Query 008311
Match_columns 570
No_of_seqs 295 out of 1123
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 22:12:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14576 SEO_N: Sieve element 100.0 2E-110 5E-115 846.8 22.8 284 23-311 1-286 (286)
2 cd03009 TryX_like_TryX_NRX Try 99.9 1.1E-25 2.4E-30 203.4 13.7 127 331-472 3-131 (131)
3 KOG2501 Thioredoxin, nucleored 99.9 1.3E-25 2.7E-30 210.9 10.3 133 329-484 15-152 (157)
4 cd03008 TryX_like_RdCVF Trypar 99.9 4.8E-25 1E-29 206.5 10.8 124 335-470 14-142 (146)
5 cd02964 TryX_like_family Trypa 99.9 2.8E-23 6.1E-28 188.9 13.4 127 329-472 2-132 (132)
6 PF14577 SEO_C: Sieve element 99.9 7.7E-23 1.7E-27 203.1 5.5 91 474-564 1-91 (235)
7 PF13905 Thioredoxin_8: Thiore 99.8 6.5E-19 1.4E-23 150.3 12.2 91 346-453 1-95 (95)
8 cd03012 TlpA_like_DipZ_like Tl 99.7 9.1E-17 2E-21 144.9 9.8 108 336-457 13-122 (126)
9 cd02967 mauD Methylamine utili 99.7 6.9E-16 1.5E-20 135.4 11.0 105 331-457 5-112 (114)
10 PF08534 Redoxin: Redoxin; In 99.6 9.3E-16 2E-20 140.7 10.4 104 334-457 16-131 (146)
11 cd00340 GSH_Peroxidase Glutath 99.6 9.4E-16 2E-20 143.1 6.3 114 331-456 7-138 (152)
12 cd03010 TlpA_like_DsbE TlpA-li 99.6 8.4E-15 1.8E-19 131.5 11.7 103 333-456 10-116 (127)
13 PLN02412 probable glutathione 99.6 2.6E-15 5.6E-20 143.0 8.1 117 329-457 12-147 (167)
14 PTZ00056 glutathione peroxidas 99.6 7E-15 1.5E-19 144.2 10.2 115 331-457 24-161 (199)
15 PTZ00256 glutathione peroxidas 99.6 2.3E-14 5E-19 138.3 13.4 121 326-457 18-164 (183)
16 PF00578 AhpC-TSA: AhpC/TSA fa 99.6 1.8E-14 3.9E-19 127.7 10.4 107 329-455 8-123 (124)
17 PRK14018 trifunctional thiored 99.6 2E-14 4.3E-19 158.7 12.7 113 329-456 41-155 (521)
18 PLN02399 phospholipid hydroper 99.6 1.2E-14 2.7E-19 146.3 9.9 118 329-457 82-217 (236)
19 PRK15412 thiol:disulfide inter 99.5 2.5E-14 5.5E-19 138.1 11.3 100 336-457 57-159 (185)
20 TIGR02540 gpx7 putative glutat 99.5 3.4E-14 7.4E-19 132.6 11.7 114 331-457 7-136 (153)
21 PRK03147 thiol-disulfide oxido 99.5 3.8E-14 8.2E-19 133.2 11.7 109 329-456 44-154 (173)
22 cd02966 TlpA_like_family TlpA- 99.5 7.9E-14 1.7E-18 118.8 10.8 108 331-456 4-113 (116)
23 PLN02919 haloacid dehalogenase 99.5 6.3E-14 1.4E-18 166.7 13.7 116 327-456 396-518 (1057)
24 cd02969 PRX_like1 Peroxiredoxi 99.5 1E-13 2.2E-18 131.3 12.4 117 330-458 8-127 (171)
25 cd02968 SCO SCO (an acronym fo 99.5 1.1E-13 2.4E-18 125.8 10.7 118 329-456 5-139 (142)
26 TIGR02661 MauD methylamine deh 99.5 1.9E-13 4.2E-18 132.6 11.8 105 328-456 54-162 (189)
27 cd03015 PRX_Typ2cys Peroxiredo 99.5 1.7E-13 3.6E-18 130.5 10.9 109 335-457 18-136 (173)
28 cd03017 PRX_BCP Peroxiredoxin 99.5 2E-13 4.4E-18 123.8 10.4 107 330-456 7-125 (140)
29 PRK00522 tpx lipid hydroperoxi 99.5 2E-13 4.4E-18 129.9 10.2 108 331-458 29-148 (167)
30 TIGR03137 AhpC peroxiredoxin. 99.5 1.7E-13 3.6E-18 132.8 9.7 114 328-457 8-135 (187)
31 TIGR00385 dsbE periplasmic pro 99.5 3.4E-13 7.3E-18 128.7 10.6 104 331-456 45-153 (173)
32 cd03014 PRX_Atyp2cys Peroxired 99.4 4.3E-13 9.2E-18 122.9 10.7 109 329-457 9-126 (143)
33 PRK13728 conjugal transfer pro 99.4 2.3E-13 4.9E-18 132.0 8.6 99 327-460 54-156 (181)
34 cd03018 PRX_AhpE_like Peroxire 99.4 6E-13 1.3E-17 122.2 10.4 111 329-457 10-130 (149)
35 PRK10382 alkyl hydroperoxide r 99.4 6E-13 1.3E-17 129.7 10.4 111 331-457 16-135 (187)
36 cd02970 PRX_like2 Peroxiredoxi 99.4 1E-12 2.3E-17 119.7 10.7 107 330-456 6-145 (149)
37 PRK09437 bcp thioredoxin-depen 99.4 1.2E-12 2.6E-17 121.6 11.4 108 329-456 13-135 (154)
38 cd02971 PRX_family Peroxiredox 99.4 1.1E-12 2.4E-17 118.8 10.6 109 330-457 6-126 (140)
39 TIGR01626 ytfJ_HI0045 conserve 99.4 4E-13 8.7E-18 130.6 7.7 103 334-457 47-163 (184)
40 cd03011 TlpA_like_ScsD_MtbDsbE 99.4 9.8E-13 2.1E-17 116.9 9.1 102 330-455 4-107 (123)
41 TIGR02738 TrbB type-F conjugat 99.4 2.5E-12 5.4E-17 121.6 10.4 86 336-456 44-134 (153)
42 PRK13190 putative peroxiredoxi 99.4 2.8E-12 6E-17 126.1 10.1 109 332-456 14-132 (202)
43 PRK13599 putative peroxiredoxi 99.4 3E-12 6.5E-17 127.3 10.2 112 331-456 13-134 (215)
44 KOG2501 Thioredoxin, nucleored 99.3 7.3E-13 1.6E-17 125.0 4.3 66 501-566 28-99 (157)
45 PTZ00137 2-Cys peroxiredoxin; 99.3 7.9E-12 1.7E-16 127.7 10.5 140 301-457 50-204 (261)
46 PRK15000 peroxidase; Provision 99.3 9.7E-12 2.1E-16 122.2 10.6 104 339-456 26-140 (200)
47 PTZ00253 tryparedoxin peroxida 99.3 1.6E-11 3.5E-16 120.0 10.8 110 333-456 23-142 (199)
48 PRK13191 putative peroxiredoxi 99.3 1.3E-11 2.9E-16 122.7 9.8 114 328-456 13-139 (215)
49 cd03016 PRX_1cys Peroxiredoxin 99.2 3.6E-11 7.8E-16 118.1 10.5 110 331-456 10-132 (203)
50 PRK10606 btuE putative glutath 99.2 4.5E-11 9.8E-16 116.3 10.9 55 331-391 10-65 (183)
51 PRK13189 peroxiredoxin; Provis 99.2 4.2E-11 9.2E-16 119.6 10.5 112 329-456 18-141 (222)
52 cd02950 TxlA TRX-like protein 99.2 1.3E-10 2.8E-15 108.3 9.5 73 344-456 18-92 (142)
53 cd02985 TRX_CDSP32 TRX family, 99.1 4.3E-10 9.2E-15 98.6 8.6 73 343-456 12-86 (103)
54 TIGR02740 TraF-like TraF-like 99.1 1.3E-10 2.9E-15 119.4 5.7 91 336-459 156-248 (271)
55 COG1225 Bcp Peroxiredoxin [Pos 99.0 1.9E-09 4.1E-14 102.5 10.8 110 327-456 11-135 (157)
56 cd02999 PDI_a_ERp44_like PDIa 98.9 2.4E-09 5.1E-14 93.8 7.8 67 342-450 14-82 (100)
57 cd02951 SoxW SoxW family; SoxW 98.9 2E-09 4.4E-14 96.8 7.2 83 345-456 12-101 (125)
