BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008311
(570 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica
GN=Os01g0794400 PE=2 SV=1
Length = 394
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 376 HLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDV 435
L + +EV+++ D + FE +MPW V D + + +
Sbjct: 69 QLKEHGAGFEVIFVSC--------DENRPSFERFHRAMPWPAV---PFGDIGCKKRLSER 117
Query: 436 WHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRL 488
+ + P LVVL P G VV P+A+ ++ +G AFPFTS R L +E +
Sbjct: 118 FQVEGIPRLVVLAPNGEVVQPDAVELVHRYGDRAFPFTSARVAELEADEQRKF 170
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 376 HLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV-YHPTLIDRAVIRYVKD 434
+L + +E+++IP+ D + + S MPW + Y A+ RY
Sbjct: 229 NLKGKAEDFEIIYIPM--------DKEEDGYLRSCSDMPWLALPYDDGASSGALARY--- 277
Query: 435 VWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFT 473
+ + P LVV+ P G+ V+ +++ ++ AFPFT
Sbjct: 278 -FDVREIPTLVVVGPDGKTVTREGRNLVNLYFDMAFPFT 315
>sp|Q7XPE8|NRX3_ORYSJ Probable nucleoredoxin 3 OS=Oryza sativa subsp. japonica
GN=Os04g0608600 PE=2 SV=2
Length = 471
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 16/106 (15%)
Query: 382 SHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNK 441
+++V++I + D +++F+ S+MPW+ + + ++ + ++ K
Sbjct: 239 GNFQVIFISM--------DRNEEEFQASLSAMPWFAIPYSD----TTVQELSRIFTIKGI 286
Query: 442 PILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLR----EEALWKE 483
P L++L P G+V + ++ +G+ AFPFT R EE L KE
Sbjct: 287 PTLLILGPDGKVFKTDGRRIISKYGAMAFPFTESRAYELEEVLKKE 332
>sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2
SV=1
Length = 392
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 364 SILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL 423
S L +YNE T + +EV+ I D ++F ++MPW + +
Sbjct: 223 SQLVDVYNELA---TTDKGSFEVILIST--------DRDSREFNINMTNMPWLAIPYEDR 271
Query: 424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLR 476
+ + R +++ K P LV++ P+ + V+ NA M+ ++GS +FPFT R
Sbjct: 272 TRQDLCR----IFNVKLIPALVIIGPEEKTVTTNAREMVSLYGSRSFPFTESR 320
>sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica
GN=Os03g0405900 PE=2 SV=1
Length = 581
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 368 QIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRA 427
+ YNE L Q +EVV++ D Q F + MPW V D
Sbjct: 65 EAYNE----LVSQGKSFEVVFVS--------GDSDQDAFNAYFAKMPWLAV---PFSDSE 109
Query: 428 VIRYVKDVWHFKNKPILVVLDPQ-GRVVSPNALHMMWIWGSNAFPFTSLREEALWKEE 484
+ + + + P LV+LD + G + + + + ++ +G+ A+PFT+ R L ++E
Sbjct: 110 ALAKLNERYKVMGIPHLVILDAKSGEIYTEDGVELVHEYGTEAYPFTTERINELKEQE 167
Score = 41.2 bits (95), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Query: 330 LVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWI 389
V G +V + L K VLL S + L ++ NE + + + +E+V+I
Sbjct: 350 FVLGKDGAKVPVSELVGKTVLLYFS-AKWCPPCRAFLPKLVNEYN-KIKEKHNDFEIVFI 407
Query: 390 PIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDP 449
D Q ++ S MPW + P +R + + ++ P LV + P
