH
Confidence 8888764 66778877754 455677777765
No 28
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.2e-58 Score=502.23 Aligned_cols=549 Identities=25% Similarity=0.237 Sum_probs=470.7
Q ss_pred CccccCCCHhhhhhcCCCCCCccccccc--cceecCCCCCCCCChhHHHhhCCcccCCCee------EEecCCccccccC
Q 008310 15 GRVASIYTELQISRMNVSLPLPSVLKNT--FNVVDDAASSAAGDPEEIKKLFPKFYGQPSA------RLVECDPMACTLM 86 (570)
Q Consensus 15 ~~~~~~~s~l~~~r~~~~p~lp~~l~~~--~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~------~~~~~~~~~~~~~ 86 (570)
.|..+.++++|-.|..|.|.+|..+.+. .....+......+..+.|.+.||++++.+-- ...+.+ ...-
T Consensus 40 ~~g~~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~gr~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e---~~~~ 116 (666)
T KOG2440|consen 40 VRGGDSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREGRLAAADNLIARGIPNLVVIGGDGSLTGARAFPRE---WIYL 116 (666)
T ss_pred cccccchhhcchhhhCCcccCCCcccccccccccccccceeccchhHHHhhcCeeEecCCccchhHhhhCchh---cccc
Confidence 3444678999999999999999999876 4444444455568899999999999887632 112211 0112
Q ss_pred CCCccEEEEEecCCCCchhhHHHHHHHHHHH--------HhcCCCEEEE---------EeCCcccccCCCEEECChhhhc
Q 008310 87 ENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQ--------ERTKGSKLYG---------FRGGPAGIMKCKFVELSSEFIY 149 (570)
Q Consensus 87 ~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~--------~~~~~~~v~G---------f~~G~~GLl~~~~~eLt~~~v~ 149 (570)
..+..+.|||++||+|||+|+||+|++-.+. -...++-+.+ |..|++|++...+.++.-...-
T Consensus 117 ~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~evmgr~cg~lal 196 (666)
T KOG2440|consen 117 EEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVAEVMGRHCGYLAL 196 (666)
T ss_pred chHHhhcceeecccccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEEeeehhhccchHHH
Confidence 3345799999999999999999997664432 2222333333 5667999999999777776666
Q ss_pred cccccCCceecccCCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCC
Q 008310 150 PYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKC 229 (570)
Q Consensus 150 ~~~n~GG~~~lGs~R~k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~ 229 (570)
-+.+.+|+|+|...+...+++||+.++++.+++.++|.+|||||++++++|..++|++++..+++.|++||||||||++.
T Consensus 197 v~~ia~~aD~i~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv~g~p~TilGdvqr 276 (666)
T KOG2440|consen 197 VAAIAGGADTIFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVVGVPKTILGDVQR 276 (666)
T ss_pred HHHhhcCCCEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheeeecceeeecCcccc
Confidence 66666666777777777778999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHH
Q 008310 230 KDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYI 309 (570)
Q Consensus 230 ~~ie~s~GFdTA~k~~se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i 309 (570)
-+..+.|+|+|||+..+++|.+++.++.|+-++++|||+|||.|+|+|++|++|++++.+.+.+|....+.++.+....+
T Consensus 277 gg~p~afDr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr~~~f~~~~~~~~~ 356 (666)
T KOG2440|consen 277 GGVPSAFDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFCLAPELRGRKFTLNLNTYKI 356 (666)
T ss_pred CCcccccchHHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCccceeehhhhcchhhhhhhhHHhh
Confidence 77644444449999999999999999999999999999999999999999999999987777777878888999999999
Q ss_pred HHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCC
Q 008310 310 TDIICKRSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERD 389 (570)
Q Consensus 310 ~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD 389 (570)
++++..|.....+|+. ++++++.|.++.+.|.++++.++.....+.++-|...++.+..+. +++|..+..++....+
T Consensus 357 ~~~~~~~~~~~p~~~~--~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~-d~~~~~~~~dv~~w~~ 433 (666)
T KOG2440|consen 357 LDVVDPRAEQDPFYGE--IPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAK-DALGELIWKDVGLWLS 433 (666)
T ss_pred hhccccccccCCCCce--eccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhh-hhhhhhHHHHhhcccc
Confidence 9999999999999999 999999999999999999999876555444444777777777777 9999999999999999
Q ss_pred CCCCcccchhhh-HHHHHHHHHHHHHHhhccCcccc-ccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCc
Q 008310 390 PHGNVQVAKIET-ERMLIQMVEAELNKRKQKGTYKG-QFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTG 467 (570)
Q Consensus 390 ~~Gn~~ls~i~t-e~lL~~lV~~~L~~r~~~g~y~~-~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG 467 (570)
++|+.+..+++| |++..++|+.++.+|+..+.|.. .|.+..|+++|++|++.|+.||+.||+..+..+-..--.+.++
T Consensus 434 ~ggs~~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snnvpgt~~s~ 513 (666)
T KOG2440|consen 434 QGGSALGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNNVPGTEFSL 513 (666)
T ss_pred cCchhheecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCCcccccccc
Confidence 999999999998 89999999999999999998876 9999999999999999999999999999999988777788899
Q ss_pred eEEEEecCCCCccceEEeccchHhhhhhhhh--cCCc---------ccceeeceeccCChhhHHHHHhhccccccccccC
Q 008310 468 LIASVGNLGEPVEEWTVGGTALTSLMHVERR--HGKF---------KPVIKKAMVELEGKPFKTFASLREDWTIKNLYAS 536 (570)
Q Consensus 468 ~m~~i~~l~~~~~~w~~~~vPl~~~~~~e~~--~g~~---------~p~i~~~~V~l~~~~f~~~~~~r~~w~~~d~y~~ 536 (570)
.+.+..|...+..+|.....+++..+-++.+ .|.. .|.+.+++|.+.+.+|+.|.+.++.|++++.|.+
T Consensus 514 gvdt~~N~~~~~~d~t~Q~a~~T~~~vf~~e~~gg~~gyla~~~~l~~ga~~a~v~e~~~~~~~l~~~~~~~~~k~~~~~ 593 (666)
T KOG2440|consen 514 GVDTALNAWARVCDSTKQSAFGTKRRVFVVETMGGYSGYLATMTGLAPGADAAYVPEEGFSIKDLRENAEHLAEKMRYGN 593 (666)
T ss_pred ccchhHhhhhhhhhhccCCcccccceeEEEEecCCCccceeccccccccccccccccccccHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999999887776 5554 8999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCcceeeec----ccCCchhHhhhc
Q 008310 537 PGPIQFSGPTANDINHTLMLE----LGQGQPAQAKLN 569 (570)
Q Consensus 537 pGpiq~~g~~~~~~~~tl~~e----~~~~~~~~~~~~ 569 (570)
|+|+||.+|.+|....|+.+| .+....+|++++
T Consensus 594 ~~~l~~r~e~a~~~~~t~~~~~~~~~~~~~~f~~~~~ 630 (666)
T KOG2440|consen 594 PRGLQLRNEGADANYTTLFLENIYSEEGKGKFQARTN 630 (666)
T ss_pred CCceEEeCCCcchhhhHHHHHHHHhhhcccccceeec
Confidence 999999999999999999999 666666776654
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-34 Score=318.06 Aligned_cols=355 Identities=21% Similarity=0.258 Sum_probs=275.9
Q ss_pred EEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCC--EEECChhhhccccccCCceecccCCCC-CCChH
Q 008310 95 VVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCK--FVELSSEFIYPYRNQGGFDMLCSGRDK-IETPE 171 (570)
Q Consensus 95 Iv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~--~~eLt~~~v~~~~n~GG~~~lGs~R~k-~~~~e 171 (570)
|+||||++||||++++.+++. ..+.+.++|+++.||.||+++. +.+.+|+.++.|...||+ ++|+.|.+ +...+
T Consensus 1 v~tsggd~~gmnaavr~~vr~--~i~~g~~~~~i~egy~gl~~g~~~i~e~~w~~v~~~~~lggt-~~g~ar~~~f~~~~ 77 (666)
T KOG2440|consen 1 VLTSGGDSQGMNAAVRAVVRM--GIYRGCKVYLIYEGYEGLVRGGDSIKEAQWLRVSYILSLGGT-LIGTARCKAFRGRE 77 (666)
T ss_pred CcCCCCCCCCccHHHHHHHHh--ccccCceEEEEecccccccccccchhhcchhhhCCcccCCCc-cccccccccccccc
Confidence 689999999999999999998 6788999999999999999965 789999999999999998 99999976 77889
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHh-----------------cCCCCceEEEeeccccCCCCCCCCCC
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFR-----------------SKDMKTRVIGCPKTIDGDLKCKDVPI 234 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~-----------------~~g~~i~VIgVPKTIDNDL~~~~ie~ 234 (570)
.+.++...+-..+|+.|+++|||+|++.|+.+-+++. ..+..+.|+|++.|||||+.+++-
T Consensus 78 gr~~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~-- 155 (666)
T KOG2440|consen 78 GRLAAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDM-- 155 (666)
T ss_pred ceeccchhHHHhhcCeeEecCCccchhHhhhCchhccccchHHhhcceeecccccccCccEEEEEeccccccccccce--
Confidence 9999999999999999999999999999998866652 357789999999999999998885
Q ss_pred CCChhhHHHHHHHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHH
Q 008310 235 SFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIIC 314 (570)
Q Consensus 235 s~GFdTA~k~~se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~ 314 (570)
++|-|||..- ++|+.|..++.|+.+. |++|+|||+|||+|+-.++|+++|++++||.+... -+++|+++.
T Consensus 156 ~iG~dsal~r--e~id~~~~ta~sh~Rg-Fv~evmgr~cg~lalv~~ia~~aD~i~~pe~~~~~-------~~q~~~~l~ 225 (666)
T KOG2440|consen 156 TIGIDSALHR--EAIDAITSTAQSHSRG-FVAEVMGRHCGYLALVAAIAGGADTIFIPERPGED-------PEQLCEILD 225 (666)
T ss_pred eeccccchhh--hhhhhhhhhhccCcce-EEeeehhhccchHHHHHHhhcCCCEEEecCCCCCC-------HHHHHHHHH
Confidence 9999999988 9999999999999875 89999999999999999999999999999998753 345555554
Q ss_pred HHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCc
Q 008310 315 KRSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNV 394 (570)
Q Consensus 315 ~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~ 394 (570)
.-..+| ..+|+|.||.++. +|.
T Consensus 226 ~~r~~G--ln~viVigG~~~~----------------------~ga---------------------------------- 247 (666)
T KOG2440|consen 226 SIRKRG--LNIVIVIGGAIDN----------------------TGA---------------------------------- 247 (666)
T ss_pred HHHhCC--CCEEEEEecccCC----------------------CCC----------------------------------
Confidence 444456 6689999998752 111
Q ss_pred ccchhhhHHHHHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEec
Q 008310 395 QVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGN 474 (570)
Q Consensus 395 ~ls~i~te~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~ 474 (570)
.++++-|+++.-++ ..+.++.+.+||.||++.||+||+.+|..+|..|+..+...... ++++
T Consensus 248 --------~i~ae~vk~~~~k~-------lv~g~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s---~~~g 309 (666)
T KOG2440|consen 248 --------PIIAEEVKERKLKV-------LVVGVPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEAES---AENG 309 (666)
T ss_pred --------cccHHHHHHhhhhe-------eeecceeeecCccccCCcccccchHHHHHHHHHHHHHHHhhchh---hccc
Confidence 12233445554444 24678889999999999999999999999999999888765543 2332
Q ss_pred CCCCccceEEeccchHhhhhhhhhc-CCcccceeeceeccCChhhHHHHHhhcccc------c-ccccc-CCCcccccCC
Q 008310 475 LGEPVEEWTVGGTALTSLMHVERRH-GKFKPVIKKAMVELEGKPFKTFASLREDWT------I-KNLYA-SPGPIQFSGP 545 (570)
Q Consensus 475 l~~~~~~w~~~~vPl~~~~~~e~~~-g~~~p~i~~~~V~l~~~~f~~~~~~r~~w~------~-~d~y~-~pGpiq~~g~ 545 (570)
. .+...|+.+...+.+.. -...++.-.--.++.+..|..+-..-+.-. . .+.|- .||++-.+|+
T Consensus 310 ~-------~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr~~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ii~~g~ 382 (666)
T KOG2440|consen 310 N-------GIVRLMGRESVHITLEATLASRDKDFCLAPELRGRKFTLNLNTYKILDVVDPRAEQDPFYGEIPGAIGLFGA 382 (666)
T ss_pred c-------eeEEehhHHHHHHHHHHHHhcCccceeehhhhcchhhhhhhhHHhhhhccccccccCCCCceeccceeeech
Confidence 2 24556666665544431 112233223334566666655433322221 1 12222 5788888887
Q ss_pred CC
Q 008310 546 TA 547 (570)
Q Consensus 546 ~~ 547 (570)
.+
T Consensus 383 ~~ 384 (666)
T KOG2440|consen 383 PA 384 (666)
T ss_pred hh
Confidence 65
No 30
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=87.99 E-value=1.2 Score=45.60 Aligned_cols=55 Identities=29% Similarity=0.315 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHcCC------CEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhH
Q 008310 170 PEQFKQAEETVKKLDL------DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTA 241 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~I------d~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA 241 (570)
++.-+.+.+..+++++ |.+|+|||||++-.|+.... ...++|+||-. . ++||-|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~---------G---~lGFL~~ 65 (246)
T PRK04761 5 PEAQAALEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR---------G---SVGFLMN 65 (246)
T ss_pred HHHHHHHHHHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC---------C---CCCcccC
Confidence 3444455555667777 99999999999988776532 34678999874 1 6888874
No 31
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=87.37 E-value=26 Score=33.76 Aligned_cols=103 Identities=20% Similarity=0.220 Sum_probs=63.8
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
+||+++.+...|-.+.++.|+-+.++.. +.++.-+ .+ . .+++
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~~--g~~l~~~--------------------------------~~---~-~~~~ 42 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKAA--GYQVLLA--------------------------------NS---Q-NDAE 42 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHc--CCeEEEE--------------------------------eC---C-CCHH
Confidence 5899999888899999999999887651 2111100 00 0 1335
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhH
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTA 241 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA 241 (570)
...+.++.+...++|++|+.+.+.+... ..+.+.+.+ +++|.+..+.+.. ... .++++|..
T Consensus 43 ~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~~~--ip~v~~~~~~~~~--~~~--~~v~~d~~ 103 (264)
T cd01537 43 KQLSALENLIARGVDGIIIAPSDLTAPT---IVKLARKAG--IPVVLVDRDIPDG--DRV--PSVGSDNE 103 (264)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCcchh---HHHHhhhcC--CCEEEeccCCCCC--ccc--ceEecCcH
Confidence 5666777777789999999988766544 223333334 5688776655541 111 36666554
No 32
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.92 E-value=1.1 Score=46.32 Aligned_cols=54 Identities=24% Similarity=0.278 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCC-----CEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHH
Q 008310 173 FKQAEETVKKLDL-----DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACK 243 (570)
Q Consensus 173 ~~~~~~~l~k~~I-----d~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k 243 (570)
.+++.+.++.+++ |.+|+||||||+-.|+.... ..+++|+||-. -++||-|..+
T Consensus 17 ~~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN~------------G~lGFL~~~~ 75 (259)
T PRK00561 17 LPKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGINT------------GHLGFYTSFN 75 (259)
T ss_pred HHHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEec------------CCCccccccC
Confidence 4445555555555 99999999999988776542 34688999872 2789988543
No 33
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=85.73 E-value=1.1 Score=47.80 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=42.4
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccC
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDG 225 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDN 225 (570)
.|.++-..+++.+.+.++|-+++.|||||.+.++.-. +-+++|+|||.=.-|
T Consensus 84 tTa~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av------~~~vPvLGipaGvk~ 135 (355)
T COG3199 84 TTAEDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV------GADVPVLGIPAGVKN 135 (355)
T ss_pred ccHHHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc------cCCCceEeeccccce
Confidence 4567888899999999999999999999987765332 558999999975444
No 34
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=84.69 E-value=38 Score=33.27 Aligned_cols=174 Identities=17% Similarity=0.179 Sum_probs=98.9
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChHH
Q 008310 93 IGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQ 172 (570)
Q Consensus 93 IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~ 172 (570)
|||+......|-...+..|+-+.++.+ +.++.-+. .+. .+.+.
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~--g~~~~~~~------------------------~~~-----------~d~~~ 43 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKEL--GYEVEIVF------------------------DAQ-----------NDPEE 43 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHH--TCEEEEEE------------------------EST-----------TTHHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHc--CCEEEEeC------------------------CCC-----------CCHHH
Confidence 789999999998888999999887764 33332110 011 14466
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCC-CCCCCCCCCCChhhHHHHHHHHHHH
Q 008310 173 FKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD-LKCKDVPISFGFDTACKTFSEVIGN 251 (570)
Q Consensus 173 ~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND-L~~~~ie~s~GFdTA~k~~se~I~n 251 (570)
....++.+...++|++++..-+.+... ..| +.+.+.| ++||. +|+| ........++|+|.. .....+...
T Consensus 44 q~~~i~~~i~~~~d~Iiv~~~~~~~~~-~~l-~~~~~~g--Ipvv~----~d~~~~~~~~~~~~v~~d~~-~~G~~~a~~ 114 (257)
T PF13407_consen 44 QIEQIEQAISQGVDGIIVSPVDPDSLA-PFL-EKAKAAG--IPVVT----VDSDEAPDSPRAAYVGTDNY-EAGKLAAEY 114 (257)
T ss_dssp HHHHHHHHHHTTESEEEEESSSTTTTH-HHH-HHHHHTT--SEEEE----ESSTHHTTSTSSEEEEE-HH-HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEecCCCHHHHH-HHH-HHHhhcC--ceEEE----EeccccccccceeeeeccHH-HHHHHHHHH
Confidence 778888899999999998888875433 333 4455556 46776 6777 444455578888744 333333333
Q ss_pred HHHHhhhcCCeeEEE-EecCCCCcHH---HHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHH
Q 008310 252 VMTDARSSGKYYHFI-RLMGRAASHI---TLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIIC 314 (570)
Q Consensus 252 i~~Da~S~~k~~~fI-evMGR~ag~l---Ale~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~ 314 (570)
+. +.......+.++ ...+-..... ++.-+|..+|++-+++|... .+.+..+..+.+.+.+.
T Consensus 115 l~-~~~~~~~~v~~~~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~l~ 179 (257)
T PF13407_consen 115 LA-EKLGAKGKVLILSGSPGNPNTQERLEGFRDALKEYPGVEIVDEYEY-TDWDPEDARQAIENLLQ 179 (257)
T ss_dssp HH-HHHTTTEEEEEEESSTTSHHHHHHHHHHHHHHHHCTTEEEEEEEEE-CTTSHHHHHHHHHHHHH
T ss_pred HH-HHhccCceEEeccCCCCchHHHHHHHHHHHHHhhcceeeeeeeeec-cCCCHHHHHHHHHHhhh
Confidence 33 333322223333 2222111111 12335556678988885432 22455555555555554
No 35
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=83.73 E-value=2.9 Score=44.78 Aligned_cols=57 Identities=25% Similarity=0.297 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC--------------CCCceEEEeeccccC
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSK--------------DMKTRVIGCPKTIDG 225 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~--------------g~~i~VIgVPKTIDN 225 (570)
+.++.+++.+.+++.+.|.+|-|||--+++.|..++-..... +-.+++|.||-|--.
T Consensus 63 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gt 133 (366)
T PF00465_consen 63 TLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGT 133 (366)
T ss_dssp BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccc
Confidence 568899999999999999999999999999999988776532 112789999976543
No 36
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=83.18 E-value=1.2 Score=46.35 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=30.7
Q ss_pred HHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeec
Q 008310 178 ETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 221 (570)
Q Consensus 178 ~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 221 (570)
......+.|.+|++|||||+..|+.... +.+++|+||+.
T Consensus 70 ~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin~ 108 (285)
T PF01513_consen 70 EEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGINT 108 (285)
T ss_dssp HHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEES
T ss_pred hhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeecC
Confidence 3345689999999999999999876643 35789999994
No 37
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=82.17 E-value=50 Score=32.63 Aligned_cols=88 Identities=15% Similarity=0.066 Sum_probs=55.7
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
+|||+++.-..|-...++.|+-++++....+..++- ..+. .+++
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~---------------------------------~~~~---~~~~ 44 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTV---------------------------------VSAD---YDLN 44 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEEE---------------------------------ccCC---CCHH
Confidence 489999888889999999999988765322222211 1111 1344
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
.....++.+...+.||+|+.+.+... ....+ +.+.+.+ ++||.+
T Consensus 45 ~~~~~i~~~~~~~~dgiIi~~~~~~~-~~~~i-~~~~~~~--ipvv~~ 88 (271)
T cd06321 45 KQVSQIDNFIAAKVDLILLNAVDSKG-IAPAV-KRAQAAG--IVVVAV 88 (271)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCChhH-hHHHH-HHHHHCC--CeEEEe
Confidence 55677888889999999998766532 12223 3344444 567766
No 38
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.89 E-value=3.2 Score=43.90 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=36.9
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHH--HHHHHHHHH
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACK--TFSEVIGNV 252 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k--~~se~I~ni 252 (570)
+.|.+|+||||||+-.|+.... ..+++|+||-. -++||-|... -+-+.+..+
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN~------------G~lGFLt~~~~~~~~~~l~~l 121 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTINT------------GHLGFLTEAYLNQLDEAIDQV 121 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEeC------------CCCcccccCCHHHHHHHHHHH
Confidence 6899999999999988776543 34688999952 2899998743 333444444
No 39
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.52 E-value=3.7 Score=43.04 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=37.6
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHH--HHHHHHHHHHH
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTAC--KTFSEVIGNVM 253 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~--k~~se~I~ni~ 253 (570)
+.|.+|+||||||+-.|+.... ..+++|+||-. -++||-|.. +-+-+.+.++.
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN~------------G~lGFLt~~~~~~~~~~l~~i~ 118 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIHA------------GHLGFLTDITVDEAEKFFQAFF 118 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEeC------------CCcccCCcCCHHHHHHHHHHHH
Confidence 5799999999999877766532 33678999863 288998874 34445555554
No 40
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.49 E-value=2.9 Score=43.33 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHc-------CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHH
Q 008310 171 EQFKQAEETVKKL-------DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACK 243 (570)
Q Consensus 171 e~~~~~~~~l~k~-------~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k 243 (570)
+-.+++.+.|+++ +.|.+|++|||||+-.|+..... .-.+++|+||.- -++||-|...
T Consensus 15 ~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~---~~~~iPilGIN~------------G~lGFL~~~~ 79 (265)
T PRK04885 15 RVASKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYEN---QLDKVRFVGVHT------------GHLGFYTDWR 79 (265)
T ss_pred HHHHHHHHHHHHcCCccCCcCCCEEEEECCcHHHHHHHHHhcc---cCCCCeEEEEeC------------CCceecccCC
Confidence 3345555555554 36899999999998887765431 113678999973 2789998643
Q ss_pred --HHHHHHHHHH
Q 008310 244 --TFSEVIGNVM 253 (570)
Q Consensus 244 --~~se~I~ni~ 253 (570)
-+-+.+.++.
T Consensus 80 ~~~~~~~l~~i~ 91 (265)
T PRK04885 80 PFEVDKLVIALA 91 (265)
T ss_pred HHHHHHHHHHHH
Confidence 3444555553
No 41
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=80.32 E-value=5 Score=42.49 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC--CCCceEEEeecc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSK--DMKTRVIGCPKT 222 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~--g~~i~VIgVPKT 222 (570)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-...+. .-.+++|.||-|
T Consensus 63 ~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 63 PIEVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 467889999999999999999999999999888776543321 224789999965
No 42
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.13 E-value=4.5 Score=39.03 Aligned_cols=95 Identities=25% Similarity=0.341 Sum_probs=50.2
Q ss_pred ccEEEEEecC-CCC--chhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCC--
Q 008310 90 SLKIGVVLSG-GQA--PGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGR-- 164 (570)
Q Consensus 90 ~~~IGIv~sG-G~a--PG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R-- 164 (570)
+++|||++|| |-- .-+|-++-.+..- ...|.+..-|---..-+ +-+-.||-+.+..-||- ++-|.|
T Consensus 1 mKkv~ViLSGCGV~DGaEIHEsVltllai---~r~GA~~~cFAP~~~Q~--hViNHlTGE~m~EtRNV----LvEsARIa 71 (217)
T COG3155 1 MKKVGVILSGCGVYDGAEIHESVLTLLAI---SRSGAQAVCFAPDKQQV--HVINHLTGEAMPETRNV----LVESARIA 71 (217)
T ss_pred CceeEEEeecCcccchHHHHHHHHHHHHH---HhcCceeEEecCCchhh--hhhhhccccccchhhhH----HHHHHHHh
Confidence 4799999999 433 3356665555432 22355554443111100 01223455555555553 333332
Q ss_pred -CCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHH
Q 008310 165 -DKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNA 200 (570)
Q Consensus 165 -~k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A 200 (570)
.++.. +...+...+|+|++-||.|...+-
T Consensus 72 RG~i~~-------l~~a~~e~~DALivPGGFGAAKNL 101 (217)
T COG3155 72 RGEIRP-------LAQADAEELDALIVPGGFGAAKNL 101 (217)
T ss_pred hccccc-------hhhcCHHhcceeeccCccchhhhh
Confidence 33321 233455679999999999976654
No 43
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=79.86 E-value=3.9 Score=45.98 Aligned_cols=53 Identities=19% Similarity=0.358 Sum_probs=37.5
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHH--HHHHHHHHHH
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACK--TFSEVIGNVM 253 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k--~~se~I~ni~ 253 (570)
++|.+|+||||||+-.|+.+.. +..++|+||. + -++||-|... -+-+.+..+.
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGIN------~------G~LGFLt~i~~~e~~~~Le~il 316 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPFS------M------GSLGFMTPFHSEQYRDCLDAIL 316 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe------C------CCcceecccCHHHHHHHHHHHH
Confidence 6899999999999988877643 3457899984 1 2899988652 3344444443
No 44
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=78.90 E-value=5.9 Score=42.70 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCC--------------CCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKD--------------MKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g--------------~~i~VIgVPKTI 223 (570)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.....+ -.+++|.||-|-
T Consensus 68 ~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 136 (374)
T cd08189 68 TIENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTA 136 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCC
Confidence 5678999999999999999999999999999887765443221 126788888543
No 45
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=78.88 E-value=5.9 Score=42.52 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC-------------CCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSK-------------DMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~-------------g~~i~VIgVPKTI 223 (570)
+.+++.++++.+++.+.|.+|-|||--.++.|..++-.+... .-.+++|.||-|-
T Consensus 65 ~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~ 132 (370)
T cd08551 65 TLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTA 132 (370)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCC
Confidence 568899999999999999999999999999988887654221 1146788888654
No 46
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=78.87 E-value=19 Score=38.74 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCchhHHHHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKL---DLDGLVVIGGDDSNTNACLLAENF 207 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~---~Id~LviIGGddS~t~A~~Lae~~ 207 (570)
+.+..+++.+.+++. +.|.+|-|||--+++.|..++-..
T Consensus 63 t~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~ 104 (347)
T cd08184 63 KTDQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNML 104 (347)
T ss_pred CHHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 567899999999988 999999999999999998876543
No 47
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.70 E-value=5.4 Score=41.92 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=39.5
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHH--HHHHHHHHHHH
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACK--TFSEVIGNVMT 254 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k--~~se~I~ni~~ 254 (570)
+.|.+|++|||||+-.|+.... ..+++|+||-. -++||-|... -+-+.+.++..
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~------------G~lGFLt~~~~~~~~~~l~~i~~ 119 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG-----NSNIPILGINT------------GRLGFLATVSKEEIEETIDELLN 119 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec------------CCCCcccccCHHHHHHHHHHHHc
Confidence 5799999999999887776542 23678999864 2789999864 45556666643
No 48
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.52 E-value=4.2 Score=41.82 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=35.3
Q ss_pred cCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHH--HHHHHHHH
Q 008310 183 LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKT--FSEVIGNV 252 (570)
Q Consensus 183 ~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~--~se~I~ni 252 (570)
.+.|.+|++|||||+-.|+... +++|+||-. -++||-|.... +-+++.++
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin~------------G~lGfl~~~~~~~~~~~l~~~ 91 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKV--------GTPLVGFKA------------GRLGFLSSYTLEEIDRFLEDL 91 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHc--------CCCEEEEeC------------CCCccccccCHHHHHHHHHHH
Confidence 3679999999999998876543 578999872 26899887543 23444444
No 49
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=77.90 E-value=5.5 Score=42.35 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCC
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 226 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 226 (570)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.. ++++|.||-|..++
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~-----~~p~i~IPTtatgs 114 (337)
T cd08177 62 PVEVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT-----GLPIIAIPTTLSGS 114 (337)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----cCCEEEEcCCchhh
Confidence 457899999999999999999999999999998887542 57899999775444
No 50
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=76.17 E-value=7.6 Score=42.38 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAEN 206 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~ 206 (570)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.
T Consensus 91 ~~~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~ 128 (395)
T PRK15454 91 CITDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALL 128 (395)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHH
Confidence 45779999999999999999999999999999777654
No 51
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=75.83 E-value=6.9 Score=41.69 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecccc
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTID 224 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTID 224 (570)
.+.+.++++.+.+++.+.|.+|-|||--.++.|..++-.+ .+++|.||-|.-
T Consensus 60 p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-----~~p~i~VPTT~g 111 (347)
T cd08172 60 CSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-----GVPVITVPTLAA 111 (347)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----CCCEEEecCccc
Confidence 4678899999999999999999999999999998887653 468999998763
No 52
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=75.57 E-value=8.2 Score=41.62 Aligned_cols=54 Identities=26% Similarity=0.258 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC-------------CCCceEEEeecc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSK-------------DMKTRVIGCPKT 222 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~-------------g~~i~VIgVPKT 222 (570)
+.+.+.++++.+++.+.|.+|-|||--.++.|..++-..... ...+++|.||-|
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 134 (376)
T cd08193 68 PEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTT 134 (376)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCC
Confidence 568899999999999999999999999999887776543211 124678888854
No 53
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=74.74 E-value=9 Score=41.49 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENF 207 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~ 207 (570)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-.+
T Consensus 69 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~ 107 (383)
T cd08186 69 TVDQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAILL 107 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHH
Confidence 568899999999999999999999999999887776543
No 54
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=74.62 E-value=7.7 Score=41.50 Aligned_cols=52 Identities=25% Similarity=0.248 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccC
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDG 225 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDN 225 (570)
+.+.++++.+.+++.+.|.+|-|||--.++.|..+| +. + .+++|.||-|.-.
T Consensus 72 t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA-~~--r--gip~I~IPTT~~t 123 (350)
T PRK00843 72 TMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAA-YR--L--GIPFISVPTAASH 123 (350)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHH-Hh--c--CCCEEEeCCCccC
Confidence 567899999999999999999999998888888887 32 2 4679999998643
No 55
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=74.59 E-value=8.7 Score=41.45 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAE 205 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae 205 (570)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-
T Consensus 66 ~~~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~ 102 (375)
T cd08179 66 SVETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWI 102 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHH
Confidence 5678999999999999999999999999999988764
No 56
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=74.49 E-value=7.8 Score=41.17 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCC
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDL 227 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL 227 (570)
+.+..+++.+.+++.+.|.+|-|||--.++.|..++ +.+ ++++|.||-|.-+|-
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a-~~~----~~p~i~iPTT~~t~s 116 (339)
T cd08173 63 TYEEVEKVESSARDIGADFVIGVGGGRVIDVAKVAA-YKL----GIPFISVPTAASHDG 116 (339)
T ss_pred CHHHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHH-Hhc----CCCEEEecCcccCCc
Confidence 567889999999999999999999999999888887 332 468999999886554
No 57
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=74.26 E-value=9.2 Score=41.06 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC-----------------CCCceEEEeecc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSK-----------------DMKTRVIGCPKT 222 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~-----------------g~~i~VIgVPKT 222 (570)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.+... ...+++|.||-|
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 132 (367)
T cd08182 62 DLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTT 132 (367)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCC
Confidence 457899999999999999999999999999988887543211 124678888865
No 58
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=74.17 E-value=9.4 Score=41.29 Aligned_cols=54 Identities=22% Similarity=0.193 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC---------------CCCceEEEeecc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSK---------------DMKTRVIGCPKT 222 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~---------------g~~i~VIgVPKT 222 (570)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-..... ...+++|.||-|
T Consensus 71 ~~~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 71 TITVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 467899999999999999999999999998887665432211 123678888865
No 59
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=74.02 E-value=8.6 Score=40.46 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccC
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDG 225 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDN 225 (570)
+.++.+++++.+++.+.|.+|-|||--.++.|..++-.+. + .+++|.||-|.-.
T Consensus 63 ~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~--~~p~i~iPTt~~t 116 (332)
T cd07766 63 TFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-R--GLPIIIVPTTAAT 116 (332)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-C--CCCEEEEeCCCch
Confidence 5688999999999999999999999999998888876543 2 4679999965433
No 60
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=73.27 E-value=11 Score=41.02 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAE 205 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae 205 (570)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~ 109 (383)
T PRK09860 73 TTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIAL 109 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHH
Confidence 5688999999999999999999999999999888764
No 61
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.16 E-value=4.1 Score=42.88 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=38.3
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHH--HHHHHHHHHH
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACK--TFSEVIGNVM 253 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k--~~se~I~ni~ 253 (570)
+.|.+|++|||||+-.|+.... ..+++|+||-. -++||-|... -+.+.+..+.