58 cd02953 DsbDgamma DsbD gamma f 98.9 8.2E-09 1.8E-13 89.8 9.3 74 345-456 10-89 (104)
59 cd02948 TRX_NDPK TRX domain, T 98.9 8.5E-09 1.8E-13 90.1 8.8 69 345-456 16-86 (102)
60 cd02956 ybbN ybbN protein fami 98.9 1.1E-08 2.4E-13 87.2 9.1 68 345-455 11-80 (96)
61 cd02963 TRX_DnaJ TRX domain, D 98.8 3.1E-08 6.6E-13 88.1 8.6 72 343-456 21-94 (111)
62 PHA02278 thioredoxin-like prot 98.7 4E-08 8.7E-13 87.1 7.6 73 345-456 13-87 (103)
63 PF13098 Thioredoxin_2: Thiore 98.7 7.2E-08 1.6E-12 84.4 9.0 92 345-456 4-98 (112)
64 PF02630 SCO1-SenC: SCO1/SenC; 98.7 2.4E-07 5.1E-12 89.2 12.8 118 328-456 34-170 (174)
65 cd02954 DIM1 Dim1 family; Dim1 98.7 7.6E-08 1.7E-12 87.2 8.8 69 345-456 13-83 (114)
66 cd02959 ERp19 Endoplasmic reti 98.7 3.7E-08 8.1E-13 88.9 6.6 72 344-456 17-92 (117)
67 TIGR02187 GlrX_arch Glutaredox 98.6 7.8E-07 1.7E-11 88.1 15.7 165 345-569 19-195 (215)
68 cd03000 PDI_a_TMX3 PDIa family 98.6 9.1E-08 2E-12 83.5 7.4 65 345-448 14-80 (104)
69 cd02952 TRP14_like Human TRX-r 98.6 1.3E-07 2.8E-12 86.3 8.4 80 345-459 20-109 (119)
70 PRK09381 trxA thioredoxin; Pro 98.6 1.7E-07 3.7E-12 82.0 8.8 69 345-456 20-90 (109)
71 PRK10996 thioredoxin 2; Provis 98.6 1.7E-07 3.8E-12 86.8 9.1 69 345-456 51-121 (139)
72 cd02955 SSP411 TRX domain, SSP 98.6 2.4E-07 5.2E-12 85.0 9.8 79 345-457 14-97 (124)
73 cd02993 PDI_a_APS_reductase PD 98.6 2E-07 4.3E-12 82.3 8.6 69 345-452 20-90 (109)
74 cd03003 PDI_a_ERdj5_N PDIa fam 98.6 1.5E-07 3.3E-12 81.4 7.6 68 344-454 16-85 (101)
75 cd03002 PDI_a_MPD1_like PDI fa 98.6 1.9E-07 4E-12 81.3 8.1 68 345-452 17-86 (109)
76 cd03005 PDI_a_ERp46 PDIa famil 98.6 1.3E-07 2.8E-12 81.0 7.0 67 348-454 18-86 (102)
77 PTZ00051 thioredoxin; Provisio 98.6 1.7E-07 3.7E-12 80.1 7.0 68 345-456 17-86 (98)
78 cd02994 PDI_a_TMX PDIa family, 98.5 3.9E-07 8.5E-12 78.6 8.8 67 344-453 15-83 (101)
79 TIGR01126 pdi_dom protein disu 98.5 4.1E-07 8.9E-12 77.4 8.5 71 345-455 12-84 (102)
80 cd02949 TRX_NTR TRX domain, no 98.5 4.4E-07 9.5E-12 78.3 8.8 68 345-455 12-81 (97)
81 cd02997 PDI_a_PDIR PDIa family 98.5 4.4E-07 9.6E-12 77.8 8.0 71 345-454 16-88 (104)
82 cd03004 PDI_a_ERdj5_C PDIa fam 98.5 6.7E-07 1.5E-11 77.5 9.2 68 345-454 18-87 (104)
83 cd02962 TMX2 TMX2 family; comp 98.5 6E-07 1.3E-11 85.1 9.5 78 345-458 46-125 (152)
84 cd02984 TRX_PICOT TRX domain, 98.5 5.1E-07 1.1E-11 76.9 7.9 68 346-456 14-83 (97)
85 cd02996 PDI_a_ERp44 PDIa famil 98.4 5.9E-07 1.3E-11 78.7 7.8 73 345-454 17-91 (108)
86 PTZ00062 glutaredoxin; Provisi 98.4 1.9E-06 4.2E-11 85.4 11.8 145 347-569 18-177 (204)
87 cd03013 PRX5_like Peroxiredoxi 98.4 9.6E-07 2.1E-11 83.4 9.2 103 335-456 17-136 (155)
88 cd02992 PDI_a_QSOX PDIa family 98.4 2.1E-06 4.6E-11 76.9 9.8 75 346-458 19-95 (114)
89 TIGR01068 thioredoxin thioredo 98.4 1.8E-06 3.8E-11 73.1 8.4 67 346-455 14-82 (101)
90 cd02998 PDI_a_ERp38 PDIa famil 98.3 1.6E-06 3.5E-11 74.1 7.7 68 346-452 18-87 (105)
91 cd03006 PDI_a_EFP1_N PDIa fami 98.3 1.9E-06 4.1E-11 77.8 8.2 67 345-453 28-96 (113)
92 cd02961 PDI_a_family Protein D 98.3 3.5E-06 7.7E-11 70.4 8.8 67 345-451 14-82 (101)
93 cd03001 PDI_a_P5 PDIa family, 98.3 5.1E-06 1.1E-10 71.2 9.5 63 346-450 18-82 (103)
94 cd02986 DLP Dim1 family, Dim1- 98.3 2.4E-06 5.1E-11 77.5 7.5 72 345-467 13-87 (114)
95 KOG0907 Thioredoxin [Posttrans 98.3 1.7E-06 3.7E-11 77.3 6.5 65 346-454 21-87 (106)
96 TIGR01295 PedC_BrcD bacterioci 98.3 4.1E-06 8.8E-11 76.4 9.0 38 345-391 22-61 (122)
97 PRK00293 dipZ thiol:disulfide 98.2 3.1E-06 6.7E-11 95.6 9.0 73 344-455 472-549 (571)
98 KOG0910 Thioredoxin-like prote 98.2 1.5E-06 3.3E-11 81.9 5.3 66 346-454 61-128 (150)
99 cd03065 PDI_b_Calsequestrin_N 98.2 4.8E-06 1E-10 76.1 8.1 68 347-455 28-101 (120)
100 COG3118 Thioredoxin domain-con 98.2 2.3E-06 5.1E-11 88.5 6.6 68 344-454 41-110 (304)
101 PTZ00443 Thioredoxin domain-co 98.2 5.6E-06 1.2E-10 83.3 8.5 67 346-455 52-120 (224)
102 COG0450 AhpC Peroxiredoxin [Po 98.1 9.6E-06 2.1E-10 79.5 9.3 105 337-455 24-138 (194)
103 cd03008 TryX_like_RdCVF Trypar 98.1 3.1E-06 6.8E-11 79.8 5.5 59 503-561 22-89 (146)
104 cd02957 Phd_like Phosducin (Ph 98.1 1.3E-05 2.8E-10 71.3 9.1 66 346-456 24-91 (113)
105 PF13905 Thioredoxin_8: Thiore 98.1 5.3E-06 1.2E-10 70.6 6.0 61 506-566 1-66 (95)
106 PLN00410 U5 snRNP protein, DIM 98.1 1E-05 2.2E-10 76.2 8.3 67 345-453 22-90 (142)
107 PF00085 Thioredoxin: Thioredo 98.1 1.7E-05 3.6E-10 67.5 8.8 67 345-453 16-84 (103)
108 cd02995 PDI_a_PDI_a'_C PDIa fa 98.1 1.6E-05 3.5E-10 67.9 8.7 40 346-390 18-59 (104)
109 COG1999 Uncharacterized protei 98.1 3.5E-05 7.5E-10 76.6 11.7 116 329-456 50-186 (207)
110 cd02989 Phd_like_TxnDC9 Phosdu 98.1 1.2E-05 2.7E-10 72.0 7.7 68 345-456 21-90 (113)
111 cd02975 PfPDO_like_N Pyrococcu 98.0 1.3E-05 2.9E-10 71.8 7.3 63 345-450 21-85 (113)
112 cd02987 Phd_like_Phd Phosducin 98.0 3.1E-05 6.8E-10 74.9 10.1 87 346-482 83-172 (175)
113 PTZ00102 disulphide isomerase; 98.0 5.6E-05 1.2E-09 82.4 13.4 62 504-566 247-308 (477)
114 cd02965 HyaE HyaE family; HyaE 98.0 1.7E-05 3.6E-10 71.7 7.4 69 345-456 26-98 (111)
115 PTZ00102 disulphide isomerase; 97.9 1.6E-05 3.4E-10 86.6 7.4 69 345-453 374-444 (477)
116 COG0386 BtuE Glutathione perox 97.9 3.4E-05 7.4E-10 73.1 7.8 117 331-458 10-144 (162)