Sbjct: 408 S--------SDREQSSYDEFFSGMPWLAL--PLGDERK--QQLSKIFKITGIPSLVAIGP 455
Query: 450 QGRVVSPNALHMMWIWGSNAFPFT 473
G+ V+ +A + G++AFPFT
Sbjct: 456 DGKTVTKDAKTPLVAHGADAFPFT 479
>sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica
GN=Os03g0405500 PE=2 SV=1
Length = 569
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 368 QIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRA 427
+ YNE L Q ++EVV++ D Q+ F+ + MPW V D
Sbjct: 58 EAYNE----LVSQGKNFEVVFVS--------GDKDQEAFDAYFAKMPWLAV---PFSDSE 102
Query: 428 VIRYVKDVWHFKNKPILVVLDP-QGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEE 484
+ + + P LV+L+ G V + + + ++ + G+ A+PFT+ R L ++E
Sbjct: 103 CRAKLNKRFKVRGIPHLVILNATSGEVYTEDGVELVTVHGTEAYPFTTERINELKEQE 160
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 29/178 (16%)
Query: 312 DNMKVLKALIYAKDDLQPL-----------VDGSTKRRVNIEVLRRKNVLLLISD--LDI 358
+ M++L AK +LQ L V G +V + L K VLL S
Sbjct: 314 EKMEILAEKAKAKAELQTLESLLVIGDLDFVLGKDGAKVPVSELVGKTVLLYFSAKWCGP 373
Query: 359 SQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV 418
+ L L YN+ + + + +E+++I D Q ++ S MPW +
Sbjct: 374 CRAFLPKLVDEYNK----IKEKHNDFEIIFIS--------SDRDQSSYDEFFSGMPWLAL 421
Query: 419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLR 476
P +R +++ + + P LV + GR V+ +A + G++AFPFT R
Sbjct: 422 --PLGDERK--QHLSKTFRVRGIPSLVAIGADGRTVARDAKTPLTAHGADAFPFTEER 475
>sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1
SV=1
Length = 578
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 400 DPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNAL 459
D Q+ F+ S MPW + ++ + K P+L L P G+ V+ A
Sbjct: 407 DRDQESFDEYYSQMPWLALPFGDPRKASLAKTFK----VGGIPMLAALGPTGQTVTKEAR 462
Query: 460 HMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPLVLDWIKEGKYIF 510
++ G++A+PFT EE RL+ + D + DW K+ K++
Sbjct: 463 DLVVAHGADAYPFT---EE--------RLKEIEAKYDEIAKDWPKKVKHVL 502
>sp|P97346|NXN_MOUSE Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1
Length = 435
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 366 LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLID 425
L ++ ES + +E++++ D +++ F+ S MPW V + D
Sbjct: 211 LTRVLVESYRKIKEAGQEFEIIFVSA--------DRSEESFKQYFSEMPWLAVPY---TD 259
Query: 426 RAVIRYVKDVWHFKNKPILVVLDPQGRVVS 455
A + ++ + P L+VLDPQG V++
Sbjct: 260 EARRSRLNRLYGIQGIPTLIVLDPQGEVIT 289
>sp|A6QLU8|NXN_BOVIN Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1
Length = 435
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 366 LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLID 425
L ++ ES + +E++++ D ++ F+ S MPW V + D
Sbjct: 211 LTRVLVESYRKIKEAGQKFEIIFVSA--------DRSEDSFKQYFSEMPWLAVPY---TD 259
Query: 426 RAVIRYVKDVWHFKNKPILVVLDPQGRVVS 455
A + ++ + P L+VLDPQG V++
Sbjct: 260 EARRSRLNRLYGIQGIPTLIVLDPQGEVIT 289
>sp|Q6DKJ4|NXN_HUMAN Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2
Length = 435
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 366 LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLID 425
L ++ ES + ++E++++ D +++ F+ S MPW V + D
Sbjct: 211 LTRVLVESYRKIKEAGQNFEIIFVSA--------DRSEESFKQYFSEMPWLAVPY---TD 259
