Query 008310
Match_columns 570
No_of_seqs 249 out of 1369
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 23:10:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f48_A Diphosphate--fructose-6 100.0 1E-139 4E-144 1153.1 45.7 538 20-560 2-555 (555)
2 3hno_A Pyrophosphate-dependent 100.0 1.2E-82 4E-87 681.1 32.1 342 90-498 3-362 (419)
3 1zxx_A 6-phosphofructokinase; 100.0 2.4E-79 8.1E-84 635.0 33.2 302 90-496 1-303 (319)
4 2hig_A 6-phospho-1-fructokinas 100.0 5.1E-79 1.8E-83 660.0 37.0 352 87-523 94-449 (487)
5 1pfk_A Phosphofructokinase; tr 100.0 3E-79 1E-83 634.4 33.6 300 90-494 2-303 (320)
6 4a3s_A 6-phosphofructokinase; 100.0 3.4E-76 1.2E-80 612.6 31.1 302 90-496 1-303 (319)
7 3o8l_A 6-phosphofructokinase, 100.0 4.6E-72 1.6E-76 632.8 28.1 343 87-520 12-380 (762)
8 3o8o_B 6-phosphofructokinase s 100.0 5.7E-71 2E-75 624.1 34.0 342 90-521 3-371 (766)
9 3o8l_A 6-phosphofructokinase, 100.0 5.1E-71 1.8E-75 624.2 32.0 328 88-507 398-744 (762)
10 3o8o_A 6-phosphofructokinase s 100.0 9.7E-71 3.3E-75 622.1 32.4 342 89-521 4-371 (787)
11 3opy_B 6-phosphofructo-1-kinas 100.0 2.5E-70 8.6E-75 625.1 30.6 344 88-521 179-549 (941)
12 3opy_A 6-phosphofructo-1-kinas 100.0 7.8E-70 2.7E-74 619.3 32.9 345 88-523 208-578 (989)
13 3o8o_A 6-phosphofructokinase s 100.0 2.9E-69 1E-73 610.1 31.3 340 87-517 390-773 (787)
14 3opy_B 6-phosphofructo-1-kinas 100.0 3.6E-68 1.2E-72 607.3 31.0 329 88-507 569-927 (941)
15 3o8o_B 6-phosphofructokinase s 100.0 4.8E-68 1.6E-72 600.3 31.1 329 88-507 391-751 (766)
16 3opy_A 6-phosphofructo-1-kinas 100.0 4.6E-67 1.6E-71 596.6 29.2 328 88-507 596-972 (989)
17 3m9w_A D-xylose-binding peripl 89.4 15 0.00051 35.7 17.2 105 90-240 2-106 (313)
18 2i2c_A Probable inorganic poly 84.7 0.75 2.6E-05 45.9 4.5 46 173-221 17-69 (272)
19 2an1_A Putative kinase; struct 84.5 0.44 1.5E-05 47.7 2.7 90 90-220 5-94 (292)
20 3l6u_A ABC-type sugar transpor 78.5 17 0.0006 34.7 11.8 108 88-241 6-113 (293)
21 1oj7_A Hypothetical oxidoreduc 76.6 4 0.00014 42.9 6.9 55 169-223 91-161 (408)
22 3l49_A ABC sugar (ribose) tran 75.8 55 0.0019 31.0 17.4 154 89-294 4-163 (291)
23 3egc_A Putative ribose operon 74.2 9 0.00031 36.8 8.3 104 88-240 6-109 (291)
24 2qv7_A Diacylglycerol kinase D 73.4 4.1 0.00014 41.5 5.8 44 182-228 78-121 (337)
25 3g1w_A Sugar ABC transporter; 73.1 67 0.0023 30.7 19.4 107 89-240 3-109 (305)
26 3gbv_A Putative LACI-family tr 73.0 40 0.0014 32.1 12.7 110 88-240 6-117 (304)
27 1jq5_A Glycerol dehydrogenase; 71.3 9.1 0.00031 39.5 7.9 48 170-222 72-119 (370)
28 3tb6_A Arabinose metabolism tr 70.3 40 0.0014 32.0 11.9 105 91-240 16-121 (298)
29 1z0s_A Probable inorganic poly 70.0 2.6 8.8E-05 42.6 3.3 53 184-254 68-122 (278)
30 3ox4_A Alcohol dehydrogenase 2 69.9 8.8 0.0003 40.0 7.5 57 169-225 73-142 (383)
31 3uhj_A Probable glycerol dehyd 69.8 9.3 0.00032 40.0 7.7 49 169-222 91-139 (387)
32 3o74_A Fructose transport syst 69.6 23 0.00078 33.3 9.9 103 90-240 2-104 (272)
33 3iv7_A Alcohol dehydrogenase I 68.8 8 0.00027 40.2 6.9 50 169-223 73-122 (364)
34 1rrm_A Lactaldehyde reductase; 68.7 8.7 0.0003 39.8 7.2 56 169-224 73-143 (386)
35 2bon_A Lipid kinase; DAG kinas 68.2 7.4 0.00025 39.5 6.4 46 182-228 80-125 (332)
36 3jy6_A Transcriptional regulat 67.0 48 0.0016 31.4 11.7 103 88-240 5-107 (276)
37 1u0t_A Inorganic polyphosphate 66.7 4.1 0.00014 41.2 4.0 33 183-220 74-106 (307)
38 3rf7_A Iron-containing alcohol 66.5 8.9 0.0003 40.1 6.7 55 169-223 91-161 (375)
39 3e3m_A Transcriptional regulat 66.5 39 0.0013 33.6 11.4 88 88-219 68-155 (355)
40 3jzd_A Iron-containing alcohol 66.5 9 0.00031 39.7 6.7 50 169-223 74-123 (358)
41 3hl0_A Maleylacetate reductase 66.2 12 0.00041 38.7 7.5 50 169-223 72-121 (353)
42 3dbi_A Sugar-binding transcrip 66.1 46 0.0016 32.7 11.7 105 88-240 59-165 (338)
43 2fep_A Catabolite control prot 65.7 51 0.0017 31.6 11.7 104 88-240 14-117 (289)
44 3clh_A 3-dehydroquinate syntha 65.3 11 0.00036 38.8 6.9 52 169-223 67-121 (343)
45 3d8u_A PURR transcriptional re 65.2 41 0.0014 31.7 10.7 102 90-240 3-104 (275)
46 3k4h_A Putative transcriptiona 64.3 75 0.0026 30.0 12.5 105 88-240 6-115 (292)
47 1xah_A Sadhqs, 3-dehydroquinat 64.1 11 0.00036 38.9 6.6 52 169-223 72-126 (354)
48 3bfj_A 1,3-propanediol oxidore 64.1 15 0.0005 38.2 7.8 55 169-223 77-144 (387)
49 2rgy_A Transcriptional regulat 63.6 48 0.0016 31.7 11.0 103 89-240 7-112 (290)
50 3pfn_A NAD kinase; structural 63.2 4.1 0.00014 42.7 3.3 118 88-253 36-162 (365)
51 3gv0_A Transcriptional regulat 63.2 27 0.00093 33.4 9.1 104 88-240 6-111 (288)
52 3kjx_A Transcriptional regulat 62.7 51 0.0017 32.5 11.3 88 88-219 66-153 (344)
53 1vlj_A NADH-dependent butanol 62.7 14 0.00049 38.6 7.5 55 169-223 86-153 (407)
54 1o2d_A Alcohol dehydrogenase, 62.6 10 0.00035 39.3 6.2 58 169-226 83-153 (371)
55 1yt5_A Inorganic polyphosphate 62.2 3.1 0.00011 41.0 2.1 32 183-220 40-71 (258)
56 3rot_A ABC sugar transporter, 61.8 1.1E+02 0.0038 29.1 14.3 71 90-196 3-73 (297)
57 3afo_A NADH kinase POS5; alpha 60.3 3.7 0.00012 43.4 2.3 37 89-126 40-76 (388)
58 1sg6_A Pentafunctional AROM po 59.8 16 0.00053 38.2 7.1 52 169-223 85-141 (393)
59 3brq_A HTH-type transcriptiona 59.0 97 0.0033 29.2 12.2 88 88-219 17-107 (296)
60 2o20_A Catabolite control prot 59.0 95 0.0033 30.3 12.5 70 89-196 62-131 (332)
61 3ksm_A ABC-type sugar transpor 58.6 1.2E+02 0.004 28.2 13.5 106 91-240 1-107 (276)
62 3qk7_A Transcriptional regulat 58.1 17 0.00059 35.1 6.7 102 89-240 5-110 (294)
63 3av3_A Phosphoribosylglycinami 57.0 33 0.0011 32.8 8.3 99 90-205 3-102 (212)
64 3c3k_A Alanine racemase; struc 56.7 90 0.0031 29.6 11.6 102 89-240 7-108 (285)
65 3ce9_A Glycerol dehydrogenase; 55.6 9.9 0.00034 38.9 4.6 52 169-226 74-125 (354)
66 1ujn_A Dehydroquinate synthase 55.4 19 0.00063 37.0 6.6 52 169-223 66-120 (348)
67 3okf_A 3-dehydroquinate syntha 55.3 19 0.00063 38.0 6.7 52 169-223 105-159 (390)
68 1zq1_A Glutamyl-tRNA(Gln) amid 53.7 39 0.0013 36.1 9.0 71 169-248 150-223 (438)
69 3qbe_A 3-dehydroquinate syntha 52.7 22 0.00075 37.1 6.7 52 169-223 85-139 (368)
70 1meo_A Phosophoribosylglycinam 52.7 38 0.0013 32.4 7.9 94 91-204 1-98 (209)
71 1qpz_A PURA, protein (purine n 50.1 99 0.0034 30.3 11.0 71 88-196 56-126 (340)
72 3p9x_A Phosphoribosylglycinami 49.7 62 0.0021 31.0 8.9 100 90-206 2-102 (211)
73 3auf_A Glycinamide ribonucleot 47.8 85 0.0029 30.3 9.7 102 87-205 19-121 (229)
74 2gru_A 2-deoxy-scyllo-inosose 47.7 28 0.00095 36.0 6.5 52 169-223 76-130 (368)
75 3cs3_A Sugar-binding transcrip 47.7 91 0.0031 29.4 9.9 31 88-118 6-36 (277)
76 3hs3_A Ribose operon repressor 47.3 65 0.0022 30.6 8.8 99 87-240 7-107 (277)
77 3huu_A Transcription regulator 46.9 1.5E+02 0.0051 28.3 11.5 104 88-240 20-128 (305)
78 8abp_A L-arabinose-binding pro 46.4 1.3E+02 0.0043 28.7 10.8 87 90-219 2-88 (306)
79 1kq3_A Glycerol dehydrogenase; 45.5 19 0.00064 37.2 4.8 48 169-222 80-127 (376)
80 1ta9_A Glycerol dehydrogenase; 44.0 21 0.00073 38.0 5.1 47 170-222 132-178 (450)
81 3o1i_D Periplasmic protein TOR 43.8 1.1E+02 0.0037 29.0 9.8 72 89-196 4-75 (304)
82 3h5o_A Transcriptional regulat 43.4 2.4E+02 0.0082 27.4 12.6 88 88-219 60-147 (339)
83 3l8m_A Probable thiamine pyrop 42.6 40 0.0014 32.2 6.3 81 121-205 21-115 (212)
84 3o1l_A Formyltetrahydrofolate 42.4 1.2E+02 0.004 30.7 10.0 98 89-205 104-201 (302)
85 3kke_A LACI family transcripti 42.4 2.2E+02 0.0074 27.2 11.8 103 88-240 13-115 (303)
86 1i60_A IOLI protein; beta barr 41.3 2.2E+02 0.0077 26.5 13.3 50 172-221 15-69 (278)
87 1agx_A Glutaminase-asparaginas 40.5 48 0.0016 33.9 6.9 70 169-248 63-136 (331)
88 3k9c_A Transcriptional regulat 40.5 54 0.0018 31.4 7.0 102 87-240 9-110 (289)
89 1jkx_A GART;, phosphoribosylgl 40.2 1E+02 0.0035 29.3 8.8 98 91-205 1-99 (212)
90 2yxb_A Coenzyme B12-dependent 39.9 1.2E+02 0.004 27.4 8.8 93 89-197 17-111 (161)
91 2ioy_A Periplasmic sugar-bindi 39.6 2.2E+02 0.0075 26.7 11.3 104 91-240 2-105 (283)
92 2kwv_A RAD30 homolog B, DNA po 39.4 11 0.00038 27.8 1.3 18 370-387 18-35 (48)
93 2dri_A D-ribose-binding protei 39.3 1.6E+02 0.0055 27.6 10.2 104 91-240 2-105 (271)
94 3lkv_A Uncharacterized conserv 38.3 2.6E+02 0.009 27.1 11.9 73 87-192 5-77 (302)
95 3s40_A Diacylglycerol kinase; 38.0 34 0.0012 34.1 5.3 42 184-228 63-104 (304)
96 2vk2_A YTFQ, ABC transporter p 37.7 2.7E+02 0.0094 26.4 12.3 69 90-196 2-70 (306)
97 1dbq_A Purine repressor; trans 37.4 2.6E+02 0.0089 26.1 13.8 70 89-196 6-75 (289)
98 3clk_A Transcription regulator 37.3 1.4E+02 0.0049 28.2 9.5 90 89-221 7-96 (290)
99 3brs_A Periplasmic binding pro 37.1 2.2E+02 0.0076 26.6 10.8 107 90-240 5-113 (289)
100 3uug_A Multiple sugar-binding 36.6 2.9E+02 0.0099 26.4 20.9 105 90-240 3-108 (330)
101 1iv0_A Hypothetical protein; r 36.4 25 0.00084 29.7 3.3 32 197-228 37-68 (98)
102 2hsg_A Glucose-resistance amyl 35.0 95 0.0033 30.3 8.0 104 88-240 58-161 (332)
103 8abp_A L-arabinose-binding pro 34.8 2.2E+02 0.0076 26.8 10.5 47 171-219 181-231 (306)
104 2rjo_A Twin-arginine transloca 34.4 2.8E+02 0.0094 26.8 11.3 91 89-221 4-96 (332)
105 4fle_A Esterase; structural ge 33.5 52 0.0018 29.2 5.3 82 187-290 4-89 (202)
106 3q12_A Pantoate--beta-alanine 32.3 82 0.0028 31.8 6.8 54 254-307 18-83 (287)
107 3e61_A Putative transcriptiona 31.6 3.2E+02 0.011 25.3 12.5 99 89-240 7-106 (277)
108 2ywr_A Phosphoribosylglycinami 31.4 1.5E+02 0.0051 28.1 8.4 97 90-203 1-98 (216)
109 3dzc_A UDP-N-acetylglucosamine 31.0 1E+02 0.0035 31.5 7.7 117 88-220 23-142 (396)
110 1o7j_A L-asparaginase; atomic 30.8 80 0.0027 32.2 6.7 70 169-248 66-139 (327)
111 3lm8_A Thiamine pyrophosphokin 30.5 47 0.0016 32.0 4.6 90 123-216 26-129 (222)
112 3nxk_A Cytoplasmic L-asparagin 30.5 82 0.0028 32.3 6.7 49 169-219 70-121 (334)
113 1jak_A Beta-N-acetylhexosamini 30.4 2.7E+02 0.0091 30.1 11.1 113 150-269 156-322 (512)
114 3lup_A DEGV family protein; PS 30.4 3.1E+02 0.011 27.1 10.8 167 141-326 44-233 (285)
115 3gyb_A Transcriptional regulat 30.3 1.8E+02 0.0062 27.1 8.9 39 89-129 4-42 (280)
116 3s4y_A Thiamin pyrophosphokina 30.1 1.2E+02 0.004 29.7 7.5 111 91-214 21-157 (247)
117 4b4t_W RPN10, 26S proteasome r 29.8 1E+02 0.0035 30.6 7.0 50 171-220 89-145 (268)
118 2wlt_A L-asparaginase; hydrola 29.2 81 0.0028 32.2 6.4 70 169-248 66-139 (332)
119 4pga_A Glutaminase-asparaginas 29.0 97 0.0033 31.8 6.9 49 169-219 71-123 (337)
120 4ds3_A Phosphoribosylglycinami 28.9 1.4E+02 0.0047 28.5 7.6 95 89-203 6-104 (209)
121 3hut_A Putative branched-chain 28.2 3E+02 0.01 26.6 10.4 33 89-121 3-37 (358)
122 3d02_A Putative LACI-type tran 28.2 3.8E+02 0.013 25.1 11.2 89 90-219 4-92 (303)
123 3lp6_A Phosphoribosylaminoimid 27.1 60 0.002 30.4 4.5 48 169-222 47-94 (174)
124 3lkb_A Probable branched-chain 27.1 3.5E+02 0.012 26.6 10.8 129 87-251 4-139 (392)
125 1tjy_A Sugar transport protein 27.0 2.1E+02 0.0072 27.6 8.9 88 91-219 4-91 (316)
126 2x7x_A Sensor protein; transfe 26.8 4.3E+02 0.015 25.3 17.6 106 89-240 5-110 (325)
127 1wsa_A Asparaginase, asparagin 26.5 81 0.0028 32.2 5.8 70 169-248 64-137 (330)
128 3mxt_A Pantothenate synthetase 26.1 1.4E+02 0.0048 30.1 7.3 53 254-307 18-82 (285)
129 2him_A L-asparaginase 1; hydro 26.0 96 0.0033 32.1 6.3 71 169-248 84-156 (358)
130 3obi_A Formyltetrahydrofolate 25.0 3.1E+02 0.01 27.3 9.7 122 55-205 61-186 (288)
131 2iks_A DNA-binding transcripti 25.0 4.3E+02 0.015 24.8 10.6 105 88-240 18-122 (293)
132 3h75_A Periplasmic sugar-bindi 24.7 4.8E+02 0.017 25.2 13.5 30 90-119 3-33 (350)
133 3k8d_A 3-deoxy-manno-octuloson 24.6 4.6E+02 0.016 25.2 10.8 116 90-221 17-146 (264)
134 3szu_A ISPH, 4-hydroxy-3-methy 24.3 95 0.0032 31.9 5.7 45 171-217 213-257 (328)
135 3h3e_A Uncharacterized protein 24.0 1.7E+02 0.0057 28.9 7.4 76 95-207 175-250 (267)
136 1vdr_A DHFR, dihydrofolate red 23.6 41 0.0014 30.3 2.7 51 172-229 81-131 (162)
137 3miz_A Putative transcriptiona 23.5 1.4E+02 0.0048 28.4 6.7 72 87-196 10-82 (301)
138 3fst_A 5,10-methylenetetrahydr 23.4 81 0.0028 31.9 5.0 104 109-220 41-153 (304)
139 1wls_A L-asparaginase; structu 23.4 1E+02 0.0035 31.4 5.9 70 169-247 56-127 (328)
140 3g1w_A Sugar ABC transporter; 23.2 4.5E+02 0.015 24.7 10.3 46 170-219 172-220 (305)
141 1nu0_A Hypothetical protein YQ 23.1 49 0.0017 29.6 3.0 28 200-227 42-69 (138)
142 3fys_A Protein DEGV; fatty aci 23.1 1.9E+02 0.0066 29.2 7.8 168 142-328 76-266 (315)
143 2pn1_A Carbamoylphosphate synt 23.0 5.1E+02 0.018 24.9 12.6 43 169-212 57-99 (331)
144 2d6f_A Glutamyl-tRNA(Gln) amid 22.9 1.3E+02 0.0043 32.2 6.6 70 169-248 149-221 (435)
145 3trh_A Phosphoribosylaminoimid 22.4 64 0.0022 30.1 3.7 48 169-222 46-93 (169)
146 2qip_A Protein of unknown func 22.1 39 0.0013 30.6 2.2 49 172-223 95-145 (165)
147 3dnf_A ISPH, LYTB, 4-hydroxy-3 22.0 96 0.0033 31.4 5.2 54 171-226 197-250 (297)
148 3apt_A Methylenetetrahydrofola 21.6 66 0.0023 32.5 4.0 102 110-220 32-150 (310)
149 3bq9_A Predicted rossmann fold 21.4 3.2E+02 0.011 29.3 9.2 37 91-129 174-212 (460)
150 3inn_A Pantothenate synthetase 21.4 1.5E+02 0.0052 30.2 6.5 54 254-307 36-101 (314)
151 3h5t_A Transcriptional regulat 21.4 59 0.002 32.4 3.6 57 173-240 117-173 (366)
152 3ors_A N5-carboxyaminoimidazol 21.2 62 0.0021 30.0 3.3 49 169-223 43-91 (163)
153 3bbl_A Regulatory protein of L 21.1 59 0.002 31.0 3.4 103 89-240 3-109 (287)
154 3oow_A Phosphoribosylaminoimid 21.1 95 0.0033 28.8 4.5 48 169-222 45-92 (166)
155 3nrb_A Formyltetrahydrofolate 21.1 3.9E+02 0.013 26.5 9.5 100 88-206 86-186 (287)
156 2nrr_A Uvrabc system protein C 21.0 1E+02 0.0036 28.4 4.8 93 165-261 53-153 (159)
157 2fn9_A Ribose ABC transporter, 20.9 5.1E+02 0.017 24.1 13.8 87 91-219 3-89 (290)
158 2g0t_A Conserved hypothetical 20.8 3.9E+02 0.013 27.4 9.7 105 181-291 165-279 (350)
159 3tqr_A Phosphoribosylglycinami 20.7 2.5E+02 0.0084 26.8 7.6 96 89-205 4-103 (215)
160 3kuu_A Phosphoribosylaminoimid 20.6 62 0.0021 30.3 3.2 48 169-222 52-99 (174)
161 3qc0_A Sugar isomerase; TIM ba 20.5 4.1E+02 0.014 24.6 9.3 48 172-219 19-66 (275)
162 1o4v_A Phosphoribosylaminoimid 20.4 65 0.0022 30.4 3.3 49 169-223 53-101 (183)
163 2gzm_A Glutamate racemase; enz 20.2 4.3E+02 0.015 25.5 9.5 91 92-219 5-95 (267)
164 3sho_A Transcriptional regulat 20.1 2.4E+02 0.0081 25.1 7.2 48 169-220 25-72 (187)
165 3lou_A Formyltetrahydrofolate 20.0 4.2E+02 0.014 26.4 9.5 122 55-205 67-191 (292)
166 1mkz_A Molybdenum cofactor bio 20.0 78 0.0027 29.0 3.8 29 168-196 52-81 (172)
No 1
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=1.1e-139 Score=1153.06 Aligned_cols=538 Identities=46% Similarity=0.836 Sum_probs=512.3
Q ss_pred CCCHhhhhhcCCCCCCccccccc---cceecCCCCCCCCChhHHHhhCCcccCCCeeEEecCCccccccCCCCccEEEEE
Q 008310 20 IYTELQISRMNVSLPLPSVLKNT---FNVVDDAASSAAGDPEEIKKLFPKFYGQPSARLVECDPMACTLMENKSLKIGVV 96 (570)
Q Consensus 20 ~~s~l~~~r~~~~p~lp~~l~~~---~~~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~IGIv 96 (570)
++|+||++|+.|+|+||++|++. +++++++++++..++++|+++|||||++|+++|+++.. .....+++||||+
T Consensus 2 ~~s~l~~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~---~~~~~~~~~igIl 78 (555)
T 2f48_A 2 NTSLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGES---SLSFSKALNIGII 78 (555)
T ss_dssp --CHHHHHHTTCCCCCCGGGGSCGGGEEEEECCCCCCSSCHHHHHHHTTTTTTCCCEEEEESCC---CCSCCSCCEEEEE
T ss_pred CCCHHHHhhhcCCCCCCHHHhCCccceeeecCCcccCccCHHHHHHhCccccCCCcEEEecCCc---ccccCCCcEEEEE
Confidence 68999999999999999999986 79999999999999999999999999999999998741 1245677999999
Q ss_pred ecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChHHHHHH
Q 008310 97 LSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQA 176 (570)
Q Consensus 97 ~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~~~~~ 176 (570)
+||||||||||||+|+++++++.+++++||||++||+||+++++++|++++++.|+++|||++|||+|.++.++++++++
T Consensus 79 tsGGdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~e~~~~~ 158 (555)
T 2f48_A 79 LSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKA 158 (555)
T ss_dssp EBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHHHHH
T ss_pred CcCCCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCHHHHHHH
Confidence 99999999999999999999888899999999999999999999999999999999999966999999999899999999
Q ss_pred HHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHh
Q 008310 177 EETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDA 256 (570)
Q Consensus 177 ~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ni~~Da 256 (570)
+++|++++||+||+||||||+++|+.|+|++++++++++||||||||||||+++.+|+|||||||+++++++|++|++||
T Consensus 159 ~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~~~~~aId~i~~da 238 (555)
T 2f48_A 159 LFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDA 238 (555)
T ss_dssp HHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred hhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCc
Q 008310 257 RSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISEGLIDFI 336 (570)
Q Consensus 257 ~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli~EGl~~~i 336 (570)
.|++++|||||||||+||||||+||||++||+|||||++++++++|++++++||+.|++|+.+||+|+|||||||+++++
T Consensus 239 ~s~~~rv~iVEvMGR~aG~lAl~a~LA~gad~ilIPE~~~~~~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaEG~~~~~ 318 (555)
T 2f48_A 239 MSTKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIEFI 318 (555)
T ss_dssp HHHCCCEEEEEECCTTSCHHHHHHHHHHCCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTGGGTS
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHhhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCCcccc
Confidence 99998999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCc-------ccCCCc-hhhhcchhhHHHhhhchHHHHHHhh---hcCCCCCCcccchhhhHHHH
Q 008310 337 PEVQQLIAELNEILAHGG-------VDRDGV-WKKKLKSQSQELFELFPEEIQKQLL---LERDPHGNVQVAKIETERML 405 (570)
Q Consensus 337 pe~~~li~el~~~~~~~~-------~d~~g~-~~~~ls~~~~~lf~~lp~~i~~ql~---~~rD~~Gn~~ls~i~te~lL 405 (570)
|+++.|++|+|++++++. .+++|. +.++|++|++++|.+||..|++||+ .++|+|||+|+++|+||++|
T Consensus 319 ~~~~~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~~~~~~~lp~~i~~~l~~~~~~~D~~Gn~~l~~i~t~~~L 398 (555)
T 2f48_A 319 PEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLF 398 (555)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTSCHHHHH
T ss_pred chHHHHHHHHhhhhhcccccccccccccchhhhhhccchhhhhhhccchHHHHHHhhccccccCCCCCEeeccccHHHHH
Confidence 999999999999987642 122334 5578999999999999999999997 78999999999999999999
Q ss_pred HHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEe
Q 008310 406 IQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVG 485 (570)
Q Consensus 406 ~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~ 485 (570)
+++|+++|++++.++.|+++|++|+|+|||+||||.||+|||.||++||+.|++++++|.||+|++++|++.++++|++.
T Consensus 399 ~~~v~~~l~~~~~~~~~~~~~~~r~~~lGy~qRgg~PS~~Dr~la~~lG~~Av~~~~~G~tG~mv~i~~~~~~~~~w~~~ 478 (555)
T 2f48_A 399 IEMIQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAG 478 (555)
T ss_dssp HHHHHHHHHHHHTTTCCCSCCCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCGGGCEEE
T ss_pred HHHHHHHHHHHhcccCcccceeeeeccCCcchhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHhhhhhhhhcCCcccceeeceeccCChhhHHHHHhhccccccccccCCCcccccCCCC--CCCcceeeecccC
Q 008310 486 GTALTSLMHVERRHGKFKPVIKKAMVELEGKPFKTFASLREDWTIKNLYASPGPIQFSGPTA--NDINHTLMLELGQ 560 (570)
Q Consensus 486 ~vPl~~~~~~e~~~g~~~p~i~~~~V~l~~~~f~~~~~~r~~w~~~d~y~~pGpiq~~g~~~--~~~~~tl~~e~~~ 560 (570)
++||++|||+|+++|+.+|+|+|++|||+|++|+.|+++|++|+++|+||+||||||+||.+ |++++||.||+.+
T Consensus 479 ~vPl~~~~n~ek~~g~~~p~i~~~~Vdl~~~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~~~tl~~e~~~ 555 (555)
T 2f48_A 479 GVPLTMLMNMEERYGEKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEIVDEITETLKLELFK 555 (555)
T ss_dssp EEEGGGGEEEEEETTEEEEEECCCCCCTTSHHHHHHHHHHHHHHHSCCCCCCCCCCCSSCHHHHTCCCHHHHHHTC-
T ss_pred eeeHHHHhhhhhhcCccccceeeeeeCCCCHHHHHHHHHHHHhhhcCcccCCCCEeecCccccccCCCceeeccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999753
No 2
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=1.2e-82 Score=681.07 Aligned_cols=342 Identities=21% Similarity=0.279 Sum_probs=293.1
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcC-CCEEEEEeCCcccccCCCEEECChh---hhccccccCCceecccCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTK-GSKLYGFRGGPAGIMKCKFVELSSE---FIYPYRNQGGFDMLCSGRD 165 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~-~~~v~Gf~~G~~GLl~~~~~eLt~~---~v~~~~n~GG~~~lGs~R~ 165 (570)
.+||||++|||||||||+||+|+++.+..... ..+||||++||+||+++++++|+.. +++.++++||+ +|||+|+
T Consensus 3 ~kni~VltsGGdapGmNa~Ir~vv~~a~~~g~~~~~V~Gi~~G~~GLl~~~~~~l~~~~~~~v~~i~~~GGt-iLGSsR~ 81 (419)
T 3hno_A 3 AKNAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSG-AFGSCRY 81 (419)
T ss_dssp CCEEEEEECSSCCSSHHHHHHHHHHHHHHHCSSCCCEEEETTTHHHHHTTCEEEGGGSCHHHHHHGGGCCSC-TTCCCCC
T ss_pred CceEEEEccCCChHHHHHHHHHHHHHHHHcCCCCcEEEEEeCChHHhCCCCcccCccccHHHHHHHHcCCCc-eecCCCC
Confidence 47999999999999999999999999765432 2399999999999999999999654 89999999998 9999999
Q ss_pred CC----CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhH
Q 008310 166 KI----ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTA 241 (570)
Q Consensus 166 k~----~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA 241 (570)
++ .+++++++++++|++++||+||+||||||+++|++|+++++++|++++||||||||||||.++|. |||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~--t~GFdTA 159 (419)
T 3hno_A 82 KLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDC--CPGFGSV 159 (419)
T ss_dssp C------CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSS--CTTHHHH
T ss_pred CccccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCC--CCCchHH
Confidence 87 58899999999999999999999999999999999999999999999999999999999998885 9999999
Q ss_pred HHHHHHHHHHHHHHhhhcCC---eeEEEEecCCCCcHHHHHhhhh-----cCCcEEEECCchhhhhcchHHHHHHHHHHH
Q 008310 242 CKTFSEVIGNVMTDARSSGK---YYHFIRLMGRAASHITLECALQ-----THPNIAIIGEEIAAKKLTLKNVTDYITDII 313 (570)
Q Consensus 242 ~k~~se~I~ni~~Da~S~~k---~~~fIevMGR~ag~lAle~aLa-----t~pnivlIpEe~~~~~~tL~~iv~~i~d~I 313 (570)
++++++.|+++.+|++|+.+ +|||||||||+||||||+|||| ++||+|||||++++ + +.+++.|
T Consensus 160 ~~~~~~~i~~~~~d~~ss~~sh~rv~iVEvMGR~aG~lAl~aglA~~~~~~gad~ilIPE~~f~----~----~~~~~~i 231 (419)
T 3hno_A 160 AKYIAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFD----K----QKFLAKV 231 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCEEEEEECCSSCCHHHHGGGGGCCSSSCCCEEEECTTSCCC----H----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEcCCcChhHHHHHHHHhcccCCCCceEEEeCCCCCC----H----HHHHHHH
Confidence 99999999999999998776 7999999999999999999999 79999999999974 3 4556667
Q ss_pred HHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCC
Q 008310 314 CKRSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGN 393 (570)
Q Consensus 314 ~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn 393 (570)
++|.+. ++|+||+||||+.+. +|+++. ++ ..+|+|||
T Consensus 232 ~~~~~~-~~~~iIvVaEG~~~~----------------------~g~~i~------------------~~--~~~D~~G~ 268 (419)
T 3hno_A 232 DSCVKK-FGYCSVVVSEGVKGD----------------------DGKFLS------------------DQ--GVRDAFGH 268 (419)
T ss_dssp HHHHHH-HSCEEEEEETTCCCS----------------------SSCC--------------------------------
T ss_pred HHHHHh-CCCEEEEEeCCCccc----------------------CCcchh------------------cc--cccccccC
Confidence 777766 679999999999752 232221 11 25799999
Q ss_pred cccchhhhHHHHHHHHHHHHHHhhccCccccccccccccCcccccCCC--CCHHHHHHHHHHHHHHHHHHHcCCCceEEE
Q 008310 394 VQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGF--PTNFDANYCYALGFASGALLHAGKTGLIAS 471 (570)
Q Consensus 394 ~~ls~i~te~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~--PS~fD~~~a~~lG~~A~~li~~g~tG~m~~ 471 (570)
++++++ ++.|+++|++++. +++|.++|||.||||. ||+||+.||++||..|++++.+|.+|+|++
T Consensus 269 ~~l~gi--~~~la~~i~~~~g-----------~~~R~~~lGh~QRgg~p~ps~~Dr~la~~lG~~Av~~~~~G~~g~mv~ 335 (419)
T 3hno_A 269 AQLGGV--APVVASMVKEGLG-----------LKYHWGVADYLQRAARHIASKTDVEQAYAMGQAAVEFAVQGHNSVMPT 335 (419)
T ss_dssp ---CCS--HHHHHHHHHHHHC-----------CCEEEEECTHHHHSCGGGCBHHHHHHHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cccCcH--HHHHHHHHHHHhC-----------CceEEcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 999998 6778888877752 5788999999999998 899999999999999999999999999999
Q ss_pred EecCCCCccceEEeccchHhhhhhhhh
Q 008310 472 VGNLGEPVEEWTVGGTALTSLMHVERR 498 (570)
Q Consensus 472 i~~l~~~~~~w~~~~vPl~~~~~~e~~ 498 (570)
+++...++|+|++..+||.++++.++.
T Consensus 336 ~~~~~~~~y~~~~~~vpl~~~~~~~k~ 362 (419)
T 3hno_A 336 IERISARPYQWKVGMAQLSQVANVEKM 362 (419)
T ss_dssp EEEEEC-CCEEEEEEEEHHHHSSCCCC
T ss_pred EECCCCCccccEEEEeeHHHHhcccCC
Confidence 999999999999999999999987654
No 3
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=2.4e-79 Score=635.02 Aligned_cols=302 Identities=28% Similarity=0.429 Sum_probs=272.8
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCC-CC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDK-IE 168 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k-~~ 168 (570)
++||||++|||||||||++|+|+++++. +.+++||||++||+||+++++++|++++++.|+++||+ +|||+|.+ +.
T Consensus 1 ~k~i~IltsGGdapGmNaair~vv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGssR~~~~~ 77 (319)
T 1zxx_A 1 MKRIGILTSGGDAPGMNAAVRAVTRVAI--ANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGT-FLYSARYPEFA 77 (319)
T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHH--TTTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSC-TTCCCCCGGGT
T ss_pred CCEEEEEccCCCchhHHHHHHHHHHHHH--HCCCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCc-ccccCCCCccC
Confidence 3799999999999999999999999964 46889999999999999999999999999999999997 99999998 56
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEV 248 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~ 248 (570)
++|++++++++|++++||+||+||||||+++|+.|+|+ +++|||||||||||++++|+ |||||||+++++++
T Consensus 78 ~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~--t~GfdTA~~~~~~a 149 (319)
T 1zxx_A 78 EEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH------GFNSIGLPGTIDNDIPYTDA--TIGYDTACMTAMDA 149 (319)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSC--CEEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh------CCCEEEEeecccCCCCCCcC--CCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999986 58899999999999999875 99999999999999
Q ss_pred HHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEE
Q 008310 249 IGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLI 328 (570)
Q Consensus 249 I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli 328 (570)
|+++..+|.|+ ++|||||||||+||||||+||||++||+|||||+++ ++ +.+++.|++|+++||+|+||+|
T Consensus 150 id~i~~ta~s~-~rv~iVEvMGR~aG~lAl~a~lA~ga~~iliPE~~~----~~----~~i~~~i~~~~~~gk~~~iIvv 220 (319)
T 1zxx_A 150 IDKIRDTASSH-HRVFIVNVMGRNCGDIAMRVGVACGADAIVIPERPY----DV----EEIANRLKQAQESGKDHGLVVV 220 (319)
T ss_dssp HHHHHHHHHHT-TCEEEEEECCTTCCHHHHHHHHHTTCSEEECTTSCC----CH----HHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHhcC-CCEEEEEeCCCCHHHHHHHHHHhcCCCEEEeCCCCC----CH----HHHHHHHHHHHHcCCCcEEEEE
Confidence 99997777776 579999999999999999999999999999999986 43 5667788899989999999999
Q ss_pred eCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHH
Q 008310 329 SEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQM 408 (570)
Q Consensus 329 ~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~l 408 (570)
+||+.+ .+.|++.
