RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 008310
(570 letters)
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 682 bits (1761), Expect = 0.0
Identities = 252/554 (45%), Positives = 358/554 (64%), Gaps = 19/554 (3%)
Query: 23 ELQISRMNVSLPLPSVLKNTFNVV---DDAASSAAGDPEEIKKLFPKFYGQPSARLVECD 79
+ R LP++LK FN + + A D + +K+ F YG P E +
Sbjct: 5 LFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGE 64
Query: 80 PMACTLMENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCK 139
+L +K+L IG++LSGG APGGHNVI+G+FD +++ SKL+GF+GGP G+++
Sbjct: 65 S---SLSFSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLEND 121
Query: 140 FVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTN 199
+EL+ I YRN GGFD++ SGR KIET E + +A K+ +L+ +++IGGDDSNTN
Sbjct: 122 KIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTN 181
Query: 200 ACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSS 259
A +LAE F+ +VIG PKTID DL+ + ISFGFD+A K +SE+IGN+ DA S+
Sbjct: 182 AAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMST 241
Query: 260 GKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEA 319
KY+HF++LMGR+ASH+ LECAL+THPNI I+ EE+ AKK TL + D + +I KRS
Sbjct: 242 KKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLN 301
Query: 320 GYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGV--------WKKKLKSQSQE 371
G NFGVV++ EGLI+FIPEV+ L+ EL +I + G+ + KL +
Sbjct: 302 GDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKG 361
Query: 372 LFELFPEEIQKQL---LLERDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTG 428
++ P IQ +L +LERDPHGN V+++ TE++ I+M+++ LN K++G YKG FT
Sbjct: 362 VYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTP 421
Query: 429 QPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTA 488
HFFGYEGR FP+NFD++YCY+LG+ + L+ G TG ++ + NL +W GG
Sbjct: 422 VDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVP 481
Query: 489 LTSLMHVERRHGKFKPVIKKAMVELEGKPFKTFASLREDWTIKNLYASPGPIQFSGPTAN 548
LT LM++E R+G+ KPVIKKA+V+LEG+PFK F R+ W + NLY PGP+Q+ G +
Sbjct: 482 LTMLMNMEERYGEKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEI 541
Query: 549 D--INHTLMLELGQ 560
I TL LEL +
Sbjct: 542 VDEITETLKLELFK 555
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 144 bits (366), Expect = 9e-38
Identities = 88/394 (22%), Positives = 150/394 (38%), Gaps = 71/394 (18%)
Query: 86 MENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMK---CKFVE 142
IG+V GG PG ++VI I ++ GFR G G+ K +E
Sbjct: 93 FNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIE 152
Query: 143 LSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACL 202
L + + GG +L S R P+ K+ +T+++L ++ L +GGD + A +
Sbjct: 153 LHRGRVTNIHHYGG-TILGSSR----GPQDPKEMVDTLERLGVNILFTVGGDGTQRGALV 207
Query: 203 LAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKY 262
+++ + + + V G PKTID DL +FGF TA + + I +A S+
Sbjct: 208 ISQEAKRRGVDISVFGVPKTIDNDLSFSHR--TFGFQTAVEKAVQAIRAAYAEAVSANYG 265
Query: 263 YHFIRLMGRAASHITLECALQTHP-NIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGY 321
++LMGR + I + A+ + NI ++ E ++ + V + +R
Sbjct: 266 VGVVKLMGRDSGFIAAQAAVASAQANICLVPEN----PISEQEVMSLL-----ERRFCHS 316
Query: 322 NFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQ 381
V++++EG + GG D G KKL L E+++
Sbjct: 317 RSCVIIVAEG------------FGQDWGRGSGGYDASG--NKKLIDIGVIL----TEKVK 358
Query: 382 KQLLLERDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTGQPHFFGYEGRCGF 441
L + + + V + + Y R
Sbjct: 359 AFLKANKSRYPDSTV------KYID--------------------------PSYMIRACP 386
Query: 442 PTNFDANYCYALGFASGALLHAGKTG-LIASVGN 474
P+ DA +C L + AG TG +IA N
Sbjct: 387 PSANDALFCATLATLAVHEAMAGATGCIIAMRHN 420
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 132 bits (334), Expect = 1e-34
Identities = 75/262 (28%), Positives = 111/262 (42%), Gaps = 36/262 (13%)
Query: 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERT---KGSKLYGFRGGPAGIMKCKFVELSSEFI 148
KIGV+ SGG APG + I G+ R+ +G ++ G G G+ + + V+L +
Sbjct: 4 KIGVLTSGGDAPGMNAAIRGVV-----RSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSV 58
Query: 149 YPYRNQGGFDMLCSGRDK-IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENF 207
N+GG L S R A E +KK +D LVVIGGD S A L E
Sbjct: 59 SDMINRGG-TFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE-- 115
Query: 208 RSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYH--- 264
M IG P TID D+K D + GF TA T E I + + S H