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN~------------G~lGFL~~~~~~~~~~~l~~i~ 122 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ------------GHLGFLTQIPREYMTDKLLPVL 122 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEec------------CCCeEeeccCHHHHHHHHHHHH
Confidence 6899999999999998877643 23678999873 2799998743 3444455543
No 62
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=72.79 E-value=11 Score=40.78 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAE 205 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae 205 (570)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-
T Consensus 70 ~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~ 106 (377)
T cd08176 70 TITNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGI 106 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHH
Confidence 4678999999999999999999999999999888764
No 63
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=72.57 E-value=10 Score=41.25 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=32.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLA 204 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~La 204 (570)
+.+..+++++.+++.+.|.+|-|||--+++.|..++
T Consensus 63 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 63 SLETVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 557889999999999999999999999999987776
No 64
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.30 E-value=8.7 Score=39.82 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=30.6
Q ss_pred CCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHH
Q 008310 185 LDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACK 243 (570)
Q Consensus 185 Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k 243 (570)
.|.+|++|||||+-.|+..... . -+++|+||.- + -++||-|...
T Consensus 40 ~D~vi~lGGDGT~L~a~~~~~~---~-~~~pilgIn~--~---------G~lGFL~~~~ 83 (264)
T PRK03501 40 ANIIVSIGGDGTFLQAVRKTGF---R-EDCLYAGIST--K---------DQLGFYCDFH 83 (264)
T ss_pred ccEEEEECCcHHHHHHHHHhcc---c-CCCeEEeEec--C---------CCCeEcccCC
Confidence 6899999999999887765421 1 1467888763 1 1889977643
No 65
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=72.14 E-value=10 Score=40.93 Aligned_cols=38 Identities=21% Similarity=0.159 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAEN 206 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~ 206 (570)
+.+..+++.+.+++.+.|.+|-|||--+++.|..++-.
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~ 105 (380)
T cd08185 68 TTTTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFM 105 (380)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence 46789999999999999999999999999998777653
No 66
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.13 E-value=3.2 Score=43.22 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=32.6
Q ss_pred cCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHH
Q 008310 183 LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACK 243 (570)
Q Consensus 183 ~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k 243 (570)
.+.|.+|++||||++-.|..+. ..+++|+|||. . +.||-|...
T Consensus 56 ~~~d~vi~iGGDGTlL~a~~~~------~~~~pi~gIn~---------G---~lGFl~~~~ 98 (277)
T PRK03708 56 MDVDFIIAIGGDGTILRIEHKT------KKDIPILGINM---------G---TLGFLTEVE 98 (277)
T ss_pred cCCCEEEEEeCcHHHHHHHHhc------CCCCeEEEEeC---------C---CCCccccCC
Confidence 3689999999999998877643 23678999994 1 567777654
No 67
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.98 E-value=4.6 Score=42.06 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=33.0
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHH
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACK 243 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k 243 (570)
+.|.+++||||||+-.|+.... ..+++|+||-. -++||-|...
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn~------------G~lGFL~~~~ 84 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGINR------------GNLGFLTDID 84 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEeC------------CCCcccccCC
Confidence 6899999999999988876542 23678999862 2789988643
No 68
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=71.92 E-value=1e+02 Score=32.70 Aligned_cols=166 Identities=11% Similarity=0.112 Sum_probs=93.3
Q ss_pred EEEecCCCCchh-hHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC-ChH
Q 008310 94 GVVLSGGQAPGG-HNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE-TPE 171 (570)
Q Consensus 94 GIv~sGG~aPG~-nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~-~~e 171 (570)
-|++|||+.=-. +.-+..+++++++. +..+.+.+ |.++.+.+- .-+|++.++.++..|=...++.--.... -.+
T Consensus 139 ~VilSGGDPl~~~~~~L~~ll~~l~~i-~~v~~iri--~Tr~~v~~p-~rit~ell~~L~~~g~~v~i~l~~~h~~el~~ 214 (321)
T TIGR03822 139 EVILTGGDPLVLSPRRLGDIMARLAAI-DHVKIVRF--HTRVPVADP-ARVTPALIAALKTSGKTVYVALHANHARELTA 214 (321)
T ss_pred EEEEeCCCcccCCHHHHHHHHHHHHhC-CCccEEEE--eCCCcccCh-hhcCHHHHHHHHHcCCcEEEEecCCChhhcCH
Confidence 588999987654 35788888888753 33333333 344443322 3467888887877762223443332221 125
Q ss_pred HHHHHHHHHHHcCCCEEE---Ee-cCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHH
Q 008310 172 QFKQAEETVKKLDLDGLV---VI-GGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSE 247 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~Lv---iI-GGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se 247 (570)
...++++.|++.++.-++ ++ |=|++......|.+.+.+.|+..-.+....-..+ + --|.+....+-+
T Consensus 215 ~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g----~-----~~f~~~~~~~~~ 285 (321)
T TIGR03822 215 EARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPG----T-----AHFRVTIEEGQA 285 (321)
T ss_pred HHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCC----c-----ccccCcHHHHHH
Confidence 677888999999987643 44 5566666777788877777765333333322222 1 123444555555
Q ss_pred HHHHHHHHhhhcCCeeEEEEecCCC
Q 008310 248 VIGNVMTDARSSGKYYHFIRLMGRA 272 (570)
Q Consensus 248 ~I~ni~~Da~S~~k~~~fIevMGR~ 272 (570)
++..+..-......--+++++.|..
T Consensus 286 i~~~l~~~~~g~~~p~~v~~~~~~~ 310 (321)
T TIGR03822 286 LVRALRGRISGLAQPTYVLDIPGGH 310 (321)
T ss_pred HHHHHHHhCCCCcceeEEEeCCCCC
Confidence 5555533222222223577887754
No 69
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=71.74 E-value=10 Score=40.33 Aligned_cols=52 Identities=19% Similarity=0.359 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~I---d~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+.++++++.+++.+. |.+|-|||--.++.|..+|-... + .+++|.||-|.
T Consensus 63 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~-~--~~p~i~VPTT~ 117 (344)
T TIGR01357 63 SLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATYM-R--GIRFIQVPTTL 117 (344)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHHc-c--CCCEEEecCch
Confidence 56789999999999998 89999999999988888774322 3 46799999886
No 70
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=71.68 E-value=8.4 Score=41.05 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.++..++.+.+++.+.|.+|-|||--+++.|..++-. ..+++|.||-|-
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTa 111 (351)
T cd08170 62 TRAEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIA 111 (351)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCcc
Confidence 45778999999999999999999999999999888753 247899999763
No 71
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=71.58 E-value=12 Score=40.08 Aligned_cols=54 Identities=26% Similarity=0.263 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhc------------CCCCceEEEeecc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRS------------KDMKTRVIGCPKT 222 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~------------~g~~i~VIgVPKT 222 (570)
+.+..+++.+.+++.+.|.+|-|||--+++.|..++-.... ..-.+++|.||-|
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 68 SLETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 56889999999999999999999999999998877643211 1123678888854
No 72
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.43 E-value=9.8 Score=40.03 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=38.5
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHH--HHHHHHHHHHH
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTAC--KTFSEVIGNVM 253 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~--k~~se~I~ni~ 253 (570)
+.|.+|++|||||+-.|+.... ..+++|+||.. -++||-|.. +-+.+++..+.
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~------------G~lGFl~~~~~~~~~~~l~~~~ 116 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR------------GRLGFLTDIRPDELEFKLAEVL 116 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC------------CcccccccCCHHHHHHHHHHHH
Confidence 6799999999999888765432 34678999985 278998864 34555666664
No 73
>PLN02929 NADH kinase
Probab=70.90 E-value=3.6 Score=43.46 Aligned_cols=54 Identities=26% Similarity=0.274 Sum_probs=34.5
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeec---cccCCC-CCCCCC--CCCChhhHHH
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK---TIDGDL-KCKDVP--ISFGFDTACK 243 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK---TIDNDL-~~~~ie--~s~GFdTA~k 243 (570)
+.|.+|++|||||+-.|+... ..+++|+||-. +.|.-- ..+.++ .++||-+++.
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~------~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~ 123 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFL------DDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAAT 123 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHc------CCCCcEEEEECCCcccccccccccccccccCccccccCC
Confidence 568999999999998887654 23578999853 222210 001111 2789988855
No 74
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=70.39 E-value=13 Score=40.14 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHH----------HHhc---CCCCceEEEeecc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAE----------NFRS---KDMKTRVIGCPKT 222 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae----------~~~~---~g~~i~VIgVPKT 222 (570)
+.+..+++++.+++.+.|.+|-|||--.++.|..++- ++.. ....+++|.||-|
T Consensus 65 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 65 TDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 4678999999999999999999999999998877762 2111 1224689999966
No 75
>PRK15138 aldehyde reductase; Provisional
Probab=70.24 E-value=13 Score=40.50 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAEN 206 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~ 206 (570)
+.+..+++.+.+++.+.|.+|-|||--+++.|..++-.
T Consensus 70 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~~ 107 (387)
T PRK15138 70 TYETLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAAA 107 (387)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHH
Confidence 46789999999999999999999999999998887643
No 76
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=69.71 E-value=13 Score=40.06 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAEN 206 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~ 206 (570)
+.+.+.++++.+++.+.|.+|-|||--.++.|..++-.
T Consensus 60 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~ 97 (374)
T cd08183 60 SVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAAL 97 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHH
Confidence 35788999999999999999999999999998777654
No 77
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.70 E-value=5.3 Score=42.31 Aligned_cols=53 Identities=25% Similarity=0.371 Sum_probs=38.5
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHH--HHHHHHHHHHH
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTAC--KTFSEVIGNVM 253 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~--k~~se~I~ni~ 253 (570)
+.|.+|++|||||+-.|+.... ..+++|+||.. -++||-|.. +-+-+.+..+.
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~------------G~lGFL~~~~~~~~~~~l~~i~ 126 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL------------GHVGFLAEAEAEDLDEAVERVV 126 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec------------CCCceeccCCHHHHHHHHHHHH
Confidence 6899999999999988877643 23578999984 278998865 33445555554
No 78
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=69.67 E-value=16 Score=33.00 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=57.9
Q ss_pred CCEEEEEeCCcccccCC-CEEE-CChhhhccccccCCceecccCCCCCC-ChHHHHHHHHHHHHcCCCEEEEecCchhHH
Q 008310 122 GSKLYGFRGGPAGIMKC-KFVE-LSSEFIYPYRNQGGFDMLCSGRDKIE-TPEQFKQAEETVKKLDLDGLVVIGGDDSNT 198 (570)
Q Consensus 122 ~~~v~Gf~~G~~GLl~~-~~~e-Lt~~~v~~~~n~GG~~~lGs~R~k~~-~~e~~~~~~~~l~k~~Id~LviIGGddS~t 198 (570)
+.+|++ |-.||-+. .++. +...++..|..-|-+ +|.|+-.-.. +++.+.+.++.+.+.++-||++--|..-..
T Consensus 11 ~~~lva---G~~gL~r~V~~v~v~e~~d~~~~l~~gEl-vlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~ 86 (123)
T PF07905_consen 11 DAKLVA---GENGLDRPVRWVHVMEAPDPSDWLRGGEL-VLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDE 86 (123)
T ss_pred CCEEec---CCccCCCcEEEEEEeecCCHHHhCCCCeE-EEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCcccc
Confidence 445554 44555332 1222 223467778666665 6666655443 456699999999999999999955522223
Q ss_pred HHHHHHHHHhcCCCCceEEEeec
Q 008310 199 NACLLAENFRSKDMKTRVIGCPK 221 (570)
Q Consensus 199 ~A~~Lae~~~~~g~~i~VIgVPK 221 (570)
--..+.+++.+.+ ++++.+|.
T Consensus 87 iP~~~i~~A~~~~--lPli~ip~ 107 (123)
T PF07905_consen 87 IPEEIIELADELG--LPLIEIPW 107 (123)
T ss_pred CCHHHHHHHHHcC--CCEEEeCC
Confidence 3344445554444 67999996
No 79
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.65 E-value=5.8 Score=41.65 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=33.2
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHH
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACK 243 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k 243 (570)
+.|.+|++|||||+-.|+.... ..+++|+||-. -++||-|...
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin~------------G~lGFl~~~~ 105 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA-----RYDIKVIGINR------------GNLGFLTDLD 105 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEEC------------CCCCcccccC
Confidence 6899999999999988776542 23578999863 2788888765
No 80
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=68.73 E-value=12 Score=39.99 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+..+++.+.+++.+.|.+|-|||--+++.|..++-.+ .+++|.||-|-
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~-----~~p~i~VPTt~ 112 (345)
T cd08171 63 TYENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKL-----GKPVFTFPTIA 112 (345)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHc-----CCCEEEecCcc
Confidence 567888999999999999999999999999998887643 46899999763
No 81
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=68.66 E-value=12 Score=39.79 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~I---d~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+.++++++.+++.++ |.+|-|||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 67 ~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~-r--gip~i~VPTT~ 121 (345)
T cd08195 67 SLETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATYM-R--GIDFIQIPTTL 121 (345)
T ss_pred CHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHHh-c--CCCeEEcchhH
Confidence 56889999999999999 99999999998888888875333 2 46899999876
No 82
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=66.99 E-value=17 Score=39.35 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLA 204 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~La 204 (570)
+.+...++++.+++.+.|.+|-|||--+++.|..++
T Consensus 72 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia 107 (382)
T PRK10624 72 TIEVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIG 107 (382)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHH
Confidence 457889999999999999999999999999987665
No 83
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=66.56 E-value=15 Score=39.51 Aligned_cols=52 Identities=23% Similarity=0.386 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~I---d~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+.++++++.+++.+. |.+|-|||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 74 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~-~--gip~i~IPTT~ 128 (358)
T PRK00002 74 SLETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATYM-R--GIRFIQVPTTL 128 (358)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHhc-C--CCCEEEcCchh
Confidence 56889999999999988 99999999998888887774322 2 46899999986
No 84
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=66.30 E-value=14 Score=39.84 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 222 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 222 (570)
+.+..+++++.+++.+.|.+|-|||--.++.|..++-. .++++|.||-|
T Consensus 69 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~-----~~~p~i~IPTt 117 (366)
T PRK09423 69 SDNEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY-----LGVPVVIVPTI 117 (366)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH-----cCCCEEEeCCc
Confidence 34678899999999999999999999989888888743 24789999976
No 85
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=65.68 E-value=17 Score=39.06 Aligned_cols=107 Identities=16% Similarity=0.133 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHH
Q 008310 169 TPEQFKQAEETVKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTF 245 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~I---d~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~ 245 (570)
+.+...++.+.+.+.+. |.+|.|||--+.+.|..+|-.+. +| ++.+.||.|.-- .++.++|--|+++..
T Consensus 58 ~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~~~-rg--i~~i~iPTTlla-----~vds~ig~k~~vn~~ 129 (346)
T cd08196 58 SLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASIYM-RG--VSWSFVPTTLLA-----QVDSCIGSKSSINVG 129 (346)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHHH-cC--CCeEEecccHHH-----hhhccccccceecCC
Confidence 56889999999999999 89999999888888888875443 35 478999987521 223455555555532
Q ss_pred HHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHH
Q 008310 246 SEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDII 313 (570)
Q Consensus 246 se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I 313 (570)
. .|. ..+--..|+.|++--+... ..+-.++..-++++|
T Consensus 130 ~-------------~Kn----------------~ig~f~~P~~viiD~~~l~-tlp~~~~~~G~aEii 167 (346)
T cd08196 130 P-------------YKN----------------LVGNFYPPREIYIDPPFLS-TLDEKEIYSGLGEAL 167 (346)
T ss_pred C-------------CCc----------------ccccCCCCCEEEEchHHhc-cCCHHHHHhhHHHHH
Confidence 2 111 1122347888887544432 234455666777766
No 86
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=65.41 E-value=19 Score=38.77 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENF 207 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~ 207 (570)
+.+...++++.+++.+.|.+|-|||--.++.|..++-..
T Consensus 66 ~~~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~ 104 (370)
T cd08192 66 TEAAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMA 104 (370)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 567899999999999999999999999898887776543
No 87
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=65.33 E-value=15 Score=39.17 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+...++.+.+++.+.|.+|-|||--.++.|..++.. ..+++|.||-|-
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~-----~~~p~i~VPTta 111 (349)
T cd08550 62 STEEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR-----LDKPIVIVPTIA 111 (349)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEeCCcc
Confidence 45778999999999999999999999999999888743 246899999763
No 88
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=65.31 E-value=47 Score=36.81 Aligned_cols=159 Identities=16% Similarity=0.184 Sum_probs=83.5
Q ss_pred CChhHHHhhCCcccCCCeeEEecCCcc-----ccccCCCCccEEEEEecCCCCchhhH-HHH-------HHHHH--HHHh
Q 008310 55 GDPEEIKKLFPKFYGQPSARLVECDPM-----ACTLMENKSLKIGVVLSGGQAPGGHN-VIA-------GIFDY--LQER 119 (570)
Q Consensus 55 ~~~~~i~~~fp~~~~~~~~~~~~~~~~-----~~~~~~~~~~~IGIv~sGG~aPG~nn-vI~-------gl~~~--l~~~ 119 (570)
+-.+.+..|...+.|.|+.+-.+-..- +...+.-..-+|++|+|||..|=+|- -|. |.++- +..
T Consensus 183 ~a~Rav~mllkkl~ge~f~te~pmP~fd~v~p~p~~kdL~~akIALVTsgGivPkgnPd~i~ss~A~~yg~Y~i~g~~~- 261 (431)
T TIGR01918 183 GSERAVDMLVKKLKGEEFQTEYPMPVFDRVEPAAAIKDLSKAKIAVVTSGGIVPKDNPDRIESSSASKYGMYDITGLDR- 261 (431)
T ss_pred cHHHHHHHHHHhccCCcccccCCCCCCCcCCCCccCCchhhCEEEEEecCCcccCCCCCcccccCCCcceeEeCCCccc-
Confidence 445667777777777766554432200 00112223459999999999997773 221 11110 000
Q ss_pred cCCCEEEEEeCCcccccC----CCEEECChh-h---------hc-cccccCCceecccCCCCCCChHHHHHHHHHHHHcC
Q 008310 120 TKGSKLYGFRGGPAGIMK----CKFVELSSE-F---------IY-PYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLD 184 (570)
Q Consensus 120 ~~~~~v~Gf~~G~~GLl~----~~~~eLt~~-~---------v~-~~~n~GG~~~lGs~R~k~~~~e~~~~~~~~l~k~~ 184 (570)
....++.-.++||+--.- +.++.|+.- + +. .|..+-|. ||.+... .+.-..+++.|++-+
T Consensus 262 l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD~LreLekEG~IG~L~~~fyst~G~---gt~~~~a--~~~g~eIa~~Lk~dg 336 (431)
T TIGR01918 262 LEGGVYETAHGGFDPAYANADPDRVVPVDVLRDYEKEGKIGELHEYFYSTVGN---GTTVAES--KQFAKEFVVELKQGG 336 (431)
T ss_pred cCccceEEeccccChHHHhcCCCeeeeHHHHHHHHHcCCcccccCeeEEcCCC---CchHHHH--HHHHHHHHHHHHHcC
Confidence 011122233444443221 113333320 0 11 11222221 2333221 244578899999999
Q ss_pred CCEEEEecCchhHH-HHHHHHHHHhcCCCCceEEEe
Q 008310 185 LDGLVVIGGDDSNT-NACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 185 Id~LviIGGddS~t-~A~~Lae~~~~~g~~i~VIgV 219 (570)
+|+.|....-|+-+ .++.++.++.+.|+++-.|+-
T Consensus 337 VDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~ 372 (431)
T TIGR01918 337 VDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCT 372 (431)
T ss_pred CCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEee
Confidence 99999999888754 467778888888876544443
No 89
>PRK07360 FO synthase subunit 2; Reviewed
Probab=64.56 E-value=1.2e+02 Score=32.88 Aligned_cols=189 Identities=13% Similarity=0.137 Sum_probs=95.9
Q ss_pred CCccEEEEEecCCCCchhh--HHHHHHHHHHHHhcCCCEEEEEeC-------CcccccCCCEEECChhhhccccccCCce
Q 008310 88 NKSLKIGVVLSGGQAPGGH--NVIAGIFDYLQERTKGSKLYGFRG-------GPAGIMKCKFVELSSEFIYPYRNQGGFD 158 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~n--nvI~gl~~~l~~~~~~~~v~Gf~~-------G~~GLl~~~~~eLt~~~v~~~~n~GG~~ 158 (570)
....+|.++ | |.-|-.. .-+..+++.+|+..++..+.++-. -..|+ ++.+.+..++..|=..
T Consensus 106 ~G~~~i~l~-~-G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~-------~~~e~l~~LkeAGld~ 176 (371)
T PRK07360 106 RGATEVCIQ-G-GLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGL-------SYEEVLKALKDAGLDS 176 (371)
T ss_pred CCCCEEEEc-c-CCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCC-------CHHHHHHHHHHcCCCc
Confidence 345677777 4 4444432 456778888877656666665410 01122 3344455555544322
Q ss_pred ecccCCC------------CCCChHHHHHHHHHHHHcCC--CEEEEecCchhHHHHHHHHHHHhcCCCCc--eEEEeecc
Q 008310 159 MLCSGRD------------KIETPEQFKQAEETVKKLDL--DGLVVIGGDDSNTNACLLAENFRSKDMKT--RVIGCPKT 222 (570)
Q Consensus 159 ~lGs~R~------------k~~~~e~~~~~~~~l~k~~I--d~LviIGGddS~t~A~~Lae~~~~~g~~i--~VIgVPKT 222 (570)
+.+++.. ...+.+.+-++++.++++++ ..=+++|=-.|..........+++.+.+. -...||-.
T Consensus 177 ~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~ 256 (371)
T PRK07360 177 MPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDHLLILREIQQETGGITEFVPLP 256 (371)
T ss_pred CCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEecc
Confidence 3344421 11255678899999999998 45555554456665555555555433221 01225543
Q ss_pred ccCCCCCCCCCC-------CCChhhHHHHHHHHHHHHHHHhhh--cCCeeEEEEecCCCCcHHHHHhhhhcCCcEE---E
Q 008310 223 IDGDLKCKDVPI-------SFGFDTACKTFSEVIGNVMTDARS--SGKYYHFIRLMGRAASHITLECALQTHPNIA---I 290 (570)
Q Consensus 223 IDNDL~~~~ie~-------s~GFdTA~k~~se~I~ni~~Da~S--~~k~~~fIevMGR~ag~lAle~aLat~pniv---l 290 (570)
+-+ ++|..+. +.+.+. ++++|- -.+..+-.- -.-+|. ++|- .....+|..|+|-+ +
T Consensus 257 f~~--~~Tpl~~~~~~~~~~~~~~~-lr~iAi--~Rl~lp~~~~~i~a~~~---~lg~----~~~~~~l~~Gan~~~~~~ 324 (371)
T PRK07360 257 FVH--ENAPLYERGRVKGGAPGLED-LLLYAV--SRIFLGNWIKNIQASWV---KLGL----KLAQVALNCGANDLGGTL 324 (371)
T ss_pred ccC--CCCccccccccCCCCCHHHH-HHHHHH--HHHhcCCCCCCeeccce---eeCH----HHHHHHHhcCCccCcCcC
Confidence 333 2333321 223333 555552 233333210 111221 2221 22356788899999 9
Q ss_pred ECCchhh
Q 008310 291 IGEEIAA 297 (570)
Q Consensus 291 IpEe~~~ 297 (570)
+||.+..
T Consensus 325 ~~~~v~~ 331 (371)
T PRK07360 325 MEEHITK 331 (371)
T ss_pred cccceec
Confidence 9988765
No 90
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=64.11 E-value=21 Score=38.35 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHHcC--CCEEEEecCchhHHHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLD--LDGLVVIGGDDSNTNACLLAEN 206 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~--Id~LviIGGddS~t~A~~Lae~ 206 (570)
+.+..+++.+.+++.+ .|.+|-|||--.++.|..++-.
T Consensus 63 t~~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~~ 102 (355)
T TIGR03405 63 DVAQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVG 102 (355)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHH
Confidence 4577889999999888 9999999999999988776544
No 91
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=63.89 E-value=21 Score=38.64 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC-------------CCCceEEEeecc
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSK-------------DMKTRVIGCPKT 222 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~-------------g~~i~VIgVPKT 222 (570)
.++..++++.+++.+.|.+|-|||--.++.|..++-..... +-.+++|.||-|
T Consensus 65 ~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 65 RSELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 45577778889999999999999999999998887544221 114678888843
No 92
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=63.77 E-value=56 Score=32.96 Aligned_cols=126 Identities=12% Similarity=0.145 Sum_probs=62.3
Q ss_pred cCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCC---CC-------CCChhhHHHHHHHHHHHHHHHhhhcCC
Q 008310 192 GGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDV---PI-------SFGFDTACKTFSEVIGNVMTDARSSGK 261 (570)
Q Consensus 192 GGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~i---e~-------s~GFdTA~k~~se~I~ni~~Da~S~~k 261 (570)
||.|--|.|..||-++.++|.++.|| |-|-+++-. +. ...++.....-...+......+....-
T Consensus 11 GGvGKTT~a~nLA~~la~~G~~Vlli------D~DpQ~s~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~y 84 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDGKRVALF------EADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQGF 84 (231)
T ss_pred CCccHHHHHHHHHHHHHhCCCcEEEE------eCCCCCCHHHHHHhhccccCCCccceecCCCHHHHHHHHHHHHhhCCC
Confidence 88998899999999998888765444 777654311 00 000000000000111222122222222
Q ss_pred eeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhc-chHHHHHHHHHHHHHHHHcCCCeEEEE
Q 008310 262 YYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKL-TLKNVTDYITDIICKRSEAGYNFGVVL 327 (570)
Q Consensus 262 ~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~-tL~~iv~~i~d~I~~R~~~gk~~gvIl 327 (570)
-|.||-+-|.. |.++.. +|+ .+|+||||=.+....+ ...+.++.+.+. .++...+..+.+++
T Consensus 85 D~iiID~pp~~-~~~~~~-al~-~aD~vliP~~ps~~d~~~~~~~~~~v~~~-~~~~~~~l~~~iv~ 147 (231)
T PRK13849 85 DYALADTHGGS-SELNNT-IIA-SSNLLLIPTMLTPLDIDEALSTYRYVIEL-LLSENLAIPTAILR 147 (231)
T ss_pred CEEEEeCCCCc-cHHHHH-HHH-HCCEEEEeccCcHHHHHHHHHHHHHHHHH-HHHhCCCCCeEEEE
Confidence 35677877755 566554 333 5699999976643322 122223333332 22334466676444
No 93
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=63.39 E-value=20 Score=38.58 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHcCC----CEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDL----DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~I----d~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+..+++.+.+.+.+. |.+|-|||--.++.|..+|-.+. +| +++|.||-|.
T Consensus 69 s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~~-rg--~p~i~VPTT~ 124 (354)
T cd08199 69 TMDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLYR-RG--TPYVRIPTTL 124 (354)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhc-CC--CCEEEEcCcc
Confidence 56889999999999999 99999999988888888875433 24 6899999986
No 94
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=63.06 E-value=1.6e+02 Score=28.94 Aligned_cols=86 Identities=14% Similarity=0.163 Sum_probs=51.1
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
+|||+...-.-|=...++.|+-++++.. +.++.-+ .+. .+++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~---------------------------------~~~---~~~~ 42 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEAL--GGDLRVY---------------------------------DAG---GDDA 42 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHc--CCEEEEE---------------------------------CCC---CCHH
Confidence 5888887777777788888888776542 2332210 000 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
.....++.+...++||+|+..++.... ...+ +.+.+.| ++||.+
T Consensus 43 ~~~~~l~~~~~~~vdgii~~~~~~~~~-~~~i-~~~~~~~--ipvV~~ 86 (273)
T cd06305 43 KQADQIDQAIAQKVDAIIIQHGRAEVL-KPWV-KRALDAG--IPVVAF 86 (273)
T ss_pred HHHHHHHHHHHcCCCEEEEecCChhhh-HHHH-HHHHHcC--CCEEEe
Confidence 445666777778999999998764322 2223 2334445 456655
No 95
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=62.04 E-value=93 Score=30.35 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=52.3
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChHH
Q 008310 93 IGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQ 172 (570)
Q Consensus 93 IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~ 172 (570)
||+|..+-..|....++.|+-++++.. +..++-+. +. .+.+.
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~---------------------------------~~---~~~~~ 43 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAA--GYQLLLGN---------------------------------TG---YSPER 43 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHc--CCEEEEec---------------------------------CC---CCchh
Confidence 788998888888888999998876542 33332111 00 01233
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 173 FKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 173 ~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
..++++.+...++||+++.+-+.+.. .+ +.+.+.+ ++||.+
T Consensus 44 ~~~~~~~l~~~~vdgiii~~~~~~~~---~~-~~~~~~~--ipvv~~ 84 (268)
T cd01575 44 EEELLRTLLSRRPAGLILTGLEHTER---TR-QLLRAAG--IPVVEI 84 (268)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHH---HH-HHHHhcC--CCEEEE
Confidence 45677778889999999998775422 12 2223334 567776
No 96
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=61.85 E-value=23 Score=38.30 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAE 205 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae 205 (570)
+.+..+++++.++..+.|++|-|||--.++.|..++-
T Consensus 71 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~ 107 (382)
T cd08187 71 RLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAA 107 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHh
Confidence 4578899999999999999999999888888877654
No 97
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=61.73 E-value=23 Score=38.93 Aligned_cols=36 Identities=33% Similarity=0.375 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLA 204 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~La 204 (570)
+.+...++++.+++.+.|.+|-|||--.++.|..++
T Consensus 65 ~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia 100 (414)
T cd08190 65 TDESFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAAN 100 (414)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 457899999999999999999999999998887765
No 98
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=61.39 E-value=9.7 Score=39.96 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=36.4
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHH--HHHHHHHHH
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACK--TFSEVIGNV 252 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k--~~se~I~ni 252 (570)
+.|.+|++||||++-.|..... +.+++++||-. -.+||-|... -+-+.+..+
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn~------------G~lGFL~~~~~~~~~~~l~~~ 116 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGINH------------GRLGFITDIPLDDMQETLPPM 116 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC------------CCccccccCCHHHHHHHHHHH
Confidence 5799999999999988876532 34678999872 2789988633 233444444
No 99
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=60.85 E-value=24 Score=38.56 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENF 207 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~ 207 (570)
+.+..+++++.+++.+.|.+|-+||--+++.|..++=..
T Consensus 71 ~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~ 109 (377)
T COG1454 71 TIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLA 109 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHh
Confidence 457889999999999999999999988888887665443
No 100
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=60.70 E-value=26 Score=37.81 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAE 205 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae 205 (570)
+.+...++++.+++.+.|.+|-|||--.++.|..++-
T Consensus 70 ~~~~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~ 106 (377)
T cd08188 70 RDEEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGI 106 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHH
Confidence 4577888999999999999999999999999865543
No 101
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=59.31 E-value=23 Score=37.56 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCC
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 226 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 226 (570)
+.+.++++++.+++ +.|.+|-|||--.++.|..+| +++ .+++|.||-|.-+|
T Consensus 66 ~~~~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~~~----gip~I~VPTT~~~~ 117 (332)
T cd08549 66 DEYELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-FKV----GKPFISVPTAPSMD 117 (332)
T ss_pred CHHHHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-HHc----CCCEEEeCCCcccC
Confidence 56788888888888 999999999998888888887 432 46899999998554
No 102
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=58.80 E-value=1.6e+02 Score=27.70 Aligned_cols=119 Identities=21% Similarity=0.208 Sum_probs=63.4
Q ss_pred EEEEEecCC-CCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCCh
Q 008310 92 KIGVVLSGG-QAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETP 170 (570)
Q Consensus 92 ~IGIv~sGG-~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~ 170 (570)
+||+++... ..+-...++.|+.++++....+.+ ++ +..+. .++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---------------~~-----------------~~~~~----~~~ 44 (269)
T cd01391 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLE---------------VI-----------------LADSQ----SDP 44 (269)
T ss_pred CceEEeecCCCcHHHHHHHHHHHHHHHHhCCceE---------------EE-----------------EecCC----CCH
Confidence 588888765 677788888888877654300000 00 11011 123
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCC-CCCCCCChhhHHHHHHHHH
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCK-DVPISFGFDTACKTFSEVI 249 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~-~ie~s~GFdTA~k~~se~I 249 (570)
++..++++.+...++|++++.+.+..... +.+.+.+.+ +++|.+=.+.+...... ..-..+.+..+.+..++.+
T Consensus 45 ~~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~~~~~~--ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 119 (269)
T cd01391 45 ERALEALRDLIQQGVDGIIGPPSSSSALA---VVELAAAAG--IPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYL 119 (269)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCHHHHH---HHHHHHHcC--CcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHH
Confidence 45566666677779999998877765432 344444444 56776644433211111 1112444455555555544
Q ss_pred HH
Q 008310 250 GN 251 (570)
Q Consensus 250 ~n 251 (570)
..
T Consensus 120 ~~ 121 (269)
T cd01391 120 AE 121 (269)
T ss_pred HH
Confidence 33
No 103
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=58.30 E-value=28 Score=37.23 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHHcC---CCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLD---LDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~---Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+.++++.+.+.+++ .|.+|-|||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 65 ~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~-r--gip~i~VPTTl 119 (344)
T cd08169 65 TFETVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTLF-R--GIAFIRVPTTL 119 (344)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHhc-c--CCcEEEecCCc
Confidence 5678899999999887 899999999988888887776432 3 46899999984
No 104
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=57.40 E-value=25 Score=39.69 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=74.6
Q ss_pred CEEEEEeCCcccccCCCEEECChhhhcccccc--CCceecccCCCCCCChHHHHHHHHHHHHcCC---CEEEEecCchhH
Q 008310 123 SKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQ--GGFDMLCSGRDKIETPEQFKQAEETVKKLDL---DGLVVIGGDDSN 197 (570)
Q Consensus 123 ~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~--GG~~~lGs~R~k~~~~e~~~~~~~~l~k~~I---d~LviIGGddS~ 197 (570)
..|+-..++..+. .+..+.++++.+..+... .-..++=..-..-++-+.++++.+.+.+.++ |.+|.+||--..
