RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 008310
(570 letters)
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
Length = 568
Score = 1084 bits (2806), Expect = 0.0
Identities = 430/547 (78%), Positives = 478/547 (87%), Gaps = 2/547 (0%)
Query: 13 AAGRVASIYTELQISRMNVSLPLPSVLKNTFNVVDDAASSAAGDPEEIKKLFPKFYGQPS 72
A+GR AS+Y+E+Q SR++ +LPLPSVLK F +VD SSAAG+PEEI KLFP +GQPS
Sbjct: 21 ASGRDASVYSEVQSSRIDHALPLPSVLKGPFKIVDGPPSSAAGNPEEIAKLFPNLFGQPS 80
Query: 73 ARLVECDPMACTLMENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGP 132
LV A L ++ LKIGVVLSGGQAPGGHNVI+GIFDYLQE KGS LYGF+GGP
Sbjct: 81 VMLVPSQ--ADALSSDQKLKIGVVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGP 138
Query: 133 AGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIG 192
AGIMKCK+VEL++EFIYPYRNQGGFDM+CSGRDKIETPEQFKQAEET KLDLDGLVVIG
Sbjct: 139 AGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETATKLDLDGLVVIG 198
Query: 193 GDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNV 252
GDDSNTNACLLAE FR+K++KTRVIGCPKTIDGDLK K+VP SFGFDTACK +SE+IGNV
Sbjct: 199 GDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNV 258
Query: 253 MTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDI 312
M DARS+GKYYHF+RLMGRAASHITLECALQTHPNI IIGEE+AAKKLTLKNVTDYI D+
Sbjct: 259 MIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKLTLKNVTDYIVDV 318
Query: 313 ICKRSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQEL 372
ICKR+E GYN+GV+LI EGLIDFIPEVQ LIAELNEILAH VD +G WKKKLK QS +L
Sbjct: 319 ICKRAELGYNYGVILIPEGLIDFIPEVQHLIAELNEILAHDVVDEEGHWKKKLKPQSLQL 378
Query: 373 FELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHF 432
F+ P IQ+QL+LERDPHGNVQVAKIETE+MLIQMVE EL KRKQ+G+YKG F GQ HF
Sbjct: 379 FDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELEKRKQEGSYKGHFKGQSHF 438
Query: 433 FGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTALTSL 492
FGYEGRCG PTNFDA YCYALG+ +GALLH+GKTGLI+SVGNL PVEEWTVGGTALTSL
Sbjct: 439 FGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVGGTALTSL 498
Query: 493 MHVERRHGKFKPVIKKAMVELEGKPFKTFASLREDWTIKNLYASPGPIQFSGPTANDINH 552
M VERRHGKFKPVIKKAMVELEG PFK FASLR++W +KN Y SPGPIQFSGP ++ NH
Sbjct: 499 MDVERRHGKFKPVIKKAMVELEGAPFKKFASLRDEWALKNRYISPGPIQFSGPGSDATNH 558
Query: 553 TLMLELG 559
TL LELG
Sbjct: 559 TLKLELG 565
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include pyrophosphate-dependent
phosphofructokinases. These are found in bacteria as
well as plants. These may be dimeric nonallosteric
enzymes as in bacteria or allosteric heterotetramers as
in plants.
Length = 550
Score = 852 bits (2202), Expect = 0.0
Identities = 371/553 (67%), Positives = 450/553 (81%), Gaps = 17/553 (3%)
Query: 19 SIYTELQISRMNVSLPLPSVLKNTFN---VVDDAASSAAGDPEEIKKLFPKFYGQPSARL 75
+Y+ +Q R+N + LPSVLK FN +V+ A+SAAGDP+ + KLFP YGQPS
Sbjct: 1 MVYSLVQQERINYTPKLPSVLKGDFNNIKIVEGPATSAAGDPDALAKLFPGTYGQPSVAF 60
Query: 76 VECDPMACTLMENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGI 135
V LKIG+VLSGGQAPGGHNVI+G+FDYL+ER KGS LYGF+GGPAGI
Sbjct: 61 VPDQD---APSSAPKLKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGI 117
Query: 136 MKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDD 195
+KC ++EL++E+I PYRN GGFDM+CSGR KIET +QFKQAEET KKLDLD LVVIGGDD
Sbjct: 118 LKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDD 177
Query: 196 SNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTD 255
SNTNA LLAENFRSK +KTRVIG PKTIDGDLK K++ SFGFDTA K +SE+IGNVM D
Sbjct: 178 SNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRD 237
Query: 256 ARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICK 315
ARS+GKY+HF++LMGR+ASHI LECAL+THPNI II EE++A+K TLKN+TDY+ D+ICK
Sbjct: 238 ARSTGKYWHFVKLMGRSASHIALECALKTHPNICIISEEVSAQKQTLKNITDYMVDVICK 297
Query: 316 RSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFE- 374
R+E GYNFGVVL+ EGLI+FIPEV++LIAELNEILA+ V+ +G+WKKKL QS +LF+
Sbjct: 298 RAELGYNFGVVLVPEGLIEFIPEVKELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDL 357
Query: 375 --------LFPEEIQKQLLLERDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQF 426
LF E IQ+QL+LERDPHGNVQV++IETE++LIQMVE L K KQ G YKGQF
Sbjct: 358 LPKGVYLPLFIEAIQEQLMLERDPHGNVQVSRIETEKLLIQMVETRLEKMKQAGAYKGQF 417
Query: 427 TGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGG 486
GQ HFFGYEGRC FP+NFDA+YCYALG+ +G LL++GKTG I+SVGNL PVEEWTVGG
Sbjct: 418 MGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLNSGKTGYISSVGNLAAPVEEWTVGG 477
Query: 487 TALTSLMHVERRHGKFKPVIKKAMVELEGKPFKTFASLREDWTIKNLYASPGPIQFSGPT 546
LT LM++ERRHGKFKPVIKKA+V+LEG PFK FASLRE+W +KN Y PGP+Q++GP+
Sbjct: 478 VPLTMLMNMERRHGKFKPVIKKALVDLEGAPFKKFASLREEWALKNRYIYPGPVQYTGPS 537
Query: 547 A--NDINHTLMLE 557
++++HTL+LE
Sbjct: 538 EGSDELSHTLLLE 550
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate
1-phosphotransferase. Diphosphate--fructose-6-phosphate
1-phosphotransferase catalyzes the addition of phosphate
from diphosphate (PPi) to fructose 6-phosphate to give
fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is
also known as pyrophosphate-dependent
phosphofructokinase. The usage of PPi-dependent enzymes
in glycolysis presumably frees up ATP for other
processes. TIGR02482 represents the ATP-dependent
6-phosphofructokinase enzyme contained within Pfam
pfam00365: Phosphofructokinase. This model hits
primarily bacterial, plant alpha, and plant beta
sequences [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 539
Score = 845 bits (2186), Expect = 0.0
Identities = 314/542 (57%), Positives = 395/542 (72%), Gaps = 10/542 (1%)
Query: 24 LQISRMNVSLPLPSVLKNTFN---VVDDAASSAAGDPEEIKKLFPKFYGQPSARLVECDP 80
LQ SR+ LP VL+ + D ++A D EE+K+LFP YG P P
Sbjct: 1 LQQSRLQYVPKLPKVLQGDTANISLEDGEPTAAVADQEELKELFPNTYGLPIITFE---P 57
Query: 81 MACTLMENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKF 140
+ E++ LKIGV+LSGGQAPGGHNVI+G+FD L++ SKLYGF GGP G++ +
Sbjct: 58 GEASPDEHQPLKIGVILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNY 117