117 TIGR00424 APS_reduc 5'-adenyly 97.9 3E-05 6.4E-10 85.6 8.5 67 345-450 370-438 (463)
118 cd02960 AGR Anterior Gradient 97.9 4E-05 8.6E-10 71.1 7.9 92 345-483 22-118 (130)
119 cd02947 TRX_family TRX family; 97.9 5.3E-05 1.2E-09 61.8 7.7 65 346-454 10-76 (93)
120 TIGR00411 redox_disulf_1 small 97.8 8.8E-05 1.9E-09 61.1 7.6 36 349-391 2-39 (82)
121 cd02958 UAS UAS family; UAS is 97.7 0.00011 2.5E-09 65.3 8.1 73 344-456 15-93 (114)
122 cd02988 Phd_like_VIAF Phosduci 97.7 0.00019 4.2E-09 70.5 9.9 87 345-482 101-189 (192)
123 TIGR01130 ER_PDI_fam protein d 97.6 0.00013 2.7E-09 78.6 7.6 68 345-452 17-86 (462)
124 PLN02309 5'-adenylylsulfate re 97.6 0.00018 3.9E-09 79.4 8.7 68 345-451 364-433 (457)
125 KOG0191 Thioredoxin/protein di 97.5 0.00038 8.3E-09 74.8 9.8 172 345-566 46-224 (383)
126 TIGR00412 redox_disulf_2 small 97.4 0.00048 1E-08 57.4 7.3 23 351-373 3-27 (76)
127 KOG2792 Putative cytochrome C 97.4 0.00065 1.4E-08 69.3 9.2 120 328-459 121-260 (280)
128 cd02982 PDI_b'_family Protein 97.4 0.00073 1.6E-08 58.0 8.0 66 346-453 12-82 (103)
129 TIGR01295 PedC_BrcD bacterioci 97.4 0.00024 5.3E-09 64.7 5.1 63 502-566 19-96 (122)
130 PF13899 Thioredoxin_7: Thiore 97.4 0.001 2.2E-08 55.9 8.2 22 344-365 15-36 (82)
131 smart00594 UAS UAS domain. 97.3 0.00096 2.1E-08 60.5 8.4 68 344-451 25-97 (122)
132 COG0526 TrxA Thiol-disulfide i 97.3 0.00071 1.5E-08 56.1 6.3 47 338-391 24-72 (127)
133 cd03009 TryX_like_TryX_NRX Try 97.2 0.00093 2E-08 60.3 6.8 58 502-559 14-75 (131)
134 cd01659 TRX_superfamily Thiore 97.1 0.0025 5.4E-08 46.9 7.6 61 350-450 1-63 (69)
135 KOG0852 Alkyl hydroperoxide re 97.1 0.0023 4.9E-08 62.1 8.4 111 330-455 18-138 (196)
136 PHA02125 thioredoxin-like prot 97.1 0.002 4.3E-08 53.4 6.9 16 350-365 2-17 (75)
137 PF13728 TraF: F plasmid trans 97.0 0.0029 6.2E-08 63.4 8.4 91 339-462 113-205 (215)
138 cd02973 TRX_GRX_like Thioredox 96.9 0.003 6.4E-08 50.5 6.7 34 350-391 3-38 (67)
139 PF14595 Thioredoxin_9: Thiore 96.9 0.0019 4.1E-08 59.7 6.1 74 343-456 38-113 (129)
140 cd02964 TryX_like_family Trypa 96.9 0.002 4.4E-08 58.5 6.1 59 498-556 9-71 (132)
141 PF00255 GSHPx: Glutathione pe 96.9 0.0031 6.8E-08 56.8 7.0 55 332-392 7-62 (108)
142 cd03026 AhpF_NTD_C TRX-GRX-lik 96.9 0.0038 8.3E-08 53.9 7.2 70 341-456 7-78 (89)
143 TIGR00411 redox_disulf_1 small 96.8 0.0033 7.2E-08 51.6 6.3 61 508-569 2-62 (82)
144 KOG1651 Glutathione peroxidase 96.8 0.0075 1.6E-07 58.1 9.4 118 331-456 19-151 (171)
145 PHA02278 thioredoxin-like prot 96.8 0.0025 5.4E-08 56.6 5.8 63 504-566 12-78 (103)
146 TIGR02187 GlrX_arch Glutaredox 96.8 0.0042 9.2E-08 61.6 7.9 67 344-452 131-197 (215)
147 cd02950 TxlA TRX-like protein 96.7 0.0041 8.9E-08 58.0 6.4 64 503-566 17-82 (142)
148 TIGR02739 TraF type-F conjugat 96.5 0.0059 1.3E-07 62.9 6.9 92 339-463 143-236 (256)
149 cd02953 DsbDgamma DsbD gamma f 96.4 0.0062 1.3E-07 52.8 5.6 64 503-566 8-78 (104)
150 cd02985 TRX_CDSP32 TRX family, 96.4 0.009 1.9E-07 52.3 6.4 61 505-566 14-77 (103)
151 KOG0908 Thioredoxin-like prote 96.4 0.0072 1.6E-07 61.7 6.4 33 342-374 17-51 (288)
152 cd02948 TRX_NDPK TRX domain, T 96.3 0.0098 2.1E-07 51.8 6.4 62 503-566 14-77 (102)
153 PRK13703 conjugal pilus assemb 96.3 0.0077 1.7E-07 61.7 6.4 91 340-463 137-229 (248)
154 PF06110 DUF953: Eukaryotic pr 96.2 0.017 3.7E-07 52.9 7.2 79 345-456 18-105 (119)
155 cd02956 ybbN ybbN protein fami 96.2 0.016 3.5E-07 49.2 6.7 61 505-566 11-72 (96)
156 cd02951 SoxW SoxW family; SoxW 96.1 0.0079 1.7E-07 54.0 4.9 65 502-566 9-90 (125)
157 cd02954 DIM1 Dim1 family; Dim1 96.1 0.017 3.8E-07 52.5 6.9 61 505-566 13-74 (114)
158 cd02999 PDI_a_ERp44_like PDIa 96.1 0.012 2.6E-07 51.4 5.6 62 504-566 16-78 (100)
159 PF00085 Thioredoxin: Thioredo 95.9 0.023 5.1E-07 48.0 6.7 60 506-566 17-77 (103)
160 cd02955 SSP411 TRX domain, SSP 95.9 0.016 3.5E-07 53.2 5.9 64 503-566 12-86 (124)
161 cd02959 ERp19 Endoplasmic reti 95.9 0.011 2.4E-07 53.4 4.7 62 503-566 16-82 (117)
162 cd02961 PDI_a_family Protein D 95.9 0.02 4.4E-07 47.5 5.9 63 503-566 12-77 (101)
163 TIGR02196 GlrX_YruB Glutaredox 95.8 0.055 1.2E-06 42.7 7.8 16 350-365 2-17 (74)
164 KOG0855 Alkyl hydroperoxide re 95.8 0.025 5.4E-07 54.7 6.6 103 329-451 72-185 (211)
165 TIGR02180 GRX_euk Glutaredoxin 95.7 0.028 6.2E-07 46.2 6.1 32 351-391 2-35 (84)
166 cd02993 PDI_a_APS_reductase PD 95.7 0.026 5.6E-07 49.7 6.2 63 504-566 19-84 (109)
167 cd02949 TRX_NTR TRX domain, no 95.7 0.031 6.7E-07 48.0 6.6 62 504-566 11-73 (97)
168 cd02973 TRX_GRX_like Thioredox 95.7 0.03 6.4E-07 44.6 5.9 59 509-569 3-61 (67)
169 cd03001 PDI_a_P5 PDIa family, 95.7 0.026 5.6E-07 48.2 5.9 61 505-566 17-78 (103)
170 cd03003 PDI_a_ERdj5_N PDIa fam 95.7 0.032 7E-07 48.0 6.5 63 503-566 15-78 (101)
171 PF00462 Glutaredoxin: Glutare 95.6 0.012 2.7E-07 46.2 3.5 57 509-569 1-58 (60)
172 PRK10996 thioredoxin 2; Provis 95.6 0.03 6.4E-07 52.0 6.6 63 503-566 49-112 (139)
173 cd02952 TRP14_like Human TRX-r 95.6 0.024 5.2E-07 51.9 5.7 62 505-566 20-96 (119)
174 cd02947 TRX_family TRX family; 95.6 0.031 6.7E-07 45.3 5.7 61 504-566 8-69 (93)
175 cd02967 mauD Methylamine utili 95.5 0.024 5.2E-07 49.4 5.3 56 505-561 20-76 (114)
176 cd03002 PDI_a_MPD1_like PDI fa 95.5 0.028 6E-07 48.6 5.6 62 505-566 17-80 (109)
177 TIGR00412 redox_disulf_2 small 95.5 0.035 7.6E-07 46.2 6.0 56 509-569 3-58 (76)