Sbjct: 116 ----MGFPCIGLPGTIDNDIKGTDY--TIGFFTALSTVVEAIDRLRDTSSS-----HQRI 164
Query: 265 -FIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNF 323
+ +MGR +TL A+ ++ E + + + + + I G
Sbjct: 165 SVVEVMGRYCGDLTLAAAIAGGCEFVVVPEV----EFSR----EDLVNEIKAGIAKGKKH 216
Query: 324 GVVLISEGLIDFIPEVQQLIAE 345
+V I+E + D + E+ I +
Sbjct: 217 AIVAITEHMCD-VDELAHFIEK 237
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 132 bits (335), Expect = 4e-34
Identities = 71/432 (16%), Positives = 136/432 (31%), Gaps = 89/432 (20%)
Query: 86 MENKSLKIGVVLSGGQAPGGHNVIAGIFDY-LQERTKGSKLYGFRGGPAGIMKCKFVELS 144
M K SGG + AG+ + ++ K ++Y R G G + ++
Sbjct: 1 MAAK--NAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTG 58
Query: 145 SE---FIYPYRNQGGFDMLCSGRDKI----ETPEQFKQAEETVKKLDLDGLVVIGGDDSN 197
E I R S R K+ + ++++ E K D+ GG DS
Sbjct: 59 QESDAAISALRYTPS-GAFGSCRYKLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSA 117
Query: 198 TNACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACK----TFSEVIGNVM 253
+++ + + I PKT+D DL D GF + K + E +V
Sbjct: 118 DTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDC--CPGFGSVAKYIAVSTLEASFDVA 175
Query: 254 TDARSSGKYYHFIRLMGRAASHITLECAL-----QTHPNIAIIGEEIAAKKLTLKNVTDY 308
+ + +S K + +MGR A I L + P + + E +
Sbjct: 176 SMSATSTK-VFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPE----ISFDKQKFLAK 230
Query: 309 ITDIICKRSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGVWKKKLKSQ 368
+ + + V++SEG+ + + G D G +L
Sbjct: 231 V-----DSCVKKFGYCSVVVSEGVKG---------DDGKFLSDQGVRDAFG--HAQLGGV 274
Query: 369 SQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTG 428
+ + +++ L ++ +
Sbjct: 275 APVV----ASMVKEGL-------------GLKY-HWGV---------------------- 294
Query: 429 QPHFFGYEGRCG--FPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGG 486
Y R + D YA+G A+ G ++ ++ + +W VG
Sbjct: 295 ----ADYLQRAARHIASKTDVEQAYAMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGM 350
Query: 487 TALTSLMHVERR 498
L+ + +VE+
Sbjct: 351 AQLSQVANVEKM 362
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 128 bits (325), Expect = 2e-33
Identities = 72/264 (27%), Positives = 110/264 (41%), Gaps = 40/264 (15%)
Query: 92 KIGVVLSGGQAPGGHNVI-----AGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSE 146
+IGV+ SGG +PG + + I+ ++YG G AG++ K +L
Sbjct: 3 RIGVLTSGGDSPGMNAAVRAVVRKAIY-------HDVEVYGIYNGYAGLISGKIEKLELG 55
Query: 147 FIYPYRNQGGFDMLCSGRDK-IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAE 205
+ ++GG L + R +T E ++ +KKL ++GLVVIGGD S A L E
Sbjct: 56 SVGDIIHRGG-TKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTE 114
Query: 206 NFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYH- 264
+G P TID D+ D + GFDTA T + I + A S H
Sbjct: 115 ------HGFPCVGVPGTIDNDIPGTDF--TIGFDTALNTVIDAIDKIRDTATS-----HE 161
Query: 265 ---FIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGY 321
I +MGR A I L L +I E + I + + E G
Sbjct: 162 RTYVIEVMGRHAGDIALWAGLAGGAESILIPEA----DYDM----HEIIARLKRGHERGK 213
Query: 322 NFGVVLISEGLIDFIPEVQQLIAE 345
+++++EG+ E + I E
Sbjct: 214 KHSIIIVAEGVGS-GVEFGKRIEE 236
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 127 bits (322), Expect = 5e-33
Identities = 74/289 (25%), Positives = 117/289 (40%), Gaps = 53/289 (18%)
Query: 92 KIGVVLSGGQAPGGHNVI-----AGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSE 146
+IG++ SGG APG + + I G +++G R G AG++ L SE
Sbjct: 3 RIGILTSGGDAPGMNAAVRAVTRVAIA-------NGLEVFGIRYGFAGLVAGDIFPLESE 55
Query: 147 FIYPYRNQGGFDMLCSGRDK-IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAE 205
+ N G L S R E E +KK +D +VVIGGD S A L
Sbjct: 56 DVAHLINVSG-TFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTR 114
Query: 206 NFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYH- 264
IG P TID D+ D + G+DTAC T + I + A S H
Sbjct: 115 ------HGFNSIGLPGTIDNDIPYTDA--TIGYDTACMTAMDAIDKIRDTASS-----HH 161
Query: 265 ---FIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGY 321
+ +MGR I + + + +I E + + I + + + E+G
Sbjct: 162 RVFIVNVMGRNCGDIAMRVGVACGADAIVIPER----PYDV----EEIANRLKQAQESGK 213
Query: 322 NFGVVLISEGLIDFIPEVQQLIAELNE------ILAH---GGV----DR 357
+ G+V+++EG++ + + + + +L H GG DR
Sbjct: 214 DHGLVVVAEGVMT-ADQFMAELKKYGDFDVRANVLGHMQRGGTPTVSDR 261
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 120 bits (303), Expect = 8e-29
Identities = 65/332 (19%), Positives = 122/332 (36%), Gaps = 28/332 (8%)