Query: 141 VELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNA 200
VEL+ E I YRN GGFD++ SGR KIET EQF +A T KKL LDGLV+IGGDDSNTNA
Sbjct: 118 VELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNA 177
Query: 201 CLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSG 260
LLAE F +KT+VIG PKTIDGDLK + + SFGFDTACK +SE+IGN+ DA S+
Sbjct: 178 ALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSAK 237
Query: 261 KYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAG 320
KY+HFIRLMGR+ASHI LECALQTHPN+ IIGEE+AAKK+TL +TDYI D+I KR+ G
Sbjct: 238 KYWHFIRLMGRSASHIALECALQTHPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKG 297
Query: 321 YNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVD--RDGVWKKKLKSQSQELFELFPE 378
NFGV+LI EGLI+FIPEVQ LI ELN +LA ++ R + KL S+ LFE PE
Sbjct: 298 KNFGVILIPEGLIEFIPEVQALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPE 357
Query: 379 EIQKQLLLERDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGR 438
I+ QLLL+RDPHGNVQV++IETE++LI++V+ ELNKRK++G YKG+F+ HFFGYEGR
Sbjct: 358 FIRHQLLLDRDPHGNVQVSQIETEKLLIELVQTELNKRKKEGEYKGKFSAVSHFFGYEGR 417
Query: 439 CGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTALTSLMHVERR 498
C FP+NFD++YCYALG+ + LL G TG ++++ NL P EEW GG LT +M++ERR
Sbjct: 418 CAFPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIAGGVPLTMMMNMERR 477
Query: 499 HGKFKPVIKKAMVELEGKPFKTFASLREDWTIKNLYASPGPIQFSGPT--ANDINHTLML 556
HG+ KPVIKKA+V+LEGKPFK FAS R+ W +++LY PGPIQ+ GP + TL+L
Sbjct: 478 HGEMKPVIKKALVDLEGKPFKKFASNRDKWALEDLYVFPGPIQYFGPEEVCDQPTLTLLL 537
Query: 557 EL 558
E
Sbjct: 538 EQ 539
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 797 bits (2062), Expect = 0.0
Identities = 292/552 (52%), Positives = 385/552 (69%), Gaps = 18/552 (3%)
Query: 21 YTELQISRMNVSLPLPSVLKNTFN---VVDDAASSAAGDPEEIKKLFPKFYGQPSARLVE 77
+ LQ++R+ LP +L+N +VD + + D +E+ +LFP YG P V+
Sbjct: 3 KSYLQLARLKYRPKLPKLLQNDPGLIKIVDGEFTESVADQDELAELFPNTYGLPYVTFVK 62
Query: 78 CDPMACTLMENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMK 137
+K LK+GV+LSGGQAPGGHNVIAG+FD L++ SKL+GF GGP G++
Sbjct: 63 GSES-----SSKPLKVGVILSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLN 117
Query: 138 CKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSN 197
K++E++ E I YRN GGFDM+ SGR KIET EQ + ETVKKL LDGLV+IGGDDSN
Sbjct: 118 GKYIEITEEVIDEYRNTGGFDMIGSGRTKIETEEQKEACLETVKKLKLDGLVIIGGDDSN 177
Query: 198 TNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDAR 257
TNA +LAE F KT+VIG PKTIDGDLK + + SFGFDTA KT+SE+IGN+ DA
Sbjct: 178 TNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDAL 237
Query: 258 SSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRS 317
S+ KY+HFI+LMGR+ASHI LECALQTHPNI +I EE+A KK++L+++ YI +I R+
Sbjct: 238 SAKKYWHFIKLMGRSASHIALECALQTHPNICLISEEVAEKKMSLQDIVHYIASVIADRA 297
Query: 318 EAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWK--------KKLKSQS 369
G N+GV+LI EGLI+FIPE++ LI ELN +LA + G+ KL +S
Sbjct: 298 AKGKNYGVILIPEGLIEFIPEMKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPES 357
Query: 370 QELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQ 429
+LF+ PE+I +QLLL+RDPHGNVQV+KIETE++LI+MV+ EL K K +G YKG F+
Sbjct: 358 AKLFKSLPEDIARQLLLDRDPHGNVQVSKIETEKLLIEMVKKELEKLKPEGKYKGPFSAI 417
Query: 430 PHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTAL 489
HFFGYEGR FP+NFDA+YCYALG+ + L+ GKTG ++++ NL P EW G L
Sbjct: 418 SHFFGYEGRSAFPSNFDADYCYALGYTAALLILNGKTGYMSTIKNLTSPYTEWIAGAVPL 477
Query: 490 TSLMHVERRHGKFKPVIKKAMVELEGKPFKTFASLREDWTIKNLYASPGPIQFSGPTA-- 547
T +M++ERRHGK KPVIKKA+V+L+G PFK FA R+ W +++ Y PGP+Q+ GP
Sbjct: 478 TMMMNMERRHGKEKPVIKKALVDLDGPPFKYFAKYRDIWALEDSYRFPGPLQYFGPEELC 537
Query: 548 NDINHTLMLELG 559
+ TL+LEL
Sbjct: 538 DQRTLTLLLELN 549
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 610
Score = 500 bits (1290), Expect = e-172
Identities = 241/567 (42%), Positives = 340/567 (59%), Gaps = 21/567 (3%)
Query: 22 TELQISRMNVSLPLPSVLKNTFNVVDDAASSAAGDPEE---IKKLFPKFYGQPSARLVEC 78
+ LQ R LP L+ T V+ ++ A DP + I + FP YGQP A +
Sbjct: 5 SGLQKLRSLYQPELPPCLQGTTVRVELGDATTAADPADAHAISRAFPHTYGQPLAHFLRA 64
Query: 79 D---PMACTLMENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGI 135
P A + E+ ++++GVV G Q+PGGHNVI G+ D L+ S L GF GG G+
Sbjct: 65 TAKVPDAQVITEHPAVRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGL 124
Query: 136 MKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDD 195
K +E++ + + Y+NQGG+D+L +D+I T EQ A + L LDGLV+IGG
Sbjct: 125 FAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVT 184
Query: 196 SNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTD 255
SNT+A LAE F KT+V+G P T++GDLK + V + GFDT CK S++I NV TD
Sbjct: 185 SNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLISNVCTD 244
Query: 256 ARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICK 315
A S+ KYY+FIRLMGR ASH+ LECALQ+HPN+ I+GEE+AA KLTL ++T I D +
Sbjct: 245 ALSAEKYYYFIRLMGRKASHVALECALQSHPNMVILGEEVAASKLTLFDITKQICDAVQA 304
Query: 316 RSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFEL 375
R+E N GV+LI EGLI+ IPEV L+ E++ +L GV D + +L + LFE
Sbjct: 305 RAEQDKNHGVILIPEGLIESIPEVYALLQEIHGLLKQ-GVSVDNI-SSQLSPWASALFEF 362
Query: 376 FPEEIQKQLLLERDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKG-QFTGQPHFFG 434
P I+KQLLL + + Q+++IETE++L Q+VE E+NKR ++GTYKG +F HFFG
Sbjct: 363 LPPFIKKQLLLHPESDDSAQLSQIETEKLLAQLVETEMNKRTKEGTYKGKKFNAICHFFG 422
Query: 435 YEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTALTSLMH 494
Y+ R P+ FD +Y Y LG +L AG G +A+V NL PV +W G +T++M
Sbjct: 423 YQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKSPVNKWRCGAAPITAMMS 482
Query: 495 VERRHGKF-------KPVIKKAMVELEGKPFKTFASLREDWTIKNLYASPGPIQFSGPTA 547
V +R + KP I A V+L+GK ++ + + +LY +PGP+QF GP A
Sbjct: 483 V-KRWSRGPGASQIGKPAIHPAPVDLKGKAYELLRQNASSFLMDDLYRNPGPLQFDGPGA 541
Query: 548 NDINHTLMLE----LGQGQPAQAKLNK 570
+ TL +E +G+ + Q L+K
Sbjct: 542 DAKPITLCVEDQDYMGRIKKLQEYLDK 568
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
Provisional.