178 cd02998 PDI_a_ERp38 PDIa famil 95.5 0.029 6.3E-07 47.7 5.6 62 505-566 17-81 (105)
179 PRK09381 trxA thioredoxin; Pro 95.5 0.041 8.8E-07 48.0 6.5 61 505-566 20-81 (109)
180 cd03004 PDI_a_ERdj5_C PDIa fam 95.4 0.042 9.1E-07 47.4 6.3 61 505-566 18-79 (104)
181 cd03006 PDI_a_EFP1_N PDIa fami 95.3 0.047 1E-06 49.3 6.6 64 503-566 26-90 (113)
182 cd03005 PDI_a_ERp46 PDIa famil 95.3 0.036 7.8E-07 47.2 5.4 61 504-566 15-79 (102)
183 TIGR01130 ER_PDI_fam protein d 95.2 0.095 2E-06 56.5 9.7 60 504-566 362-425 (462)
184 TIGR01068 thioredoxin thioredo 95.2 0.047 1E-06 45.9 5.7 61 505-566 13-74 (101)
185 cd02997 PDI_a_PDIR PDIa family 95.1 0.029 6.4E-07 47.8 4.5 64 503-566 14-81 (104)
186 TIGR00385 dsbE periplasmic pro 95.1 0.035 7.5E-07 53.1 5.4 53 504-559 61-114 (173)
187 cd03010 TlpA_like_DsbE TlpA-li 95.1 0.048 1E-06 48.7 5.9 58 502-561 21-79 (127)
188 cd02965 HyaE HyaE family; HyaE 95.1 0.048 1E-06 49.5 5.8 60 506-566 28-89 (111)
189 PRK03147 thiol-disulfide oxido 95.1 0.046 1E-06 51.3 5.9 52 504-555 59-112 (173)
190 cd02986 DLP Dim1 family, Dim1- 95.0 0.065 1.4E-06 48.9 6.6 61 505-566 13-74 (114)
191 COG4232 Thiol:disulfide interc 95.0 0.051 1.1E-06 61.4 7.1 75 345-456 473-550 (569)
192 cd03000 PDI_a_TMX3 PDIa family 95.0 0.046 9.9E-07 47.5 5.4 63 503-566 12-78 (104)
193 cd02975 PfPDO_like_N Pyrococcu 95.0 0.068 1.5E-06 47.8 6.6 63 503-567 19-82 (113)
194 TIGR02740 TraF-like TraF-like 94.9 0.045 9.7E-07 56.7 5.9 61 504-566 164-235 (271)
195 TIGR02180 GRX_euk Glutaredoxin 94.9 0.047 1E-06 44.9 4.8 58 510-569 2-63 (84)
196 TIGR03143 AhpF_homolog putativ 94.7 0.28 6.1E-06 55.6 12.1 125 430-569 409-538 (555)
197 cd02995 PDI_a_PDI_a'_C PDIa fa 94.7 0.076 1.6E-06 45.1 5.9 60 505-566 17-79 (104)
198 PF13098 Thioredoxin_2: Thiore 94.7 0.031 6.8E-07 48.6 3.5 64 504-567 3-89 (112)
199 PTZ00051 thioredoxin; Provisio 94.7 0.059 1.3E-06 45.7 5.1 61 504-566 16-77 (98)
200 PF03190 Thioredox_DsbH: Prote 94.6 0.2 4.3E-06 48.5 8.9 79 344-456 35-118 (163)
201 cd02984 TRX_PICOT TRX domain, 94.5 0.1 2.2E-06 44.1 6.3 60 506-566 14-74 (97)
202 PRK15412 thiol:disulfide inter 94.5 0.06 1.3E-06 52.1 5.4 54 504-560 66-120 (185)
203 COG2143 Thioredoxin-related pr 94.5 0.1 2.2E-06 50.2 6.6 87 344-456 40-131 (182)
204 cd02963 TRX_DnaJ TRX domain, D 94.4 0.086 1.9E-06 46.7 5.6 60 505-565 23-84 (111)
205 TIGR01126 pdi_dom protein disu 94.3 0.072 1.6E-06 45.0 4.7 62 503-565 10-74 (102)
206 cd03419 GRX_GRXh_1_2_like Glut 94.2 0.11 2.3E-06 42.8 5.5 57 509-569 2-62 (82)
207 cd03012 TlpA_like_DipZ_like Tl 94.1 0.11 2.3E-06 46.8 5.7 58 504-561 21-85 (126)
208 TIGR02190 GlrX-dom Glutaredoxi 94.1 0.093 2E-06 43.8 4.9 61 505-569 6-66 (79)
209 cd02989 Phd_like_TxnDC9 Phosdu 94.0 0.12 2.6E-06 46.2 5.9 62 503-566 19-81 (113)
210 cd02996 PDI_a_ERp44 PDIa famil 94.0 0.15 3.2E-06 44.6 6.3 63 503-566 15-84 (108)
211 cd02966 TlpA_like_family TlpA- 94.0 0.13 2.8E-06 43.3 5.8 46 503-548 16-63 (116)
212 PF13899 Thioredoxin_7: Thiore 94.0 0.037 7.9E-07 46.4 2.3 63 502-566 13-79 (82)
213 cd02968 SCO SCO (an acronym fo 93.9 0.09 2E-06 47.5 4.9 58 503-560 19-85 (142)
214 cd02957 Phd_like Phosducin (Ph 93.8 0.14 3.1E-06 45.3 5.9 58 506-566 24-82 (113)
215 PRK11657 dsbG disulfide isomer 93.8 0.67 1.5E-05 47.5 11.5 101 345-454 116-233 (251)
216 cd03026 AhpF_NTD_C TRX-GRX-lik 93.6 0.18 3.8E-06 43.6 5.9 63 505-569 12-74 (89)
217 TIGR02661 MauD methylamine deh 93.5 0.13 2.8E-06 50.1 5.5 55 503-560 71-126 (189)
218 cd03011 TlpA_like_ScsD_MtbDsbE 93.3 0.14 3E-06 45.3 4.9 41 502-546 16-57 (123)
219 TIGR02738 TrbB type-F conjugat 93.3 0.23 5.1E-06 47.2 6.7 44 503-548 47-91 (153)
220 cd03418 GRX_GRXb_1_3_like Glut 93.3 0.14 3E-06 41.5 4.5 57 509-569 2-60 (75)
221 PF13192 Thioredoxin_3: Thiore 93.2 0.16 3.5E-06 42.2 5.0 56 509-569 3-58 (76)
222 cd02962 TMX2 TMX2 family; comp 93.1 0.25 5.5E-06 47.0 6.7 61 505-566 46-114 (152)
223 cd03029 GRX_hybridPRX5 Glutare 93.1 0.19 4.1E-06 40.9 5.1 58 508-569 2-59 (72)
224 cd02994 PDI_a_TMX PDIa family, 93.0 0.25 5.3E-06 42.3 5.9 61 504-566 15-77 (101)
225 TIGR02194 GlrX_NrdH Glutaredox 92.9 0.18 4E-06 41.1 4.7 55 510-569 2-57 (72)
226 TIGR02196 GlrX_YruB Glutaredox 92.8 0.2 4.3E-06 39.5 4.7 57 509-569 2-59 (74)
227 cd03020 DsbA_DsbC_DsbG DsbA fa 92.7 0.5 1.1E-05 46.0 8.3 98 345-454 76-184 (197)
228 PRK10638 glutaredoxin 3; Provi 92.6 0.19 4.2E-06 42.2 4.6 58 508-569 3-61 (83)
229 cd02982 PDI_b'_family Protein 92.4 0.26 5.7E-06 42.1 5.2 60 506-566 12-74 (103)
230 TIGR02181 GRX_bact Glutaredoxi 92.4 0.18 4E-06 41.5 4.1 57 509-569 1-58 (79)
231 TIGR02200 GlrX_actino Glutared 92.2 0.28 6.1E-06 39.5 4.9 57 509-569 2-60 (77)
232 KOG0907 Thioredoxin [Posttrans 92.2 0.28 6.1E-06 44.0 5.3 60 505-566 20-80 (106)
233 cd01659 TRX_superfamily Thiore 92.0 0.41 8.8E-06 34.7 5.2 57 511-568 3-61 (69)
234 PF00462 Glutaredoxin: Glutare 91.9 1.3 2.7E-05 34.7 8.2 15 351-365 2-16 (60)
235 cd02987 Phd_like_Phd Phosducin 91.8 0.42 9.1E-06 46.4 6.4 58 506-566 83-141 (175)
236 KOG0911 Glutaredoxin-related p 91.8 0.31 6.8E-06 49.2 5.6 170 345-565 16-196 (227)
237 cd02992 PDI_a_QSOX PDIa family 91.7 0.39 8.5E-06 42.9 5.7 62 505-566 18-84 (114)
238 cd02991 UAS_ETEA UAS family, E 91.6 1 2.2E-05 40.9 8.3 68 344-451 15-87 (116)
239 cd03027 GRX_DEP Glutaredoxin ( 91.1 0.39 8.5E-06 39.1 4.7 57 509-569 3-60 (73)