T Consensus 221 aEG~~~-------------------------------------------------------------------~~~l~~~ 233 (319)
T 1zxx_A 221 AEGVMT-------------------------------------------------------------------ADQFMAE 233 (319)
T ss_dssp ETTTCC-------------------------------------------------------------------HHHHHHH
T ss_pred eCCcCh-------------------------------------------------------------------HHHHHHH
Confidence 999732 0123333
Q ss_pred HHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccc
Q 008310 409 VEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTA 488 (570)
Q Consensus 409 V~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~~vP 488 (570)
+++ + ..|++|+++|||.||||.||+|||.||++||..|++++.+|.+|+|++++|. ++..+|
T Consensus 234 i~~----~-------~~~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~mv~~~~~-------~~~~~p 295 (319)
T 1zxx_A 234 LKK----Y-------GDFDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEGKGGLAVGIENG-------KVTSHD 295 (319)
T ss_dssp HHH----S-------SCCCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEETT-------EEEEEE
T ss_pred HHH----h-------hCceEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECC-------EEEEEE
Confidence 333 2 2578999999999999999999999999999999999999999999999986 488999
Q ss_pred hHhhhhhh
Q 008310 489 LTSLMHVE 496 (570)
Q Consensus 489 l~~~~~~e 496 (570)
|.++++.+
T Consensus 296 l~~~~~~~ 303 (319)
T 1zxx_A 296 ILDLFDES 303 (319)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhcC
Confidence 99988754
No 4
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=5.1e-79 Score=660.03 Aligned_cols=352 Identities=24% Similarity=0.314 Sum_probs=304.9
Q ss_pred CCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccC---CCEEECChhhhccccccCCceecccC
Q 008310 87 ENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMK---CKFVELSSEFIYPYRNQGGFDMLCSG 163 (570)
Q Consensus 87 ~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~---~~~~eLt~~~v~~~~n~GG~~~lGs~ 163 (570)
....+||||++|||||||||+||+|+++++...+...+||||++||+||++ +++++|+|++++.|+++||+ +|||+
T Consensus 94 ~~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGT-iLGTs 172 (487)
T 2hig_A 94 NPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGT-ILGSS 172 (487)
T ss_dssp CGGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSC-SSCCC
T ss_pred cCCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCC-eeccC
Confidence 345689999999999999999999999998654554599999999999975 69999999999999999997 99999
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHH
Q 008310 164 RDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACK 243 (570)
Q Consensus 164 R~k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k 243 (570)
|.+.. .++++++|++++||+||+||||||+++|+.|++++.++|++++||||||||||||+++|. |||||||++
T Consensus 173 R~~~~----~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~--T~GFdTAv~ 246 (487)
T 2hig_A 173 RGPQD----PKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHR--TFGFQTAVE 246 (487)
T ss_dssp CSCCC----HHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSC--CTTHHHHHH
T ss_pred CCCCC----HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCC--CCCHHHHHH
Confidence 99862 459999999999999999999999999999999999999999999999999999998875 999999999
Q ss_pred HHHHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcC-CcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCC
Q 008310 244 TFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTH-PNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYN 322 (570)
Q Consensus 244 ~~se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~-pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~ 322 (570)
+++++|++|+.||.|++++|||||||||+||||||+||||++ ||+|||||+++ +|+ .+++.|++|.+ +++
T Consensus 247 ~~~eaId~i~~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p~----~l~----~i~~~i~~r~~-~k~ 317 (487)
T 2hig_A 247 KAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPI----SEQ----EVMSLLERRFC-HSR 317 (487)
T ss_dssp HHHHHHHHHHHHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEEECTTSCC----CHH----HHHHHHHHHTT-SCS
T ss_pred HHHHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCCC----CHH----HHHHHHHHHHh-cCC
Confidence 999999999999999988899999999999999999999999 99999999986 444 56667778865 799
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhH
Q 008310 323 FGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETE 402 (570)
Q Consensus 323 ~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te 402 (570)
|+||+|+||+...+. .. ...+|++||++++.+ .
T Consensus 318 ~~IIvVaEGag~~~~------------------------------------~~---------~~~~Da~G~~~l~~i--~ 350 (487)
T 2hig_A 318 SCVIIVAEGFGQDWG------------------------------------RG---------SGGYDASGNKKLIDI--G 350 (487)
T ss_dssp EEEEEEETTTTGGGC------------------------------------CC-----------CBCTTSCBCCCCH--H
T ss_pred cEEEEEeCCCccccc------------------------------------cc---------ccccccccCcchhHH--H
Confidence 999999999842100 00 125799999999987 6
Q ss_pred HHHHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccce
Q 008310 403 RMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEW 482 (570)
Q Consensus 403 ~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w 482 (570)
++|+++|+++++++..+. .+|++++..+||.||||.||+||+.||++||..|++++++|.||+|+++++.
T Consensus 351 ~~l~~~i~~~~~~~g~~~---~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~AV~~l~~G~tg~mVgi~~~------- 420 (487)
T 2hig_A 351 VILTEKVKAFLKANKSRY---PDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHN------- 420 (487)
T ss_dssp HHHHHHHHHHHHTTTTTS---SSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTEESEEEEEETT-------
T ss_pred HHHHHHHHHHHhhcCccc---cccceEEccCCcCccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECC-------
Confidence 788888888876543211 1467889999999999999999999999999999999999999999999986
Q ss_pred EEeccchHhhhhhhhhcCCcccceeeceeccCChhhHHHHH
Q 008310 483 TVGGTALTSLMHVERRHGKFKPVIKKAMVELEGKPFKTFAS 523 (570)
Q Consensus 483 ~~~~vPl~~~~~~e~~~g~~~p~i~~~~V~l~~~~f~~~~~ 523 (570)
++..+||.++++. ...|+.++..++....
T Consensus 421 ~i~~vPl~ev~~~------------~k~v~~~~~~w~~~~~ 449 (487)
T 2hig_A 421 NYILVPIKVATSV------------RRVLDLRGQLWRQVRE 449 (487)
T ss_dssp EEEEEEHHHHTTE------------EEEECTTSHHHHHHHH
T ss_pred EEEEEEHHHHHcc------------CCCcCcchHHHHHHHH
Confidence 5889999999863 2345556665555443
No 5
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=3e-79 Score=634.44 Aligned_cols=300 Identities=29% Similarity=0.361 Sum_probs=272.9
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCC-CC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDK-IE 168 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k-~~ 168 (570)
++||||++|||||||||++|+|+++++. +.+++||||++||+||+++++++|++++++.|+++||+ +|||+|.+ +.
T Consensus 2 ~k~i~IltsGGdapGmNaair~vv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGssR~~~~~ 78 (320)
T 1pfk_A 2 IKKIGVLTSGGDAPGMNAAIRGVVRSAL--TEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGT-FLGSARFPEFR 78 (320)
T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHH--HTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSC-TTCCCCCGGGG
T ss_pred CCEEEEEccCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCC-eeccCCCCCCC
Confidence 4799999999999999999999999964 46789999999999999999999999999999999997 99999998 56
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEV 248 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~ 248 (570)
++|++++++++|++++||+||+||||||+++|+.|+|+ +++||||||||||||+++|+ |||||||+++++++
T Consensus 79 ~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~--t~GfdTA~~~~~~a 150 (320)
T 1pfk_A 79 DENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTDY--TIGFFTALSTVVEA 150 (320)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCSC--CBTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCcC--CCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999985 68899999999999999875 99999999999999
Q ss_pred HHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEE
Q 008310 249 IGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLI 328 (570)
Q Consensus 249 I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli 328 (570)
|+++..+|.|++ +|||||||||+||||||+||||++||+|||||+++ ++ +.+++.|++|+++||+|+||+|
T Consensus 151 id~i~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~ga~~iliPE~~~----~~----~~i~~~i~~~~~~gk~~~iIvv 221 (320)
T 1pfk_A 151 IDRLRDTSSSHQ-RISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEVEF----SR----EDLVNEIKAGIAKGKKHAIVAI 221 (320)
T ss_dssp HHHHHHHHHHHT-CEEEEEECCTTCCHHHHHHHHHTTCSEEECTTSCC----CH----HHHHHHHHHHHHTTCSCEEEEE
T ss_pred HHHHHHHHhcCC-CEEEEEeCCcCHHHHHHHHHHhcCCCEEEeCCCCC----CH----HHHHHHHHHHHHcCCCcEEEEE
Confidence 999988888875 79999999999999999999999999999999986 43 5667788889989999999999
Q ss_pred eCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHH
Q 008310 329 SEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQM 408 (570)
Q Consensus 329 ~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~l 408 (570)
+||+.. .+.|++.
T Consensus 222 aEG~~~-------------------------------------------------------------------~~~la~~ 234 (320)
T 1pfk_A 222 TEHMCD-------------------------------------------------------------------VDELAHF 234 (320)
T ss_dssp ESSSSC-------------------------------------------------------------------HHHHHHH
T ss_pred eCCcch-------------------------------------------------------------------HHHHHHH
Confidence 999731 1123444
Q ss_pred HHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccc
Q 008310 409 VEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTA 488 (570)
Q Consensus 409 V~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~~vP 488 (570)
+++++ .|++|+++|||.||||.||+||+.||++||..|++++.+|.+|+|+++++. ++..+|
T Consensus 235 i~~~~-----------~~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~mv~~~~~-------~~~~~p 296 (320)
T 1pfk_A 235 IEKET-----------GRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNE-------QLVHHD 296 (320)
T ss_dssp HHHHH-----------SSCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHHTCCSEEEEEETT-------EEEEEE
T ss_pred HHHHh-----------CCeEEEEcCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECC-------EEEEEE
Confidence 44432 478899999999999999999999999999999999999999999999986 488999
Q ss_pred hHhhh-h
Q 008310 489 LTSLM-H 494 (570)
Q Consensus 489 l~~~~-~ 494 (570)
|.+++ +
T Consensus 297 l~~~~~~ 303 (320)
T 1pfk_A 297 IIDAIEN 303 (320)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 99998 5
No 6
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=3.4e-76 Score=612.64 Aligned_cols=302 Identities=27% Similarity=0.371 Sum_probs=270.1
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCC-CC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDK-IE 168 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k-~~ 168 (570)
++|||||||||||||||+||+|+++++ .+.+.+||||++||+||+++++++|+++.++.++++||+ +|||+|.+ +.
T Consensus 1 mkrIgIltsGG~~pG~Na~ir~vv~~a--~~~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt-~lgtsR~~~~~ 77 (319)
T 4a3s_A 1 MKRIGVLTSGGDSPGMNAAVRAVVRKA--IYHDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGT-KLYTARCPEFK 77 (319)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHH--HHTTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSC-TTCCCCCHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHHHHHH--HHCCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCC-ccccCCCCccc
Confidence 479999999999999999999999985 457889999999999999999999999999999999998 99999985 56
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEV 248 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~ 248 (570)
++|++++++++|++++||+||+||||||+++|++|+|+ .++||||||||||||+++|. |||||||+++++++
T Consensus 78 ~~e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~------~i~vigiPkTIDNDl~~td~--t~GfdTA~~~~~~a 149 (319)
T 4a3s_A 78 TVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDIPGTDF--TIGFDTALNTVIDA 149 (319)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSC--CEEHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc------CCcEEEeeccccCCCCCCCC--CCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999986 57899999999999998885 99999999999999
Q ss_pred HHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEE
Q 008310 249 IGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLI 328 (570)
Q Consensus 249 I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli 328 (570)
|+++..+|.|++ +|||||||||+|||||+++|||++||+|||||++++ + +.+++.|+++.++|++|++|+|
T Consensus 150 i~~i~~~a~s~~-rv~ivEvMGR~aG~lA~~a~la~ga~~iliPE~~~~----~----~~~~~~i~~~~~~g~~~~iivv 220 (319)
T 4a3s_A 150 IDKIRDTATSHE-RTYVIEVMGRHAGDIALWAGLAGGAESILIPEADYD----M----HEIIARLKRGHERGKKHSIIIV 220 (319)
T ss_dssp HHHHHHHHHHHT-CEEEEEECCTTCCHHHHHHHHHHTCSEEEBTTBCCC----H----HHHHHHHHHHHTTTCCCEEEEE
T ss_pred HHHHHhhhhccC-CeEEEEeCCcchhHHHHHHHhccCCCEEEecCCCCC----H----HHHHHHHHHHHHcCCCceEEEE
Confidence 999988887775 589999999999999999999999999999999873 3 4556677888889999999999
Q ss_pred eCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHHHHH
Q 008310 329 SEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQM 408 (570)
Q Consensus 329 ~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~~l 408 (570)
+||+... ..+++.
T Consensus 221 aEG~~~~-------------------------------------------------------------------~~~~~~ 233 (319)
T 4a3s_A 221 AEGVGSG-------------------------------------------------------------------VEFGKR 233 (319)
T ss_dssp ETTTCCH-------------------------------------------------------------------HHHHHH
T ss_pred ECCCCcc-------------------------------------------------------------------hHHHHH
Confidence 9998531 011222
Q ss_pred HHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCCCccceEEeccc
Q 008310 409 VEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTA 488 (570)
Q Consensus 409 V~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~tG~m~~i~~l~~~~~~w~~~~vP 488 (570)
+++++ .+++|...+||.||||.||+||+.+|++||..|++++++|.||+|++++|. ++..+|
T Consensus 234 ~~~~~-----------g~~~r~~~lGh~qRgg~psa~Dr~~a~~lG~~AV~~~~~G~~g~mv~~~~~-------~~~~~p 295 (319)
T 4a3s_A 234 IEEET-----------NLETRVSVLGHIQRGGSPSAADRVLASRLGAYAVELLLEGKGGRCVGIQNN-------KLVDHD 295 (319)
T ss_dssp HHHHH-----------CCCEEEEECGGGGGCSSCCHHHHHHHHHHHHHHHHHHTTTCCSEEEEEETT-------EEEEEE
T ss_pred HHHhC-----------CceEEEcchhHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECC-------EEEEEe
Confidence 33332 367788999999999999999999999999999999999999999999986 478899
Q ss_pred hHhhhhhh
Q 008310 489 LTSLMHVE 496 (570)
Q Consensus 489 l~~~~~~e 496 (570)
|.++++.+
T Consensus 296 l~~~~~~~ 303 (319)
T 4a3s_A 296 IIEILETK 303 (319)
T ss_dssp HHHHSSSC
T ss_pred HHHHHhcc
Confidence 99988754
No 7
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=4.6e-72 Score=632.76 Aligned_cols=343 Identities=22% Similarity=0.309 Sum_probs=296.5
Q ss_pred CCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCC--CEEECChhhhccccccCCceecccCC
Q 008310 87 ENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKC--KFVELSSEFIYPYRNQGGFDMLCSGR 164 (570)
Q Consensus 87 ~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~lGs~R 164 (570)
..+++||||++|||||||||+||+++++.. .+.+.+||||++||+||+++ ++++|++++++.|+++||+ +|||+|
T Consensus 12 ~~~~krIaIltsGGdaPGmNaaIravvr~a--~~~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGT-iLGSsR 88 (762)
T 3o8l_A 12 LGVGKAIAVLTSGGDAQGMNAAVRAVVRVG--IFTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGT-VIGSAR 88 (762)
T ss_dssp TTSSCEEEEECCSSCCTTHHHHHHHHHHHH--HHTTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSC-SSCCCC
T ss_pred cccCcEEEEEccCCCchhHhHHHHHHHHHH--HHCCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCc-cccCCC
Confidence 455789999999999999999999999874 45689999999999999999 8999999999999999997 999999
Q ss_pred CC-CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH-----------------HhcCCCCceEEEeeccccCC
Q 008310 165 DK-IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAEN-----------------FRSKDMKTRVIGCPKTIDGD 226 (570)
Q Consensus 165 ~k-~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~-----------------~~~~g~~i~VIgVPKTIDND 226 (570)
.+ +.+++++++++++|++++||+||+||||||+++|+.|+++ +++++.+++|||||||||||
T Consensus 89 ~~~f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDND 168 (762)
T 3o8l_A 89 CKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDND 168 (762)
T ss_dssp CCGGGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCC
T ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccC
Confidence 98 5788999999999999999999999999999999988654 34566789999999999999
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHH
Q 008310 227 LKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVT 306 (570)
Q Consensus 227 L~~~~ie~s~GFdTA~k~~se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv 306 (570)
++++|. |||||||+++++++|++|..+|.|++| +||||||||+||||||++|||++||+|||||++++. +++
T Consensus 169 l~gTD~--TiGfdTA~~~i~eaid~i~~tA~Sh~R-v~iVEvMGR~aG~LAl~aglA~gad~ilIPE~p~~~-----~~~ 240 (762)
T 3o8l_A 169 FCGTDM--TIGTDSALHRITEIVDAITTTAQSHQR-TFVLEVMGRHCGYLALVTSLSCGADWVFIPECPPDD-----NWE 240 (762)
T ss_dssp CSSCSC--CBTHHHHHHHHHHHHHHHHTTCCSSCC-EEEEEECCSSCCHHHHHHHHHHTCSBCCCTTSCCCS-----SCH
T ss_pred CCCCcC--CcCchhHHHHHHHHHHHHHHhhhcCcc-EEEEEeCCcchhHHHHHHHHhcCCCEEEecCCCCCc-----chH
Confidence 999885 999999999999999999999998865 799999999999999999999999999999999853 346
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhh
Q 008310 307 DYITDIICKRSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLL 386 (570)
Q Consensus 307 ~~i~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~ 386 (570)
+++++.|++|+++|++|+||+|+||+.+
T Consensus 241 ~~~~~~i~~~~~~gk~~~iVvVaEGa~d---------------------------------------------------- 268 (762)
T 3o8l_A 241 DHLCRRLSETRTRGSRLNIIIVAEGAID---------------------------------------------------- 268 (762)
T ss_dssp HHHHHHHHHHHHTTCSCCBBCEETTCCC----------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCCceEEEEeCCccC----------------------------------------------------
Confidence 8899999999999999999999999853
Q ss_pred cCCCCCCcccchhhhHHHHHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC-
Q 008310 387 ERDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGK- 465 (570)
Q Consensus 387 ~rD~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~- 465 (570)
.+|++.. .+.|+++|++++ .+++|...+||.||||.||+||+.||+.||..|++++.+|.
T Consensus 269 ---~~G~~i~-----~~~l~~~i~~~~-----------g~~~R~tvLGh~QRgg~Psa~Dr~lat~lG~~AV~~~~~g~~ 329 (762)
T 3o8l_A 269 ---RNGKPIT-----SEGVKDLVVRRL-----------GYDTRVTVLGHVQRGGTPSAFDRILGSRMGVEAVMALLEGTP 329 (762)
T ss_dssp ---SSSCCCC-----HHHHHHHHHHHT-----------CCCEEEECCCSSTTCSCCCHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred ---CCCCCcH-----HHHHHHHHHHHh-----------CCCcceeecCccccCCCCChHHHHHHHHHHHHHHHHHHcCCC
Confidence 2343322 234555555443 47889999999999999999999999999999999999999
Q ss_pred --CceEEEEecCCCCccceEEeccchHhhhhhhhhcCC---cccceeeceeccCChhhHH
Q 008310 466 --TGLIASVGNLGEPVEEWTVGGTALTSLMHVERRHGK---FKPVIKKAMVELEGKPFKT 520 (570)
Q Consensus 466 --tG~m~~i~~l~~~~~~w~~~~vPl~~~~~~e~~~g~---~~p~i~~~~V~l~~~~f~~ 520 (570)
+|+|+++++. ++..+||.++++.++...+ .+.| ...+.+.|.+|..
T Consensus 330 ~~~~~~v~~~~~-------~i~~~Pl~e~~~~~k~v~~~~~~~~~--~~a~~~rg~~f~~ 380 (762)
T 3o8l_A 330 DTPACVVSLSGN-------QAVRLPLMECVQVTKDVTKAMDEKRF--DEAMKLRGRSFMN 380 (762)
T ss_dssp TSCCEEEEEETT-------EEEEEEHHHHHHHHHHHHHHHHSSCH--HHHHHHHCTHHHH
T ss_pred CCceEEEEEECC-------EEEEEEHHHHHhccCCCChhhccchH--HHHHHhhCchHHH
Confidence 8999999987 4889999999987665432 2333 2233556666663
No 8
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-71 Score=624.12 Aligned_cols=342 Identities=21% Similarity=0.284 Sum_probs=293.8
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCC---EEECChhhhccccccCCceecccCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCK---FVELSSEFIYPYRNQGGFDMLCSGRDK 166 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~---~~eLt~~~v~~~~n~GG~~~lGs~R~k 166 (570)
.+||||++|||||||||+||+++++++. +.+.+||||++||+||++++ +.+|+|++++.|+++||+ +|||+|.+
T Consensus 3 ~krIgIltsGGdapGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGT-iLGTsR~~ 79 (766)
T 3o8o_B 3 QKAIAVMTSGGDAPGMNSNVRAIVRSAI--FKGCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGT-NIGTARCM 79 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHH--HHTCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSC-TTCCCCCS
T ss_pred CcEEEEEeeCCCchhHHHHHHHHHHHHH--HCCCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCc-eeccCCCC
Confidence 4799999999999999999999999864 45789999999999999986 789999999999999998 99999998
Q ss_pred -CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHH-----------------hcCCCCceEEEeeccccCCCC
Q 008310 167 -IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENF-----------------RSKDMKTRVIGCPKTIDGDLK 228 (570)
Q Consensus 167 -~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~-----------------~~~g~~i~VIgVPKTIDNDL~ 228 (570)
+.+++.+.+++++|++++||+||+||||||+++|.+|+++| .+++.+++|||||||||||++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~ 159 (766)
T 3o8o_B 80 EFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMS 159 (766)
T ss_dssp GGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCT
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCC
Confidence 45678899999999999999999999999999999987643 234567999999999999999
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHH
Q 008310 229 CKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDY 308 (570)
Q Consensus 229 ~~~ie~s~GFdTA~k~~se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~ 308 (570)
++|. |||||||+++++++|++|..+|.|+++ +||||||||+||||||++|||++||+|||||+++ +++++.++
T Consensus 160 gTD~--TiGfdTA~~~i~eaid~i~~tA~Sh~R-vfvVEvMGR~aG~LAl~aglA~gAd~ilIPE~p~----~~~~~~~~ 232 (766)
T 3o8o_B 160 TTDA--TIGAYSALDRICKAIDYVEATANSHSR-AFVVEVMGRNCGWLALLAGIATSADYIFIPEKPA----TSSEWQDQ 232 (766)
T ss_dssp TCSC--CBTHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECCTTCCHHHHHHHHHHTCSEEECTTCCC----CTTHHHHH
T ss_pred CCCC--CCChhHHHHHHHHHHHHHHhhhhccCc-eEEEEcCCcchhHHHHHHHHhcCCCEEEccCCCC----ChHHHHHH
Confidence 9885 999999999999999999999998865 7999999999999999999999999999999986 67778899
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcC
Q 008310 309 ITDIICKRSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLER 388 (570)
Q Consensus 309 i~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~r 388 (570)
|++.+++|...||+|+||+|+||+.+. +
T Consensus 233 v~~~i~~~~~~gk~~~IVvVaEGa~~~----------------------~------------------------------ 260 (766)
T 3o8o_B 233 MCDIVSKHRSRGKRTTIVVVAEGAIAA----------------------D------------------------------ 260 (766)
T ss_dssp HHHHHHHHHHTTCCCEEEEEETTCBCT----------------------T------------------------------
T ss_pred HHHHHHHHHhcCCCceEEEEeCCcccc----------------------c------------------------------
Confidence 999999999999999999999998641 1
Q ss_pred CCCCCcccchhhhHHHHHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC--
Q 008310 389 DPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKT-- 466 (570)
Q Consensus 389 D~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~t-- 466 (570)
|+. + +.+.+++. ++++ ..+++|...|||.||||.||+||+.+|+.||..|++++.+|.+
T Consensus 261 ---~~~----~-~~~~l~~~----i~~~-------~g~~~R~tvLGh~QRGG~Psa~DR~lAt~~G~~AV~~~~~g~~~~ 321 (766)
T 3o8o_B 261 ---LTP----I-SPSDVHKV----LVDR-------LGLDTRITTLGHVQRGGTAVAYDRILATLQGLEAVNAVLESTPDT 321 (766)
T ss_dssp ---SCB----C-CHHHHHHH----HHHT-------TCCCEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred ---CCc----c-hHHHHHHH----HHHH-------hCCceeEcccChhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 111 0 12233443 4333 2488999999999999999999999999999999999999997
Q ss_pred -ceEEEEecCCCCccceEEeccchHhhhhhhhhcCC---cccceeeceeccCChhhHHH
Q 008310 467 -GLIASVGNLGEPVEEWTVGGTALTSLMHVERRHGK---FKPVIKKAMVELEGKPFKTF 521 (570)
Q Consensus 467 -G~m~~i~~l~~~~~~w~~~~vPl~~~~~~e~~~g~---~~p~i~~~~V~l~~~~f~~~ 521 (570)
|+|+++++.+ +..+||.+.+...+...+ .|.| ..-++|.|..|...
T Consensus 322 ~~~mv~~~~~~-------i~~~pl~~~~~~~k~v~~~~~~~~~--~~a~~lr~~~f~~~ 371 (766)
T 3o8o_B 322 PSPLIAVNENK-------IVRKPLMESVKLTKAVAEAIQAKDF--KRAMSLRDTEFIEH 371 (766)
T ss_dssp CCEEEEESSSC-------EEEEEHHHHHHHHHHHHHHHHTTCH--HHHHHHSCTTHHHH
T ss_pred CceEEEEECCE-------EEEEEHHHHHhccCccHHHHhcCCH--HHHHHccCHHHHHH
Confidence 8999999875 789999998876554322 1222 23347888777654
No 9
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=5.1e-71 Score=624.22 Aligned_cols=328 Identities=22% Similarity=0.299 Sum_probs=290.2
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
.+++||||++|||||||||+||+++++++. +.+.+||||++||+||+++++++|++++++.|.++||+ +|||+|.++
T Consensus 398 ~~~~~IgIltsGGdapGmNaaIravv~~~~--~~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt-~LGTsR~~~ 474 (762)
T 3o8l_A 398 SGSYTVAVMNVGAPAAGMNAAVRSTVRIGL--IQGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGS-KLGSKRTLP 474 (762)
T ss_dssp SSCCEEEEEEESSCCTTHHHHHHHHHHHHH--HHTCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSC-SSCEECCCS
T ss_pred ccCCEEEEEecCCCcHHHHHHHHHHHHHHH--HCCCEEEEEeccccccccCCEEECCHHHhhhHHhCCCc-eeecCCCCc
Confidence 456899999999999999999999999865 34789999999999999999999999999999999998 999999876
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCC-CCceEEEeeccccCCCCCCCCCCCCChhhHHHHHH
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKD-MKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFS 246 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g-~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~s 246 (570)
++++++++++|++++||+||+||||||+++|..|++++.+.. .+++||||||||||||+++|+ |||||||+++++
T Consensus 475 --~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~--TiGfdTA~~~~~ 550 (762)
T 3o8l_A 475 --KKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDF--SVGADTALNTIC 550 (762)
T ss_dssp --GGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSC--CBTHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcC--CCChHHHHHHHH
Confidence 578999999999999999999999999999999999987654 579999999999999999885 999999999999
Q ss_pred HHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHHcCCCeEEE
Q 008310 247 EVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVV 326 (570)
Q Consensus 247 e~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvI 326 (570)
++|++|..+|.|++++|||||||||+||||||++|||++||+|||||+++ +++++.+.++. +.+|.+.|++|++|
T Consensus 551 ~aid~i~~tA~ssh~rv~vVEvMGR~aG~lAl~aglA~gad~ilIPE~~~----~l~~~~~~i~~-~~~r~~~~~~~~iV 625 (762)
T 3o8l_A 551 TTCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAAGADAAYIFEEPF----TIRDLQANVEH-LVQKMKTTVKRGLV 625 (762)
T ss_dssp HHHHHHTTTTCSSSCEEEEEEECSTTCCHHHHHHHHHTTCSEEECSSSCC----CHHHHHHHHHH-HHHHHTSSCSEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhHHHHHHHHhhCCCEEEECCCCC----CHHHHHHHHHH-HHHHHhcCCCceEE
Confidence 99999999998777889999999999999999999999999999999986 78888887766 67888899999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhhHHHHH
Q 008310 327 LISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLI 406 (570)
Q Consensus 327 li~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~te~lL~ 406 (570)
||+||+.... +.++++
T Consensus 626 vvaEga~~~~----------------------------------------------------------------~~~~~~ 641 (762)
T 3o8l_A 626 LRNEKCNENY----------------------------------------------------------------TTDFIF 641 (762)
T ss_dssp EEETTSCSSS----------------------------------------------------------------CHHHHH
T ss_pred EEECCCCccc----------------------------------------------------------------hHHHHH
Confidence 9999975310 012233
Q ss_pred HHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcC---------------CCceEEE
Q 008310 407 QMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAG---------------KTGLIAS 471 (570)
Q Consensus 407 ~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g---------------~tG~m~~ 471 (570)
++++++ . +..|++|...|||.||||.||+|||.+|.+||..|++++.+| .+|+|++
T Consensus 642 ~~~~~~----~-----~~~~d~R~tvLGH~QRGG~Pta~DRilatr~g~~Av~~l~~g~~~~~~~g~~~~~~~~~~~~vg 712 (762)
T 3o8l_A 642 NLYSEE----G-----KGIFDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWMAGKIKESYRNGRIFANTPDSGCVLG 712 (762)
T ss_dssp HHHHHH----T-----TTTCEEEEEECCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHTTBCSSSBCCCSSTTEEEEE
T ss_pred HHHHhh----c-----cCCceEEEeeCchhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccccccccccccccCCceEEEE
Confidence 333332 1 135899999999999999999999999999999999999987 7999999
Q ss_pred EecCCCCccceEEeccchHhhhh---hhhhcCCccccee
Q 008310 472 VGNLGEPVEEWTVGGTALTSLMH---VERRHGKFKPVIK 507 (570)
Q Consensus 472 i~~l~~~~~~w~~~~vPl~~~~~---~e~~~g~~~p~i~ 507 (570)
+++.+ +..+||.++.. ++.|.++..+|.+
T Consensus 713 ~~~~~-------i~~~pl~e~~~~~d~~~r~~~~~~w~~ 744 (762)
T 3o8l_A 713 MRKRA-------LVFQPVTELQNQTDFEHRIPKEQWWLK 744 (762)
T ss_dssp EETTE-------EEEEEHHHHGGGEETTTTEESSCGGGG
T ss_pred EECCE-------EEEEEHHHHhhccchhhcCCCCchHHh
Confidence 99974 78999999865 5566788877763
No 10
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-71 Score=622.14 Aligned_cols=342 Identities=19% Similarity=0.272 Sum_probs=293.0
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCC--CEEECChhhhccccccCCceecccCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKC--KFVELSSEFIYPYRNQGGFDMLCSGRDK 166 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~lGs~R~k 166 (570)
+++||||++|||||||||+||+++++++. +.+.+||||++||+||+++ ++.+|+|++++.|+++||+ +|||+|.+
T Consensus 4 ~~krIgIltsGGdaPGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGT-iLGTsR~~ 80 (787)
T 3o8o_A 4 KKKKIAVMTSGGDSPGMNAAVRAVVRTGI--HFGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGT-LIGTARSM 80 (787)
T ss_dssp -CCEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSC-TTCCCCCS
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCc-eeccCCCC
Confidence 45899999999999999999999999864 5688999999999999998 7999999999999999998 99999998
Q ss_pred -CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHH-----------------hcCCCCceEEEeeccccCCCC
Q 008310 167 -IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENF-----------------RSKDMKTRVIGCPKTIDGDLK 228 (570)
Q Consensus 167 -~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~-----------------~~~g~~i~VIgVPKTIDNDL~ 228 (570)
+.+++.+.+++++|++++||+||+||||||+++|..|+++| .+++.+++||||||||||||+
T Consensus 81 ~f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~ 160 (787)
T 3o8o_A 81 EFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMS 160 (787)
T ss_dssp GGGSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCT
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCC
Confidence 46788999999999999999999999999999999887532 334568999999999999999
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHH
Q 008310 229 CKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDY 308 (570)
Q Consensus 229 ~~~ie~s~GFdTA~k~~se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~ 308 (570)
++|. |||||||+++++++|++|..+|.|+++ |||||||||+||||||++|||++||+|||||+++ +++++.++
T Consensus 161 gTD~--TiGfdTAl~~i~eaid~i~~tA~Sh~R-vfvVEVMGR~aG~LAl~agLA~gAd~ilIPE~p~----~~~~~~~~ 233 (787)
T 3o8o_A 161 GTDS--TIGAYSALERICEMVDYIDATAKSHSR-AFVVEVMGRHCGWLALMAGIATGADYIFIPERAV----PHGKWQDE 233 (787)
T ss_dssp TSSC--CEEHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECCTTCCHHHHHHHHHTTCSEEECGGGCB----CTTTHHHH
T ss_pred CCCC--CCCcHHHHHHHHHHHHHHHhhhhccCc-eEEEEcCCcchhHHHHHHHHhhCCCEEEeCCCCC----ChHHHHHH
Confidence 9885 999999999999999999999998754 8999999999999999999999999999999986 66677889
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcC
Q 008310 309 ITDIICKRSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLER 388 (570)
Q Consensus 309 i~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~r 388 (570)
|++.+++|...||+|+||+|+||+.+. ++
T Consensus 234 v~~~i~~~~~~gk~~~IVvVaEGa~~~----------------------~~----------------------------- 262 (787)
T 3o8o_A 234 LKEVCQRHRSKGRRNNTIIVAEGALDD----------------------QL----------------------------- 262 (787)
T ss_dssp HHHHHHHHHHTTCCCEEEEEETTCBBT----------------------TS-----------------------------
T ss_pred HHHHHHHHHhcCCCceEEEEeCCCccc----------------------cC-----------------------------
Confidence 999999999999999999999998641 11
Q ss_pred CCCCCcccchhhhHHHHHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC--
Q 008310 389 DPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKT-- 466 (570)
Q Consensus 389 D~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~t-- 466 (570)
+. + +...+++++++ + .|++|...+||.||||.||+|||.+|+.||..|++++++|.+
T Consensus 263 ----~~----~-~~~~~~~~i~~-~-----------g~~~R~tvLGh~QRGG~Psa~DRilAtrlG~~AV~~l~~g~~~~ 321 (787)
T 3o8o_A 263 ----NP----V-TANDVKDALIE-L-----------GLDTKVTILGHVQRGGTAVAHDRWLATLQGVDAVKAVLEFTPET 321 (787)
T ss_dssp ----CB----C-CHHHHHHHHHH-H-----------TCCEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHTCCSSC
T ss_pred ----cc----h-hHHHHHHHHHH-h-----------CCcceeeccCHhhcCCCCChHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 10 0 01223333333 2 378899999999999999999999999999999999999997
Q ss_pred -ceEEEEecCCCCccceEEeccchHhhhhhhhhcCC---cccceeeceeccCChhhHHH
Q 008310 467 -GLIASVGNLGEPVEEWTVGGTALTSLMHVERRHGK---FKPVIKKAMVELEGKPFKTF 521 (570)
Q Consensus 467 -G~m~~i~~l~~~~~~w~~~~vPl~~~~~~e~~~g~---~~p~i~~~~V~l~~~~f~~~ 521 (570)
|+|+++++.+ +..+||.+.+...+...+ .|-| ..-++|.|..|...