Query: 31 VSLPLPSVLKNTFNVVDDAASSAAGDPEEIKKLFPKFYGQPSARLVECDPMACTLMENKS 90
V LPL ++ T +V + +E KL + + + ++ S
Sbjct: 344 VRLPLMECVQVTKDV---TKAMDEKRFDEAMKLRGRSFMNNWEVYKLLAHIRPPAPKSGS 400
Query: 91 LKIGVVLSGGQAPGGHNVI-----AGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSS 145
+ V+ G A G + + G+ +G+++ G G K + E
Sbjct: 401 YTVAVMNVGAPAAGMNAAVRSTVRIGLI-------QGNRVLVVHDGFEGPAKGQIEEAGW 453
Query: 146 EFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAE 205
++ + QGG L S R + F+Q + K ++ GLV+IGG ++ T L E
Sbjct: 454 SYVGGWTGQGG-SKLGSKRTL--PKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELME 510
Query: 206 NF-RSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYH 264
+ ++ + P T+ ++ D S G DTA T + A + +
Sbjct: 511 GRKQFDELCIPFVVIPATVSNNVPGSD--FSVGADTALNTICTTCDRIKQSAAGTKRRVF 568
Query: 265 FIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFG 324
I MG ++ L + A I EE T++++ + ++ ++ + G
Sbjct: 569 IIETMGGYCGYLATMAGLAAGADAAYIFEE----PFTIRDLQANVEHLV-QKMKTTVKRG 623
Query: 325 VVLISEGLIDFIPEVQQLIAELNEILAHGGVD 356
+VL +E + I L G D
Sbjct: 624 LVLRNEKCNENYTT--DFIFNLYSEEGKGIFD 653
Score = 110 bits (276), Expect = 2e-25
Identities = 62/302 (20%), Positives = 112/302 (37%), Gaps = 53/302 (17%)
Query: 86 MENKSLKIGVVLSGGQAPGGHNVI-----AGIFDYLQERTKGSKLYGFRGGPAGIMKC-- 138
I V+ SGG A G + + GIF G++++ G G++
Sbjct: 11 TLGVGKAIAVLTSGGDAQGMNAAVRAVVRVGIF-------TGARVFFVHEGYQGLVDGGD 63
Query: 139 KFVELSSEFIYPYRNQGGFDMLCSGRDK-IETPEQFKQAEETVKKLDLDGLVVIGGDDSN 197
E + E + GG ++ S R K E +A + K + L VIGGD S
Sbjct: 64 HIREATWESVSMMLQLGG-TVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSL 122
Query: 198 TNACLLAENF-----------------RSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240
T A + ++ ++G +ID D D+ + G D+
Sbjct: 123 TGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDM--TIGTDS 180
Query: 241 ACKTFSEVIGNVMTDARSSGKYYH----FIRLMGRAASHITLECALQTHPNIAIIGEEIA 296
A +E++ + T A+S H + +MGR ++ L +L + I E
Sbjct: 181 ALHRITEIVDAITTTAQS-----HQRTFVLEVMGRHCGYLALVTSLSCGADWVFIPECPP 235
Query: 297 AKKLTLKNVTDYITDIICKRSEAGYNFGVVLISEGLIDFI--PEVQQLIAELNEILAHGG 354
N D++ + + G +++++EG ID P + + + ++ G
Sbjct: 236 D-----DNWEDHLCRRLSETRTRGSRLNIIIVAEGAIDRNGKPITSEGVKD--LVVRRLG 288
Query: 355 VD 356
D
Sbjct: 289 YD 290
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 119 bits (299), Expect = 3e-28
Identities = 72/336 (21%), Positives = 127/336 (37%), Gaps = 52/336 (15%)
Query: 52 SAAGDPEEIKKLFPKFYGQPSARLVECDPMACTLMENKSLK-IGVVLSGGQAPGGHNVI- 109
S+ K P F+ P + + + + + K I ++ SGG APG + +
Sbjct: 171 SSYPSLNSKKITSPDFFLHPKKEVRSEESIVEQVKSEEGKKKIAIITSGGDAPGMNAAVR 230
Query: 110 ----AGIFDYLQERTKGSKLYGFRGGPAGIMKC--KFVELSSEFIYPYRNQGGFDMLCSG 163
AGIF G K+Y G G++K EL + + + GG ++ +
Sbjct: 231 AVTRAGIF-------YGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGG-TIIGTA 282
Query: 164 RDK-IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRS------------- 209
R K QA + +D LVV GGD S T A L + +
Sbjct: 283 RCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITK 342
Query: 210 ----KDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYH- 264
++G +ID D+ D + G ++ + E++ + A S H
Sbjct: 343 EQYETHRNLTIVGLVGSIDNDMCGTDS--TIGAYSSLERIIELVDYIDATAAS-----HS 395
Query: 265 ---FIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGY 321
+ +MGR + L + T + I E + + N D + + + E G
Sbjct: 396 RAFVVEVMGRHCGWLGLMSGIATGADYIFIPE----RPPSESNWKDDLKKVCLRHREKGR 451
Query: 322 NFGVVLISEGLIDFIPEVQQLIAEL-NEILAHGGVD 356
V+++EG ID ++ + +E ++L G+D
Sbjct: 452 RKTTVIVAEGAID--DQLNPITSEEVKDVLVEIGLD 485
Score = 118 bits (296), Expect = 7e-28
Identities = 58/339 (17%), Positives = 115/339 (33%), Gaps = 34/339 (10%)
Query: 31 VSLPLPSVLKNTFNVVDDAASSAAGDPEEIKKLFPKFYGQPSA---RLVECDPMACTLME 87
V PL + T V +A+ A D ++ +L + + + + D + + E
Sbjct: 539 VRQPLVESVAQTKTV---SAAIEAKDFDKALQLRDQEFATSYENFLSVSKYDDGSYLVPE 595
Query: 88 NKSLKIGVVLSGGQAPGGHNVI-----AGIFDYLQERTKGSKLYGFRGGPAGIMKC-KFV 141
+ L I ++ G + + KG +++ R G AG+++
Sbjct: 596 SSRLNIAIIHVGAPTSALNPATRVATLNSLA-------KGHRVFAIRNGFAGLIRHGAVR 648
Query: 142 ELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNAC 201
EL+ + + N GG + + R + ++ DGL++IGG ++ T
Sbjct: 649 ELNWIDVEDWHNTGG-SEIGTNRSL--PSDDMGTVAYYFQQYKFDGLIIIGGFEAFTALY 705
Query: 202 LLAENFRS-KDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSG 260
