RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 008310
(570 letters)
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 537 bits (1384), Expect = 0.0
Identities = 253/552 (45%), Positives = 360/552 (65%), Gaps = 19/552 (3%)
Query: 23 ELQISRMNVSLPLPSVLKNTFN---VVDDAASSAAGDPEEIKKLFPKFYGQPSARLVECD 79
+ R LP++LK FN +V + A D + +K+ F YG P E +
Sbjct: 2 LFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGE 61
Query: 80 PMACTLMENKSLKIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCK 139
+L +K+L IG++LSGG APGGHNVI+G+FD +++ SKL+GF+GGP G+++
Sbjct: 62 ---SSLSFSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLEND 118
Query: 140 FVELSSEFIYPYRNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTN 199
+EL+ I YRN GGFD++ SGR KIET E + +A K+ +L+ +++IGGDDSNTN
Sbjct: 119 KIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTN 178
Query: 200 ACLLAENFRSKDMKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSS 259
A +LAE F+ +VIG PKTID DL+ + ISFGFD+A K +SE+IGN+ DA S+
Sbjct: 179 AAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMST 238
Query: 260 GKYYHFIRLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEA 319
KY+HF++LMGR+ASH+ LECAL+THPNI I+ EE+ AKK TL + D + +I KRS
Sbjct: 239 KKYWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLN 298
Query: 320 GYNFGVVLISEGLIDFIPEVQQLIAELNEILAHGGVDRDGV--------WKKKLKSQSQE 371
G NFGVV++ EGLI+FIPEV+ L+ EL +I + G+ + KL +
Sbjct: 299 GDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKG 358
Query: 372 LFELFPEEIQKQLL---LERDPHGNVQVAKIETERMLIQMVEAELNKRKQKGTYKGQFTG 428
++ P IQ +L+ LERDPHGN V+++ TE++ I+M+++ LN K++G YKG FT
Sbjct: 359 VYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTP 418
Query: 429 QPHFFGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGNLGEPVEEWTVGGTA 488
HFFGYEGR FP+NFD++YCY+LG+ + L+ G TG ++ + NL +W GG
Sbjct: 419 VDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVP 478
Query: 489 LTSLMHVERRHGKFKPVIKKAMVELEGKPFKTFASLREDWTIKNLYASPGPIQFSGPT-- 546
LT LM++E R+G+ KPVIKKA+V+LEG+PFK F R+ W + NLY PGP+Q+ G +
Sbjct: 479 LTMLMNMEERYGEKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEI 538
Query: 547 ANDINHTLMLEL 558
++I TL LEL
Sbjct: 539 VDEITETLKLEL 550
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 156 bits (394), Expect = 1e-43
Identities = 70/257 (27%), Positives = 107/257 (41%), Gaps = 19/257 (7%)
Query: 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPY 151
KIGV+ SGG APG + I G+ T+G ++ G G G+ + + V+L +
Sbjct: 4 KIGVLTSGGDAPGMNAAIRGVVRSA--LTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDM 61
Query: 152 RNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKD 211
N+GG + + + A E +KK +D LVVIGGD S A R +
Sbjct: 62 INRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAM------RLTE 115
Query: 212 MKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGR 271
M IG P TID D+K D + GF TA T E I + + SS + + +MGR
Sbjct: 116 MGFPCIGLPGTIDNDIKGTD--YTIGFFTALSTVVEAIDRLRDTS-SSHQRISVVEVMGR 172
Query: 272 AASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISEG 331
+TL A+ ++ E + + + + I G +V I+E
Sbjct: 173 YCGDLTLAAAIAGGCEFVVVPEV--------EFSREDLVNEIKAGIAKGKKHAIVAITEH 224
Query: 332 LIDFIPEVQQLIAELNE 348
+ D + E
Sbjct: 225 MCDVDELAHFIEKETGR 241
Score = 34.3 bits (78), Expect = 0.035
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 433 FGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGN 474
G+ R G P +D +G + LL AG G + N
Sbjct: 248 LGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQN 289
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 152 bits (385), Expect = 2e-42
Identities = 65/256 (25%), Positives = 108/256 (42%), Gaps = 19/256 (7%)
Query: 92 KIGVVLSGGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVELSSEFIYPY 151
+IGV+ SGG +PG + I + G ++YG G AG++ +L +
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKA--IYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 152 RNQGGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKD 211
++GG + + + +T E K+ E +KK + GLVVIGGD S A L +
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKL------TE 114
Query: 212 MKTRVIGCPKTIDGDLKCKDVPISFGFDTACKTFSEVIGNVMTDARSSGKYYHFIRLMGR 271
+G P TID D + GFDTA T + I + D +S + + I +MGR
Sbjct: 115 HGFPCVGVPGTIDND--IPGTDFTIGFDTALNTVIDAIDKIR-DTATSHERTYVIEVMGR 171
Query: 272 AASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISEG 331
A I L L +I E + + + + E G +++++EG
Sbjct: 172 HAGDIALWSGLAGGAETILIPEA--------DYDMNDVIARLKRGHERGKKHSIIIVAEG 223
Query: 332 LIDFIPEVQQLIAELN 347
+ + +Q+
Sbjct: 224 VGSGVDFGRQIQEATG 239
Score = 32.0 bits (72), Expect = 0.17
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 433 FGYEGRCGFPTNFDANYCYALGFASGALLHAGKTGLIASVGN 474
G+ R G PT FD LG + LL GK G + N
Sbjct: 247 LGHVQRGGSPTAFDRVLASRLGARAVELLLEGKGGRCVGIQN 288