T Consensus 322 ~~~mVg~~~~~-------i~~~pl~~~~~~~k~v~~~~~~~~~--~~a~~lr~~~f~~~ 371 (787)
T 3o8o_A 322 PSPLIGILENK-------IIRMPLVESVKLTKSVATAIENKDF--DKAISLRDTEFIEL 371 (787)
T ss_dssp CCEEEEESSSS-------EEEEEHHHHHHHHHHHHHHHHTTCH--HHHHHTSCTTHHHH
T ss_pred CCeEEEEECCE-------EEEEEHHHHHhccCCchHhhhcCCH--HHHHhccCHHHHHH
Confidence 7999999875 789999998876554321 1222 23457888887754
No 11
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=2.5e-70 Score=625.07 Aligned_cols=344 Identities=20% Similarity=0.265 Sum_probs=292.9
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCC---EEECChhhhccccccCCceecccCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCK---FVELSSEFIYPYRNQGGFDMLCSGR 164 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~---~~eLt~~~v~~~~n~GG~~~lGs~R 164 (570)
..++||||++|||||||||+||+|+++++. +.+.+||||++||+||++++ +.+|+|++++.|+++||+ +|||+|
T Consensus 179 ~~~krIgIlTsGGdaPGmNAaIRaVVr~a~--~~g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGT-iLGSsR 255 (941)
T 3opy_B 179 PVRKTIGVMTSGGDSPGMNPFVRAVVRAGI--YKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGT-NIGTAR 255 (941)
T ss_dssp -CCCCEEEEECSSCCTTHHHHHHHHHHHHH--HTTCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSC-SSCCCC
T ss_pred ccCCEEEEEeeCcCchhHHHHHHHHHHHHH--HCCCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCc-eeccCC
Confidence 447899999999999999999999999864 56889999999999999986 889999999999999998 999999
Q ss_pred CCC-CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH-----------------HhcCCCCceEEEeeccccCC
Q 008310 165 DKI-ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAEN-----------------FRSKDMKTRVIGCPKTIDGD 226 (570)
Q Consensus 165 ~k~-~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~-----------------~~~~g~~i~VIgVPKTIDND 226 (570)
.+. .+++.+.+++++|++++||+||+||||||+++|..|+++ ..+++.+++|||||||||||
T Consensus 256 ~~~f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDND 335 (941)
T 3opy_B 256 CKEFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDND 335 (941)
T ss_dssp CSGGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCC
T ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCC
Confidence 984 577889999999999999999999999999999988764 23346689999999999999
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHH
Q 008310 227 LKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVT 306 (570)
Q Consensus 227 L~~~~ie~s~GFdTA~k~~se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv 306 (570)
|+++|. |||||||+++++++|++|..+|.|++ ++||||||||+||||||+||||++||+|||||+++ +++++.
T Consensus 336 l~gTD~--TiGfdTAv~~i~eaId~I~~tA~Sh~-RvfvVEVMGR~aG~LAl~agLA~GAd~IlIPE~p~----~~~~~~ 408 (941)
T 3opy_B 336 MSSTDA--TIGAFSSLDRICRAIDYIDATANSHS-RAFIVEVMGRHCGWLGLLAGLATSADYILIPEKPA----SSREWQ 408 (941)
T ss_dssp CSSCSS--CEEHHHHHHHHHHHHHHHHSCC-CCS-EEEEEECCCSSCCHHHHHHHHHTTCSEEECTTSCC----CSSCHH
T ss_pred CCCCCC--CCChHHHHHHHHHHHHHHHhhhhccC-ceEEEEcCCCcccHHHHHHHHhcCCCEEEECCCCC----ChHHHH
Confidence 999885 99999999999999999999998875 58999999999999999999999999999999986 566778
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhh
Q 008310 307 DYITDIICKRSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLL 386 (570)
Q Consensus 307 ~~i~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~ 386 (570)
++|++.+++|...||+|+||+|+||+.+. +
T Consensus 409 ~~v~~~i~~~~~~gk~~~IVVVAEGa~~~----------------------~---------------------------- 438 (941)
T 3opy_B 409 DQMCDIVGKHRARGKRKTIVIVAEGAISN----------------------D---------------------------- 438 (941)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEECTTCBCT----------------------T----------------------------
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeCCcccc----------------------c----------------------------
Confidence 89999999999999999999999998641 1
Q ss_pred cCCCCCCcccchhhhHHHHHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 008310 387 ERDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKT 466 (570)
Q Consensus 387 ~rD~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~t 466 (570)
|+.. +.+.++ ++++++ ..+++|...+||.||||.||+|||.+|+.||..|++++++|.+
T Consensus 439 -----~~~i-----~~~~l~----~~i~~~-------~g~d~R~tvLGhiQRGG~Psa~DRilAtrlG~~AV~~l~~g~~ 497 (941)
T 3opy_B 439 -----LSPI-----SCDQVK----DVLVNR-------LGLDTRVTTLGHVQRGGTAVAFDRIYATLQGVEAVNAVLECDA 497 (941)
T ss_dssp -----CCBC-----CHHHHH----HHHHHT-------SCCEEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred -----CCcc-----hHHHHH----HHHHHH-------hCCceeecccChhhcCCCCChhhHHHHHHHHHHHHHHHHcCCC
Confidence 1110 122233 444433 2478999999999999999999999999999999999999997
Q ss_pred ---ceEEEEecCCCCccceEEeccchHhhhhhhhhcCC---cccceeeceeccCChhhHHH
Q 008310 467 ---GLIASVGNLGEPVEEWTVGGTALTSLMHVERRHGK---FKPVIKKAMVELEGKPFKTF 521 (570)
Q Consensus 467 ---G~m~~i~~l~~~~~~w~~~~vPl~~~~~~e~~~g~---~~p~i~~~~V~l~~~~f~~~ 521 (570)
|+|+++++.+ +..+||.+.+...+...+ .|.| ..-++|.|..|...
T Consensus 498 ~~~g~mVg~~~~~-------iv~~Pl~e~v~~~k~v~~a~~~~~f--~~a~~lr~~~f~~~ 549 (941)
T 3opy_B 498 DTPSPMIAIKEDQ-------ITRVPLVDAVELTQQVAKSIESRNF--KKAISLRDSEFVEH 549 (941)
T ss_dssp TSCCEEEEESSSC-------EEEEEHHHHHHHHHHHHHHHHTTCH--HHHHHHSCHHHHHH
T ss_pred CCCceEEEEECCE-------EEEEEHHHHHhccCCcHHHHhcCCH--HHHHHccCHHHHHH
Confidence 7999999875 789999998876554322 1222 23347888877654
No 12
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=7.8e-70 Score=619.30 Aligned_cols=345 Identities=22% Similarity=0.253 Sum_probs=293.5
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCC--CEEECChhhhccccccCCceecccCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKC--KFVELSSEFIYPYRNQGGFDMLCSGRD 165 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~--~~~eLt~~~v~~~~n~GG~~~lGs~R~ 165 (570)
..++||||++|||||||||+||+++++++. +.+.+||||++||+||+++ ++.+|+|++++.|+++||+ +|||+|.
T Consensus 208 ~~~krIaIlTSGGdaPGmNAaIRaVVr~a~--~~G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGT-iLGTsR~ 284 (989)
T 3opy_A 208 EGKKKIAIITSGGDAPGMNAAVRAVTRAGI--FYGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGT-IIGTARC 284 (989)
T ss_dssp CCSEEEEEEECSSCCTTHHHHHHHHHHHHH--HTTEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSC-SSCCCCS
T ss_pred ccCCEEEEEeeCCCchhHHHHHHHHHHHHH--HCCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCc-cccCCCC
Confidence 346899999999999999999999999864 4688999999999999998 5999999999999999997 9999999
Q ss_pred C-CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHH-------hc----------CCCCceEEEeeccccCCC
Q 008310 166 K-IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENF-------RS----------KDMKTRVIGCPKTIDGDL 227 (570)
Q Consensus 166 k-~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~-------~~----------~g~~i~VIgVPKTIDNDL 227 (570)
+ +.+++++.+++++|++++||+||+||||||+++|..|++++ .+ ++.+++||||||||||||
T Consensus 285 ~~f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl 364 (989)
T 3opy_A 285 KEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDM 364 (989)
T ss_dssp SSTTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCC
T ss_pred CcccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCC
Confidence 7 46788999999999999999999999999999999998753 22 246799999999999999
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHH
Q 008310 228 KCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTD 307 (570)
Q Consensus 228 ~~~~ie~s~GFdTA~k~~se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~ 307 (570)
+++|. |||||||+++++++|++|..+|.|++ ++||||||||+||||||++|||++||+|||||+++ +++++.+
T Consensus 365 ~gTD~--TiGFdTAl~~i~eaId~I~~TA~Sh~-RvfVVEVMGR~aG~LAl~agLA~GAd~IlIPE~pf----~l~~~~~ 437 (989)
T 3opy_A 365 CGTDS--TIGAYSSLERIIELVDYIDATAASHS-RAFVVEVMGRHCGWLGLMSGIATGADYIFIPERPP----SESNWKD 437 (989)
T ss_dssp TTCSC--CEEHHHHHHHHHHHHHHHHSSCCCTT-EEEEEECCCSSCTHHHHHHHHHHTCSEEECTTSCC----CTTTHHH
T ss_pred CCCCC--CCChhhHHHHHHHHHHHHHhhhhccC-ceEEEEcCCCchhHHHHHHHHhcCCCEEEeCCCCC----ChHHHHH
Confidence 99885 99999999999999999999998864 58999999999999999999999999999999997 6677788
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhc
Q 008310 308 YITDIICKRSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLE 387 (570)
Q Consensus 308 ~i~d~I~~R~~~gk~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~ 387 (570)
+|++.+++|..+||+|+||+|+||+.+. ++
T Consensus 438 ~l~~~i~k~~~~Gk~~~IVVVAEGa~~~----------------------~~---------------------------- 467 (989)
T 3opy_A 438 DLKKVCLRHREKGRRKTTVIVAEGAIDD----------------------QL---------------------------- 467 (989)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTCBCT----------------------TS----------------------------
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCcccc----------------------cc----------------------------
Confidence 8999999998999999999999998641 01
Q ss_pred CCCCCCcccchhhhHHHHHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCCC-
Q 008310 388 RDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKT- 466 (570)
Q Consensus 388 rD~~Gn~~ls~i~te~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~t- 466 (570)
+. + +.+ .+++.+++ ..+++|...+||.||||.||+|||.||+.||..|++++++|.+
T Consensus 468 -----~~----i-~~~----~l~~~l~~--------~G~dtR~tvLGHiQRGG~Psa~DRilAtrlG~~AV~~l~~g~~~ 525 (989)
T 3opy_A 468 -----NP----I-TSE----EVKDVLVE--------IGLDTRITRLGHVQRGGAPCAFDRFLATVQGVDAVRAVLESTPA 525 (989)
T ss_dssp -----CB----C-CHH----HHHHHHHT--------TTCEEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred -----cc----c-hHH----HHHHHHHH--------hCcchhhhhhhHHHcCCCCChhhHHHHHHHHHHHHHHHHcCCCC
Confidence 00 0 011 12333332 1378899999999999999999999999999999999999985
Q ss_pred --ceEEEEecCCCCccceEEeccchHhhhhhhhhcCC---cccceeeceeccCChhhHHHHH
Q 008310 467 --GLIASVGNLGEPVEEWTVGGTALTSLMHVERRHGK---FKPVIKKAMVELEGKPFKTFAS 523 (570)
Q Consensus 467 --G~m~~i~~l~~~~~~w~~~~vPl~~~~~~e~~~g~---~~p~i~~~~V~l~~~~f~~~~~ 523 (570)
|+|+++++.+ +..+||.+.+...+...+ .|.| ..-++|.|..|...-.
T Consensus 526 ~~g~mVgl~~~~-------iv~vPl~e~v~~~k~V~~a~~~k~f--~~a~~lr~~~F~~~~~ 578 (989)
T 3opy_A 526 IPSPVISILENK-------IVRQPLVESVAQTKTVSAAIEAKDF--DKALQLRDQEFATSYE 578 (989)
T ss_dssp SCCEEEEESSSS-------EEEEEHHHHHHHHHHHHHHHHTTCH--HHHHHTSCHHHHHHHH
T ss_pred CCCeEEEEECCE-------EEEEEHHHHHhccCCchHhhhccCH--HHHHhccChHHHHHHH
Confidence 8999999875 789999998876554321 1222 3445788988775433
No 13
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-69 Score=610.08 Aligned_cols=340 Identities=18% Similarity=0.214 Sum_probs=289.3
Q ss_pred CCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCccccc-CCCEEECChhhhccccccCCceecccCCC
Q 008310 87 ENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIM-KCKFVELSSEFIYPYRNQGGFDMLCSGRD 165 (570)
Q Consensus 87 ~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl-~~~~~eLt~~~v~~~~n~GG~~~lGs~R~ 165 (570)
..+++||||++|||||||||+||+|+++++. +.+++||||++||+||+ ++++++|++++++.|+++||+ +|||+|.
T Consensus 390 ~~~~~~IgIltsGGdapGmNaaIravv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt-~LGTsR~ 466 (787)
T 3o8o_A 390 VSDRLNIGIVHVGAPSAALNAATRAATLYCL--SHGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGS-EIGTNRS 466 (787)
T ss_dssp SSCCCEEEEEEESSCCSSHHHHHHHHHHHHH--HHTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSC-TTCCBCC
T ss_pred cccCcEEEEEccCCCCHHHHHHHHHHHHHHH--HCCCEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCc-eeccCCC
Confidence 3457899999999999999999999999864 45799999999999999 899999999999999999997 9999998
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCC-CCceEEEeeccccCCCCCCCCCCCCChhhHHHH
Q 008310 166 KIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKD-MKTRVIGCPKTIDGDLKCKDVPISFGFDTACKT 244 (570)
Q Consensus 166 k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g-~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~ 244 (570)
++. +++++++++|++++||+||+||||||+++|+.|++++.+.+ ++++||||||||||||+++|+ |||||||+++
T Consensus 467 ~~~--~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD~--t~GfdTA~~~ 542 (787)
T 3o8o_A 467 VAS--EDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEY--SLGVDTCLNA 542 (787)
T ss_dssp CGG--GCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCSC--CBTHHHHHHH
T ss_pred Cch--hhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCcC--CCCchHHHHH
Confidence 763 47889999999999999999999999999999999876443 568999999999999998885 9999999999
Q ss_pred HHHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHH-H--cCC
Q 008310 245 FSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRS-E--AGY 321 (570)
Q Consensus 245 ~se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~-~--~gk 321 (570)
++++|++|+.+|.|++++|||||||||+||||||+||||++||+|||||+++ +++++.+.|....+++. + +++
T Consensus 543 ~~eaid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~ga~~iliPE~~~----~~~~~~~~i~~~~~~~~~~~g~~~ 618 (787)
T 3o8o_A 543 LVNYTDDIKQSASATRRRVFVCEVQGGHSGYIASFTGLITGAVSVYTPEKKI----DLASIREDITLLKENFRHDKGENR 618 (787)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEEECCTTCTHHHHHHHHTTTCSEEECSSSCC----CHHHHHHHHHHHHHHHHHCCSCSS
T ss_pred HHHHHHHHHHHhhccCCcEEEEEeCCCCccHHHHHHHHhcCCCEEEeCCCCC----CHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999998888877899999999999999999999999999999999986 77777777655433322 2 345
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhh
Q 008310 322 NFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIET 401 (570)
Q Consensus 322 ~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~t 401 (570)
++.+|+++||.... .+
T Consensus 619 ~~~iivvaEg~~~~----------------------------------------------------------------~~ 634 (787)
T 3o8o_A 619 NGKLLVRNEQASSV----------------------------------------------------------------YS 634 (787)
T ss_dssp CCEEEEEETTSCSS----------------------------------------------------------------SC
T ss_pred CceEEEEeCCccCC----------------------------------------------------------------CC
Confidence 56899999996421 01
Q ss_pred HHHHHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC----------------
Q 008310 402 ERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGK---------------- 465 (570)
Q Consensus 402 e~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~---------------- 465 (570)
...|++++++++. ..|++|+..|||.||||.||+|||.+|++||..|++++.+|.
T Consensus 635 ~~~la~~i~~~~~---------~~~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~~Av~~l~~~~~~~~~~~~~~~~~~~~ 705 (787)
T 3o8o_A 635 TQLLADIISEASK---------GKFGVRTAIPGHVQQGGVPSSKDRVTASRFAVKCIKFIEQWNKKNEASPNTDAKVLRF 705 (787)
T ss_dssp HHHHHHHHHHHHT---------TSSEEEEEBCGGGGGCSSCCHHHHHHHHHHHHHHHHHHHHHHHTCC------------
T ss_pred HHHHHHHHHHHhC---------CCceeEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhCccccccccccccccccc
Confidence 2345666665542 358999999999999999999999999999999999999876
Q ss_pred -----------------CceEEEEecCCCCccceEEeccchHhhhh----hhhhcCCcccceee-ceec-cCChh
Q 008310 466 -----------------TGLIASVGNLGEPVEEWTVGGTALTSLMH----VERRHGKFKPVIKK-AMVE-LEGKP 517 (570)
Q Consensus 466 -----------------tG~m~~i~~l~~~~~~w~~~~vPl~~~~~----~e~~~g~~~p~i~~-~~V~-l~~~~ 517 (570)
+++|+++++. .+..+|+.++.+ ++.|.++..+|.+- .+++ |.|.+
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~iG~~~~-------~i~~~p~~~~~~~~~d~~~r~~~~~~w~~~~~~~~~l~~~~ 773 (787)
T 3o8o_A 706 KFDTHGEKVPTVEHEDDSAAVICVNGS-------HVSFKPIANLWENETNVELRKGFEVHWAEYNKIGDILSGRL 773 (787)
T ss_dssp --------------CGGGEEEEEEETT-------EEEEEEHHHHTTSBCTTTTCSBSCCCCHHHHHHHHHHTTHH
T ss_pred ccccccccccccccCCCceEEEEEECC-------EEEEeeHHHHHhhccchhhCCCcChHHHhHHHHHHHhcCCH
Confidence 6889999987 478999999864 57778888888742 2333 56654
No 14
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=3.6e-68 Score=607.31 Aligned_cols=329 Identities=18% Similarity=0.233 Sum_probs=283.0
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCccccc-CCCEEECChhhhccccccCCceecccCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIM-KCKFVELSSEFIYPYRNQGGFDMLCSGRDK 166 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl-~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k 166 (570)
.+++||||++|||||||||++|+|+++++. +.+.+||||++||+||+ ++++++|++++++.|.++||+ +|||+|.+
T Consensus 569 ~~~~rIgIltsGGdapGmNaaIravv~~a~--~~g~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGT-iLGTsR~~ 645 (941)
T 3opy_B 569 EKRKKIAIINVGAPAGGMNSAVYSMATYCM--SRGHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGS-EIGTNRTL 645 (941)
T ss_dssp GGCCEEEEEEESSCCTTHHHHHHHHHHHHH--HHTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSC-SSCEECCC
T ss_pred ccCcEEEEEecCCCcHHHHHHHHHHHHHHH--HCCCEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCc-EeccCCCC
Confidence 456899999999999999999999999864 45789999999999999 799999999999999999997 99999987
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC-CCCceEEEeeccccCCCCCCCCCCCCChhhHHHHH
Q 008310 167 IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSK-DMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTF 245 (570)
Q Consensus 167 ~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~-g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~ 245 (570)
+. ++++++++++|++++||+||+||||||+++|..|+++..+. ..+++||||||||||||+++|+ |||||||++++
T Consensus 646 ~~-~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD~--TiGfdTA~~~i 722 (941)
T 3opy_B 646 PN-DADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEY--SLGSDTCLNSF 722 (941)
T ss_dssp TT-TSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSC--CBTHHHHHHHH
T ss_pred cc-cchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCCC--CCChHHHHHHH
Confidence 64 34678999999999999999999999999999999976543 3568999999999999999886 99999999999
Q ss_pred HHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHH----cCC
Q 008310 246 SEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSE----AGY 321 (570)
Q Consensus 246 se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~----~gk 321 (570)
+++|++|+.+|.|++++|||||||||+||||||++|||++||+|||||+++ +++++.+.|... +++.. +++
T Consensus 723 ~eaid~i~~tA~ssh~RvfiVEvMGR~aG~LAl~agLA~GAd~ilIPE~~~----~l~~l~~~i~~l-~~~~~~~~g~~~ 797 (941)
T 3opy_B 723 MEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLACGAQISYVPEEGI----SLAQLEMDINSL-KESFANDQGKTK 797 (941)
T ss_dssp HHHHHHHHHHHHHC-CEEEEEEECSTTCCHHHHHHHHHHTCSEEECTTTCC----CHHHHHHHHHHH-HHHHHTCTTSCC
T ss_pred HHHHHHHHHHhhhcCCcEEEEEeCCcchhHHHHHHHHhhCCCEEEeCCCCC----CHHHHHHHHHHH-HHHHhhhhcCCC
Confidence 999999998888877889999999999999999999999999999999986 677777766443 33333 456
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhh
Q 008310 322 NFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIET 401 (570)
Q Consensus 322 ~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~t 401 (570)
++.+|+++||.... .+
T Consensus 798 ~~~iIvvaEga~~~----------------------------------------------------------------~~ 813 (941)
T 3opy_B 798 SGRLILKSENASKV----------------------------------------------------------------LT 813 (941)
T ss_dssp CCEEEEEEGGGCSS----------------------------------------------------------------SC
T ss_pred CceEEEEeCCccCC----------------------------------------------------------------CC
Confidence 77999999996421 01
Q ss_pred HHHHHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC----------------
Q 008310 402 ERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGK---------------- 465 (570)
Q Consensus 402 e~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~---------------- 465 (570)
...|+++|++++. ..|++|+..+||.||||.||+|||.+|+++|..|++++.+|.
T Consensus 814 ~~~la~~i~~~~~---------~g~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~Av~~l~~g~~~~~~~~~~~~~~~~~ 884 (941)
T 3opy_B 814 TEVISTIIDDEAS---------GRFDSKTAIPGHVQQGGIPSPMDRVRASRFAIRAVSFIERHSDRCQTFKNSISFRQTD 884 (941)
T ss_dssp HHHHHHHHHHHHT---------TSSEEEEECCCTTTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCCH
T ss_pred HHHHHHHHHHHhC---------CCceeEEccccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccc
Confidence 2345666666542 358999999999999999999999999999999999999998
Q ss_pred ----CceEEEEecCCCCccceEEeccchHhhhh----hhhhcCCccccee
Q 008310 466 ----TGLIASVGNLGEPVEEWTVGGTALTSLMH----VERRHGKFKPVIK 507 (570)
Q Consensus 466 ----tG~m~~i~~l~~~~~~w~~~~vPl~~~~~----~e~~~g~~~p~i~ 507 (570)
+++|+++++.+ +..+|+.++.+ ++.|.++..+|.+
T Consensus 885 ~~~~~~~~vG~~~~~-------i~~~pi~e~~~~~~d~~~r~p~~~~w~~ 927 (941)
T 3opy_B 885 EITSTAVVLGIHKSQ-------LRFTPIRQLYDFESDVPRRMRKNIFWSN 927 (941)
T ss_dssp HHHTTEEEEEECC-C-------EEEEEHHHHHHTSCCTTTTCC-CCSTHH
T ss_pred cCCCceEEEEEECCE-------EEEEEHHHHHhhccchhhcCCcchHHHh
Confidence 89999999975 78999999864 5677888888864
No 15
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-68 Score=600.29 Aligned_cols=329 Identities=19% Similarity=0.271 Sum_probs=283.8
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccC-CCEEECChhhhccccccCCceecccCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMK-CKFVELSSEFIYPYRNQGGFDMLCSGRDK 166 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~-~~~~eLt~~~v~~~~n~GG~~~lGs~R~k 166 (570)
.+++||||++|||||||||++|+++++++. +.+++||||++||+||++ +++.+|++++++.|.++||+ +|||+|.+
T Consensus 391 ~~~~~IgIltsGGdapGmNaaIravv~~a~--~~g~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt-~LGTsR~~ 467 (766)
T 3o8o_B 391 DKRLKIAIVNVGAPAGGINSAVYSMATYCM--SQGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGS-EIGTNRVT 467 (766)
T ss_dssp SCCCEEEEEEESSCCTTHHHHHHHHHHHHH--HHTCEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSC-TTCCCCCC
T ss_pred ccCcEEEEEecCCCcHHHHHHHHHHHHHHH--HCCCEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCc-eEccCCCC
Confidence 446899999999999999999999999864 357899999999999997 78999999999999999997 99999987
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCC-CCceEEEeeccccCCCCCCCCCCCCChhhHHHHH
Q 008310 167 IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKD-MKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTF 245 (570)
Q Consensus 167 ~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g-~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~ 245 (570)
+. .+++++++++|++++||+||+||||||+++|..|+++..+.. .+++||||||||||||+++|+ |||||||++++
T Consensus 468 ~~-~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~--T~GfdTA~~~~ 544 (766)
T 3o8o_B 468 PE-EADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEY--SLGSDTALNAL 544 (766)
T ss_dssp GG-GGCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCSC--CBTHHHHHHHH
T ss_pred Cc-cchHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCCC--CCChhHHHHHH
Confidence 63 456889999999999999999999999999999998654332 468999999999999999886 99999999999
Q ss_pred HHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHH----cCC
Q 008310 246 SEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSE----AGY 321 (570)
Q Consensus 246 se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~----~gk 321 (570)
+++|++|+.+|.|++++|||||||||+||||||++|||++||+|||||+++ +++++.+.|..... +.. +++
T Consensus 545 ~~aid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~ga~~ilIPE~~~----~~~~~~~~i~~~~~-~~~~~~~~~~ 619 (766)
T 3o8o_B 545 MEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAVGAQVSYVPEEGI----SLEQLSEDIEYLAQ-SFEKAEGRGR 619 (766)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEEECCTTCCHHHHHHHHHHTCSEEECTTTCC----CHHHHHHHHHHHHH-HHHHHTTCTT
T ss_pred HHHHHHHHHHhhccCCcEEEEEeCCCchhHHHHHHHHhhCCCEEEeCCCCC----CHHHHHHHHHHHHH-HHhhhhccCC
Confidence 999999998888877889999999999999999999999999999999986 66677666644332 322 457
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhh
Q 008310 322 NFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIET 401 (570)
Q Consensus 322 ~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~t 401 (570)
++.+|+++||.... + +
T Consensus 620 ~~~iivvaEg~~~~-------------------------~---------------------------------------~ 635 (766)
T 3o8o_B 620 FGKLILKSTNASKA-------------------------L---------------------------------------S 635 (766)
T ss_dssp CCEEEEEEGGGCSS-------------------------C---------------------------------------C
T ss_pred CceEEEEeCCcCCC-------------------------C---------------------------------------c
Confidence 88999999986321 0 1
Q ss_pred HHHHHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC----------------
Q 008310 402 ERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGK---------------- 465 (570)
Q Consensus 402 e~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~---------------- 465 (570)
...|++++++++. ..|++|+..|||.||||.||+|||.+|+++|..|++++++|.
T Consensus 636 ~~~la~~i~~~~~---------~~~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~~Av~~l~~g~~~~~~~~~~~~~~~~~ 706 (766)
T 3o8o_B 636 ATKLAEVITAEAD---------GRFDAKPAYPGHVQQGGLPSPIDRTRATRMAIKAVGFIKDNQAAIAEARAAEENFNAD 706 (766)
T ss_dssp HHHHHHHHHHHHT---------TSCEEEEEBCGGGGGCSSCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHSSSSSTTCCC
T ss_pred HHHHHHHHHHHhC---------CCceEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccc
Confidence 2345666655532 358999999999999999999999999999999999999999
Q ss_pred ------CceEEEEecCCCCccceEEeccchHhhhh----hhhhcCCccccee
Q 008310 466 ------TGLIASVGNLGEPVEEWTVGGTALTSLMH----VERRHGKFKPVIK 507 (570)
Q Consensus 466 ------tG~m~~i~~l~~~~~~w~~~~vPl~~~~~----~e~~~g~~~p~i~ 507 (570)
+++|+++++.+ +..+|+.++.+ ++.|.++..+|.+
T Consensus 707 ~~~~~~~~~~vG~~~~~-------i~~~pi~~~~~~~~d~~~r~~~~~~w~~ 751 (766)
T 3o8o_B 707 DKTISDTAAVVGVKGSH-------VVYNSIRQLYDYETEVSMRMPKVIHWQA 751 (766)
T ss_dssp CHHHHTTSEEEECSSSC-------CEEEEHHHHHHHTBCGGGSSBSSCSCHH
T ss_pred cccCCCceEEEEEECCE-------EEEEeHHHHHhhccchhhCCCCChhHHh
Confidence 89999999885 67899999874 4777888888874
No 16
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=4.6e-67 Score=596.59 Aligned_cols=328 Identities=18% Similarity=0.226 Sum_probs=272.9
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCccccc-CCCEEECChhhhccccccCCceecccCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIM-KCKFVELSSEFIYPYRNQGGFDMLCSGRDK 166 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl-~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k 166 (570)
.+++||||++|||||||||+||+|+++++. +.+++||||++||+||+ ++++++|++++++.|.++||+ +|||+|.+
T Consensus 596 ~~~~rIgIltsGGdaPGmNAaIravV~~a~--~~g~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGT-iLGTsR~~ 672 (989)
T 3opy_A 596 SSRLNIAIIHVGAPTSALNPATRVATLNSL--AKGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGS-EIGTNRSL 672 (989)
T ss_dssp GGCCEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSC-SSCCBCCC
T ss_pred cCCceEEEEecCCCCHHHHHHHHHHHHHHH--HCCCEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCc-EeccCCCC
Confidence 456899999999999999999999999854 46899999999999999 999999999999999999997 99999986
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCC-CCceEEEeeccccCCCCCCCCCCCCChhhHHHHH
Q 008310 167 IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKD-MKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTF 245 (570)
Q Consensus 167 ~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g-~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~ 245 (570)
. .+++++++++|++++||+||+||||||+++|..|+++..+.+ ++++||||||||||||+++|+ |||||||++++
T Consensus 673 ~--~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~--TiGFdTAvn~~ 748 (989)
T 3opy_A 673 P--SDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEY--SLGSDTCLNTL 748 (989)
T ss_dssp G--GGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSC--CBTHHHHHHHH
T ss_pred c--hhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcC--CCChHHHHHHH
Confidence 4 367999999999999999999999999999999999865432 468999999999999999886 99999999999
Q ss_pred HHHHHHHHHHhhhcCCeeEEEEecCCCCcHHHHHhhhhcCCcEEEECCchhhhhcchHHHHHHHHHHHHHHHH--cC--C
Q 008310 246 SEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSE--AG--Y 321 (570)
Q Consensus 246 se~I~ni~~Da~S~~k~~~fIevMGR~ag~lAle~aLat~pnivlIpEe~~~~~~tL~~iv~~i~d~I~~R~~--~g--k 321 (570)
+++|++|+.+|.|++++|||||||||+||||||+||||++|++|||||+++ +++++.+.|... .+|+. +| +
T Consensus 749 ~eaId~i~~tA~ssh~RvfIVEVMGR~aG~LAl~agLA~GAd~ilIPE~~f----~l~~l~~~i~~l-~~~~~~~~g~~~ 823 (989)
T 3opy_A 749 SGYCDAVKQSASASRRRTFVVEVQGGYSGYLASYAGLITGALAVYTPENPI----NLQTVQEDIELL-TRTYEEDDGKNR 823 (989)
T ss_dssp HHHHHHHHHHTC-CCCSEEEEEECCTTCSHHHHHHHHHHTCSCEECTTSCC----CHHHHHHHHHHH-HHHHTTCC---C
T ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCcchhHHHHHHHHhcCCCEEEeCCCCC----CHHHHHHHHHHH-HHHHHHhccCCc
Confidence 999999999998877889999999999999999999999999999999986 677777766443 34433 34 5
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHHHHHHhcCcccCCCchhhhcchhhHHHhhhchHHHHHHhhhcCCCCCCcccchhhh
Q 008310 322 NFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIET 401 (570)
Q Consensus 322 ~~gvIli~EGl~~~ipe~~~li~el~~~~~~~~~d~~g~~~~~ls~~~~~lf~~lp~~i~~ql~~~rD~~Gn~~ls~i~t 401 (570)
++++|+++||.... + +
T Consensus 824 ~~~IIvvaEga~~~--------------------------------------------------------~--------~ 839 (989)
T 3opy_A 824 SGKIFIHNEKASKV--------------------------------------------------------Y--------T 839 (989)
T ss_dssp CCEEEEEESSSCSS--------------------------------------------------------S--------C
T ss_pred cceEEEEeCCCcCC--------------------------------------------------------C--------C
Confidence 67899999997531 0 0
Q ss_pred HHHHHHHHHHHHHHhhccCccccccccccccCcccccCCCCCHHHHHHHHHHHHHHHHHHHcCC----------------
Q 008310 402 ERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGK---------------- 465 (570)
Q Consensus 402 e~lL~~lV~~~L~~r~~~g~y~~~f~~~~~~lGy~~R~~~PS~fD~~~a~~lG~~A~~li~~g~---------------- 465 (570)
.+.|++.+ +++. ++.|++|+..|||.||||.||+|||.+|.+||..|++++.++.
T Consensus 840 ~~~la~~i----~e~~-----~~~~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~Ave~l~~~~~~~~~~~~~~~~~~~~ 910 (989)
T 3opy_A 840 TDLIAAII----GEAG-----KGRFESRTAVPGHVQQGKSPSSIDRVNACRLAIKCCNFIEDANFQVKHNANLSADERHL 910 (989)
T ss_dssp HHHHHHHH----HHTT-----TTTSCEEEECCGGGGGCSSCCHHHHHHHHHHHHHHHHHHTCGGGSCCSBSCCCHHHHHH
T ss_pred HHHHHHHH----HHhc-----CCCceeEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Confidence 12334444 3332 1358999999999999999999999999999999999999876
Q ss_pred -----------------------CceEEEEecCCCCccceEEeccchHhhh----hhhhhcCCccccee
Q 008310 466 -----------------------TGLIASVGNLGEPVEEWTVGGTALTSLM----HVERRHGKFKPVIK 507 (570)
Q Consensus 466 -----------------------tG~m~~i~~l~~~~~~w~~~~vPl~~~~----~~e~~~g~~~p~i~ 507 (570)
+.+++++++. .+...|+..|. +++.|.++..+|.+
T Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~-------~~~~~~~~~l~~~~~d~~~r~p~~~~W~~ 972 (989)
T 3opy_A 911 RFFYDDGVKTSAVSGKSSVIDDNTSVVIGIQGS-------EVTFTPVKQLWENETHHKWRKGKNVHWEQ 972 (989)
T ss_dssp TEEEETTEEEETTTCSSCCCCGGGEEEEEEETT-------EEEEEEHHHHHHHSCTTTC----CCCCHH
T ss_pred cccccccccccccccccccCCCCcEEEEEEECC-------EEEEEEHHHhhhhccchhhCCCcChHHHh
Confidence 2345556554 36788999884 46778888888874
No 17
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=89.39 E-value=15 Score=35.74 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=67.3
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIET 169 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~ 169 (570)
..+|||++..-..|-...++.|+-++++.. +.++.-+ .+. .+
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~---------------------------------~~~---~~ 43 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--GAKVFVQ---------------------------------SAN---GN 43 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--SCEEEEE---------------------------------ECT---TC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEEE---------------------------------CCC---CC
Confidence 468999999888899999999999887653 3332210 000 13
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
.+.....++.+...++||+|+.+.+.+... .+.+.+.+.| ++||.+ |.+.....++.++++|-
T Consensus 44 ~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~--~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 106 (313)
T 3m9w_A 44 EETQMSQIENMINRGVDVLVIIPYNGQVLS--NVVKEAKQEG--IKVLAY----DRMINDADIDFYISFDN 106 (313)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECSSTTSCH--HHHHHHHTTT--CEEEEE----SSCCTTSCCSEEEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChhhhH--HHHHHHHHCC--CeEEEE----CCcCCCCCceEEEecCH
Confidence 455567788888999999999998765311 1223333344 567754 56665544444777764
No 18
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=84.74 E-value=0.75 Score=45.88 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcC-------CCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeec
Q 008310 173 FKQAEETVKKLD-------LDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 221 (570)
Q Consensus 173 ~~~~~~~l~k~~-------Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 221 (570)
.+++.+.|++.+ .|.+|++|||||+..|+... .....+++|+|||-
T Consensus 17 ~~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~---~~~~~~~PilGIn~ 69 (272)
T 2i2c_A 17 RLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQY---EERLDEIAFIGIHT 69 (272)
T ss_dssp HHHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHT---GGGTTTCEEEEEES
T ss_pred HHHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHH---hhcCCCCCEEEEeC
Confidence 344555555554 59999999999998876542 22212578999984
No 19
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=84.47 E-value=0.44 Score=47.71 Aligned_cols=90 Identities=19% Similarity=0.141 Sum_probs=50.9
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIET 169 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~ 169 (570)
++||+|+.-.+ .+.....+..+.+.+++ .+.+++.......++ + ..|... . .