240 PRK14018 trifunctional thiored 91.1 0.37 8E-06 54.5 6.0 41 505-545 55-97 (521)
241 TIGR02200 GlrX_actino Glutared 90.9 0.6 1.3E-05 37.5 5.6 16 350-365 2-17 (77)
242 PLN00410 U5 snRNP protein, DIM 90.9 0.73 1.6E-05 43.6 6.9 60 505-565 22-82 (142)
243 COG3118 Thioredoxin domain-con 90.8 0.45 9.8E-06 50.0 5.9 58 507-565 44-102 (304)
244 PHA02125 thioredoxin-like prot 90.6 0.4 8.8E-06 39.5 4.4 50 511-568 3-53 (75)
245 cd02066 GRX_family Glutaredoxi 90.3 0.51 1.1E-05 36.8 4.6 57 509-569 2-59 (72)
246 PLN02309 5'-adenylylsulfate re 90.3 0.62 1.3E-05 52.0 6.7 63 504-566 363-428 (457)
247 PF14595 Thioredoxin_9: Thiore 90.2 0.44 9.6E-06 44.1 4.7 62 505-567 40-104 (129)
248 cd03060 GST_N_Omega_like GST_N 90.1 0.61 1.3E-05 37.6 5.0 56 510-569 2-58 (71)
249 PRK11200 grxA glutaredoxin 1; 89.8 0.61 1.3E-05 39.2 4.9 61 509-569 3-67 (85)
250 cd02976 NrdH NrdH-redoxin (Nrd 89.6 0.75 1.6E-05 36.1 5.0 57 509-569 2-59 (73)
251 cd02972 DsbA_family DsbA famil 89.6 2.3 5E-05 34.7 8.2 85 351-448 2-91 (98)
252 cd00570 GST_N_family Glutathio 89.5 0.68 1.5E-05 35.3 4.7 55 511-569 3-58 (71)
253 KOG3425 Uncharacterized conser 89.5 0.68 1.5E-05 42.8 5.1 40 345-391 24-73 (128)
254 PTZ00443 Thioredoxin domain-co 89.4 0.76 1.6E-05 46.5 6.1 60 506-566 52-112 (224)
255 PRK10877 protein disulfide iso 89.4 3.7 7.9E-05 41.6 11.0 95 345-454 106-214 (232)
256 KOG0190 Protein disulfide isom 89.4 0.71 1.5E-05 51.8 6.3 31 345-375 41-73 (493)
257 cd03007 PDI_a_ERp29_N PDIa fam 88.9 2 4.3E-05 39.4 7.8 20 430-449 68-89 (116)
258 cd03017 PRX_BCP Peroxiredoxin 88.8 0.68 1.5E-05 41.7 4.8 58 503-561 20-80 (140)
259 TIGR00424 APS_reduc 5'-adenyly 88.6 0.92 2E-05 50.7 6.5 63 504-566 369-434 (463)
260 cd02960 AGR Anterior Gradient 88.5 0.8 1.7E-05 42.7 5.1 62 503-566 20-85 (130)
261 KOG0912 Thiol-disulfide isomer 88.5 1.2 2.7E-05 47.0 7.0 42 346-391 13-56 (375)
262 PF05988 DUF899: Bacterial pro 88.5 2.6 5.7E-05 42.4 9.0 107 328-456 48-171 (211)
263 PF08534 Redoxin: Redoxin; In 88.5 0.93 2E-05 41.3 5.5 54 504-558 26-82 (146)
264 KOG0190 Protein disulfide isom 88.5 0.45 9.8E-06 53.3 4.0 62 313-374 338-414 (493)
265 PF00578 AhpC-TSA: AhpC/TSA fa 88.3 1.3 2.9E-05 38.8 6.2 56 502-558 21-79 (124)
266 COG2077 Tpx Peroxiredoxin [Pos 87.9 6.8 0.00015 37.7 10.8 118 329-464 27-154 (158)
267 PRK11200 grxA glutaredoxin 1; 87.8 1.5 3.2E-05 36.9 5.9 34 350-391 3-38 (85)
268 PRK10329 glutaredoxin-like pro 87.5 1.2 2.7E-05 37.7 5.2 56 509-569 3-59 (81)
269 cd02970 PRX_like2 Peroxiredoxi 87.2 1.3 2.9E-05 39.9 5.7 46 506-551 24-71 (149)
270 cd03014 PRX_Atyp2cys Peroxired 87.2 1.3 2.9E-05 40.2 5.7 45 504-549 24-70 (143)
271 cd03023 DsbA_Com1_like DsbA fa 87.2 1.2 2.6E-05 40.3 5.3 39 345-391 4-44 (154)
272 PRK00522 tpx lipid hydroperoxi 86.5 1.5 3.3E-05 41.7 5.9 57 504-562 42-100 (167)
273 TIGR02189 GlrX-like_plant Glut 86.3 1.2 2.7E-05 39.0 4.8 59 507-569 8-70 (99)
274 PTZ00056 glutathione peroxidas 85.6 1.4 3.1E-05 43.4 5.4 58 504-561 37-103 (199)
275 PF00837 T4_deiodinase: Iodoth 85.6 4.5 9.7E-05 41.5 9.0 121 325-458 78-218 (237)
276 PRK13728 conjugal transfer pro 84.9 1.6 3.4E-05 43.0 5.2 38 509-548 73-110 (181)
277 KOG1731 FAD-dependent sulfhydr 84.6 0.92 2E-05 51.5 3.8 67 347-450 58-126 (606)
278 PLN02919 haloacid dehalogenase 84.6 1.4 3E-05 54.0 5.7 43 503-545 417-461 (1057)
279 PRK09437 bcp thioredoxin-depen 84.3 1.3 2.9E-05 40.9 4.3 58 503-561 27-87 (154)
280 PHA03050 glutaredoxin; Provisi 84.2 2.1 4.6E-05 38.4 5.3 61 505-569 11-78 (108)
281 PF13462 Thioredoxin_4: Thiore 83.4 4.5 9.9E-05 37.1 7.4 48 339-391 5-54 (162)
282 cd02969 PRX_like1 Peroxiredoxi 83.3 2.5 5.4E-05 40.0 5.7 58 505-562 24-90 (171)
283 cd02958 UAS UAS family; UAS is 83.3 2.5 5.5E-05 37.3 5.4 66 502-567 13-83 (114)
284 PF13417 GST_N_3: Glutathione 82.7 2.9 6.3E-05 34.1 5.2 55 511-569 1-55 (75)
285 cd03419 GRX_GRXh_1_2_like Glut 82.5 4.3 9.4E-05 33.1 6.2 32 351-391 3-34 (82)
286 PF05176 ATP-synt_10: ATP10 pr 82.3 9.2 0.0002 39.5 9.8 118 329-456 102-232 (252)
287 cd03015 PRX_Typ2cys Peroxiredo 82.1 2.1 4.5E-05 40.7 4.7 46 504-549 27-75 (173)
288 COG0526 TrxA Thiol-disulfide i 81.5 3 6.5E-05 34.0 4.9 60 506-565 32-94 (127)
289 cd02971 PRX_family Peroxiredox 81.1 3.3 7.2E-05 37.1 5.5 54 503-557 19-75 (140)
290 cd03045 GST_N_Delta_Epsilon GS 80.7 3.1 6.6E-05 33.4 4.6 56 510-569 2-60 (74)
291 cd03018 PRX_AhpE_like Peroxire 80.6 3.3 7.1E-05 37.7 5.3 57 504-561 25-85 (149)
292 COG0695 GrxC Glutaredoxin and 80.5 4 8.6E-05 34.5 5.4 57 509-569 3-62 (80)
293 PF04592 SelP_N: Selenoprotein 80.3 8.5 0.00018 39.5 8.5 123 338-478 18-143 (238)
294 cd03041 GST_N_2GST_N GST_N fam 80.2 3.2 6.9E-05 34.2 4.6 55 509-567 2-57 (77)
295 cd02976 NrdH NrdH-redoxin (Nrd 80.0 4.8 0.0001 31.4 5.5 16 350-365 2-17 (73)
296 TIGR02183 GRXA Glutaredoxin, G 79.7 3.1 6.6E-05 35.4 4.5 62 508-569 1-66 (86)
297 KOG4277 Uncharacterized conser 79.5 1.1 2.5E-05 47.2 2.0 67 347-450 44-110 (468)
298 cd03059 GST_N_SspA GST_N famil 79.4 4.3 9.2E-05 32.3 5.0 55 510-568 2-56 (73)
299 cd02988 Phd_like_VIAF Phosduci 79.4 2.8 6.1E-05 41.4 4.7 56 506-566 102-158 (192)
300 PHA03050 glutaredoxin; Provisi 79.2 2.2 4.7E-05 38.3 3.6 35 350-390 15-49 (108)
301 PRK00293 dipZ thiol:disulfide 78.9 1.5 3.2E-05 50.3 2.9 63 503-566 471-540 (571)