L + P T+ ++ + S G DT T S V A +S
Sbjct: 706 ELDAARAQYPIFNIPMCCLPATVSNNVPGTEY--SLGSDTCLNTLSGYCDAVKQSASASR 763
Query: 261 KYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEA- 319
+ + + G + ++ L T E + L+ V + I + E
Sbjct: 764 RRTFVVEVQGGYSGYLASYAGLITGALAVYTPEN----PINLQTVQEDIELLTRTYEEDD 819
Query: 320 --GYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVD 356
+ + + +E LIA + G +
Sbjct: 820 GKNRSGKIFIHNEKASKVYTT--DLIAAIIGEAGKGRFE 856
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 117 bits (295), Expect = 8e-28
Identities = 58/339 (17%), Positives = 117/339 (34%), Gaps = 34/339 (10%)
Query: 31 VSLPLPSVLKNTFNVVDDAASSAAGDPEEIKKLFPKFYGQPSA---RLVECDPMACTLME 87
+ +PL +K T +V A + D ++ L + + D + L
Sbjct: 334 IRMPLVESVKLTKSV---ATAIENKDFDKAISLRDTEFIELYENFLSTTVKDDGSELLPV 390
Query: 88 NKSLKIGVVLSGGQAPGGHNVI-----AGIFDYLQERTKGSKLYGFRGGPAGIMK-CKFV 141
+ L IG+V G + + + G K Y G +G+++ +
Sbjct: 391 SDRLNIGIVHVGAPSAALNAATRAATLYCLS-------HGHKPYAIMNGFSGLIQTGEVK 443
Query: 142 ELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNAC 201
ELS + + N GG + + R E +K LDGL+++GG + +
Sbjct: 444 ELSWIDVENWHNLGG-SEIGTNRSV--ASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLK 500
Query: 202 LLAENF-RSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSG 260
L + + + P T+ ++ + S G DT ++ A ++
Sbjct: 501 QLRDGRTQHPIFNIPMCLIPATVSNNVPGTEY--SLGVDTCLNALVNYTDDIKQSASATR 558
Query: 261 KYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEA- 319
+ + G + +I L T E+ K+ L ++ + IT +
Sbjct: 559 RRVFVCEVQGGHSGYIASFTGLITGAVSVYTPEK----KIDLASIREDITLLKENFRHDK 614
Query: 320 --GYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVD 356
N +++ +E QL+A++ + G
Sbjct: 615 GENRNGKLLVRNEQASSVYST--QLLADIISEASKGKFG 651
Score = 113 bits (286), Expect = 1e-26
Identities = 59/296 (19%), Positives = 113/296 (38%), Gaps = 53/296 (17%)
Query: 92 KIGVVLSGGQAPGGHNVI-----AGIFDYLQERTKGSKLYGFRGGPAGIMK--CKFVELS 144
KI V+ SGG +PG + + GI G ++ G G+++ +++
Sbjct: 7 KIAVMTSGGDSPGMNAAVRAVVRTGIH-------FGCDVFAVYEGYEGLLRGGKYLKKMA 59
Query: 145 SEFIYPYRNQGGFDMLCSGRDK-IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLL 203
E + + ++GG ++ + R E +QA + +D LVV GGD S T A L
Sbjct: 60 WEDVRGWLSEGG-TLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLF 118
Query: 204 AENFRSKDMKTR-----------------VIGCPKTIDGDLKCKDVPISFGFDTACKTFS 246
+ S + ++G +ID D+ D + G +A +
Sbjct: 119 RHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDS--TIGAYSALERIC 176
Query: 247 EVIGNVMTDARSSGKYYH----FIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTL 302
E++ + A+S H + +MGR + L + T + I E + +
Sbjct: 177 EMVDYIDATAKS-----HSRAFVVEVMGRHCGWLALMAGIATGADYIFIPE----RAVPH 227
Query: 303 KNVTDYITDIICKRSEAGYNFGVVLISEGLID--FIPEVQQLIAELNEILAHGGVD 356
D + ++ + G ++++EG +D P + + L G+D
Sbjct: 228 GKWQDELKEVCQRHRSKGRRNNTIIVAEGALDDQLNPVTANDVK---DALIELGLD 280
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 114 bits (288), Expect = 6e-27
Identities = 62/339 (18%), Positives = 126/339 (37%), Gaps = 33/339 (9%)
Query: 31 VSLPLPSVLKNTFNVVDDAASSAAGDPEEIKKLFPKFYGQPSA---RLVECDPMACTLME 87
V PL +K T V +A A D + L + + + D L +
Sbjct: 334 VRKPLMESVKLT-KAVAEAI--QAKDFKRAMSLRDTEFIEHLNNFMAINSADHNEPKLPK 390
Query: 88 NKSLKIGVVLSGGQAPGGHNVI-----AGIFDYLQERTKGSKLYGFRGGPAGIMKCKFV- 141
+K LKI +V G A G ++ + + +G + Y G +G+ + + V
Sbjct: 391 DKRLKIAIVNVGAPAGGINSAVYSMATYCMS-------QGHRPYAIYNGWSGLARHESVR 443
Query: 142 ELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNAC 201
L+ + + ++++GG + + R +K + DGL+++GG ++ +
Sbjct: 444 SLNWKDMLGWQSRGG-SEIGTNRVT-PEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLH 501
Query: 202 LLAENF-RSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSG 260
L + ++ P T+ ++ + S G DTA E V A S+
Sbjct: 502 QLERARESYPAFRIPMVLIPATLSNNVPGTE--YSLGSDTALNALMEYCDVVKQSASSTR 559
Query: 261 KYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDI---ICKRS 317
+ G + ++ +L ++ + EE ++L+ +++ I + K
Sbjct: 560 GRAFVVDCQGGNSGYLATYASLAVGAQVSYVPEE----GISLEQLSEDIEYLAQSFEKAE 615
Query: 318 EAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVD 356
G ++L S + +AE+ A G D
Sbjct: 616 GRGRFGKLILKSTNASKALSA--TKLAEVITAEADGRFD 652
Score = 110 bits (278), Expect = 1e-25
Identities = 64/297 (21%), Positives = 109/297 (36%), Gaps = 53/297 (17%)
Query: 92 KIGVVLSGGQAPGGHNVI-----AGIFDYLQERTKGSKLYGFRGGPAGIMKC---KFVEL 143
I V+ SGG APG ++ + + IF KG + + G G+++ E