T Consensus 5 mkki~ii~np~-~~~~~~~~~~i~~~l~~--~g~~v~~~~~~~~~~-------------~----~~~~~~-------~-~ 56 (292)
T 2an1_A 5 FKCIGIVGHPR-HPTALTTHEMLYRWLCD--QGYEVIVEQQIAHEL-------------Q----LKNVPT-------G-T 56 (292)
T ss_dssp CCEEEEECC--------CHHHHHHHHHHH--TTCEEEEEHHHHHHT-------------T----CSSCCE-------E-C
T ss_pred CcEEEEEEcCC-CHHHHHHHHHHHHHHHH--CCCEEEEecchhhhc-------------c----cccccc-------c-c
Confidence 57899999866 46777788888888765 355666543322211 0 001100 0 1
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEee
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 220 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 220 (570)
.+ . ...+.|.+|++|||||+..|+... .. .+++++|||
T Consensus 57 ~~---~-----~~~~~D~vi~~GGDGT~l~a~~~~---~~--~~~P~lGI~ 94 (292)
T 2an1_A 57 LA---E-----IGQQADLAVVVGGDGNMLGAARTL---AR--YDINVIGIN 94 (292)
T ss_dssp HH---H-----HHHHCSEEEECSCHHHHHHHHHHH---TT--SSCEEEEBC
T ss_pred hh---h-----cccCCCEEEEEcCcHHHHHHHHHh---hc--CCCCEEEEE
Confidence 11 1 124689999999999988876442 22 257899998
No 20
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=78.54 E-value=17 Score=34.65 Aligned_cols=108 Identities=11% Similarity=0.063 Sum_probs=65.7
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
.+..+|||++..-..|=...++.|+-++++.. |.++.-+. ..
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~------------------------~~------------ 47 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--KYEALVAT------------------------SQ------------ 47 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEEEEE------------------------CS------------
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--CCEEEEEC------------------------CC------------
Confidence 34579999999888888999999999887653 33332110 00
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhH
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTA 241 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA 241 (570)
.+.+.....++.+...++||+|+.+.+..... .+.+.+.+.+ ++||.+ |.+......-.++++|-.
T Consensus 48 ~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~--~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~ 113 (293)
T 3l6u_A 48 NSRISEREQILEFVHLKVDAIFITTLDDVYIG--SAIEEAKKAG--IPVFAI----DRMIRSDAVVSSITSNNQ 113 (293)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH--HHHHHHHHTT--CCEEEE----SSCCCCTTCSEEEEECHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCChHHHH--HHHHHHHHcC--CCEEEe----cCCCCCCcceeEEecCHH
Confidence 13455567778888999999999988765421 1123333344 567765 444443222246666643
No 21
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=76.64 E-value=4 Score=42.91 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCC----------------CCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKD----------------MKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g----------------~~i~VIgVPKTI 223 (570)
+.+.+.++++.+++.+.|.+|-|||--.++.|..+|-.+...+ -.+++|.||-|-
T Consensus 91 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTa 161 (408)
T 1oj7_A 91 AYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLP 161 (408)
T ss_dssp BHHHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCC
Confidence 5688999999999999999999999988888888876543222 357899999764
No 22
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=75.76 E-value=55 Score=31.00 Aligned_cols=154 Identities=12% Similarity=0.115 Sum_probs=84.4
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+..+|||++..-..|-...++.|+.++++.. |.++.-+ +.. .
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~------------------------~~~------------~ 45 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL--GGTAIAL------------------------DAG------------R 45 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT--TCEEEEE------------------------ECT------------T
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEEE------------------------cCC------------C
Confidence 3479999999888888889999999987653 3222211 011 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEV 248 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~ 248 (570)
+.+.....++.+...++||+|+.+.+.+.... ..+.+.+.+ ++||.+ |.+..... .++++|-.. ....+
T Consensus 46 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~--~~~~~~~~~--iPvV~~----~~~~~~~~--~~V~~D~~~-~g~~~ 114 (291)
T 3l49_A 46 NDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNP--WLQKINDAG--IPLFTV----DTATPHAI--NNTTSNNYS-IGAEL 114 (291)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEEESSCHHHHHH--HHHHHHHTT--CCEEEE----SCCCTTCS--EEEEECHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH--HHHHHHHCC--CcEEEe----cCCCCCcC--ceEecChHH-HHHHH
Confidence 34555677888889999999999887543322 223344445 557765 33333211 366666432 11222
Q ss_pred HHHHHHHhhhcCCeeEEEEecCCCCcHH------HHHhhhhcCCcEEEECCc
Q 008310 249 IGNVMTDARSSGKYYHFIRLMGRAASHI------TLECALQTHPNIAIIGEE 294 (570)
Q Consensus 249 I~ni~~Da~S~~k~~~fIevMGR~ag~l------Ale~aLat~pnivlIpEe 294 (570)
...+......+ +.+.|+ .|...... +..-+++.++++-++.++
T Consensus 115 ~~~l~~~~~g~-~~i~~i--~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~ 163 (291)
T 3l49_A 115 ALQMVADLGGK-GNVLVF--NGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPE 163 (291)
T ss_dssp HHHHHHHHTTC-EEEEEE--CSCTTSHHHHHHHHHHHHHHHTCTTEEECSSC
T ss_pred HHHHHHHcCCC-ceEEEE--eCCCCCchHHHHHHHHHHHHHHCCCCEEEeee
Confidence 23333222333 334444 34322211 223455556677665544
No 23
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=74.23 E-value=9 Score=36.85 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=65.9
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
.+..+|||++..-..|-...++.|+-++++.. +.++.-+. ..
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~------------------------~~------------ 47 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHK--GYSVLLAN------------------------TA------------ 47 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEEEE------------------------CT------------
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHC--CCEEEEEe------------------------CC------------
Confidence 34579999999888888899999999887653 44433111 00
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
.+.+.....++.+...++||+|+.+.+.+.. +.+.+.+.+ ++||. +|.+.....+ .++++|-
T Consensus 48 ~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~~~--iPvV~----~~~~~~~~~~-~~V~~D~ 109 (291)
T 3egc_A 48 EDIVREREAVGQFFERRVDGLILAPSEGEHD----YLRTELPKT--FPIVA----VNRELRIPGC-GAVLSEN 109 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCCSSCCH----HHHHSSCTT--SCEEE----ESSCCCCTTC-EEEEECH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCChH----HHHHhhccC--CCEEE----EecccCCCCC-CEEEECc
Confidence 1234556778888999999999999876221 223344444 56774 4555553332 3555554
No 24
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=73.43 E-value=4.1 Score=41.49 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=32.9
Q ss_pred HcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCC
Q 008310 182 KLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 228 (570)
Q Consensus 182 k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 228 (570)
..+.|.+|++|||||...+..- +.+.+.++++.+||.==-||+.
T Consensus 78 ~~~~d~vvv~GGDGTv~~v~~~---l~~~~~~~pl~iIP~GT~N~lA 121 (337)
T 2qv7_A 78 HENYDVLIAAGGDGTLNEVVNG---IAEKPNRPKLGVIPMGTVNDFG 121 (337)
T ss_dssp TTTCSEEEEEECHHHHHHHHHH---HTTCSSCCEEEEEECSSCCHHH
T ss_pred hcCCCEEEEEcCchHHHHHHHH---HHhCCCCCcEEEecCCcHhHHH
Confidence 4578999999999998776533 3233567899999986667775
No 25
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=73.08 E-value=67 Score=30.71 Aligned_cols=107 Identities=7% Similarity=-0.054 Sum_probs=66.4
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+.++||++......|=...++.|+-++++.. |.++.-+ ..+. .
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~--------------------------------~~~~---~ 45 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQAL--NVTVEYR--------------------------------GAAQ---Y 45 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHH--TCEEEEE--------------------------------ECSS---S
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHc--CCEEEEe--------------------------------CCCc---C
Confidence 3479999999999999999999999987764 3333211 0000 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
+.+...+.++.+...++||+|+.+.+.+... ..+ +.+.+.| ++||.+ |++..+...-.++++|-
T Consensus 46 ~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~ 109 (305)
T 3g1w_A 46 DIQEQITVLEQAIAKNPAGIAISAIDPVELT-DTI-NKAVDAG--IPIVLF----DSGAPDSHAHSFLGTNN 109 (305)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEECCSSTTTTH-HHH-HHHHHTT--CCEEEE----SSCCTTSCCSCEEECCH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCCCHHHHH-HHH-HHHHHCC--CcEEEE----CCCCCCCceeEEECcCH
Confidence 3455667788888899999999987765211 112 2233344 567754 55554432124677765
No 26
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=72.96 E-value=40 Score=32.12 Aligned_cols=110 Identities=14% Similarity=0.081 Sum_probs=66.0
Q ss_pred CCccEEEEEecCC-CCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCC
Q 008310 88 NKSLKIGVVLSGG-QAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDK 166 (570)
Q Consensus 88 ~~~~~IGIv~sGG-~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k 166 (570)
.+..+|||++..- ..|-...++.|+-++++... +..+.-+. ....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~-g~~~~~~~---------------------------------~~~~ 51 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYS-DFNISANI---------------------------------THYD 51 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTG-GGCEEEEE---------------------------------EEEC
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHH-hCCeEEEE---------------------------------EcCC
Confidence 4568999999988 88999999999998876531 12211110 0000
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCchhH-HHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 167 IETPEQFKQAEETVKKLDLDGLVVIGGDDSN-TNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 167 ~~~~e~~~~~~~~l~k~~Id~LviIGGddS~-t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
-.+++.....++.+...++||+|+.+.+... ..+ + +.+.+.+ ++||.+ |+++.....-.++++|-
T Consensus 52 ~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~--~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 117 (304)
T 3gbv_A 52 PYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGF--T-DALNELG--IPYIYI----DSQIKDAPPLAFFGQNS 117 (304)
T ss_dssp SSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHH--H-HHHHHHT--CCEEEE----SSCCTTSCCSEEEECCH
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHH--H-HHHHHCC--CeEEEE----eCCCCCCCceEEEecCh
Confidence 1245666778888999999999999987542 221 1 2233334 557654 55554322123566654
No 27
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=71.31 E-value=9.1 Score=39.47 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 222 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 222 (570)
.+.++++.+.+++.+.|.+|-|||--.++.|..+| +++ .+++|.||-|
T Consensus 72 ~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA-~~~----~~p~i~IPTT 119 (370)
T 1jq5_A 72 RNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVA-DEL----DAYIVIVPTA 119 (370)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHH-HHH----TCEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHH-Hhc----CCCEEEeccc
Confidence 36688899999999999999999988888888888 432 4789999988
No 28
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=70.30 E-value=40 Score=32.01 Aligned_cols=105 Identities=19% Similarity=0.174 Sum_probs=65.4
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCCh
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETP 170 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~ 170 (570)
.+|||++..-..|-...++.|+-+.++.. |.++.-+. +. .+.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~------------------------~~------------~~~ 57 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQ--GYSMLLTS------------------------TN------------NNP 57 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHT--TCEEEEEE------------------------CT------------TCH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEEEe------------------------CC------------CCh
Confidence 79999999999999999999999887653 44433111 00 123
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHH-HHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNT-NACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t-~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
+.....++.+...++||+|+.+.+.+.. ....+.+.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 58 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~--iPvV~~----~~~~~~~~~-~~V~~d~ 121 (298)
T 3tb6_A 58 DNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNG--IPFAMI----NASYAELAA-PSFTLDD 121 (298)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTT--CCEEEE----SSCCTTCSS-CEEEECH
T ss_pred HHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcC--CCEEEE----ecCcCCCCC-CEEEeCc
Confidence 4556778888899999999999875311 0111223334445 557644 555543322 3566554
No 29
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=70.05 E-value=2.6 Score=42.55 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=36.5
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHH--HHHHHHHHHHHH
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTAC--KTFSEVIGNVMT 254 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~--k~~se~I~ni~~ 254 (570)
+.|.+|++|||||+-.|+... . +. ++|+||.. -++||-|.. .-+-+.+..+..
T Consensus 68 ~~DlvIvlGGDGT~L~aa~~~---~--~~-~PilGIN~------------G~lGFLt~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 68 NFDFIVSVGGDGTILRILQKL---K--RC-PPIFGINT------------GRVGLLTHASPENFEVELKKAVE 122 (278)
T ss_dssp GSSEEEEEECHHHHHHHHTTC---S--SC-CCEEEEEC------------SSSCTTCCBBTTBCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHh---C--CC-CcEEEECC------------CCCccccccCHHHHHHHHHHHHh
Confidence 569999999999998776442 1 23 89999984 178887664 334455555544
No 30
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=69.87 E-value=8.8 Score=40.00 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC-------------CCCceEEEeeccccC
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSK-------------DMKTRVIGCPKTIDG 225 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~-------------g~~i~VIgVPKTIDN 225 (570)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-.+... .-.+++|.||-|.-.
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagt 142 (383)
T 3ox4_A 73 TVTAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGT 142 (383)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSC
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCc
Confidence 568899999999999999999999988888888887665321 125789999988743
No 31
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=69.79 E-value=9.3 Score=40.05 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 222 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 222 (570)
+.+.++++++.+++.+.|.+|-|||--+++.|..++- +. .+++|.||-|
T Consensus 91 ~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~-~~----~~p~i~IPTT 139 (387)
T 3uhj_A 91 CTSEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAI-DT----GARIVIAPTI 139 (387)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-HT----TCEEEECCSS
T ss_pred CHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHH-hc----CCCEEEecCc
Confidence 4578899999999999999999999888888888873 32 5789999988
No 32
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=69.61 E-value=23 Score=33.32 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=64.8
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIET 169 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~ 169 (570)
..+|||++..-..|-...++.|+-++++.. |.++.-+. .. .+
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~------------------------~~------------~~ 43 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARAR--GYQLLIAS------------------------SD------------DQ 43 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHT--TCEEEEEE------------------------CT------------TC
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHC--CCEEEEEe------------------------CC------------CC
Confidence 368999999988899999999999887653 33432110 00 12
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
.+.....++.+...++||+|+.+.+.... ..+ +.+.+.+ ++||. +|++.....+ .++++|-
T Consensus 44 ~~~~~~~~~~l~~~~vdgiIi~~~~~~~~--~~~-~~~~~~~--iPvV~----~~~~~~~~~~-~~V~~d~ 104 (272)
T 3o74_A 44 PDSERQLQQLFRARRCDALFVASCLPPED--DSY-RELQDKG--LPVIA----IDRRLDPAHF-CSVISDD 104 (272)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCSSC--CHH-HHHHHTT--CCEEE----ESSCCCTTTC-EEEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccH--HHH-HHHHHcC--CCEEE----EccCCCcccc-CEEEEch
Confidence 35556778888899999999998773311 112 2333345 55664 4666654333 3566553
No 33
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=68.81 E-value=8 Score=40.19 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-. . .+++|.||-|-
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~P~i~IPTTa 122 (364)
T 3iv7_A 73 PIEVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT---T--ALPIVAIPTTY 122 (364)
T ss_dssp BHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEcCCc
Confidence 56889999999999999999999998888888887753 2 46899999887
No 34
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=68.66 E-value=8.7 Score=39.83 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCC---------------CCceEEEeecccc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKD---------------MKTRVIGCPKTID 224 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g---------------~~i~VIgVPKTID 224 (570)
+.+.++++++.+++.+.|.+|-|||--.++.|..++-.+...+ -.+++|.||-|.-
T Consensus 73 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~g 143 (386)
T 1rrm_A 73 TITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAG 143 (386)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSS
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCC
Confidence 5688999999999999999999999888888888876553211 2578999998763
No 35
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=68.17 E-value=7.4 Score=39.55 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=31.2
Q ss_pred HcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCC
Q 008310 182 KLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 228 (570)
Q Consensus 182 k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 228 (570)
..+.|.+|++|||||+..+..-.... ..+.++++..+|.==-||+.
T Consensus 80 ~~~~d~vvv~GGDGTl~~v~~~l~~~-~~~~~~plgiiP~Gt~N~fa 125 (332)
T 2bon_A 80 KFGVATVIAGGGDGTINEVSTALIQC-EGDDIPALGILPLGTANDFA 125 (332)
T ss_dssp HHTCSEEEEEESHHHHHHHHHHHHHC-CSSCCCEEEEEECSSSCHHH
T ss_pred hcCCCEEEEEccchHHHHHHHHHhhc-ccCCCCeEEEecCcCHHHHH
Confidence 45789999999999987765432211 11456788889975556654
No 36
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=67.02 E-value=48 Score=31.39 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=65.7
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
.+..+|||++..-..|-...++.|+-+++++. |.++.-+. ..
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~------------------------~~------------ 46 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESR--GYIGVLFD------------------------AN------------ 46 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTT--TCEEEEEE------------------------CT------------
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEEEe------------------------CC------------
Confidence 34579999999888888899999998886543 44433111 00
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
.+.+...+.++.+...++||+|+.+.+. .. ..+.+.+.+ ++||.+ |.++....+ .++++|-
T Consensus 47 ~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~----~~~~l~~~~--iPvV~i----~~~~~~~~~-~~V~~D~ 107 (276)
T 3jy6_A 47 ADIEREKTLLRAIGSRGFDGLILQSFSN-PQ----TVQEILHQQ--MPVVSV----DREMDACPW-PQVVTDN 107 (276)
T ss_dssp TCHHHHHHHHHHHHTTTCSEEEEESSCC-HH----HHHHHHTTS--SCEEEE----SCCCTTCSS-CEEECCH
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCc-HH----HHHHHHHCC--CCEEEE----ecccCCCCC-CEEEECh
Confidence 1234456778888899999999999887 22 223344444 567754 555543322 3566553
No 37
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=66.71 E-value=4.1 Score=41.22 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=24.5
Q ss_pred cCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEee
Q 008310 183 LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 220 (570)
Q Consensus 183 ~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 220 (570)
.+.|.+|++|||||+..|+..... . +++|+|||
T Consensus 74 ~~~d~vi~~GGDGT~l~a~~~~~~---~--~~pvlgi~ 106 (307)
T 1u0t_A 74 DGCELVLVLGGDGTFLRAAELARN---A--SIPVLGVN 106 (307)
T ss_dssp --CCCEEEEECHHHHHHHHHHHHH---H--TCCEEEEE
T ss_pred cCCCEEEEEeCCHHHHHHHHHhcc---C--CCCEEEEe
Confidence 468999999999998887655322 1 46899998
No 38
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=66.54 E-value=8.9 Score=40.08 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHcC---CCEEEEecCchhHHHHHHHHHHHhcC-------------CCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLD---LDGLVVIGGDDSNTNACLLAENFRSK-------------DMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~---Id~LviIGGddS~t~A~~Lae~~~~~-------------g~~i~VIgVPKTI 223 (570)
+.+.++++++.+++.+ .|.+|-|||--+++.|..+|-.+... +-.+++|.||-|-
T Consensus 91 t~~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTa 161 (375)
T 3rf7_A 91 TTVQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVS 161 (375)
T ss_dssp BHHHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSC
T ss_pred CHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCC
Confidence 5688999999999998 99999999988898888887654221 1247899999775
No 39
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=66.47 E-value=39 Score=33.61 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=56.5
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
.+..+|||++..-.-|-...++.|+-+.++.. |..++-+. ..
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~------------------------~~------------ 109 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQG--GLQLLLGY------------------------TA------------ 109 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHHT--TCEEEEEE------------------------CT------------
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEEEe------------------------CC------------
Confidence 34568999998888888888999998887653 44432110 10
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
.+.+...+.++.+...++||+|+.+.+.+.... +.+.+.+ ++||.+
T Consensus 110 ~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~----~~l~~~~--iPvV~i 155 (355)
T 3e3m_A 110 YSPEREEQLVETMLRRRPEAMVLSYDGHTEQTI----RLLQRAS--IPIVEI 155 (355)
T ss_dssp TCHHHHHHHHHHHHHTCCSEEEEECSCCCHHHH----HHHHHCC--SCEEEE
T ss_pred CChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHH----HHHHhCC--CCEEEE
Confidence 123445677888889999999999887654332 3333345 567765
No 40
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=66.45 E-value=9 Score=39.67 Aligned_cols=50 Identities=18% Similarity=0.259 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-. . .+++|.||-|-
T Consensus 74 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~---~--~~p~i~IPTT~ 123 (358)
T 3jzd_A 74 PIESARDATARAREAGADCAVAVGGGSTTGLGKAIALE---T--GMPIVAIPTTY 123 (358)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS
T ss_pred CHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc
Confidence 46788999999999999999999998888888888753 2 46899999874
No 41
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=66.17 E-value=12 Score=38.66 Aligned_cols=50 Identities=24% Similarity=0.227 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+..+++++.+++.+.|.+|-|||--+++.|..++-. . .+++|.||-|-
T Consensus 72 ~~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~p~i~IPTTa 121 (353)
T 3hl0_A 72 PVEVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR---T--DAAQIVIPTTY 121 (353)
T ss_dssp BHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---H--CCEEEEEECSS
T ss_pred cHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc
Confidence 45788999999999999999999998888888877753 2 47899999887
No 42
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=66.12 E-value=46 Score=32.66 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=64.3
Q ss_pred CCccEEEEEecC--CCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCC
Q 008310 88 NKSLKIGVVLSG--GQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRD 165 (570)
Q Consensus 88 ~~~~~IGIv~sG--G~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~ 165 (570)
.+..+||+++.. -..|-...++.|+-++++.. |.++.-+. ..
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~------------------------~~---------- 102 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--GRQLLLAD------------------------GK---------- 102 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--TCEEEEEE------------------------CT----------
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--CCEEEEEe------------------------CC----------
Confidence 445799999988 77788889999999887653 33322110 00
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 166 KIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 166 k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
.+.+...+.++.+...++||+|+.+.+.+... +.+.+.+.+ ++||. +|.+...... .+++.|-
T Consensus 103 --~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~--iPvV~----~~~~~~~~~~-~~V~~D~ 165 (338)
T 3dbi_A 103 --HSAEEERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAHS--QPIMV----LNRRLRKNSS-HSVWCDH 165 (338)
T ss_dssp --TSHHHHHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHCS--SCEEE----ESSCCSSSGG-GEECBCH
T ss_pred --CChHHHHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcCC--CCEEE----EcCCCCCCCC-CEEEECh
Confidence 12344556778888999999999987765432 333333334 45664 4555544322 3555553
No 43
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=65.74 E-value=51 Score=31.57 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=61.2
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
.+..+|||++..-..|-...++.|+-++++.. +.++.- . +..
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~-------------~-----------~~~------------ 55 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMY--KYNIIL-------------S-----------NSD------------ 55 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEE-------------E-----------ECT------------
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHc--CCEEEE-------------E-----------eCC------------
Confidence 44579999998877788888999998887542 222210 0 000
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
.+.+...+.++.+...++||+|+.+.+.+... + +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 56 ~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~-~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 117 (289)
T 2fep_A 56 QNMEKELHLLNTMLGKQVDGIVFMGGNITDEH---V-AEFKRSP--VPIVLA----ASVEEQEET-PSVAIDY 117 (289)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCHHH---H-HHHHHSS--SCEEEE----SCCCTTCCS-CEEECCH
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCHHH---H-HHHHhcC--CCEEEE----ccccCCCCC-CEEEECc
Confidence 12344566778888899999999987644222 2 2233344 567765 333332222 3566653
No 44
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=65.33 E-value=11 Score=38.76 Aligned_cols=52 Identities=12% Similarity=0.220 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~I---d~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+.++++.+.+++.++ |.+|-+||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 67 ~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~~-r--gip~i~IPTTl 121 (343)
T 3clh_A 67 NFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYF-R--GIDFINIPTTL 121 (343)
T ss_dssp SHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBT-T--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHhc-c--CCCEEEeCCch
Confidence 56889999999999999 99999999888888777765432 3 47899999885
No 45
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=65.22 E-value=41 Score=31.66 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=61.4
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIET 169 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~ 169 (570)
..+|||++..-..|-...++.|+-+++++. +.++. +..+. .+
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~ 44 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA--GYQLL---------------------------------LGYSD---YS 44 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT--SCEEC---------------------------------CEECT---TC
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC--CCEEE---------------------------------EEcCC---CC
Confidence 368999998877888888999998887642 22211 00010 12
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
++...+.++.+...++||+|+.+.+.+...... +.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 45 ~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~----l~~~~--iPvV~~----~~~~~~~~~-~~V~~d~ 104 (275)
T 3d8u_A 45 IEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQL----LEASN--TPVLEI----AELSSKASY-LNIGVDH 104 (275)
T ss_dssp HHHHHHHHHHHHTSCCCCEEEESSCCCHHHHHH----HHHHT--CCEEEE----SSSCSSSSS-EEECBCH
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHH----HHhCC--CCEEEE----eeccCCCCC-CEEEECh
Confidence 344556778888899999999987654322222 33334 567765 444332222 3677664
No 46
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=64.28 E-value=75 Score=30.04 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=65.9
Q ss_pred CCccEEEEEecC-----CCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceeccc
Q 008310 88 NKSLKIGVVLSG-----GQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCS 162 (570)
Q Consensus 88 ~~~~~IGIv~sG-----G~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs 162 (570)
.+..+|||++.. -..|-...++.|+.+++++. +.++.-+ +..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~------------------------~~~------- 52 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--GYALYMS------------------------TGE------- 52 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--TCEEEEC------------------------CCC-------
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--CCEEEEE------------------------eCC-------
Confidence 345799999998 78899999999999887653 3332210 000
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 163 GRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 163 ~R~k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
.+.+.....++.+...++||+|+.+.+.+.... +.+.+.+ ++||.+ |++......-.++++|-
T Consensus 53 -----~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~----~~l~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 115 (292)
T 3k4h_A 53 -----TEEEIFNGVVKMVQGRQIGGIILLYSRENDRII----QYLHEQN--FPFVLI----GKPYDRKDEITYVDNDN 115 (292)
T ss_dssp -----SHHHHHHHHHHHHHTTCCCEEEESCCBTTCHHH----HHHHHTT--CCEEEE----SCCSSCTTTSCEEECCH
T ss_pred -----CCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHH----HHHHHCC--CCEEEE----CCCCCCCCCCCEEEECc
Confidence 123445677888899999999999987653322 3333445 557654 55554332123566554
No 47
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=64.09 E-value=11 Score=38.86 Aligned_cols=52 Identities=23% Similarity=0.399 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~I---d~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+.++++.+.+++.++ |.+|-+||--.++.|..+|-.+ .+ .+++|.||-|.
T Consensus 72 ~~~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~-~r--gip~i~IPTT~ 126 (354)
T 1xah_A 72 TFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATL-LR--GVHFIQVPTTI 126 (354)
T ss_dssp SHHHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHHB-TT--CCEEEEEECST
T ss_pred CHHHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHHh-cc--CCCEEEECCcc
Confidence 56889999999999999 9999999988888887777543 23 47899999776
No 48
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=64.06 E-value=15 Score=38.18 Aligned_cols=55 Identities=9% Similarity=0.136 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhc-------------CCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRS-------------KDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~-------------~g~~i~VIgVPKTI 223 (570)
+.+.++++++.+++.+.|.+|-|||--.++.|..+|-.... ..-.+++|.||-|-
T Consensus 77 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~ 144 (387)
T 3bfj_A 77 KDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTA 144 (387)
T ss_dssp BHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECST
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCC
Confidence 56889999999999999999999998888888888764211 01257899999776
No 49
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=63.58 E-value=48 Score=31.69 Aligned_cols=103 Identities=16% Similarity=0.053 Sum_probs=59.5
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+..+|||++..-..|=...++.|+-+++++. +.++.-+ +..+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~------------------------~~~~------------ 48 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAV--HRHVVVA------------------------TGCG------------ 48 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHT--TCEEEEE------------------------CCCS------------
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--CCEEEEE------------------------eCCC------------
Confidence 4579999998777788888899998887642 3332100 0000
Q ss_pred ChHHHHH---HHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 169 TPEQFKQ---AEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 169 ~~e~~~~---~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
+.+.... .++.+...++||+|+.+.+.+..... .+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 49 ~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~----~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 112 (290)
T 2rgy_A 49 ESTPREQALEAVRFLIGRDCDGVVVISHDLHDEDLD----ELHRMH--PKMVFL----NRAFDALPD-ASFCPDH 112 (290)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHH----HHHHHC--SSEEEE----SSCCTTSGG-GEECCCH
T ss_pred chhhhhhHHHHHHHHHhcCccEEEEecCCCCHHHHH----HHhhcC--CCEEEE----ccccCCCCC-CEEEeCc
Confidence 1122234 67778889999999998776532222 233334 557765 443332221 3566654
No 50
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=63.17 E-value=4.1 Score=42.69 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=66.7
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCce-------ec
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFD-------ML 160 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~-------~l 160 (570)
..+++||||.= -..|.....+..+++.|... +.+||- +.++ .+.+. +...-.+. ..
T Consensus 36 ~~~k~I~iv~K-~~~~~~~~~~~~l~~~L~~~--~~~V~v---------e~~~----~~~~~-~~~~~~~~~~~~~~~~~ 98 (365)
T 3pfn_A 36 KSPKSVLVIKK-MRDASLLQPFKELCTHLMEE--NMIVYV---------EKKV----LEDPA-IASDESFGAVKKKFCTF 98 (365)
T ss_dssp SCCCEEEEEEC-TTCGGGHHHHHHHHHHHHHT--SCEEEE---------EHHH----HHSHH-HHHCSTTHHHHHHCEEE
T ss_pred CCCCEEEEEec-CCCHHHHHHHHHHHHHHHHC--CCEEEE---------ehHH----hhhhc-ccccccccccccccccc
Confidence 34789999975 35678888899999998763 455542 1110 00000 00000000 00
Q ss_pred ccCCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 161 CSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 161 Gs~R~k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
......+ ..+.|.+|++|||||+-.|+.+. . +..++|+||=. -++||-|
T Consensus 99 ~~~~~~~--------------~~~~DlvI~lGGDGT~L~aa~~~---~--~~~~PvlGiN~------------G~LGFLt 147 (365)
T 3pfn_A 99 REDYDDI--------------SNQIDFIICLGGDGTLLYASSLF---Q--GSVPPVMAFHL------------GSLGFLT 147 (365)
T ss_dssp CTTTCCC--------------TTTCSEEEEESSTTHHHHHHHHC---S--SSCCCEEEEES------------SSCTTTC
T ss_pred ccChhhc--------------ccCCCEEEEEcChHHHHHHHHHh---c--cCCCCEEEEcC------------CCCccce
Confidence 0011111 24789999999999998887653 2 44578999852 1788866
Q ss_pred HHH--HHHHHHHHHH
Q 008310 241 ACK--TFSEVIGNVM 253 (570)
Q Consensus 241 A~k--~~se~I~ni~ 253 (570)
-.. -+.+.+..+.
T Consensus 148 ~~~~~~~~~~l~~vl 162 (365)
T 3pfn_A 148 PFSFENFQSQVTQVI 162 (365)
T ss_dssp CEESTTHHHHHHHHH
T ss_pred eecHHHHHHHHHHHH
Confidence 432 3344444443
No 51
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=63.15 E-value=27 Score=33.44 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=59.6
Q ss_pred CCccEEEEEecCCCC--chhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCC
Q 008310 88 NKSLKIGVVLSGGQA--PGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRD 165 (570)
Q Consensus 88 ~~~~~IGIv~sGG~a--PG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~ 165 (570)
.+..+|||++..-.- |=...++.|+-++++. .|.++.-+. ...
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~--~g~~~~~~~------------------------~~~--------- 50 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLST--TQYHLVVTP------------------------HIH--------- 50 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT--SSCEEEECC------------------------BSS---------
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHH--cCCEEEEec------------------------CCc---------
Confidence 345799999987654 8888889998887643 233322110 001
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 166 KIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 166 k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
+++....+.+.+...++||+|+.+.+.+.... +.+.+.+ ++||. +|.+.....+ .++++|-
T Consensus 51 ---~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~----~~l~~~~--iPvV~----i~~~~~~~~~-~~V~~D~ 111 (288)
T 3gv0_A 51 ---AKDSMVPIRYILETGSADGVIISKIEPNDPRV----RFMTERN--MPFVT----HGRSDMGIEH-AFHDFDN 111 (288)
T ss_dssp ---GGGTTHHHHHHHHHTCCSEEEEESCCTTCHHH----HHHHHTT--CCEEE----ESCCCSSCCC-EEEEECH
T ss_pred ---chhHHHHHHHHHHcCCccEEEEecCCCCcHHH----HHHhhCC--CCEEE----ECCcCCCCCC-cEEEeCc
Confidence 01122445566778999999999876543332 3333345 55764 4555543332 3566554
No 52
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=62.72 E-value=51 Score=32.52 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=57.3
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
.+..+||+++..-.-|=...++.|+-+.++. .|.+++-+. ...
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--~g~~~~~~~------------------------~~~----------- 108 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLED--TELQPVVGV------------------------TDY----------- 108 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTS--SSSEEEEEE------------------------CTT-----------
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHH--CCCEEEEEe------------------------CCC-----------
Confidence 3457999999888888888999999887643 244432110 000
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
+++...+.++.+...++||+|+.+-+.+.... +.+.+.+ ++||.+
T Consensus 109 -~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~~--iPvV~i 153 (344)
T 3kjx_A 109 -LPEKEEKVLYEMLSWRPSGVIIAGLEHSEAAR----AMLDAAG--IPVVEI 153 (344)
T ss_dssp -CHHHHHHHHHHHHTTCCSEEEEECSCCCHHHH----HHHHHCS--SCEEEE
T ss_pred -CHHHHHHHHHHHHhCCCCEEEEECCCCCHHHH----HHHHhCC--CCEEEE
Confidence 23455677788889999999999877554222 3334445 456655
No 53
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=62.70 E-value=14 Score=38.63 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhc-------------CCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRS-------------KDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~-------------~g~~i~VIgVPKTI 223 (570)
+.+.++++++.+++.+.|.+|-|||--.++.|..++-.+.. ..-.+++|.||-|-
T Consensus 86 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTa 153 (407)
T 1vlj_A 86 VLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTIS 153 (407)
T ss_dssp BHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCC
Confidence 56889999999999999999999998888888888765311 01357899999764
No 54
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=62.57 E-value=10 Score=39.28 Aligned_cols=58 Identities=21% Similarity=0.184 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcC-------------CCCceEEEeeccccCC
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSK-------------DMKTRVIGCPKTIDGD 226 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~-------------g~~i~VIgVPKTIDND 226 (570)
+.+.++++.+.+++.+.|.+|-|||--.++.|..++-.+... .-.+++|.||-|--.+
T Consensus 83 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtg 153 (371)
T 1o2d_A 83 SFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTG 153 (371)
T ss_dssp BHHHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchh
Confidence 568899999999999999999999998888888887654420 0357899999775443
No 55
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=62.19 E-value=3.1 Score=41.01 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=25.3
Q ss_pred cCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEee
Q 008310 183 LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 220 (570)
Q Consensus 183 ~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 220 (570)
.+.|.+|++|||||+-.|+.. +. + +++++||+
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~---~~--~-~~PilGIn 71 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKK---AA--D-GTPMVGFK 71 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTT---BC--T-TCEEEEEE
T ss_pred CCCCEEEEEeCcHHHHHHHHH---hC--C-CCCEEEEE
Confidence 368999999999998887643 22 2 67899998
No 56
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=61.82 E-value=1.1e+02 Score=29.11 Aligned_cols=71 Identities=15% Similarity=0.053 Sum_probs=50.5
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIET 169 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~ 169 (570)
..+|||++..-..|-...++.|+-++++.. |.++. + ..+. ...+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~--------------------------------~-~~~~-~~~~ 46 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--KVDLQ--------------------------------I-LAPP-GAND 46 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--TCEEE--------------------------------E-ECCS-SSCC
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--CcEEE--------------------------------E-ECCC-CcCC
Confidence 469999999988999999999999987653 22221 0 0000 0124
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchh
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDS 196 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS 196 (570)
.+...+.++.+...++||+|+.+.+..