Length = 1328
Score = 518 bits (1335), Expect = e-170
Identities = 239/525 (45%), Positives = 335/525 (63%), Gaps = 13/525 (2%)
Query: 35 LPSVLKNTFNVVDDAASSAAGDPE--EIKKLFPKFYGQPSARLVECDPMACTLMENKSLK 92
LP +L++ ++ + +A G E ++ FP G + + + + + +
Sbjct: 45 LPHILRSPLSIKEVSAFEGMGKMERSDVSSYFPLTSGNSLVKFEAISDGSSSWKKFPARR 104
Query: 93 IGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYR 152
IGVVLSGGQA GGHNVIAG+ Y++ + S+L+GF GGP G+ ++ EL+ + I
Sbjct: 105 IGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGIL 164
Query: 153 NQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDM 212
NQGGF+++CSGR KIET EQ + + E +KL L GLVVIGGDDSNTNA +LAE F+
Sbjct: 165 NQGGFNIICSGRHKIETEEQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSS 224
Query: 213 KTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRA 272
T V+GCPKTIDGDLK + + SFG+DTA KT+SE IG++M ++ G Y+F+RLMGR+
Sbjct: 225 STVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIMDAIKTEGYGYYFVRLMGRS 284
Query: 273 ASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISEGL 332
ASHITLEC LQT N+ +IGEEI + +L ++ D I ++I KR G G+VL+ EGL
Sbjct: 285 ASHITLECGLQTRANMILIGEEIKEENRSLMSIVDEIVEMILKRDSLGKKHGIVLLPEGL 344
Query: 333 IDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQE---LFELFPEEIQKQLLLERD 389
I+FIPE + LI ELN IL + K+ + S SQE LF P ++Q QLLLERD
Sbjct: 345 IEFIPEFETLIKELNLILL-----KTNDRKQIIDSLSQEMKTLFLELPSDVQNQLLLERD 399
Query: 390 PHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANY 449
PHGNVQVAKI TE +L+ M + +L + K+ T H+FGYEGRC P+NFDA+Y
Sbjct: 400 PHGNVQVAKIATEELLVHMAKEKLEEVKKDYILDNVKT---HYFGYEGRCALPSNFDASY 456
Query: 450 CYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTALTSLMHVERRHGKFKPVIKKA 509
C+ALG + AL+ ++G +A V L E+W G LT +M++E R GK PVIKK
Sbjct: 457 CFALGHTAAALIDNQRSGYMAVVRKLSLTPEQWEPAGCPLTYMMNIELRKGKSVPVIKKY 516
Query: 510 MVELEGKPFKTFASLREDWTIKNLYASPGPIQFSGPTANDINHTL 554
+V+L+G+ + + +R +W + + Y +PGPIQF GP + N+ +
Sbjct: 517 LVDLKGQSYLAYCQVRSEWKLNDYYRNPGPIQFDGPNSGITNYMI 561
Score = 188 bits (478), Expect = 1e-50
Identities = 121/556 (21%), Positives = 212/556 (38%), Gaps = 100/556 (17%)
Query: 94 GVVLSGGQAPGGHNVIAGIFDYLQERTK---GSKLYGFRGGPAGIMKCKFVELSSEFIYP 150
G++LS PG NVI G+ + L + L F G A +K S +
Sbjct: 679 GLILSCLSTPGTQNVICGLVNGLPSLKQLIVFKSLSDFYEGKA--LKVDLTSEGSLEFFE 736
Query: 151 YR-NQGGFDMLCSGRDKIETPEQFKQAEETVKKL-------------------------- 183
N GG K+ E K+ T K
Sbjct: 737 NSLNSGGCIFPNGVEIKMNVSE--KKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQ 794
Query: 184 -----DLDGLVVIGGDDSNTNACLLAE-----NFRSKDMKTRVIGCPKTIDGDLKCKDVP 233
++ + ++G ++ T L+E + + V+ P ++ + + +
Sbjct: 795 LLSFFNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIE 854
Query: 234 ISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGE 293
GFD+ K+ S ++GN++TD+ S+ KY++F++++G S++ LE +QTHPN+ +I E
Sbjct: 855 TCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQTHPNLVVIPE 914
Query: 294 EIAAKKL----------TLKNVTDYITDIICKRSEAGYNFGVVLISEGLIDFIPEVQQLI 343
A KL TL ++ I DIIC RS G NFG +L+SEGL D + ++
Sbjct: 915 RYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQVYPTREYR 974
Query: 344 AELNEILAHGGVDRDGVWKKKLKSQSQ---------ELFELFPEEIQKQLL--LERDPHG 392
+ + ++ E F+L +I ++L+ L
Sbjct: 975 KIFSRFSTQNLCNASNSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLINSR-- 1032
Query: 393 NVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYA 452
++ + TE +L +V+ EL R+ K K F + R P++FD+
Sbjct: 1033 --KICDVRTEIILSALVQKELKFRRSKNKIKNGMNPVCFSFTDQVRACIPSDFDSTLGLM 1090
Query: 453 LGFASGALLHAGKT-GLIASVGNLGEPVEEWTVGGTALTSLMHVERRHGKFKPVIKKAMV 511
G + ++++ G + + + ++ W + ++SLM + K + +
Sbjct: 1091 YGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISSLMTLNIEGDKIMDSRNNSNL 1150
Query: 512 ELEGK------------------------------PFKTFASLREDWTIKNLYASPGPIQ 541
E K FK + E W + N YA+PGPIQ
Sbjct: 1151 SFESKKLLTESTLGNAGHQLEFICKLNSVNMRNNPSFKLLMNHIEKWEVDNTYANPGPIQ 1210
Query: 542 FSGPTANDINHTLMLE 557
+ N N TL
Sbjct: 1211 YFNLFKNLFNRTLFES 1226
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
Length = 1419
Score = 452 bits (1163), Expect = e-144
Identities = 231/561 (41%), Positives = 336/561 (59%), Gaps = 17/561 (3%)
Query: 1 MSNKSSIVKRDEAAGRVASI---YTELQISRMNVSLPLPSVLKNTFNVVDDAASSA---A 54
+ N++ +K+ + G AS+ + LQ R+ LP L + + ++++
Sbjct: 83 VDNENMKIKKLKEHGHSASLNDDLSPLQYERIKYQPTLPKALASEYQILEENHGDDFINK 142
Query: 55 GDPEEIKKLFPKFYGQPSARLVECDPMACTLMENKSLKIGVVLSGGQAPGGHNVIAGIFD 114
D EE+K+ + P + E + + LKIG++LSGG APGGHNVI+GI+D
Sbjct: 143 KDYEEVKRFLKNLHNLPILNVKETNNHE-SFKGGNVLKIGIILSGGPAPGGHNVISGIYD 201
Query: 115 YLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFK 174
Y + + S++ GF GG G+ +V ++ + +RN GGF+ML SGR K+ +
Sbjct: 202 YAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVRNKDDLI 261
Query: 175 QAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPI 234
E V KL L+GLV+IGGD SN+NA L++E F + + +IG PKTIDGDLK + + I
Sbjct: 262 AIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEI 321
Query: 235 SFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEE 294
SFGFDTA KT+SEVIGN+ TD ++ YH +R+MGR+ASH+ LECALQT PNI +IGEE
Sbjct: 322 SFGFDTATKTYSEVIGNLCTDVKTGHNVYHVVRVMGRSASHVVLECALQTRPNIVLIGEE 381
Query: 295 IAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGG 354
+ + L+LK++ I + I KR N+GV+LI EGLI+F+PE++ LI ELN IL G
Sbjct: 382 VEKENLSLKDIVSNIVNTILKRRSLNKNYGVILIPEGLIEFVPEMKILIGELNVILKEGP 441
Query: 355 VDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQMVEAELN 414
D KLK S+E+++ P I+ QLL++R+ G +QV KI TER++I +VE+EL
Sbjct: 442 FDAS-----KLK-HSREVWDFLPSIIRDQLLMDRESTGYIQVGKIATERLIIVLVESELA 495
Query: 415 KRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGN 474
K QF H+ GYEGRC P+NFD NYCYALG+ + L+ KTG ++ + N
Sbjct: 496 KLNDN-NLNIQFMA--HYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQN 552