T Consensus 172 ~~v~~~~~~~~~~-~~~~~ii~d~~v~~ly~~~l~~~~~~~~~ge~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~ 250 (488)
T PRK13951 172 HLVKIILGGFKRV-RNEELVFTTERVEKIYGRYLPENRLLFPDGEEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALT 250 (488)
T ss_pred eeEEEeccccccC-CCeEEEEECCcHHHHHHHhhcccEEEecCCCCCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHH
Confidence 3444334444444 357677787766542211 0111111111223467889999999999999 999999998888
Q ss_pred HHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHH
Q 008310 198 TNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKT 244 (570)
Q Consensus 198 t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~ 244 (570)
+.|-..|-.+.+ | ++.|.||-|+-- .++.|+|--|++++
T Consensus 251 D~agf~A~~y~R-G--i~~i~vPTTlla-----~vDssiggK~~vn~ 289 (488)
T PRK13951 251 DFTGFVASTFKR-G--VGLSFYPTTLLA-----QVDASVGGKNAIDF 289 (488)
T ss_pred HHHHHHHHHHhc-C--CCeEecCccHHH-----HHhcCCCCCeeeeC
Confidence 888888776553 5 679999999854 44568888787765
No 105
>PLN02727 NAD kinase
Probab=57.10 E-value=12 Score=45.15 Aligned_cols=53 Identities=25% Similarity=0.284 Sum_probs=38.7
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHH--HHHHHHHHHH
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACK--TFSEVIGNVM 253 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k--~~se~I~ni~ 253 (570)
++|.+|+||||||+-.|+.+.. +..++|+||-. -++||-|-.. -+.+.+..+.
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGINl------------GrLGFLTdi~~ee~~~~L~~Il 797 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR-----GAVPPVVSFNL------------GSLGFLTSHYFEDFRQDLRQVI 797 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEeC------------CCccccccCCHHHHHHHHHHHH
Confidence 6899999999999988877643 34578999863 2889988643 3445555554
No 106
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=56.94 E-value=23 Score=37.67 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=41.0
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 222 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 222 (570)
.+.+...++++.+++ +.|.+|-|||--.++.|..++.. . .+++|.||-|
T Consensus 65 pt~~~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~---~--~~p~i~IPTT 113 (348)
T cd08175 65 ADEKAVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK---T--GIPYISVPTA 113 (348)
T ss_pred CCHHHHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh---c--CCCEEEecCc
Confidence 467888888888888 99999999999889888888742 2 4689999988
No 107
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=56.82 E-value=57 Score=34.96 Aligned_cols=47 Identities=28% Similarity=0.393 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEE
Q 008310 169 TPEQFKQAEETVKKL--DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVI 217 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~--~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VI 217 (570)
+++++.++.+.++++ +.||+||.=|.|||.-.+.+-.+..+.+ .+||
T Consensus 60 tp~~w~~la~~I~~~~~~~dG~VVtHGTDTme~TA~~Ls~~l~~~--kPVV 108 (336)
T TIGR00519 60 KPEYWVEIAEAVKKEYDDYDGFVITHGTDTMAYTAAALSFMLETP--KPVV 108 (336)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEccCCchHHHHHHHHHHHcCCC--CCEE
Confidence 677777777777654 7999999999999988776656555443 3444
No 108
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=56.61 E-value=31 Score=37.20 Aligned_cols=52 Identities=25% Similarity=0.291 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHcCCC---EEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDLD---GLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id---~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+..+++.+.+.+.++| .+|-|||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 66 ~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~~-r--gip~I~IPTTl 120 (355)
T cd08197 66 TLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALLF-R--GIRLVHIPTTL 120 (355)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHhc-c--CCCEEEecCcc
Confidence 567899999999999999 9999999888888877765332 2 36799999874
No 109
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=56.44 E-value=2e+02 Score=28.27 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCch
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDD 195 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGdd 195 (570)
++....++.+...++|++++.+.+.
T Consensus 43 ~~~~~~i~~~~~~~vdgiii~~~~~ 67 (270)
T cd06308 43 SKQVADIENFIRQGVDLLIISPNEA 67 (270)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCch
Confidence 3445566777889999999987664
No 110
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=56.35 E-value=3.1e+02 Score=30.58 Aligned_cols=140 Identities=17% Similarity=0.280 Sum_probs=94.2
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCCh
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETP 170 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~ 170 (570)
..+||.-. ||-=-+||.+.++..+. .+.-| .+|-|...|+.+ ||. |+ .|+
T Consensus 15 ~~~gI~sV---Csahp~VieAAl~~a~~--~~~pv--------------LiEAT~NQVnq~---GGY----TG----mtP 64 (426)
T PRK15458 15 KTNGIYAV---CSAHPLVLEAAIRYALA--NDSPL--------------LIEATSNQVDQF---GGY----TG----MTP 64 (426)
T ss_pred CCceEEEe---cCCCHHHHHHHHHHHhh--cCCcE--------------EEEecccccccc---CCc----CC----CCH
Confidence 35566654 34445889988776443 33333 478888888888 884 22 267
Q ss_pred HHHHH-HHHHHHHcCCCE-EEEecCch-------------hHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCC
Q 008310 171 EQFKQ-AEETVKKLDLDG-LVVIGGDD-------------SNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPIS 235 (570)
Q Consensus 171 e~~~~-~~~~l~k~~Id~-LviIGGdd-------------S~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s 235 (570)
.+|.. +.+..++.+++. .+|+|||. .|..|..|-+.+.+.|+. -|++=.|++ ..++.+ .
T Consensus 65 ~dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--cagdp~--p 138 (426)
T PRK15458 65 ADFRGFVCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFK--KIHLDCSMS--CADDPI--P 138 (426)
T ss_pred HHHHHHHHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--CCCCCC--C
Confidence 77755 456678899998 99999973 577777777777778875 788877777 554443 7
Q ss_pred CChhhHHHHHHHHHHHHHHHhh---hcCCeeEEE
Q 008310 236 FGFDTACKTFSEVIGNVMTDAR---SSGKYYHFI 266 (570)
Q Consensus 236 ~GFdTA~k~~se~I~ni~~Da~---S~~k~~~fI 266 (570)
+.-++.++..++++.---..+. ....-+|+|
T Consensus 139 L~d~~vA~Raa~L~~~aE~~a~~~~~~~~~vYvI 172 (426)
T PRK15458 139 LTDEIVAERAARLAKIAEETCREHFGESDLVYVI 172 (426)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 7779999999998874433331 222345666
No 111
>PLN02834 3-dehydroquinate synthase
Probab=56.34 E-value=30 Score=38.43 Aligned_cols=53 Identities=17% Similarity=0.314 Sum_probs=42.9
Q ss_pred CChHHHHHHHHHHHHcCCC---EEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 168 ETPEQFKQAEETVKKLDLD---GLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id---~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
.+.+.+.++++.+.+.++| .+|-|||--.++.|..+|-.+. +| +++|.||-|.
T Consensus 144 ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y~-rg--iplI~VPTTl 199 (433)
T PLN02834 144 KDMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASYQ-RG--VNFVQIPTTV 199 (433)
T ss_pred CCHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHhc-CC--CCEEEECCcC
Confidence 3568899999999999998 9999999988888877764332 34 6899999884
No 112
>PRK11914 diacylglycerol kinase; Reviewed
Probab=55.86 E-value=34 Score=35.56 Aligned_cols=60 Identities=23% Similarity=0.268 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
.+..+.++.+.+.+.|.+|++|||||...+. ..+. +.++++--+|.==-||+. .++|..+
T Consensus 51 ~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv---~~l~--~~~~~lgiiP~GT~NdfA-----r~lg~~~ 110 (306)
T PRK11914 51 HDARHLVAAALAKGTDALVVVGGDGVISNAL---QVLA--GTDIPLGIIPAGTGNDHA-----REFGIPT 110 (306)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHHHh---HHhc--cCCCcEEEEeCCCcchhH-----HHcCCCC
Confidence 4455556556677889999999999987654 2232 335667778987788887 3667653
No 113
>PRK06186 hypothetical protein; Validated
Probab=55.22 E-value=13 Score=37.75 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=43.2
Q ss_pred CCCEEEEecCchh--HHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhcC
Q 008310 184 DLDGLVVIGGDDS--NTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSG 260 (570)
Q Consensus 184 ~Id~LviIGGddS--~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ni~~Da~S~~ 260 (570)
+.||++|.||.|. ..+.-.+++|++++++ ++.| .|.|+..|+=-++.-+-.+ .||.|..
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~~i--P~LG---------------IClGmQ~avIe~arnv~g~-~dA~s~E 113 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFARENGI--PFLG---------------TCGGFQHALLEYARNVLGW-ADAAHAE 113 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHcCC--CeEe---------------echhhHHHHHHHHhhhcCC-cCCCcCC
Confidence 6799999999987 4456666788777663 4666 3999999877666655444 6888853
No 114
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=54.65 E-value=27 Score=36.65 Aligned_cols=52 Identities=27% Similarity=0.406 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecccc
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTID 224 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTID 224 (570)
.+++.+++.|. ..+|.++||||-.| .|..+|+|-+++.+.++-.|-=|.=|+
T Consensus 197 ~~RQ~a~~~La-~~vD~miVIGg~~S-sNT~kL~eia~~~~~~t~~Ie~~~el~ 248 (281)
T PF02401_consen 197 QNRQEAARELA-KEVDAMIVIGGKNS-SNTRKLAEIAKEHGKPTYHIETADELD 248 (281)
T ss_dssp HHHHHHHHHHH-CCSSEEEEES-TT--HHHHHHHHHHHHCTTCEEEESSGGG--
T ss_pred HHHHHHHHHHH-hhCCEEEEecCCCC-ccHHHHHHHHHHhCCCEEEeCCccccC
Confidence 44555666654 47999999999999 677899999988876655555455443
No 115
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=54.49 E-value=30 Score=37.86 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHcCCC---EEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 008310 170 PEQFKQAEETVKKLDLD---GLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 222 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id---~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 222 (570)
++...++.+.+.+.+.| .+|-|||--+.+.|..+|-. ..+| ++.|.||-|
T Consensus 94 ~~~v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~-~~rg--ip~I~IPTT 146 (389)
T PRK06203 94 PALVEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAAT-AHRG--VRLIRIPTT 146 (389)
T ss_pred HHHHHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHH-hcCC--CCEEEEcCC
Confidence 36789999999999998 99999998888888777643 2234 689999999
No 116
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.64 E-value=14 Score=42.32 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=33.1
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHH
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACK 243 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k 243 (570)
++|.+|++|||||+-.|+.... ..+++|+||-. -++||-|...
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin~------------G~lGFL~~~~ 390 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICINM------------GTVGFLTEFS 390 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC------------CCCCcCcccC
Confidence 4689999999999988876532 34678999863 2899988753
No 117
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=53.39 E-value=29 Score=37.80 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHcCCC---EEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 008310 170 PEQFKQAEETVKKLDLD---GLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 222 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id---~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 222 (570)
.+.+.++.+.+.+.+.| .+|-+||--..+.|..+|-.+ .+| ++.|.||-|
T Consensus 82 ~~~v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~~-~rG--ip~I~IPTT 134 (369)
T cd08198 82 PDLVEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAATA-HRG--VRLIRIPTT 134 (369)
T ss_pred HHHHHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCC
Confidence 36788999999999998 999999988888887776642 334 779999988
No 118
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=51.78 E-value=1.3e+02 Score=34.67 Aligned_cols=86 Identities=22% Similarity=0.279 Sum_probs=60.0
Q ss_pred HcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhcCC
Q 008310 182 KLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGK 261 (570)
Q Consensus 182 k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ni~~Da~S~~k 261 (570)
-.-||+++|-+|--|...|..|-+.+...|++ -|.-=|.||| .+ ..+-+| .++.....
T Consensus 121 G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~-yv~fKPGtIe-------------------qI-~svi~I-Aka~P~~p 178 (717)
T COG4981 121 GAPIDGVVISAGIPSLEEAVELIEELGDDGFP-YVAFKPGTIE-------------------QI-RSVIRI-AKANPTFP 178 (717)
T ss_pred CCCcceEEEecCCCcHHHHHHHHHHHhhcCce-eEEecCCcHH-------------------HH-HHHHHH-HhcCCCCc
Confidence 35699999999999999999999988766754 3444566554 11 122234 24544433
Q ss_pred eeEEEEecCCCCc-H----------HHHHhhhhcCCcEEEE
Q 008310 262 YYHFIRLMGRAAS-H----------ITLECALQTHPNIAII 291 (570)
Q Consensus 262 ~~~fIevMGR~ag-~----------lAle~aLat~pnivlI 291 (570)
.++.+-|..|| | ||..+.|..++|++++
T Consensus 179 --Iilq~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~ 217 (717)
T COG4981 179 --IILQWEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLC 217 (717)
T ss_pred --eEEEEecCccCCccchhhcccHHHHHHHHHhcCCCEEEE
Confidence 46776665554 4 7888899999999997
No 119
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=51.54 E-value=17 Score=32.27 Aligned_cols=93 Identities=24% Similarity=0.305 Sum_probs=57.8
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCCh
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETP 170 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~ 170 (570)
+||.||=||| ==|+..+.+. +.....+||-+.+ .||+.-++.+. .+ +.
T Consensus 1 MkVLviGsGg---REHAia~~l~----~s~~v~~v~~aPG-----------------------N~G~~~~~~~~-~~-~~ 48 (100)
T PF02844_consen 1 MKVLVIGSGG---REHAIAWKLS----QSPSVEEVYVAPG-----------------------NPGTAELGKNV-PI-DI 48 (100)
T ss_dssp EEEEEEESSH---HHHHHHHHHT----TCTTEEEEEEEE-------------------------TTGGGTSEEE--S--T
T ss_pred CEEEEECCCH---HHHHHHHHHh----cCCCCCEEEEeCC-----------------------CHHHHhhceec-CC-CC
Confidence 4777777774 3466666553 3334557776653 13443443332 12 55
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEee
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 220 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 220 (570)
.+.+.+++.|++++|| |||||-..-+.. =|+++|++.|+ +|+|=.
T Consensus 49 ~d~~~l~~~a~~~~id-lvvvGPE~pL~~--Gl~D~l~~~gi--~vfGP~ 93 (100)
T PF02844_consen 49 TDPEELADFAKENKID-LVVVGPEAPLVA--GLADALRAAGI--PVFGPS 93 (100)
T ss_dssp T-HHHHHHHHHHTTES-EEEESSHHHHHT--THHHHHHHTT---CEES--
T ss_pred CCHHHHHHHHHHcCCC-EEEECChHHHHH--HHHHHHHHCCC--cEECcC
Confidence 7789999999999999 678898887654 47888888774 577643
No 120
>PRK13054 lipid kinase; Reviewed
Probab=51.53 E-value=32 Score=35.76 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHH-HHHHHHhcCCCCceEEEeeccccCCCC
Q 008310 174 KQAEETVKKLDLDGLVVIGGDDSNTNAC-LLAENFRSKDMKTRVIGCPKTIDGDLK 228 (570)
Q Consensus 174 ~~~~~~l~k~~Id~LviIGGddS~t~A~-~Lae~~~~~g~~i~VIgVPKTIDNDL~ 228 (570)
...++.+...+.|.+|++|||||...+. .|.+. ..+.++++--+|.==-||+.
T Consensus 46 ~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~--~~~~~~~lgiiP~GTgNdfa 99 (300)
T PRK13054 46 ARYVEEALALGVATVIAGGGDGTINEVATALAQL--EGDARPALGILPLGTANDFA 99 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh--ccCCCCcEEEEeCCcHhHHH
Confidence 3444444456789999999999977754 33221 11334667778987788886
No 121
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=51.41 E-value=37 Score=35.38 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=42.4
Q ss_pred cCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 008310 183 LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARS 258 (570)
Q Consensus 183 ~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ni~~Da~S 258 (570)
...+.++++||||++-.|+.... ...++|+||=. . ++||-|-.. .+.+..+..+...
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgin~---------G---~lGFLt~~~--~~~~~~~~~~~~~ 110 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGINL---------G---HLGFLTDFE--PDELEKALDALLE 110 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc-----cCCCCEEEEeC---------C---CcccccccC--HHHHHHHHHHHhc
Confidence 67899999999999998877653 23478999842 2 899998887 5556666555555
No 122
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=50.99 E-value=87 Score=32.85 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=60.2
Q ss_pred CCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCC
Q 008310 87 ENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDK 166 (570)
Q Consensus 87 ~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k 166 (570)
+..|++||||+| -.+.|.+-++.-+-+ .+|..+++-|.= .-||=
T Consensus 11 P~~p~~I~vITs-~~gAa~~D~~~~~~~----r~~~~~~~~~p~---------------------~vQG~---------- 54 (319)
T PF02601_consen 11 PKFPKRIAVITS-PTGAAIQDFLRTLKR----RNPIVEIILYPA---------------------SVQGE---------- 54 (319)
T ss_pred CCCCCEEEEEeC-CchHHHHHHHHHHHH----hCCCcEEEEEec---------------------ccccc----------
Confidence 455789999998 566677777766543 456555553321 11221
Q ss_pred CCChHHHHHHHHHHHHcC----CCEEEEecCchhHHHHHHHHHHHhc---CCCCceEEE
Q 008310 167 IETPEQFKQAEETVKKLD----LDGLVVIGGDDSNTNACLLAENFRS---KDMKTRVIG 218 (570)
Q Consensus 167 ~~~~e~~~~~~~~l~k~~----Id~LviIGGddS~t~A~~Lae~~~~---~g~~i~VIg 218 (570)
..++++-++++.+.+.+ +|.+||+=|-||...-..+.++-.. ..++++||.
T Consensus 55 -~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~Pvis 112 (319)
T PF02601_consen 55 -GAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVIS 112 (319)
T ss_pred -chHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEE
Confidence 13566777788887765 9999999999998776554443321 245666763
No 123
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=49.53 E-value=33 Score=30.88 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=32.3
Q ss_pred CCEEEEecCchhHHHHHHHHHHHhcCCC--CceEEEeeccccCCCCCCCCCCCCChhhHHHH
Q 008310 185 LDGLVVIGGDDSNTNACLLAENFRSKDM--KTRVIGCPKTIDGDLKCKDVPISFGFDTACKT 244 (570)
Q Consensus 185 Id~LviIGGddS~t~A~~Lae~~~~~g~--~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~ 244 (570)
.|.+|++|||||...+. ..+.+.+. ++++.-+|.==-||+. .++|+.+-...
T Consensus 55 ~~~ivv~GGDGTl~~vv---~~l~~~~~~~~~~l~iiP~GT~N~~a-----r~lg~~~~~~~ 108 (130)
T PF00781_consen 55 PDVIVVVGGDGTLNEVV---NGLMGSDREDKPPLGIIPAGTGNDFA-----RSLGIPSDPEA 108 (130)
T ss_dssp -SEEEEEESHHHHHHHH---HHHCTSTSSS--EEEEEE-SSS-HHH-----HHTT--SSHHH
T ss_pred ccEEEEEcCccHHHHHH---HHHhhcCCCccceEEEecCCChhHHH-----HHcCCCCCcHH
Confidence 48999999999977653 33333333 4588889987788876 37777766555
No 124
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=49.48 E-value=36 Score=36.98 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCC
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKC 229 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~ 229 (570)
+.+..+++.+.+...+.|.++=|||--+.+.|..+|..+ ++++|.||-+=.+|=..
T Consensus 69 ~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~-----~~pfIsvPT~AS~Da~~ 124 (360)
T COG0371 69 SEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRL-----GLPFISVPTIASTDAIT 124 (360)
T ss_pred CHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHc-----CCCEEEecCcccccccc
Confidence 567788888888889999999999999999999888653 57899999988888764
No 125
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=48.46 E-value=21 Score=36.85 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=29.9
Q ss_pred HHHcCCCEEEEecCchhHHHHHH-HHHHHhcCCCCceEEE-eeccccCCCC
Q 008310 180 VKKLDLDGLVVIGGDDSNTNACL-LAENFRSKDMKTRVIG-CPKTIDGDLK 228 (570)
Q Consensus 180 l~k~~Id~LviIGGddS~t~A~~-Lae~~~~~g~~i~VIg-VPKTIDNDL~ 228 (570)
+...+.|.+|++|||||...+.. |.+ .. +.+.+| +|.==-||+.
T Consensus 53 ~~~~~~d~ivv~GGDGTl~~v~~~l~~----~~-~~~~lgiiP~Gt~N~~a 98 (293)
T TIGR00147 53 ARKFGVDTVIAGGGDGTINEVVNALIQ----LD-DIPALGILPLGTANDFA 98 (293)
T ss_pred HHhcCCCEEEEECCCChHHHHHHHHhc----CC-CCCcEEEEcCcCHHHHH
Confidence 34567899999999999887653 432 11 233566 8976677776
No 126
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=48.13 E-value=47 Score=40.08 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAE 205 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae 205 (570)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-
T Consensus 524 ~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia~ 560 (862)
T PRK13805 524 TLSTVRKGAELMRSFKPDTIIALGGGSPMDAAKIMWL 560 (862)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHH
Confidence 4578999999999999999999999999999877763
No 127
>PRK13337 putative lipid kinase; Reviewed
Probab=47.93 E-value=30 Score=36.03 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCC
Q 008310 174 KQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 228 (570)
Q Consensus 174 ~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 228 (570)
.++++.+...+.|.||++|||||...+.. .+...+.++++--+|.==-||+.
T Consensus 47 ~~~a~~~~~~~~d~vvv~GGDGTl~~vv~---gl~~~~~~~~lgiiP~GT~NdfA 98 (304)
T PRK13337 47 TLAAERAVERKFDLVIAAGGDGTLNEVVN---GIAEKENRPKLGIIPVGTTNDFA 98 (304)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCHHHHHHH---HHhhCCCCCcEEEECCcCHhHHH
Confidence 34444455667899999999999877653 22223445567778877778876
No 128
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=47.21 E-value=97 Score=31.24 Aligned_cols=102 Identities=20% Similarity=0.172 Sum_probs=59.1
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
.|||++..-..|-...++.|+-+.++.. |..+. +..+. .+++
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~---~~~~ 42 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKEL--GAEVI---------------------------------VQNAN---GDPA 42 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHHc--CCEEE---------------------------------EECCC---CCHH
Confidence 4788887777788888888888776542 33332 00011 1334
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChh
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFD 239 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFd 239 (570)
...+.++.+...++|++++.+.+.+... ..| +.+.+.| ++||.+ |.+........++++|
T Consensus 43 ~~~~~i~~~~~~~vdgiii~~~~~~~~~-~~l-~~l~~~~--ipvV~~----~~~~~~~~~~~~v~~d 102 (288)
T cd01538 43 KQISQIENMIAKGVDVLVIAPVDGEALA-SAV-EKAADAG--IPVIAY----DRLILNSNVDYYVSFD 102 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEecCChhhHH-HHH-HHHHHCC--CCEEEE----CCCCCCCCcceEEEeC
Confidence 4567777788899999999886654211 223 3344445 567754 4444332222345544
No 129
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.16 E-value=2.5e+02 Score=28.11 Aligned_cols=67 Identities=25% Similarity=0.204 Sum_probs=47.6
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCCh
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETP 170 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~ 170 (570)
++||++...-..|....++.|+.+.+++. +..++ +..+. .++
T Consensus 1 ~~ig~i~~~~~~~~~~~~~~gi~~~a~~~--gy~~~---------------------------------~~~~~---~~~ 42 (280)
T cd06315 1 KNIIFVASDLKNGGILGVGEGVREAAKAI--GWNLR---------------------------------ILDGR---GSE 42 (280)
T ss_pred CeEEEEecccCCcHHHHHHHHHHHHHHHc--CcEEE---------------------------------EECCC---CCH
Confidence 47999998888899999999998887543 22221 10110 134
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCch
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDD 195 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGdd 195 (570)
++..++++.+...++||+|+.+.+-
T Consensus 43 ~~~~~~i~~l~~~~vdgiil~~~~~ 67 (280)
T cd06315 43 AGQAAALNQAIALKPDGIVLGGVDA 67 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCH
Confidence 4556788889999999999998653
No 130
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.91 E-value=23 Score=37.38 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=37.2
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHH---HHHHHHHH
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTF---SEVIGNVM 253 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~---se~I~ni~ 253 (570)
+.|.+|++|||||+-.|+.... +.+++|+||.. . -++||-|...-. -+++.++.
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~------~-----G~lGFL~~~~~~~~~~~~l~~i~ 113 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV------G-----GHLGFLTHPRDLLQDESVWDRLQ 113 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec------C-----CcceEecCchhhcchHHHHHHHH
Confidence 5899999999999888765532 34678999875 1 278998865321 34555553
No 131
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=46.62 E-value=48 Score=36.74 Aligned_cols=48 Identities=8% Similarity=0.085 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHH-HHHHHHHHHhcCCCCceEEEe
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNT-NACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t-~A~~Lae~~~~~g~~i~VIgV 219 (570)
.-+.+++.|++-++|+.|..-.-|+-+ .++..+.++++.|+++-.|+.
T Consensus 324 ~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~ 372 (431)
T TIGR01917 324 FAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICT 372 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEee
Confidence 346789999999999999998877754 467778888888876555543
No 132
>PRK10586 putative oxidoreductase; Provisional
Probab=46.46 E-value=42 Score=36.25 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCC
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKD 231 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ 231 (570)
+.++.+++.+.++ .+.|.+|-|||--+++.|..++.. ..+++|.||-|-.+|-..+.
T Consensus 72 ~~~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s~~s~ 128 (362)
T PRK10586 72 SESDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWTP 128 (362)
T ss_pred CHHHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCccccccccC
Confidence 3566777766665 588999999999999999988863 25689999988777765443
No 133
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=46.43 E-value=83 Score=31.14 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=41.3
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEe-CCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFR-GGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~-~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
++||||+.||+ .+. ...+.+++........+..+. +-. +.....+...-|-..+--+..++.
T Consensus 1 m~ki~vl~sg~-gs~----~~~ll~~~~~~~~~~~I~~vvs~~~------------~~~~~~~a~~~gIp~~~~~~~~~~ 63 (200)
T PRK05647 1 MKRIVVLASGN-GSN----LQAIIDACAAGQLPAEIVAVISDRP------------DAYGLERAEAAGIPTFVLDHKDFP 63 (200)
T ss_pred CceEEEEEcCC-Chh----HHHHHHHHHcCCCCcEEEEEEecCc------------cchHHHHHHHcCCCEEEECccccC
Confidence 47999999987 222 234444443322223443322 111 011222222334333332223333
Q ss_pred ChHHHH-HHHHHHHHcCCCEEEEec
Q 008310 169 TPEQFK-QAEETVKKLDLDGLVVIG 192 (570)
Q Consensus 169 ~~e~~~-~~~~~l~k~~Id~LviIG 192 (570)
+.+.++ .+.+.+++++.|.+|+.|
T Consensus 64 ~~~~~~~~~~~~l~~~~~D~iv~~~ 88 (200)
T PRK05647 64 SREAFDAALVEALDAYQPDLVVLAG 88 (200)
T ss_pred chhHhHHHHHHHHHHhCcCEEEhHH
Confidence 344443 456778889999777654
No 134
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.80 E-value=22 Score=36.96 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=34.0
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHH--HHHHHHHHHH
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACK--TFSEVIGNVM 253 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k--~~se~I~ni~ 253 (570)
+.|.+|++|||||+-.|+... ..+|+||-. -.+||-|... -+-+.+..+.
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~--------~~PilGIN~------------G~lGFL~~~~~~~~~~~l~~i~ 103 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRA--------KGPILGINM------------GGLGFLTEIEIDEVGSAIKKLI 103 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHc--------CCCEEEEEC------------CCCccCcccCHHHHHHHHHHHH
Confidence 689999999999988776532 247999853 2789988643 2333444443
No 135
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=45.29 E-value=83 Score=30.79 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChh--hHHHHHHH
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFD--TACKTFSE 247 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFd--TA~k~~se 247 (570)
++...++++.+...++|++|+++.+.+.. ..+.+.+.+ ++||.+ |++.....+ .++++| .+.+..++
T Consensus 41 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~----~~~~l~~~~--ipvV~~----~~~~~~~~~-~~v~~d~~~~~~~~~~ 109 (268)
T cd06298 41 KEKELKVLNNLLAKQVDGIIFMGGKISEE----HREEFKRSP--TPVVLA----GSVDEDNEL-PSVNIDYKKAAFEATE 109 (268)
T ss_pred HHHHHHHHHHHHHhcCCEEEEeCCCCcHH----HHHHHhcCC--CCEEEE----ccccCCCCC-CEEEECcHHHHHHHHH
Confidence 34445666777789999999998654322 223333344 556665 333332221 244544 45554444
Q ss_pred H
Q 008310 248 V 248 (570)
Q Consensus 248 ~ 248 (570)
.
T Consensus 110 ~ 110 (268)
T cd06298 110 L 110 (268)
T ss_pred H
Confidence 3
No 136
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.63 E-value=2e+02 Score=28.26 Aligned_cols=90 Identities=20% Similarity=0.295 Sum_probs=57.1
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
.||||+..-..|-...++.|+.+.++.. +..++-. .+. .+++
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~~--g~~~~~~---------------------------------~~~---~~~~ 42 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRAA--GYSLLIA---------------------------------NSL---NDPE 42 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHHc--CCEEEEE---------------------------------eCC---CChH
Confidence 4899998888899999999998887652 3333310 000 1334
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecccc
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTID 224 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTID 224 (570)
...++++.+...++||+++.+++... ..+.+.+++.+ ++||.+=...+
T Consensus 43 ~~~~~i~~l~~~~vdgii~~~~~~~~---~~~~~~~~~~~--ipvV~i~~~~~ 90 (269)
T cd06281 43 RELEILRSFEQRRMDGIIIAPGDERD---PELVDALASLD--LPIVLLDRDMG 90 (269)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCc---HHHHHHHHhCC--CCEEEEecccC
Confidence 55677788899999999999876432 12234444445 45666543333
No 137
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=44.48 E-value=45 Score=32.06 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 222 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 222 (570)
++++.+.+.++..++.+++.+|.+.|- +..-+-.++- ....+|||||-.
T Consensus 37 Rtp~~~~~~~~~a~~~g~~viIa~AG~-aa~Lpgvva~-----~t~~PVIgvP~~ 85 (156)
T TIGR01162 37 RTPELMLEYAKEAEERGIKVIIAGAGG-AAHLPGMVAA-----LTPLPVIGVPVP 85 (156)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEeCCc-cchhHHHHHh-----ccCCCEEEecCC
Confidence 467889999999999999776666554 2222223332 346899999974
No 138
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=43.17 E-value=2.4e+02 Score=28.83 Aligned_cols=91 Identities=24% Similarity=0.335 Sum_probs=61.0
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCCh
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETP 170 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~ 170 (570)
.+||||+.--.-|=--.++.|+-+.+++. |..++ |..+.. ++
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~~~--Gy~l~---------------------------------l~~t~~---~~ 43 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAREH--GYQLL---------------------------------LCNTGD---DE 43 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEEETT---TH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHHc--CCEEE---------------------------------EecCCC---ch
Confidence 47999999888898999999998887642 33333 111111 22
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCC
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 226 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 226 (570)
+ .++.++.|.+.++||+|+.+-..+...-..+.+ . +++||.+=.+.+++
T Consensus 44 ~-~e~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~---~---~iPvV~~~~~~~~~ 92 (279)
T PF00532_consen 44 E-KEEYIELLLQRRVDGIILASSENDDEELRRLIK---S---GIPVVLIDRYIDNP 92 (279)
T ss_dssp H-HHHHHHHHHHTTSSEEEEESSSCTCHHHHHHHH---T---TSEEEEESS-SCTT
T ss_pred H-HHHHHHHHHhcCCCEEEEecccCChHHHHHHHH---c---CCCEEEEEeccCCc
Confidence 2 338889999999999999976666344333332 2 57888876666665
No 139
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=42.97 E-value=4.3e+02 Score=27.93 Aligned_cols=106 Identities=11% Similarity=-0.019 Sum_probs=63.5
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIET 169 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~ 169 (570)
..+|+++......|=...+..|+-++++.. |.++. +. +.+ .. +
T Consensus 23 ~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~--G~~v~-~~-------------------------------~~~--~~-d 65 (336)
T PRK15408 23 AERIAFIPKLVGVGFFTSGGNGAKEAGKEL--GVDVT-YD-------------------------------GPT--EP-S 65 (336)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHHHh--CCEEE-EE-------------------------------CCC--CC-C
Confidence 458999999999999999999998887542 33332 00 010 11 2
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
.+.....++.+...++|++++..-|... -...|.+ +.+.| |+||. +|.|...+.....+|.++
T Consensus 66 ~~~q~~~i~~li~~~vdgIiv~~~d~~a-l~~~l~~-a~~~g--IpVV~----~d~~~~~~~~~~~V~~~~ 128 (336)
T PRK15408 66 VSGQVQLINNFVNQGYNAIIVSAVSPDG-LCPALKR-AMQRG--VKVLT----WDSDTKPECRSYYINQGT 128 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHHH-HHHHHHH-HHHCC--CeEEE----eCCCCCCccceEEEecCC
Confidence 2333467888889999999998655332 2233332 33444 56775 566654333223455444
No 140
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=42.92 E-value=56 Score=33.79 Aligned_cols=109 Identities=18% Similarity=0.254 Sum_probs=66.2
Q ss_pred CChHHHHHHHHHHHHcCCC---EEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHH
Q 008310 168 ETPEQFKQAEETVKKLDLD---GLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKT 244 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id---~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~ 244 (570)
++-+.+.++.+.+.+.+++ .||.+||--..+-|-..|-.+. +| ++.|.||-|+-. .+|.|+|--||+++
T Consensus 10 Ksl~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y~-RG--i~~i~vPTTLLa-----~vDssiGgK~~vN~ 81 (260)
T PF01761_consen 10 KSLETVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTYM-RG--IPFIQVPTTLLA-----QVDSSIGGKTGVNF 81 (260)
T ss_dssp SSHHHHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHBT-T----EEEEEE-SHHH-----HHTTTSSSEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHc-cC--CceEeccccHHH-----HHhcccCCCeeeeC
Confidence 4668899999999999995 9999999888888877777654 34 789999998754 23356666666543
Q ss_pred HHHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHH
Q 008310 245 FSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIIC 314 (570)
Q Consensus 245 ~se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~ 314 (570)
...++-+ +.=.+|..|+|--+... ..+-.++..-++++|+
T Consensus 82 ------------~~~KN~i-----------------G~f~~P~~V~iD~~~l~-tL~~~e~~~G~aEiiK 121 (260)
T PF01761_consen 82 ------------PGGKNLI-----------------GTFYQPEAVLIDPSFLK-TLPPREIRSGLAEIIK 121 (260)
T ss_dssp ------------TTEEEEE-----------------EEE---SEEEEEGGGGG-GS-HHHHHHHHHHHHH
T ss_pred ------------CCCCCcc-----------------cccCCCceeEEcHHHHh-hccHHHHHhCHHHHHH
Confidence 1122211 22347888888666542 3344455555555544
No 141
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=42.87 E-value=1.1e+02 Score=30.09 Aligned_cols=102 Identities=20% Similarity=0.329 Sum_probs=66.0
Q ss_pred EEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccC---------CCEEECChhhhccccccCCceecccCCC
Q 008310 95 VVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMK---------CKFVELSSEFIYPYRNQGGFDMLCSGRD 165 (570)
Q Consensus 95 Iv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~---------~~~~eLt~~~v~~~~n~GG~~~lGs~R~ 165 (570)
+|++||+.|-.... +. .......++++=+|..=|++ |++--++++..+.|... |..++-....