T Consensus 47 ~~~~~~~i~~l~~~~vdgiii~~~~~~ 73 (297)
T 3rot_A 47 VPKQVQFIESALATYPSGIATTIPSDT 73 (297)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 566677888888999999999887655
No 57
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=60.32 E-value=3.7 Score=43.36 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=26.1
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEE
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLY 126 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~ 126 (570)
.+++|+|+.==+ .+.....+..+.+.|....++.+|+
T Consensus 40 ~~k~V~II~n~~-~~~~~~~~~~l~~~L~~~~~gi~V~ 76 (388)
T 3afo_A 40 PLQNVYITKKPW-TPSTREAMVEFITHLHESYPEVNVI 76 (388)
T ss_dssp CCCEEEEEECTT-CHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCcEEEEEEeCC-CHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 468999998744 3666677778888887765566654
No 58
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=59.76 E-value=16 Score=38.23 Aligned_cols=52 Identities=13% Similarity=0.265 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHcC--C---CEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLD--L---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~--I---d~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+.++++.+.+.+.+ + |.+|-+||--.++.|...|-.+. +| +++|.||-|.
T Consensus 85 ~~~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~-rg--ip~i~IPTTl 141 (393)
T 1sg6_A 85 SRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTYM-RG--VRYVQVPTTL 141 (393)
T ss_dssp SHHHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHGG-GC--CEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHhc-CC--CCEEEECCch
Confidence 5688999999999999 9 99999999888887777765432 34 6899999764
No 59
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=59.04 E-value=97 Score=29.18 Aligned_cols=88 Identities=15% Similarity=0.216 Sum_probs=52.5
Q ss_pred CCccEEEEEecC--CCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCC
Q 008310 88 NKSLKIGVVLSG--GQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRD 165 (570)
Q Consensus 88 ~~~~~IGIv~sG--G~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~ 165 (570)
.+..+||+++.. -..|-...++.|+-++++.. |.++. +....
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~- 60 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--GRQLL---------------------------------LADGK- 60 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--TCEEE---------------------------------EECCT-
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--CCEEE---------------------------------EEeCC-
Confidence 345799999987 67788888999998887542 22211 00000
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhc-CCCCceEEEe
Q 008310 166 KIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRS-KDMKTRVIGC 219 (570)
Q Consensus 166 k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~-~g~~i~VIgV 219 (570)
.+++.....++.+...++||+|+.+.+.+... + +.+.+ .+ ++||.+
T Consensus 61 --~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~---~-~~l~~~~~--iPvV~~ 107 (296)
T 3brq_A 61 --HSAEEERQAIQYLLDLRCDAIMIYPRFLSVDE---I-DDIIDAHS--QPIMVL 107 (296)
T ss_dssp --TSHHHHHHHHHHHHHTTCSEEEEECSSSCHHH---H-HHHHHTCS--SCEEEE
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEecCCCChHH---H-HHHHhcCC--CCEEEE
Confidence 12344556677788899999999988654222 2 23333 34 557665
No 60
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=59.03 E-value=95 Score=30.30 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=47.2
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+..+||+++..-..|-...++.|+-++++.. |.++. +..+. .
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~ 103 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMY--KYNMI---------------------------------LANSD---N 103 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---T
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--CCEEE---------------------------------EEECC---C
Confidence 4579999998777788888899998887542 22221 00000 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchh
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDS 196 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS 196 (570)
+++.....++.+...++||+|+.+.+.+
T Consensus 104 ~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 131 (332)
T 2o20_A 104 DVEKEEKVLETFLSKQVDGIVYMGSSLD 131 (332)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECSSCCC
T ss_pred ChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 2344556677888899999999987544
No 61
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=58.58 E-value=1.2e+02 Score=28.25 Aligned_cols=106 Identities=19% Similarity=0.139 Sum_probs=62.7
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCCh
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETP 170 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~ 170 (570)
.+|||++..-..|-...++.|+-+++++. |.++.-+ ..... .+.
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~---------------------------------~~~~~-~~~ 44 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--GVTLLHR---------------------------------STKDD-GDI 44 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--TCEEEEC---------------------------------CCSST-TCH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEEE---------------------------------CCCCC-CCH
Confidence 38999999999999999999999987653 2222210 00000 134
Q ss_pred HHHHHHHHHHHHcC-CCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 171 EQFKQAEETVKKLD-LDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 171 e~~~~~~~~l~k~~-Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
+.....++.+...+ +||+|+.+-+..... ..+ +.+.+.+ ++||.+ |.+........++++|-
T Consensus 45 ~~~~~~i~~l~~~~~vdgii~~~~~~~~~~-~~~-~~~~~~~--ipvV~~----~~~~~~~~~~~~V~~d~ 107 (276)
T 3ksm_A 45 AGQIQILSYHLSQAPPDALILAPNSAEDLT-PSV-AQYRARN--IPVLVV----DSDLAGDAHQGLVATDN 107 (276)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCSSTTTTH-HHH-HHHHHTT--CCEEEE----SSCCSSSCSSEEEECCH
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCHHHHH-HHH-HHHHHCC--CcEEEE----ecCCCCCCcceEEccCH
Confidence 55566777788888 999999986532211 111 2333344 567765 44444333223555553
No 62
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=58.14 E-value=17 Score=35.08 Aligned_cols=102 Identities=16% Similarity=0.141 Sum_probs=60.1
Q ss_pred CccEEEEEec----CCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCC
Q 008310 89 KSLKIGVVLS----GGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGR 164 (570)
Q Consensus 89 ~~~~IGIv~s----GG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R 164 (570)
+..+|||++. .-..|=...++.|+-+++++. |..+.-+. + .
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~--------------------------------~-~ 49 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR--GLDLLLIP--------------------------------D-E 49 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT--TCEEEEEE--------------------------------E-C
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHC--CCEEEEEe--------------------------------C-C
Confidence 4579999997 556677788888888887653 44432111 0 0
Q ss_pred CCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 165 DKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 165 ~k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
. .+......+.+...++||+|+.+.+.+.... +.+.+.+ ++||. +|.+.....+ .++++|-
T Consensus 50 ~----~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~~--iPvV~----~~~~~~~~~~-~~V~~D~ 110 (294)
T 3qk7_A 50 P----GEKYQSLIHLVETRRVDALIVAHTQPEDFRL----QYLQKQN--FPFLA----LGRSHLPKPY-AWFDFDN 110 (294)
T ss_dssp T----TCCCHHHHHHHHHTCCSEEEECSCCSSCHHH----HHHHHTT--CCEEE----ESCCCCSSCC-EEEEECH
T ss_pred C----hhhHHHHHHHHHcCCCCEEEEeCCCCChHHH----HHHHhCC--CCEEE----ECCCCCCCCC-CEEEcCh
Confidence 0 0112456777888999999999987644222 2333345 45664 3555443332 3566554
No 63
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=57.05 E-value=33 Score=32.80 Aligned_cols=99 Identities=11% Similarity=0.103 Sum_probs=52.3
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIET 169 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~ 169 (570)
++||+|++||.+. ....+++++....-+.++.++.--.. +..+..+...=|-..+--.+.++.+
T Consensus 3 m~ki~vl~sG~g~-----~~~~~l~~l~~~~l~~~I~~Vit~~~-----------~~~v~~~A~~~gIp~~~~~~~~~~~ 66 (212)
T 3av3_A 3 MKRLAVFASGSGT-----NFQAIVDAAKRGDLPARVALLVCDRP-----------GAKVIERAARENVPAFVFSPKDYPS 66 (212)
T ss_dssp CEEEEEECCSSCH-----HHHHHHHHHHTTCCCEEEEEEEESST-----------TCHHHHHHHHTTCCEEECCGGGSSS
T ss_pred CcEEEEEEECCcH-----HHHHHHHHHHhCCCCCeEEEEEeCCC-----------CcHHHHHHHHcCCCEEEeCcccccc
Confidence 5799999999853 23345555443221456665542110 0112222222243333222333445
Q ss_pred hHHHH-HHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 008310 170 PEQFK-QAEETVKKLDLDGLVVIGGDDSNTNACLLAE 205 (570)
Q Consensus 170 ~e~~~-~~~~~l~k~~Id~LviIGGddS~t~A~~Lae 205 (570)
.+.++ ...+.+++++.|.+|+.| .+-.-....|..
T Consensus 67 ~~~~~~~~~~~l~~~~~Dliv~a~-y~~il~~~~l~~ 102 (212)
T 3av3_A 67 KAAFESEILRELKGRQIDWIALAG-YMRLIGPTLLSA 102 (212)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEESS-CCSCCCHHHHHH
T ss_pred hhhhHHHHHHHHHhcCCCEEEEch-hhhhCCHHHHhh
Confidence 55554 568889999999777764 555444455543
No 64
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=56.73 E-value=90 Score=29.62 Aligned_cols=102 Identities=17% Similarity=0.138 Sum_probs=60.6
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+..+|||++..-..|-...++.|+-++++.. +.++.- . +.. .
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~-------------~-----------~~~------------~ 48 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKN--GYRILL-------------C-----------NTE------------S 48 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEE-------------E-----------ECT------------T
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHc--CCEEEE-------------E-----------eCC------------C
Confidence 4579999998777788888889988887542 222210 0 000 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
+++.....++.+...++||+|+.+.+.+.. .+ +.+. .+ ++||.+ |.+.....+ .++++|-
T Consensus 49 ~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~---~~-~~l~-~~--iPvV~~----~~~~~~~~~-~~V~~D~ 108 (285)
T 3c3k_A 49 DLARSRSCLTLLSGKMVDGVITMDALSELP---EL-QNII-GA--FPWVQC----AEYDPLSTV-SSVSIDD 108 (285)
T ss_dssp CHHHHHHHTHHHHTTCCSEEEECCCGGGHH---HH-HHHH-TT--SSEEEE----SSCCTTSSS-CEEECCH
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCCChH---HH-HHHh-cC--CCEEEE----ccccCCCCC-CEEEECh
Confidence 234445667778889999999998765432 22 2333 34 567765 444332222 3566654
No 65
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=55.62 E-value=9.9 Score=38.92 Aligned_cols=52 Identities=21% Similarity=0.306 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCC
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 226 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 226 (570)
+.+..+++ +.+++.+.|.+|-|||--.++.|..+| +.+ .+++|.||-|.-.|
T Consensus 74 ~~~~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~~----~~p~i~IPTT~~tg 125 (354)
T 3ce9_A 74 DFDEIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FLR----KLPFISVPTSTSND 125 (354)
T ss_dssp BHHHHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HHH----TCCEEEEESCCSSG
T ss_pred CHHHHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hhc----CCCEEEecCcccCC
Confidence 45677888 888889999999999988888888887 443 46899999876543
No 66
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=55.35 E-value=19 Score=37.04 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~I---d~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+.++++.+.+++.++ |.+|-+||--.++.|...|-.+. + .+++|.||-|.
T Consensus 66 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~~~-r--gip~i~IPTTl 120 (348)
T 1ujn_A 66 SLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATYL-R--GVAYLAFPTTT 120 (348)
T ss_dssp SHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHBT-T--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHhc-c--CCCEEEecCcH
Confidence 55788999999999998 89999999888888877775332 2 47899999764
No 67
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=55.30 E-value=19 Score=37.95 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~I---d~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+.++++.+.+.+.++ |.+|-+||--.++.|..+|-.+. + .+++|.||-|.
T Consensus 105 t~~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~~-r--gip~I~IPTTl 159 (390)
T 3okf_A 105 TLETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQ-R--GVDFIQIPTTL 159 (390)
T ss_dssp BHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBT-T--CCEEEEEECSH
T ss_pred hHHHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHHhc-C--CCCEEEeCCCC
Confidence 56789999999999999 69999999888888877764332 3 47899999886
No 68
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=53.68 E-value=39 Score=36.09 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHH
Q 008310 169 TPEQFKQAEETVKKL---DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTF 245 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~---~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~ 245 (570)
+++++.++.+.++++ +.||+||.=|.|||.-.+.+-.++.+ +.+.+||-.=.=.-- ..++.|-..|.+
T Consensus 150 tp~~w~~La~~I~~~~~~~~DG~VItHGTDTMeeTA~~Lsl~l~-~~~KPVVlTGAqrP~--------~~~~sDg~~NL~ 220 (438)
T 1zq1_A 150 KPKHWVKIAHEVAKALNSGDYGVVVAHGTDTMGYTAAALSFMLR-NLGKPVVLVGAQRSS--------DRPSSDAAMNLI 220 (438)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEEECCSSSHHHHHHHHHHHEE-SCCSCEEEECCSSCT--------TSTTCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCeEEEecCchhHHHHHHHHHHHHh-CCCCCEEEeCCCCCC--------CCCCcchHHHHH
Confidence 678887777777665 89999999999999775555455442 333455543221111 245666666666
Q ss_pred HHH
Q 008310 246 SEV 248 (570)
Q Consensus 246 se~ 248 (570)
..+
T Consensus 221 ~Av 223 (438)
T 1zq1_A 221 CSV 223 (438)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 69
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=52.67 E-value=22 Score=37.07 Aligned_cols=52 Identities=19% Similarity=0.328 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~I---d~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+.++++.+.+.+.++ |.+|-+||--.++.|..+|-.+. +| +++|.||-|.
T Consensus 85 t~~~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~~-rg--ip~i~IPTTl 139 (368)
T 3qbe_A 85 DLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATWL-RG--VSIVHLPTTL 139 (368)
T ss_dssp BHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHGG-GC--CEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHhc-cC--CcEEEECCCC
Confidence 45788999999999875 99999999888888887775443 34 6899999875
No 70
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=52.65 E-value=38 Score=32.38 Aligned_cols=94 Identities=12% Similarity=0.198 Sum_probs=51.0
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEe---CCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFR---GGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~---~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
+||||+.||.-+ .+..++++++....+.+|.++. ....|+ .+...-|-..+--...++
T Consensus 1 ~riaVl~SG~Gs-----~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~--------------~~A~~~gIp~~~~~~~~~ 61 (209)
T 1meo_A 1 ARVAVLISGTGS-----NLQALIDSTREPNSSAQIDIVISNKAAVAGL--------------DKAERAGIPTRVINHKLY 61 (209)
T ss_dssp CEEEEEESSSCT-----THHHHHHHHHSTTCSCEEEEEEESSTTCHHH--------------HHHHHTTCCEEECCGGGS
T ss_pred CeEEEEEECCch-----HHHHHHHHHhcCCCCcEEEEEEeCCCChHHH--------------HHHHHcCCCEEEECcccc
Confidence 489999999763 3555666554333356777765 222231 111122322221122233
Q ss_pred CChHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHHH
Q 008310 168 ETPEQF-KQAEETVKKLDLDGLVVIGGDDSNTNACLLA 204 (570)
Q Consensus 168 ~~~e~~-~~~~~~l~k~~Id~LviIGGddS~t~A~~La 204 (570)
.+.+.+ +.+.+.+++++.|.+|+.| .+-.-....|.
T Consensus 62 ~~r~~~~~~~~~~l~~~~~Dliv~a~-y~~il~~~~l~ 98 (209)
T 1meo_A 62 KNRVEFDSAIDLVLEEFSIDIVCLAG-FMRILSGPFVQ 98 (209)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEES-CCSCCCHHHHH
T ss_pred CchhhhhHHHHHHHHhcCCCEEEEcc-hhhhCCHHHHh
Confidence 455555 4578889999999887776 44333334443
No 71
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=50.14 E-value=99 Score=30.30 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=48.4
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
.+..+|||++..-..|-...++.|+-++++.. |.++.- .+..
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~------------------------~~~~------------ 97 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--GYTLIL------------------------GNAW------------ 97 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEEE------------------------EECT------------
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEE------------------------EeCC------------
Confidence 34569999998777888888999998887642 333210 0010
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchh
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDS 196 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS 196 (570)
.+.+.....++.+...++||+|+.+.+.+
T Consensus 98 ~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 126 (340)
T 1qpz_A 98 NNLEKQRAYLSMMAQKRVDGLLVMCSEYP 126 (340)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCC
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 13345566778888899999999987654
No 72
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=49.70 E-value=62 Score=31.04 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=53.0
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIET 169 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~ 169 (570)
++||+|+.||+ | +| ...++++.+.-.-..+|.++.- ++- +..+..+...=|-...--.+..+.+
T Consensus 2 m~riavl~Sg~---G-sn-l~ali~~~~~~~l~~eI~~Vis-------n~~----~a~v~~~A~~~gIp~~~~~~~~~~~ 65 (211)
T 3p9x_A 2 MKRVAIFASGS---G-TN-AEAIIQSQKAGQLPCEVALLIT-------DKP----GAKVVERVKVHEIPVCALDPKTYPS 65 (211)
T ss_dssp -CEEEEECCTT---C-HH-HHHHHHHHHTTCCSSEEEEEEE-------SCS----SSHHHHHHHTTTCCEEECCGGGSSS
T ss_pred CCEEEEEEeCC---c-hH-HHHHHHHHHcCCCCcEEEEEEE-------CCC----CcHHHHHHHHcCCCEEEeChhhcCc
Confidence 57999999995 3 33 6777776543222346665542 110 0112222222232222112223444
Q ss_pred hHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH
Q 008310 170 PEQF-KQAEETVKKLDLDGLVVIGGDDSNTNACLLAEN 206 (570)
Q Consensus 170 ~e~~-~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~ 206 (570)
.+.+ +.+++.+++++.|.+|+.| .+-.-....|..+
T Consensus 66 r~~~d~~~~~~l~~~~~Dliv~ag-y~~Il~~~~l~~~ 102 (211)
T 3p9x_A 66 KEAYEIEVVQQLKEKQIDFVVLAG-YMRLVGPTLLGAY 102 (211)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEESS-CCSCCCHHHHHHH
T ss_pred hhhhHHHHHHHHHhcCCCEEEEeC-chhhcCHHHHhhc
Confidence 5555 4567899999999888775 5544445555443
No 73
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=47.75 E-value=85 Score=30.33 Aligned_cols=102 Identities=17% Similarity=0.227 Sum_probs=54.5
Q ss_pred CCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCC
Q 008310 87 ENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDK 166 (570)
Q Consensus 87 ~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k 166 (570)
...++||+|+.||.+. ....+++++.....+.++.++.--.. +..+..+...=|-..+--...+
T Consensus 19 ~~~~~rI~~l~SG~g~-----~~~~~l~~l~~~~~~~~I~~Vvt~~~-----------~~~~~~~A~~~gIp~~~~~~~~ 82 (229)
T 3auf_A 19 QGHMIRIGVLISGSGT-----NLQAILDGCREGRIPGRVAVVISDRA-----------DAYGLERARRAGVDALHMDPAA 82 (229)
T ss_dssp BTTCEEEEEEESSCCH-----HHHHHHHHHHTTSSSEEEEEEEESST-----------TCHHHHHHHHTTCEEEECCGGG
T ss_pred cCCCcEEEEEEeCCcH-----HHHHHHHHHHhCCCCCeEEEEEcCCC-----------chHHHHHHHHcCCCEEEECccc
Confidence 3456899999999852 24455555543222456666642110 0111222222243333222333
Q ss_pred CCChHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 008310 167 IETPEQF-KQAEETVKKLDLDGLVVIGGDDSNTNACLLAE 205 (570)
Q Consensus 167 ~~~~e~~-~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae 205 (570)
+.+.+.+ +.+++.+++++.|.+|+.| .+-.-....|..
T Consensus 83 ~~~r~~~~~~~~~~l~~~~~Dliv~ag-y~~IL~~~~l~~ 121 (229)
T 3auf_A 83 YPSRTAFDAALAERLQAYGVDLVCLAG-YMRLVRGPMLTA 121 (229)
T ss_dssp SSSHHHHHHHHHHHHHHTTCSEEEESS-CCSCCCHHHHHH
T ss_pred ccchhhccHHHHHHHHhcCCCEEEEcC-hhHhCCHHHHhh
Confidence 4454555 4568889999999777765 554444455543
No 74
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=47.69 E-value=28 Score=35.96 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHHcCC---CEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDL---DGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~I---d~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+.+.+.++.+.+.+.++ |.+|-+||--.++.|...|-.+. + .+++|.||-|.
T Consensus 76 ~~~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~-r--gip~i~IPTTl 130 (368)
T 2gru_A 76 TLSTVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMMF-R--GIALIHVPTTF 130 (368)
T ss_dssp SHHHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHBT-T--CCEEEEEECSH
T ss_pred CHHHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHhc-C--CCCEEEECCch
Confidence 56788999999999995 89999999888887777765332 3 47899999874
No 75
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=47.67 E-value=91 Score=29.38 Aligned_cols=31 Identities=23% Similarity=0.130 Sum_probs=25.7
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHH
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQE 118 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~ 118 (570)
.+..+|||++..-..|-...++.|+-++++.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~ 36 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLAL 36 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHT
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHH
Confidence 3457999999888888899999999988754
No 76
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=47.28 E-value=65 Score=30.57 Aligned_cols=99 Identities=18% Similarity=0.232 Sum_probs=62.3
Q ss_pred CCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCE-EEEEeCCcccccCCCEEECChhhhccccccCCceecccCCC
Q 008310 87 ENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSK-LYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRD 165 (570)
Q Consensus 87 ~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~-v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~ 165 (570)
..+..+|||++..-..|-...++.|+-++++.. |.+ +.-+ .+.
T Consensus 7 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~---------------------------------~~~- 50 (277)
T 3hs3_A 7 QKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--GYTALISF---------------------------------STN- 50 (277)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEEEE---------------------------------CSS-
T ss_pred cCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--CCCEEEEE---------------------------------eCC-
Confidence 345679999999888888899999998887653 444 2210 000
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCC-CCCCCCCCCCChhh
Q 008310 166 KIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD-LKCKDVPISFGFDT 240 (570)
Q Consensus 166 k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND-L~~~~ie~s~GFdT 240 (570)
.+.+...+.++.+...++||+|+.+ . .+ +.+.+. +++||. +|.+ +....+ ++++|-
T Consensus 51 --~~~~~~~~~~~~l~~~~vdgiIi~~--~------~~-~~~~~~--~iPvV~----~~~~~~~~~~~--~V~~D~ 107 (277)
T 3hs3_A 51 --SDVKKYQNAIINFENNNVDGIITSA--F------TI-PPNFHL--NTPLVM----YDSANINDDIV--RIVSNN 107 (277)
T ss_dssp --CCHHHHHHHHHHHHHTTCSEEEEEC--C------CC-CTTCCC--SSCEEE----ESCCCCCSSSE--EEEECH
T ss_pred --CChHHHHHHHHHHHhCCCCEEEEcc--h------HH-HHHHhC--CCCEEE----EcccccCCCCE--EEEECh
Confidence 1234456678888999999999998 1 11 222223 456764 4666 554443 555553
No 77
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=46.94 E-value=1.5e+02 Score=28.35 Aligned_cols=104 Identities=16% Similarity=0.258 Sum_probs=62.8
Q ss_pred CCccEEEEEecC-----CCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceeccc
Q 008310 88 NKSLKIGVVLSG-----GQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCS 162 (570)
Q Consensus 88 ~~~~~IGIv~sG-----G~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs 162 (570)
.+..+|||++.. -..|-...++.|+-++++.. |.++.-+ +..
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~------------------------~~~------- 66 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--GYSTRMT------------------------VSE------- 66 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--TCEEEEC------------------------CCS-------
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--CCEEEEE------------------------eCC-------
Confidence 445799999988 66777888888988887653 3333210 000
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 163 GRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 163 ~R~k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
.+.+...+.++.+...++||+|+.+.+.+.... +.+.+.+ ++||.+ |++.....+ .+++.|-
T Consensus 67 -----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~----~~l~~~~--iPvV~i----~~~~~~~~~-~~V~~D~ 128 (305)
T 3huu_A 67 -----NSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIE----HLLNEFK--VPYLIV----GKSLNYENI-IHIDNDN 128 (305)
T ss_dssp -----SHHHHHHHHHHHHHTTCCSEEEESSCBTTCHHH----HHHHHTT--CCEEEE----SCCCSSTTC-CEEECCH
T ss_pred -----CChHHHHHHHHHHHhCCCCEEEEeCCcCCcHHH----HHHHHcC--CCEEEE----CCCCcccCC-cEEEeCH
Confidence 123445677888999999999999987653222 3333445 557654 444422111 3555553
No 78
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=46.36 E-value=1.3e+02 Score=28.66 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=57.0
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIET 169 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~ 169 (570)
+.+|||++..-..|=...++.|+-++++.. +.+++ +. .+ .+
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~--------------------------------~~-~~----~~ 42 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--GFEVI--------------------------------KI-AV----PD 42 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--TEEEE--------------------------------EE-EC----CS
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc--CCEEE--------------------------------Ee-CC----CC
Confidence 479999999888898999999999887654 22211 01 11 13
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
.+.....++.+...++||+|+.+-+..... ..+ +.+.+.| ++||.+
T Consensus 43 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-~~~-~~~~~~~--iPvV~~ 88 (306)
T 8abp_A 43 GEKTLNAIDSLAASGAKGFVICTPDPKLGS-AIV-AKARGYD--MKVIAV 88 (306)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCGGGHH-HHH-HHHHHTT--CEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCchhhH-HHH-HHHHHCC--CcEEEe
Confidence 455567788888899999999998765322 112 2333344 567654
No 79
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=45.52 E-value=19 Score=37.22 Aligned_cols=48 Identities=25% Similarity=0.279 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 222 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 222 (570)
+.+.++++.+.+++ +.|.+|-|||--.++.|..+|- ++ .+++|.||-|
T Consensus 80 ~~~~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~-~~----~~p~i~IPTT 127 (376)
T 1kq3_A 80 SDEEIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAY-KL----KKPVVIVPTI 127 (376)
T ss_dssp BHHHHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHH-HT----TCCEEEEESS
T ss_pred CHHHHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHH-hc----CCCEEEecCc
Confidence 34678888888888 9999999999888888888883 32 4789999988
No 80
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=43.97 E-value=21 Score=38.05 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 222 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 222 (570)
.+.++++.+.+++ +.|.+|-|||--.++.|..+| ++ . .+++|.||-|
T Consensus 132 ~~~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA-~~--~--giP~I~IPTT 178 (450)
T 1ta9_A 132 LVELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIA-HS--M--NLPSIICPTT 178 (450)
T ss_dssp HHHHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHH-HH--T--TCCEEEEESS
T ss_pred HHHHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHH-Hh--c--CCCEEEEeCC
Confidence 4667788888888 999999999988888888888 33 2 4789999988
No 81
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=43.81 E-value=1.1e+02 Score=29.02 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=50.5
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+..+|||++..-..|-...++.|+-++++.. +.++.-+. ..+ ..
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--g~~~~~~~------------------------~~~----------~~ 47 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--GVNLRVLE------------------------AGG----------YP 47 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--TCEEEEEE------------------------CSS----------TT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--CCeEEEEc------------------------CCC----------CC
Confidence 4579999999888899999999999987764 33322111 001 01
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchh
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDS 196 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS 196 (570)
+.+...+.++.+...++||+|+.+.+..
T Consensus 48 ~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 48 NKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 3455667788888899999999987755
No 82
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=43.43 E-value=2.4e+02 Score=27.42 Aligned_cols=88 Identities=15% Similarity=0.049 Sum_probs=56.3
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
.+..+|||++..-..|-...++.|+-++++.. |.+++-+. ..+
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~------------------------~~~----------- 102 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAA--GYQMLIGN------------------------SHY----------- 102 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHT--TCEEEEEE------------------------CTT-----------
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEe------------------------CCC-----------
Confidence 34579999999888888899999999887653 44432110 111
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
+.+...+.++.+...++||+|+.+-+.+.... +.+.+.+ ++||.+
T Consensus 103 -~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~----~~l~~~~--iPvV~~ 147 (339)
T 3h5o_A 103 -DAGQELQLLRAYLQHRPDGVLITGLSHAEPFE----RILSQHA--LPVVYM 147 (339)
T ss_dssp -CHHHHHHHHHHHHTTCCSEEEEECSCCCTTHH----HHHHHTT--CCEEEE
T ss_pred -ChHHHHHHHHHHHcCCCCEEEEeCCCCCHHHH----HHHhcCC--CCEEEE
Confidence 23445677888889999999999876543222 2333345 556655
No 83
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=42.60 E-value=40 Score=32.18 Aligned_cols=81 Identities=14% Similarity=0.098 Sum_probs=53.3
Q ss_pred CCCEEEEEeCCcccccC---------CCEEECChhhhccccccCCceecccCCCCCCChHHHHHHHHHHHHcCCCEEEEe
Q 008310 121 KGSKLYGFRGGPAGIMK---------CKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVI 191 (570)
Q Consensus 121 ~~~~v~Gf~~G~~GLl~---------~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~~~~~~~~l~k~~Id~LviI 191 (570)
....++|+=+|..=|++ +++--++++..+.|...| .++-....| +.-++++|++.+.+++.+-++++
T Consensus 21 ~~~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~--~i~~~p~eK--D~TD~e~Al~~a~~~~~~~I~i~ 96 (212)
T 3l8m_A 21 KHEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI--EINPYNSEK--DDTDLALGIDQAVKRGYRNIDVY 96 (212)
T ss_dssp TTSEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT--BCCCCC-----CBCHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC--cEEEECCcC--CCCHHHHHHHHHHHCCCCEEEEE
Confidence 35677887777665554 344455666677777665 354333333 34479999999999999999999
Q ss_pred cCch-----hHHHHHHHHH
Q 008310 192 GGDD-----SNTNACLLAE 205 (570)
Q Consensus 192 GGdd-----S~t~A~~Lae 205 (570)
|+-| ++.+...|..
T Consensus 97 Ga~GgR~DH~lani~ll~~ 115 (212)
T 3l8m_A 97 GATGGRLDHFMGALQILEK 115 (212)
T ss_dssp SCSSSCHHHHHHHHHHHTC
T ss_pred cCCCCchhHHHHHHHHHHh
Confidence 9966 4555566654
No 84
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=42.45 E-value=1.2e+02 Score=30.72 Aligned_cols=98 Identities=10% Similarity=0.035 Sum_probs=51.0
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
.++||+|+.||.- +| +..++++.+.-.-..++.++.---. ++..+...-|-...--...+..
T Consensus 104 ~~~ri~vl~Sg~g----~n-l~~ll~~~~~g~l~~~I~~Visn~~-------------~~~~~A~~~gIp~~~~~~~~~~ 165 (302)
T 3o1l_A 104 QKKRVVLMASRES----HC-LADLLHRWHSDELDCDIACVISNHQ-------------DLRSMVEWHDIPYYHVPVDPKD 165 (302)
T ss_dssp SCCEEEEEECSCC----HH-HHHHHHHHHTTCSCSEEEEEEESSS-------------TTHHHHHTTTCCEEECCCCSSC
T ss_pred CCcEEEEEEeCCc----hh-HHHHHHHHHCCCCCcEEEEEEECcH-------------HHHHHHHHcCCCEEEcCCCcCC
Confidence 4689999999982 33 5666665443222346665542111 1112222223222221222222
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAE 205 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae 205 (570)
.++.-+++++.+++++.|.+|+.| .+-.-....|..
T Consensus 166 r~~~~~~~~~~l~~~~~DliVlag-ym~IL~~~~l~~ 201 (302)
T 3o1l_A 166 KEPAFAEVSRLVGHHQADVVVLAR-YMQILPPQLCRE 201 (302)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESS-CCSCCCTTHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEHhH-hhhhcCHHHHhh
Confidence 334445788999999999777665 444444444443
No 85
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=42.39 E-value=2.2e+02 Score=27.19 Aligned_cols=103 Identities=14% Similarity=0.139 Sum_probs=63.4
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
.+..+|||++..-..|-...++.|+-+++++. |.++.-+. ..+
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~------------------------~~~----------- 55 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGH--STDVLLGQ------------------------IDA----------- 55 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHT--TCCEEEEE------------------------CCS-----------
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--CCEEEEEe------------------------CCC-----------
Confidence 44578999999888899999999999887653 33332110 000
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
+.+...+.++.+...++||+|+.+.+.+.. ..+ +.+.+ +++||.+ |.+... .+ .++++|-
T Consensus 56 -~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~--~~~-~~l~~---~iPvV~i----~~~~~~-~~-~~V~~D~ 115 (303)
T 3kke_A 56 -PPRGTQQLSRLVSEGRVDGVLLQRREDFDD--DML-AAVLE---GVPAVTI----NSRVPG-RV-GSVILDD 115 (303)
T ss_dssp -TTHHHHHHHHHHHSCSSSEEEECCCTTCCH--HHH-HHHHT---TSCEEEE----SCCCTT-CC-CEEEECH
T ss_pred -ChHHHHHHHHHHHhCCCcEEEEecCCCCcH--HHH-HHHhC---CCCEEEE----CCcCCC-CC-CEEEECc
Confidence 234456778889999999999999876642 123 33344 4567755 444443 22 3566553
No 86
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=41.34 E-value=2.2e+02 Score=26.49 Aligned_cols=50 Identities=18% Similarity=0.129 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCCEEEEe-cCch----hHHHHHHHHHHHhcCCCCceEEEeec
Q 008310 172 QFKQAEETVKKLDLDGLVVI-GGDD----SNTNACLLAENFRSKDMKTRVIGCPK 221 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviI-GGdd----S~t~A~~Lae~~~~~g~~i~VIgVPK 221 (570)
.++.+++.+++++++++=+. ...- +-..+..+.+.+.+.|+.+..++.|-
T Consensus 15 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 69 (278)
T 1i60_A 15 NLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPLALNALV 69 (278)
T ss_dssp CHHHHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEEEEEEEE
T ss_pred CHHHHHHHHHHhCCCEEEEccHHHHHHHhccCCHHHHHHHHHHcCCCeeeecccc
Confidence 36788888999999999887 5432 11345677888888898887788885
No 87
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=40.49 E-value=48 Score=33.91 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHH
Q 008310 169 TPEQFKQAEETVKKL----DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKT 244 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~----~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~ 244 (570)
+++++.++.+.++++ +.||+||.=|.|||.-.+.+-.++.+. +.+||-.=.=.-- ..++.|-..|.
T Consensus 63 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~~--~kPVVlTGAmrP~--------~~~~sDg~~NL 132 (331)
T 1agx_A 63 TDKELLSLARQVNDLVKKPSVNGVVITHGTDTMEETAFFLNLVVHT--DKPIVLVGSMRPS--------TALSADGPLNL 132 (331)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCGGGHHHHHHHHHHHCCC--SSCEEEECCSSCT--------TSTTCSHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCcchHHHHHHHHHHHcCC--CCCEEEeCCCCCC--------CCCCchhHHHH
Confidence 678888887777765 699999999999997755555555543 3455544211111 24555666666
Q ss_pred HHHH
Q 008310 245 FSEV 248 (570)
Q Consensus 245 ~se~ 248 (570)
+.-+
T Consensus 133 ~~Av 136 (331)
T 1agx_A 133 YSAV 136 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 88
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=40.48 E-value=54 Score=31.39 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=59.8
Q ss_pred CCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCC
Q 008310 87 ENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDK 166 (570)
Q Consensus 87 ~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k 166 (570)
..+..+|||++ .-..|-...++.|+-++++.. |.++.-+. ..+
T Consensus 9 ~~~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~------------------------~~~---------- 51 (289)
T 3k9c_A 9 QASSRLLGVVF-ELQQPFHGDLVEQIYAAATRR--GYDVMLSA------------------------VAP---------- 51 (289)
T ss_dssp ----CEEEEEE-ETTCHHHHHHHHHHHHHHHHT--TCEEEEEE------------------------EBT----------
T ss_pred cCCCCEEEEEE-ecCCchHHHHHHHHHHHHHHC--CCEEEEEe------------------------CCC----------
Confidence 34557999999 778888889999999887653 44433111 001
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 167 IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 167 ~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
+.+ ..+.++.+...++||+|+.+.+.+.. .+ +.+.+ +++||. +|.+.....+ .++++|-
T Consensus 52 --~~~-~~~~~~~l~~~~vdgiIi~~~~~~~~---~~-~~~~~---~iPvV~----i~~~~~~~~~-~~V~~D~ 110 (289)
T 3k9c_A 52 --SRA-EKVAVQALMRERCEAAILLGTRFDTD---EL-GALAD---RVPALV----VARASGLPGV-GAVRGDD 110 (289)
T ss_dssp --TBC-HHHHHHHHTTTTEEEEEEETCCCCHH---HH-HHHHT---TSCEEE----ESSCCSSTTS-EEEEECH
T ss_pred --CHH-HHHHHHHHHhCCCCEEEEECCCCCHH---HH-HHHHc---CCCEEE----EcCCCCCCCC-CEEEeCh
Confidence 011 24556677788999999999876542 22 23333 456775 4555543332 3555554
No 89
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=40.22 E-value=1e+02 Score=29.28 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=53.8
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCCh
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETP 170 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~ 170 (570)
+||+|+.||.-+ ....++++++...-+.++.++.--.. +.....+...=|-..+--.+.++.+.