Query: 475 LGEPVEEWTVGGTALTSLMHVERRH-GKFKPVIKKAMVELEGKPFKTFASLREDWTIKNL 533
L + W +MHV R + GK P +K+ +V+L F +R W++ +L
Sbjct: 553 LEDSYANWIPAAIPFLRIMHVNRDNTGKEFPAVKRYLVDLNSPLFNVLKEVRSLWSLYDL 612
Query: 534 YASPGPIQFSGPTANDINHTL 554
Y SPGPIQF+G +N +T+
Sbjct: 613 YRSPGPIQFNGHLSNSRCYTV 633
Score = 312 bits (801), Expect = 1e-93
Identities = 200/587 (34%), Positives = 302/587 (51%), Gaps = 58/587 (9%)
Query: 22 TELQISRMNVSLPLPSVLKNTFNVVDDAASSAAGDPEEIKKL---FPKFYGQPSARLVEC 78
+ELQ SR+ L LP + + V + DP K++ +P + ++ E
Sbjct: 765 SELQTSRLYNKLELPELCSDLKAKVRAGKQYISNDPYTQKQILSNYPHMSYENKFQIQEI 824
Query: 79 --DPMACTLMENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIM 136
D A + + +KIG+V QAPG NV+ G++ L+ KG + + G G++
Sbjct: 825 FHDKYATPI--SFEIKIGIVFLSRQAPGAMNVLCGLYRRLK-LLKGVCIAFY--GLYGLL 879
Query: 137 KCKFVELSSEFIYPYRNQGGFDMLC-SGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDD 195
K++ + + I + NQGG ++ S + E + ETV L L+GLV+ G +
Sbjct: 880 NNKYIIIDDDNIAKHVNQGGLELTGNSPEHSLFDKENRNKVCETVTNLQLNGLVMPGSNV 939
Query: 196 SNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTD 255
+ T A LLAE F K + T V+G P T +L + + GFD++ K ++ +IGNV+TD
Sbjct: 940 TITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYASLIGNVLTD 999
Query: 256 ARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICK 315
A S KY+HFIRLMGR+ SH LECALQTHPN+ II EE A TL V I D++C
Sbjct: 1000 AVSMPKYWHFIRLMGRSPSHEVLECALQTHPNMVIISEEYGAADKTLWRVVQDIADVVCA 1059
Query: 316 RSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEIL----------------------AHG 353
R+E G N+G VLI + L+ +P ++ L++E+++IL HG
Sbjct: 1060 RAELGKNYGTVLIPDALLMHLPHMKILLSEISDILNDANEKGQLVEARNDLVNLSTTQHG 1119
Query: 354 GVDRDGV-------------WKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIE 400
+ W KL S L + FP+ I K+LL D +++ K+E
Sbjct: 1120 HLGSTAGTVAGAEQPLSASPWVSKLTPWSLALLKTFPQFIIKELL-HVDLR-SMRFEKLE 1177
Query: 401 TERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANYCYALGFASGAL 460
TE++L+QMV+ EL++RKQKG Y G F G HFFGY+GR P+ FD Y+ G A+ +
Sbjct: 1178 TEQLLLQMVKEELHQRKQKGKYSGSFMGLTHFFGYQGRSSLPSEFDCKLAYSYGHAASIV 1237
Query: 461 LHAGKTGLIASVGNLGEPVEEWTVGGTALTSLMHVERRHGKFK----------PVIKKAM 510
+ +G TG I S+ L +++W + SLM + R K PVI A
Sbjct: 1238 IESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMKILPRGQGSKYLKSASKGDLPVIPSAP 1297
Query: 511 VELEGKPFKTFASLREDWTIKNLYASPGPIQFSGPTANDINHTLMLE 557
V+L GK +++ + W +++ + +PGPIQF G +N N L E
Sbjct: 1298 VDLNGKAYRSLKIALQKWQMEDRFCNPGPIQFEGNASNYYNRILFEE 1344
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have a
large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 377 bits (971), Expect = e-128
Identities = 134/434 (30%), Positives = 178/434 (41%), Gaps = 97/434 (22%)
Query: 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYP 150
KIGV+ SGG APG + I G+ +G ++YG G AG+++ EL E +
Sbjct: 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA--EGLEVYGIYEGYAGLVEGDIKELDWESVSD 58
Query: 151 YRNQGGFDMLCSGRDKI-ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRS 209
N+GG ++ S R K T E +A E +KK +D LVVIGGD S T A LL E + S
Sbjct: 59 IINRGGT-IIGSARCKEFRTEEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPS 117
Query: 210 KDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLM 269
K VIG P TID D+K + GFDTA KT E I + A SS + + +M
Sbjct: 118 KYQGFNVIGLPGTIDNDIK--GTDYTIGFDTALKTIVEAIDRIRDTA-SSHQRTFVVEVM 174
Query: 270 GRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLIS 329
GR I LE L T +I I EE AA + + D+I KR E G G+V
Sbjct: 175 GRHCGDIALEAGLATGADIIFIPEEPAAD-----EWEEEMVDVIKKRRERGKRHGIV--- 226
Query: 330 EGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERD 389
I+A G +D
Sbjct: 227 -------------------IVAEGAIDFIP------------------------------ 237
Query: 390 PHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDANY 449
K TE++L ++VE L F + G+ R G PT FD
Sbjct: 238 --------KPITEKLLAKLVEERL-----------GFDTRATVLGHVQRGGTPTAFDRIL 278
Query: 450 CYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTALTSLMHVERRHGKFKPVIKKA 509
LG + LL G G + NL E V LT +++ +R G
Sbjct: 279 ASRLGAEAVELLLEGTGGTPVGIQNL----NENQVVRHPLTEAVNMTKRVG--------- 325
Query: 510 MVELEGKPFKTFAS 523
V+LEG+PFK FA
Sbjct: 326 -VDLEGRPFKKFAK 338
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and
metabolism].
Length = 347
Score = 262 bits (673), Expect = 4e-83
Identities = 111/433 (25%), Positives = 163/433 (37%), Gaps = 89/433 (20%)
Query: 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFI 148
KI ++ SGG APG + VI + +G +++G G G+++ L+ E +
Sbjct: 1 MMKKIAILTSGGDAPGMNAVIRAVVRTA--IKEGLEVFGIYNGYLGLLEGDIKPLTREDV 58
Query: 149 YPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFR 208
N+GG + + + +T E K A E +KKL +D LVVIGGD S T A LLAE
Sbjct: 59 DDLINRGGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG- 117
Query: 209 SKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRL 268
V+G PKTID D+ D + GFDTA +T E I N+ D SS + + +
Sbjct: 118 ----GIPVVGVPKTIDNDISGTDF--TIGFDTALETAVEAIDNLR-DTASSHERIFIVEV 170
Query: 269 MGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLI 328
MGR A + L L T +I +LI
Sbjct: 171 MGRHAGWLALAAGLATGADI-------------------------------------ILI 193
Query: 329 SEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLER 388
E +++LIAE+ G + + E Q+
Sbjct: 194 PE--EPADLIIEELIAEIKAKREARGKKHAII--------------VVAEGAIDQI---- 233
Query: 389 DPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGFPTNFDAN 448
+G +A IE + G F + G+ R G P+ FD
Sbjct: 234 GENGAELLAAIE------------------ELLALGDFETRVTVLGHIQRGGTPSAFDRV 275
Query: 449 YCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTALTSLMHVERRHGKFKPVIKK 508
LG A+ LL GKTG + + N L +M +E IK
Sbjct: 276 LASRLGAAAVDLLLEGKTGYMVGIRNNKIVHVPIDEAVAPLKMVMSLEE----PDRSIKL 331
Query: 509 AMVELEGKPFKTF 521
+V+L + F
Sbjct: 332 DLVDLAKRLGIYF 344
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional.