T Consensus 2 ~Ii~~g~~~~~~~~-----~~--~~~~~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~-~~~~~~~p~~ 73 (208)
T cd07995 2 LILLGGPLPDSPLL-----LK--LWKKADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSK-GVEIIHFPDE 73 (208)
T ss_pred EEEECCcCCcchhH-----HH--hhccCCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhc-CCeEEECCCC
Confidence 67888888854443 11 22345678888888766655 33444455556666544 4334332222
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCch-----hHHHHHHHHHH
Q 008310 166 KIETPEQFKQAEETVKKLDLDGLVVIGGDD-----SNTNACLLAEN 206 (570)
Q Consensus 166 k~~~~e~~~~~~~~l~k~~Id~LviIGGdd-----S~t~A~~Lae~ 206 (570)
++.-+++++++.+.+++-+-++++|+-| ++.+...|..+
T Consensus 74 --KD~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~l~~~ 117 (208)
T cd07995 74 --KDFTDFEKALKLALERGADEIVILGATGGRLDHTLANLNLLLKY 117 (208)
T ss_pred --CCCCHHHHHHHHHHHcCCCEEEEEccCCCcHHHHHHHHHHHHHH
Confidence 3445799999999999999999999866 45666666665
No 142
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=41.86 E-value=4.1e+02 Score=27.32 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=48.1
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
....|||++..-+.|=...++.|+-+.++.. +.+++-+ .+- .
T Consensus 58 ~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~---------------------------------~~~---~ 99 (341)
T PRK10703 58 HTKSIGLLATSSEAPYFAEIIEAVEKNCYQK--GYTLILC---------------------------------NAW---N 99 (341)
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--CCEEEEE---------------------------------eCC---C
Confidence 4468999998888888889999998886543 3332211 000 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSN 197 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~ 197 (570)
+.+...+.++.+...++||+++.+++.+.
T Consensus 100 ~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 128 (341)
T PRK10703 100 NLEKQRAYLSMLAQKRVDGLLVMCSEYPE 128 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCH
Confidence 23444566677888999999999876543
No 143
>PRK13055 putative lipid kinase; Reviewed
Probab=41.33 E-value=46 Score=35.32 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHH-HHHHHHhcCCCCceEEEeeccccCCCC
Q 008310 174 KQAEETVKKLDLDGLVVIGGDDSNTNAC-LLAENFRSKDMKTRVIGCPKTIDGDLK 228 (570)
Q Consensus 174 ~~~~~~l~k~~Id~LviIGGddS~t~A~-~Lae~~~~~g~~i~VIgVPKTIDNDL~ 228 (570)
++.++.+...+.|.||++|||||...+. -|.+ .+..+++--+|.==-||+.
T Consensus 49 ~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~----~~~~~~LgiiP~GTgNdfA 100 (334)
T PRK13055 49 KNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAP----LEKRPKMAIIPAGTTNDYA 100 (334)
T ss_pred HHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhh----cCCCCcEEEECCCchhHHH
Confidence 3444444567789999999999977654 3332 2334556668987778876
No 144
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=41.27 E-value=39 Score=38.08 Aligned_cols=116 Identities=22% Similarity=0.323 Sum_probs=67.8
Q ss_pred CCEEECChhh---hccccccCCceecccCCC-CCCChHHHHHH-HHHHHHcCCCEEEEecCchhHHH--HHHHHHHHhcC
Q 008310 138 CKFVELSSEF---IYPYRNQGGFDMLCSGRD-KIETPEQFKQA-EETVKKLDLDGLVVIGGDDSNTN--ACLLAENFRSK 210 (570)
Q Consensus 138 ~~~~eLt~~~---v~~~~n~GG~~~lGs~R~-k~~~~e~~~~~-~~~l~k~~Id~LviIGGddS~t~--A~~Lae~~~~~ 210 (570)
++|++|.+.. ++.++..|- -++..-. +.-+.++++.. .+.+.++ +||++|-||.|.--. .-..++|.+++
T Consensus 295 GKYv~l~DaY~Sv~EAL~hag~--~~~~~v~i~wIdse~le~~~~~~~~~~-~dgIlVPGGFG~RG~eGkI~Ai~yAREn 371 (533)
T COG0504 295 GKYVELPDAYKSVIEALKHAGI--ALGVKVNIKWIDSEDLEEENAAELEKL-VDGILVPGGFGYRGVEGKIAAIRYAREN 371 (533)
T ss_pred ECCcCchhHHHHHHHHHHhhhh--hcCCceeeEEEccccccccchhhhhhc-CCEEEeCCCCCcCchHHHHHHHHHHHhc
Confidence 6788888764 444444433 2222211 11133333332 2234444 999999999996322 23345666665
Q ss_pred CCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhcCC----eeEEEEecCCCCc
Q 008310 211 DMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGK----YYHFIRLMGRAAS 274 (570)
Q Consensus 211 g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ni~~Da~S~~k----~~~fIevMGR~ag 274 (570)
+ ++..|| |+|+..|+=-+|.-+-.+ .+|.|+.- -+-||.+|.-..+
T Consensus 372 ~--iP~lGI---------------ClGmQ~aviE~ARnv~Gl-~~AnS~Efdp~t~~pVv~l~~eq~~ 421 (533)
T COG0504 372 N--IPFLGI---------------CLGMQLAVIEFARNVLGL-EGANSTEFDPDTKYPVVDLMPEQKD 421 (533)
T ss_pred C--CCEEEE---------------chhHHHHHHHHHHHhcCC-ccCcccccCCCCCCceEEecccccc
Confidence 5 446663 999999999999877777 68888531 1246666655433
No 145
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=41.11 E-value=55 Score=34.58 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHc-CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCC
Q 008310 171 EQFKQAEETVKKL-DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 228 (570)
Q Consensus 171 e~~~~~~~~l~k~-~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 228 (570)
+.++++.+.+++. +.|.+|-|||--.++.|..+|.. + .+++|.||-|.-+|-.
T Consensus 61 ~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~---~--~~p~i~vPTt~~tgs~ 114 (331)
T cd08174 61 SDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFL---R--GIPLSVPTTNLNDDGI 114 (331)
T ss_pred cCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhh---c--CCCEEEecCccccCcc
Confidence 4455566666665 59999999999999998888762 2 4689999998866543
No 146
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=41.10 E-value=41 Score=35.23 Aligned_cols=49 Identities=18% Similarity=0.357 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhhhcCCeeEEEEecCC-CCcHHHHHhhhhcCCcEEEEC
Q 008310 243 KTFSEVIGNVMTDARSSGKYYHFIRLMGR-AASHITLECALQTHPNIAIIG 292 (570)
Q Consensus 243 k~~se~I~ni~~Da~S~~k~~~fIevMGR-~ag~lAle~aLat~pnivlIp 292 (570)
++++++-..+. +.+..++++.||=+||- |.||++|--.-...++.|+++
T Consensus 5 ~ti~~lr~~~~-~~r~~gk~Vg~VPTMG~LH~GHlsLVr~A~~~~d~VVVS 54 (285)
T COG0414 5 TTIAELRQAIK-ALRKEGKRVGLVPTMGNLHEGHLSLVRRAKKENDVVVVS 54 (285)
T ss_pred ehHHHHHHHHH-HHHHcCCEEEEEcCCcccchHHHHHHHHHhhcCCeEEEE
Confidence 34455544453 77788899999999997 899999977776788888763
No 147
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=41.01 E-value=3.1e+02 Score=27.77 Aligned_cols=121 Identities=12% Similarity=0.023 Sum_probs=73.4
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+..+||+| .|.+.|.++.-+.|..+.++..+|+.+++...- |. ..
T Consensus 119 ~t~kVG~I-~g~~~~~~~~~~~gF~~G~~~~~p~~~v~~~~~------------------------g~----------~~ 163 (258)
T cd06353 119 KTNKVGYV-AAFPIPEVVRGINAFALGARSVNPDATVKVIWT------------------------GS----------WF 163 (258)
T ss_pred cCCcEEEE-cCcccHHHHHHHHHHHHHHHHHCCCcEEEEEEe------------------------cC----------CC
Confidence 34588888 466788888888888888877777766553211 11 12
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEV 248 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~ 248 (570)
+++.-.++.+.+...+.|.++-.++. ..+. +.++++| +.+||+-.--+.+.+..-+ .|+++-+...
T Consensus 164 D~~~a~~~a~~l~~~G~DvI~~~~~~---~g~~---~aa~~~g--~~~IG~d~dq~~~~~~~vl------tS~v~~~~~~ 229 (258)
T cd06353 164 DPAKEKEAALALIDQGADVIYQHTDS---PGVI---QAAEEKG--VYAIGYVSDMSKFAPKAVL------TSAVWNWGPY 229 (258)
T ss_pred CcHHHHHHHHHHHHCCCcEEEecCCC---hHHH---HHHHHhC--CEEEeeccchhhhCCCCEE------EEEeeehHHH
Confidence 34444666677778899988877622 2222 2223345 5799986444444443322 5666666666
Q ss_pred HHHHHHHhhh
Q 008310 249 IGNVMTDARS 258 (570)
Q Consensus 249 I~ni~~Da~S 258 (570)
+.++..++..
T Consensus 230 ~~~~~~~~~~ 239 (258)
T cd06353 230 YVAAVKAVLD 239 (258)
T ss_pred HHHHHHHHHc
Confidence 6666666554
No 148
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=40.81 E-value=4.1e+02 Score=27.09 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
++...++++.+...++|++++.+-+... ....+ +.+.+.+ ++||.+
T Consensus 40 ~~~q~~~i~~l~~~~vDgIIi~~~~~~~-~~~~l-~~~~~~~--iPvV~~ 85 (302)
T TIGR02634 40 EAKQISQIENLIARGVDVLVIIPQNGQV-LSNAV-QEAKDEG--IKVVAY 85 (302)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChhH-HHHHH-HHHHHCC--CeEEEe
Confidence 4455678899999999999998765321 12223 3344444 567754
No 149
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=40.81 E-value=2.8e+02 Score=25.18 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=47.5
Q ss_pred ecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhcCCeeEEEEecC
Q 008310 191 IGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMG 270 (570)
Q Consensus 191 IGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ni~~Da~S~~k~~~fIevMG 270 (570)
-||.|.-+.+..|+.++.++|..+.+ +|-|..++.++ -.|-+|-+-+
T Consensus 8 kgg~gkt~~~~~~a~~~~~~~~~~~~------vd~D~~~~~~~---------------------------yd~VIiD~p~ 54 (139)
T cd02038 8 KGGVGKTNISANLALALAKLGKRVLL------LDADLGLANLD---------------------------YDYIIIDTGA 54 (139)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCcEEE------EECCCCCCCCC---------------------------CCEEEEECCC
Confidence 48899999999999999988876554 57887765542 2244666654
Q ss_pred CCCcHHHHHhhhhcCCcEEEECCchh
Q 008310 271 RAASHITLECALQTHPNIAIIGEEIA 296 (570)
Q Consensus 271 R~ag~lAle~aLat~pnivlIpEe~~ 296 (570)
..++.+.. +..++|.++++=++.
T Consensus 55 -~~~~~~~~--~l~~aD~vviv~~~~ 77 (139)
T cd02038 55 -GISDNVLD--FFLAADEVIVVTTPE 77 (139)
T ss_pred -CCCHHHHH--HHHhCCeEEEEcCCC
Confidence 56666654 345678888865543
No 150
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=40.75 E-value=1.8e+02 Score=31.44 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeC-----Cccccc------CCC-EE--ECCh-hhhccc--cccCCceecc-cCCCCCC
Q 008310 107 NVIAGIFDYLQERTKGSKLYGFRG-----GPAGIM------KCK-FV--ELSS-EFIYPY--RNQGGFDMLC-SGRDKIE 168 (570)
Q Consensus 107 nvI~gl~~~l~~~~~~~~v~Gf~~-----G~~GLl------~~~-~~--eLt~-~~v~~~--~n~GG~~~lG-s~R~k~~ 168 (570)
+++..+.+.++.......||++.- |.+|-. +.+ .+ |.+. .+.... ...|+-.+|. .-+.-+-
T Consensus 184 a~l~e~l~~l~~~~~~~~l~~~~tvqEEvG~rGA~~aa~~i~pD~aI~vDv~~~~d~~~~~~~~lg~Gp~i~~~D~~~i~ 263 (350)
T TIGR03107 184 LMILELLESLKDQELPNTLIAGANVQEEVGLRGAHVSTTKFNPDIFFAVDCSPAGDIYGDQGGKLGEGTLLRFFDPGHIM 263 (350)
T ss_pred HHHHHHHHHhhhcCCCceEEEEEEChhhcCchhhhhHHhhCCCCEEEEEecCCcCCCCCCCccccCCCceEEEecCCCCC
Confidence 344555555554444667887542 555532 333 22 3222 111111 2233323552 2244566
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeec
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 221 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 221 (570)
++.-.+.+.+.+++++|..=+++-|-||-.++..++ ..|+++-+|+||.
T Consensus 264 ~~~l~~~l~~~A~~~~I~~Q~~~~~gGtDa~~~~~~----~~Gvpt~~i~ip~ 312 (350)
T TIGR03107 264 LPRMKDFLLTTAEEAGIKYQYYVAKGGTDAGAAHLK----NSGVPSTTIGVCA 312 (350)
T ss_pred CHHHHHHHHHHHHHcCCCcEEecCCCCchHHHHHHh----CCCCcEEEEccCc
Confidence 788889999999999999877664435544444443 4699999999995
No 151
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=40.72 E-value=39 Score=34.77 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCC
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 228 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 228 (570)
+.+...++.+.++..+.|.+|-+||--.++.|...|... +++.|.||-+..+|=.
T Consensus 60 ~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~-----~~p~isVPTa~S~DG~ 114 (250)
T PF13685_consen 60 DEDEVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFEL-----GIPFISVPTAASHDGF 114 (250)
T ss_dssp BHHHHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHH-----T--EEEEES--SSGGG
T ss_pred CHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhc-----CCCEEEeccccccccc
Confidence 456678888888888999999999988887777776543 5789999998888864
No 152
>PRK05670 anthranilate synthase component II; Provisional
Probab=40.46 E-value=38 Score=32.76 Aligned_cols=51 Identities=22% Similarity=0.349 Sum_probs=33.3
Q ss_pred HHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHH
Q 008310 181 KKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFS 246 (570)
Q Consensus 181 ~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~s 246 (570)
+.++.|+||+.||.++-..+....+.+++-..+++|.|| |+|+...+....
T Consensus 40 ~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGI---------------ClG~Qlla~alG 90 (189)
T PRK05670 40 EALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGV---------------CLGHQAIGEAFG 90 (189)
T ss_pred HhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE---------------CHHHHHHHHHhC
Confidence 556799999999998875543333332221223567764 999988777653
No 153
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=40.14 E-value=5.7e+02 Score=28.52 Aligned_cols=139 Identities=17% Similarity=0.306 Sum_probs=91.4
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
.+||.-. ||-=-+||.+.++..+. .+.-| .++-|...|+.+ ||. |+ .|+.
T Consensus 12 ~~gI~sV---Csahp~VieAAl~~a~~--~~~pv--------------LiEAT~NQVnq~---GGY----TG----mtP~ 61 (420)
T TIGR02810 12 PRGIYSV---CSAHPLVLEAAIRRARA--SGTPV--------------LIEATSNQVNQF---GGY----TG----MTPA 61 (420)
T ss_pred CCeEEEE---CCCCHHHHHHHHHHHhh--cCCcE--------------EEEecccccccc---CCc----CC----CCHH
Confidence 4566654 34445899998876543 23333 478888888887 884 22 2677
Q ss_pred HHHH-HHHHHHHcCCCE-EEEecCch-------------hHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCC
Q 008310 172 QFKQ-AEETVKKLDLDG-LVVIGGDD-------------SNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISF 236 (570)
Q Consensus 172 ~~~~-~~~~l~k~~Id~-LviIGGdd-------------S~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~ 236 (570)
+|.. +.+..++.+++. .+|+|||. .|..|..|-+.+.+.|+. -|++=.|++ .. +....+
T Consensus 62 dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca--~d~~~L 135 (420)
T TIGR02810 62 DFRDFVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFT--KIHLDASMG--CA--GDPAPL 135 (420)
T ss_pred HHHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--cc--CCCccC
Confidence 7754 456678899998 99999984 456677776666777875 788877777 11 122366
Q ss_pred ChhhHHHHHHHHHHHHHHHhh---hcCCeeEEE
Q 008310 237 GFDTACKTFSEVIGNVMTDAR---SSGKYYHFI 266 (570)
Q Consensus 237 GFdTA~k~~se~I~ni~~Da~---S~~k~~~fI 266 (570)
.-++.++..++++.---..+. ....-+|+|
T Consensus 136 ~d~~vAeRaa~L~~~aE~~~~~~~~~~~~vYvI 168 (420)
T TIGR02810 136 DDATVAERAARLCAVAEAAATDRRGETKPVYVI 168 (420)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 779999999998874433333 222345666
No 154
>PRK13057 putative lipid kinase; Reviewed
Probab=40.07 E-value=73 Score=32.86 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChh
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFD 239 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFd 239 (570)
+.+....++. ...+.|.+|++|||||...+.. .+.. .++++-.+|.===||+.- ++|..
T Consensus 37 ~~~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~~---~l~~--~~~~lgiiP~GT~Ndfar-----~Lg~~ 95 (287)
T PRK13057 37 PDDLSEVIEA-YADGVDLVIVGGGDGTLNAAAP---ALVE--TGLPLGILPLGTANDLAR-----TLGIP 95 (287)
T ss_pred HHHHHHHHHH-HHcCCCEEEEECchHHHHHHHH---HHhc--CCCcEEEECCCCccHHHH-----HcCCC
Confidence 3344444444 3467899999999999877642 2222 246788889877888863 55554
No 155
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=39.73 E-value=2.9e+02 Score=28.53 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCC
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDM 212 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~ 212 (570)
+++..+.+++.++++++|+++. +-++.....+.+++.|.+.|.
T Consensus 54 ~~~~~~~l~~~~~~~~id~ii~-~~d~~~~~~a~~~~~l~~~g~ 96 (326)
T PRK12767 54 DPNYIDRLLDICKKEKIDLLIP-LIDPELPLLAQNRDRFEEIGV 96 (326)
T ss_pred ChhHHHHHHHHHHHhCCCEEEE-CCcHHHHHHHHHHHHHHHcCc
Confidence 3456788899999999997654 566666666677777776653
No 156
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=39.67 E-value=25 Score=33.90 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=38.4
Q ss_pred HHHHHHHHHHH---cCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCC
Q 008310 172 QFKQAEETVKK---LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDL 227 (570)
Q Consensus 172 ~~~~~~~~l~k---~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL 227 (570)
++.-+++.++- -++|+++++-||+-++- |.+.+++.|..+-++|+|+....+|
T Consensus 90 Dv~laIDame~~~~~~iD~~vLvSgD~DF~~---Lv~~lre~G~~V~v~g~~~~ts~~L 145 (160)
T TIGR00288 90 DVRMAVEAMELIYNPNIDAVALVTRDADFLP---VINKAKENGKETIVIGAEPGFSTAL 145 (160)
T ss_pred cHHHHHHHHHHhccCCCCEEEEEeccHhHHH---HHHHHHHCCCEEEEEeCCCCChHHH
Confidence 45555555544 68999999999998765 4466667898888888876544444
No 157
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=39.49 E-value=3e+02 Score=27.08 Aligned_cols=90 Identities=17% Similarity=0.080 Sum_probs=53.6
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
+||||+..-..|....++.|+-++++.. |.++.-+. ... -.+++
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~---------------------------------~~~-~~~~~ 44 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKL--GVSVDIQA---------------------------------APS-EGDQQ 44 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHh--CCeEEEEc---------------------------------cCC-CCCHH
Confidence 5888888777888888888888876542 22222100 000 01234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeec
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 221 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 221 (570)
....+++.+...++||+|+.+.+.+...+ .+ +++.+.+ ++||.+-.
T Consensus 45 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-~~-~~~~~~~--iPvV~~~~ 90 (275)
T cd06320 45 GQLSIAENMINKGYKGLLFSPISDVNLVP-AV-ERAKKKG--IPVVNVND 90 (275)
T ss_pred HHHHHHHHHHHhCCCEEEECCCChHHhHH-HH-HHHHHCC--CeEEEECC
Confidence 45567888888999999987765442222 22 4444444 56776543
No 158
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=38.68 E-value=2e+02 Score=32.23 Aligned_cols=95 Identities=21% Similarity=0.234 Sum_probs=68.1
Q ss_pred CCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCC
Q 008310 87 ENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDK 166 (570)
Q Consensus 87 ~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k 166 (570)
+..|++||||||=- -+||+-++..++...|..+++-+.- .-+|=
T Consensus 132 P~~p~~IGVITS~t-----gAairDIl~~~~rR~P~~~viv~pt---------------------~VQG~---------- 175 (440)
T COG1570 132 PFFPKKIGVITSPT-----GAALRDILHTLSRRFPSVEVIVYPT---------------------LVQGE---------- 175 (440)
T ss_pred CCCCCeEEEEcCCc-----hHHHHHHHHHHHhhCCCCeEEEEec---------------------cccCC----------
Confidence 35578999999732 3688888888888888877764331 11222
Q ss_pred CCChHHHHHHHHHHHHcC-CCEEEEecCchhHHHHHHHHHHHhc---CCCCceEEE
Q 008310 167 IETPEQFKQAEETVKKLD-LDGLVVIGGDDSNTNACLLAENFRS---KDMKTRVIG 218 (570)
Q Consensus 167 ~~~~e~~~~~~~~l~k~~-Id~LviIGGddS~t~A~~Lae~~~~---~g~~i~VIg 218 (570)
...+++-++++.+.+.+ +|.|||.=|-||...--.+.|+... -.++|+||.
T Consensus 176 -~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 176 -GAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred -CcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEe
Confidence 13567788888888888 9999999999999987766665432 255778875
No 159
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=38.58 E-value=1.3e+02 Score=30.23 Aligned_cols=95 Identities=19% Similarity=0.302 Sum_probs=58.3
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcc------cc--cCCCEEECCh--hhhccccccCCceec
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPA------GI--MKCKFVELSS--EFIYPYRNQGGFDML 160 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~------GL--l~~~~~eLt~--~~v~~~~n~GG~~~l 160 (570)
++||||-.-|.+. .-+.+. +..+|.+|-++..-.. |+ ++.++.+++. +++.+ +|.+
T Consensus 1 mKIaiIgAsG~~G------s~i~~E--A~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g------~DaV 66 (211)
T COG2910 1 MKIAIIGASGKAG------SRILKE--ALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAG------HDAV 66 (211)
T ss_pred CeEEEEecCchhH------HHHHHH--HHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcC------CceE
Confidence 4789998777653 234444 3356899999865543 32 3556777776 55543 3332
Q ss_pred ccCCCC--CCCh----HHHHHHHHHHHHcCCCEEEEecCchhHHH
Q 008310 161 CSGRDK--IETP----EQFKQAEETVKKLDLDGLVVIGGDDSNTN 199 (570)
Q Consensus 161 Gs~R~k--~~~~----e~~~~~~~~l~k~~Id~LviIGGddS~t~ 199 (570)
=+.-.- .... ...+..++.++.-+..-|+|+||-||+.-
T Consensus 67 IsA~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~i 111 (211)
T COG2910 67 ISAFGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLEI 111 (211)
T ss_pred EEeccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEE
Confidence 222111 1111 22556677888889999999999999643
No 160
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=38.40 E-value=1e+02 Score=34.71 Aligned_cols=112 Identities=16% Similarity=0.169 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCce--ecccCCCCCCChHHHHHHHHHHHHcCCCEE
Q 008310 111 GIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFD--MLCSGRDKIETPEQFKQAEETVKKLDLDGL 188 (570)
Q Consensus 111 gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~--~lGs~R~k~~~~e~~~~~~~~l~k~~Id~L 188 (570)
.+-+++....+-.+++-|.|-..|=-+ -..+-++.+..+....|.. +.-|.+ +.+-...++.+...+.|++
T Consensus 100 ~~~~~~~~~~~~kr~lvIvNP~SGkg~--a~k~~~~~v~~~L~~~gi~~~v~~T~~-----~ghA~~la~~~~~~~~D~V 172 (481)
T PLN02958 100 KLRDYLDSLGRPKRLLVFVNPFGGKKS--ASKIFFDVVKPLLEDADIQLTIQETKY-----QLHAKEVVRTMDLSKYDGI 172 (481)
T ss_pred HHHHHHhhccCCcEEEEEEcCCCCCcc--hhHHHHHHHHHHHHHcCCeEEEEeccC-----ccHHHHHHHHhhhcCCCEE
Confidence 344444333334577777776666322 1222223355444444532 222221 2233444455555678999
Q ss_pred EEecCchhHHHHH-HHHHHH-hcCCCCceEEEeeccccCCCCC
Q 008310 189 VVIGGDDSNTNAC-LLAENF-RSKDMKTRVIGCPKTIDGDLKC 229 (570)
Q Consensus 189 viIGGddS~t~A~-~Lae~~-~~~g~~i~VIgVPKTIDNDL~~ 229 (570)
|++||||+...+. -|.+.- .+.+.++++--||.==-||+.-
T Consensus 173 V~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfAr 215 (481)
T PLN02958 173 VCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAK 215 (481)
T ss_pred EEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhh
Confidence 9999999976643 332210 0114567888899988999874
No 161
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=38.33 E-value=3e+02 Score=29.34 Aligned_cols=113 Identities=15% Similarity=0.175 Sum_probs=65.2
Q ss_pred EEEecCCCCchhhH--HHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCC-C-CCC
Q 008310 94 GVVLSGGQAPGGHN--VIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRD-K-IET 169 (570)
Q Consensus 94 GIv~sGG~aPG~nn--vI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~-k-~~~ 169 (570)
-|++|||+ |=+.. .+..+++.+++. + .+.+++-|...... .-..+|++.++.++..|= .++..+-. . -+.
T Consensus 162 eV~lsGGD-PLl~~d~~L~~ll~~L~~i-~--~~~~IRi~tr~~~~-~P~rit~el~~~L~~~~~-~~~~vsh~nh~~Ei 235 (331)
T TIGR00238 162 EILISGGD-PLMAKDHELEWLLKRLEEI-P--HLVRLRIGTRLPVV-IPQRITDELCELLASFEL-QLMLVTHINHCNEI 235 (331)
T ss_pred EEEEECCc-cccCCHHHHHHHHHHHHhc-C--CccEEEeecCCCcc-CchhcCHHHHHHHHhcCC-cEEEEccCCChHhC
Confidence 68999998 44433 477777777643 2 22333333322111 113357777776666642 22222211 1 122
Q ss_pred hHHHHHHHHHHHHcCCC----EEEEecCchhHHHHHHHHHHHhcCCC
Q 008310 170 PEQFKQAEETVKKLDLD----GLVVIGGDDSNTNACLLAENFRSKDM 212 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id----~LviIGGddS~t~A~~Lae~~~~~g~ 212 (570)
.+...++++.|++.++. ..+.-|=+|+......|.+.+.+.|+
T Consensus 236 ~~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV 282 (331)
T TIGR00238 236 TEEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGI 282 (331)
T ss_pred CHHHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCe
Confidence 35677778888887764 45667778888888888888776554
No 162
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=37.95 E-value=92 Score=31.96 Aligned_cols=91 Identities=16% Similarity=0.263 Sum_probs=60.9
Q ss_pred EEEEEeCCcccccCCCEEECChhhhccccccCCceecc--cCCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHH---
Q 008310 124 KLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLC--SGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNT--- 198 (570)
Q Consensus 124 ~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lG--s~R~k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t--- 198 (570)
..+-+-+|+.| ....-|......+++.+|...+- |+|+. +..+++..+..+..++|+.+++++||-.-.
T Consensus 30 d~v~Vt~~~~g----~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~--n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~ 103 (274)
T cd00537 30 DFVSVTDGAGG----STRDMTLLAAARILQEGGIEPIPHLTCRDR--NRIELQSILLGAHALGIRNILALRGDPPKGGDQ 103 (274)
T ss_pred CEEEeCCCCCC----chhhhHHHHHHHHHHhcCCCeeeecccCCC--CHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCC
Confidence 44556666665 22233455566777777776544 45554 458899999999999999999999886543
Q ss_pred ---------HHHHHHHHHhcC---CCCceEEEee
Q 008310 199 ---------NACLLAENFRSK---DMKTRVIGCP 220 (570)
Q Consensus 199 ---------~A~~Lae~~~~~---g~~i~VIgVP 220 (570)
.|..|-++.++. +..+.|.+-|
T Consensus 104 ~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yP 137 (274)
T cd00537 104 PGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYP 137 (274)
T ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence 377777777663 3444455555
No 163
>PRK07591 threonine synthase; Validated
Probab=37.89 E-value=1.1e+02 Score=33.85 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCC------CCCCCCCCCC-ChhhHHHHHH
Q 008310 174 KQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD------LKCKDVPISF-GFDTACKTFS 246 (570)
Q Consensus 174 ~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND------L~~~~ie~s~-GFdTA~k~~s 246 (570)
.-++..+++.+.+.++ .+..| |+ +..||-|.+..|++ ++|.||.++... ..|-.+...- .||.|.+...
T Consensus 126 ~~~v~~A~~~g~~~vv-~aSsG-N~-g~alA~~aa~~Gl~-~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~~d~a~~~a~ 201 (421)
T PRK07591 126 SVALTAARELGFTTVA-CASTG-NL-ANSVAAHAARAGLD-SCVFIPADLEAGKIVGTLVYGPTLVAVDGNYDDVNRLCS 201 (421)
T ss_pred HHHHHHHHHcCCCEEE-EeCCC-HH-HHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHH
Confidence 3445566778888875 44333 33 45577788888987 677799866521 1122221122 3666665555
Q ss_pred HHHHHH-HHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcC---CcEEEECCch
Q 008310 247 EVIGNV-MTDARSSGKYYHFIRLMGRAASHITLECALQTH---PNIAIIGEEI 295 (570)
Q Consensus 247 e~I~ni-~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~---pnivlIpEe~ 295 (570)
++..+. ..-..+....-|+|| | .+.+++|..-|.+ ||.+++|=--
T Consensus 202 ~~~~~~~~~~~~n~~~~p~~ie--G--~~Tia~Ei~eQl~~~~pD~iv~pvG~ 250 (421)
T PRK07591 202 ELANEHEGWGFVNINLRPYYAE--G--SKTLGYEVAEQLGWRLPDQVVAPLAS 250 (421)
T ss_pred HHHHhcCCEEEecCCCCccccc--c--hHHHHHHHHHHcCCCCCCEEEEeCCc
Confidence 543321 000000001123333 2 2458899999974 8999998543
No 164
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=37.57 E-value=42 Score=32.62 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=34.3
Q ss_pred HHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHH
Q 008310 180 VKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFS 246 (570)
Q Consensus 180 l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~s 246 (570)
+.+++.|+||+-||.++...+..-.+.+++...+++|.|| |+|+.-.+..+-
T Consensus 39 ~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGI---------------C~G~Qll~~~~G 90 (188)
T TIGR00566 39 IEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGV---------------CLGHQAMGQAFG 90 (188)
T ss_pred HHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEE---------------CHHHHHHHHHcC
Confidence 4668899999999998865532211222211225678884 999998877764
No 165
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=37.25 E-value=1.3e+02 Score=29.46 Aligned_cols=100 Identities=20% Similarity=0.241 Sum_probs=60.6
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
.||||+..-+.|-.+.++.|+.+++++. +..+.-+. +. .+++
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~--------------------------------~~----~~~~ 42 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASAA--GYSTIIGN--------------------------------SD----ENPE 42 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHHc--CCEEEEEe--------------------------------CC----CCHH
Confidence 4888888777888888888988876542 33333110 00 1334
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
.....++.+...++||+++.+.+.+.. .+ +.+.+++ ++||. +|++.....+ .+++.|-
T Consensus 43 ~~~~~~~~l~~~~vdgiIi~~~~~~~~---~~-~~l~~~~--ipvV~----~~~~~~~~~~-~~v~~d~ 100 (265)
T cd06299 43 TENRYLDNLLSQRVDGIIVVPHEQSAE---QL-EDLLKRG--IPVVF----VDREITGSPI-PFVTSDP 100 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCChH---HH-HHHHhCC--CCEEE----EecccCCCCC-CEEEECc
Confidence 556778889999999999998765432 23 4444455 45664 3555443222 2455553
No 166
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=37.24 E-value=1.3e+02 Score=27.85 Aligned_cols=48 Identities=17% Similarity=0.041 Sum_probs=21.7
Q ss_pred hccccccCCceecccCCCCCCChHHHHHHHHHHHHcCC-CEEEEecCchh
Q 008310 148 IYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDL-DGLVVIGGDDS 196 (570)
Q Consensus 148 v~~~~n~GG~~~lGs~R~k~~~~e~~~~~~~~l~k~~I-d~LviIGGddS 196 (570)
++.....+. ++++=|-..-.+.+.+..+++.|++.+. +-.|++||.=.