T Consensus 1 ~ri~vl~Sg~gs-----nl~ali~~~~~~~~~~~i~~Vis~~~-----------~~~~~~~A~~~gIp~~~~~~~~~~~r 64 (212)
T 1jkx_A 1 MNIVVLISGNGS-----NLQAIIDACKTNKIKGTVRAVFSNKA-----------DAFGLERARQAGIATHTLIASAFDSR 64 (212)
T ss_dssp CEEEEEESSCCH-----HHHHHHHHHHTTSSSSEEEEEEESCT-----------TCHHHHHHHHTTCEEEECCGGGCSSH
T ss_pred CEEEEEEECCcH-----HHHHHHHHHHcCCCCceEEEEEeCCC-----------chHHHHHHHHcCCcEEEeCcccccch
Confidence 489999999763 26667776654333467776652110 00112222222333333233334454
Q ss_pred HHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 008310 171 EQF-KQAEETVKKLDLDGLVVIGGDDSNTNACLLAE 205 (570)
Q Consensus 171 e~~-~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae 205 (570)
+.+ +.+.+.+++++.|.+|+.| .+-.-....|..
T Consensus 65 ~~~~~~~~~~l~~~~~Dliv~ag-y~~il~~~~l~~ 99 (212)
T 1jkx_A 65 EAYDRELIHEIDMYAPDVVVLAG-FMRILSPAFVSH 99 (212)
T ss_dssp HHHHHHHHHHHGGGCCSEEEESS-CCSCCCHHHHHH
T ss_pred hhccHHHHHHHHhcCCCEEEEeC-hhhhCCHHHHhh
Confidence 555 4567889999999777764 554444455543
No 90
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=39.89 E-value=1.2e+02 Score=27.43 Aligned_cols=93 Identities=18% Similarity=0.155 Sum_probs=57.9
Q ss_pred CccEEEEEecCCCCchh-hHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGG-HNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~-nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
...+|-+.+.||+.--+ -++++.+++. .|++|+ .+ |. ..+.+.+-.....-+.+++|-|-..-
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~-----~G~eVi-~l-G~---------~~p~e~lv~aa~~~~~diV~lS~~~~ 80 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRD-----AGFEVV-YT-GL---------RQTPEQVAMAAVQEDVDVIGVSILNG 80 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHH-----TTCEEE-CC-CS---------BCCHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHH-----CCCEEE-EC-CC---------CCCHHHHHHHHHhcCCCEEEEEeech
Confidence 34688888888877433 3455555432 477766 11 11 13555433333333457888665444
Q ss_pred CChHHHHHHHHHHHHcCC-CEEEEecCchhH
Q 008310 168 ETPEQFKQAEETVKKLDL-DGLVVIGGDDSN 197 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~I-d~LviIGGddS~ 197 (570)
.+.+.+.+.++.|++.++ +..|++||.-..
T Consensus 81 ~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~~ 111 (161)
T 2yxb_A 81 AHLHLMKRLMAKLRELGADDIPVVLGGTIPI 111 (161)
T ss_dssp CHHHHHHHHHHHHHHTTCTTSCEEEEECCCH
T ss_pred hhHHHHHHHHHHHHhcCCCCCEEEEeCCCch
Confidence 466888999999999887 688999997543
No 91
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=39.60 E-value=2.2e+02 Score=26.75 Aligned_cols=104 Identities=20% Similarity=0.171 Sum_probs=59.1
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCCh
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETP 170 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~ 170 (570)
.+|||++..-..|-...++.|+-+.++.. |.+++ +..+. .++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~ 43 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKEL--GYKII---------------------------------VEDSQ---NDS 43 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------EEECT---TCH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhc--CcEEE---------------------------------EecCC---CCH
Confidence 58999998877888888999998887653 22221 00111 123
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
+...+.++.+...++||+|+.+.+.+... ..+ +.+.+.+ ++||.+ |.+........+++.|-
T Consensus 44 ~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 105 (283)
T 2ioy_A 44 SKELSNVEDLIQQKVDVLLINPVDSDAVV-TAI-KEANSKN--IPVITI----DRSANGGDVVCHIASDN 105 (283)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSTTTTH-HHH-HHHHHTT--CCEEEE----SSCCSSSCCSEEEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhhhH-HHH-HHHHHCC--CeEEEe----cCCCCCcceeEEEecCh
Confidence 33445667777899999999876543211 122 2333345 456654 44443221113566663
No 92
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=39.43 E-value=11 Score=27.77 Aligned_cols=18 Identities=39% Similarity=0.750 Sum_probs=15.5
Q ss_pred HHHhhhchHHHHHHhhhc
Q 008310 370 QELFELFPEEIQKQLLLE 387 (570)
Q Consensus 370 ~~lf~~lp~~i~~ql~~~ 387 (570)
.++|+.||..||++|+..
T Consensus 18 ~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 18 QEVFKQLPADIQEEILSG 35 (48)
T ss_dssp GGGTTTSCHHHHHHHTTC
T ss_pred HHHHHHCcHHHHHHHHhc
Confidence 479999999999998754
No 93
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=39.33 E-value=1.6e+02 Score=27.56 Aligned_cols=104 Identities=14% Similarity=0.073 Sum_probs=59.8
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCCh
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETP 170 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~ 170 (570)
++|||++..-..|-...++.|+-+.++.. +.+++-+ .+. .+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~--g~~~~~~---------------------------------~~~---~~~ 43 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKL--GYNLVVL---------------------------------DSQ---NNP 43 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHH--TCEEEEE---------------------------------ECT---TCH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHc--CcEEEEe---------------------------------CCC---CCH
Confidence 58999998878888888999998887653 2332210 010 122
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
+.....++.+...++||+|+.+.+..... ..+ +.+.+.+ ++||.+ |++........+++.|-
T Consensus 44 ~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~i----~~~~~~~~~~~~V~~D~ 105 (271)
T 2dri_A 44 AKELANVQDLTVRGTKILLINPTDSDAVG-NAV-KMANQAN--IPVITL----DRQATKGEVVSHIASDN 105 (271)
T ss_dssp HHHHHHHHHHTTTTEEEEEECCSSTTTTH-HHH-HHHHHTT--CCEEEE----SSCCSSSCCSEEEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCChHHHH-HHH-HHHHHCC--CcEEEe----cCCCCCCceeEEEecCh
Confidence 33345667777889999999876543211 112 2333344 556654 55444322223566663
No 94
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=38.35 E-value=2.6e+02 Score=27.07 Aligned_cols=73 Identities=25% Similarity=0.308 Sum_probs=49.4
Q ss_pred CCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCC
Q 008310 87 ENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDK 166 (570)
Q Consensus 87 ~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k 166 (570)
..+..||||+..- +-|.++++-.|+.+.|+.. |+ .++.-+++ .|.|..|
T Consensus 5 ~~~~~~igi~q~~-~hp~ld~~~~G~~~~L~~~-------G~-------~~g~nv~~------~~~~a~g---------- 53 (302)
T 3lkv_A 5 MAKTAKVAVSQIV-EHPALDATRQGLLDGLKAK-------GY-------EEGKNLEF------DYKTAQG---------- 53 (302)
T ss_dssp --CCEEEEEEESC-CCHHHHHHHHHHHHHHHHT-------TC-------CBTTTEEE------EEEECTT----------
T ss_pred hcCCceEEEEEee-cChhHHHHHHHHHHHHHhh-------Cc-------ccCCcEEE------EEEeCCC----------
Confidence 3456899999874 6799999999999998763 11 12221222 1334334
Q ss_pred CCChHHHHHHHHHHHHcCCCEEEEec
Q 008310 167 IETPEQFKQAEETVKKLDLDGLVVIG 192 (570)
Q Consensus 167 ~~~~e~~~~~~~~l~k~~Id~LviIG 192 (570)
+......+++.+...+.|.+|.||
T Consensus 54 --d~~~~~~~~~~l~~~~~DlIiai~ 77 (302)
T 3lkv_A 54 --NPAIAVQIARQFVGENPDVLVGIA 77 (302)
T ss_dssp --CHHHHHHHHHHHHTTCCSEEEEES
T ss_pred --CHHHHHHHHHHHHhcCCcEEEEcC
Confidence 345677788889999999888776
No 95
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=37.97 E-value=34 Score=34.05 Aligned_cols=42 Identities=17% Similarity=0.334 Sum_probs=31.2
Q ss_pred CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCC
Q 008310 184 DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 228 (570)
Q Consensus 184 ~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 228 (570)
+.|.+|++|||||...+. ..+...+.++++-.+|.==-||+.
T Consensus 63 ~~d~vv~~GGDGTl~~v~---~~l~~~~~~~~l~iiP~Gt~N~~a 104 (304)
T 3s40_A 63 KVDLIIVFGGDGTVFECT---NGLAPLEIRPTLAIIPGGTCNDFS 104 (304)
T ss_dssp TCSEEEEEECHHHHHHHH---HHHTTCSSCCEEEEEECSSCCHHH
T ss_pred CCCEEEEEccchHHHHHH---HHHhhCCCCCcEEEecCCcHHHHH
Confidence 789999999999987653 223333456789999987777775
No 96
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=37.66 E-value=2.7e+02 Score=26.42 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=47.0
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIET 169 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~ 169 (570)
+.+||+++.....|-...++.|+-++++.. |.++. +..+. .+
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~l~---------------------------------~~~~~---~~ 43 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--GITLK---------------------------------IADGQ---QK 43 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------EEECT---TC
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--CCEEE---------------------------------EeCCC---CC
Confidence 479999999888888888999998887653 22221 00000 12
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchh
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDS 196 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS 196 (570)
.+...+.++.+...++||+|+.+.+.+
T Consensus 44 ~~~~~~~i~~l~~~~vdgiIi~~~~~~ 70 (306)
T 2vk2_A 44 QENQIKAVRSFVAQGVDAIFIAPVVAT 70 (306)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCSSSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 344456677788889999999987653
No 97
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=37.37 E-value=2.6e+02 Score=26.08 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=47.5
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+..+|||++..-..|-...++.|+-++++.. +.++. + .+.+ .
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~----------------~--------~~~~------------~ 47 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--GYTLI----------------L--------GNAW------------N 47 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHH--TCEEE----------------E--------EECT------------T
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCeEE----------------E--------EcCC------------C
Confidence 4469999998878888888999998887653 22211 0 0010 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchh
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDS 196 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS 196 (570)
+.+.....++.+...++||+|+.+.+.+
T Consensus 48 ~~~~~~~~~~~l~~~~vdgii~~~~~~~ 75 (289)
T 1dbq_A 48 NLEKQRAYLSMMAQKRVDGLLVMCSEYP 75 (289)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECSCCC
T ss_pred ChHHHHHHHHHHHhCCCCEEEEEeccCC
Confidence 3455566778888899999999987754
No 98
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=37.30 E-value=1.4e+02 Score=28.19 Aligned_cols=90 Identities=19% Similarity=0.150 Sum_probs=49.7
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+..+|||++..-..|-...++.|+-++++.. +.++.-+. +..+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~-----------------------~~~~------------ 49 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKN--GYNLIIVY-----------------------SGSA------------ 49 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHTT--TCEEEEEC---------------------------------------
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCeEEEEe-----------------------CCCC------------
Confidence 4579999998888888899999998886542 33221100 0000
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeec
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 221 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 221 (570)
+.+.....++.+...++||+|+.+.+.+. ..+ +.+.+.+ ++||.+-.
T Consensus 50 ~~~~~~~~~~~l~~~~vdgiI~~~~~~~~---~~~-~~l~~~~--iPvV~~~~ 96 (290)
T 3clk_A 50 DPEEQKHALLTAIERPVMGILLLSIALTD---DNL-QLLQSSD--VPYCFLSM 96 (290)
T ss_dssp ------CHHHHHHSSCCSEEEEESCC-------CH-HHHHCC----CEEEESC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecccCCH---HHH-HHHHhCC--CCEEEEcC
Confidence 11122345566778899999999877542 122 3344444 56776533
No 99
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=37.09 E-value=2.2e+02 Score=26.59 Aligned_cols=107 Identities=14% Similarity=0.038 Sum_probs=61.7
Q ss_pred ccEEEEEecCCC--CchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 90 SLKIGVVLSGGQ--APGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 90 ~~~IGIv~sGG~--aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
..+|||++..-. .|-...++.|+-++++.. +.++. +......
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~---------------------------------~~~~~~~- 48 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--EIKLE---------------------------------FMAPEKE- 48 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--TCEEE---------------------------------ECCCSST-
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--CCEEE---------------------------------EecCCCC-
Confidence 468999998766 788888999998887654 22211 0000000
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
.+.+.....++.+...++||+|+.+.+.+... ..+ +.+.+.+ ++||.+ |.+........++++|-
T Consensus 49 ~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 113 (289)
T 3brs_A 49 EDYLVQNELIEEAIKRKPDVILLAAADYEKTY-DAA-KEIKDAG--IKLIVI----DSGMKQDIADITVATDN 113 (289)
T ss_dssp TCHHHHHHHHHHHHHTCCSEEEECCSCTTTTH-HHH-TTTGGGT--CEEEEE----SSCCSSCCCSEEEECCH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCChHHhH-HHH-HHHHHCC--CcEEEE----CCCCCCCcceEEEeeCh
Confidence 13344566777888899999999987654211 112 2233334 567765 44443321113566654
No 100
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=36.64 E-value=2.9e+02 Score=26.40 Aligned_cols=105 Identities=17% Similarity=0.119 Sum_probs=65.3
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIET 169 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~ 169 (570)
..+|||++..-..|=...++.|+-++++.. |.++.-+. .. .+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~------------------------~~------------~~ 44 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEA--GYKTDLQY------------------------AD------------DD 44 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHT--TCEEEEEE------------------------CT------------TC
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHc--CCEEEEee------------------------CC------------CC
Confidence 479999999988899999999999987653 33322110 00 13
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCC-CCCCCCCChhh
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKC-KDVPISFGFDT 240 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~-~~ie~s~GFdT 240 (570)
.+.....++.+...++||+|+.+-+..... . ..+.+.+.| ++||.+ |++..+ .....++|+|-
T Consensus 45 ~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~-~-~~~~~~~~g--iPvV~~----~~~~~~~~~~~~~V~~D~ 108 (330)
T 3uug_A 45 IPNQLSQIENMVTKGVKVLVIASIDGTTLS-D-VLKQAGEQG--IKVIAY----DRLIRNSGDVSYYATFDN 108 (330)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCSSGGGGH-H-HHHHHHHTT--CEEEEE----SSCCCSCTTCCEEEEECH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCchhHH-H-HHHHHHHCC--CCEEEE----CCCCCCCCceeEEEEeCH
Confidence 445566778888889999999988753211 1 112333344 567754 555544 23334676653
No 101
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=36.44 E-value=25 Score=29.68 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCCCceEEEeeccccCCCC
Q 008310 197 NTNACLLAENFRSKDMKTRVIGCPKTIDGDLK 228 (570)
Q Consensus 197 ~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~ 228 (570)
......|.+.+++.+...-|||.|+++||...
T Consensus 37 ~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~ 68 (98)
T 1iv0_A 37 EEDVEALLDFVRREGLGKLVVGLPLRTDLKES 68 (98)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCCCCSSSC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeccCCCCCcC
Confidence 34556666666666777778888888887654
No 102
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=34.97 E-value=95 Score=30.25 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=59.4
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
.+..+||+++..-..|-...++.|+-++++.. |.++.-+ +..+
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~------------------------~~~~----------- 100 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMY--KYNIILS------------------------NSDQ----------- 100 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH--TCEEEEE------------------------ECCS-----------
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--CCEEEEE------------------------eCCC-----------
Confidence 34579999998777888889999998887653 2222100 0000
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
+++.....++.+...++||+|+.+.+.+. ..+ +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 101 -~~~~~~~~~~~l~~~~vdgiI~~~~~~~~---~~~-~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 161 (332)
T 2hsg_A 101 -NQDKELHLLNNMLGKQVDGIIFMSGNVTE---EHV-EELKKSP--VPVVLA----ASIESTNQI-PSVTIDY 161 (332)
T ss_dssp -HHHHHHHHHHHTSCCSSCCEEECCSSCCH---HHH-HHHTTSS--SCEEEE----SCCCSCTTS-CEEEECH
T ss_pred -ChHHHHHHHHHHHhCCCcEEEEecCCCCH---HHH-HHHHhCC--CCEEEE----ccccCCCCC-CEEEECh
Confidence 22334456677777899999999876543 222 3344444 567755 443332222 3566664
No 103
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=34.76 E-value=2.2e+02 Score=26.84 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHc-CCCEEEEecCchhHHHHHHHHHHHhcCCC---CceEEEe
Q 008310 171 EQFKQAEETVKKL-DLDGLVVIGGDDSNTNACLLAENFRSKDM---KTRVIGC 219 (570)
Q Consensus 171 e~~~~~~~~l~k~-~Id~LviIGGddS~t~A~~Lae~~~~~g~---~i~VIgV 219 (570)
+.++.+.+.+.++ ++++++|++.+|.+... ..+.+++.|. ++.|+|.
T Consensus 181 ~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g--~~~al~~~g~~v~di~vvG~ 231 (306)
T 8abp_A 181 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLG--GVRATEGQGFKAADIIGIGI 231 (306)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEECSSHHHHHH--HHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcHHHHH--HHHHHHHcCCCCCceEEEEe
Confidence 4455555666554 69998888888876543 3345666776 4666764
No 104
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=34.36 E-value=2.8e+02 Score=26.82 Aligned_cols=91 Identities=10% Similarity=-0.006 Sum_probs=55.1
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+..+|||++..-..|-...++.|+-++++.. +.++. +..+. .
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~l~---------------------------------~~~~~---~ 45 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV--GLPYV---------------------------------PLTTE---G 45 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH--TCCEE---------------------------------EEECT---T
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc--CCEEE---------------------------------EecCC---C
Confidence 3469999998877888888999998887652 21111 00000 1
Q ss_pred ChHHHHHHHHHHHHcC--CCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeec
Q 008310 169 TPEQFKQAEETVKKLD--LDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPK 221 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~--Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPK 221 (570)
+.+.....++.+...+ +|++|+.+.+.+... ..+ +.+.+.+ ++||.+-.
T Consensus 46 ~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~~~ 96 (332)
T 2rjo_A 46 SSEKGIADIRALLQKTGGNLVLNVDPNDSADAR-VIV-EACSKAG--AYVTTIWN 96 (332)
T ss_dssp CHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHH-HHH-HHHHHHT--CEEEEESC
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHH-HHH-HHHHHCC--CeEEEECC
Confidence 2344455677777788 999999987764311 112 2233334 56776533
No 105
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=33.46 E-value=52 Score=29.23 Aligned_cols=82 Identities=11% Similarity=0.112 Sum_probs=47.0
Q ss_pred EEEEecCchhH---HHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhcCCee
Q 008310 187 GLVVIGGDDSN---TNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYY 263 (570)
Q Consensus 187 ~LviIGGddS~---t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ni~~Da~S~~k~~ 263 (570)
.++++=|.+|. .-+..|++++.+.+....|+ +| |+++. | .++.+.+...+... . ..+ +
T Consensus 4 tIl~lHGf~ss~~s~k~~~l~~~~~~~~~~~~v~-~p-----dl~~~------g-~~~~~~l~~~~~~~----~-~~~-i 64 (202)
T 4fle_A 4 TLLYIHGFNSSPSSAKATTFKSWLQQHHPHIEMQ-IP-----QLPPY------P-AEAAEMLESIVMDK----A-GQS-I 64 (202)
T ss_dssp EEEEECCTTCCTTCHHHHHHHHHHHHHCTTSEEE-CC-----CCCSS------H-HHHHHHHHHHHHHH----T-TSC-E
T ss_pred EEEEeCCCCCCCCccHHHHHHHHHHHcCCCcEEE-Ee-----CCCCC------H-HHHHHHHHHHHHhc----C-CCc-E
Confidence 46677674432 34678899998888777776 33 45432 2 34445444444332 1 223 2
Q ss_pred EEEEecCCCCc-HHHHHhhhhcCCcEEE
Q 008310 264 HFIRLMGRAAS-HITLECALQTHPNIAI 290 (570)
Q Consensus 264 ~fIevMGR~ag-~lAle~aLat~pnivl 290 (570)
=++|+|-| ++|+..|.+.......
T Consensus 65 ---~l~G~SmGG~~a~~~a~~~~~~~~~ 89 (202)
T 4fle_A 65 ---GIVGSSLGGYFATWLSQRFSIPAVV 89 (202)
T ss_dssp ---EEEEETHHHHHHHHHHHHTTCCEEE
T ss_pred ---EEEEEChhhHHHHHHHHHhcccchh
Confidence 35788775 7777777765544333
No 106
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=32.28 E-value=82 Score=31.77 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=39.1
Q ss_pred HHhhhcCCeeEEEEecCC-CCcHHHHHhhhhcCCcEEEEC-----------CchhhhhcchHHHHH
Q 008310 254 TDARSSGKYYHFIRLMGR-AASHITLECALQTHPNIAIIG-----------EEIAAKKLTLKNVTD 307 (570)
Q Consensus 254 ~Da~S~~k~~~fIevMGR-~ag~lAle~aLat~pnivlIp-----------Ee~~~~~~tL~~iv~ 307 (570)
...+..++.+.||=+||- |.||++|--+-...+|.++++ |+...-..||+.-.+
T Consensus 18 ~~~r~~g~~IgfVPTMG~LH~GHlsLv~~Ar~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ 83 (287)
T 3q12_A 18 RRWRQEGKRIALVPTMGNLHEGHMTLVDEAKTRADVVVVTIFVNPLQFERPDDLAHYPRTLQEDCE 83 (287)
T ss_dssp HHHHHTTCCEEEEEECSSCCHHHHHHHHHHHTTSSEEEEEECCCGGGCSSHHHHHHSCCCHHHHHH
T ss_pred HHHHHcCCeEEEEcCCCcccHHHHHHHHHHHHhCCEEEEEeccCcccCCCcchhhcCCCCHHHHHH
Confidence 444556678999999996 889999987777788988875 444444456655544
No 107
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=31.62 E-value=3.2e+02 Score=25.34 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=55.7
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+..+|||++..-..|-...++.|+.++++.. +.++.-+. .. .
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~------------------------~~------------~ 48 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAH--GYQVLIGN------------------------SD------------N 48 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHT--TCCEEEEE------------------------CT------------T
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEEe------------------------CC------------C
Confidence 4578999998888888899999998887653 33332110 00 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHH-HHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAE-NFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae-~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
+.+.....++.+...++||+|+.+.+.. . + + .+.+.+ ++||. +|++..... ++++|-
T Consensus 49 ~~~~~~~~~~~l~~~~~dgiIi~~~~~~--~---~-~~~l~~~~--iPvV~----~~~~~~~~~---~V~~D~ 106 (277)
T 3e61_A 49 DIKKAQGYLATFVSHNCTGMISTAFNEN--I---I-ENTLTDHH--IPFVF----IDRINNEHN---GISTNH 106 (277)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECGGGHH--H---H-HHHHHHC---CCEEE----GGGCC------------H
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCChH--H---H-HHHHHcCC--CCEEE----EeccCCCCC---eEEech
Confidence 2345567788889999999999983321 1 2 2 334444 45664 455554332 556553
No 108
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=31.36 E-value=1.5e+02 Score=28.13 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=48.0
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIET 169 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~ 169 (570)
++||+|+.||... ....+++++.+..-..++.++.--.. +..+..+...=|-..+--...++.+
T Consensus 1 m~rI~vl~SG~g~-----~~~~~l~~l~~~~~~~~i~~Vvs~~~-----------~~~~~~~A~~~gIp~~~~~~~~~~~ 64 (216)
T 2ywr_A 1 MLKIGVLVSGRGS-----NLQAIIDAIESGKVNASIELVISDNP-----------KAYAIERCKKHNVECKVIQRKEFPS 64 (216)
T ss_dssp CEEEEEEECSCCH-----HHHHHHHHHHTTSSCEEEEEEEESCT-----------TCHHHHHHHHHTCCEEECCGGGSSS
T ss_pred CCEEEEEEeCCcH-----HHHHHHHHHHhCCCCCeEEEEEeCCC-----------ChHHHHHHHHcCCCEEEeCcccccc
Confidence 3699999999862 24445555443211226666652111 0011112122232232212223444
Q ss_pred hHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHH
Q 008310 170 PEQF-KQAEETVKKLDLDGLVVIGGDDSNTNACLL 203 (570)
Q Consensus 170 ~e~~-~~~~~~l~k~~Id~LviIGGddS~t~A~~L 203 (570)
.+.+ +.+.+.+++++.|.+|+.| .+-.-....|
T Consensus 65 r~~~~~~~~~~l~~~~~Dliv~a~-y~~il~~~~l 98 (216)
T 2ywr_A 65 KKEFEERMALELKKKGVELVVLAG-FMRILSHNFL 98 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEESS-CCSCCCHHHH
T ss_pred hhhhhHHHHHHHHhcCCCEEEEeC-chhhCCHHHH
Confidence 4555 3567889999999777665 5443333444
No 109
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=30.97 E-value=1e+02 Score=31.53 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=63.3
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCce--ecccCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFD--MLCSGRD 165 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~--~lGs~R~ 165 (570)
..++||.+|+ |-.|+.--. +.+++++++. ++.++.-+..|-.- ++..+.++.+.-..-.+ +.+.+-.
T Consensus 23 ~~m~ki~~v~--Gtr~~~~~~-a~li~~l~~~-~~~~~~~~~tG~h~-------~~~~~~~~~~~i~~~~~l~~~~~~~~ 91 (396)
T 3dzc_A 23 NAMKKVLIVF--GTRPEAIKM-APLVQQLCQD-NRFVAKVCVTGQHR-------EMLDQVLELFSITPDFDLNIMEPGQT 91 (396)
T ss_dssp -CCEEEEEEE--CSHHHHHHH-HHHHHHHHHC-TTEEEEEEECCSSS-------HHHHHHHHHTTCCCSEECCCCCTTCC
T ss_pred CCCCeEEEEE--eccHhHHHH-HHHHHHHHhC-CCCcEEEEEecccH-------HHHHHHHHhcCCCCceeeecCCCCCC
Confidence 4567888887 677775544 6688888753 56777655656431 11111112111111100 0011100
Q ss_pred CC-CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEee
Q 008310 166 KI-ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 220 (570)
Q Consensus 166 k~-~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 220 (570)
.. .+-.-+.++.+.+++.+-|.+++.|+..+.-.++..+. .. +|+|+++-
T Consensus 92 ~~~~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~---~~--~IPv~h~~ 142 (396)
T 3dzc_A 92 LNGVTSKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAY---YQ--QIPVGHVE 142 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHH---TT--TCCEEEET
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHH---Hh--CCCEEEEE
Confidence 00 12334677788899999999999998877544443332 23 46677654
No 110
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=30.84 E-value=80 Score=32.18 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHH
Q 008310 169 TPEQFKQAEETVKKL----DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKT 244 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~----~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~ 244 (570)
+++++.++.+.++++ +.||+||.=|.|||.-.+.+-.++.+.+ .+||-.=.=.-- ..++.|-..|.
T Consensus 66 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~~~--kPVVlTGAmrP~--------~~~~sDg~~NL 135 (327)
T 1o7j_A 66 TGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVKSD--KPVVFVAAMRPA--------TAISADGPMNL 135 (327)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCSTTHHHHHHHHHHHCCCC--SCEEEECCSSCT--------TSTTCSHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHHHHHHhCCC--CCEEEeCCCCCC--------CCCCCchHHHH
Confidence 678888887777765 6999999999999977555555554433 355543211111 24566666666
Q ss_pred HHHH
Q 008310 245 FSEV 248 (570)
Q Consensus 245 ~se~ 248 (570)
+.-+
T Consensus 136 ~~Av 139 (327)
T 1o7j_A 136 LEAV 139 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 111
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=30.55 E-value=47 Score=32.02 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=57.5
Q ss_pred CEEEEEeCCcccccC---------CCEEECChhhhccccccCCceecccCCCCCCChHHHHHHHHHHHHcCCCEEEEecC
Q 008310 123 SKLYGFRGGPAGIMK---------CKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGG 193 (570)
Q Consensus 123 ~~v~Gf~~G~~GLl~---------~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~~~~~~~~l~k~~Id~LviIGG 193 (570)
..++|+=+|..=|++ +++--++++..+.|...|- .++-....| +.-++++|++.+.+++.+-++++|+
T Consensus 26 ~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~-~i~~~p~eK--D~TD~e~Al~~a~~~g~~~I~i~Ga 102 (222)
T 3lm8_A 26 TLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAP-ALHVYQAEK--DQTDLDLALDWALEKQPDIIQIFGI 102 (222)
T ss_dssp EEEEEETHHHHHHHHHTCCCSEEESCSTTSCHHHHHHHHHHCT-TCEEECCCS--SSCHHHHHHHHHHHHCCSEEEEESC
T ss_pred CEEEEECHHHHHHHHcCCCCcEEEeCcccCCHHHHHHHHhcCC-eEEEeCCCC--CCCHHHHHHHHHHHcCCCEEEEEcC
Confidence 456667666655543 3333455666667776643 344333333 3346899999999999999999999
Q ss_pred ch-----hHHHHHHHHHHHhcCCCCceE
Q 008310 194 DD-----SNTNACLLAENFRSKDMKTRV 216 (570)
Q Consensus 194 dd-----S~t~A~~Lae~~~~~g~~i~V 216 (570)
-| ++.+...|..+++ .+.++.+
T Consensus 103 ~GgR~DH~lani~ll~~~~~-~~~~i~l 129 (222)
T 3lm8_A 103 TGGRADHFLGNIQLLYKGVK-TNIKIRL 129 (222)
T ss_dssp CCSCHHHHHHHHHHHHHHHH-TTCEEEE
T ss_pred CCCchhHHHHHHHHHHHHHh-cCCcEEE
Confidence 66 5677777776644 3444333
No 112
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=30.53 E-value=82 Score=32.33 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 169 TPEQFKQAEETVKKL---DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~---~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
+++++.++.+.+++. +.|++||.=|.|||.-.+.+-.+... .+.+||-.
T Consensus 70 ~~~~~~~la~~i~~~~~~~~dGvVItHGTDTm~~TA~~L~~~l~--~~kPVVlT 121 (334)
T 3nxk_A 70 CDEIWLRLAKKIAKLFAEGIDGVVITHGTDTMEETAYFLNLTIK--SDKPVVLV 121 (334)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHCC--CCSCEEEE
T ss_pred CHHHHHHHHHHHHHHhhcCCCeEEEECCCchHHHHHHHHHHHcC--CCCCEEEE
Confidence 678888887777764 79999999999999765554455443 34455543
No 113
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=30.42 E-value=2.7e+02 Score=30.11 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=74.8
Q ss_pred cccccCCceecccCCCCCCChHHHHHHHHHHHHcCCCEEEEe------------------------------cCchhHHH
Q 008310 150 PYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVI------------------------------GGDDSNTN 199 (570)
Q Consensus 150 ~~~n~GG~~~lGs~R~k~~~~e~~~~~~~~l~k~~Id~LviI------------------------------GGddS~t~ 199 (570)
.|..+ |+ ||-++|..+ +.+.+++.++.+..++++.|..= ||-=|...
T Consensus 156 rf~~R-G~-mLD~aR~f~-~~~~ik~~id~ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~ga~~~~~~~~~g~YT~~d 232 (512)
T 1jak_A 156 RYAWR-SA-MLDVSRHFF-GVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAE 232 (512)
T ss_dssp SCSEE-EE-EEECSSSCC-CHHHHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHH
T ss_pred CCCcc-ce-eeccCCCCC-CHHHHHHHHHHHHHcCCcEEEEEeccCCCceehhhhhHHHHhhcCccccCCCCCCCCCHHH
Confidence 44445 65 899999765 68899999999999999998642 34457788
Q ss_pred HHHHHHHHhcCCCCceEEE--------------eeccccCC--------CCCCCCCCCCChhhHHHHHHHHHHHHHHHhh
Q 008310 200 ACLLAENFRSKDMKTRVIG--------------CPKTIDGD--------LKCKDVPISFGFDTACKTFSEVIGNVMTDAR 257 (570)
Q Consensus 200 A~~Lae~~~~~g~~i~VIg--------------VPKTIDND--------L~~~~ie~s~GFdTA~k~~se~I~ni~~Da~ 257 (570)
...|.+|++++|+. ||- -|.=-..+ .....-..+++-+.+.+++..+++.++ +.-
T Consensus 233 i~eiv~yA~~rgI~--VIPEID~PGH~~a~l~aypeL~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~Ev~-~lF 309 (512)
T 1jak_A 233 YKEIVRYAASRHLE--VVPEIDMPGHTNAALASYAELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELA-ALT 309 (512)
T ss_dssp HHHHHHHHHHTTCE--EEEECCCSSSCHHHHHHCGGGSTTSCCCCCCCSCCCSCCCCCTTCHHHHHHHHHHHHHHH-HTC
T ss_pred HHHHHHHHHHcCCE--EEEccCCCchHHHHHHhCHHhcCcCCCCccccccCcCCcccCCCCHHHHHHHHHHHHHHH-HhC
Confidence 89999999988854 431 12111100 000001136777888999999888885 443
Q ss_pred hcCCeeEEE--Eec
Q 008310 258 SSGKYYHFI--RLM 269 (570)
Q Consensus 258 S~~k~~~fI--evM 269 (570)
. .+|+|+= |+.
T Consensus 310 p-~~~iHiGgDE~~ 322 (512)
T 1jak_A 310 P-GRYLHIGGDEAH 322 (512)
T ss_dssp C-SSEEECCCCCCT
T ss_pred C-CCeEEECCcccc
Confidence 3 3777776 763
No 114
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=30.38 E-value=3.1e+02 Score=27.07 Aligned_cols=167 Identities=10% Similarity=0.059 Sum_probs=96.7
Q ss_pred EECChhhhccccccCCceecccCCCCCCChHHHHHHHHHHHHcCCCEEEEec----CchhHHHHHHHHHHHhcCCCCceE
Q 008310 141 VELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIG----GDDSNTNACLLAENFRSKDMKTRV 216 (570)
Q Consensus 141 ~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~~~~~~~~l~k~~Id~LviIG----GddS~t~A~~Lae~~~~~g~~i~V 216 (570)
++++.+++......++. +-.|| .+ ++++|.++.+.+.+.+-|.+++|. =.||..+|...++.+. +.++.|
T Consensus 44 ~di~~~efy~~~~~~~~-~p~TS--qp-s~~~~~~~f~~l~~~g~d~ii~i~iSs~LSGTy~sA~~a~~~~~--~~~I~V 117 (285)
T 3lup_A 44 QNLTLDQYYDKLAASKE-LPKTS--QP-SLAELDDLLCQLEKEGYTHVLGLFIAAGISGFWQNIQFLIEEHP--NLTIAF 117 (285)
T ss_dssp TTBCHHHHHHHHHHCSS-CCEEC--CC-CHHHHHHHHHHHHHTTCCEEEECCSCGGGCTHHHHHTTHHHHCT--TSEEEC
T ss_pred CCCCHHHHHHHHHhCCC-CceeC--CC-CHHHHHHHHHHHHHcCCCeEEEEeCCCchhHHHHHHHHHHHhCC--CCCEEE
Confidence 45776655544444442 33333 33 688999999999998888888764 4677888877776532 223333
Q ss_pred EEeeccccCCCCCCCCCCCCChhhHHHHHHHHHH------HHH---HHhhhcCCeeEEEEec------CCCCcHHHH-Hh
Q 008310 217 IGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIG------NVM---TDARSSGKYYHFIRLM------GRAASHITL-EC 280 (570)
Q Consensus 217 IgVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~------ni~---~Da~S~~k~~~fIevM------GR~ag~lAl-e~ 280 (570)
| |.-. .|.|..-.+...++++. .|. .+.....+.||+++.+ ||=+.--|+ ..