Length = 320
Score = 128 bits (325), Expect = 3e-33
Identities = 84/283 (29%), Positives = 126/283 (44%), Gaps = 51/283 (18%)
Query: 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERT---KGSKLYGFRGGPAGIMKCKFVELSSEFI 148
+IGV+ SGG APG + I + RT +G ++YG G AG+++ V+L + +
Sbjct: 3 RIGVLTSGGDAPGMNAAIRAVV-----RTAISEGLEVYGIYDGYAGLLEGDIVKLDLKSV 57
Query: 149 YPYRNQGGFDMLCSGRDK-IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENF 207
N+GG +L S R + E +A E +KKL +D LVVIGGD S A L E
Sbjct: 58 SDIINRGG-TILGSARFPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTE-- 114
Query: 208 RSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYH--- 264
VIG P TID D+ D + GFDTA T E I + A S H
Sbjct: 115 ----HGIPVIGLPGTIDNDIAGTDY--TIGFDTALNTAVEAIDRLRDTASS-----HERV 163
Query: 265 -FIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNF 323
+ +MGR A + L + + +I E ++ + I K E G
Sbjct: 164 FIVEVMGRHAGDLALHAGIAGGAEVILIPEV----PFDIEELCAKIK----KGRERGKKH 215
Query: 324 GVVLISEGLIDFIPEVQQLIAELNE---------ILAH---GG 354
+++++EG++ ++L E+ E +L H GG
Sbjct: 216 AIIVVAEGVMP----AEELAKEIEERTGLETRVTVLGHIQRGG 254
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 113 bits (284), Expect = 9e-28
Identities = 79/243 (32%), Positives = 118/243 (48%), Gaps = 20/243 (8%)
Query: 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPY 151
KIG++ SGG APG + I + G ++YG R G G++ K L S+ +
Sbjct: 1 KIGILTSGGDAPGMNAAIRAVVRT--AIYHGFEVYGIRRGYKGLINGKIEPLESKNVSGI 58
Query: 152 RNQGGFDMLCSGR-DKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSK 210
++GG +L + R + +T E ++A E +KKL ++GLVVIGGD S T A L E
Sbjct: 59 IHRGG-TILGTARCPEFKTEEVREKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIP 117
Query: 211 DMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMG 270
VIG P TID D+ D I GFDTA T + + + A S + + I +MG
Sbjct: 118 -----VIGLPGTIDNDIPGTDYTI--GFDTALNTIIDAVDKIRDTATSHERAF-VIEVMG 169
Query: 271 RAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISE 330
R A + L + T I II E D + + ++ EAG +++++E
Sbjct: 170 RHAGDLALYAGIATGAEIIIIPE--------FDYDIDELIQRLKEQHEAGKKHSIIIVAE 221
Query: 331 GLI 333
G I
Sbjct: 222 GNI 224
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase. Members of this family
that are characterized, save one, are
phosphofructokinases dependent on pyrophosphate (EC
2.7.1.90) rather than ATP (EC 2.7.1.11). The exception
is one of three phosphofructokinases from Streptomyces
coelicolor. Family members are both bacterial and
archaeal [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 324
Score = 111 bits (280), Expect = 4e-27
Identities = 74/258 (28%), Positives = 111/258 (43%), Gaps = 52/258 (20%)
Query: 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSS----EF 147
+IGV+ GG PG + VI G+ G ++ G R G G+++ V L
Sbjct: 1 RIGVLTGGGDCPGLNAVIRGVV-RRAIAEYGWEVIGIRDGWRGLLEGDTVPLLDLEDVRG 59
Query: 148 IYPYRNQGG----------FDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSN 197
I P +GG F G DKI +K+L LD L+ IGGD +
Sbjct: 60 ILP---RGGTILGSSRTNPFKYEEDGDDKIV---------ANLKELGLDALIAIGGDGTL 107
Query: 198 TNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDAR 257
A LA+ V+G PKTID DL+ D +FGFDTA + +E + + T A
Sbjct: 108 GIARRLADK------GLPVVGVPKTIDNDLEATDY--TFGFDTAVEIATEALDRLHTTAE 159
Query: 258 SSGKYYH----FIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDII 313
S H + +MGR A I L + ++ +I E + +V + +
Sbjct: 160 S-----HHRVMVVEVMGRHAGWIALHSGIAGGADVILIPE----IPFDIDSVCEKVR--- 207
Query: 314 CKRSEAGYNFGVVLISEG 331
+R G F +V+++EG
Sbjct: 208 -ERFARGKRFAIVVVAEG 224
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include bacterial ATP-dependent
phosphofructokinases. These are allosrterically
regulated homotetramers; the subunits are of about 320
amino acids.
Length = 317
Score = 109 bits (273), Expect = 3e-26
Identities = 83/267 (31%), Positives = 119/267 (44%), Gaps = 30/267 (11%)
Query: 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPY 151
+IGV+ SGG APG + I G+ +G ++YG R G AG++ V L +
Sbjct: 2 RIGVLTSGGDAPGMNAAIRGVVR--SAIAEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDI 59
Query: 152 RNQGGFDMLCSGR-DKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSK 210
N+GG L S R + + E +A E +KK +D LVVIGGD S A L E
Sbjct: 60 INRGG-TFLGSARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTE----- 113
Query: 211 DMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMG 270
+G P TID D+ D I GFDTA T E I + + D SS + + +MG
Sbjct: 114 -HGFPCVGLPGTIDNDIPGTDYTI--GFDTALNTVVEAI-DRIRDTSSSHQRISVVEVMG 169
Query: 271 RAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRS-EAGYNFGVVLIS 329
R I L + +I E + + V + I K E G +V+++
Sbjct: 170 RHCGDIALAAGIAGGAEFIVIPEA----EFDREEVANRI-----KAGIERGKKHAIVVVA 220
Query: 330 EGLIDFIPEVQQLIAELNEILAHGGVD 356
EG+ D V +L E+ E G +
Sbjct: 221 EGVYD----VDELAKEIEE---ATGFE 240
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase.
Length = 279
Score = 105 bits (263), Expect = 3e-25
Identities = 78/266 (29%), Positives = 116/266 (43%), Gaps = 25/266 (9%)
Query: 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPY 151
KIGV+ SGG APG + I + +G ++YG G AG++ +L E +
Sbjct: 2 KIGVLTSGGDAPGMNAAIRAVVR--SAIAEGLEVYGIYEGYAGLVAGNIKQLDWESVSDI 59
Query: 152 RNQGGFDMLCSGRDK-IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSK 210
+GG + S R E +A E +KK +D LVVIGGD S T A LL
Sbjct: 60 IQRGG-TFIGSARCPEFREREGRLKAAENLKKHGIDALVVIGGDGSYTGADLLTS----- 113
Query: 211 DMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMG 270
+ +G P TID D+ D I GFDTA T E I + A S + + + +MG
Sbjct: 114 EHGFNCVGLPGTIDNDICGTDYTI--GFDTALNTIVEAIDRIRDTASSHQRTF-VVEVMG 170
Query: 271 RAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISE 330
R + L + + I E A + + + + + E G +V+++E
Sbjct: 171 RHCGDLALVAGIAGGADYIFIPE--APFW------EEELCNRLKRGRERGKRHNIVIVAE 222
Query: 331 GLIDFIPEVQQLIAELNEILAHGGVD 356
G ID P + + +L GG D
Sbjct: 223 GAID--PITSEFVKKLVV---EGGYD 243
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
Length = 459
Score = 92.0 bits (229), Expect = 9e-20
Identities = 66/247 (26%), Positives = 114/247 (46%), Gaps = 23/247 (9%)
Query: 89 KSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFI 148
K +K G+V GG PG + VI + L +YG + G G+ K +++L + +
Sbjct: 86 KEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDV 145
Query: 149 YPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFR 208
GG +L S R K +T+ + ++ L +GGD ++ A + + R
Sbjct: 146 KTIHRLGG-TILGSSR----GGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELR 200
Query: 209 SKDMKTRVIGCPKTIDGDLKCKDVPI---SFGFDTACKTFSEVIGNVMTDARSSGKYYHF 265