302 cd00340 GSH_Peroxidase Glutath 78.3 4.6 0.0001 37.5 5.6 55 503-558 19-82 (152)
303 cd03055 GST_N_Omega GST_N fami 77.4 6 0.00013 33.6 5.6 61 505-569 15-76 (89)
304 TIGR02540 gpx7 putative glutat 77.2 5 0.00011 37.3 5.5 55 503-557 19-82 (153)
305 cd03019 DsbA_DsbA DsbA family, 77.1 4.4 9.6E-05 37.8 5.2 41 505-545 14-57 (178)
306 PF13728 TraF: F plasmid trans 77.0 4.9 0.00011 40.4 5.7 50 514-565 129-188 (215)
307 PLN02412 probable glutathione 76.9 4.6 9.9E-05 38.5 5.3 44 503-546 26-71 (167)
308 PTZ00062 glutaredoxin; Provisi 76.7 4.7 0.0001 40.4 5.5 50 507-566 18-68 (204)
309 TIGR03137 AhpC peroxiredoxin. 76.1 4 8.6E-05 39.7 4.7 47 503-549 28-77 (187)
310 cd03051 GST_N_GTT2_like GST_N 76.1 6.9 0.00015 30.9 5.3 55 510-568 2-59 (74)
311 KOG3425 Uncharacterized conser 75.9 6.2 0.00013 36.6 5.5 64 503-566 22-101 (128)
312 cd02066 GRX_family Glutaredoxi 75.8 6.4 0.00014 30.4 5.0 16 350-365 2-17 (72)
313 COG4545 Glutaredoxin-related p 75.5 8 0.00017 33.2 5.6 71 351-455 5-77 (85)
314 cd03023 DsbA_Com1_like DsbA fa 75.2 6 0.00013 35.6 5.4 38 505-543 4-42 (154)
315 PLN02399 phospholipid hydroper 74.9 5.6 0.00012 40.7 5.5 43 504-546 97-141 (236)
316 PRK12759 bifunctional gluaredo 74.7 4.4 9.5E-05 44.6 5.0 58 508-569 3-69 (410)
317 KOG0191 Thioredoxin/protein di 74.6 9.1 0.0002 41.3 7.4 67 346-452 162-230 (383)
318 PTZ00256 glutathione peroxidas 74.2 4.6 0.0001 39.0 4.6 44 503-546 37-83 (183)
319 PF13848 Thioredoxin_6: Thiore 71.0 49 0.0011 30.8 10.7 119 431-565 32-156 (184)
320 PF13192 Thioredoxin_3: Thiore 70.4 31 0.00067 28.4 8.1 20 434-456 43-62 (76)
321 cd03065 PDI_b_Calsequestrin_N 68.9 9.4 0.0002 35.0 5.1 61 505-566 26-93 (120)
322 TIGR02739 TraF type-F conjugat 68.4 8.1 0.00018 40.1 5.0 41 505-548 151-191 (256)
323 cd03028 GRX_PICOT_like Glutare 68.1 8.9 0.00019 32.8 4.5 49 517-569 23-72 (90)
324 TIGR02189 GlrX-like_plant Glut 67.6 16 0.00034 32.0 6.1 15 351-365 11-25 (99)
325 TIGR02183 GRXA Glutaredoxin, G 67.4 16 0.00035 31.0 5.9 20 350-369 2-23 (86)
326 PF06110 DUF953: Eukaryotic pr 67.4 18 0.00038 33.4 6.5 62 504-565 17-94 (119)
327 cd03049 GST_N_3 GST_N family, 65.9 15 0.00033 29.4 5.2 55 511-569 3-60 (73)
328 cd03027 GRX_DEP Glutaredoxin ( 65.6 13 0.00029 30.0 4.9 15 351-365 4-18 (73)
329 cd03037 GST_N_GRX2 GST_N famil 65.5 13 0.00028 29.6 4.8 54 511-569 3-57 (71)
330 TIGR00365 monothiol glutaredox 63.9 12 0.00025 32.8 4.5 50 516-569 26-76 (97)
331 TIGR02181 GRX_bact Glutaredoxi 63.8 12 0.00027 30.5 4.4 15 351-365 2-16 (79)
332 cd03019 DsbA_DsbA DsbA family, 62.5 15 0.00032 34.3 5.2 40 345-391 14-55 (178)
333 cd03058 GST_N_Tau GST_N family 62.5 18 0.0004 29.0 5.1 55 510-568 2-57 (74)
334 PRK13703 conjugal pilus assemb 59.6 20 0.00043 37.1 5.9 41 504-547 143-183 (248)
335 cd03418 GRX_GRXb_1_3_like Glut 59.5 22 0.00047 28.5 5.1 15 351-365 3-17 (75)
336 PRK10638 glutaredoxin 3; Provi 59.5 47 0.001 27.6 7.3 15 351-365 5-19 (83)
337 PRK10329 glutaredoxin-like pro 58.3 28 0.00061 29.4 5.7 15 351-365 4-18 (81)
338 cd03028 GRX_PICOT_like Glutare 58.0 43 0.00093 28.6 6.9 21 344-365 5-30 (90)
339 smart00594 UAS UAS domain. 57.5 24 0.00051 31.8 5.5 66 501-566 22-92 (122)
340 PRK10606 btuE putative glutath 56.0 19 0.00041 35.4 4.9 54 503-557 22-84 (183)
341 PF09695 YtfJ_HI0045: Bacteria 55.9 87 0.0019 30.5 9.1 108 336-456 27-140 (160)
342 cd03042 GST_N_Zeta GST_N famil 55.3 22 0.00048 28.0 4.4 55 511-569 3-60 (73)
343 KOG0854 Alkyl hydroperoxide re 54.6 69 0.0015 31.9 8.3 114 327-455 11-145 (224)
344 cd03040 GST_N_mPGES2 GST_N fam 53.3 25 0.00055 28.4 4.5 53 509-567 2-54 (77)
345 cd03052 GST_N_GDAP1 GST_N fami 52.7 24 0.00052 28.8 4.3 55 511-569 3-60 (73)
346 PRK15000 peroxidase; Provision 52.7 23 0.0005 35.0 5.0 45 505-549 33-80 (200)
347 TIGR00365 monothiol glutaredox 51.7 66 0.0014 28.0 7.2 21 345-365 10-34 (97)
348 cd03020 DsbA_DsbC_DsbG DsbA fa 51.5 23 0.0005 34.4 4.7 41 505-547 76-117 (197)
349 COG4312 Uncharacterized protei 51.3 27 0.00059 35.7 5.1 74 326-415 52-135 (247)
350 cd02977 ArsC_family Arsenate R 51.0 26 0.00056 30.6 4.5 48 509-560 1-49 (105)
351 cd03076 GST_N_Pi GST_N family, 50.5 21 0.00046 28.9 3.6 55 511-569 4-58 (73)
352 cd02972 DsbA_family DsbA famil 50.3 29 0.00062 28.1 4.4 37 511-547 3-41 (98)
353 PRK11509 hydrogenase-1 operon 50.3 10 0.00022 35.6 1.9 25 431-456 82-106 (132)
354 PF04108 APG17: Autophagy prot 50.0 69 0.0015 35.4 8.5 47 262-308 198-248 (412)
355 PRK09481 sspA stringent starva 49.7 24 0.00052 34.4 4.5 57 509-569 11-67 (211)
356 cd03056 GST_N_4 GST_N family, 49.7 33 0.00072 26.9 4.6 56 510-569 2-60 (73)
357 PF05768 DUF836: Glutaredoxin- 49.5 37 0.0008 28.4 5.0 57 508-568 1-57 (81)
358 PTZ00253 tryparedoxin peroxida 48.8 29 0.00063 33.9 4.9 48 503-550 33-83 (199)
359 KOG0914 Thioredoxin-like prote 48.4 21 0.00046 36.5 3.9 113 326-476 115-239 (265)
360 PRK10382 alkyl hydroperoxide r 48.3 31 0.00067 33.9 5.0 47 504-550 29-78 (187)
361 PRK13190 putative peroxiredoxi 48.0 30 0.00064 34.1 4.9 47 504-550 25-74 (202)
362 cd03033 ArsC_15kD Arsenate Red 47.7 24 0.00052 31.9 3.8 52 509-564 2-54 (113)
363 PF13462 Thioredoxin_4: Thiore 47.6 41 0.00088 30.7 5.5 39 508-546 15-55 (162)
364 PRK13189 peroxiredoxin; Provis 47.1 31 0.00067 34.7 4.9 47 504-550 33-82 (222)