T Consensus 46 v~aa~e~~a-dii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~ 94 (132)
T TIGR00640 46 ARQAVEADV-HVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIP 94 (132)
T ss_pred HHHHHHcCC-CEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 333333433 3444333322234455555555555554 34455555443
No 167
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=37.07 E-value=2.9e+02 Score=29.12 Aligned_cols=51 Identities=16% Similarity=0.061 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccC
Q 008310 173 FKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDG 225 (570)
Q Consensus 173 ~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDN 225 (570)
+..++...++.+.+.+|..||-.+|+. ..||-+++..|++ .+|.+|.+++.
T Consensus 52 ~~~~l~~a~~~g~~~vvt~g~s~gN~g-~alA~~a~~~G~~-~~i~vp~~~~~ 102 (331)
T PRK03910 52 LEFLLADALAQGADTLITAGAIQSNHA-RQTAAAAAKLGLK-CVLLLENPVPT 102 (331)
T ss_pred HHHHHHHHHHcCCCEEEEcCcchhHHH-HHHHHHHHHhCCc-EEEEEcCCCCc
Confidence 344455566778899998776666655 3466677778887 55668988774
No 168
>PRK11096 ansB L-asparaginase II; Provisional
Probab=36.54 E-value=86 Score=33.87 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=32.9
Q ss_pred ChHHHHHHHHHHHH--cCCCEEEEecCchhHHHHHHHHHHHhcCC
Q 008310 169 TPEQFKQAEETVKK--LDLDGLVVIGGDDSNTNACLLAENFRSKD 211 (570)
Q Consensus 169 ~~e~~~~~~~~l~k--~~Id~LviIGGddS~t~A~~Lae~~~~~g 211 (570)
+++++.++.+.+++ .+.||+||.-|.|||...+.+-.++...+
T Consensus 83 t~~~~~~l~~~i~~~~~~~dGiVVtHGTDTme~tA~~Ls~~~~~~ 127 (347)
T PRK11096 83 NDEVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVKCD 127 (347)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCchHHHHHHHHHHhccCC
Confidence 67788788777766 57999999999999988776655554333
No 169
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.50 E-value=1.6e+02 Score=28.76 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
+...+.++.+...++||+++.+.+.+... .+ +.+.+.| ++||.+
T Consensus 42 ~~~~~~i~~~~~~~vdgiii~~~~~~~~~--~~-~~~~~~~--ipvV~~ 85 (268)
T cd06289 42 ERQEQLLSTMLEHGVAGIILCPAAGTSPD--LL-KRLAESG--IPVVLV 85 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCccHH--HH-HHHHhcC--CCEEEE
Confidence 44566778888899999999987654322 22 3333445 457765
No 170
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=36.20 E-value=81 Score=34.65 Aligned_cols=55 Identities=27% Similarity=0.303 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCC
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 226 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 226 (570)
.+++.+++.|.+.++|.+|||||-.|. |...|++-+++.|.++-.|-=+.=||-+
T Consensus 275 ~~RQ~A~~~La~~~vD~miVVGG~nSS-NT~rL~eia~~~g~~ty~Ie~~~eL~~~ 329 (387)
T PRK13371 275 QERQDAMFSLVEEPLDLMVVIGGYNSS-NTTHLQEIAIERGIPSYHIDSPERILSG 329 (387)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCc-cHHHHHHHHHhcCCCEEEECCHHHcCCc
Confidence 345556666655679999999999885 4577888888877777777767767653
No 171
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=36.14 E-value=84 Score=35.87 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHcC---CCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLD---LDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~---Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+..+++.+.+.+.+ -|.+|-|||--.++.|..+|--+. + ++++|.||-|+
T Consensus 251 sl~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y~-r--Gi~~i~vPTTl 305 (542)
T PRK14021 251 TIEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATWM-R--GIRYVNCPTSL 305 (542)
T ss_pred CHHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHHH-c--CCCEEEeCChH
Confidence 4567788888888884 899999999888888888876332 2 46799999886
No 172
>PRK13059 putative lipid kinase; Reviewed
Probab=35.80 E-value=66 Score=33.46 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=32.5
Q ss_pred HcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCC
Q 008310 182 KLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 228 (570)
Q Consensus 182 k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 228 (570)
+.+.|.+|++|||||...+. ..+.+.+.++++--+|.==-||+.
T Consensus 54 ~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfA 97 (295)
T PRK13059 54 DESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFA 97 (295)
T ss_pred hcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHH
Confidence 46789999999999977653 233334556778889987778876
No 173
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=35.79 E-value=75 Score=32.93 Aligned_cols=54 Identities=17% Similarity=0.179 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHH-HHHHHHhcCCCCceEEEeeccccCCCCC
Q 008310 174 KQAEETVKKLDLDGLVVIGGDDSNTNAC-LLAENFRSKDMKTRVIGCPKTIDGDLKC 229 (570)
Q Consensus 174 ~~~~~~l~k~~Id~LviIGGddS~t~A~-~Lae~~~~~g~~i~VIgVPKTIDNDL~~ 229 (570)
...++.+.+.+.|.+|++|||||...+. -|.+. ..+..+++--+|.==-||+.-
T Consensus 42 ~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~--~~~~~~~lgiiP~GTgNdfAr 96 (293)
T TIGR03702 42 QRYVAEALALGVSTVIAGGGDGTLREVATALAQI--RDDAAPALGLLPLGTANDFAT 96 (293)
T ss_pred HHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhh--CCCCCCcEEEEcCCchhHHHH
Confidence 3444444467789999999999977654 33321 113345677789888888863
No 174
>PLN02327 CTP synthase
Probab=35.66 E-value=43 Score=38.36 Aligned_cols=69 Identities=23% Similarity=0.360 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhH--HHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHH
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSN--TNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEV 248 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~--t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~ 248 (570)
+.+..+.+.+ .+.|++++-||.|+- ......++|+++++ +++.|| |.|+.-++-.++.-
T Consensus 351 ~~y~~~~~~L--~~~DGIvvpGGfG~~~~~G~i~ai~~are~~--iP~LGI---------------ClGmQl~viefaRn 411 (557)
T PLN02327 351 DAYAAAWKLL--KGADGILVPGGFGDRGVEGKILAAKYARENK--VPYLGI---------------CLGMQIAVIEFARS 411 (557)
T ss_pred chhhhhHHhh--ccCCEEEeCCCCCCcccccHHHHHHHHHHcC--CCEEEE---------------cHHHHHHHHHHHHh
Confidence 4455565554 567899999997442 23333446655444 457773 99999999999987
Q ss_pred HHHHHHHhhhc
Q 008310 249 IGNVMTDARSS 259 (570)
Q Consensus 249 I~ni~~Da~S~ 259 (570)
+-.+ .||.|+
T Consensus 412 vlG~-~dAnS~ 421 (557)
T PLN02327 412 VLGL-KDANST 421 (557)
T ss_pred hcCC-cCCCcc
Confidence 7777 588886
No 175
>PRK05637 anthranilate synthase component II; Provisional
Probab=35.65 E-value=61 Score=32.21 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=37.2
Q ss_pred HHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHH
Q 008310 180 VKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFS 246 (570)
Q Consensus 180 l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~s 246 (570)
+.+.+.|++|+-||-++-..+....+.++...-+++|.|| |+|+...+..+.
T Consensus 40 l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI---------------ClG~Qlla~alG 91 (208)
T PRK05637 40 ILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI---------------CLGFQALLEHHG 91 (208)
T ss_pred HHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE---------------cHHHHHHHHHcC
Confidence 4467899999999999998875544444322224678874 999998887763
No 176
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=35.18 E-value=5.4e+02 Score=26.85 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=60.2
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+..+||++..+-..|--+.++.|+.+.+++. +..+. +.++. .
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~--g~~l~---------------------------------i~~~~---~ 65 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESL--GAKVF---------------------------------VQSAN---G 65 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHc--CCEEE---------------------------------EECCC---C
Confidence 4689999999999999999999999887643 33322 11111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
++++..+.++.+...++||+++.+.+.+.. ...+ +.+.+.+ ++||.+-..+
T Consensus 66 ~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~-~~~l-~~~~~~~--iPvV~id~~~ 116 (330)
T PRK10355 66 NEETQMSQIENMINRGVDVLVIIPYNGQVL-SNVI-KEAKQEG--IKVLAYDRMI 116 (330)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChhhH-HHHH-HHHHHCC--CeEEEECCCC
Confidence 345566778888899999999998653311 1223 2333344 5677764433
No 177
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=34.86 E-value=54 Score=35.45 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=69.1
Q ss_pred EEecCCCCch-hhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCc-eecccCCCCCCChHH
Q 008310 95 VVLSGGQAPG-GHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGF-DMLCSGRDKIETPEQ 172 (570)
Q Consensus 95 Iv~sGG~aPG-~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~-~~lGs~R~k~~~~e~ 172 (570)
|+++||-+.| ++.+ .+.+++++..++..++|.-+ .. +...-++. .-++..+.- .|+ ..+..- +.-..-
T Consensus 8 i~i~aGgtsGhi~pa--al~~~l~~~~~~~~~~g~gg-~~--m~~~g~~~-~~~~~~l~v-~G~~~~l~~~---~~~~~~ 77 (385)
T TIGR00215 8 IALVAGEASGDILGA--GLRQQLKEHYPNARFIGVAG-PR--MAAEGCEV-LYSMEELSV-MGLREVLGRL---GRLLKI 77 (385)
T ss_pred EEEEeCCccHHHHHH--HHHHHHHhcCCCcEEEEEcc-HH--HHhCcCcc-ccChHHhhh-ccHHHHHHHH---HHHHHH
Confidence 3455555555 5555 88888887777888888643 21 11111110 001111111 232 011100 001234
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHHHH
Q 008310 173 FKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNV 252 (570)
Q Consensus 173 ~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ni 252 (570)
+.++.+.+++.+.|.+|.+||-+-+-. ++...+..|+++ |+.||-.+ | +.. .-+.+.++..++.+
T Consensus 78 ~~~~~~~l~~~kPd~vi~~g~~~~~~~---~a~aa~~~gip~-v~~i~P~~-w---------aw~-~~~~r~l~~~~d~v 142 (385)
T TIGR00215 78 RKEVVQLAKQAKPDLLVGIDAPDFNLT---KELKKKDPGIKI-IYYISPQV-W---------AWR-KWRAKKIEKATDFL 142 (385)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCccHH---HHHHHhhCCCCE-EEEeCCcH-h---------hcC-cchHHHHHHHHhHh
Confidence 668889999999999999998553322 223333345542 33344322 1 111 22377777777777
Q ss_pred HHHh
Q 008310 253 MTDA 256 (570)
Q Consensus 253 ~~Da 256 (570)
..-.
T Consensus 143 ~~~~ 146 (385)
T TIGR00215 143 LAIL 146 (385)
T ss_pred hccC
Confidence 5443
No 178
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=34.67 E-value=74 Score=35.64 Aligned_cols=52 Identities=25% Similarity=0.275 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecccc
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTID 224 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTID 224 (570)
+++.++..|-+..+|.+|||||-.|. |...|+|-+.+.|.++--|-=|.-|+
T Consensus 350 eRQdA~~~L~~~~vDlmiVVGG~NSS-NT~~L~eIa~~~g~~sy~Ie~~~eI~ 401 (460)
T PLN02821 350 ERQDAMYKLVEEKLDLMLVVGGWNSS-NTSHLQEIAEHKGIPSYWIDSEERIG 401 (460)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCCc-cHHHHHHHHHHhCCCEEEECCHHHcC
Confidence 34444555544579999999999885 44668888887787776676677666
No 179
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=34.57 E-value=63 Score=29.47 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCC
Q 008310 174 KQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 226 (570)
Q Consensus 174 ~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 226 (570)
-.+++.....++|.+|++.||+-+..+. +.++++|.++-|++.+.....+
T Consensus 89 ~d~~~~~~~~~~d~ivLvSgD~Df~~~i---~~lr~~G~~V~v~~~~~~~s~~ 138 (149)
T cd06167 89 IDALELAYKRRIDTIVLVSGDSDFVPLV---ERLRELGKRVIVVGFEAKTSRE 138 (149)
T ss_pred HHHHHHhhhcCCCEEEEEECCccHHHHH---HHHHHcCCEEEEEccCccChHH
Confidence 3455666667999999999999777664 4455579888888877333333
No 180
>PLN02735 carbamoyl-phosphate synthase
Probab=34.53 E-value=3.2e+02 Score=34.18 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCEEEE-ecCchhHHHHHHHHHHHhcCC-------CCceEEEe
Q 008310 173 FKQAEETVKKLDLDGLVV-IGGDDSNTNACLLAENFRSKD-------MKTRVIGC 219 (570)
Q Consensus 173 ~~~~~~~l~k~~Id~Lvi-IGGddS~t~A~~Lae~~~~~g-------~~i~VIgV 219 (570)
.+.+++.|++.++|+++. +||+-.+.-|..+.+.+.+++ .++.++|-
T Consensus 638 ~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~ 692 (1102)
T PLN02735 638 VEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGT 692 (1102)
T ss_pred HHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECC
Confidence 778899999999999996 888888888888888766543 14566663
No 181
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=34.39 E-value=86 Score=35.05 Aligned_cols=90 Identities=24% Similarity=0.371 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhH--HHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSN--TNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFS 246 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~--t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~s 246 (570)
++..+.++.+.++ .-|+++|-||.|+- .+.-.-++|.++++ ++..| .|+|..-|+=-+|
T Consensus 350 ~~~~~~~aW~~l~--~adGilvPGGFG~RGveG~i~Aak~ARen~--iP~LG---------------iCLGmQ~AvIEfa 410 (585)
T KOG2387|consen 350 DPRKYHAAWQKLK--SADGILVPGGFGDRGVEGKILAAKWARENK--IPFLG---------------ICLGMQLAVIEFA 410 (585)
T ss_pred ChhHHHHHHHHhc--cCCeEEeCCcccccchhHHHHHHHHHHhcC--CCeEe---------------eehhhhHHHHHHH
Confidence 4566788887774 57999999999973 33333455555554 34555 3999999999999
Q ss_pred HHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchh
Q 008310 247 EVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIA 296 (570)
Q Consensus 247 e~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~ 296 (570)
..|-.+ .||.|+.-. . ++ .+|-++++||.-.
T Consensus 411 RnvLg~-~dAnStEF~----------p-----~~---~~~vVi~MPE~~~ 441 (585)
T KOG2387|consen 411 RNVLGL-KDANSTEFD----------P-----ET---KNPVVIFMPEHNK 441 (585)
T ss_pred HHhhCC-CCCCccccC----------C-----CC---CCcEEEECcCCCc
Confidence 888888 688886421 0 00 4667777888753
No 182
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=32.98 E-value=40 Score=35.66 Aligned_cols=80 Identities=21% Similarity=0.255 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCC-CCCCC-CCCCCChhhHHHHHHHH
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD-LKCKD-VPISFGFDTACKTFSEV 248 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND-L~~~~-ie~s~GFdTA~k~~se~ 248 (570)
.+++.++..|-+ ..|.+|||||-.|. |..+|++-+++.+.++-.|-=+.=||-+ +.+.. +-.|=|-.|=-..+-+.
T Consensus 198 ~~RQ~a~~~La~-~vD~miVVGg~~Ss-NT~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 198 QNRQEAVKELAP-QADLVIVVGSKNSS-NSNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCc-cHHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 345555555533 79999999999985 4467888888777676677767666633 33221 22244555555555555
Q ss_pred HHHH
Q 008310 249 IGNV 252 (570)
Q Consensus 249 I~ni 252 (570)
+..|
T Consensus 276 ~~~l 279 (298)
T PRK01045 276 IARL 279 (298)
T ss_pred HHHH
Confidence 5444
No 183
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=32.61 E-value=77 Score=33.56 Aligned_cols=66 Identities=29% Similarity=0.474 Sum_probs=47.5
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+...||++..--..|=-..++.|+-+.+... |..+ +|..+..
T Consensus 57 ~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~--gy~~---------------------------------~l~~~~~--- 98 (333)
T COG1609 57 RTKTIGLVVPDITNPFFAEILKGIEEAAREA--GYSL---------------------------------LLANTDD--- 98 (333)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHc--CCEE---------------------------------EEECCCC---
Confidence 4568888877666677777788887776542 2222 3344433
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEec
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIG 192 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIG 192 (570)
+++..+.+++.+...++||+|+.|
T Consensus 99 ~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 99 DPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec
Confidence 567788999999999999999999
No 184
>CHL00101 trpG anthranilate synthase component 2
Probab=32.08 E-value=52 Score=31.95 Aligned_cols=51 Identities=14% Similarity=0.295 Sum_probs=32.3
Q ss_pred HHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHH
Q 008310 180 VKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTF 245 (570)
Q Consensus 180 l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~ 245 (570)
+.+++.|+||+.||.++-.......+..+....+++|+|| |+|+.-.+..+
T Consensus 39 ~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGI---------------ClG~Qlla~~~ 89 (190)
T CHL00101 39 IKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGV---------------CLGHQSIGYLF 89 (190)
T ss_pred HhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEE---------------chhHHHHHHHh
Confidence 4557899999999999876533222211111224667774 99998777643
No 185
>PRK00861 putative lipid kinase; Reviewed
Probab=31.97 E-value=83 Score=32.63 Aligned_cols=57 Identities=11% Similarity=0.173 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 174 KQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 174 ~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
.+.++.....+.|.+|++|||||...+. ..+... ++++--+|.===||+. .++|...
T Consensus 47 ~~~a~~~~~~~~d~vv~~GGDGTl~evv---~~l~~~--~~~lgviP~GTgNdfA-----r~lgi~~ 103 (300)
T PRK00861 47 DQLAQEAIERGAELIIASGGDGTLSAVA---GALIGT--DIPLGIIPRGTANAFA-----AALGIPD 103 (300)
T ss_pred HHHHHHHHhcCCCEEEEECChHHHHHHH---HHHhcC--CCcEEEEcCCchhHHH-----HHcCCCC
Confidence 4444445567789999999999977654 222222 4567778876677776 3666654
No 186
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.93 E-value=2.8e+02 Score=25.49 Aligned_cols=64 Identities=22% Similarity=0.336 Sum_probs=42.7
Q ss_pred EEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhcCCeeEEE
Q 008310 187 GLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFI 266 (570)
Q Consensus 187 ~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ni~~Da~S~~k~~~fI 266 (570)
.+++|=+|+.-..-..|++--+- + .+++.|=|+-|++++. |+ ..++++|....-+.++ .++
T Consensus 2 t~vliR~Ds~~Kil~ALaDleRy-a-giki~gkPrii~p~~a----------D~---~~~~ilGe~R~k~~~a----a~a 62 (125)
T COG1844 2 TIVLIRADSYDKILTALADLERY-A-GIKIRGKPRIIPPELA----------DE---ILSSILGEVRKKCKVA----AVA 62 (125)
T ss_pred eEEEEecCcHHHHHHHHHHHHHh-c-CceeecCCcccChhhH----------HH---HHHHHHHHHhcccchh----hee
Confidence 47888888887776777764332 3 4789999999999986 33 4566667664444332 355
Q ss_pred Eec
Q 008310 267 RLM 269 (570)
Q Consensus 267 evM 269 (570)
||-
T Consensus 63 ~v~ 65 (125)
T COG1844 63 EVE 65 (125)
T ss_pred eec
Confidence 553
No 187
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=31.83 E-value=1.1e+02 Score=28.04 Aligned_cols=90 Identities=20% Similarity=0.293 Sum_probs=55.8
Q ss_pred CEEEEEeCCcccccCC----------CEEECChhhhccccccCCceecccCCCCCCChHHHHHHHHHHHHcCCCEEEEec
Q 008310 123 SKLYGFRGGPAGIMKC----------KFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIG 192 (570)
Q Consensus 123 ~~v~Gf~~G~~GLl~~----------~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~~~~~~~~l~k~~Id~LviIG 192 (570)
.-++++=+|..=+.+. ++=-++++..+.|++.|- .++-.. .| +.-+++++++.+.+++.+-++++|
T Consensus 17 ~~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~-~~~~~p-~k--D~TD~e~Al~~~~~~~~~~i~v~G 92 (123)
T PF04263_consen 17 DFIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGV-EIIHFP-EK--DYTDLEKALEYAIEQGPDEIIVLG 92 (123)
T ss_dssp SEEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTT-EEEEE--ST--TS-HHHHHHHHHHHTTTSEEEEES
T ss_pred CEEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhcc-ceeccc-cc--ccCHHHHHHHHHHHCCCCEEEEEe
Confidence 3455555555444433 333455666667777744 455444 33 445799999999999999999999
Q ss_pred Cch-----hHHHHHHHHHHHhcCCCCceEE
Q 008310 193 GDD-----SNTNACLLAENFRSKDMKTRVI 217 (570)
Q Consensus 193 Gdd-----S~t~A~~Lae~~~~~g~~i~VI 217 (570)
+-| ++.+...|.++. +.++++.+|
T Consensus 93 a~GgR~DH~lanl~~l~~~~-~~~~~i~li 121 (123)
T PF04263_consen 93 ALGGRFDHTLANLNLLYKYK-KRGIKIVLI 121 (123)
T ss_dssp -SSSSHHHHHHHHHHHHHHH-TTTSEEEEE
T ss_pred cCCCcHHHHHHHHHHHHHHH-HcCCeEEEE
Confidence 965 566777777664 456554443
No 188
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=31.60 E-value=67 Score=30.65 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 222 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 222 (570)
++++.+.+.++++++.+.+.+|.+-|-. +.-+-.++-. ...+|||||-.
T Consensus 39 R~p~~l~~~~~~~~~~~~~viIa~AG~~-a~Lpgvva~~-----t~~PVIgvP~~ 87 (150)
T PF00731_consen 39 RTPERLLEFVKEYEARGADVIIAVAGMS-AALPGVVASL-----TTLPVIGVPVS 87 (150)
T ss_dssp TSHHHHHHHHHHTTTTTESEEEEEEESS---HHHHHHHH-----SSS-EEEEEE-
T ss_pred CCHHHHHHHHHHhccCCCEEEEEECCCc-ccchhhheec-----cCCCEEEeecC
Confidence 3678888888888888888777766653 3334445443 36789999953
No 189
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=31.29 E-value=3.4e+02 Score=33.76 Aligned_cols=48 Identities=25% Similarity=0.486 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCCCEEEE-ecCchhHHHHHHHHHHHhcCCCCceEEEe-eccccC
Q 008310 172 QFKQAEETVKKLDLDGLVV-IGGDDSNTNACLLAENFRSKDMKTRVIGC-PKTIDG 225 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~Lvi-IGGddS~t~A~~Lae~~~~~g~~i~VIgV-PKTIDN 225 (570)
..+.+.+.|++.++|++++ +||+-... +++.+.+.| ++++|- |.+|+.
T Consensus 617 ~~e~v~~i~~~e~~dgVi~~~g~~~~~~----la~~le~~G--i~ilg~s~~ai~~ 666 (1066)
T PRK05294 617 TLEDVLEIIEKEKPKGVIVQFGGQTPLK----LAKALEAAG--VPILGTSPDAIDL 666 (1066)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCchhHHH----HHHHHHHCC--CceeCCCHHHHHH
Confidence 3677888899999999998 67776553 445555455 457775 467653
No 190
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=31.20 E-value=4.7e+02 Score=24.92 Aligned_cols=84 Identities=23% Similarity=0.323 Sum_probs=52.7
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
+||++......|-...++.|+.++++.. +.++.- .... .+++
T Consensus 1 ~i~~v~~~~~~~~~~~~~~g~~~~~~~~--g~~~~~---------------------------------~~~~---~~~~ 42 (264)
T cd06267 1 TIGVIVPDISNPFFAELLRGIEEAAREA--GYSVLL---------------------------------CNSD---EDPE 42 (264)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHc--CCEEEE---------------------------------EcCC---CCHH
Confidence 4788888888899999999998887541 122110 0000 1233
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
.....++.+...++|++++.+.+.+... + ..+.+.+ ++||.+
T Consensus 43 ~~~~~~~~~~~~~~d~iii~~~~~~~~~---~-~~~~~~~--ipvv~~ 84 (264)
T cd06267 43 KEREALELLLSRRVDGIILAPSRLDDEL---L-EELAALG--IPVVLV 84 (264)
T ss_pred HHHHHHHHHHHcCcCEEEEecCCcchHH---H-HHHHHcC--CCEEEe
Confidence 4455566777889999999988876444 2 2333445 456655
No 191
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=31.02 E-value=45 Score=32.31 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=33.1
Q ss_pred HHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHH
Q 008310 180 VKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTF 245 (570)
Q Consensus 180 l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~ 245 (570)
+++++.|+||+-||.++........+.++.-..+++|+|| |+|+..-+..+
T Consensus 39 ~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGI---------------C~G~Qlla~~~ 89 (191)
T PRK06774 39 IEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGV---------------CLGHQALGQAF 89 (191)
T ss_pred HHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEE---------------CHHHHHHHHHh
Confidence 4567899999999998875542222222211224678874 99998776654
No 192
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=30.94 E-value=1e+02 Score=32.55 Aligned_cols=50 Identities=22% Similarity=0.407 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 169 TPEQFKQAEETVKKL--DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~--~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
+++++.++.+.+++. +.|++||.-|.|||...+.+-..+... .+.+||-.
T Consensus 55 t~~~~~~la~~i~~~~~~~~GvVVtHGTDTme~tA~~Ls~~l~~-l~kPVVlT 106 (313)
T PF00710_consen 55 TPEDWLELARAIQAALDDYDGVVVTHGTDTMEETAFFLSLLLDN-LDKPVVLT 106 (313)
T ss_dssp -HHHHHHHHHHHHHHHTTCSEEEEE--STTHHHHHHHHHHHEES--SSEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCeEEEecCchHHHHHHHHHHHHhcC-CCCCEEEe
Confidence 567777766666655 699999999999999866655555443 23455543
No 193
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=30.77 E-value=5.1e+02 Score=25.14 Aligned_cols=85 Identities=21% Similarity=0.175 Sum_probs=53.2
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
.||||+.+-+.|-...++.|+-+.+++. +..+.-+. +.. .+++
T Consensus 1 ~i~vi~~~~~~~~~~~~~~gi~~~~~~~--~~~~~~~~--------------------------------~~~---~~~~ 43 (264)
T cd01574 1 TIGVVTTDLALHGPSSTLAAIESAAREA--GYAVTLSM--------------------------------LAE---ADEE 43 (264)
T ss_pred CEEEEeCCCCcccHHHHHHHHHHHHHHC--CCeEEEEe--------------------------------CCC---CchH
Confidence 3889998888888888899988887653 33332110 110 0123
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
...+.++.+...++||+++.+-+++.. + +.+ +.+.| ++||.+
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~~~~~~-~--~~~-~~~~~--ipvv~~ 85 (264)
T cd01574 44 ALRAAVRRLLAQRVDGVIVNAPLDDAD-A--ALA-AAPAD--VPVVFV 85 (264)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCChH-H--HHH-HHhcC--CCEEEE
Confidence 456677888899999999998765543 2 222 23445 456655
No 194
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=30.73 E-value=1.1e+02 Score=33.36 Aligned_cols=39 Identities=31% Similarity=0.279 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENF 207 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~ 207 (570)
|...+.++++..++.+.|.+|-|||--.+++|...+-|.
T Consensus 112 tv~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~A 150 (465)
T KOG3857|consen 112 TVGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALLA 150 (465)
T ss_pred chhhHHHHHHHHHhcccceEEEEcCcchhhhHHHHHHhh
Confidence 456688999999999999999999998888877665443
No 195
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=30.61 E-value=70 Score=33.60 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=30.3
Q ss_pred HHhhhcCCeeEEEEecCC-CCcHHHHHhhhhcCCcEEEE
Q 008310 254 TDARSSGKYYHFIRLMGR-AASHITLECALQTHPNIAII 291 (570)
Q Consensus 254 ~Da~S~~k~~~fIevMGR-~ag~lAle~aLat~pnivlI 291 (570)
...+..++.+.||=+||- |.||++|--.-..+.+++++
T Consensus 15 ~~~~~~~~~igfVPTMGaLHeGHlsLi~~A~~~~d~vVV 53 (280)
T PF02569_consen 15 RAWRKAGKTIGFVPTMGALHEGHLSLIRRARAENDVVVV 53 (280)
T ss_dssp HHHHHTTSSEEEEEE-SS--HHHHHHHHHHHHHSSEEEE
T ss_pred HHHHHcCCeEEEECCCchhhHHHHHHHHHHHhCCCEEEE
Confidence 455556788999999997 89999998888888999887
No 196
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=30.26 E-value=2.1e+02 Score=28.22 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=53.5
Q ss_pred CEEEEEeCCcccccCC---------CEEECChhhhccccccCCceecccCCCCCCChHHHHHHHHHHHHcCCCEEEEecC
Q 008310 123 SKLYGFRGGPAGIMKC---------KFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGG 193 (570)
Q Consensus 123 ~~v~Gf~~G~~GLl~~---------~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~~~~~~~~l~k~~Id~LviIGG 193 (570)
..++++=+|..=+++. ++--++++..+.|... |..++-....| +.-++++|++.+.+++.+-++++|+
T Consensus 19 ~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~-~~~~~~~~~eK--D~TD~e~Al~~~~~~~~~~i~i~Ga 95 (203)
T TIGR01378 19 DLVIAADGGANHLLKLGLTPDLIVGDFDSIDEEELDFYKKA-GVKIIVFPPEK--DTTDLELALKYALERGADEITILGA 95 (203)
T ss_pred CEEEEEChHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHHc-CCceEEcCCCC--CCCHHHHHHHHHHHCCCCEEEEEcC
Confidence 3678888887665543 3334555556656543 44344333333 3457999999999999999999998
Q ss_pred c-----hhHHHHHHHHHH
Q 008310 194 D-----DSNTNACLLAEN 206 (570)
Q Consensus 194 d-----dS~t~A~~Lae~ 206 (570)
- -++.+...|..+
T Consensus 96 ~GgR~DH~lani~~L~~~ 113 (203)
T TIGR01378 96 TGGRLDHTLANLNLLLEY 113 (203)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 4 456677777665
No 197
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=29.91 E-value=4.6e+02 Score=25.35 Aligned_cols=99 Identities=22% Similarity=0.313 Sum_probs=59.4
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChHH
Q 008310 93 IGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQ 172 (570)
Q Consensus 93 IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~ 172 (570)
||||...-+.|-...++.|+.++++.. +..+.-+ .. . .+++.
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~~--g~~~~~~---------------------------------~~--~-~~~~~ 43 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRAH--GYQVLVC---------------------------------NS--D-NDPEK 43 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHc--CCEEEEE---------------------------------cC--C-CCHHH
Confidence 788887778888999999998887643 3333210 00 0 12334
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 173 FKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 173 ~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
....++.+...++|++++.+.+.... .+ +.+.+.+ ++||.+ |.++....+ .++|.|-
T Consensus 44 ~~~~~~~l~~~~~dgiii~~~~~~~~---~l-~~~~~~~--ipvV~~----~~~~~~~~~-~~v~~d~ 100 (267)
T cd06283 44 EKEYLESLLAYQVDGLIVNPTGNNKE---LY-QRLAKNG--KPVVLV----DRKIPELGV-DTVTLDN 100 (267)
T ss_pred HHHHHHHHHHcCcCEEEEeCCCCChH---HH-HHHhcCC--CCEEEE----cCCCCCCCC-CEEEecc
Confidence 45667778889999999998764322 23 3334444 556654 555443222 3677654
No 198
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=29.90 E-value=3.2e+02 Score=25.34 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHHcC---CCEEEEecC-chhHHHHHHHHHHHhcCCCC
Q 008310 169 TPEQFKQAEETVKKLD---LDGLVVIGG-DDSNTNACLLAENFRSKDMK 213 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~---Id~LviIGG-ddS~t~A~~Lae~~~~~g~~ 213 (570)
+.+.+.++++.+++.+ +...+++|= .++......+.+++.+.+..