Sbjct: 5 AIAVMTSGGDAPGMNSNVRAIVRSAIF-------KGCRAFVVMEGYEGLVRGGPEYIKEF 57
Query: 144 SSEFIYPYRNQGGFDMLCSGRDK-IETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACL 202
E + + +GG + + R + E + + + +D L+V GGD S T A L
Sbjct: 58 HWEDVRGWSAEGG-TNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADL 116
Query: 203 LAENFRSKDMKTR-----------------VIGCPKTIDGDLKCKDVPISFGFDTACKTF 245
+ S + + G +ID D+ D + G +A
Sbjct: 117 FRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDA--TIGAYSALDRI 174
Query: 246 SEVIGNVMTDARSSGKYYH----FIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLT 301
+ I V A S H + +MGR + L + T + I E K T
Sbjct: 175 CKAIDYVEATANS-----HSRAFVVEVMGRNCGWLALLAGIATSADYIFIPE----KPAT 225
Query: 302 LKNVTDYITDIICKRSEAGYNFGVVLISEGLID--FIPEVQQLIAELNEILAHGGVD 356
D + DI+ K G +V+++EG I P + + ++ G+D
Sbjct: 226 SSEWQDQMCDIVSKHRSRGKRTTIVVVAEGAIAADLTPISPSDVHK--VLVDRLGLD 280
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 113 bits (284), Expect = 3e-26
Identities = 61/281 (21%), Positives = 105/281 (37%), Gaps = 49/281 (17%)
Query: 84 TLMENKSLKIGVVLSGGQAPGGHNVI-----AGIFDYLQERTKGSKLYGFRGGPAGIMK- 137
L+ IGV+ SGG +PG + + AGI+ KG K++ G G+++
Sbjct: 175 KLLNPVRKTIGVMTSGGDSPGMNPFVRAVVRAGIY-------KGCKVFCIHEGYEGLVRG 227
Query: 138 --CKFVELSSEFIYPYRNQGGFDMLCSGRDK-IETPEQFKQAEETVKKLDLDGLVVIGGD 194
E + + +GG + + R K +A + + + +D L+V GGD
Sbjct: 228 GEKYIKETQWHDVRGWLVEGG-TNIGTARCKEFRERSGRLKACKNMIDMGIDALIVCGGD 286
Query: 195 DSNTNACLLAENFRSKDMKTR-----------------VIGCPKTIDGDLKCKDVPISFG 237
S T A + S + + G +ID D+ D + G
Sbjct: 287 GSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDA--TIG 344
Query: 238 FDTACKTFSEVIGNVMTDARSSGKYYH----FIRLMGRAASHITLECALQTHPNIAIIGE 293
++ I + A S H + +MGR + L L T + +I E
Sbjct: 345 AFSSLDRICRAIDYIDATANS-----HSRAFIVEVMGRHCGWLGLLAGLATSADYILIPE 399
Query: 294 EIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISEGLID 334
K + + D + DI+ K G +V+++EG I
Sbjct: 400 ----KPASSREWQDQMCDIVGKHRARGKRKTIVIVAEGAIS 436
Score = 112 bits (282), Expect = 5e-26
Identities = 54/336 (16%), Positives = 122/336 (36%), Gaps = 27/336 (8%)
Query: 31 VSLPLPSVLKNTFNVVDDAASSAAGDPEEIKKLFPKFYGQPSARLVEC---DPMACTLME 87
+PL ++ T V A S + + ++ L + + + D + +L
Sbjct: 512 TRVPLVDAVELTQQV---AKSIESRNFKKAISLRDSEFVEHMKNFISTNSADHVPPSLPL 568
Query: 88 NKSLKIGVVLSGGQAPGGHNVI-----AGIFDYLQERTKGSKLYGFRGGPAGIMKCKFV- 141
K KI ++ G A G ++ + + +G Y G +G+ + + V
Sbjct: 569 EKRKKIAIINVGAPAGGMNSAVYSMATYCMS-------RGHVPYAIHNGFSGLARHESVR 621
Query: 142 ELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNAC 201
++ I + + GG + + R +K DGL+++GG ++ +
Sbjct: 622 SINWLDIEGWGSLGG-SEIGTNRTL-PNDADIGMIAYFFEKYGFDGLILVGGFEAFISLH 679
Query: 202 LLAEN-FRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSG 260
L ++ ++ P TI ++ + S G DT +F E + A ++
Sbjct: 680 QLERARINYPSLRIPLVLIPATISNNVPGTE--YSLGSDTCLNSFMEYCDVIKQSAAATR 737
Query: 261 KYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAG 320
+ + G + +I L I+ + EE + ++ + + +
Sbjct: 738 NRVFVVEVQGGNSGYIATHAQLACGAQISYVPEEGISLAQLEMDI-NSLKESFANDQGKT 796
Query: 321 YNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVD 356
+ ++L SE + ++I+ + + A G D
Sbjct: 797 KSGRLILKSENASKVLTT--EVISTIIDDEASGRFD 830
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.2 bits (176), Expect = 3e-13
Identities = 89/643 (13%), Positives = 170/643 (26%), Gaps = 213/643 (33%)
Query: 7 IVKRDEAAGRVASIYTELQISRMN-VSLPLPSVLKNTFNVVDDAASSAAGDPEEIKKL-- 63
I+ +A ++ L + V + VL+ + + + P + ++
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 64 ------------FPKFY---GQPSARLVECDPMACTLMENKSLKIGVVLSGGQAPG-GHN 107
F K+ QP +L + L+E + K V++ G G G
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQA------LLELRPAK-NVLIDGV--LGSGKT 164
Query: 108 VIAG--IFDYLQERTKGSKLY----GFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLC 161
+A Y + K++ P +++ +L + + ++ D
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE-MLQKLLYQIDPNWTSRS--DHSS 221
Query: 162 SGRDKIETPEQFKQAEETVKKLDL-----DGLVVIGGDDSNTNACLLAENFRSKDMKTRV 216
+ + +I + +++L + L+V+ +
Sbjct: 222 NIKLRIH------SIQAELRRLLKSKPYENCLLVL--LNVQN------------------ 255
Query: 217 IGCPKTIDGDLKCKDVPISFGFDTACKT-----FSEVIGNVMTDARSSGKYYH------- 264
K + F+ +CK F +V TD S+ H
Sbjct: 256 ---AKAWNA------------FNLSCKILLTTRFKQV-----TDFLSAATTTHISLDHHS 295
Query: 265 -----------FIRLMGRAASHITLECALQTHP-NIAIIGEEIAAKKLTLKNVTDYITDI 312