+ + V+G PKTID D+ PI SFGF TA + I +A+S+
Sbjct: 201 RRKLNISVVGIPKTIDNDI-----PIIDESFGFQTAVEEAQNAIRAAYVEAKSAKNGVGI 255
Query: 266 IRLMGRAASHITLECALQT-HPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFG 324
++LMGR + I L ++ + N+ +I E + L+ V +YI + K+
Sbjct: 256 VKLMGRDSGFIALHASVASADVNVCLIPE----FDIPLEGVLEYIEQRLQKKGHC----- 306
Query: 325 VVLISEG 331
V++++EG
Sbjct: 307 VIVVAEG 313
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 70.9 bits (174), Expect = 3e-13
Identities = 74/260 (28%), Positives = 117/260 (45%), Gaps = 35/260 (13%)
Query: 85 LMENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMK--CKFVE 142
+ E K +IG++ SGG G + VI + + T G ++ G R G+M +++E
Sbjct: 1 MGEKK--RIGILTSGGDCAGLNAVIRAVV-HRARGTYGWEVIGIRDATQGLMARPPQYIE 57
Query: 143 LSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVK-----------KLDLDGLVVI 191
L + + GG +L G P F + +++ L LD L+ I
Sbjct: 58 LDLDQVDDLLRMGG-TIL--GTTNKGDPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGI 114
Query: 192 GGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGN 251
GGD S +L + + ++G PKTID D+ +V I GFDTA +E +
Sbjct: 115 GGDGS---LAILRRLAQQGGIN--LVGIPKTIDNDVGATEVSI--GFDTAVNIATEALDR 167
Query: 252 VMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITD 311
+ A S + + +MGR A HI L + ++ +I EI TL+NV
Sbjct: 168 LHFTAASHNRVM-ILEVMGRDAGHIALAAGIAGGADVILI-PEIP---YTLENV----CK 218
Query: 312 IICKRSEAGYNFGVVLISEG 331
I +R E G NF +V++SE
Sbjct: 219 KIRERQEEGKNFCLVVVSEA 238
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 443
Score = 71.1 bits (175), Expect = 5e-13
Identities = 66/210 (31%), Positives = 93/210 (44%), Gaps = 17/210 (8%)
Query: 91 LKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAG-IMKC--KFVELSSEF 147
+K +V GG PG ++VI I L ++ G R G G I + VEL+ E
Sbjct: 81 VKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEV 140
Query: 148 IYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDG---LVVIGGDDSNTNACLLA 204
+ GG +L S R + EE V L+ L VIGGD + A +A
Sbjct: 141 VADIHEFGG-TILGSSRGPQD-------PEEIVDTLERMNINILFVIGGDGTLRGASAIA 192
Query: 205 ENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYH 264
E + +K VIG PKTID D+ + SFGF+TA + +E I +A +
Sbjct: 193 EEIERRGLKISVIGIPKTIDNDINF--IQKSFGFETAVEKATEAIRCAHVEANGAPNGIG 250
Query: 265 FIRLMGRAASHITLECAL-QTHPNIAIIGE 293
++LMGR + I AL N +I E
Sbjct: 251 LVKLMGRHSGFIAAYAALASKDVNFVLIPE 280
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 69.1 bits (169), Expect = 2e-12
Identities = 65/250 (26%), Positives = 114/250 (45%), Gaps = 38/250 (15%)
Query: 68 YGQPSARLVECDPMACTLMEN---------------KSLKIGVVLSGGQAPGGHNVIAGI 112
Y P++ EC C+ +E + +K +V GG PG ++VI I
Sbjct: 16 YSSPTSAGAECIDPDCSWVEQWVHRAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQI 75
Query: 113 FDYLQ----ERTKGSKLYGFRG-GPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKI 167
L+ + G +G+RG G+ + + LS + + GG +L R
Sbjct: 76 VFTLEIYGVKNIVGIP-FGYRGFFEKGLSE---MPLSRKVVQNIHLSGG-SLLGVSRGGA 130
Query: 168 ETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDL 227
+T + ++++ ++ L V+GG+ ++ A + R + MK V+G PKTID D+
Sbjct: 131 KTSDIV----DSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDI 186
Query: 228 KCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYH---FIRLMGRAASHITLECALQT 284
D +FGFDTA + I + +A S+ YH ++LMGR++ I + +L +
Sbjct: 187 LLMDK--TFGFDTAVEEAQRAINSAYIEAHSA---YHGIGLVKLMGRSSGFIAMHASLAS 241
Query: 285 -HPNIAIIGE 293
+I +I E
Sbjct: 242 GQVDICLIPE 251
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
Length = 484
Score = 60.9 bits (148), Expect = 9e-10
Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 7/188 (3%)
Query: 95 VVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQ 154
+V GG PG + VI I L +++ G GG G + L+ + + +
Sbjct: 92 IVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKR 151
Query: 155 GGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKT 214
GG +L + R +T + ++++ ++ + +IGGD + A ++ E R + +K
Sbjct: 152 GG-TILGTSRGGHDT----SKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKV 206
Query: 215 RVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAAS 274
V G PKTID D+ D SFGFDTA + I +A S ++LMGR +
Sbjct: 207 AVAGIPKTIDNDIPVIDK--SFGFDTAVEEAQRAINAAHVEAESVENGIGLVKLMGRYSG 264
Query: 275 HITLECAL 282
I + L
Sbjct: 265 FIAMYATL 272
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a human
skin commensal).
Length = 746
Score = 59.3 bits (144), Expect = 4e-09
Identities = 67/269 (24%), Positives = 110/269 (40%), Gaps = 43/269 (15%)
Query: 92 KIGVVLSGGQAPGGHNVI-----AGIFDYLQERTKGSKLYGFRGGPAGIMK--CKFVELS 144
+I V+ SGG A G + + I+ G ++Y R G G++ E
Sbjct: 2 RIAVLTSGGDAQGMNAAVRAVVRMAIY-------VGCRVYAIREGYQGLVDGGDNIEEAQ 54
Query: 145 SEFIYPYRNQGGFDMLCSGRDK--IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNA-- 200
E + + GG ++ + R K E P + K A V +D LVVIGGD S T A
Sbjct: 55 WEDVRGILSLGG-TIIGTARCKEFRERPGRLKAARNLVSN-GIDALVVIGGDGSLTGADL 112
Query: 201 ------CLLAENFRSKDMKTRV---------IGCPKTIDGDLKCKDVPISFGFDTACKTF 245
LL E + + +G +ID D+ D+ I G D+A
Sbjct: 113 FREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTI--GADSALHRI 170
Query: 246 SEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNV 305
E I + + A+S + + + +MGR ++ L A+ T + I E +
Sbjct: 171 CEAIDAISSTAQSHQRAF-VVEVMGRHCGYLALMAAIATGADYVFIPERPPE-----EGW 224
Query: 306 TDYITDIICKRSEAGYNFGVVLISEGLID 334
D + + + +AG +V+++EG ID
Sbjct: 225 EDQLCHKLKRNRKAGKRKTIVIVAEGAID 253
Score = 46.6 bits (111), Expect = 3e-05
Identities = 57/267 (21%), Positives = 105/267 (39%), Gaps = 25/267 (9%)
Query: 87 ENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSE 146
E L+I ++ G A G + Y +G + G +G+ + EL+
Sbjct: 386 EASRLRIAIIHVGAPAGGMNAATRSAVRYAL--ARGHTVIAIHNGFSGLARHDVRELTWS 443
Query: 147 FIYPYRNQGGFDMLCSGRDKIETPE-QFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAE 205
+ + +GG L + R P ++ +DGL++IGG ++ L
Sbjct: 444 DVEGWVGEGG-SELGTNR---SLPGDDLGTIAYYFQQHKIDGLIIIGGFEAFEALYQLDA 499
Query: 206 NFRSKDMKTRV--IGCPKTIDGDLKCKDVP---ISFGFDTACKTFSEVIGNVMTDARSSG 260
R K R+ + P TI +VP S G DTA +E N+ A +S
Sbjct: 500 A-REKYPAFRIPMVVIPATIS-----NNVPGTEYSLGSDTALNEITEYCDNIKQSASASK 553
Query: 261 KYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAG 320
+ + MG + ++ L T + A I EE ++LK++ + I + + + G
Sbjct: 554 RRVFVVETMGGYSGYLATMAGLATGADAAYIPEE----GISLKDLQEDI-EHLKETFAEG 608
Query: 321 YNFGVVLISEGLIDFI--PEVQQLIAE 345
++L +E + ++I+E
Sbjct: 609 RAGKLILRNEKASKVYTTDFIARIISE 635
>gnl|CDD|237600 PRK14072, PRK14072, 6-phosphofructokinase; Provisional.