T Consensus 134 ~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 182 (216)
T smart00729 134 TVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKELGPD 182 (216)
T ss_pred CHHHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 4578888899999999 455566663 36788888888888777754
No 199
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=29.72 E-value=36 Score=30.65 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=25.9
Q ss_pred HHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCC
Q 008310 175 QAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 226 (570)
Q Consensus 175 ~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 226 (570)
.+.+.+.....|.+|++-||+-+..+. +.++++|.++-|++.|.....+
T Consensus 86 d~~~~~~~~~~d~ivLvSgD~Df~~~v---~~l~~~g~~V~v~~~~~~~s~~ 134 (146)
T PF01936_consen 86 DILELAYENPPDTIVLVSGDSDFAPLV---RKLRERGKRVIVVGAEDSASEA 134 (146)
T ss_dssp HHHHHG--GG-SEEEEE---GGGHHHH---HHHHHH--EEEEEE-GGGS-HH
T ss_pred HHHHHhhccCCCEEEEEECcHHHHHHH---HHHHHcCCEEEEEEeCCCCCHH
Confidence 334445445679999999998876654 4556679888888865444433
No 200
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=29.71 E-value=52 Score=26.09 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHH
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNAC 201 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~ 201 (570)
+..++.+.+++++|| +..||+.|+..|+
T Consensus 11 ~~p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 11 EDPRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred HChHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 456778999999999 5899999988775
No 201
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=29.35 E-value=1.1e+02 Score=27.51 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=30.1
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCC---ceEEEeeccccCCCCC
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMK---TRVIGCPKTIDGDLKC 229 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~---i~VIgVPKTIDNDL~~ 229 (570)
.-|.+|++|||||...+. ..+.+...+ +++.-+|.==-||+..
T Consensus 49 ~~d~vvv~GGDGTi~~vv---n~l~~~~~~~~~~plgiiP~GTgNdfar 94 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVL---NALDKRELPLPEPPVAVLPLGTGNDLAR 94 (124)
T ss_pred cCCEEEEEccccHHHHHH---HHHHhcccccCCCcEEEeCCCChhHHHH
Confidence 457999999999987764 223322322 6788889877888863
No 202
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=29.24 E-value=2.8e+02 Score=34.50 Aligned_cols=95 Identities=22% Similarity=0.146 Sum_probs=54.0
Q ss_pred CCccEEEEEecCCC----CchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccC
Q 008310 88 NKSLKIGVVLSGGQ----APGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSG 163 (570)
Q Consensus 88 ~~~~~IGIv~sGG~----aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~ 163 (570)
...++|.|+-||+. |+=.-..-..+.++|+. .|.+++.+-.-+.....+. ...+.
T Consensus 5 ~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e--~G~~vi~v~~np~~~~~d~------~~ad~------------- 63 (1068)
T PRK12815 5 TDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKE--EGYQVVLVNPNPATIMTDP------APADT------------- 63 (1068)
T ss_pred CCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHH--cCCEEEEEeCCcchhhcCc------ccCCe-------------
Confidence 45689999999854 33233333445555554 3789998864432222111 00000
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCEEEE-ecCchhHHHHHHHHH
Q 008310 164 RDKIETPEQFKQAEETVKKLDLDGLVV-IGGDDSNTNACLLAE 205 (570)
Q Consensus 164 R~k~~~~e~~~~~~~~l~k~~Id~Lvi-IGGddS~t~A~~Lae 205 (570)
. .+ .+-..+.+.+.|++.++|+++. +||......+..|++
T Consensus 64 ~-y~-ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~ 104 (1068)
T PRK12815 64 V-YF-EPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHE 104 (1068)
T ss_pred e-EE-CCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHh
Confidence 0 00 1112456777789999999985 588877777666654
No 203
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.02 E-value=5.5e+02 Score=25.05 Aligned_cols=87 Identities=13% Similarity=0.072 Sum_probs=53.8
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
.||||+..-..|-...++.|+-+.++. .|..+.-+. +. .+++
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~--~g~~~~~~~---------------------------------~~---~~~~ 42 (273)
T cd06292 1 LVGLLVPELSNPIFPAFAEAIEAALAQ--YGYTVLLCN---------------------------------TY---RGGV 42 (273)
T ss_pred CEEEEeCCCcCchHHHHHHHHHHHHHH--CCCEEEEEe---------------------------------CC---CChH
Confidence 378898888888888899999888764 233332100 00 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchh-H-HHHHHHHHHHhcCCCCceEEEe
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDS-N-TNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS-~-t~A~~Lae~~~~~g~~i~VIgV 219 (570)
...+.++.+...++||+++.+.... . ..+..+ +.+.+.| ++||.+
T Consensus 43 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i-~~~~~~~--ipvV~i 89 (273)
T cd06292 43 SEADYVEDLLARGVRGVVFISSLHADTHADHSHY-ERLAERG--LPVVLV 89 (273)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHH-HHHHhCC--CCEEEE
Confidence 5567789999999999999985422 2 122233 3334445 456665
No 204
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=28.89 E-value=2.9e+02 Score=25.14 Aligned_cols=92 Identities=15% Similarity=0.220 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHhcCCC--EEEEEeCCcccccCCCEEECChhh-------hccccc-cCCceecccCCCCCCChHHHHH
Q 008310 106 HNVIAGIFDYLQERTKGS--KLYGFRGGPAGIMKCKFVELSSEF-------IYPYRN-QGGFDMLCSGRDKIETPEQFKQ 175 (570)
Q Consensus 106 nnvI~gl~~~l~~~~~~~--~v~Gf~~G~~GLl~~~~~eLt~~~-------v~~~~n-~GG~~~lGs~R~k~~~~e~~~~ 175 (570)
..+...+...++.+.++. .|+.|-....-+. ..++..+++. |..+.. .||+++. .-++.
T Consensus 18 ~~~k~al~~~l~~L~~~d~fnii~f~~~~~~~~-~~~~~~~~~~~~~a~~~I~~~~~~~G~t~l~----------~aL~~ 86 (155)
T PF13768_consen 18 ELVKDALRAILRSLPPGDRFNIIAFGSSVRPLF-PGLVPATEENRQEALQWIKSLEANSGGTDLL----------AALRA 86 (155)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEEeCCEeeEcc-hhHHHHhHHHHHHHHHHHHHhcccCCCccHH----------HHHHH
Confidence 344444444444555555 4555555444444 3355555442 333333 5665332 22444
Q ss_pred HHHHH-HHcCCCEEEEecCchh-HHHHHHHHHHHhc
Q 008310 176 AEETV-KKLDLDGLVVIGGDDS-NTNACLLAENFRS 209 (570)
Q Consensus 176 ~~~~l-~k~~Id~LviIGGddS-~t~A~~Lae~~~~ 209 (570)
+++.. .......++++. ||. ..+...+.++..+
T Consensus 87 a~~~~~~~~~~~~Iillt-DG~~~~~~~~i~~~v~~ 121 (155)
T PF13768_consen 87 ALALLQRPGCVRAIILLT-DGQPVSGEEEILDLVRR 121 (155)
T ss_pred HHHhcccCCCccEEEEEE-eccCCCCHHHHHHHHHh
Confidence 44433 345789999998 444 2333445455543
No 205
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=28.83 E-value=4.1e+02 Score=28.13 Aligned_cols=44 Identities=25% Similarity=0.214 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEE
Q 008310 173 FKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVI 217 (570)
Q Consensus 173 ~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VI 217 (570)
...+++..++.+++.|+..||-.+|...+ ||-+.+..|+++.|+
T Consensus 55 ~~~~l~~a~~~G~~~vvs~G~s~GN~g~a-lA~aa~~~G~~~~iv 98 (337)
T PRK12390 55 LEYLVPDALAQGADTLVSIGGVQSNHTRQ-VAAVAAHLGMKCVLV 98 (337)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccHHHHH-HHHHHHHcCCeEEEE
Confidence 45566667789999999999888887654 667788889886554
No 206
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=28.80 E-value=1.4e+02 Score=30.82 Aligned_cols=53 Identities=17% Similarity=0.121 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCCEEEEe-----cCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCC
Q 008310 175 QAEETVKKLDLDGLVVI-----GGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 228 (570)
Q Consensus 175 ~~~~~l~k~~Id~LviI-----GGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 228 (570)
.+++.+-.++.|-.|.| +|-|+..+|..|+.++++.++++-+.|- .|+|+|-.
T Consensus 71 ~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~-~s~D~~tg 128 (256)
T PRK03359 71 KGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGD-GSSDLYAQ 128 (256)
T ss_pred HHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcC-ccccCCCC
Confidence 55666778899977777 4669999999999999988888766664 77787765
No 207
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=28.78 E-value=6.5e+02 Score=26.16 Aligned_cols=125 Identities=16% Similarity=0.176 Sum_probs=73.0
Q ss_pred ccEEEEEe--cCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 90 SLKIGVVL--SGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 90 ~~~IGIv~--sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
..+||.+- .|.+.|.++..+.|....++..+|+.++.-.. +|+ +
T Consensus 126 t~~vg~ig~i~G~~~p~~~~~~~gF~~Ga~~~np~i~v~~~~------------------------~gs----------~ 171 (306)
T PF02608_consen 126 TGKVGFIGDIGGMDIPPVNRFINGFIAGAKYVNPDIKVNVSY------------------------TGS----------F 171 (306)
T ss_dssp STEEEEEEEEES--SCTTHHHHHHHHHHHHHTTTT-EEEEEE-------------------------SS----------S
T ss_pred cCcccccccccCCCcHhHHHHHHHHHHHHHHhCcCceEEEEE------------------------cCC----------c
Confidence 35788776 58899999999999999888888877764221 122 2
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHH
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSE 247 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se 247 (570)
.+++.-+++.+.+-..+.|.++-+.|..+........| .|..--+||+..--+..-++.-+ .|+++-+..
T Consensus 172 ~D~~~~~~~a~~li~~GaDvI~~~ag~~~~gv~~aa~e----~g~~~~~IG~d~dq~~~~p~~vl------tS~~k~~~~ 241 (306)
T PF02608_consen 172 NDPAKAKEAAEALIDQGADVIFPVAGGSGQGVIQAAKE----AGVYGYVIGVDSDQSYLAPNNVL------TSVVKNWDQ 241 (306)
T ss_dssp S-HHHHHHHHHHHHHTT-SEEEEE-CCCHHHHHHHHHH----HTHETEEEEEES--CCSSTTCEE------EEEEEEHHH
T ss_pred CchHHHHHHHHHHhhcCCeEEEECCCCCchHHHHHHHH----cCCceEEEEecccccccCCCeEE------EEEEEcCHH
Confidence 35666778888888899999999888655444333333 34211399987644333333222 444545555
Q ss_pred HHHHHHHHhhh
Q 008310 248 VIGNVMTDARS 258 (570)
Q Consensus 248 ~I~ni~~Da~S 258 (570)
.+-++..++..
T Consensus 242 ~~~~~i~~~~~ 252 (306)
T PF02608_consen 242 AVYDIIKDVLD 252 (306)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 55555454444
No 208
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=28.54 E-value=5.5e+02 Score=24.82 Aligned_cols=83 Identities=19% Similarity=0.296 Sum_probs=50.7
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChHH
Q 008310 93 IGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQ 172 (570)
Q Consensus 93 IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~ 172 (570)
|||++..-..|-....+.|+-++++.. |.++. +..+. .+++.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~~~ 43 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYEN--GYQML---------------------------------LMNTN---FSIEK 43 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC---CCHHH
Confidence 788888888888888888888776542 22221 11111 12344
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 173 FKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 173 ~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
....++.+...++|++|+.+.+.+.. +.+.+.+.+ ++||.+
T Consensus 44 ~~~~i~~l~~~~~dgii~~~~~~~~~----~~~~~~~~~--ipvv~~ 84 (259)
T cd01542 44 EIEALELLARQKVDGIILLATTITDE----HREAIKKLN--VPVVVV 84 (259)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHH----HHHHHhcCC--CCEEEE
Confidence 45666778889999999998764322 223334445 455554
No 209
>KOG2998 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.93 E-value=1.9e+02 Score=30.69 Aligned_cols=73 Identities=29% Similarity=0.330 Sum_probs=50.9
Q ss_pred chHHHHHHhhhcCC-CC-CC-cccchhhhHHHHHHHHHHHHHHhhccCccccccccccccCcccccCCCC--CHHHHHHH
Q 008310 376 FPEEIQKQLLLERD-PH-GN-VQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFP--TNFDANYC 450 (570)
Q Consensus 376 lp~~i~~ql~~~rD-~~-Gn-~~ls~i~te~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~P--S~fD~~~a 450 (570)
.|+. +.+++.... +. +. +-|.+|+..-++.+|++.+-.+ .++|.++...| +.||..||
T Consensus 186 ~~~~-aq~lL~~s~~~r~eYpfAVvgINIT~m~~qmL~~eal~----------------~~~~~~~~~~~~~~~F~~lYc 248 (302)
T KOG2998|consen 186 YPTS-AQRLLLKSRHPRWEYPFAVVGINITFMAIQMLDLEALK----------------KHFNNIVKVFETEPAFDLLYC 248 (302)
T ss_pred hhHH-HHHHHHhcCCCccCCceEEEeecHHHHHHHHHHhhhcc----------------ccccccccccccHHHHHHHHH
Confidence 3545 344554332 22 32 3578999999999999887432 34566666656 67999999
Q ss_pred HHHHHHHHHHHHcCC
Q 008310 451 YALGFASGALLHAGK 465 (570)
Q Consensus 451 ~~lG~~A~~li~~g~ 465 (570)
+++=.-+..++....
T Consensus 249 ~af~~~d~~Wl~~~~ 263 (302)
T KOG2998|consen 249 YAFLEFDKQWLEQRA 263 (302)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999988763
No 210
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=27.87 E-value=1.4e+02 Score=31.46 Aligned_cols=81 Identities=14% Similarity=0.191 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecc--cCCCCCCChHHHHHHHHHHHHcC
Q 008310 107 NVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLC--SGRDKIETPEQFKQAEETVKKLD 184 (570)
Q Consensus 107 nvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lG--s~R~k~~~~e~~~~~~~~l~k~~ 184 (570)
..++..++.++.+++. .+-+-.|..|..... +.+....+++.-|.+.+- |||.. +.++++..+..+..++
T Consensus 39 ~~l~~~~~~l~~~~p~--fvsVT~~~~~~~~~r----~~~~a~~i~~~~g~~~i~Hltcr~~--n~~~l~~~L~~~~~~G 110 (296)
T PRK09432 39 QTLWNSIDRLSSLKPK--FVSVTYGANSGERDR----THSIIKGIKKRTGLEAAPHLTCIDA--TPDELRTIAKDYWNNG 110 (296)
T ss_pred HHHHHHHHHHHhcCCC--EEEEecCCCCcHHHH----HHHHHHHHHHHhCCCeeeecccCCC--CHHHHHHHHHHHHHCC
Confidence 4455566788777664 556777776643333 233334454444554433 66764 7788999999999999
Q ss_pred CCEEEEecCch
Q 008310 185 LDGLVVIGGDD 195 (570)
Q Consensus 185 Id~LviIGGdd 195 (570)
|+.+++++||-
T Consensus 111 I~niLaLrGD~ 121 (296)
T PRK09432 111 IRHIVALRGDL 121 (296)
T ss_pred CCEEEEeCCCC
Confidence 99999999994
No 211
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=27.35 E-value=6.9e+02 Score=25.62 Aligned_cols=150 Identities=15% Similarity=0.171 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhH---------------HHHHHHHHHHhcCCCCceEEEeecc--ccCCCCCC----C
Q 008310 173 FKQAEETVKKLDLDGLVVIGGDDSN---------------TNACLLAENFRSKDMKTRVIGCPKT--IDGDLKCK----D 231 (570)
Q Consensus 173 ~~~~~~~l~k~~Id~LviIGGddS~---------------t~A~~Lae~~~~~g~~i~VIgVPKT--IDNDL~~~----~ 231 (570)
.+.+.+.+++.+.|.+|-..|--+. .....|++.+.+.|. ++|.+=-. -|++-..+ +
T Consensus 40 ~~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~--~li~~STd~VFdG~~~~~y~E~d 117 (286)
T PF04321_consen 40 PEAVAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGA--RLIHISTDYVFDGDKGGPYTEDD 117 (286)
T ss_dssp HHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEEEEGGGS-SSTSSSB-TTS
T ss_pred HHHHHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCC--cEEEeeccEEEcCCcccccccCC
Confidence 4556666677789999999875322 233567888777664 67766443 24542221 2
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhhcCCeeEEEEe---cCC-CCcHHHHHh-hhhcCCcEEEECCchhhhhcchHHHH
Q 008310 232 VPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRL---MGR-AASHITLEC-ALQTHPNIAIIGEEIAAKKLTLKNVT 306 (570)
Q Consensus 232 ie~s~GFdTA~k~~se~I~ni~~Da~S~~k~~~fIev---MGR-~ag~lAle~-aLat~pnivlIpEe~~~~~~tL~~iv 306 (570)
......+.--.|.-+|. -.......+.++|+ .|. ..+++.... .++.+..+-+.. ..........|+.
T Consensus 118 ~~~P~~~YG~~K~~~E~------~v~~~~~~~~IlR~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~-d~~~~p~~~~dlA 190 (286)
T PF04321_consen 118 PPNPLNVYGRSKLEGEQ------AVRAACPNALILRTSWVYGPSGRNFLRWLLRRLRQGEPIKLFD-DQYRSPTYVDDLA 190 (286)
T ss_dssp ----SSHHHHHHHHHHH------HHHHH-SSEEEEEE-SEESSSSSSHHHHHHHHHHCTSEEEEES-SCEE--EEHHHHH
T ss_pred CCCCCCHHHHHHHHHHH------HHHHhcCCEEEEecceecccCCCchhhhHHHHHhcCCeeEeeC-CceeCCEEHHHHH
Confidence 22234444445555543 22222223578887 666 446665433 334444455444 3333446778888
Q ss_pred HHHHHHHHHHHHcCCCeEEE-EEeCC
Q 008310 307 DYITDIICKRSEAGYNFGVV-LISEG 331 (570)
Q Consensus 307 ~~i~d~I~~R~~~gk~~gvI-li~EG 331 (570)
+.+..++.++......+||. +.+.+
T Consensus 191 ~~i~~l~~~~~~~~~~~Giyh~~~~~ 216 (286)
T PF04321_consen 191 RVILELIEKNLSGASPWGIYHLSGPE 216 (286)
T ss_dssp HHHHHHHHHHHH-GGG-EEEE---BS
T ss_pred HHHHHHHHhcccccccceeEEEecCc
Confidence 88888888877655667887 44444
No 212
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.29 E-value=3.8e+02 Score=25.92 Aligned_cols=97 Identities=22% Similarity=0.244 Sum_probs=54.1
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChHH
Q 008310 93 IGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQ 172 (570)
Q Consensus 93 IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~ 172 (570)
|||+...-..|-...++.|+.+.++.. |.++.-+ .+. .+. +
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~~--g~~~~~~--------------------------------~~~----~~~-~ 42 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQAR--GYQPLLI--------------------------------NTD----DDE-D 42 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHC--CCeEEEE--------------------------------cCC----CCH-H
Confidence 677777666777777888887776542 3332200 000 011 2
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChh
Q 008310 173 FKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFD 239 (570)
Q Consensus 173 ~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFd 239 (570)
..+.++.+...++||+++.+.+.+- ..+ +.+.+.| ++||.+ |.|.....+ .++|+|
T Consensus 43 ~~~~i~~~~~~~vdgiii~~~~~~~---~~~-~~~~~~~--ipvV~~----~~~~~~~~~-~~v~~d 98 (266)
T cd06278 43 LDAALRQLLQYRVDGVIVTSGTLSS---ELA-EECRRNG--IPVVLI----NRYVDGPGV-DAVCSD 98 (266)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCH---HHH-HHHhhcC--CCEEEE----CCccCCCCC-CEEEEC
Confidence 3455677778999999998876432 122 3344445 567766 444332222 356665
No 213
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=27.22 E-value=2.5e+02 Score=30.99 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=57.0
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
.-|+|||||||- .+.|.+-++.-+- ...|..+++-|.= .-||=
T Consensus 133 ~~p~~I~viTs~-~gAa~~D~~~~~~----~r~p~~~~~~~~~---------------------~vQG~----------- 175 (438)
T PRK00286 133 FFPKRIGVITSP-TGAAIRDILTVLR----RRFPLVEVIIYPT---------------------LVQGE----------- 175 (438)
T ss_pred CCCCEEEEEeCC-ccHHHHHHHHHHH----hcCCCCeEEEecC---------------------cCcCc-----------
Confidence 448999999975 4455666666554 4456555443321 11221
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhc---CCCCceEEE
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRS---KDMKTRVIG 218 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~---~g~~i~VIg 218 (570)
..+..+-++++.+...++|.+||+=|-||...-..+.++-.. -.++++||.
T Consensus 176 ~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis 229 (438)
T PRK00286 176 GAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVIS 229 (438)
T ss_pred cHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEE
Confidence 134566677777776668999999999998876444443321 245677763
No 214
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.01 E-value=6.1e+02 Score=24.89 Aligned_cols=87 Identities=20% Similarity=0.122 Sum_probs=52.6
Q ss_pred EEEEEecCC-CCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCCh
Q 008310 92 KIGVVLSGG-QAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETP 170 (570)
Q Consensus 92 ~IGIv~sGG-~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~ 170 (570)
+||+++..- ..|-...++.|+-++++.. +..+. +..+ .. .++
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~--g~~v~--------------------------------~~~~-~~--~~~ 43 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDL--GVDVE--------------------------------YRGP-ET--FDV 43 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHh--CCEEE--------------------------------EECC-CC--CCH
Confidence 578888766 6788888888888887642 22221 1111 11 134
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
++....++.+...++|++|+.+.+..... ..+ +.++++| ++||.+
T Consensus 44 ~~~~~~i~~l~~~~vdgiii~~~~~~~~~-~~l-~~~~~~~--ipvV~~ 88 (271)
T cd06312 44 ADMARLIEAAIAAKPDGIVVTIPDPDALD-PAI-KRAVAAG--IPVISF 88 (271)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCChHHhH-HHH-HHHHHCC--CeEEEe
Confidence 55667788888899999999987643211 223 3334445 456654
No 215
>PLN02335 anthranilate synthase
Probab=26.95 E-value=76 Score=31.84 Aligned_cols=50 Identities=12% Similarity=0.266 Sum_probs=34.4
Q ss_pred HHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHH
Q 008310 181 KKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTF 245 (570)
Q Consensus 181 ~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~ 245 (570)
..++.|++|+-||-++.......-+..++.+-+++|.|| |+||.-.+..+
T Consensus 59 ~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGI---------------ClG~QlLa~al 108 (222)
T PLN02335 59 KRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGV---------------CMGLQCIGEAF 108 (222)
T ss_pred HhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEe---------------cHHHHHHHHHh
Confidence 446889999999999887653333444444545677774 99999655543
No 216
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=26.81 E-value=3e+02 Score=26.82 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
+.....++.+...++|++++++.+.+..... .+++.+ ++||.+
T Consensus 42 ~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~----~l~~~~--iPvv~~ 84 (268)
T cd06273 42 DREYAQARKLLERGVDGLALIGLDHSPALLD----LLARRG--VPYVAT 84 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCHHHHH----HHHhCC--CCEEEE
Confidence 4445666777888999999998764432222 333344 567765
No 217
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=26.69 E-value=2.6e+02 Score=27.54 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchh
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDS 196 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS 196 (570)
+...+.++.+.+ ++|+++++..+.+
T Consensus 46 ~~~~~~i~~~~~-~vdgiii~~~~~~ 70 (275)
T cd06307 46 AALAAALLRLGA-RSDGVALVAPDHP 70 (275)
T ss_pred HHHHHHHHHHHh-cCCEEEEeCCCcH
Confidence 334566677778 9999999987643
No 218
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=26.65 E-value=6.5e+02 Score=25.24 Aligned_cols=138 Identities=17% Similarity=0.230 Sum_probs=67.5
Q ss_pred cCCCeeEEecCCccccccCCCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCE-EEEEeCCcccccC-------CC
Q 008310 68 YGQPSARLVECDPMACTLMENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSK-LYGFRGGPAGIMK-------CK 139 (570)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~-v~Gf~~G~~GLl~-------~~ 139 (570)
...|.+-|..|. ...-....|+||=+--+++=+-.+...+...+.+ .+.. |-|+-.|.+.... +.
T Consensus 27 ~~~P~~Lf~~Gn-----~~ll~~~~iaIvGsR~~s~~~~~~a~~l~~~l~~--~g~~IVSG~A~GiD~~ah~~al~~~g~ 99 (220)
T TIGR00732 27 YDPPPVLFYKGD-----LPLLSQRKVAIVGTRRPTKYGERWTRKLAEELAK--NGVTIVSGLALGIDGIAHKAALKVNGR 99 (220)
T ss_pred CCCCceEEEECC-----cccccCCeEEEEcCCCCCHHHHHHHHHHHHHHHh--CCCEEEcCchhhHHHHHHHHHHHcCCC
Confidence 446777777774 1111225677776666666666666666555432 2222 2233333332110 11
Q ss_pred EE------------ECChhhhccccccCCceecccCCCCCC---Ch---HHHHHHHHHHHHcCCCEEEEecC---chhHH
Q 008310 140 FV------------ELSSEFIYPYRNQGGFDMLCSGRDKIE---TP---EQFKQAEETVKKLDLDGLVVIGG---DDSNT 198 (570)
Q Consensus 140 ~~------------eLt~~~v~~~~n~GG~~~lGs~R~k~~---~~---e~~~~~~~~l~k~~Id~LviIGG---ddS~t 198 (570)
.+ .-+.+..+.+...||. +| |- +.+. .. -.+.+++..+ =+++|+++. .||+.
T Consensus 100 tIaVl~~gld~~yp~~n~~l~~~i~~~ggl-li-Se-~p~~~~~~~~~f~~RNriia~l----s~~vivve~~~~sGtl~ 172 (220)
T TIGR00732 100 TIAVLGTGLDQIYPRQNSKLAAKIAENGGL-LL-SE-YPPDTKPIKYNFPKRNRIISGL----SRAVLVVEAPLKSGALI 172 (220)
T ss_pred EEEEECCCCccCCchhhHHHHHHHHHcCCE-EE-Ee-cCCCCCCCcccHHHHHHHHHHh----cCEEEEEECCCCCchHH
Confidence 11 1122334444556764 44 22 1111 11 2334443333 378888886 46666
Q ss_pred HHHHHHHHHhcCCCCceEEEeeccccC
Q 008310 199 NACLLAENFRSKDMKTRVIGCPKTIDG 225 (570)
Q Consensus 199 ~A~~Lae~~~~~g~~i~VIgVPKTIDN 225 (570)
+|..-.+ .| -.|..+|..+++
T Consensus 173 ta~~A~~----~g--r~v~~~pg~~~~ 193 (220)
T TIGR00732 173 TARYALE----QG--REVFAYPGDLNS 193 (220)
T ss_pred HHHHHHH----hC--CcEEEEcCCCCC
Confidence 6544333 35 369999988875
No 219
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=26.40 E-value=4.8e+02 Score=26.11 Aligned_cols=83 Identities=13% Similarity=0.134 Sum_probs=47.3
Q ss_pred EEEEEecCCC-CchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCCh
Q 008310 92 KIGVVLSGGQ-APGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETP 170 (570)
Q Consensus 92 ~IGIv~sGG~-aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~ 170 (570)
||++|....+ ..|+..+++.+.+.|.+......++....+........ ..++...+ .+. ..
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~-------------~~~~~~~~--~~~---~~ 62 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGG-------------EQEVVRVI--VLD---NP 62 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCC-------------cccceeee--ecC---Cc
Confidence 5788877766 77999999999999876544444443332221111100 00111111 111 22
Q ss_pred HHHHHHHHHHHHcCCCEEEEec
Q 008310 171 EQFKQAEETVKKLDLDGLVVIG 192 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIG 192 (570)
..+..+.+.+++.+.|.+++.-
T Consensus 63 ~~~~~~~~~~~~~~~dii~~~~ 84 (366)
T cd03822 63 LDYRRAARAIRLSGPDVVVIQH 84 (366)
T ss_pred hhHHHHHHHHhhcCCCEEEEee
Confidence 3456677788899999877754
No 220
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=26.35 E-value=1.6e+02 Score=31.36 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHHH----cCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEE
Q 008310 169 TPEQFKQAEETVKK----LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIG 218 (570)
Q Consensus 169 ~~e~~~~~~~~l~k----~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIg 218 (570)
+++++.++.+.+++ -+.||+||.-|.|||...+.+-.+..+ +.+.+||-
T Consensus 58 t~~~w~~la~~i~~~~~~~~~dG~VVtHGTDTmeeTA~~Ls~~l~-~l~kPVVl 110 (323)
T smart00870 58 TPADWLKLAKRINEALADDGYDGVVVTHGTDTLEETAYFLSLTLD-SLDKPVVL 110 (323)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCCccHHHHHHHHHHHhh-cCCCCEEE
Confidence 67777777777765 479999999999999886665555443 32334543
No 221
>PHA02518 ParA-like protein; Provisional
Probab=26.34 E-value=5.6e+02 Score=24.26 Aligned_cols=91 Identities=20% Similarity=0.202 Sum_probs=51.1
Q ss_pred cCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCC----CCC---hh--hHHHHHHHHHHHHHHHhhhcCCe
Q 008310 192 GGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPI----SFG---FD--TACKTFSEVIGNVMTDARSSGKY 262 (570)
Q Consensus 192 GGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~----s~G---Fd--TA~k~~se~I~ni~~Da~S~~k~ 262 (570)
||-|-=|.|..||-++.+.|.++-+| |-|.+++.... .-+ +. +..+.+.+.+.. ... .--
T Consensus 10 GGvGKTT~a~~la~~la~~g~~vlli------D~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~----~~~-~~d 78 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADGHKVLLV------DLDPQGSSTDWAEAREEGEPLIPVVRMGKSIRADLPK----VAS-GYD 78 (211)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEE------eCCCCCChHHHHHhcccCCCCCchhhccHHHHHHHHH----Hhc-cCC
Confidence 89999999999999998888764433 66765432100 000 00 000112222222 222 223
Q ss_pred eEEEEecCCCCcHHHHHhhhhcCCcEEEECCchh
Q 008310 263 YHFIRLMGRAASHITLECALQTHPNIAIIGEEIA 296 (570)
Q Consensus 263 ~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~ 296 (570)
|-||-+-|+ .+.+... +|+ .+|++|||=++.
T Consensus 79 ~viiD~p~~-~~~~~~~-~l~-~aD~viip~~ps 109 (211)
T PHA02518 79 YVVVDGAPQ-DSELARA-ALR-IADMVLIPVQPS 109 (211)
T ss_pred EEEEeCCCC-ccHHHHH-HHH-HCCEEEEEeCCC
Confidence 568888876 5566544 443 789999986664
No 222
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=26.23 E-value=1.5e+02 Score=31.98 Aligned_cols=48 Identities=21% Similarity=0.341 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEE
Q 008310 169 TPEQFKQAEETVKKL----DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIG 218 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~----~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIg 218 (570)
+++++..+.+.+++. +.|++||.-|.|||...+.+-....+.+ .+||-
T Consensus 86 t~~dw~~la~~I~~~~~~~~~~GiVVtHGTDTme~tA~~Lsl~l~~~--kPVVl 137 (349)
T TIGR00520 86 NEEVLLKLAKGINELLASDDYDGIVITHGTDTLEETAYFLDLTVKSD--KPVVI 137 (349)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEeCCcccHHHHHHHHHHHcCCC--CCEEE
Confidence 567777776666544 6999999999999988777555554433 34543
No 223
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=26.07 E-value=4e+02 Score=22.40 Aligned_cols=64 Identities=23% Similarity=0.250 Sum_probs=42.6
Q ss_pred cCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhcCCeeEEEEecCC
Q 008310 192 GGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGR 271 (570)
Q Consensus 192 GGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ni~~Da~S~~k~~~fIevMGR 271 (570)
||.|.-+.|..|+.++.++|.++-++ |.|.. .. +-+|-+-+.
T Consensus 9 gG~Gkst~~~~la~~~~~~~~~vl~~------d~d~~-------------------------------~d-~viiD~p~~ 50 (104)
T cd02042 9 GGVGKTTTAVNLAAALARRGKRVLLI------DLDPQ-------------------------------YD-YIIIDTPPS 50 (104)
T ss_pred CCcCHHHHHHHHHHHHHhCCCcEEEE------eCCCC-------------------------------CC-EEEEeCcCC
Confidence 78999999999999999877664444 55543 22 456776554
Q ss_pred CCcHHHHHhhhhcCCcEEEECCchh
Q 008310 272 AASHITLECALQTHPNIAIIGEEIA 296 (570)
Q Consensus 272 ~ag~lAle~aLat~pnivlIpEe~~ 296 (570)
. +..+. .++ ..+|.+++|=++.