365 cd03050 GST_N_Theta GST_N fami 45.9 40 0.00088 27.1 4.6 56 510-569 2-60 (76)
366 cd03036 ArsC_like Arsenate Red 43.9 33 0.00071 30.6 4.1 48 509-560 1-49 (111)
367 PTZ00137 2-Cys peroxiredoxin; 43.3 39 0.00084 35.2 5.1 45 505-549 97-144 (261)
368 cd03044 GST_N_EF1Bgamma GST_N 43.2 52 0.0011 26.6 4.9 55 511-569 3-60 (75)
369 TIGR03759 conj_TIGR03759 integ 42.5 49 0.0011 33.2 5.4 54 505-562 108-161 (200)
370 cd03031 GRX_GRX_like Glutaredo 42.3 40 0.00086 32.1 4.6 57 509-569 2-69 (147)
371 KOG1752 Glutaredoxin and relat 41.1 1.1E+02 0.0024 27.5 7.0 58 350-446 16-73 (104)
372 cd03032 ArsC_Spx Arsenate Redu 40.9 36 0.00078 30.5 3.9 47 509-559 2-49 (115)
373 PF13778 DUF4174: Domain of un 39.9 1.5E+02 0.0032 26.9 7.8 84 340-453 2-91 (118)
374 cd03053 GST_N_Phi GST_N family 39.3 73 0.0016 25.4 5.2 57 509-569 2-61 (76)
375 TIGR02194 GlrX_NrdH Glutaredox 38.4 75 0.0016 25.6 5.1 15 351-365 2-16 (72)
376 PRK12759 bifunctional gluaredo 36.6 85 0.0018 34.6 6.7 16 350-365 4-19 (410)
377 PRK15113 glutathione S-transfe 35.6 71 0.0015 31.2 5.4 59 507-569 4-67 (214)
378 PRK13599 putative peroxiredoxi 35.2 60 0.0013 32.5 4.8 47 504-550 26-75 (215)
379 PRK13191 putative peroxiredoxi 35.2 57 0.0012 32.7 4.6 47 504-550 31-80 (215)
380 PRK11657 dsbG disulfide isomer 34.5 58 0.0013 33.4 4.7 40 504-543 115-155 (251)
381 PRK13344 spxA transcriptional 34.0 73 0.0016 29.5 4.9 48 509-560 2-50 (132)
382 PF02114 Phosducin: Phosducin; 34.0 1.9E+02 0.004 30.2 8.3 92 345-485 145-238 (265)
383 cd03046 GST_N_GTT1_like GST_N 33.6 80 0.0017 25.1 4.5 54 511-569 3-59 (76)
384 cd03047 GST_N_2 GST_N family, 33.4 76 0.0016 25.3 4.4 55 511-569 3-60 (73)
385 cd03039 GST_N_Sigma_like GST_N 33.0 79 0.0017 25.1 4.4 54 511-568 3-57 (72)
386 PF02798 GST_N: Glutathione S- 32.5 95 0.0021 25.4 4.8 43 527-569 15-62 (76)
387 TIGR02190 GlrX-dom Glutaredoxi 31.7 46 0.001 27.5 2.9 17 349-365 9-25 (79)
388 cd03038 GST_N_etherase_LigE GS 31.6 72 0.0016 26.3 4.0 58 512-569 6-67 (84)
389 cd03057 GST_N_Beta GST_N famil 30.5 1.1E+02 0.0024 24.5 4.9 54 511-569 3-60 (77)
390 COG1331 Highly conserved prote 30.3 1.1E+02 0.0025 35.9 6.5 21 345-365 42-62 (667)
391 cd03016 PRX_1cys Peroxiredoxin 29.6 74 0.0016 31.3 4.4 40 510-549 31-71 (203)
392 cd03061 GST_N_CLIC GST_N famil 29.2 76 0.0016 27.8 3.9 49 517-569 22-70 (91)
393 PF09767 DUF2053: Predicted me 28.7 55 0.0012 31.7 3.2 84 144-241 27-115 (159)
394 PLN02378 glutathione S-transfe 28.7 59 0.0013 31.9 3.5 49 517-569 20-68 (213)
395 cd03054 GST_N_Metaxin GST_N fa 28.3 1.1E+02 0.0023 24.4 4.4 42 517-569 16-57 (72)
396 cd03029 GRX_hybridPRX5 Glutare 27.6 66 0.0014 25.7 3.1 16 350-365 3-18 (72)
397 PF06053 DUF929: Domain of unk 27.5 39 0.00085 35.0 2.0 29 345-373 57-87 (249)
398 KOG0910 Thioredoxin-like prote 27.4 1.2E+02 0.0025 29.3 5.1 60 505-565 60-120 (150)
399 cd03035 ArsC_Yffb Arsenate Red 27.2 78 0.0017 28.1 3.7 49 509-561 1-50 (105)
400 TIGR00014 arsC arsenate reduct 27.0 95 0.0021 27.8 4.2 51 509-563 1-52 (114)
401 PRK10954 periplasmic protein d 26.1 88 0.0019 30.7 4.2 52 493-544 24-81 (207)
402 PF13409 GST_N_2: Glutathione 26.0 90 0.002 25.1 3.6 49 517-569 2-55 (70)
403 PRK10954 periplasmic protein d 25.7 92 0.002 30.6 4.3 30 344-373 35-69 (207)
404 TIGR03143 AhpF_homolog putativ 25.6 1.4E+02 0.003 34.0 6.2 66 344-455 474-541 (555)
405 PRK01655 spxA transcriptional 25.4 1.2E+02 0.0025 28.0 4.6 47 509-559 2-49 (131)
406 PF06073 DUF934: Bacterial pro 25.2 74 0.0016 29.1 3.2 72 399-476 6-80 (110)
407 PRK12559 transcriptional regul 25.0 1.5E+02 0.0033 27.4 5.3 46 509-558 2-48 (131)
408 KOG3414 Component of the U4/U6 24.9 2.6E+02 0.0057 26.5 6.6 38 345-390 22-61 (142)
409 PF03190 Thioredox_DsbH: Prote 24.2 54 0.0012 31.9 2.2 63 504-566 35-108 (163)
410 TIGR01617 arsC_related transcr 23.7 93 0.002 27.8 3.5 47 510-560 2-49 (117)
411 TIGR00862 O-ClC intracellular 23.3 96 0.0021 31.7 4.0 49 517-569 19-67 (236)
412 cd03013 PRX5_like Peroxiredoxi 23.3 1E+02 0.0022 29.0 3.9 47 504-550 27-78 (155)
413 PRK14089 ipid-A-disaccharide s 22.9 3.4E+02 0.0073 29.4 8.2 53 505-557 166-218 (347)
414 cd03007 PDI_a_ERp29_N PDIa fam 21.5 1.8E+02 0.0038 26.7 4.9 62 503-565 15-85 (116)
415 PF01323 DSBA: DSBA-like thior 21.4 1.7E+02 0.0037 27.4 5.1 41 508-548 1-42 (193)
416 smart00188 IL10 Interleukin-10 21.1 1.4E+02 0.003 28.4 4.2 52 263-320 71-122 (137)
417 PF02630 SCO1-SenC: SCO1/SenC; 20.9 3.4E+02 0.0074 26.0 7.0 62 498-559 44-113 (174)
418 PRK10824 glutaredoxin-4; Provi 20.8 1.9E+02 0.0042 26.4 5.0 49 350-419 17-72 (115)
419 COG1999 Uncharacterized protei 20.6 2.7E+02 0.0058 27.8 6.4 59 499-557 60-127 (207)
420 COG2143 Thioredoxin-related pr 20.5 2E+02 0.0044 28.2 5.2 68 503-570 39-125 (182)
No 1
>PF14576 SEO_N: Sieve element occlusion N-terminus
Probab=100.00 E-value=2.3e-110 Score=846.82 Aligned_cols=284 Identities=62% Similarity=0.992 Sum_probs=269.1
Q ss_pred cCcchhHHHHHhhhcCCCCCccChhhhHHHHHHHHhhhcccccccc-chhhhhhhh-hhhhhhhhhhhhhcchhhhhhhh
Q 008311 23 ISDDNMMMRQIQATHAPDGREVDVKPLFNLVEDILNRATFQTDIDE-TDAQAHLEI-EDNAQQAGFLAMIDAISFTIDRI 100 (570)
Q Consensus 23 ~sd~~i~~~~i~~tH~~d~~~~D~~~l~~~v~~i~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~i 100 (570)
+|||++||||||+||+||||+|||+|||++||||++||+++++... ...+.+.+. +++..+.++.+++||++|+||||