T Consensus 118 i------DS~~------~s~g~g~~v~~A~~l~~~G~s~eeI~~~l~~~~~~~~~~f~v~~L~~L~kGGRis~~~a~ig~ 185 (285)
T 3lup_A 118 P------DTKI------TSAPQGNLVRNALMCSREGMDFDVIVNKIQSQIEKIEGFIVVNDLNHLVKGGRLSNGSAIIGN 185 (285)
T ss_dssp C------CCCC------CHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTCEEEEECSCTHHHHHHTCBTTHHHHHHH
T ss_pred E------cCCc------hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEEEECChHHHhhCCCccHHHHHHHH
Confidence 3 3222 26776666666665542 222 2333334556777654 665554443 45
Q ss_pred hhhcCCcEEEECCc---hhhhhcchHHHHHHHHHHHHHHHHcCCCeEEE
Q 008310 281 ALQTHPNIAIIGEE---IAAKKLTLKNVTDYITDIICKRSEAGYNFGVV 326 (570)
Q Consensus 281 aLat~pnivlIpEe---~~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvI 326 (570)
.|.-.|=+.+-.|- +..+-.+-+..++.+.+.+.++... .++-+.
T Consensus 186 lL~IKPIl~~~~~G~l~~~~KvRg~kka~~~l~~~~~~~~~~-~~~~v~ 233 (285)
T 3lup_A 186 LLSIKPVLHFNEEGKIVVYEKVRTEKKALKRLAEIVKEMTAD-GEYDIA 233 (285)
T ss_dssp HTTSCCEEEECTTSCEEEEECCSSHHHHHHHHHHHHHHHGGG-SCEEEE
T ss_pred hhCcEEEEEEccCceEEEeeecCCHHHHHHHHHHHHHHhhcC-CCcEEE
Confidence 56778866664221 2334456666677777777777553 345433
No 115
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=30.32 E-value=1.8e+02 Score=27.13 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=31.3
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEe
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFR 129 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~ 129 (570)
+..+|||++..-..|=...++.|+-++++.. |.++.-+.
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~ 42 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--GYRLSVID 42 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--TCEEEEEC
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--CCEEEEEe
Confidence 4579999999988999999999999987654 56665443
No 116
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=30.06 E-value=1.2e+02 Score=29.65 Aligned_cols=111 Identities=15% Similarity=0.235 Sum_probs=65.2
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccC---------------CCEEECChhhhccccccC
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMK---------------CKFVELSSEFIYPYRNQG 155 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~---------------~~~~eLt~~~v~~~~n~G 155 (570)
.+-++|+++|+-|- .+.-+.+ . ..-++++=+|..=|++ +++--++++..+.|...|
T Consensus 21 ~~~~lIv~ng~~~~---~~~~~~~---~---~~~~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~~~~~~~~~~~ 91 (247)
T 3s4y_A 21 LKYCLVILNQPLDN---YFRHLWN---K---ALLRACADGGANRLYDITEGERESFLPEFINGDFDSIRPEVREYYATKG 91 (247)
T ss_dssp CCEEEEECSSCCCT---THHHHHH---H---CSCEEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCHHHHHHHHHTT
T ss_pred CCEEEEEECCcchH---HHHHHHh---h---CCEEEEEchHHHHHHHhccccccCCCccEEEcCCcCCCHHHHHHHHhcC
Confidence 46677777888873 3333322 1 3456787777655444 233344555666677665
Q ss_pred CceecccCCCCCCChHHHHHHHHHHHHc------CCCEEEEecCchh-----HHHHHHHHHHHhcCCCCc
Q 008310 156 GFDMLCSGRDKIETPEQFKQAEETVKKL------DLDGLVVIGGDDS-----NTNACLLAENFRSKDMKT 214 (570)
Q Consensus 156 G~~~lGs~R~k~~~~e~~~~~~~~l~k~------~Id~LviIGGddS-----~t~A~~Lae~~~~~g~~i 214 (570)
- .++-. ..| +.-++++|++.+.+. +.+-++++|+-|. +.+...|..+....+.++
T Consensus 92 ~-~i~~~-peK--D~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GGR~DH~Lani~lL~~~~~~~~~~i 157 (247)
T 3s4y_A 92 C-ELIST-PDQ--DHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFQATHITPFPI 157 (247)
T ss_dssp C-EEEEC-CCT--TSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSSSHHHHHHHHHHHHHGGGTCSSCE
T ss_pred C-EEEEC-CCC--CcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCCchhHHHHHHHHHHHHhhccCceE
Confidence 4 45532 233 344688888887664 7899999999664 555566655433234443
No 117
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.78 E-value=1e+02 Score=30.64 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcCCC-----EEEEecCc--hhHHHHHHHHHHHhcCCCCceEEEee
Q 008310 171 EQFKQAEETVKKLDLD-----GLVVIGGD--DSNTNACLLAENFRSKDMKTRVIGCP 220 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id-----~LviIGGd--dS~t~A~~Lae~~~~~g~~i~VIgVP 220 (570)
..++.+...++...-. -++++||+ ++-.....|++.++++|+.+.|||+=
T Consensus 89 ~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG 145 (268)
T 4b4t_W 89 TALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFG 145 (268)
T ss_dssp HHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEES
T ss_pred HHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 4577888888754332 36666765 35566788888889999999999875
No 118
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=29.23 E-value=81 Score=32.22 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHH
Q 008310 169 TPEQFKQAEETVKKL----DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKT 244 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~----~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~ 244 (570)
+++++.++.+.++++ +.||+||.=|.|||.-.+.+-.++.+. +.+||-.=.=.-- ..++.|-..|.
T Consensus 66 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~~--~kPVVlTGAmrP~--------~~~~sDg~~NL 135 (332)
T 2wlt_A 66 NEEIWFKLAQRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLHS--TKPVVLVGAMRNA--------SSLSADGALNL 135 (332)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCCEEEEECCSSSHHHHHHHHHHHCCC--SSCEEEECCSSCT--------TSTTCSHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHHHHHHhCC--CCCEEEECCCCCC--------CCCCcchHHHH
Confidence 678888887777765 699999999999997755555555543 3455543211111 24556666666
Q ss_pred HHHH
Q 008310 245 FSEV 248 (570)
Q Consensus 245 ~se~ 248 (570)
+.-+
T Consensus 136 ~~Av 139 (332)
T 2wlt_A 136 YEAV 139 (332)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 119
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=28.96 E-value=97 Score=31.78 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHH----cCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 169 TPEQFKQAEETVKK----LDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 169 ~~e~~~~~~~~l~k----~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
+++++.++.+.+++ -+.|++||.=|.|||.-.+.+-.+.. +.+.+||-.
T Consensus 71 t~~~w~~la~~i~~~l~~~~~dGvVItHGTDTm~~TA~~L~~~l--~~~kPVVlT 123 (337)
T 4pga_A 71 TNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLNLVQ--KTDKPIVVV 123 (337)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCSEEEEECCSTTHHHHHHHHHHHC--CCCSCEEEE
T ss_pred CHHHHHHHHHHHHHHhhccCCCeEEEECCCccHHHHHHHHHHHc--CCCCCEEEe
Confidence 67888888888877 47999999999999976555445544 344455544
No 120
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=28.95 E-value=1.4e+02 Score=28.46 Aligned_cols=95 Identities=14% Similarity=0.175 Sum_probs=49.6
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeC---CcccccCCCEEECChhhhccccccCCceecccCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRG---GPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRD 165 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~---G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~ 165 (570)
.++||+|+.||.. +| ...++++++...-..+|.++.- ...|+ + +...=|-...--.+.
T Consensus 6 ~~~ri~vl~SG~g----sn-l~all~~~~~~~l~~~I~~Visn~~~a~~l-------------~-~A~~~gIp~~~~~~~ 66 (209)
T 4ds3_A 6 KRNRVVIFISGGG----SN-MEALIRAAQAPGFPAEIVAVFSDKAEAGGL-------------A-KAEAAGIATQVFKRK 66 (209)
T ss_dssp CCEEEEEEESSCC----HH-HHHHHHHHTSTTCSEEEEEEEESCTTCTHH-------------H-HHHHTTCCEEECCGG
T ss_pred CCccEEEEEECCc----HH-HHHHHHHHHcCCCCcEEEEEEECCcccHHH-------------H-HHHHcCCCEEEeCcc
Confidence 3579999999983 22 4455565433211346666552 11221 1 111113222222222
Q ss_pred CCCChHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHH
Q 008310 166 KIETPEQF-KQAEETVKKLDLDGLVVIGGDDSNTNACLL 203 (570)
Q Consensus 166 k~~~~e~~-~~~~~~l~k~~Id~LviIGGddS~t~A~~L 203 (570)
.+.+.+.+ +.+.+.+++++.|.+|+.| .+-.-....|
T Consensus 67 ~~~~r~~~d~~~~~~l~~~~~Dliv~ag-y~~il~~~~l 104 (209)
T 4ds3_A 67 DFASKEAHEDAILAALDVLKPDIICLAG-YMRLLSGRFI 104 (209)
T ss_dssp GSSSHHHHHHHHHHHHHHHCCSEEEESS-CCSCCCHHHH
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEec-cccCcCHHHH
Confidence 33445555 4678899999999888876 4433333444
No 121
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=28.24 E-value=3e+02 Score=26.57 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=24.8
Q ss_pred CccEEEEEec--CCCCchhhHHHHHHHHHHHHhcC
Q 008310 89 KSLKIGVVLS--GGQAPGGHNVIAGIFDYLQERTK 121 (570)
Q Consensus 89 ~~~~IGIv~s--GG~aPG~nnvI~gl~~~l~~~~~ 121 (570)
++.+||+++. |..+|-+..+..|+-.++...+.
T Consensus 3 ~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~ 37 (358)
T 3hut_A 3 LALLLGYELPLTGANAAYGRVFQEAARLQLDRFNA 37 (358)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHh
Confidence 4689999986 55567778888888877776653
No 122
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=28.20 E-value=3.8e+02 Score=25.13 Aligned_cols=89 Identities=10% Similarity=0.041 Sum_probs=54.4
Q ss_pred ccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCC
Q 008310 90 SLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIET 169 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~ 169 (570)
..+||+++.....|-...++.|+-+++++. +.++. ++..+. .+
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--g~~~~--------------------------------~~~~~~---~~ 46 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEF--NLNAS--------------------------------QVGPSS---TD 46 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--TEEEE--------------------------------EECCSS---SC
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHHc--CCEEE--------------------------------EECCCC---CC
Confidence 479999998777788888999998887653 21110 011111 13
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 170 PEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 170 ~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
++.....++.+...++|++|+.+.+.+.. ...+ +.+.+.+ ++||.+
T Consensus 47 ~~~~~~~~~~l~~~~vdgiii~~~~~~~~-~~~~-~~~~~~~--ipvV~~ 92 (303)
T 3d02_A 47 APQQVKIIEDLIARKVDAITIVPNDANVL-EPVF-KKARDAG--IVVLTN 92 (303)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSCHHHH-HHHH-HHHHHTT--CEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCChHHH-HHHH-HHHHHCC--CeEEEE
Confidence 44455667778889999999988754321 1222 3333344 567754
No 123
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=27.13 E-value=60 Score=30.43 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 222 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 222 (570)
+++.+.+.++..++.+++.+|.+.|-. ..-.-.++- ....+|||||-.
T Consensus 47 ~p~~~~~~~~~a~~~g~~ViIa~AG~a-a~LpgvvA~-----~t~~PVIgVP~~ 94 (174)
T 3lp6_A 47 TPEAMFSYARGAAARGLEVIIAGAGGA-AHLPGMVAA-----ATPLPVIGVPVP 94 (174)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEEESS-CCHHHHHHH-----HCSSCEEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCch-hhhHHHHHh-----ccCCCEEEeeCC
Confidence 678899999999999999666554432 222233332 246799999964
No 124
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=27.07 E-value=3.5e+02 Score=26.57 Aligned_cols=129 Identities=11% Similarity=0.025 Sum_probs=0.0
Q ss_pred CCCccEEEEEec--CCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCC
Q 008310 87 ENKSLKIGVVLS--GGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGR 164 (570)
Q Consensus 87 ~~~~~~IGIv~s--GG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R 164 (570)
..++.+||+++. |..++-+..+..|+-.++...|. .|-+.+.-++|. +.+.++
T Consensus 4 a~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~-----------~ggi~G~~i~l~------~~D~~~-------- 58 (392)
T 3lkb_A 4 GQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANE-----------RKLVPGVVFNCV------VRDDQY-------- 58 (392)
T ss_dssp CCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHH-----------HTSSTTEEEEEE------EEECTT--------
T ss_pred cCCceEEEEEecccCchhhcChhHHHHHHHHHHHHHh-----------cCCcCCeEeEEE------EecCCC--------
Q ss_pred CCCCChHHHHHHHHHHHHc-CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecc----ccCCCCCCCCCCCCChh
Q 008310 165 DKIETPEQFKQAEETVKKL-DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT----IDGDLKCKDVPISFGFD 239 (570)
Q Consensus 165 ~k~~~~e~~~~~~~~l~k~-~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT----IDNDL~~~~ie~s~GFd 239 (570)
+++.-.++++.+... +++++|..+-..+...+..+.+. ++++|. |-+ .|.......+-.++...
T Consensus 59 ----~~~~~~~~~~~li~~~~V~~iig~~s~~~~~~~~~~~~~------~iP~i~-~~~~~~~~~~~~~~~~f~~~~~~~ 127 (392)
T 3lkb_A 59 ----NNANTQRFFEEAVDRFKIPVFLSYATGANLQLKPLIQEL------RIPTIP-ASMHIELIDPPNNDYIFLPTTSYS 127 (392)
T ss_dssp ----CHHHHHHHHHHHHHTTCCSCEEECCHHHHHHHHHHHHHH------TCCEEE-SCCCGGGGSSSSCTTBCEEECCHH
T ss_pred ----CHHHHHHHHHHHHhhcCcEEEEeCCcHHHHHHHHHHHhC------CceEEe-cccChhhccCCCCCceEecCCChH
Q ss_pred hHHHHHHHHHHH
Q 008310 240 TACKTFSEVIGN 251 (570)
Q Consensus 240 TA~k~~se~I~n 251 (570)
.....+++.+..
T Consensus 128 ~~~~~~~~~l~~ 139 (392)
T 3lkb_A 128 EQVVALLEYIAR 139 (392)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 125
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=26.99 E-value=2.1e+02 Score=27.63 Aligned_cols=88 Identities=8% Similarity=-0.058 Sum_probs=53.3
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCCh
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETP 170 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~ 170 (570)
++|||++..-..|=...++.|+-++++.. +.++. +.+.+. .+.
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~--g~~~~--------------------------------~~~~~~---~d~ 46 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKAL--GIDVT--------------------------------YDGPTE---PSV 46 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHH--TCEEE--------------------------------ECCCSS---CCH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHh--CCEEE--------------------------------EECCCC---CCH
Confidence 68999998777788888888888877653 21111 000010 133
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
+.....++.+...++|+||+.+-+.+.. ...+ +.+.+.| ++||.+
T Consensus 47 ~~q~~~i~~li~~~vdgiii~~~~~~~~-~~~~-~~a~~~g--ipvV~~ 91 (316)
T 1tjy_A 47 SGQVQLVNNFVNQGYDAIIVSAVSPDGL-CPAL-KRAMQRG--VKILTW 91 (316)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSSSTT-HHHH-HHHHHTT--CEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCHHHH-HHHH-HHHHHCc--CEEEEe
Confidence 4455667778889999999988765421 1122 2233334 678766
No 126
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=26.85 E-value=4.3e+02 Score=25.35 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=58.3
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIE 168 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~ 168 (570)
+..+|||++.. ..|-...++.|+-++++.. .+.++. +..+. .
T Consensus 5 ~~~~Igvi~~~-~~~~~~~~~~gi~~~a~~~-~g~~l~---------------------------------i~~~~---~ 46 (325)
T 2x7x_A 5 PHFRIGVAQCS-DDSWRHKMNDEILREAMFY-NGVSVE---------------------------------IRSAG---D 46 (325)
T ss_dssp -CCEEEEEESC-CSHHHHHHHHHHHHHHTTS-SSCEEE---------------------------------EEECT---T
T ss_pred CCeEEEEEecC-CCHHHHHHHHHHHHHHHHc-CCcEEE---------------------------------EeCCC---C
Confidence 45799999977 6666677788887765321 022211 00000 1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
+++.....++.+...++||+|+.+.+.+... ..+ +.+.+.+ ++||.+ |++........++++|-
T Consensus 47 ~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~ 110 (325)
T 2x7x_A 47 DNSKQAEDVHYFMDEGVDLLIISANEAAPMT-PIV-EEAYQKG--IPVILV----DRKILSDKYTAYIGADN 110 (325)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCSSHHHHH-HHH-HHHHHTT--CCEEEE----SSCCSSSCSSEEEEECH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-HHH-HHHHHCC--CeEEEe----CCCCCCcceeEEEecCH
Confidence 2344556677778899999999987654211 122 3344444 567765 44443221113566664
No 127
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=26.48 E-value=81 Score=32.18 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHc----CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHH
Q 008310 169 TPEQFKQAEETVKKL----DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKT 244 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~----~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~ 244 (570)
+++++.++.+.++++ +.||+||.=|.|||.-.+.+-.++.+. +.+||-.=.=.-- ..++.|-..|.
T Consensus 64 t~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~~--~kPVVlTGAmrP~--------~~~~sDg~~NL 133 (330)
T 1wsa_A 64 TGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAFFLNLTVKS--QKPVVLVGAMRPG--------SSMSADGPMNL 133 (330)
T ss_dssp CHHHHHHHHHHHHHHHHSTTCCCEEEECCSSSHHHHHHHHHHHCCC--SSCEEEECCSSCT--------TSTTCSHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEEcCcchHHHHHHHHHHHcCC--CCCEEEeCCCCCC--------CCCCCchHHHH
Confidence 678887777777664 799999999999997755555555543 3455543211111 24566666666
Q ss_pred HHHH
Q 008310 245 FSEV 248 (570)
Q Consensus 245 ~se~ 248 (570)
+.-+
T Consensus 134 ~~Av 137 (330)
T 1wsa_A 134 YNAV 137 (330)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 128
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=26.10 E-value=1.4e+02 Score=30.07 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=37.9
Q ss_pred HHhhhcCCeeEEEEecCC-CCcHHHHHhhhhcCCcEEEEC-----------CchhhhhcchHHHHH
Q 008310 254 TDARSSGKYYHFIRLMGR-AASHITLECALQTHPNIAIIG-----------EEIAAKKLTLKNVTD 307 (570)
Q Consensus 254 ~Da~S~~k~~~fIevMGR-~ag~lAle~aLat~pnivlIp-----------Ee~~~~~~tL~~iv~ 307 (570)
...+..++.+.||=+||- |.||++|--.-.. +|.++++ |+...-..||+.-.+
T Consensus 18 ~~~~~~g~~Ig~VPTMGaLH~GHlsLv~~Ar~-~d~VVVSIFVNP~QF~~~EDl~~YPRtle~D~~ 82 (285)
T 3mxt_A 18 KDWKSHQLSIGYVPTMGFLHDGHLSLVKHAKT-QDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIK 82 (285)
T ss_dssp HHHHHTTCCEEEEEECSSCCHHHHHHHHHHTT-SSEEEEEECCCGGGCCTTSCTTTSCCCHHHHHH
T ss_pred HHHHHcCCeEEEEcCCCcccHHHHHHHHHHHh-CCEEEEEeccCccccCCchhhhcCCCCHHHHHH
Confidence 344456678999999996 8999999666555 8888873 555555567665554
No 129
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=26.03 E-value=96 Score=32.08 Aligned_cols=71 Identities=21% Similarity=0.306 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHH
Q 008310 169 TPEQFKQAEETVKKL--DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFS 246 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~--~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~s 246 (570)
+++++.++.+.++++ +.||+||.=|.|||.-.+.+-.++.+ +.+.+||-.=.=.-- ..++.|-..|.+.
T Consensus 84 t~~~w~~la~~I~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~-~~~kPVVlTGAmrP~--------~~~~sDg~~NL~~ 154 (358)
T 2him_A 84 TPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALSFMLE-NLGKPVIVTGSQIPL--------AELRSDGQINLLN 154 (358)
T ss_dssp CHHHHHHHHHHHHHHGGGCSEEEEECCSTTHHHHHHHHHHHEE-TCCSCEEEECCSSCT--------TSTTCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEecCchHHHHHHHHHHHHHh-cCCCCEEEeCCCCCC--------cCCCcchHHHHHH
Confidence 678888888888776 79999999999999765555455443 233445543221111 2455666666655
Q ss_pred HH
Q 008310 247 EV 248 (570)
Q Consensus 247 e~ 248 (570)
-+
T Consensus 155 Av 156 (358)
T 2him_A 155 AL 156 (358)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 130
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=25.03 E-value=3.1e+02 Score=27.30 Aligned_cols=122 Identities=11% Similarity=0.016 Sum_probs=60.4
Q ss_pred CChhHHHhhCCcccCCC--eeEEecCCccccccCCCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 008310 55 GDPEEIKKLFPKFYGQP--SARLVECDPMACTLMENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGP 132 (570)
Q Consensus 55 ~~~~~i~~~fp~~~~~~--~~~~~~~~~~~~~~~~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~ 132 (570)
.+.+++++-|..+...- -+++.. ...++||+|+.||.- +| +..++++.+.-.-..++.++.---
T Consensus 61 ~~~~~L~~~f~~la~~~~m~~~l~~---------~~~~~ri~vl~Sg~g----~n-l~~ll~~~~~g~l~~~i~~Visn~ 126 (288)
T 3obi_A 61 IPLASLRTGFGVIAAKFTMGWHMRD---------RETRRKVMLLVSQSD----HC-LADILYRWRVGDLHMIPTAIVSNH 126 (288)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEEE---------TTSCEEEEEEECSCC----HH-HHHHHHHHHTTSSCEEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHcCCEEEeec---------cCCCcEEEEEEcCCC----CC-HHHHHHHHHCCCCCeEEEEEEcCC
Confidence 34677776665443321 123322 234789999999983 33 345555543322224555544211
Q ss_pred -ccccCCCEEECChhhhccccccCCceecccCCCCCCChHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 008310 133 -AGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQF-KQAEETVKKLDLDGLVVIGGDDSNTNACLLAE 205 (570)
Q Consensus 133 -~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~~-~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae 205 (570)
.. +..+...-|-...--.+.+ .+.+.+ +++++.+++++.|.+|+.| .+-.-....|..
T Consensus 127 p~~-------------~~~~A~~~gIp~~~~~~~~-~~r~~~~~~~~~~l~~~~~Dlivlag-y~~il~~~~l~~ 186 (288)
T 3obi_A 127 PRE-------------TFSGFDFGDIPFYHFPVNK-DTRRQQEAAITALIAQTHTDLVVLAR-YMQILSDEMSAR 186 (288)
T ss_dssp CGG-------------GSCCTTTTTCCEEECCCCT-TTHHHHHHHHHHHHHHHTCCEEEESS-CCSCCCHHHHHH
T ss_pred Chh-------------HHHHHHHcCCCEEEeCCCc-ccHHHHHHHHHHHHHhcCCCEEEhhh-hhhhCCHHHHhh
Confidence 11 1122222232222111112 233333 5678999999999766664 554444455544
No 131
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=24.99 E-value=4.3e+02 Score=24.75 Aligned_cols=105 Identities=12% Similarity=0.183 Sum_probs=62.5
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
.+..+|||++.....|-...++.|+-+.++.. |.++. +..+.
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~--- 59 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQR--GYQLL---------------------------------IACSE--- 59 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC--CCEEE---------------------------------EEcCC---
Confidence 34579999998877888888999998887642 33221 00000
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
.+.+.....++.+...++||+|+.+.+.+.. . +.+.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 60 ~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~--~-~~~~~~~~~--iPvV~~----~~~~~~~~~-~~V~~d~ 122 (293)
T 2iks_A 60 DQPDNEMRCIEHLLQRQVDAIIVSTSLPPEH--P-FYQRWANDP--FPIVAL----DRALDREHF-TSVVGAD 122 (293)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSSCTTC--H-HHHTTTTSS--SCEEEE----ESCCCTTTC-EEEEECH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCcH--H-HHHHHHhCC--CCEEEE----CCccCcCCC-CEEEecC
Confidence 1234445667788889999999998765421 1 223333334 567654 444332222 3566654
No 132
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=24.72 E-value=4.8e+02 Score=25.22 Aligned_cols=30 Identities=3% Similarity=-0.182 Sum_probs=25.6
Q ss_pred ccEEEEEecCCCC-chhhHHHHHHHHHHHHh
Q 008310 90 SLKIGVVLSGGQA-PGGHNVIAGIFDYLQER 119 (570)
Q Consensus 90 ~~~IGIv~sGG~a-PG~nnvI~gl~~~l~~~ 119 (570)
..+||+++.+-.. |=...++.|+-++++..
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~ 33 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL 33 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc
Confidence 4699999999877 88999999999987764
No 133
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=24.59 E-value=4.6e+02 Score=25.25 Aligned_cols=116 Identities=14% Similarity=0.157 Sum_probs=63.0
Q ss_pred ccEEEEEecCCCCchh----------hHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhcccc-ccCCce
Q 008310 90 SLKIGVVLSGGQAPGG----------HNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYR-NQGGFD 158 (570)
Q Consensus 90 ~~~IGIv~sGG~aPG~----------nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~-n~GG~~ 158 (570)
++..+||+.||..--+ -.+|.-+++.++... -.+|+-..+ .+.+..+. ..|. .
T Consensus 17 M~~~aIIlA~G~stRlp~K~L~~i~GkPmi~~~l~~l~~~~-i~~IvV~t~--------------~~~i~~~~~~~g~-~ 80 (264)
T 3k8d_A 17 MSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESG-AERIIVATD--------------HEDVARAVEAAGG-E 80 (264)
T ss_dssp -CCEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEES--------------CHHHHHHHHHTTC-E
T ss_pred CceEEEEEcCCCCCCCCCcceeeECCeEHHHHHHHHHHhCC-CCEEEEECC--------------HHHHHHHHHHcCC-E
Confidence 4568899999887533 357777777776543 345543331 12233222 2233 2
Q ss_pred ecccCCCCCCChHHHHHHHHHHHHcCCCEEEEecCchh---HHHHHHHHHHHhcCCCCceEEEeec
Q 008310 159 MLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDS---NTNACLLAENFRSKDMKTRVIGCPK 221 (570)
Q Consensus 159 ~lGs~R~k~~~~e~~~~~~~~l~k~~Id~LviIGGddS---~t~A~~Lae~~~~~g~~i~VIgVPK 221 (570)
++-+........+.+..+++.+...+-|.++++-||-- -.....|.+.+.+.+..+.+.++|.
T Consensus 81 v~~~~~~~~~Gt~~i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v 146 (264)
T 3k8d_A 81 VCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPI 146 (264)
T ss_dssp EEECCTTCCSHHHHHHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEEC
T ss_pred EEEecCCCCCCHHHHHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEc
Confidence 33222222211222333333332125689999999963 3455566677776677778888875
No 134
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=24.33 E-value=95 Score=31.91 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEE
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVI 217 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VI 217 (570)
.+++.+++.+-+ ..|.++||||-.|. |..+|.|-+++.|.+.-.|
T Consensus 213 ~~RQ~av~~lA~-~vD~miVVGg~nSS-NT~rL~eia~~~g~~ty~I 257 (328)
T 3szu_A 213 TNRQEAVRALAE-QAEVVLVVGSKNSS-NSNRLAELAQRMGKRAFLI 257 (328)
T ss_dssp HHHHHHHHHHHH-HCSEEEEECCTTCH-HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHH-hCCEEEEeCCCCCc-hHHHHHHHHHHhCCCEEEe
Confidence 455566666655 39999999997764 4578889888877543333
No 135
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=24.03 E-value=1.7e+02 Score=28.86 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=52.6
Q ss_pred EEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChHHHH
Q 008310 95 VVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFK 174 (570)
Q Consensus 95 Iv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~~~ 174 (570)
||++|=-=||+-|++.-+.+ ... .+++++++|+- +.+. +++.++
T Consensus 175 vvitGCsH~GI~Niv~~a~~----~~g-~~i~~viGGfH-------------------------L~~~------~~~~l~ 218 (267)
T 3h3e_A 175 VVITGCSHRGIDNILLDIAE----TFN-ERIKMVVGGFH-------------------------LLKS------SDDEIE 218 (267)
T ss_dssp EEEESCCTTCHHHHHHHHHT----TCS-SCEEEEEEECC-------------------------CTTS------CHHHHH
T ss_pred EEEeCCCCcCHHHHHHHHHH----HhC-CCceEEEeccc-------------------------cCCC------CHHHHH
Confidence 66777777899988877653 333 78999986653 3221 568899
Q ss_pred HHHHHHHHcCCCEEEEecCchhHHHHHHHHHHH
Q 008310 175 QAEETVKKLDLDGLVVIGGDDSNTNACLLAENF 207 (570)
Q Consensus 175 ~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~ 207 (570)
++++.+++++++-++..==.+.. ..+.|++.+
T Consensus 219 ~tl~~l~~~~~~~i~~~HCTg~~-a~~~L~~~l 250 (267)
T 3h3e_A 219 KIVKAFNELGVETVVPCHCTGER-AVDIFKREF 250 (267)
T ss_dssp HHHHHHHHTTCCEEEEETTSCHH-HHHHHHHHC
T ss_pred HHHHHHHhcCCCEEEEECCCCHH-HHHHHHHHC
Confidence 99999999999977665433333 445566654
No 136
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=23.64 E-value=41 Score=30.29 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCC
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKC 229 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~ 229 (570)
+++.+++.+++.+.+-++||||-.-...+..+.+ .+.+--+|..+++|-.-
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~~F 131 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDTYY 131 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSEEC
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCEEC
Confidence 4677788888878888999999877666554322 46788899999888643
No 137
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=23.46 E-value=1.4e+02 Score=28.38 Aligned_cols=72 Identities=14% Similarity=0.220 Sum_probs=50.1
Q ss_pred CCCccEEEEEecCCCCchhh-HHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCC
Q 008310 87 ENKSLKIGVVLSGGQAPGGH-NVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRD 165 (570)
Q Consensus 87 ~~~~~~IGIv~sGG~aPG~n-nvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~ 165 (570)
..+..+|||++..-..|-.. .++.|+-+++++. |.++.-+. ..
T Consensus 10 ~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~------------------------~~---------- 53 (301)
T 3miz_A 10 SSRSNTFGIITDYVSTTPYSVDIVRGIQDWANAN--GKTILIAN------------------------TG---------- 53 (301)
T ss_dssp --CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT--TCEEEEEE------------------------CT----------
T ss_pred hCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC--CCEEEEEe------------------------CC----------
Confidence 34557999999888778888 9999999887653 44433111 00
Q ss_pred CCCChHHHHHHHHHHHHcCCCEEEEecCchh
Q 008310 166 KIETPEQFKQAEETVKKLDLDGLVVIGGDDS 196 (570)
Q Consensus 166 k~~~~e~~~~~~~~l~k~~Id~LviIGGddS 196 (570)
.+.+...+.++.+...++||+|+.+.+.+
T Consensus 54 --~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 82 (301)
T 3miz_A 54 --GSSEREVEIWKMFQSHRIDGVLYVTMYRR 82 (301)
T ss_dssp --TCHHHHHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred --CChHHHHHHHHHHHhCCCCEEEEecCCcc
Confidence 12345567788889999999999987654
No 138
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=23.38 E-value=81 Score=31.88 Aligned_cols=104 Identities=16% Similarity=0.222 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecc--cCCCCCCChHHHHHHHHHHHHcCCC
Q 008310 109 IAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLC--SGRDKIETPEQFKQAEETVKKLDLD 186 (570)
Q Consensus 109 I~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lG--s~R~k~~~~e~~~~~~~~l~k~~Id 186 (570)
++..++.++...| ..+-+-.|..|..... |.+....+.+.=|...+- |||. .+.+.++..+..+..++|+
T Consensus 41 l~~~~~~l~~l~p--~fvsVT~gagg~~r~~----t~~~a~~i~~~~g~~~v~Hltc~~--~~~~~l~~~L~~~~~~GI~ 112 (304)
T 3fst_A 41 LWNSIDRLSSLKP--KFVSVTYGANSGERDR----THSIIKGIKDRTGLEAAPHLTCID--ATPDELRTIARDYWNNGIR 112 (304)
T ss_dssp HHHHHHHHHTTCC--SEEEECCCTTSSCHHH----HHHHHHHHHHHHCCCEEEEEESTT--SCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCC--CEEEEeeCCCCcchhH----HHHHHHHHHHHhCCCeeEEeecCC--CCHHHHHHHHHHHHHCCCC
Confidence 4455666665555 3466777777754333 223334444432332222 5666 3778899999999999999
Q ss_pred EEEEecCchh------HHHHHHHHHHHhcC-CCCceEEEee
Q 008310 187 GLVVIGGDDS------NTNACLLAENFRSK-DMKTRVIGCP 220 (570)
Q Consensus 187 ~LviIGGddS------~t~A~~Lae~~~~~-g~~i~VIgVP 220 (570)
.++++.||-. ...|..|-+++++. +..+.|.+-|
T Consensus 113 nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yP 153 (304)
T 3fst_A 113 HIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYP 153 (304)
T ss_dssp EEEEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECT
T ss_pred EEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Confidence 9999999843 44477787877653 4545555555
No 139
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=23.35 E-value=1e+02 Score=31.37 Aligned_cols=70 Identities=11% Similarity=0.188 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHc--CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHHH
Q 008310 169 TPEQFKQAEETVKKL--DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFS 246 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~--~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~s 246 (570)
+++++.++.+.++++ +.||+||.=|.|||.-.+.+-.++.. +.+.+||-.=.=.-- ..++.|-..|.+.
T Consensus 56 t~~~w~~la~~I~~~~~~~dG~VItHGTDTmeeTA~~Ls~ll~-~~~kPVVlTGAqrP~--------~~~~sDg~~NL~~ 126 (328)
T 1wls_A 56 QPSDWERLAKEIEKEVWEYDGIVITHGTDTMAYSASMLSFMLR-NPPIPIVLTGSMLPI--------TEKNSDAPFNLRT 126 (328)
T ss_dssp CHHHHHHHHHHHHHHTTTCSEEEEECCGGGHHHHHHHHHHHEE-SCSSEEEEECCSSCT--------TSSSCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCeEEEEcCCchHHHHHHHHHHHHh-CCCCCEEEECCCCCC--------CCCCCchHHHHHH
Confidence 688888888888776 79999999999999775555554322 334456543221111 2455666666654
Q ss_pred H
Q 008310 247 E 247 (570)
Q Consensus 247 e 247 (570)
-
T Consensus 127 A 127 (328)
T 1wls_A 127 A 127 (328)
T ss_dssp H
T ss_pred H
Confidence 4
No 140
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=23.22 E-value=4.5e+02 Score=24.66 Aligned_cols=46 Identities=11% Similarity=0.247 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHc-CCCEEEEecCchhHHHHHHHHHHHhcCCC--CceEEEe
Q 008310 170 PEQFKQAEETVKKL-DLDGLVVIGGDDSNTNACLLAENFRSKDM--KTRVIGC 219 (570)
Q Consensus 170 ~e~~~~~~~~l~k~-~Id~LviIGGddS~t~A~~Lae~~~~~g~--~i~VIgV 219 (570)
++.++.+.+.++++ +++++++. +|.+ |.-+.+.+++.|. ++.|||+
T Consensus 172 ~~~~~~~~~~l~~~~~~~ai~~~--~d~~--a~g~~~al~~~g~~~di~vig~ 220 (305)
T 3g1w_A 172 LHSRRVAHQLLEDYPNLAGIFAT--EANG--GVGVGDAVRLESRAGEIQIISF 220 (305)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEES--SHHH--HHHHHHHHHHTTCTTTSEEEEE
T ss_pred HHHHHHHHHHHHhCCCceEEEEC--CCcc--hhhHHHHHHhcCCCCCeEEEEe
Confidence 34455666666665 57776653 3332 2223344555565 4566653
No 141
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=23.14 E-value=49 Score=29.61 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCCCceEEEeeccccCCC
Q 008310 200 ACLLAENFRSKDMKTRVIGCPKTIDGDL 227 (570)
Q Consensus 200 A~~Lae~~~~~g~~i~VIgVPKTIDNDL 227 (570)
...|.+.+.+.+...-|||.|+++||..