T Consensus 51 ~-~~~~~-~~l-~~ad~viv~~~~~ 72 (104)
T cd02042 51 L-GLLTR-NAL-AAADLVLIPVQPS 72 (104)
T ss_pred C-CHHHH-HHH-HHCCEEEEeccCC
Confidence 4 55554 233 4578888886654
No 224
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=25.51 E-value=5.5e+02 Score=23.89 Aligned_cols=49 Identities=16% Similarity=0.119 Sum_probs=35.4
Q ss_pred HHHHHcCCCEEEEecCchhHH-----HHHHHHHHHhcCCCCceEEEeeccccCC
Q 008310 178 ETVKKLDLDGLVVIGGDDSNT-----NACLLAENFRSKDMKTRVIGCPKTIDGD 226 (570)
Q Consensus 178 ~~l~k~~Id~LviIGGddS~t-----~A~~Lae~~~~~g~~i~VIgVPKTIDND 226 (570)
+.+++.+++++=+-..+.... .+..+.+.+++.|+.+..++.+.-...+
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~ 55 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSP 55 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCT
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccc
Confidence 567788888888777776555 4778888888899887777766544443
No 225
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=25.18 E-value=4.5e+02 Score=26.47 Aligned_cols=87 Identities=14% Similarity=0.102 Sum_probs=49.5
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChHH
Q 008310 93 IGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQ 172 (570)
Q Consensus 93 IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~ 172 (570)
||+|+..-..|-...++.|+.+.++.... ..++ +.+.+.. +.+.
T Consensus 1 Igvi~~~~~~~f~~~~~~gi~~~a~~~g~-~~~i--------------------------------~~~~~~~---d~~~ 44 (302)
T TIGR02637 1 IGLVVKSLGNPFFEAANKGAEEAAKELGS-VYII--------------------------------YTGPTGT---TAEG 44 (302)
T ss_pred CEEEeccCCCHHHHHHHHHHHHHHHHhCC-eeEE--------------------------------EECCCCC---CHHH
Confidence 57777766778888888888887654310 0000 0011111 2344
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 173 FKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 173 ~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
....++.+...++|++++.+-+.+ .....+ +.+.+.| ++||.+
T Consensus 45 q~~~i~~l~~~~vdgiIi~~~~~~-~~~~~l-~~~~~~g--iPvV~~ 87 (302)
T TIGR02637 45 QIEVVNSLIAQKVDAIAISANDPD-ALVPAL-KKAMKRG--IKVVTW 87 (302)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChH-HHHHHH-HHHHHCC--CEEEEe
Confidence 456788888999999999876422 111223 3344445 567653
No 226
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=25.08 E-value=50 Score=34.64 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCC
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 226 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 226 (570)
.+++.++..| ....|.++||||-.|. |..+|+|-+++.+.++-.|-=|.=||-|
T Consensus 197 ~~RQ~a~~~L-a~~vD~miVVGg~~Ss-NT~rL~eia~~~~~~t~~Ie~~~el~~~ 250 (281)
T PRK12360 197 KKRQESAKEL-SKEVDVMIVIGGKHSS-NTQKLVKICEKNCPNTFHIETADELDLE 250 (281)
T ss_pred hhHHHHHHHH-HHhCCEEEEecCCCCc-cHHHHHHHHHHHCCCEEEECChHHCCHH
Confidence 3455555555 3579999999999985 4467888888777666677667666544
No 227
>PF04009 DUF356: Protein of unknown function (DUF356); InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=24.75 E-value=2.2e+02 Score=25.72 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=30.0
Q ss_pred EEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCC
Q 008310 188 LVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 228 (570)
Q Consensus 188 LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 228 (570)
|++|=||+....-..||+- .+.| ++.+.|-|+-|+-++.
T Consensus 1 ~~lIR~dn~~K~~~ALaDl-eRh~-~l~i~gkPrii~p~~A 39 (107)
T PF04009_consen 1 LILIRADNYDKILNALADL-ERHG-GLKIRGKPRIIPPEYA 39 (107)
T ss_pred CeEEecCCHHHHHHHHHHH-HHhc-CCeEecCCcccChHHH
Confidence 5788888888877788874 3334 5789999999987765
No 228
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=24.66 E-value=7.4e+02 Score=25.07 Aligned_cols=70 Identities=20% Similarity=0.342 Sum_probs=46.8
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+...|||++..-..|-...++.|+-+.+.+. |.+++-+. +.+
T Consensus 55 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~------------------------~~~------------ 96 (327)
T PRK10423 55 QTRTIGMLITASTNPFYSELVRGVERSCFER--GYSLVLCN------------------------TEG------------ 96 (327)
T ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHHc--CCEEEEEe------------------------CCC------------
Confidence 4478999997767788888889988886542 33322100 000
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchh
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDS 196 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS 196 (570)
+++...+.++.+...++||+|+.+.+.+
T Consensus 97 ~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 124 (327)
T PRK10423 97 DEQRMNRNLETLMQKRVDGLLLLCTETH 124 (327)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 2334456777788899999999987643
No 229
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=24.63 E-value=1.5e+02 Score=31.56 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCchhHHHHHHHHHHHhcCC
Q 008310 169 TPEQFKQAEETVKKL--DLDGLVVIGGDDSNTNACLLAENFRSKD 211 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~--~Id~LviIGGddS~t~A~~Lae~~~~~g 211 (570)
+++++.++.+.+++. +.||+||.=|.|||.-.+.+-.+..+.+
T Consensus 61 t~~~w~~l~~~I~~~~~~~dGiVVtHGTDTmeeTA~~L~~~l~~~ 105 (323)
T cd00411 61 TDEDWLKIAKDINELYDSYDGFVITHGTDTMEETAYFLSLTLEND 105 (323)
T ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEcCcccHHHHHHHHHHHhcCC
Confidence 677777777766553 6999999999999988766655555444
No 230
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=24.53 E-value=1.4e+02 Score=31.41 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecccc
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTID 224 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTID 224 (570)
.+++.+++.|-+ ..|.++||||-.|. |..+|+|-+++.|.++-.|-=+.=||
T Consensus 196 ~~RQ~a~~~la~-~vD~miVVGg~nSs-NT~rL~ei~~~~~~~t~~Ie~~~el~ 247 (280)
T TIGR00216 196 QNRQDAVKELAP-EVDLMIVIGGKNSS-NTTRLYEIAEEHGPPSYLIETAEELP 247 (280)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCc-hHHHHHHHHHHhCCCEEEECChHHCC
Confidence 345555555533 59999999999985 44678888887776655555555444
No 231
>PLN02735 carbamoyl-phosphate synthase
Probab=24.52 E-value=3.5e+02 Score=33.89 Aligned_cols=106 Identities=25% Similarity=0.296 Sum_probs=58.9
Q ss_pred CCCCccEEEEEecCCCCch--------hhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCc
Q 008310 86 MENKSLKIGVVLSGGQAPG--------GHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGF 157 (570)
Q Consensus 86 ~~~~~~~IGIv~sGG~aPG--------~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~ 157 (570)
.....+||.|+-||...-| +..++.++ +. .|.+|+.+-.-+..+..+ .+..+.+
T Consensus 19 ~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaL----ke--~G~~Vi~vd~np~t~~~~------~~~aD~~------ 80 (1102)
T PLN02735 19 KRTDLKKIMILGAGPIVIGQACEFDYSGTQACKAL----KE--EGYEVVLINSNPATIMTD------PETADRT------ 80 (1102)
T ss_pred cccCCCEEEEECCCccccccceeecchHHHHHHHH----HH--cCCEEEEEeCCcccccCC------hhhCcEE------
Confidence 3455789999999965444 44555544 33 377888775433211111 1111111
Q ss_pred eecccCCCCCCChHHHHHHHHHHHHcCCCEEEE-ecCchhHHHHHHHHH--HHhcCCCCceEEEee
Q 008310 158 DMLCSGRDKIETPEQFKQAEETVKKLDLDGLVV-IGGDDSNTNACLLAE--NFRSKDMKTRVIGCP 220 (570)
Q Consensus 158 ~~lGs~R~k~~~~e~~~~~~~~l~k~~Id~Lvi-IGGddS~t~A~~Lae--~~~~~g~~i~VIgVP 220 (570)
.+ .+.++ +.+.+.|++.++|+++. +||+.....|..|++ .+.+.| ++++|.+
T Consensus 81 -yi-----~p~~~---e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~G--I~~~G~~ 135 (1102)
T PLN02735 81 -YI-----APMTP---ELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYG--VELIGAK 135 (1102)
T ss_pred -Ee-----CCCCH---HHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCC--CEEECCC
Confidence 01 11133 34667788999999995 588877777776763 233333 4566544
No 232
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=24.50 E-value=8.6e+02 Score=26.16 Aligned_cols=104 Identities=12% Similarity=0.096 Sum_probs=60.2
Q ss_pred EEEecCchhHHHHHHHHHHHhcCCCCceEEEeecc------ccCCCCCCCCCCCCChhhHHHHHHHHHHHHH---HHhhh
Q 008310 188 LVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT------IDGDLKCKDVPISFGFDTACKTFSEVIGNVM---TDARS 258 (570)
Q Consensus 188 LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT------IDNDL~~~~ie~s~GFdTA~k~~se~I~ni~---~Da~S 258 (570)
+++-||.+..-..+.|++++++++.++.++|+-.. ++-......+ ...||....+.+..+...+. .....
T Consensus 9 ~i~aGgtsGhi~paal~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l-~v~G~~~~l~~~~~~~~~~~~~~~~l~~ 87 (385)
T TIGR00215 9 ALVAGEASGDILGAGLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSMEEL-SVMGLREVLGRLGRLLKIRKEVVQLAKQ 87 (385)
T ss_pred EEEeCCccHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCccccChHHh-hhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666655555999999988888999987642 1111222223 36687666666665555443 22222
Q ss_pred cCCeeEEEEecCCCCcHHHH--HhhhhcCCcEEEECCc
Q 008310 259 SGKYYHFIRLMGRAASHITL--ECALQTHPNIAIIGEE 294 (570)
Q Consensus 259 ~~k~~~fIevMGR~ag~lAl--e~aLat~pnivlIpEe 294 (570)
. + --+|=.+|-.+..+.+ .+....-|-+.+||=+
T Consensus 88 ~-k-Pd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~ 123 (385)
T TIGR00215 88 A-K-PDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQ 123 (385)
T ss_pred c-C-CCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCc
Confidence 2 2 3577788853436333 4444455777766533
No 233
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=24.37 E-value=6.2e+02 Score=26.11 Aligned_cols=68 Identities=16% Similarity=0.058 Sum_probs=46.1
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+...|||++..-..|-...++.|+-+.++.. +..++- ..+. .
T Consensus 58 ~~~~Igvi~~~~~~~f~~~l~~gi~~~~~~~--gy~~~~---------------------------------~~~~---~ 99 (346)
T PRK10401 58 VSDTIGVVVMDVSDAFFGALVKAVDLVAQQH--QKYVLI---------------------------------GNSY---H 99 (346)
T ss_pred CCCEEEEEeCCCCCccHHHHHHHHHHHHHHC--CCEEEE---------------------------------EcCC---C
Confidence 4468999998877888888999998886543 333220 0000 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGD 194 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGd 194 (570)
+++.....++.+...++||+++.+..
T Consensus 100 ~~~~~~~~i~~l~~~~vdGiIi~~~~ 125 (346)
T PRK10401 100 EAEKERHAIEVLIRQRCNALIVHSKA 125 (346)
T ss_pred ChHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 23344566777888999999999854
No 234
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=24.34 E-value=3.5e+02 Score=25.32 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHc-CCCEEEEecCchhHHHHHHHHHHHhcCCC---CceEEEeecc
Q 008310 171 EQFKQAEETVKKL-DLDGLVVIGGDDSNTNACLLAENFRSKDM---KTRVIGCPKT 222 (570)
Q Consensus 171 e~~~~~~~~l~k~-~Id~LviIGGddS~t~A~~Lae~~~~~g~---~i~VIgVPKT 222 (570)
+.++.+.+.+++. +.+++++.+.. .+..+.+++.+.|. ++.|++.--+
T Consensus 168 ~~~~~~~~~l~~~~~~~~i~~~~~~----~a~~~~~~~~~~g~~~~~~~ii~~~~~ 219 (269)
T cd01391 168 KGFQALLQLLKAAPKPDAIFACNDE----MAAGALKAAREAGLTPGDISIIGFDGS 219 (269)
T ss_pred ccHHHHHHHHhcCCCCCEEEEcCch----HHHHHHHHHHHcCCCCCCCEEEecccc
Confidence 5678888888887 78988887652 33334444555554 5777765433
No 235
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=24.34 E-value=3.7e+02 Score=29.82 Aligned_cols=95 Identities=16% Similarity=0.108 Sum_probs=58.4
Q ss_pred CCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCC
Q 008310 87 ENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDK 166 (570)
Q Consensus 87 ~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k 166 (570)
+.-|++||||+|- .+.+.+-++.-+- ..+|..+++-|. -.-+|-.
T Consensus 126 P~~p~~i~vits~-~~aa~~D~~~~~~----~r~p~~~~~~~~---------------------~~vQG~~--------- 170 (432)
T TIGR00237 126 PHFPKRVGVITSQ-TGAALADILHILK----RRDPSLKVVIYP---------------------TLVQGEG--------- 170 (432)
T ss_pred CCCCCEEEEEeCC-ccHHHHHHHHHHH----hhCCCceEEEec---------------------ccccCcc---------
Confidence 3457899999975 4556666655543 445655554221 0112221
Q ss_pred CCChHHHHHHHHHHHHcC-CCEEEEecCchhHHHHHHHHHHHhc---CCCCceEEE
Q 008310 167 IETPEQFKQAEETVKKLD-LDGLVVIGGDDSNTNACLLAENFRS---KDMKTRVIG 218 (570)
Q Consensus 167 ~~~~e~~~~~~~~l~k~~-Id~LviIGGddS~t~A~~Lae~~~~---~g~~i~VIg 218 (570)
.+..+-++++.+...+ +|.+||+=|-||...-..+.++-.. ..++++||.
T Consensus 171 --a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis 224 (432)
T TIGR00237 171 --AVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIIS 224 (432)
T ss_pred --HHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEE
Confidence 3455666666666544 8999999999999887655554322 256777764
No 236
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=24.33 E-value=6.4e+02 Score=24.17 Aligned_cols=86 Identities=17% Similarity=0.187 Sum_probs=51.5
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
+||+|......|....++.|+-++++.. +.++. +-.+.. +++
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~~--g~~~~---------------------------------~~~~~~---~~~ 42 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKEL--GVELI---------------------------------VLDAQN---DVS 42 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHhc--CceEE---------------------------------EECCCC---CHH
Confidence 5899998778899999999998876541 11110 001111 344
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
...++++.+...++|++++.+.+..... . ..+++.+.+ +++|.+
T Consensus 43 ~~~~~~~~l~~~~vdgvi~~~~~~~~~~-~-~~~~l~~~~--ip~V~~ 86 (267)
T cd01536 43 KQIQQIEDLIAQGVDGIIISPVDSAALT-P-ALKKANAAG--IPVVTV 86 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCchhHH-H-HHHHHHHCC--CcEEEe
Confidence 4556677777779999999876543221 1 223334444 456655
No 237
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=24.24 E-value=5.5e+02 Score=24.15 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCC
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDL 227 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL 227 (570)
++++++++++.+.+- +-++++|--.|...|..++..+...|. .+..++-....++
T Consensus 16 ~~~~~~~~~~~l~~a--~~I~i~G~G~S~~~A~~~~~~l~~~g~--~~~~~~~~~~~~~ 70 (179)
T TIGR03127 16 DEEELDKLADKIIKA--KRIFVAGAGRSGLVGKAFAMRLMHLGF--NVYVVGETTTPSI 70 (179)
T ss_pred CHHHHHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHHhCCC--eEEEeCCcccCCC
Confidence 678899999998764 578888887888778778777766564 4554443333333
No 238
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=24.10 E-value=4.7e+02 Score=22.57 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=60.7
Q ss_pred EEEEEecCCCCc-hhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCCh
Q 008310 92 KIGVVLSGGQAP-GGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETP 170 (570)
Q Consensus 92 ~IGIv~sGG~aP-G~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~ 170 (570)
|+.+..++++.| =+-..++++.+. .|.++.-+ +... +.+.+.........+++|-|-....+.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~-----~G~~v~~~-d~~~----------~~~~l~~~~~~~~pd~V~iS~~~~~~~ 65 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRK-----AGHEVDIL-DANV----------PPEELVEALRAERPDVVGISVSMTPNL 65 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHH-----TTBEEEEE-ESSB-----------HHHHHHHHHHTTCSEEEEEESSSTHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHH-----CCCeEEEE-CCCC----------CHHHHHHHHhcCCCcEEEEEccCcCcH
Confidence 677778888874 445555555532 36676522 1110 113333332223446777554333345
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchh-HHHHHHHHHHHhcCCCCceEEE
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDS-NTNACLLAENFRSKDMKTRVIG 218 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS-~t~A~~Lae~~~~~g~~i~VIg 218 (570)
+...++++.+++.+=+..+++||-.. ...-..|.++ .+++.-|+|
T Consensus 66 ~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~~---~~~D~vv~G 111 (121)
T PF02310_consen 66 PEAKRLARAIKERNPNIPIVVGGPHATADPEEILREY---PGIDYVVRG 111 (121)
T ss_dssp HHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHHHHH---HTSEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCchhcChHHHhccC---cCcceecCC
Confidence 56777788888888999999999874 4333334332 355544444
No 239
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=24.04 E-value=89 Score=32.88 Aligned_cols=101 Identities=21% Similarity=0.144 Sum_probs=55.1
Q ss_pred EEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHH-HHH
Q 008310 124 KLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTN-ACL 202 (570)
Q Consensus 124 ~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~-A~~ 202 (570)
++.-+++-..| +++....-.+..+.+...|.. . +.|.- ....+..++++.+...+.|.+|+.||||+... ++-
T Consensus 4 ~~~~i~Np~sG--~~~~~~~~~~~~~~l~~~g~~-~--~~~~t-~~~g~a~~~a~~a~~~~~D~via~GGDGTv~eving 77 (301)
T COG1597 4 KALLIYNPTSG--KGKAKKLLREVEELLEEAGHE-L--SVRVT-EEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANG 77 (301)
T ss_pred eEEEEEccccc--ccchhhHHHHHHHHHHhcCCe-E--EEEEe-ecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 45556666666 222222222334444445443 2 12211 01124556666666679999999999999774 455
Q ss_pred HHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 203 LAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 203 Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
|++ .+... +--||.===||+. .++|...
T Consensus 78 l~~----~~~~~-LgilP~GT~NdfA-----r~Lgip~ 105 (301)
T COG1597 78 LAG----TDDPP-LGILPGGTANDFA-----RALGIPL 105 (301)
T ss_pred Hhc----CCCCc-eEEecCCchHHHH-----HHcCCCc
Confidence 543 33332 6667876677775 3555544
No 240
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=23.81 E-value=1.4e+02 Score=30.89 Aligned_cols=56 Identities=11% Similarity=0.280 Sum_probs=39.1
Q ss_pred CCeeEEEEecCCCCcHHHHHhhhh-cCC---cEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEE
Q 008310 260 GKYYHFIRLMGRAASHITLECALQ-THP---NIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVL 327 (570)
Q Consensus 260 ~k~~~fIevMGR~ag~lAle~aLa-t~p---nivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIl 327 (570)
...+.++|+ .-||+...+++- +.. .++|+||.|... .+.|.+.|.+|. |++-+||+
T Consensus 89 ~~~~~i~~~---~~G~v~anAGID~SNv~~g~~~LLP~DPd~S-------A~~ir~~l~~~~--g~~v~VII 148 (245)
T PRK13293 89 EAPFILTET---KHGHVCANAGIDESNVPDGDLLLLPENPDES-------AERIREGLEELT--GKKVGVII 148 (245)
T ss_pred eCCeEEEEe---ccceEEeccccccccCCCCeEEecCCCHHHH-------HHHHHHHHHHHH--CCCEEEEE
Confidence 344567777 789998877775 222 488999998532 566777777764 77888765
No 241
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=23.78 E-value=2.9e+02 Score=28.90 Aligned_cols=122 Identities=10% Similarity=0.030 Sum_probs=58.2
Q ss_pred ChhHHHhhCCcccCCCeeEEecCCccccccCCCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccc
Q 008310 56 DPEEIKKLFPKFYGQPSARLVECDPMACTLMENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGI 135 (570)
Q Consensus 56 ~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GL 135 (570)
+.+++++.|..+...--+.+.- .....++||+|+.||+ -.- ..+++++.+...-+.+|.++.-
T Consensus 62 ~~~~L~~~L~~l~~~l~l~i~l-------~~~~~~~ri~vl~Sg~-gsn----l~al~~~~~~~~~~~~i~~vis----- 124 (286)
T PRK06027 62 NLETLRADFAALAEEFEMDWRL-------LDSAERKRVVILVSKE-DHC----LGDLLWRWRSGELPVEIAAVIS----- 124 (286)
T ss_pred CHHHHHHHHHHHHHHhCCEEEE-------cccccCcEEEEEEcCC-CCC----HHHHHHHHHcCCCCcEEEEEEE-----
Confidence 3667777666665542222211 1234668999999999 222 3455555433222345554432
Q ss_pred cCCCEEECChhhhccccccCCceecccCCCCCCChHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHHH
Q 008310 136 MKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQF-KQAEETVKKLDLDGLVVIGGDDSNTNACLLA 204 (570)
Q Consensus 136 l~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~~-~~~~~~l~k~~Id~LviIGGddS~t~A~~La 204 (570)
++ ..+..+...=|-...--.+.+ .+.+.+ .++.+.+++++.|.+|+.| ..-.-....|.
T Consensus 125 --n~------~~~~~lA~~~gIp~~~~~~~~-~~~~~~~~~~~~~l~~~~~Dlivlag-y~~il~~~~l~ 184 (286)
T PRK06027 125 --NH------DDLRSLVERFGIPFHHVPVTK-ETKAEAEARLLELIDEYQPDLVVLAR-YMQILSPDFVA 184 (286)
T ss_pred --cC------hhHHHHHHHhCCCEEEeccCc-cccchhHHHHHHHHHHhCCCEEEEec-chhhcCHHHHh
Confidence 11 122222222232222111111 122233 3568889999999666554 44433344443
No 242
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=23.62 E-value=1.3e+02 Score=32.96 Aligned_cols=109 Identities=20% Similarity=0.210 Sum_probs=69.0
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEe------CCcccccCCCEEECChhhhccccccCCceecccCC
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFR------GGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGR 164 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~------~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R 164 (570)
++|+|+. |.++| +..-+++++.+++..++.+.+|+- .|.+-|+ +++.+.-+|=+..|+.=
T Consensus 2 ~ki~i~A--GE~SG-DllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~----------~~~elsvmGf~EVL~~l- 67 (381)
T COG0763 2 LKIALSA--GEASG-DLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLF----------DMEELSVMGFVEVLGRL- 67 (381)
T ss_pred ceEEEEe--cccch-hhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCcccc----------CHHHHHHhhHHHHHHHH-
Confidence 4566554 44444 556678999999999999999886 2332222 22233333322223211
Q ss_pred CCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEE
Q 008310 165 DKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIG 218 (570)
Q Consensus 165 ~k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIg 218 (570)
+.--.-+.+.++++.+.+.|.||.|- |..--..+++.+++.+.++++|+
T Consensus 68 --p~llk~~~~~~~~i~~~kpD~~i~ID---sPdFnl~vak~lrk~~p~i~iih 116 (381)
T COG0763 68 --PRLLKIRRELVRYILANKPDVLILID---SPDFNLRVAKKLRKAGPKIKIIH 116 (381)
T ss_pred --HHHHHHHHHHHHHHHhcCCCEEEEeC---CCCCchHHHHHHHHhCCCCCeEE
Confidence 11123467778888899999999984 44455677888888898888886
No 243
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=23.62 E-value=2.4e+02 Score=25.20 Aligned_cols=41 Identities=24% Similarity=0.161 Sum_probs=23.8
Q ss_pred eecccCCCCCCChHHHHHHHHHHHHcCC-CEEEEecCchhHH
Q 008310 158 DMLCSGRDKIETPEQFKQAEETVKKLDL-DGLVVIGGDDSNT 198 (570)
Q Consensus 158 ~~lGs~R~k~~~~e~~~~~~~~l~k~~I-d~LviIGGddS~t 198 (570)
++++-|-..-...+..++.++.+++.+. +-.+++||.....
T Consensus 52 d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~ 93 (122)
T cd02071 52 DVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPE 93 (122)
T ss_pred CEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHH
Confidence 4555444333345566666777777655 5566777765533
No 244
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=23.33 E-value=1.2e+02 Score=31.02 Aligned_cols=88 Identities=17% Similarity=0.269 Sum_probs=62.2
Q ss_pred ccccCCCEEECChhhhccccccCCceecccCCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHH----HHHHHHHh
Q 008310 133 AGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNA----CLLAENFR 208 (570)
Q Consensus 133 ~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A----~~Lae~~~ 208 (570)
-|-.+++.-++-.+.|.......||+++==+|+-+ .+..++..++++=| +|++..+||+. ..+-|.++
T Consensus 109 igtveGDvHdIGk~iV~~ml~~aGfevidLG~dvP-----~e~fve~a~e~k~d---~v~~SalMTttm~~~~~viE~L~ 180 (227)
T COG5012 109 IGTVEGDVHDIGKNIVATMLEAAGFEVIDLGRDVP-----VEEFVEKAKELKPD---LVSMSALMTTTMIGMKDVIELLK 180 (227)
T ss_pred EEeecccHHHHHHHHHHHHHHhCCcEEEecCCCCC-----HHHHHHHHHHcCCc---EEechHHHHHHHHHHHHHHHHHH
Confidence 34556788888888899999999999988888876 34556667777733 56777777765 45667777
Q ss_pred cCCCCceEEEe--eccccCCCC
Q 008310 209 SKDMKTRVIGC--PKTIDGDLK 228 (570)
Q Consensus 209 ~~g~~i~VIgV--PKTIDNDL~ 228 (570)
+.|++-+|+.. +.-+++|..
T Consensus 181 eeGiRd~v~v~vGGApvtq~~a 202 (227)
T COG5012 181 EEGIRDKVIVMVGGAPVTQDWA 202 (227)
T ss_pred HcCCccCeEEeecCccccHHHH
Confidence 88888777655 333445543
No 245
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=23.29 E-value=1.3e+02 Score=31.19 Aligned_cols=91 Identities=16% Similarity=0.280 Sum_probs=56.1
Q ss_pred EEEEEeCCcccccCCCEEECChhhhccccccCCceecc--cCCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhH----
Q 008310 124 KLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLC--SGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSN---- 197 (570)
Q Consensus 124 ~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lG--s~R~k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~---- 197 (570)
..+-+-+|..|-... -|-.....+++.-|.+.+- |+|+. +..+++..+..+..++|+.+++++||.+.
T Consensus 30 d~isvT~~~~~~~~~----~t~~~a~~l~~~~g~~~i~Hlt~r~~--n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~ 103 (272)
T TIGR00676 30 DFVSVTYGAGGSTRD----RTVRIVRRIKKETGIPTVPHLTCIGA--TREEIREILREYRELGIRHILALRGDPPKGEGT 103 (272)
T ss_pred CEEEeccCCCCCcHH----HHHHHHHHHHHhcCCCeeEEeeecCC--CHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCC
Confidence 445566666653222 2233344455444544332 56653 67889999999999999999999999872
Q ss_pred ------HHHHHHHHHHhcC--CCCceEEEee
Q 008310 198 ------TNACLLAENFRSK--DMKTRVIGCP 220 (570)
Q Consensus 198 ------t~A~~Lae~~~~~--g~~i~VIgVP 220 (570)
..|..|-+..++. ...+-+.+.|
T Consensus 104 ~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~P 134 (272)
T TIGR00676 104 PTPGGFNYASELVEFIRNEFGDFDIGVAAYP 134 (272)
T ss_pred CCCCCCCCHHHHHHHHHHhcCCeeEEEEeCC
Confidence 2466666666553 2334445555
No 246
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=23.12 E-value=2.6e+02 Score=28.90 Aligned_cols=56 Identities=13% Similarity=0.290 Sum_probs=39.2
Q ss_pred CeeEEEEecCCCCcHHHHHhhhh-cC---CcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEE
Q 008310 261 KYYHFIRLMGRAASHITLECALQ-TH---PNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLI 328 (570)
Q Consensus 261 k~~~fIevMGR~ag~lAle~aLa-t~---pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli 328 (570)
+.+.++|+ ..||+...+++- +. -.++|+|+.+.. -.+.|.+.|.+|. |++-+||+.
T Consensus 89 ~~~~i~~~---~~G~v~anAGID~SN~~~g~v~LLP~DPd~-------sA~~ir~~l~~~~--g~~v~VIIt 148 (243)
T TIGR01916 89 TPFLITET---RHGHVCANAGIDESNVGNGELLLLPEDPDA-------SAEKIRRGLRELT--GVDVGVIIT 148 (243)
T ss_pred CCeEEEEe---cCceEEeccccccccCCCCeEEecCCChHH-------HHHHHHHHHHHHH--CCCEEEEEE
Confidence 44567888 788988888775 22 258899999853 2566666777664 788887764
No 247
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=23.11 E-value=1.2e+02 Score=33.20 Aligned_cols=70 Identities=23% Similarity=0.195 Sum_probs=54.2
Q ss_pred CceecccCCCC-C-CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCC
Q 008310 156 GFDMLCSGRDK-I-ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDV 232 (570)
Q Consensus 156 G~~~lGs~R~k-~-~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~i 232 (570)
|.|-|+--|.- + .+...-.+|++.++++++--|++=||-=+..+.++..-| .|.| .+=..++|+|+.++.
T Consensus 261 GaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtY------eT~v-~~~~~~~~elP~n~y 332 (425)
T KOG1342|consen 261 GADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTY------ETGV-LLDQELPNELPYNDY 332 (425)
T ss_pred CCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHHHHHH------Hhhh-hcCccccccCCCccc
Confidence 44666666632 2 366788999999999999999998998899999988777 3334 377889999997664
No 248
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=23.05 E-value=89 Score=29.90 Aligned_cols=47 Identities=19% Similarity=0.382 Sum_probs=31.0
Q ss_pred HcCCCEEEEecCchhHHHHH---HHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHH
Q 008310 182 KLDLDGLVVIGGDDSNTNAC---LLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFS 246 (570)
Q Consensus 182 k~~Id~LviIGGddS~t~A~---~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~s 246 (570)
..++|++|+.||.++-.... .+.+.+. . +++|.|| |+|+.-.+..+.
T Consensus 40 ~~~~dgvil~gG~~~~~~~~~~~~i~~~~~-~--~~PvlGI---------------C~G~Qlla~~~G 89 (184)
T cd01743 40 LLNPDAIVISPGPGHPEDAGISLEIIRALA-G--KVPILGV---------------CLGHQAIAEAFG 89 (184)
T ss_pred hcCCCEEEECCCCCCcccchhHHHHHHHHh-c--CCCEEEE---------------CHhHHHHHHHhC
Confidence 36799999999999854332 2333332 2 3567763 999998877754
No 249
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=22.90 E-value=1.1e+03 Score=26.38 Aligned_cols=146 Identities=18% Similarity=0.319 Sum_probs=93.3
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
.+||--.| |-=-+||.+.++..+. .+.-| .++-|...|+.+ ||. |+ .|+.
T Consensus 13 ~~Gi~SVC---sahp~VieAAl~~a~~--~~~pv--------------LiEAT~NQVdq~---GGY----TG----mtP~ 62 (421)
T PRK15052 13 HIGICSVC---SAHPLVIEAALAFDLN--STRKV--------------LIEATSNQVNQF---GGY----TG----MTPA 62 (421)
T ss_pred CCceeeEC---CCCHHHHHHHHHHHhh--cCCcE--------------EEEecccccccc---CCc----CC----CCHH
Confidence 44665533 3334889988776443 23333 478888888887 884 22 2667
Q ss_pred HHHH-HHHHHHHcCCCE-EEEecCch-------------hHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCC
Q 008310 172 QFKQ-AEETVKKLDLDG-LVVIGGDD-------------SNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISF 236 (570)
Q Consensus 172 ~~~~-~~~~l~k~~Id~-LviIGGdd-------------S~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~ 236 (570)
+|.. +.+..++.+++. .+|+|||. .|..|..|-+.+.+.|+. -|++=.|++ .. +...-+
T Consensus 63 dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca--~d~~~L 136 (421)
T PRK15052 63 DFREFVYGIADKVGFPRERIILGGDHLGPNCWQQEPADAAMEKSVELVKAYVRAGFS--KIHLDASMS--CA--DDPIPL 136 (421)
T ss_pred HHHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--cc--CCCccC
Confidence 7754 456678899998 99999974 456666666666677875 788877777 11 112366
Q ss_pred ChhhHHHHHHHHHHHHHHHhhh--cCCeeEEE--E--ecCCCC
Q 008310 237 GFDTACKTFSEVIGNVMTDARS--SGKYYHFI--R--LMGRAA 273 (570)
Q Consensus 237 GFdTA~k~~se~I~ni~~Da~S--~~k~~~fI--e--vMGR~a 273 (570)
.-++.++..++++.---..+.. ...-+|+| | +-|.-.
T Consensus 137 ~d~~vA~Raa~L~~~aE~~~~~~~~~~~vYvIGTEvP~pGGa~ 179 (421)
T PRK15052 137 APETVAERAAVLCQAAESVATDCQREQLSYVIGTEVPVPGGEA 179 (421)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeccccCCCCcch
Confidence 7799999999888744333332 22335666 3 455533
No 250
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.87 E-value=5.7e+02 Score=26.96 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=24.1
Q ss_pred CCChhhHHHHHHHHHHHHHHHhhhc-CCeeEEE--EecC
Q 008310 235 SFGFDTACKTFSEVIGNVMTDARSS-GKYYHFI--RLMG 270 (570)
Q Consensus 235 s~GFdTA~k~~se~I~ni~~Da~S~-~k~~~fI--evMG 270 (570)
++.=+.+.+++.++++.++ +.-+. .+|+|+= |+..