Length = 416
Score = 56.4 bits (137), Expect = 2e-08
Identities = 70/267 (26%), Positives = 112/267 (41%), Gaps = 46/267 (17%)
Query: 100 GQAPGGHNVI----AGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQG 155
Q+ G VI AG+ + ++ K K+YG R G GI+ ++LS E +
Sbjct: 9 AQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKE------SDE 62
Query: 156 GFDMLC--------SGRDKIETPEQFKQAE-----ETVKKLDLDGLVVIGGDDSNTNACL 202
L S R K+++ E+ +AE E K D+ GG+DS A
Sbjct: 63 ALAALAHTPSGALGSCRYKLKSLEE-DRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALK 121
Query: 203 LAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARS---S 259
+++ + R IG PKTID DL D GF +A K + + D + +
Sbjct: 122 VSQLAKKMGYPIRCIGIPKTIDNDLPGTDH--CPGFGSAAKYIATSVLEAALDVAAMANT 179
Query: 260 GKYYHFIRLMGRAASHITLECAL-QTHPNIA---IIGEEIAAKKLTLKNVTDYITDIICK 315
K + + +MGR A + AL + +P+ A I E + ++ D+ +
Sbjct: 180 SKVF-ILEVMGRHAGWLAAAAALAKQNPDDAPHLIYLPERPF------DEEKFLADV--R 230
Query: 316 RSEAGYNFGVVLISEGLID----FIPE 338
Y + VV++SEG+ D FI E
Sbjct: 231 AIVKRYGYCVVVVSEGIRDADGKFIAE 257
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Validated.
Length = 403
Score = 53.1 bits (128), Expect = 2e-07
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 174 KQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVP 233
K A E + +D L IGGDD+NT A LA V+G PKTID D+ VP
Sbjct: 102 KVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDV----VP 157
Query: 234 I--SFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECA 281
I S G TA + + NV+ + ++ + +MGR +T A
Sbjct: 158 IRQSLGAWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATA 207
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include eukaryotic ATP-dependent
phosphofructokinases. These have evolved from the
bacterial PFKs by gene duplication and fusion events and
exhibit complex allosteric behavior.
Length = 762
Score = 51.7 bits (124), Expect = 9e-07
Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 49/272 (18%)
Query: 92 KIGVVLSGGQAPG-GHNVIA----GIFDYLQERTKGSKLYGFRGGPAGIMKC--KFVELS 144
I V+ SGG A G V A GI+ G+K++ G G++K +
Sbjct: 5 AIAVLTSGGDAQGMNAAVRAVVRMGIY-------VGAKVFFVYEGYEGLVKGGDYIKQAE 57
Query: 145 SEFIYPYRNQGGFDMLCSGRDK-IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLL 203
E + + +GG ++ S R K E QA + + + L VIGGD S T A L
Sbjct: 58 WESVSNWLQEGG-TIIGSARCKEFREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADL- 115
Query: 204 AENFRS----------------KDMKTR-----VIGCPKTIDGDLKCKDVPISFGFDTAC 242
FRS ++ + ++G +ID D D+ I G D+A
Sbjct: 116 ---FRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTI--GTDSAL 170
Query: 243 KTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTL 302
EV+ + T A+S + + + +MGR ++ L L T + I E
Sbjct: 171 HRICEVVDAITTTAQSHQRTF-VLEVMGRHCGYLALVSGLATGADWIFIPERPPEDGW-- 227
Query: 303 KNVTDYITDIICKRSEAGYNFGVVLISEGLID 334
D + + + G +++++EG ID
Sbjct: 228 ---EDQMCRRLSEHRSRGKRLNIIIVAEGAID 256
Score = 33.6 bits (77), Expect = 0.34
Identities = 44/212 (20%), Positives = 81/212 (38%), Gaps = 10/212 (4%)
Query: 85 LMENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELS 144
L E +L I +V G A G + + Y G + Y G G+ K + VEL
Sbjct: 384 LPEKTNLNIAIVNVGAPAAGMNAAVRSAVRYGL--AHGHRPYAIYDGFEGLAKGQIVELG 441
Query: 145 SEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLA 204
+ + +GG ++ G + + + +K +DGL+++GG ++ L
Sbjct: 442 WIDVGGWTGRGGSEL---GTKRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLR 498
Query: 205 ENFRSKDMKTRVIGC--PKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKY 262
E R + + + P T+ ++ D S G DTA + + A + +
Sbjct: 499 EA-REQYEEFCIPMVLIPATVSNNVPGTD--FSLGSDTALNALMKYCDRIKQSASGTKRR 555
Query: 263 YHFIRLMGRAASHITLECALQTHPNIAIIGEE 294
+ MG ++ L + A + EE
Sbjct: 556 VFIVETMGGYCGYLATMTGLAVGADAAYVFEE 587
>gnl|CDD|225233 COG2358, Imp, TRAP-type uncharacterized transport system,
periplasmic component [General function prediction
only].
Length = 321
Score = 33.1 bits (76), Expect = 0.31
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 285 HPNIAIIGEEIAAK-KLTLKNVTDYITDIICKRSEAGYNFGVVLISEGLIDFIPEVQQLI 343
PN AI E+A + L ++ + I K E + I G I E +
Sbjct: 196 VPNPAI--SELATTCDIVLVPISG---EEIDKLEEKYPYYAKATIPAGTYPGIDEDIPTV 250
Query: 344 AELNEILAHGGVDRDGVWK 362
A ++ V D V+K
Sbjct: 251 AVAAILVTSDDVSEDLVYK 269
>gnl|CDD|235007 PRK02134, PRK02134, hypothetical protein; Provisional.
Length = 249
Score = 31.5 bits (72), Expect = 0.98
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 262 YYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKK 299
Y F+ L GR +H+ + P I I AA+
Sbjct: 109 YERFLSLFGRKPTHLDSHHHVHMLPQIFPIVARFAAEY 146
>gnl|CDD|220489 pfam09952, DUF2186, Uncharacterized protein conserved in bacteria
(DUF2186). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 143
Score = 30.4 bits (69), Expect = 1.2
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 365 LKSQSQELF---ELFPEEIQKQLLLERDPHGNVQV 396
LK S L+ F ++ K+L L DP GNV++
Sbjct: 62 LKPGSATLYVSPPKFTPDLLKRLRLRPDPAGNVEL 96
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 31.4 bits (72), Expect = 1.6
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 293 EEIAAKKLTL-KNVTDYITDIICKRSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILA 351
EI +K L K + D I +I+ K G + +V + E I E + E
Sbjct: 477 YEIHFEKAMLDKELNDTIENILSKL--LGKSVEIVAVPEDEWQKIREEFLQKHKNEEEEE 534
Query: 352 HGGVDRDGVWKKKLKSQSQELFELFPEEI 380
+++ E ELF E++
Sbjct: 535 E---------EEEELPLIPEAKELFGEDL 554
>gnl|CDD|179791 PRK04214, rbn, ribonuclease BN/unknown domain fusion protein;
Reviewed.
Length = 412
Score = 30.9 bits (70), Expect = 1.8
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 338 EVQQLIAELNEILAHGGVDRD--GVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQ 395
E+ +L+ EL G + R G W S L EL+ + + L D G
Sbjct: 326 ELGELLCELAR---IGLLRRGERGQWVLARDLDSVPLAELYELFVLRPLPCRDDHVGQAA 382
Query: 396 VAKIE----TERMLIQMVEAELNKRKQ 418
A + R + A+L R+
Sbjct: 383 DAALTQLRQPLRETLAEFVADLYTRQP 409
>gnl|CDD|234032 TIGR02855, spore_yabG, sporulation peptidase YabG. Members of this
family are the protein YabG, demonstrated for Bacillus
subtilis to be an endopeptidase able to release
N-terminal peptides from a number of sporulation
proteins, including CotT, CotF, and SpoIVA. It appears
to be expressed under control of sigma-K [Cellular
processes, Sporulation and germination].
Length = 283
Score = 30.0 bits (68), Expect = 3.3
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 378 EEIQKQLLLERDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEG 437
E + + +R ++ET L + + +L K K++ G + +FG G
Sbjct: 50 ELVDESERKKRK---KRFKERMETSYRLFRQ-DYKLMKEKKEYRATGGYKNNQLYFGMPG 105
Query: 438 R 438
R
Sbjct: 106 R 106
>gnl|CDD|224872 COG1961, PinR, Site-specific recombinases, DNA invertase Pin
homologs [DNA replication, recombination, and repair].