T Consensus 42 ~~~l~~li~e~~v~~iVvGlP~~mdGt~ 69 (138)
T 1nu0_A 42 WNIIERLLKEWQPDEIIVGLPLNMDGTE 69 (138)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEECTTSCB
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCcCc
Confidence 3455555555577788999999999854
No 142
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=23.08 E-value=1.9e+02 Score=29.16 Aligned_cols=168 Identities=15% Similarity=0.170 Sum_probs=92.9
Q ss_pred ECChhhhccccccCCceecccCCCCCCChHHHHHHHHHHHHcCCCEEEEec----CchhHHHHHHHHHHHhcCCCCceEE
Q 008310 142 ELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIG----GDDSNTNACLLAENFRSKDMKTRVI 217 (570)
Q Consensus 142 eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~~~~~~~~l~k~~Id~LviIG----GddS~t~A~~Lae~~~~~g~~i~VI 217 (570)
+|+.+++......++. +-.|+ .+ ++++|.++.+.+.+. =+.+++|. =.||..+|...++.+ .+.++.||
T Consensus 76 di~~~efy~~m~~~~~-~p~TS--qP-s~~~~~~~fe~l~~~-~~~Ii~I~iSS~LSGTy~sA~~Aa~~~--~~~~I~Vi 148 (315)
T 3fys_A 76 ELDWKSFYEEVKKHNE-LPTTS--QP-PIGELVALYEELGKS-YDAVISIHLSSGISGTFSSAAAADSMV--DNIDVYPF 148 (315)
T ss_dssp TBCHHHHHHHHHTTTC-CCEEE--CC-CHHHHHHHHHHHTTT-CSEEEEEESCTTTCSHHHHHHHGGGGC--SSCEEEEE
T ss_pred CCCHHHHHHHHHhCCC-CcccC--CC-CHHHHHHHHHHHHhc-CCcEEEEeCCCcHhHHHHHHHHHHHhC--CCCCEEEE
Confidence 4666655544444442 33343 23 678898888888766 56666653 467787777776653 23334444
Q ss_pred EeeccccCCCCCCCCCCCCChhhHHHHHHHHHHHHH-------H---HhhhcCCeeEEEEec------CCCCcHHHH-Hh
Q 008310 218 GCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVM-------T---DARSSGKYYHFIRLM------GRAASHITL-EC 280 (570)
Q Consensus 218 gVPKTIDNDL~~~~ie~s~GFdTA~k~~se~I~ni~-------~---Da~S~~k~~~fIevM------GR~ag~lAl-e~ 280 (570)
|.-. .|.|..-.+...++++.+=. . +.....+.||+++.. ||=+.--|+ ..
T Consensus 149 ------DS~~------~s~g~g~lv~~Aa~l~~~G~~s~eeI~~~l~~~~~~~~~~f~v~~L~yL~kGGRIs~~~a~ig~ 216 (315)
T 3fys_A 149 ------DSEI------SCLAQGFYALKAAELIKNGASSPEDIIKELEEMKKTVRAYFMVDDLAHLQRGGRLSSAQAFIGS 216 (315)
T ss_dssp ------ECSS------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTCEEEEECSCTHHHHHHTTTHHHHHHHSS
T ss_pred ------CCch------hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccEEEEEECchHHHHhCCcchHHHHHHHh
Confidence 3222 26666666666555543221 2 223333456777654 554443332 23
Q ss_pred hhhcCCcEEEECCch--hhhhcchHHHHHHHHHHHHHHHHcCCCeEEEEE
Q 008310 281 ALQTHPNIAIIGEEI--AAKKLTLKNVTDYITDIICKRSEAGYNFGVVLI 328 (570)
Q Consensus 281 aLat~pnivlIpEe~--~~~~~tL~~iv~~i~d~I~~R~~~gk~~gvIli 328 (570)
.|.-.|=+.+--++. ..+-.+.+..++.+.+.+.++...++++-+.+.
T Consensus 217 lL~IKPIl~~~dG~l~~~~KvRg~kka~~~l~~~~~~~~~~~~~~~v~I~ 266 (315)
T 3fys_A 217 LLKVKPILHFDNKVIVPFEKIRTRKKAISRIYELLDEDASKGLPMRAAVI 266 (315)
T ss_dssp CCCSCEEEEEETTEEEEEEECSCHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred hcCcEEEEEEECCEEEEEeeeccHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 355567666543332 233345666777788888887765666644443
No 143
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=23.02 E-value=5.1e+02 Score=24.93 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCC
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDM 212 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~ 212 (570)
+++..+.+++.++++++|+++. +-+.....++.+++.+.+.|+
T Consensus 57 ~~~~~~~l~~~~~~~~~d~vi~-~~~~~~~~~a~~~~~l~~~g~ 99 (331)
T 2pn1_A 57 EVEYIDHLLTLCQDEGVTALLT-LIDPELGLLAQATERFQAIGV 99 (331)
T ss_dssp STTHHHHHHHHHHHHTCCEEEE-SSHHHHHHHHHTHHHHHTTTC
T ss_pred ChhHHHHHHHHHHHcCCCEEEe-CCchhHHHHHHHHHHHHhCCc
Confidence 3445788899999999998765 444444455566777765553
No 144
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=22.86 E-value=1.3e+02 Score=32.16 Aligned_cols=70 Identities=17% Similarity=0.112 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHc---CCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhhHHHHH
Q 008310 169 TPEQFKQAEETVKKL---DLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTF 245 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~---~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdTA~k~~ 245 (570)
+++++.++.+.++++ +.||+||.=|.|||.-.+.+-.++... +.+||-.=.=.-- ..++.|-..|.+
T Consensus 149 tp~~w~~La~~I~~~~~~~~DG~VItHGTDTMeeTA~~Lsl~l~~--~KPVVlTGAqrP~--------~~~~sDg~~NL~ 218 (435)
T 2d6f_A 149 KPEYWVETARAVYGEIKDGADGVVVAHGTDTMHYTSAALSFMLRT--PVPVVFTGAQRSS--------DRPSSDASLNIQ 218 (435)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEEECCTTTHHHHHHHHHHHEEC--SSCEEEECCSSCT--------TSTTCTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCeEEEEcCcchHHHHHHHHHHHhCC--CCCEEEECCCCCC--------CCCCcchHHHHH
Confidence 678887777777665 899999999999997755554554433 3455543221111 245667666666
Q ss_pred HHH
Q 008310 246 SEV 248 (570)
Q Consensus 246 se~ 248 (570)
..+
T Consensus 219 ~Av 221 (435)
T 2d6f_A 219 CSV 221 (435)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 145
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=22.41 E-value=64 Score=30.11 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=32.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 222 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 222 (570)
+++.+.+.++..++.+++.+|.+.|-. ..-.-.++- ....+|||||-.
T Consensus 46 ~p~~~~~~~~~a~~~g~~ViIa~AG~a-a~LpgvvA~-----~t~~PVIgVP~~ 93 (169)
T 3trh_A 46 TPKETVEFVENADNRGCAVFIAAAGLA-AHLAGTIAA-----HTLKPVIGVPMA 93 (169)
T ss_dssp SHHHHHHHHHHHHHTTEEEEEEEECSS-CCHHHHHHH-----TCSSCEEEEECC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECChh-hhhHHHHHh-----cCCCCEEEeecC
Confidence 678888999999999999666554432 222233332 346899999964
No 146
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=22.06 E-value=39 Score=30.60 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=33.3
Q ss_pred HHHHHHHHHH-HcCCCEEEEecCchhHHHHHHHHHHHhcC-CCCceEEEeeccc
Q 008310 172 QFKQAEETVK-KLDLDGLVVIGGDDSNTNACLLAENFRSK-DMKTRVIGCPKTI 223 (570)
Q Consensus 172 ~~~~~~~~l~-k~~Id~LviIGGddS~t~A~~Lae~~~~~-g~~i~VIgVPKTI 223 (570)
+..-+++.++ .-.+|.+|++-||+-++-+. +.++++ |.++-|+|.|++.
T Consensus 95 Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv---~~lr~~~G~~V~v~g~~~~~ 145 (165)
T 2qip_A 95 DVGITLDAIEIAPDVDRVILVSGDGDFSLLV---ERIQQRYNKKVTVYGVPRLT 145 (165)
T ss_dssp HHHHHHHHHHHGGGCSEEEEECCCGGGHHHH---HHHHHHHCCEEEEEECGGGS
T ss_pred cHHHHHHHHHhhccCCEEEEEECChhHHHHH---HHHHHHcCcEEEEEeCCCcC
Confidence 3444444332 25699999999999776643 555665 8888888887643
No 147
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=22.01 E-value=96 Score=31.44 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCC
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGD 226 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDND 226 (570)
.+++.+++.+-+ ..|.++||||-.|. |..+|.|-+++.|.+.-.|-=+.=||-+
T Consensus 197 ~~RQ~av~~la~-~~D~miVVGg~nSS-NT~rL~eia~~~~~~ty~Ie~~~el~~~ 250 (297)
T 3dnf_A 197 SLRQESVKKLAP-EVDVMIIIGGKNSG-NTRRLYYISKELNPNTYHIETAEELQPE 250 (297)
T ss_dssp HHHHHHHHHHGG-GSSEEEEESCTTCH-HHHHHHHHHHHHCSSEEEESSGGGCCGG
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCc-hhHHHHHHHHhcCCCEEEeCChHHCCHH
Confidence 345555555544 59999999998764 4578889888877665555555555543
No 148
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=21.56 E-value=66 Score=32.49 Aligned_cols=102 Identities=13% Similarity=0.188 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecc--cCCCCCCChHHHHHHHHHHHHcCCCE
Q 008310 110 AGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLC--SGRDKIETPEQFKQAEETVKKLDLDG 187 (570)
Q Consensus 110 ~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lG--s~R~k~~~~e~~~~~~~~l~k~~Id~ 187 (570)
+...+.++...+ .-+-+-+|..|-.... |.+....++.. |...+- |||. .+.+.++..+..+..++|+.
T Consensus 32 ~~~~~~L~~~~p--d~vsVT~~~~g~~r~~----t~~~a~~i~~~-g~~~i~Hltc~~--~~~~~l~~~L~~~~~~GI~n 102 (310)
T 3apt_A 32 FRTLEELKAFRP--AFVSITYGAMGSTRER----SVAWAQRIQSL-GLNPLAHLTVAG--QSRKEVAEVLHRFVESGVEN 102 (310)
T ss_dssp HHHHHHHGGGCC--SEEEECCCSTTCSHHH----HHHHHHHHHHT-TCCBCEEEECTT--SCHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHhcCCC--CEEEEecCCCCCcchh----HHHHHHHHHHh-CCCeEEEeecCC--CCHHHHHHHHHHHHHCCCCE
Confidence 344455554443 3356677776643322 33333344433 333322 5666 47889999999999999999
Q ss_pred EEEecCchh------------HHHHHHHHHHHhcC-C--CCceEEEee
Q 008310 188 LVVIGGDDS------------NTNACLLAENFRSK-D--MKTRVIGCP 220 (570)
Q Consensus 188 LviIGGddS------------~t~A~~Lae~~~~~-g--~~i~VIgVP 220 (570)
++++.||-. ...|..|-+++++. | ..+-|.+-|
T Consensus 103 iLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yP 150 (310)
T 3apt_A 103 LLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYP 150 (310)
T ss_dssp EEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECT
T ss_pred EEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 999999932 34678888877765 4 334444444
No 149
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=21.44 E-value=3.2e+02 Score=29.34 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=26.5
Q ss_pred cEEEEEecCCCCchhh-HHHHHHHHHH-HHhcCCCEEEEEe
Q 008310 91 LKIGVVLSGGQAPGGH-NVIAGIFDYL-QERTKGSKLYGFR 129 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~n-nvI~gl~~~l-~~~~~~~~v~Gf~ 129 (570)
..+.||+.||+ |+- ++++|....- +....+.+++|+.
T Consensus 174 ~G~~LVtGGG~--GlMEaa~aGA~~a~s~qr~~GG~vIGIi 212 (460)
T 3bq9_A 174 RGLNICTGCGP--GAMKGPMKGATIGHAKQRVEGGRYLGLT 212 (460)
T ss_dssp TTCEEEECCSS--GGGTHHHHHHHHHHHHTTCSSCCEEEEE
T ss_pred CCCEEEeCCcH--HHhhHHHhhHHhhcccccCCCCEEEEEe
Confidence 47889999995 766 8888887641 1123577889987
No 150
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=21.41 E-value=1.5e+02 Score=30.21 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=39.1
Q ss_pred HHhhhcCCeeEEEEecCC-CCcHHHHHhhhhcCCcEEEEC-----------CchhhhhcchHHHHH
Q 008310 254 TDARSSGKYYHFIRLMGR-AASHITLECALQTHPNIAIIG-----------EEIAAKKLTLKNVTD 307 (570)
Q Consensus 254 ~Da~S~~k~~~fIevMGR-~ag~lAle~aLat~pnivlIp-----------Ee~~~~~~tL~~iv~ 307 (570)
...+..++.+.||=+||- +.||++|--.....++.++++ |+...-..||++-.+
T Consensus 36 ~~~r~~g~~IgfVPTMG~LH~GHlsLi~~A~~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ 101 (314)
T 3inn_A 36 APARQQGKKIGFVPTMGYLHKGHLELVRRARVENDVTLVSIFVNPLQFGANEDLGRYPRDLERDAG 101 (314)
T ss_dssp HHHHHTTCCEEEEEECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGSCTTSSTTTCCCCHHHHHH
T ss_pred HHHHHcCCeEEEEcCCCccCHHHHHHHHHHHHhCCEEEEEECCChhhcCCCccccccCCCHHHHHH
Confidence 445556778999999996 789999977776677888774 655555566665544
No 151
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=21.36 E-value=59 Score=32.37 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=33.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 173 FKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 173 ~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
..+.++.+...++||+|+++-..+......|. +.+ ++||.+ |.+.....+ .+++.|-
T Consensus 117 ~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~----~~~--iPvV~i----~~~~~~~~~-~~V~~D~ 173 (366)
T 3h5t_A 117 HVSAQQLVNNAAVDGVVIYSVAKGDPHIDAIR----ARG--LPAVIA----DQPAREEGM-PFIAPNN 173 (366)
T ss_dssp HHHHHHHHHTCCCSCEEEESCCTTCHHHHHHH----HHT--CCEEEE----SSCCSCTTC-CEEEECH
T ss_pred HHHHHHHHHhCCCCEEEEecCCCChHHHHHHH----HCC--CCEEEE----CCccCCCCC-CEEEeCh
Confidence 35568888999999999998754433333333 334 557644 554433222 3566553
No 152
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=21.17 E-value=62 Score=30.02 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=31.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+++.+.+..+..++.+++.+|.+.|-. ..-.-.++- ....+|||||-..
T Consensus 43 ~p~~~~~~~~~a~~~g~~ViIa~AG~a-a~LpgvvA~-----~t~~PVIgVP~~~ 91 (163)
T 3ors_A 43 TPKMMVQFASEARERGINIIIAGAGGA-AHLPGMVAS-----LTTLPVIGVPIET 91 (163)
T ss_dssp SHHHHHHHHHHTTTTTCCEEEEEEESS-CCHHHHHHH-----HCSSCEEEEEECC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECCch-hhhHHHHHh-----ccCCCEEEeeCCC
Confidence 678888888888888888655554432 222223332 2467899999643
No 153
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=21.14 E-value=59 Score=30.98 Aligned_cols=103 Identities=9% Similarity=0.018 Sum_probs=58.6
Q ss_pred CccEEEEEecC-C---CCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCC
Q 008310 89 KSLKIGVVLSG-G---QAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGR 164 (570)
Q Consensus 89 ~~~~IGIv~sG-G---~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R 164 (570)
+..+|||++.. - ..|-...++.|+-++++.. +.++. +. +..+
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~----------------~~--------~~~~-------- 48 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV--NYFVL----------------PF--------PFSE-------- 48 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT--TCEEE----------------EC--------CCCS--------
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHc--CCEEE----------------EE--------eCCC--------
Confidence 34689999876 4 7788889999998887642 22221 00 0000
Q ss_pred CCCCChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCChhh
Q 008310 165 DKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240 (570)
Q Consensus 165 ~k~~~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~GFdT 240 (570)
. .+.....++.+...++||+|+.+.+.+... + +.+.+.+ ++||.+ |.+.....+ .++++|-
T Consensus 49 -~---~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~-~~l~~~~--iPvV~~----~~~~~~~~~-~~V~~D~ 109 (287)
T 3bbl_A 49 -D---RSQIDIYRDLIRSGNVDGFVLSSINYNDPR---V-QFLLKQK--FPFVAF----GRSNPDWDF-AWVDIDG 109 (287)
T ss_dssp -S---TTCCHHHHHHHHTTCCSEEEECSCCTTCHH---H-HHHHHTT--CCEEEE----SCCSTTCCC-CEEEECH
T ss_pred -c---hHHHHHHHHHHHcCCCCEEEEeecCCCcHH---H-HHHHhcC--CCEEEE----CCcCCCCCC-CEEEecc
Confidence 0 111234566778899999999987654222 2 3333344 567765 444332222 3566653
No 154
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=21.14 E-value=95 Score=28.84 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 222 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 222 (570)
+++.+.+.++.+++.+++.+|.+.|-.. .-.-.++- ....+|||||-.
T Consensus 45 tp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~-----~t~~PVIgVP~~ 92 (166)
T 3oow_A 45 TPDKMFDYAETAKERGLKVIIAGAGGAA-HLPGMVAA-----KTTLPVLGVPVK 92 (166)
T ss_dssp CHHHHHHHHHHTTTTTCCEEEEEECSSC-CHHHHHHH-----TCSSCEEEEECC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECCcch-hhHHHHHh-----ccCCCEEEeecC
Confidence 6788888888888888887776655432 22222332 346899999963
No 155
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=21.08 E-value=3.9e+02 Score=26.52 Aligned_cols=100 Identities=13% Similarity=0.026 Sum_probs=50.1
Q ss_pred CCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCC
Q 008310 88 NKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167 (570)
Q Consensus 88 ~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~ 167 (570)
..++||+|+.||.- + -+..++++.+.-.-..++.++.---.. . +..+...-|-...--...+
T Consensus 86 ~~~~ri~vl~Sg~g----~-nl~~ll~~~~~g~l~~~i~~Visn~~~-----------a-~~~~A~~~gIp~~~~~~~~- 147 (287)
T 3nrb_A 86 TDRKKVVIMVSKFD----H-CLGDLLYRHRLGELDMEVVGIISNHPR-----------E-ALSVSLVGDIPFHYLPVTP- 147 (287)
T ss_dssp TCCCEEEEEECSCC----H-HHHHHHHHHHHTSSCCEEEEEEESSCG-----------G-GCCCCCCTTSCEEECCCCG-
T ss_pred CCCcEEEEEEeCCC----c-CHHHHHHHHHCCCCCeEEEEEEeCChH-----------H-HHHHHHHcCCCEEEEeccC-
Confidence 34689999999983 3 334555554432223466655422111 0 2222212232221111111
Q ss_pred CChHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH
Q 008310 168 ETPEQF-KQAEETVKKLDLDGLVVIGGDDSNTNACLLAEN 206 (570)
Q Consensus 168 ~~~e~~-~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~ 206 (570)
.+.+.+ +++++.+++++.|.+|+. |.+-.-....|..+
T Consensus 148 ~~r~~~~~~~~~~l~~~~~Dlivla-gym~il~~~~l~~~ 186 (287)
T 3nrb_A 148 ATKAAQESQIKNIVTQSQADLIVLA-RYMQILSDDLSAFL 186 (287)
T ss_dssp GGHHHHHHHHHHHHHHHTCSEEEES-SCCSCCCHHHHHHH
T ss_pred cchhhHHHHHHHHHHHhCCCEEEhh-hhhhhcCHHHHhhc
Confidence 123333 467899999999966665 55554455555544
No 156
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=21.00 E-value=1e+02 Score=28.36 Aligned_cols=93 Identities=19% Similarity=0.209 Sum_probs=53.2
Q ss_pred CCCCC--hHHHHHHHHHHHHc----C-CCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccccCCCCCCCCCCCCC
Q 008310 165 DKIET--PEQFKQAEETVKKL----D-LDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFG 237 (570)
Q Consensus 165 ~k~~~--~e~~~~~~~~l~k~----~-Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTIDNDL~~~~ie~s~G 237 (570)
+++++ +++|....+++... . =|-++|=||-|=...|...-+ +.|+.++|||+-|- ...+..+.-+..+-
T Consensus 53 f~I~~~g~DDya~M~Evl~RR~~r~~~PDLilIDGGkgQl~aA~~vl~---elg~~i~v~glAK~-~e~l~~~~~~i~L~ 128 (159)
T 2nrr_A 53 YKIEQDHPDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALK---EIGKDCPVVGLAKK-EETVVFENREIHLP 128 (159)
T ss_dssp EEC-----CHHHHHHHHHHHHHTTSCCCSEEEESSCHHHHHHHHHHHH---HTTCCCCEEEEC-----CEEETTEEECCC
T ss_pred eecCCCCCCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHH---HcCCCccEEEEEcC-CcEEEeCCCeeecC
Confidence 45554 36788888887664 2 466777789888887776544 45788999999993 01111110011222
Q ss_pred hhh-HHHHHHHHHHHHHHHhhhcCC
Q 008310 238 FDT-ACKTFSEVIGNVMTDARSSGK 261 (570)
Q Consensus 238 FdT-A~k~~se~I~ni~~Da~S~~k 261 (570)
-+| +...+..+=+..++=|.+.++
T Consensus 129 ~~s~~l~llqriRDEaHRFAIt~HR 153 (159)
T 2nrr_A 129 HDHPVLRLLVQIRDETHRFAVSYHR 153 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 233 557777777777777766543
No 157
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=20.93 E-value=5.1e+02 Score=24.05 Aligned_cols=87 Identities=9% Similarity=0.051 Sum_probs=53.4
Q ss_pred cEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCCh
Q 008310 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETP 170 (570)
Q Consensus 91 ~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~ 170 (570)
.+|||++..-..|-...++.|+.++++.. +.++. +..+. .++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--g~~~~---------------------------------~~~~~---~~~ 44 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL--GYEAT---------------------------------IFDSQ---NDT 44 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT--TCEEE---------------------------------EEECT---TCH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEE---------------------------------EeCCC---CCH
Confidence 58999998877888888999998887642 22211 00000 123
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 171 EQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 171 e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
+...+.++.+...++|++|+.+.+.+... ..+ +.+.+.+ ++||.+
T Consensus 45 ~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-~~~-~~~~~~~--iPvV~~ 89 (290)
T 2fn9_A 45 AKESAHFDAIIAAGYDAIIFNPTDADGSI-ANV-KRAKEAG--IPVFCV 89 (290)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSCTTTTH-HHH-HHHHHTT--CCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCChHHHH-HHH-HHHHHCC--CeEEEE
Confidence 44456677777899999999987654211 122 2333344 567755
No 158
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=20.85 E-value=3.9e+02 Score=27.38 Aligned_cols=105 Identities=18% Similarity=0.173 Sum_probs=60.7
Q ss_pred HHcCCCEEEEecCch---hHHHHHHHHHHHhcCCCCceEEEeecccc---CCCCCCCCCCCCChhhHHHHHHHHHHHHHH
Q 008310 181 KKLDLDGLVVIGGDD---SNTNACLLAENFRSKDMKTRVIGCPKTID---GDLKCKDVPISFGFDTACKTFSEVIGNVMT 254 (570)
Q Consensus 181 ~k~~Id~LviIGGdd---S~t~A~~Lae~~~~~g~~i~VIgVPKTID---NDL~~~~ie~s~GFdTA~k~~se~I~ni~~ 254 (570)
++.+...+++.|=|. -.+.+..|.+.+++.|++...++-.-|.- .|..-. . -++-+|-++- .+..+..
T Consensus 165 ~~i~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~-~-D~~~~~~~ag----~~e~~i~ 238 (350)
T 2g0t_A 165 YRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYV-I-DAVPADFVSG----VVEKAVL 238 (350)
T ss_dssp GGCCSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECC-G-GGSBGGGHHH----HHHHHHH
T ss_pred eeecceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCC-C-CceecchhhH----HHHhhHH
Confidence 334566788888664 37788889999999999877777555432 222110 0 1333443333 3333334
Q ss_pred HhhhcCCeeEEEEecCCC--CcHHH--HHhhhhcCCcEEEE
Q 008310 255 DARSSGKYYHFIRLMGRA--ASHIT--LECALQTHPNIAII 291 (570)
Q Consensus 255 Da~S~~k~~~fIevMGR~--ag~lA--le~aLat~pnivlI 291 (570)
++......|.+||-.|-- .++.. ++.....+|+.+++
T Consensus 239 ~~~~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl 279 (350)
T 2g0t_A 239 KLEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFL 279 (350)
T ss_dssp HHHHTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEE
T ss_pred HhhhcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEE
Confidence 443334457899988743 34333 33333467888888
No 159
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=20.74 E-value=2.5e+02 Score=26.81 Aligned_cols=96 Identities=16% Similarity=0.233 Sum_probs=49.2
Q ss_pred CccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeC---CcccccCCCEEECChhhhccccccCCceecccCCC
Q 008310 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRG---GPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRD 165 (570)
Q Consensus 89 ~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~---G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~ 165 (570)
+++||+|+.||.- +| ...++++++.. .+.+|.++.- ...| ++ +...=|-...--.+.
T Consensus 4 ~~~riavl~SG~G----sn-l~all~~~~~~-~~~eI~~Vis~~~~a~~-------------~~-~A~~~gIp~~~~~~~ 63 (215)
T 3tqr_A 4 EPLPIVVLISGNG----TN-LQAIIGAIQKG-LAIEIRAVISNRADAYG-------------LK-RAQQADIPTHIIPHE 63 (215)
T ss_dssp CCEEEEEEESSCC----HH-HHHHHHHHHTT-CSEEEEEEEESCTTCHH-------------HH-HHHHTTCCEEECCGG
T ss_pred CCcEEEEEEeCCc----HH-HHHHHHHHHcC-CCCEEEEEEeCCcchHH-------------HH-HHHHcCCCEEEeCcc
Confidence 4579999999962 22 34455554432 3456666542 1111 11 111112222221222
Q ss_pred CCCChHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 008310 166 KIETPEQF-KQAEETVKKLDLDGLVVIGGDDSNTNACLLAE 205 (570)
Q Consensus 166 k~~~~e~~-~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae 205 (570)
.+.+.+.+ +.+.+.+++++.|.+|+.| .+-.-....|..
T Consensus 64 ~~~~r~~~d~~~~~~l~~~~~Dliv~ag-y~~il~~~~l~~ 103 (215)
T 3tqr_A 64 EFPSRTDFESTLQKTIDHYDPKLIVLAG-FMRKLGKAFVSH 103 (215)
T ss_dssp GSSSHHHHHHHHHHHHHTTCCSEEEESS-CCSCCCHHHHHH
T ss_pred ccCchhHhHHHHHHHHHhcCCCEEEEcc-chhhCCHHHHhh
Confidence 23344444 4678899999999877766 444444444543
No 160
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=20.65 E-value=62 Score=30.31 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeecc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKT 222 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKT 222 (570)
+++.+.+..+..++.+++.+|.+.|- +..-.-.++- ....+|||||-.
T Consensus 52 ~p~~~~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA~-----~t~~PVIgVP~~ 99 (174)
T 3kuu_A 52 TPDRLFSFAEQAEANGLHVIIAGNGG-AAHLPGMLAA-----KTLVPVLGVPVQ 99 (174)
T ss_dssp CHHHHHHHHHHTTTTTCSEEEEEEES-SCCHHHHHHH-----TCSSCEEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEECCh-hhhhHHHHHh-----ccCCCEEEeeCC
Confidence 67888888888888899965555443 2222233332 346899999964
No 161
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=20.47 E-value=4.1e+02 Score=24.64 Aligned_cols=48 Identities=10% Similarity=0.051 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
.++.+++.+++++++++=+.+.+-+...+..+.+.+++.|+++..++.
T Consensus 19 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 66 (275)
T 3qc0_A 19 GFAEAVDICLKHGITAIAPWRDQVAAIGLGEAGRIVRANGLKLTGLCR 66 (275)
T ss_dssp CHHHHHHHHHHTTCCEEECBHHHHHHHCHHHHHHHHHHHTCEESCEEE
T ss_pred CHHHHHHHHHHcCCCEEEeccccccccCHHHHHHHHHHcCCceEEeec
Confidence 467888999999999998877543445677788888888987766664
No 162
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=20.44 E-value=65 Score=30.40 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEeeccc
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTI 223 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVPKTI 223 (570)
+++.+.+..+..++.+++.+|.+.|- +..-+-.++- ....+|||||-..
T Consensus 53 ~p~~l~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA~-----~t~~PVIgVP~~~ 101 (183)
T 1o4v_A 53 TPDRMFEYAKNAEERGIEVIIAGAGG-AAHLPGMVAS-----ITHLPVIGVPVKT 101 (183)
T ss_dssp CHHHHHHHHHHTTTTTCCEEEEEEES-SCCHHHHHHH-----HCSSCEEEEEECC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEecCc-ccccHHHHHh-----ccCCCEEEeeCCC
Confidence 67888888888888889865554333 2222223332 2467999999754
No 163
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=20.25 E-value=4.3e+02 Score=25.48 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=52.3
Q ss_pred EEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCcccccCCCEEECChhhhccccccCCceecccCCCCCCChH
Q 008310 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPE 171 (570)
Q Consensus 92 ~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e 171 (570)
.|||.=|| -|+-+|.+.+.+. .|+..++-|-+--. -.|-+-+++.+ .+
T Consensus 5 ~IgvfDSG---vGGltv~~~i~~~----lP~~~~iy~~D~~~----~Pyg~~s~~~i---------------------~~ 52 (267)
T 2gzm_A 5 AIGVIDSG---VGGLTVAKELIRQ----LPKERIIYLGDTAR----CPYGPRSREEV---------------------RQ 52 (267)
T ss_dssp CEEEEESS---STTHHHHHHHHHH----CTTSCEEEEECTTT----CCCTTSCHHHH---------------------HH
T ss_pred cEEEEeCC---ccHHHHHHHHHHH----CCCCCEEEecCCCC----CCCCCCCHHHH---------------------HH
Confidence 69999998 7788888777643 56555443322100 00111111111 12
Q ss_pred HHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEe
Q 008310 172 QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGC 219 (570)
Q Consensus 172 ~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgV 219 (570)
-..++++.+.+.+.|++||-....|......|.+. ++++||||
T Consensus 53 ~~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~-----~~iPvigi 95 (267)
T 2gzm_A 53 FTWEMTEHLLDLNIKMLVIACNTATAVVLEEMQKQ-----LPIPVVGV 95 (267)
T ss_dssp HHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHH-----CSSCEEES
T ss_pred HHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHh-----CCCCEEee
Confidence 25566788888999998887655543334444443 36789986
No 164
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.13 E-value=2.4e+02 Score=25.07 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHHhcCCCCceEEEee
Q 008310 169 TPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCP 220 (570)
Q Consensus 169 ~~e~~~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae~~~~~g~~i~VIgVP 220 (570)
++++++++++.+.+- +-++++|--.|...|..++..+...|.+ +..++
T Consensus 25 ~~~~l~~~~~~i~~a--~~I~i~G~G~S~~~a~~~~~~l~~~g~~--~~~~~ 72 (187)
T 3sho_A 25 QPEAIEAAVEAICRA--DHVIVVGMGFSAAVAVFLGHGLNSLGIR--TTVLT 72 (187)
T ss_dssp CHHHHHHHHHHHHHC--SEEEEECCGGGHHHHHHHHHHHHHTTCC--EEEEC
T ss_pred CHHHHHHHHHHHHhC--CEEEEEecCchHHHHHHHHHHHHhcCCC--EEEec
Confidence 678899999999876 5999999988999999898888765543 44443
No 165
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=20.04 E-value=4.2e+02 Score=26.40 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=60.0
Q ss_pred CChhHHHhhCCcccCCC--eeEEecCCccccccCCCCccEEEEEecCCCCchhhHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 008310 55 GDPEEIKKLFPKFYGQP--SARLVECDPMACTLMENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGP 132 (570)
Q Consensus 55 ~~~~~i~~~fp~~~~~~--~~~~~~~~~~~~~~~~~~~~~IGIv~sGG~aPG~nnvI~gl~~~l~~~~~~~~v~Gf~~G~ 132 (570)
.+.+++++-|..+...- -+++.. ...++||+|+.||.- + ....++++.+.-.-..++.++.---
T Consensus 67 ~~~~~L~~~f~~la~~~~m~~~l~~---------~~~~~ri~vl~Sg~g----~-~l~~ll~~~~~g~l~~~i~~Visn~ 132 (292)
T 3lou_A 67 LRVDALRREFEPIAERFRMQWAIHD---------VAARPKVLIMVSKLE----H-CLADLLFRWKMGELKMDIVGIVSNH 132 (292)
T ss_dssp CCHHHHHHHHHHHHHHHTCEEEEEE---------TTSCCEEEEEECSCC----H-HHHHHHHHHHHTSSCCEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHhcCcEEEeec---------cCCCCEEEEEEcCCC----c-CHHHHHHHHHcCCCCcEEEEEEeCc
Confidence 34667777665443311 123322 234679999999983 3 3455555544322234666554211
Q ss_pred ccccCCCEEECChhhhccccccCCceecccCCCCCCChHHH-HHHHHHHHHcCCCEEEEecCchhHHHHHHHHH
Q 008310 133 AGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQF-KQAEETVKKLDLDGLVVIGGDDSNTNACLLAE 205 (570)
Q Consensus 133 ~GLl~~~~~eLt~~~v~~~~n~GG~~~lGs~R~k~~~~e~~-~~~~~~l~k~~Id~LviIGGddS~t~A~~Lae 205 (570)
.. ...+...-|-...--...+ .+.+.+ +++++.+++++.|.+|+. |.+-.-....|..
T Consensus 133 ~~-------------~~~~A~~~gIp~~~~~~~~-~~r~~~~~~~~~~l~~~~~Dlivla-~y~~il~~~~l~~ 191 (292)
T 3lou_A 133 PD-------------FAPLAAQHGLPFRHFPITA-DTKAQQEAQWLDVFETSGAELVILA-RYMQVLSPEASAR 191 (292)
T ss_dssp ST-------------THHHHHHTTCCEEECCCCS-SCHHHHHHHHHHHHHHHTCSEEEES-SCCSCCCHHHHHH
T ss_pred HH-------------HHHHHHHcCCCEEEeCCCc-CCHHHHHHHHHHHHHHhCCCEEEec-CchhhCCHHHHhh
Confidence 11 1111112232222111111 233333 467899999999976665 4554444445543
No 166
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=20.00 E-value=78 Score=28.96 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=19.3
Q ss_pred CChHHHHHHHHHHHHc-CCCEEEEecCchh
Q 008310 168 ETPEQFKQAEETVKKL-DLDGLVVIGGDDS 196 (570)
Q Consensus 168 ~~~e~~~~~~~~l~k~-~Id~LviIGGddS 196 (570)
.+.+.+.++++.+.+. +.|.+|+.||-+-
T Consensus 52 Dd~~~i~~~l~~a~~~~~~DlVittGG~g~ 81 (172)
T 1mkz_A 52 ENRYAIRAQVSAWIASDDVQVVLITGGTGL 81 (172)
T ss_dssp SCHHHHHHHHHHHHHSSSCCEEEEESCCSS
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 3456666666655554 6899999998753
Done!