T Consensus 133 ~~~~~~t~~f~~~l~~E~~-~~f~~~~~~~HiGgDE~~~ 170 (326)
T cd06564 133 DISNPEAVKFVKALFDEYL-DGFNPKSDTVHIGADEYAG 170 (326)
T ss_pred cCCCHHHHHHHHHHHHHHH-HhcCCCCCEEEeccccccc
Confidence 6677888999999988885 44431 3677764 5554
No 251
>PRK12361 hypothetical protein; Provisional
Probab=22.80 E-value=1.3e+02 Score=34.17 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCC
Q 008310 173 FKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKC 229 (570)
Q Consensus 173 ~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~ 229 (570)
....++.+.+.+.|.+|++|||||...+.. .+.. .++++--+|.==-||+..
T Consensus 286 a~~la~~~~~~~~d~Viv~GGDGTl~ev~~---~l~~--~~~~lgiiP~GTgNdfAr 337 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGDGTVTEVAS---ELVN--TDITLGIIPLGTANALSH 337 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcHHHHHHH---HHhc--CCCCEEEecCCchhHHHH
Confidence 344455555677899999999999777642 2222 245667788777788763
No 252
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=22.72 E-value=6.2e+02 Score=23.43 Aligned_cols=114 Identities=17% Similarity=0.105 Sum_probs=62.8
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhh-hccccccCCceecccCCCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEF-IYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~-v~~~~n~GG~~~lGs~R~k~~ 168 (570)
..+|-+.+.||+.=....-+.... ++ ..|.+|+-. | ..++.++ ++..... ..++++-|-..-.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~--lr--~~G~eVi~L--G---------~~vp~e~i~~~a~~~-~~d~V~lS~~~~~ 66 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRA--LT--EAGFEVINL--G---------VMTSQEEFIDAAIET-DADAILVSSLYGH 66 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHH--HH--HCCCEEEEC--C---------CCCCHHHHHHHHHHc-CCCEEEEcCcccc
Confidence 356777777777654443333332 22 346776521 1 1233333 3333333 3356665544445
Q ss_pred ChHHHHHHHHHHHHcCC-CEEEEecCchhHH--HHHHHHHHHhcCCCCceEEEeec
Q 008310 169 TPEQFKQAEETVKKLDL-DGLVVIGGDDSNT--NACLLAENFRSKDMKTRVIGCPK 221 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~I-d~LviIGGddS~t--~A~~Lae~~~~~g~~i~VIgVPK 221 (570)
+..++...++.|++.++ +-.|++||.-+.. ......+.+++.|+ ..|.-|.
T Consensus 67 ~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~--~~vf~~~ 120 (137)
T PRK02261 67 GEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGF--DRVFPPG 120 (137)
T ss_pred CHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCC--CEEECcC
Confidence 67788999999999977 6678999976432 13444455566664 3454443
No 253
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=22.71 E-value=2.1e+02 Score=27.33 Aligned_cols=88 Identities=24% Similarity=0.329 Sum_probs=50.6
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIET 169 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~ 169 (570)
..+|.++ | -.|+ ++..+.+.+++.+|+.++.|.++||-+..+.. +.++.+... +.|++-.+=..++
T Consensus 46 ~~~v~ll--G-~~~~---~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~------~i~~~I~~~-~pdiv~vglG~Pk- 111 (171)
T cd06533 46 GLRVFLL--G-AKPE---VLEKAAERLRARYPGLKIVGYHHGYFGPEEEE------EIIERINAS-GADILFVGLGAPK- 111 (171)
T ss_pred CCeEEEE--C-CCHH---HHHHHHHHHHHHCCCcEEEEecCCCCChhhHH------HHHHHHHHc-CCCEEEEECCCCH-
Confidence 4677776 3 3343 44445566778899999999999997632211 123333333 4456544443442
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecC
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGG 193 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGG 193 (570)
|=.=+.+...+++-..++.+||
T Consensus 112 --QE~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 112 --QELWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred --HHHHHHHHHHHCCCCEEEEece
Confidence 2223344455556677777888
No 254
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=22.69 E-value=2.6e+02 Score=26.33 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=28.4
Q ss_pred EEEecCchhHHH--HHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHH
Q 008310 188 LVVIGGDDSNTN--ACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTAC 242 (570)
Q Consensus 188 LviIGGddS~t~--A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~ 242 (570)
+.++|-.||-.+ +..|...+.++|+++.+| .+|..+.+++ ..|.||..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi------K~~~~~~~~d-~~~~D~~~ 51 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATI------KHDHHDFDID-KNGKDSYR 51 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE------ecccccccCC-CccccHHH
Confidence 467786666555 477888888788765544 3443332222 34666654
No 255
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=22.67 E-value=1.5e+02 Score=32.79 Aligned_cols=53 Identities=26% Similarity=0.296 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecccc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTID 224 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTID 224 (570)
...|.++.++.+.... |.++|.||||+.... ..--|++++-..+|--+|---|
T Consensus 102 ~~gqak~l~e~~~t~~-Dii~VaGGDGT~~eV--VTGi~Rrr~~~~pv~~~P~G~~ 154 (535)
T KOG4435|consen 102 NQGQAKALAEAVDTQE-DIIYVAGGDGTIGEV--VTGIFRRRKAQLPVGFYPGGYD 154 (535)
T ss_pred cHHHHHHHHHHhccCC-CeEEEecCCCcHHHh--hHHHHhcccccCceeeccCccc
Confidence 3456677777776666 999999999997654 4555666665666666665444
No 256
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=22.63 E-value=8.3e+02 Score=24.93 Aligned_cols=71 Identities=28% Similarity=0.413 Sum_probs=49.1
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
.+...||+++..-..|-.+.++.|+.++++.. +..++ +..+.
T Consensus 62 ~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~--g~~~~---------------------------------~~~~~--- 103 (342)
T PRK10014 62 GQSGVIGLIVRDLSAPFYAELTAGLTEALEAQ--GRMVF---------------------------------LLQGG--- 103 (342)
T ss_pred CCCCEEEEEeCCCccchHHHHHHHHHHHHHHc--CCEEE---------------------------------EEeCC---
Confidence 34579999998888899999999999886542 22221 00010
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchh
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDS 196 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS 196 (570)
.+.+.....++.+...++||+++.+.+..
T Consensus 104 ~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 132 (342)
T PRK10014 104 KDGEQLAQRFSTLLNQGVDGVVIAGAAGS 132 (342)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 12345567788888899999999987643
No 257
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=22.59 E-value=2.4e+02 Score=26.15 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=35.2
Q ss_pred hhccccccCCceecccCCCCCCChHHHHHHHHHHHHcCC-CEEEEecCch
Q 008310 147 FIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDL-DGLVVIGGDD 195 (570)
Q Consensus 147 ~v~~~~n~GG~~~lGs~R~k~~~~e~~~~~~~~l~k~~I-d~LviIGGdd 195 (570)
.++..... ..+++|-|--.-.+.+.+++.++.|++.++ +..|++||.-
T Consensus 42 ~v~aa~~~-~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 42 FIDAAIET-DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred HHHHHHHc-CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCC
Confidence 44444444 346777665444567889999999999999 8889999984
No 258
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=22.57 E-value=2.1e+02 Score=33.03 Aligned_cols=112 Identities=21% Similarity=0.251 Sum_probs=70.7
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
....|||+.|..+.-=.|.-+.-+.+.++.--...-.+.|-.+.-++.++--+ .++| | ++-+.
T Consensus 41 ~kP~IgI~~s~~d~~p~h~hl~~l~~~vk~~i~~aGg~p~ef~t~~v~DGiam-----------G~~G--M----~~SL~ 103 (575)
T COG0129 41 GKPIIGIANSYNDMVPGHQHLKDLAQLVKEGIREAGGVPVEFGTIAVCDGIAM-----------GHDG--M----PYSLP 103 (575)
T ss_pred CCCeEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCceeEeCCCCccCcccc-----------CCCC--c----ccccc
Confidence 45699999999998777877766666555332211234555555555544321 1122 1 12233
Q ss_pred ChHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeec
Q 008310 169 TPEQF-KQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 221 (570)
Q Consensus 169 ~~e~~-~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 221 (570)
+.|-. ..+...+..+-+|++|.|||.|-.+-+..++-. -.+++.|.||.
T Consensus 104 SRelIAds~e~~~~~~~~Da~V~i~~CDKi~PG~lmaa~----r~niPaIfv~g 153 (575)
T COG0129 104 SRELIADSVEEVLSAHPFDGVVLIGGCDKITPGMLMAAA----RLNIPAIFVSG 153 (575)
T ss_pred cHHHHHHHHHHHHhccCcceEEEecCCCCccHHHHHHHH----hcCCCEEEecC
Confidence 44444 344556778889999999999999999998832 23577888874
No 259
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=22.48 E-value=1.3e+02 Score=28.77 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=33.0
Q ss_pred HHcCCCEEEEecCchhHHH---HHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHH
Q 008310 181 KKLDLDGLVVIGGDDSNTN---ACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSE 247 (570)
Q Consensus 181 ~k~~Id~LviIGGddS~t~---A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se 247 (570)
...+.|++|+.||.++... ...+.+++.+++ ++|.|| |.|+...+..+.-
T Consensus 36 ~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~--~PvlGI---------------C~G~Q~l~~~~Gg 88 (178)
T cd01744 36 LKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKK--IPIFGI---------------CLGHQLLALALGA 88 (178)
T ss_pred hhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCC--CCEEEE---------------CHHHHHHHHHcCC
Confidence 4468999999999865433 223334444443 567774 9999888877753
No 260
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.31 E-value=5.7e+02 Score=24.98 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=21.1
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQE 118 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~ 118 (570)
+||||+..-..|=...++.|+.+.++.
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~~ 27 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKA 27 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHHh
Confidence 578888777778888888888887654
No 261
>PHA02728 uncharacterized protein; Provisional
Probab=22.27 E-value=46 Score=30.80 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=12.7
Q ss_pred EeeccccCCCCCCCC
Q 008310 218 GCPKTIDGDLKCKDV 232 (570)
Q Consensus 218 gVPKTIDNDL~~~~i 232 (570)
.||-|+||||+++.-
T Consensus 43 lvpytvdndlpnpnd 57 (184)
T PHA02728 43 LVPYTVDNDLPNPND 57 (184)
T ss_pred ccceeccCCCCCCCc
Confidence 489999999998653
No 262
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=22.15 E-value=1.7e+02 Score=29.90 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=45.2
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+..+|||++..-..|-...++.|+.+.++. .+..++- .++. .
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~--~gy~~~i---------------------------------~~~~---~ 100 (327)
T TIGR02417 59 RSRTIGLVIPDLENYSYARIAKELEQQCRE--AGYQLLI---------------------------------ACSD---D 100 (327)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHH--CCCEEEE---------------------------------EeCC---C
Confidence 346899999776777778888888877643 2333321 0000 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCch
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDD 195 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGdd 195 (570)
+++...+.++.+...++||+|+.+.+.
T Consensus 101 ~~~~~~~~~~~l~~~~vdgiIi~~~~~ 127 (327)
T TIGR02417 101 NPDQEKVVIENLLARQVDALIVASCMP 127 (327)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 233445677788889999999988654
No 263
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=22.11 E-value=64 Score=30.79 Aligned_cols=50 Identities=22% Similarity=0.376 Sum_probs=36.5
Q ss_pred HHcCCCEEEEecCchhHHH---HHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHH
Q 008310 181 KKLDLDGLVVIGGDDSNTN---ACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSE 247 (570)
Q Consensus 181 ~k~~Id~LviIGGddS~t~---A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se 247 (570)
...+.|++|+-||.++... ...+.+++.+ .+++++|| |+|+...+..+..
T Consensus 39 ~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~--~~~PilGI---------------C~G~Q~la~~~G~ 91 (192)
T PF00117_consen 39 DLDDYDGIIISGGPGSPYDIEGLIELIREARE--RKIPILGI---------------CLGHQILAHALGG 91 (192)
T ss_dssp HTTTSSEEEEECESSSTTSHHHHHHHHHHHHH--TTSEEEEE---------------THHHHHHHHHTTH
T ss_pred hhcCCCEEEECCcCCccccccccccccccccc--cceEEEEE---------------eehhhhhHHhcCC
Confidence 5688999999999888654 2333344443 35678885 9999998888765
No 264
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.90 E-value=6.5e+02 Score=24.47 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=41.3
Q ss_pred EEEEecCC-CCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 93 IGVVLSGG-QAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 93 IGIv~sGG-~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
||||..-- ..|-...++.|+.+.++.. +..+ .+..+.. +++
T Consensus 2 i~vi~p~~~~~~~~~~~~~g~~~~~~~~--g~~~---------------------------------~~~~~~~---~~~ 43 (275)
T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAAAEED--GVEV---------------------------------IVLDANG---DVA 43 (275)
T ss_pred eEEEecccCCCHHHHHHHHHHHHHHHhc--CCEE---------------------------------EEEcCCc---CHH
Confidence 77777654 6788888888888876541 1111 1111111 334
Q ss_pred HHHHHHHHHHHcCCCEEEEecCch
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDD 195 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGdd 195 (570)
...+.++.+...++|++++.+.+.
T Consensus 44 ~~~~~~~~l~~~~vdgiii~~~~~ 67 (275)
T cd06317 44 RQAAQVEDLIAQKVDGIILWPTDG 67 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCc
Confidence 445667777888999999988764
No 265
>PRK04155 chaperone protein HchA; Provisional
Probab=21.75 E-value=7.6e+02 Score=25.91 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=24.9
Q ss_pred HHHHHHHHH--HcCCCEEEEecCchhHHH------HHHHHHHHhcCCC
Q 008310 173 FKQAEETVK--KLDLDGLVVIGGDDSNTN------ACLLAENFRSKDM 212 (570)
Q Consensus 173 ~~~~~~~l~--k~~Id~LviIGGddS~t~------A~~Lae~~~~~g~ 212 (570)
++.+.+.+. ..+-|+|+|-||-+.+.. +..|...|.+++.
T Consensus 134 l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K 181 (287)
T PRK04155 134 LADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDR 181 (287)
T ss_pred HHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCC
Confidence 444444444 467899999999887553 3444455555553
No 266
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=21.74 E-value=92 Score=30.22 Aligned_cols=53 Identities=15% Similarity=0.302 Sum_probs=35.4
Q ss_pred HHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHH
Q 008310 179 TVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFS 246 (570)
Q Consensus 179 ~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~s 246 (570)
.+++++.|+||+-||-++-..+....+.++....+++|.|| |+|+...+..+-
T Consensus 38 ~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGI---------------ClG~Q~la~a~G 90 (187)
T PRK08007 38 DIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGV---------------CLGHQAMAQAFG 90 (187)
T ss_pred HHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEE---------------CHHHHHHHHHcC
Confidence 34567899999999999887654333333222224667774 999988777653
No 267
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=21.66 E-value=8.4e+02 Score=24.59 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=53.3
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
+||||...-..|--.+++.|+-+++++. +.++.- ++.+. .+++
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~~--g~~v~~--------------------------------~~~~~---~d~~ 43 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKEL--GVDAIY--------------------------------VGPTT---ADAA 43 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHh--CCeEEE--------------------------------ECCCC---CCHH
Confidence 5888887767888999999998887652 333221 01111 1345
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
+....++.+...++||+|+.+.+.+... ..+ +.+++.+ ++||.+
T Consensus 44 ~~~~~i~~~~~~~~DgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~v 87 (298)
T cd06302 44 GQVQIIEDLIAQGVDAIAVVPNDPDALE-PVL-KKAREAG--IKVVTH 87 (298)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCHHHHH-HHH-HHHHHCC--CeEEEE
Confidence 5567777888889999999976643211 122 3334445 456654
No 268
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=21.62 E-value=1.2e+02 Score=32.85 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHH
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENF 207 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~ 207 (570)
-+.+.++++.|++.+||.|+-+||--..+.+..+|-..
T Consensus 71 ~~Tv~kaV~i~kee~idflLAVGGGSViD~tK~IAa~a 108 (384)
T COG1979 71 LETLMKAVEICKEENIDFLLAVGGGSVIDGTKFIAAAA 108 (384)
T ss_pred HHHHHHHHHHHHHcCceEEEEecCcchhhhHHHHHhhc
Confidence 46789999999999999999999988888888887554
No 269
>PRK14974 cell division protein FtsY; Provisional
Probab=21.33 E-value=4.4e+02 Score=28.32 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=16.1
Q ss_pred CEEEEecCchh--HHHHHHHHHHHhcCCCC
Q 008310 186 DGLVVIGGDDS--NTNACLLAENFRSKDMK 213 (570)
Q Consensus 186 d~LviIGGddS--~t~A~~Lae~~~~~g~~ 213 (570)
..++++|-+|+ -|.++.|+.++.++|.+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~ 170 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFS 170 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCe
Confidence 34556665555 34456677666666543
No 270
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=21.30 E-value=1.3e+02 Score=30.06 Aligned_cols=48 Identities=17% Similarity=0.320 Sum_probs=31.6
Q ss_pred cCCCEEEEecCchhHHHHH---HHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHH
Q 008310 183 LDLDGLVVIGGDDSNTNAC---LLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSE 247 (570)
Q Consensus 183 ~~Id~LviIGGddS~t~A~---~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se 247 (570)
.+.|+||+.||.++-..+. .+.+++.+. +++|+|| |+|+...+....-
T Consensus 45 ~~~dgliisGGp~~~~~~~~~~~~i~~~~~~--~~PiLGI---------------C~G~Qlla~a~GG 95 (214)
T PRK07765 45 AQFDGVLLSPGPGTPERAGASIDMVRACAAA--GTPLLGV---------------CLGHQAIGVAFGA 95 (214)
T ss_pred cCCCEEEECCCCCChhhcchHHHHHHHHHhC--CCCEEEE---------------ccCHHHHHHHhCC
Confidence 4799999999998754332 222333222 4567774 9999988877753
No 271
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=21.29 E-value=4.5e+02 Score=30.17 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeec
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 221 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 221 (570)
++++++++.+.+-+ .=++++||.-...+|......|.+ ..+++|+.-+.
T Consensus 188 ~~i~~aa~~L~~Ak-rPvIl~G~G~~~a~a~~~l~~lae-~~~~Pv~~t~~ 236 (550)
T COG0028 188 EAIRKAAELLAEAK-RPVILAGGGVRRAGASEELRELAE-KLGAPVVTTLM 236 (550)
T ss_pred HHHHHHHHHHHhCC-CCEEEECCCccccccHHHHHHHHH-HHCCCEEEccC
Confidence 78999999998888 677888877766664443333332 22456665543
No 272
>PRK10481 hypothetical protein; Provisional
Probab=21.28 E-value=4.3e+02 Score=26.87 Aligned_cols=107 Identities=12% Similarity=0.073 Sum_probs=64.7
Q ss_pred EEEEEecCCCCchhhH----------HHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceec-
Q 008310 92 KIGVVLSGGQAPGGHN----------VIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDML- 160 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nn----------vI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~l- 160 (570)
..-|+++=|+-||.++ .|.+++.+ ...+ +=+|+.-= |.+..+.....|+.. |++..
T Consensus 92 d~ivl~Ctgdfp~l~a~r~~l~~P~~~i~~lv~A---l~~g-~riGVitP--------~~~qi~~~~~kw~~~-G~~v~~ 158 (224)
T PRK10481 92 DVILLLCTGEFPSLTARNAILLEPSRILPPLVAA---IVGG-HQVGVIVP--------VEEQLAQQAQKWQVL-QKPPVF 158 (224)
T ss_pred CEEEEEecCCCCCccccCccccCchhhHHHHHHH---hcCC-CeEEEEEe--------CHHHHHHHHHHHHhc-CCceeE
Confidence 5556666667676555 23444433 2223 34555521 233334456778888 76532
Q ss_pred -ccCCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEE
Q 008310 161 -CSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVI 217 (570)
Q Consensus 161 -Gs~R~k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VI 217 (570)
+.+.+ ..+++.+.++.+.++..+.|.+|.-+-+=+...+..|.+.+ +++||
T Consensus 159 ~~aspy-~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~l-----g~PVI 210 (224)
T PRK10481 159 ALASPY-HGSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKAL-----DVPVL 210 (224)
T ss_pred eecCCC-CCCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHH-----CcCEE
Confidence 22222 35677888899999999999999988888876666666543 45565
No 273
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=21.22 E-value=7.7e+02 Score=24.00 Aligned_cols=87 Identities=13% Similarity=0.078 Sum_probs=52.3
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
+||||+..-..|=...++.|+.+.++. ..+.++. +..+ ..+++
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~-~~~~~~~---------------------------------~~~~---~~~~~ 43 (272)
T cd06301 1 KIGVSMANFDDNFLTLLRNAMKEHAKV-LGGVELQ---------------------------------FEDA---KNDVA 43 (272)
T ss_pred CeeEeecccCCHHHHHHHHHHHHHHHH-cCCcEEE---------------------------------EeCC---CCCHH
Confidence 588888877777777888888877654 1122211 1111 01345
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
.....++.+.+.++||+|+.+.+.+... ..+ +.+.+.+ ++||.+
T Consensus 44 ~~~~~i~~l~~~~vdgiii~~~~~~~~~-~~~-~~l~~~~--iPvv~~ 87 (272)
T cd06301 44 TQLSQVENFIAQGVDAIIVVPVDTAATA-PIV-KAANAAG--IPLVYV 87 (272)
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhhhH-HHH-HHHHHCC--CeEEEe
Confidence 5667788888999999999887643222 222 3333344 567765
No 274
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=21.02 E-value=7.5e+02 Score=23.81 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=52.8
Q ss_pred EEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChHH
Q 008310 93 IGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQ 172 (570)
Q Consensus 93 IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~ 172 (570)
||||+.....|-...++.|+.++++.. +++++ + ..+. .+++.
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~~--g~~~~-------------~--------------------~~~~---~~~~~ 43 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEAREA--GYGVL-------------L--------------------GDTR---SDPER 43 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHc--CCeEE-------------E--------------------ecCC---CChHH
Confidence 788888888889999999998887642 33332 0 0011 12344
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEee
Q 008310 173 FKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 220 (570)
Q Consensus 173 ~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 220 (570)
...+++.+...++||+++.+.+.... +.+.. .. +++||.+-
T Consensus 44 ~~~~~~~~~~~~vdgiii~~~~~~~~----~~~~~-~~--~ipvv~~~ 84 (267)
T cd06284 44 EQEYLDLLRRKQADGIILLDGSLPPT----ALTAL-AK--LPPIVQAC 84 (267)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCHH----HHHHH-hc--CCCEEEEe
Confidence 45667889999999999988764433 11222 23 45677663
No 275
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=20.94 E-value=7.6e+02 Score=23.81 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=51.6
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
.||||+.--..|-...++.|+-+.++.. +..+. +.... .+++
T Consensus 1 ~I~vv~~~~~~~~~~~~~~~i~~~~~~~--g~~v~---------------------------------~~~~~---~~~~ 42 (268)
T cd06323 1 TIGLSVSTLNNPFFVTLKDGAQKEAKEL--GYELT---------------------------------VLDAQ---NDAA 42 (268)
T ss_pred CeeEecccccCHHHHHHHHHHHHHHHHc--CceEE---------------------------------ecCCC---CCHH
Confidence 3788887778888999999998887642 22211 11111 1344
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
...++++.+...++||+++.+- ++......|.+ +.+.+ ++||.+
T Consensus 43 ~~~~~~~~~~~~~~dgii~~~~-~~~~~~~~l~~-l~~~~--ipvv~~ 86 (268)
T cd06323 43 KQLNDIEDLITRGVDAIIINPT-DSDAVVPAVKA-ANEAG--IPVFTI 86 (268)
T ss_pred HHHHHHHHHHHcCCCEEEEcCC-ChHHHHHHHHH-HHHCC--CcEEEE
Confidence 5567777788889999998653 33222233433 33334 567666
No 276
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=20.87 E-value=9.2e+02 Score=24.99 Aligned_cols=91 Identities=13% Similarity=0.101 Sum_probs=53.3
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+.++||++...-..|..+.++.|+.+.++... +..++ +..+. .
T Consensus 23 ~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g-~~~~~---------------------------------~~~~~---~ 65 (330)
T PRK15395 23 ADTRIGVTIYKYDDNFMSVVRKAIEKDAKAAP-DVQLL---------------------------------MNDSQ---N 65 (330)
T ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHHhcC-CeEEE---------------------------------EecCC---C
Confidence 44788888877677888888888887765421 11111 11111 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEee
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 220 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 220 (570)
+.+...+.++.+...++|++++.+.+..... ..+ +.+++.++ +||.+=
T Consensus 66 ~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~l-~~l~~~gi--PvV~vd 113 (330)
T PRK15395 66 DQSKQNDQIDVLLAKGVKALAINLVDPAAAP-TVI-EKARGQDV--PVVFFN 113 (330)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccCHHHHH-HHH-HHHHHCCC--cEEEEc
Confidence 2233345667788999999999987653332 233 33444454 566553
No 277
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=20.77 E-value=1.2e+02 Score=28.34 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=25.9
Q ss_pred EEEecCchh--HHHHHHHHHHHhcCCCCceEEEeec
Q 008310 188 LVVIGGDDS--NTNACLLAENFRSKDMKTRVIGCPK 221 (570)
Q Consensus 188 LviIGGddS--~t~A~~Lae~~~~~g~~i~VIgVPK 221 (570)
+++.|.||| -|.+..|++++.+.|..+.++.-|.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~ 38 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPG 38 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 678888887 5568999999988887766665554
No 278
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=20.69 E-value=7.4e+02 Score=23.57 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeCCcc
Q 008310 108 VIAGIFDYLQERTKGSKLYGFRGGPA 133 (570)
Q Consensus 108 vI~gl~~~l~~~~~~~~v~Gf~~G~~ 133 (570)
++..+...+++.+|+.++.|...||-
T Consensus 60 ~~~~~~~~l~~~yP~l~ivg~~~g~f 85 (172)
T PF03808_consen 60 VLEKAAANLRRRYPGLRIVGYHHGYF 85 (172)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 34444455667788899998888875
No 279
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=20.69 E-value=7.1e+02 Score=25.10 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCc
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGD 194 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGd 194 (570)
++....++.+...++||+++.+.+
T Consensus 44 ~~~~~~i~~l~~~~vDgiIi~~~~ 67 (295)
T TIGR02955 44 DKQLAQIEQCKSWGADAILLGTVS 67 (295)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCC
Confidence 445578888999999999998765
No 280
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=20.61 E-value=1.7e+02 Score=31.00 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=28.1
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeec
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 221 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 221 (570)
.+|++|+--|.|+ ++.=++.+|++.+-+++||||..
T Consensus 183 ~~d~vv~~vGtGg--t~~Gi~~~~k~~~~~~~vigVe~ 218 (331)
T PRK03910 183 DFDAVVVASGSGG--THAGLAAGLAALGPDIPVIGVTV 218 (331)
T ss_pred CCCEEEEeCCcHH--HHHHHHHHHHHhCCCCeEEEEEe
Confidence 4899988888877 45556777877777899999985
No 281
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=20.61 E-value=1.4e+02 Score=28.37 Aligned_cols=31 Identities=23% Similarity=0.142 Sum_probs=23.4
Q ss_pred EEEecCchhHHHHHHHHHHHhcCCCCceEEE
Q 008310 188 LVVIGGDDSNTNACLLAENFRSKDMKTRVIG 218 (570)
Q Consensus 188 LviIGGddS~t~A~~Lae~~~~~g~~i~VIg 218 (570)
+.+-||-||...+..|.+.+...|.++.+|.
T Consensus 4 va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~ 34 (189)
T TIGR02432 4 VAVSGGVDSMALLHLLLKLQPKLKIRLIAAH 34 (189)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 5678999999999999887665566644444
No 282
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=20.59 E-value=8e+02 Score=23.94 Aligned_cols=94 Identities=14% Similarity=0.089 Sum_probs=54.6
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
||||++..-.-|....++.|+-+.++... ..|+ + ++ -++..+.. +.+
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~--------~~g~------~-~~---------------l~i~~~~~---~~~ 47 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELK--------KAGL------I-SE---------------FIVTSADG---DVA 47 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhh--------ccCC------e-eE---------------EEEecCCC---CHH
Confidence 68899888888888888888887765431 1111 0 00 01111211 234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 222 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 222 (570)
...+.++.+...++|++|+.+.+.... ...+ +.+.+.| ++||.+-..
T Consensus 48 ~~~~~~~~~~~~~vdgiIi~~~~~~~~-~~~l-~~~~~~~--iPvv~~~~~ 94 (272)
T cd06300 48 QQIADIRNLIAQGVDAIIINPASPTAL-NPVI-EEACEAG--IPVVSFDGT 94 (272)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCChhhh-HHHH-HHHHHCC--CeEEEEecC
Confidence 456777778888999999998763211 1122 3333334 568877443
No 283
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=20.56 E-value=2e+02 Score=27.09 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHH-HHHHHHHHHhcCCCCce
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNT-NACLLAENFRSKDMKTR 215 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t-~A~~Lae~~~~~g~~i~ 215 (570)
+.++..+.++.+. ..+.++++-||+ -+. ....|.+++++.|+++.
T Consensus 47 t~eel~~~I~~~~-~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~ 92 (147)
T TIGR02826 47 TPEYLTKTLDKYR-SLISCVLFLGGE-WNREALLSLLKIFKEKGLKTC 92 (147)
T ss_pred CHHHHHHHHHHhC-CCCCEEEEechh-cCHHHHHHHHHHHHHCCCCEE
Confidence 3444444444333 247899999999 442 35567777777776543
No 284
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=20.53 E-value=85 Score=30.05 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCC
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDV 232 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~i 232 (570)
.++.+++.++.. .+-++||||-.-...+..+++ .+-+--|+.+.+.|..-+.+
T Consensus 79 s~~~al~~~~~~-~~~i~ViGG~~iy~~~l~~~d-------~l~lT~I~~~~~~D~~fP~~ 131 (161)
T PF00186_consen 79 SLEEALELAKDK-DEEIFVIGGAEIYEQFLPYAD-------RLYLTRIDGDFEGDTFFPEI 131 (161)
T ss_dssp SHHHHHHHHTTS-ESEEEEEE-HHHHHHHHHGES-------EEEEEEESSESTTSEECSSC
T ss_pred CHHHHHHHhhcc-CCcEEEECCHHHHHHHHHhCC-------eEEEEEEcCccccceECCCC
Confidence 367777755555 899999999998887766443 46778889999999876654
No 285
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=20.46 E-value=9e+02 Score=24.48 Aligned_cols=88 Identities=19% Similarity=0.114 Sum_probs=49.7
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
||||+..--..|-...++.|+-+.++....+.++. + ..+ . .+++
T Consensus 1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~~~g~~~~--------------------------------~-~~~--~-~~~~ 44 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFT--------------------------------F-YDA--K-NNQS 44 (303)
T ss_pred CeEEEeeCCCChHHHHHHHHHHHHHHhhCCCeeEE--------------------------------E-ecC--C-CCHH
Confidence 57777766666667777777777654421111111 0 111 1 1345
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
.....++.+...++|++|+.+.+.... ...+ +.+.+.|+ +||.+
T Consensus 45 ~q~~~i~~l~~~~vdgiii~~~~~~~~-~~~~-~~~~~~gi--PvV~~ 88 (303)
T cd01539 45 TQNEQIDTALAKGVDLLAVNLVDPTAA-QTVI-NKAKQKNI--PVIFF 88 (303)
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhhH-HHHH-HHHHHCCC--CEEEe
Confidence 556778888999999999988664321 1222 33344454 56654
No 286
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.29 E-value=2.1e+02 Score=28.02 Aligned_cols=41 Identities=10% Similarity=0.255 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
+...+.+.+...++|++++.+.+.. . .+ +.+.+.+ ++||.+
T Consensus 46 ~~~~~~~~l~~~~vdgiii~~~~~~-~---~~-~~l~~~~--ipvV~~ 86 (268)
T cd06277 46 EEFELPSFLEDGKVDGIILLGGIST-E---YI-KEIKELG--IPFVLV 86 (268)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCh-H---HH-HHHhhcC--CCEEEE
Confidence 3456677788899999999986543 1 12 3344444 567754
No 287
>TIGR01630 psiM2_ORF9 phage uncharacterized protein (putative large terminase), C-terminal domain. This model represents the C-terminal region of a set of phage proteins typically about 400-500 amino acids in length, although some members are considerably shorter. An article on Methanobacterium phage Psi-M2 (PubMed:9791169) calls the member from that phage, ORF9, a putative large terminase subunit, and ORF8 a candidate terminase small subunit. Most proteins in this family have an apparent P-loop nucleotide-binding sequence toward the N-terminus.
Probab=20.13 E-value=3.3e+02 Score=24.81 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=38.9
Q ss_pred ecccCCCCCCChHHHHHHHHHHHHcCCCEEEE-ecCchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 008310 159 MLCSGRDKIETPEQFKQAEETVKKLDLDGLVV-IGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 222 (570)
Q Consensus 159 ~lGs~R~k~~~~e~~~~~~~~l~k~~Id~Lvi-IGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 222 (570)
+|-..|.+..-++..+.+.+..++++.+.+++ +.+.+.. .+..|.+.+.+++..++|++++-|
T Consensus 18 vld~~~~r~~~~~~~~~i~~~~~~~~~~~~~~E~~~~~~~-~~~~l~~~l~~~~~~~~i~~~~~~ 81 (142)
T TIGR01630 18 VLDAIYDKEPPPETERLVIRLLNAHRVNLAIIESNQEGKS-FGRSLVKILKEKGIRTPARAVYPS 81 (142)
T ss_pred EEEEEeccCChHHHHHHHHHHHHHcCCcceeeeccccchH-HHHHHHHHHHhhCCCCCceeeCCC
Confidence 34444556555677788888888999888643 2222222 233355566666777778887764
Done!