++ + + E L T+P ++II E I T N D
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 313 ICKRSEAGYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGV----------WK 362
+ E+ N VL E +++ L V W
Sbjct: 355 LTTIIESSLN---VLEPA-------EYRKMFDRL-------SVFPPSAHIPTILLSLIWF 397
Query: 363 KKLKSQSQELFELFPEEIQKQLLLERDP-------HGNVQVAKIETERMLIQMVEAELNK 415
+KS + ++ K L+E+ P K++ E E L++
Sbjct: 398 DVIKSDV----MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN------EYALHR 447
Query: 416 R------KQKGTYKGQFTGQP------HFFGY--------EGRCGFPTNF-DANYCYALG 454
K G+ E F F D
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD------FR 501
Query: 455 FASGALLHAGKTGLIASVGNLGEPVEEWTVGGTALTSLMHVERRHGKFKPVIKKAMVELE 514
F + H W G+ L +L ++ +KP I
Sbjct: 502 FLEQKIRHDSTA---------------WNASGSILNTLQQLK----FYKPYICDN----- 537
Query: 515 GKPFKTFASLREDWTIKNLYASPGPIQFSGPTANDINHTLMLE 557
P + L I + + + LM E
Sbjct: 538 -DP--KYERLVNA--ILDFLPKIEENLICSKYTDLLRIALMAE 575
Score = 48.3 bits (114), Expect = 6e-06
Identities = 55/356 (15%), Positives = 106/356 (29%), Gaps = 96/356 (26%)
Query: 57 PEEIKKLFPKFYGQPSARL----VECDPMACTLMENKSLKIGVVLSGGQAPGGHNVIAGI 112
P+E+K L K+ L + +P ++ I + G A
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-------IAESIRDGLA---------T 343
Query: 113 FDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQ 172
+D + KL +E S + P + FD L P
Sbjct: 344 WDNWK-HVNCDKLT------------TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 173 ----------FKQAEETVKKLDLDGLVVIGGDDSNT--NACLLAENFRSKDMKT---RVI 217
V KL LV +S + L + ++ ++
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 218 GC---PKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHF------IRL 268
PKT D D P + F IG+ + + + F R
Sbjct: 451 DHYNIPKTFDSDDLIP--PYLDQY------FYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 269 MGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLI 328
+ + H + I LK YI D K L+
Sbjct: 503 LEQKIRHDSTAWNASG---------SILNTLQQLKFYKPYICDNDPKYER--------LV 545
Query: 329 SEGLIDFIPEVQQ--LIAELNEILAHGGVDRDGVWKKKLKSQSQELFELFPEEIQK 382
+ ++DF+P++++ + ++ ++L + L ++ + +FE +++Q+
Sbjct: 546 NA-ILDFLPKIEENLICSKYTDLL-----------RIALMAEDEAIFEEAHKQVQR 589
Score = 47.2 bits (111), Expect = 2e-05
Identities = 41/241 (17%), Positives = 86/241 (35%), Gaps = 54/241 (22%)
Query: 226 DLKCKD-VPI---SFGFDTACKTFSEVIGNVMTDA----------RSSGKYYHFIRLMGR 271
+ KD + + +F + CK ++ ++++ SG F L+ +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 272 AASHIT--LECALQTHPNIAIIGEEIAAK-KLTLKNVTDYITDIICKRSEAGYNFGVVLI 328
+ +E L+ N + I + + YI +R YN +
Sbjct: 75 QEEMVQKFVEEVLR--INYKFLMSPIKTEQRQPSMMTRMYIE----QRDRL-YN-DNQVF 126
Query: 329 SEGLIDFIPEVQQLIAELNE------ILAHGGVDRDGVWKKKL--------KSQSQELFE 374
++ + + +L L E +L G + G K + K Q + F+
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL---GSGKTWVALDVCLSYKVQCKMDFK 183
Query: 375 LF---------PE---EIQKQLLLERDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTY 422
+F PE E+ ++LL + DP+ + ++ I ++AEL + + Y
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 423 K 423
+
Sbjct: 244 E 244
Score = 34.8 bits (79), Expect = 0.088
Identities = 46/311 (14%), Positives = 82/311 (26%), Gaps = 123/311 (39%)
Query: 35 LPSVLKNTFNVVDDAASSAAGDPEEIKKL------FPKFYGQPSARLV--------ECDP 80
L ++++++ NV++ P E +K+ FP P+ L
Sbjct: 355 LTTIIESSLNVLE---------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 81 MACTLMENKSLKIGVVLSGGQAPGGHNVIAGIFD-YLQERTKGSKLYGFRGGPAGIMKCK 139
+ + SL + I YL+ + K Y
Sbjct: 406 VVVNKLHKYSL-----VEKQPKESTI----SIPSIYLELKVKLENEY------------- 443
Query: 140 FVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQ----------FKQAEETVKKLDLDGLV 189
L + Y FD D I K E +++ L +V
Sbjct: 444 --ALHRSIVDHYNIPKTFD----SDDLIPPYLDQYFYSHIGHHLKNIEHP-ERMTLFRMV 496
Query: 190 VIGGDDSNTNACLLAENFRSKDMKTRVIGCPKTIDG-------DLK------CKDVPISF 236
L +FR + K R G LK C + P
Sbjct: 497 ------------FL--DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP--- 539
Query: 237 GFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGRAASHIT-------LECALQTHPNIA 289
+ ++ ++ F+ + ++ L AL + A
Sbjct: 540 -------KYERLVNAIL----------DFLP---KIEENLICSKYTDLLRIALM-AEDEA 578
Query: 290 IIGEEIAAKKL 300
I E A K++
Sbjct: 579 IFEE--AHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 4e-05
Identities = 100/633 (15%), Positives = 181/633 (28%), Gaps = 229/633 (36%)