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 238
Score = 30.9 bits (69), Expect = 0.37
Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 8/95 (8%)
Query: 155 GGFDMLCSGRDKIETPEQFKQAEETVKKLDLDGLVVIGGDDSNTNACLLAENFRSKDMKT 214
GGF G E+ A + + + + D + A +
Sbjct: 135 GGF-----GAIHWLAAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYVELAGLPAHAAA 189
Query: 215 RVIGCPKTIDG-DLKCKDVPISFGFDTACKTFSEV 248
++ G +G L+ F AC V
Sbjct: 190 QLAGI--DTEGFHLRIGQGLHWLPFPAACGNPGAV 222
>d1wnaa1 d.319.1.1 (A:1-127) Hypothetical protein TTHA1528 (TT1805)
{Thermus thermophilus [TaxId: 274]}
Length = 127
Score = 29.5 bits (66), Expect = 0.42
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 28/135 (20%)
Query: 267 RLMGRAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVV 326
R+ RAA ++LE AL+ G +++ K+ L ITD KR +A Y +
Sbjct: 3 RVGMRAAPRVSLE-ALKAALG----GLKLSEAKVYL------ITDWQDKRDQARY---AL 48
Query: 327 LISEGLIDFI---------PEVQQLIAELNEILAHGGVDRDGVWKKKLKSQS--QELFEL 375
L+ G D + P ++ ++EL +L G R + + + S L +L
Sbjct: 49 LLHTGKKDLLVPDAFGPAFPGGEEALSELVGLLLAQGARR---FYEAVVSPGEMTALLDL 105
Query: 376 FPEEIQKQLLLERDP 390
PEE+ K+++ +P
Sbjct: 106 PPEELLKRVMAIANP 120
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 363
Score = 29.8 bits (67), Expect = 0.79
Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 19/87 (21%)
Query: 313 ICKRSEAGYNFGVVLISEGLIDFIPEVQQL------IAELNEILAHGGVDRDGVWKKKLK 366
+ R + G I +IP+ L + E+ + + ++ W K+++
Sbjct: 281 MFNRID-----GKASTKLTPIGYIPKEDALNLKGLGHINMMELFS---ISKEF-WDKEVE 331
Query: 367 SQSQELFELF----PEEIQKQLLLERD 389
+ L + P EI++++L +
Sbjct: 332 DIEKYLVDQVNADLPCEIEREILALKQ 358
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Escherichia coli [TaxId: 562]}
Length = 266
Score = 29.7 bits (66), Expect = 0.83
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 280 CALQTHPNIAIIGEEIAAKKLTLKNVTDYITDI 312
LQ HP ++ +E + +L +K + Y ++
Sbjct: 227 SCLQLHPKAIMVCDEPSTMELKVKTL-RYFNEL 258
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Human (Homo sapiens) [TaxId: 9606]}
Length = 281
Score = 29.7 bits (66), Expect = 0.89
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 281 ALQTHPNIAIIGEEIAAKKLTLKNVTDYITDII 313
A Q HP + +E A +L +K V Y ++
Sbjct: 228 AFQQHPRTVFVCDEDATLELKVKTV-KYFKGLM 259
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 95
Score = 27.9 bits (62), Expect = 0.95
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 358 DGVWKKKLKSQSQELFELFPEEIQKQLLLERDPHGNVQVAKIETERMLI 406
D L+S + E FPE+++ +L+ +G + + +I +ML+
Sbjct: 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLV 63
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 28.7 bits (63), Expect = 1.9
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 371 ELF--ELFPEEIQKQLLLERDPHGNVQVAKIETERMLIQMVEAELNKRKQKG 420
+L+ +FP+ + + +D E ++ L Q E N ++
Sbjct: 13 DLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAA 64
>d1ka1a_ e.7.1.1 (A:) 3';5'-adenosine bisphosphatase, PAP
phosphatase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 354
Score = 28.5 bits (62), Expect = 2.5
Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 271 RAASHITLECALQTHPNIAIIGEEIAAKKLTLKNVTDYITDIICKRSEAGYNFGVVLISE 330
AA I + P+ ++GEE ++ L+ V+ + +I N+
Sbjct: 49 YAAQTIIINAIKSNFPDDKVVGEE-SSSGLSDAFVSGILNEIKANDEVYNKNYKKDDFLF 107
Query: 331 GLIDFIPEVQQLIAELNEILAHGGVDRDGVW 361
F + + + ++ + + G + W
Sbjct: 108 TNDQFPLKSLEDVRQIIDFGNYEGGRKGRFW 138
>d2gkea1 d.21.1.1 (A:1-130) Diaminopimelate epimerase {Haemophilus
influenzae [TaxId: 727]}
Length = 130
Score = 26.6 bits (58), Expect = 5.0
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 2/104 (1%)
Query: 39 LKNTFNVVDDAASSAAGDPEEIKKLFPKFYGQPSARLVECDPMACTLMENKSLKIGVVLS 98
L N F VVD + PE I++L + G +L+ + ++
Sbjct: 9 LGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNA--D 66
Query: 99 GGQAPGGHNVIAGIFDYLQERTKGSKLYGFRGGPAGIMKCKFVE 142
G + N ++ + +K G M +
Sbjct: 67 GSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKD 110
>d1a79a2 d.75.1.1 (A:9-82) Tetrameric tRNA splicing endonuclease,
N-terminal domain {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 74
Score = 25.1 bits (55), Expect = 7.6
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 56 DPEEIKKLFPKFYGQPSARLVECDPM-ACTLMENKSLKI 93
D I KL + YG + + A L+ L++
Sbjct: 15 DKNGISKLSARHYGNVEGNFLSLSLVEALYLINLGWLEV 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.400
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,144,443
Number of extensions: 104975
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 17
Length of query: 570
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 480
Effective length of database: 1,171,896
Effective search space: 562510080
Effective search space used: 562510080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)