Query: 426 RAVIRYVKDVWHFKNKPILVVLDPQGRVVS 455
A + ++ + P L++LDPQG V++
Sbjct: 260 EARRSRLNRLYGIQGIPTLIMLDPQGEVIT 289
>sp|Q9UKX3|MYH13_HUMAN Myosin-13 OS=Homo sapiens GN=MYH13 PE=1 SV=2
Length = 1938
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 14/105 (13%)
Query: 270 HKLKNIHESLKKLMATCYRHIEEKKS-HEAYQMLVKLFDSIHIDNMKVLKAL-IYAK--- 324
+K+KN+ E + L + +EKKS EA+Q + D + ++ KV + I AK
Sbjct: 977 NKVKNLSEEMTALEENISKLTKEKKSLQEAHQ---QTLDDLQVEEDKVNGLIKINAKLEQ 1033
Query: 325 --DDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILE 367
DDL+ ++ K R ++E +RK L DL +SQE + LE
Sbjct: 1034 QTDDLEGSLEQEKKLRADLERAKRK----LEGDLKMSQESIMDLE 1074
>sp|P13541|MYH3_MOUSE Myosin-3 OS=Mus musculus GN=Myh3 PE=2 SV=2
Length = 1940
Score = 32.7 bits (73), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 270 HKLKNIHESLKKLMATCYRHIEEKKS-HEAYQMLVKLFDSIHIDNMKV-----LKALIYA 323
+K+KN+ E L L T + EKK+ EA+Q + D + + KV LK+ +
Sbjct: 974 NKVKNLTEELAGLDETIAKLTREKKALQEAHQ---QTLDDLQAEEDKVNSLSKLKSKLEQ 1030
Query: 324 K-DDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQES 382
+ DDL+ ++ K RV++E +RK L DL ++QE + LE + L +++
Sbjct: 1031 QVDDLESSLEQEKKLRVDLERNKRK----LEGDLKLAQESILDLENDKQQLDERLKKKDF 1086
Query: 383 HYEVVWIPIVDH 394
Y + + D
Sbjct: 1087 EYSQLQSKVEDE 1098
>sp|P12847|MYH3_RAT Myosin-3 OS=Rattus norvegicus GN=Myh3 PE=2 SV=1
Length = 1940
Score = 32.7 bits (73), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 270 HKLKNIHESLKKLMATCYRHIEEKKS-HEAYQMLVKLFDSIHIDNMKV-----LKALIYA 323
+K+KN+ E L L T + EKK+ EA+Q + D + + KV LK+ +
Sbjct: 974 NKVKNLTEELAGLDETIAKLTREKKALQEAHQ---QTLDDLQAEEDKVNSLSKLKSKLEQ 1030
Query: 324 K-DDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQES 382
+ DDL+ ++ K RV++E +RK L DL ++QE + LE + L +++
Sbjct: 1031 QVDDLESSLEQEKKLRVDLERNKRK----LEGDLKLAQESILDLENDKQQLDERLKKKDF 1086
Query: 383 HYEVVWIPIVDH 394
Y + + D
Sbjct: 1087 EYSQLQSKVEDE 1098
>sp|Q076A3|MYH13_CANFA Myosin-13 OS=Canis familiaris GN=MYH13 PE=3 SV=1
Length = 1940
Score = 32.3 bits (72), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 270 HKLKNIHESLKKLMATCYRHIEEKKS-HEAYQMLVKLFDSIHIDN------MKVLKALIY 322
+K+KN+ E + L + +EKKS EA+Q + D + ++ +K+ L
Sbjct: 977 NKVKNLSEEMTALEENISKLTKEKKSLQEAHQ---QALDDLQVEEDKVNGLIKINVKLEQ 1033
Query: 323 AKDDLQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSILE 367
DDL+ ++ K R ++E +++K L DL +SQE + LE
Sbjct: 1034 QTDDLEGSLEQEKKLRADLERIKKK----LEGDLKLSQESIMDLE 1074
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205,764,019
Number of Sequences: 539616
Number of extensions: 8395467
Number of successful extensions: 21224
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 21213
Number of HSP's gapped (non-prelim): 31
length of query: 570
length of database: 191,569,459
effective HSP length: 123
effective length of query: 447
effective length of database: 125,196,691
effective search space: 55962920877
effective search space used: 55962920877
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)