Query: 24 LQIS--RMNVSLPLP-------SVLKNTFN-VVDDAASSAAGD--PEEIKKLFPKFYGQP 71
L +S + L +P S L+ FN ++ + A D P +L KF G
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY- 67
Query: 72 SARLVECDPMACTLMENKSLKIGV------VLSGGQAPGGHNVIAGIFDYLQERTKGSKL 125
+ LVE + ++ L + + L G H + A + LQE
Sbjct: 68 VSSLVEPSKVGQF---DQVLNLCLTEFENCYLEGNDI---HALAAKL---LQEN------ 112
Query: 126 YGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQ---FKQAEETVKK 182
++K K + I Y + + F+ E +
Sbjct: 113 ------DTTLVKTKEL------IKNY-----ITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 183 LDLDGLVVIGGDDSNTNACL--LAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDT 240
L + + GG NT+ L + +++ + GDL
Sbjct: 156 L----VAIFGG-QGNTDDYFEELRDLYQT----------YHVLVGDL----------IKF 190
Query: 241 ACKTFSEVIGNVMTDARSSGKYYHFIRLM---GRAASHITLECALQTHPNIAIIGEEIAA 297
+ +T SE+I + + + + + + L + P +IG
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP---LIG----- 242
Query: 298 KKLT-LKNVTDYITDIICKRSEAGYNF--------GVVLISEGLI------------DFI 336
+ L + Y+ + K G+ G S+GL+ F
Sbjct: 243 --VIQLAH---YV--VTAKLL--GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 337 PEVQQLIAELNEILAHGGVDRDGVWKKKLKSQSQELF-----------------ELFP-- 377
V++ I +L GV + E + E P
Sbjct: 294 VSVRKAI----TVLFFIGV------------RCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 378 ---------EEIQKQLL-----LERDPHGNVQVAKIETERMLI------QMVEAELNKRK 417
E++Q + L V+++ + + L+ + L RK
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQ--VEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 418 QK-GTYKGQ----FTGQPHFFGYEGRCGF-PTN--FDANYCYALGFASGALLH-AGKTGL 468
K + Q F+ + F F P F ++ L AS + K +
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNR----FLPVASPFHSHL---LVPASDLINKDLVKNNV 448
Query: 469 IASVGNLGEPVEEWTVGGTALTSLMHVERRHGKFKPVIKKAMVELEGKPFKTFASLREDW 528
+ ++ PV + T G+ L L I + +V+ L W
Sbjct: 449 SFNAKDIQIPVYD-TFDGSDLRVL----------SGSISERIVDC-------IIRLPVKW 490
Query: 529 TIKNLYASPGPIQFSGPTANDINHTLMLELGQG 561
T T +L+ G G
Sbjct: 491 ----------------ETTTQFKATHILDFGPG 507
Score = 32.7 bits (74), Expect = 0.46
Identities = 43/284 (15%), Positives = 82/284 (28%), Gaps = 97/284 (34%)
Query: 3 NKSSIVKR--DEAAGRVASIY--TELQISRMNVSLPLPSVL-----------------KN 41
S + + A Y + L I N P L
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINN-----PVNLTIHFGGEKGKRIRENYSAM 1691
Query: 42 TFNVVDDAASSAAGDPEEIKKLFPK--FYG-----------QPSARLVECDPMACT-LME 87
F + D +EI + F QP+ L+E A ++
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME---KAAFEDLK 1748
Query: 88 NKSLKIGVVLSGGQAPGGHNV--------IAGIFDYLQERTKGSKLYGFRGGPAGIMKCK 139
+K G++ GH++ +A + ++ ++ +RG
Sbjct: 1749 SK----GLI-PADATFAGHSLGEYAALASLADVMS-IES---LVEVVFYRG--------M 1791
Query: 140 FVELSSEFIYPYRNQGG---FDMLCSGRDKIE---TPEQFKQAEETVKKLDLDGLV---- 189
++++ R++ G + M+ ++ + E + E V K LV
Sbjct: 1792 TMQVAVP-----RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK-RTGWLVEIVN 1845
Query: 190 --------VIGGDDSNTNACLLAE--NFRSKDMKTRVIGCPKTI 223
V GD + + NF K K +I K++
Sbjct: 1846 YNVENQQYVAAGDLRALDT--VTNVLNF-IKLQKIDIIELQKSL 1886
Score = 31.9 bits (72), Expect = 0.77
Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 35/141 (24%)
Query: 230 KDVPISFGFDTACKTFSEVIG----NVMTDARSSGKYYHFIRLMGRAASHITLECALQTH 285
+DV ++ A F + G +++ + + HF G+ +T
Sbjct: 1643 QDV-----WNRADNHFKDTYGFSILDIVINNPVN-LTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 286 PNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISEGLIDFIPEVQQ--L- 342
+ + E+I K + ++ T F +GL+ + Q L
Sbjct: 1697 VDGKLKTEKI------FKEINEHSTSYT---------FR---SEKGLLS-ATQFTQPALT 1737
Query: 343 ---IAELNEILAHGGVDRDGV 360
A ++ + G + D
Sbjct: 1738 LMEKAAFEDLKSKGLIPADAT 1758
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 35.0 bits (80), Expect = 0.035
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 13/59 (22%)
Query: 205 ENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFD-----TACKTFSEVIGNVMTDARS 258
R ++ + CP+ CK P C V+ + + D RS
Sbjct: 11 AGRRGPNLNIVLT-CPE-------CKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRS 61
Score = 34.3 bits (78), Expect = 0.053
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 8/35 (22%)
Query: 305 VTDYIT-DIICKRSEAGYNFGVVLISEGLIDFIPE 338
V + D++C G+V +S+ L+D E
Sbjct: 35 VERFSEGDVVCALC------GLV-LSDKLVDTRSE 62
>1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor,
enalaprilat, zinc dependant peptidase, anti-hypertensive
drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB:
1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2ydm_A* 2iux_A* 2iul_A*
2xy9_A* 3bkk_A* 3bkl_A* 3l3n_A*
Length = 589
Score = 34.8 bits (79), Expect = 0.076
Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 26/149 (17%)
Query: 145 SEFIYPYRNQGGFDMLCSGRDKIETPEQ-FKQAEETVKKLDLDGL--------VVIGGDD 195
+ + P+ + D + + TP + FK+A++ L L + ++ D
Sbjct: 251 YDLVVPFPSAPSMDTTEAMLKQGWTPRRMFKEADDFFTSLGLLPVPPEFWNKSMLEKPTD 310
Query: 196 SNTNACL-LAENFRSKDMKTRVIGCPKTIDGDLK--------------CKDVPISFGFDT 240
C A +F + R+ C DL KD+P++ +
Sbjct: 311 GREVVCHASAWDFYNGK-DFRIKQCTTVNLEDLVVAHHEMGHIQYFMQYKDLPVAL-REG 368
Query: 241 ACKTFSEVIGNVMTDARSSGKYYHFIRLM 269
A F E IG+V+ + S+ K+ H + L+
Sbjct: 369 ANPGFHEAIGDVLALSVSTPKHLHSLNLL 397
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI,
infectious disease, LYME DI non-hodgkin lymphomas,
neuroborreliosis; 2.20A {Borrelia burgdorferi}
Length = 289
Score = 33.6 bits (77), Expect = 0.15
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 281 ALQTHPNIAIIGEEIAAKKLTLKNVTDYITDII 313
ALQ H N I+ ++ A +L + V +Y DI
Sbjct: 249 ALQLHKNAIIVSDKNATYELKVGTV-EYFNDIE 280
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme,
conformational disorder, conformational differences,
hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP:
c.124.1.1
Length = 289
Score = 32.8 bits (75), Expect = 0.26
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 281 ALQTHPNIAIIGEEIAAKKLTLKNVTDYITDII 313
A Q HP + +E A +L +K V Y ++
Sbjct: 228 AFQQHPRTVFVCDEDATLELKVKTV-KYFKGLM 259
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic
effects, aldose-ketose isomerase multiple conformers,
isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP:
c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A
1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Length = 266
Score = 32.0 bits (73), Expect = 0.48
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 281 ALQTHPNIAIIGEEIAAKKLTLKNVTDYITDI 312
LQ HP ++ +E + +L +K + Y ++
Sbjct: 228 CLQLHPKAIMVCDEPSTMELKVKTL-RYFNEL 258
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Length = 413
Score = 32.1 bits (72), Expect = 0.58
Identities = 8/67 (11%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 57 PEEIKKLFPKFYGQPS-ARLVECDPMACTLMENKSLKIGVVL---SGGQAPGGHNVIAGI 112
E +K ++ + E P K ++ +++ + GG + +
Sbjct: 12 NEYVKNVYKNTVSNFIETSIPEITPFNARTSSIKGKRLNLLVPSINQEHMFGGISTALKL 71
Query: 113 FDYLQER 119
F+ +
Sbjct: 72 FEQFDNK 78
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.2
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 11/39 (28%)
Query: 56 DPEEIKKLFP--KFYGQPSARLVECDPMACTLMENKSLK 92
+ + +KKL K Y SA P A + +++
Sbjct: 18 EKQALKKLQASLKLYADDSA------P-ALAI--KATME 47
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1210
Score = 28.7 bits (64), Expect = 7.7
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 11/93 (11%)
Query: 103 PGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCS 162
P G N I I Y + S + G+ + F ++
Sbjct: 807 PAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTV------- 859
Query: 163 GRDKIETPEQFKQA---EETVKKLDLDGLVVIG 192
++ E P + T KL+ DGL+ G
Sbjct: 860 -MEEFERPVRSTTLRMKHGTYDKLEDDGLIAPG 891
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B
2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Length = 1131
Score = 28.3 bits (63), Expect = 8.2
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 11/93 (11%)
Query: 103 PGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPYRNQGGFDMLCS 162
P G+N I + + + S + G+ + F L S Y
Sbjct: 720 PAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQ------- 772
Query: 163 GRDKIETPEQFKQ---AEETVKKLDLDGLVVIG 192
DKI PE + +E + L+ +G+V
Sbjct: 773 -EDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPE 804
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.400
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,872,391
Number of extensions: 569108
Number of successful extensions: 1357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1285
Number of HSP's successfully gapped: 42
Length of query: 570
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 471
Effective length of database: 3,937,614
Effective search space: 1854616194
Effective search space used: 1854616194
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)