Length = 222
Score = 29.8 bits (67), Expect = 3.4
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 337 PEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQV 396
P +Q+L+ ++ E G D V+K +S E + ++ + N+
Sbjct: 51 PGLQRLLEDIEE-----GKDTLVVYKLDRLGRSLSDLLQLLELLAEKGITLISLAENIFD 105
Query: 397 AKIETERMLIQMV----EAELNKRKQK 419
R+++ ++ E E ++
Sbjct: 106 TSSPMGRLMLMILAALAEFERELISER 132
>gnl|CDD|235029 PRK02308, uvsE, putative UV damage endonuclease; Provisional.
Length = 303
Score = 29.9 bits (68), Expect = 3.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 343 IAELNEILAH-GGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERD 389
I + ++I H GG D K+K + E + PE I+K+L LE D
Sbjct: 144 IDDSSKINIHVGGAYGD---KEKALERFIENIKKLPESIKKRLTLEND 188
>gnl|CDD|198335 cd10302, GST_C_GDAP1L1, C-terminal, alpha helical domain of
Ganglioside-induced differentiation-associated protein
1-like 1. Glutathione S-transferase (GST) C-terminal
domain family, Ganglioside-induced
differentiation-associated protein 1-like 1 (GDAP1L1)
subfamily; GDAP1L1 is a paralogue of GDAP1 with about
56% sequence identity and 70% similarity. It's function
is unknown. Like GDAP1, it does not exhibit GST activity
using standard substrates. GDAP1 was originally
identified as a highly expressed gene at the
differentiated stage of GD3 synthase-transfected cells.
More recently, mutations in GDAP1 have been reported to
cause both axonal and demyelinating autosomal-recessive
Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is
characterized by slow and progressive weakness and
atrophy of muscles. Sequence analysis of GDAP1 shows
similarities and differences with GSTs; it appears to
contain both N-terminal thioredoxin-fold and C-terminal
alpha helical domains of GSTs, however, it also contains
additional C-terminal transmembrane domains unlike GSTs.
GDAP1 is mainly expressed in neuronal cells and is
localized in the mitochondria through its transmembrane
domains.
Length = 111
Score = 28.1 bits (62), Expect = 4.5
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 381 QKQLLLERDPHGNVQ-VAKIETE-RMLIQMVEAELNKRKQKGTYKGQ 425
QK+L+ + H NV + KI E M++ +EAEL KRK + Y+GQ
Sbjct: 11 QKKLMAKILEHDNVNYLKKILGELAMVLDQIEAELEKRKLE--YEGQ 55
>gnl|CDD|215359 PLN02667, PLN02667, inositol polyphosphate multikinase.
Length = 286
Score = 29.3 bits (66), Expect = 4.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 51 SSAAGDPEEIKKLFPKFYG 69
SS P+ I++ FP F+G
Sbjct: 50 SSDTRVPDHIRRFFPVFHG 68
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 29.8 bits (67), Expect = 5.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 75 LVECDPMACTLMENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTK 121
LVE A T + + S + G L G V A I +YL E+++
Sbjct: 131 LVEAFGNARTGINDNSSRFGKYLEMKFTRSGAVVGARISEYLLEKSR 177
>gnl|CDD|224725 COG1812, MetK, Archaeal S-adenosylmethionine synthetase [Amino acid
transport and metabolism].
Length = 400
Score = 29.6 bits (67), Expect = 5.4
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 346 LNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKI-ETERM 404
L E L + V+ + ++ S +L ++F + ++ L D V A + ETER
Sbjct: 115 LRENLRNLDVENHVIIDVRIGQGSVDLVDVFERAKE-EVPLANDTSFGVGFAPLSETER- 172
Query: 405 LIQMVEAELNKRKQK 419
L+ E LN + K
Sbjct: 173 LVLETERYLNSPEFK 187
>gnl|CDD|225293 COG2445, COG2445, Uncharacterized conserved protein [Function
unknown].
Length = 138
Score = 28.4 bits (64), Expect = 5.7
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 309 ITDIICKRSEAGYNFGVVLISEGLIDFIPEVQQLIAELN---EILAH--GGVDRDGVWKK 363
I+ + + +L+ EG+I E + + ++ IL H VD +
Sbjct: 56 ISKFGLRDPGTYDDCIDILVEEGVIP--EEEAEELKKMVGFRNILVHRYWAVD-PEKVYR 112
Query: 364 KLKSQSQELFELFPEEIQKQLLLERDP 390
LK + E +E F EEI+K L LE P
Sbjct: 113 SLK-ELLEDYENFLEEIRKLLELEEGP 138
>gnl|CDD|226372 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria
[Function unknown].
Length = 308
Score = 29.0 bits (65), Expect = 6.8
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 22/81 (27%)
Query: 370 QELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQ 429
+E+F + PE+I+ Q+L E N++ +I R L F GQ
Sbjct: 4 EEIFSILPEKIR-QILKEIPDRNNLEEVRIRVNRPLE-----------------AIFPGQ 45
Query: 430 PHFFGYEGRCGFPTNFDANYC 450
P + Y G T D
Sbjct: 46 PVYLSYIG----VTKEDLQKT 62
>gnl|CDD|185750 cd09237, V_ScBro1_like, Protein-interacting V-domain of
Saccharomyces cerevisiae Bro1 and related domains. This
family contains the V-shaped (V) domain of Saccharomyces
cerevisiae Bro1, and related domains. It belongs to the
V_Alix_like superfamily which also includes the V-domain
of Saccharomyces cerevisiae Rim20 (also known as PalA),
mammalian Alix (apoptosis-linked gene-2 interacting
protein X), His-Domain type N23 protein tyrosine
phosphatase (HD-PTP, also known as PTPN23), and related
domains. Bro1 interacts with the ESCRT (Endosomal
Sorting Complexes Required for Transport) system, and
participates in endosomal trafficking. The mammalian
Alix V-domain (belonging to a different family) contains
a binding site, partially conserved in the superfamily,
for the retroviral late assembly (L) domain YPXnL motif.
The Alix V-domain is also a dimerization domain. Bro1
also has an N-terminal Bro1-like domain, which binds
Snf7, a component of the ESCRT-III complex, and a
C-terminal proline-rich region (PRR). The C-terminal
portion (V-domain and PRR) of S. cerevisiae Bro1
interacts with Doa4, a ubiquitin thiolesterase needed to
remove ubiquitin from MVB cargoes. It interacts with a
YPxL motif in the Doa4s catalytic domain to stimulate
its deubiquitination activity.
Length = 356
Score = 29.2 bits (66), Expect = 7.0
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 366 KSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQMVEAELNK 415
KS+S+ +LFPEE++K P N A I + LI ++ EL+K
Sbjct: 242 KSKSEIEKQLFPEELEK-----FKPLQNRLEATIFKQSSLINELKIELDK 286
>gnl|CDD|218368 pfam04992, RNA_pol_Rpb1_6, RNA polymerase Rpb1, domain 6. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 6, represents a mobile module of the RNA
polymerase. Domain 6 forms part of the shelf module.
This family appears to be specific to the largest
subunit of RNA polymerase II.
Length = 187
Score = 28.6 bits (65), Expect = 7.2
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 178 ETVKKLDLDGLVVIGGDDS-----NTNACLL 203
E V++L LD LVV+ GDD NA LL
Sbjct: 119 EGVREL-LDRLVVVRGDDPLSKEAQENATLL 148
>gnl|CDD|152725 pfam12290, DUF3802, Protein of unknown function (DUF3802). This
family of proteins is found in bacteria. Proteins in
this family are typically between 114 and 143 amino
acids in length. There is a conserved KNLFD sequence
motif.
Length = 114
Score = 27.3 bits (61), Expect = 8.9
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 17/59 (28%)
Query: 334 DFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELF---------ELFPEEIQKQ 383
D I EV ++ +L E+LA GVW + + Q F LF EI K
Sbjct: 64 DVIREVDAIVYDLEEVLA-------GVWNQPA-TPEQIAFIEEFIGLIKNLFDSEIAKL 114
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.400
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,309,938
Number of extensions: 2935872
Number of successful extensions: 2876
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2790
Number of HSP's successfully gapped: 59
Length of query: 570
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 468
Effective length of database: 6,413,494
Effective search space: 3001515192
Effective search space used: 3001515192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.9 bits)