T Consensus 1 ~~~D~~ilk~I~~TH~pd~~~~Dv~~Ll~~venIl~~at~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~l~~~i~rI 80 (286)
T PF14576_consen 1 TSDDDQILKQIYATHVPDGRKFDVEPLLHLVENILKRATPIVGDSIDTVVQKHPEALEDKDYQIEPIASFEPLFYTIKRI 80 (286)
T ss_pred CCcHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHhhhhhcchhhhhhhcchhhhhhhhcccchHhhcCchhHHHHHH
Confidence 4688888999999999999999999999999999999988773222 233444444 67778888899999999999999
Q ss_pred hhheeeccCCCCchhhhHHHHHhhhccCcchhHHHHHHHHHHhhhhhhhhhhhccCCcHHHHHHHHHcCCchhhhccCCC
Q 008311 101 SCEIACKALGGSDAHATTLSLFSMLSNYSWDAKLVLALAAFALYYGEFWLLAQIYSSNQLAKSMAILKQLPSIMEHTSGP 180 (570)
Q Consensus 101 s~em~~k~~~~~~~h~tt~~il~~L~~ysWdaK~vl~laAFal~YGefw~l~q~~~~~~lakS~a~lkq~p~~~~~~~~~ 180 (570)
||||+|||+||+|||+|||+|||+||+|||||||||||||||+||||||||+|+|++||||||||+|||||+|+||. ++
T Consensus 81 Scem~ck~~g~~~aH~TTm~Il~~Ls~YsWDAK~VLtLAAFAl~YGeFwlLaq~~~~n~LakSlA~LkqlP~i~~~~-~~ 159 (286)
T PF14576_consen 81 SCEMSCKCSGEEDAHQTTMSILNMLSSYSWDAKAVLTLAAFALEYGEFWLLAQIYPTNPLAKSLAILKQLPDILEHS-DS 159 (286)
T ss_pred HHHheecCCCCchHhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhHHHHhhhcccCHHHHHHHHHhcchhhhhhh-hc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CcchhhhHHHHHHHHHHHhhhhhhcccCCcccccCCcccHHHHhhhchhHHHHHHHHHHHHhhhcccccccCcccccccc
Q 008311 181 LKSRFDTLNNLIKAMMGVTRCIVEFKDMPSNYITQDAPEFSSAMAHIPIAVYWTIRSVVACATQITTLTGMGHEFVISTS 260 (570)
Q Consensus 181 ~k~~~~~~~~Lvk~~~~v~~~i~e~~~l~~~y~~~d~p~l~~a~~~ip~~vYW~I~s~vac~~~i~~l~~~~~~~~~~~~ 260 (570)
+||||+++|+|||+||||++||+||++||++||++|||+|++|++|||++|||||||+|||++||++||+||+| +.+++
T Consensus 160 lk~r~~~ln~LVk~mldV~~cIief~~L~~~y~~~Dvpal~~a~~~IPvavYWtI~siVAc~sqI~~lt~~~~e-~~~~~ 238 (286)
T PF14576_consen 160 LKPRFDALNNLVKAMLDVTKCIIEFEELPSQYITKDVPALSTALAHIPVAVYWTIRSIVACASQITGLTGMGHE-ITSTT 238 (286)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHcChhhccccchhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcccc-cccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 88999
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhhhcch
Q 008311 261 EAWELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSIHI 311 (570)
Q Consensus 261 ~~~els~~~~kl~~i~~~L~~~l~~c~~~i~~~~~~e~Y~~l~~lf~~~~~ 311 (570)
++||||+|++||++|++|||+||+.|++||++ +|+|++|+++|++||+
T Consensus 239 ~~~eLS~l~~KL~~I~~~Lk~qL~~C~~~I~~---~E~y~~l~~lf~t~~~ 286 (286)
T PF14576_consen 239 EAWELSSLAHKLSNILSHLKKQLDLCRQQIEE---IEDYQMLLKLFETPHI 286 (286)
T ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999 9999999999999863
No 2
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.93 E-value=1.1e-25 Score=203.45 Aligned_cols=127 Identities=26% Similarity=0.451 Sum_probs=111.8
Q ss_pred ccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH
Q 008311 331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET 408 (570)
Q Consensus 331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~ 408 (570)
+.+.+|+.+++++++||+|+|+|||+||++|+.++ |.++|+++++ .+.+++|++|++ |.+.+.|.+
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~----~~~~~~vv~is~--------d~~~~~~~~ 70 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE----SGKNFEIVFISW--------DRDEESFND 70 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHh----cCCCEEEEEEEC--------CCCHHHHHH
Confidence 45678999999999999999999999999999999 9999999974 135799999996 344578888
Q ss_pred HHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCC
Q 008311 409 LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPF 472 (570)
Q Consensus 409 ~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPF 472 (570)
+.+++||+.++|+ +.+....+.+.|++.++|+++|||++|+|+.+++++++..||..||||
T Consensus 71 ~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 71 YFSKMPWLAVPFS---DRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred HHHcCCeeEcccC---CHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 8888999999885 223456788999999999999999999999999999999999999998
No 3
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.92 E-value=1.3e-25 Score=210.87 Aligned_cols=133 Identities=23% Similarity=0.300 Sum_probs=116.1
Q ss_pred CcccCCCCCeeecc-ccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311 329 PLVDGSTKRRVNIE-VLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK 405 (570)
Q Consensus 329 pl~~g~~G~~Vsls-~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~ 405 (570)
..+.+.+|..+..+ .|+||+|+|||||+||||||.|+ |+++|+++++ .+..||||||| +|++.++
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~----~~~~fEVvfVS--------~D~~~~~ 82 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKD----NAAPFEVVFVS--------SDRDEES 82 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHh----cCCceEEEEEe--------cCCCHHH
Confidence 34567788888887 69999999999999999999999 9999999985 24589999999 5777788
Q ss_pred HHHHHc--CCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhhh
Q 008311 406 FETLQS--SMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKE 483 (570)
Q Consensus 406 F~~~~~--~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e 483 (570)
+++|+. .++|+++|| ..+.++.+.+.|+|++||++++++|+|++|+.+|+.+|..+|. ....+++.+
T Consensus 83 ~~~y~~~~~~~W~~iPf----~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~-------~~~~a~~~e 151 (157)
T KOG2501|consen 83 LDEYMLEHHGDWLAIPF----GDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS-------ADPKALVDE 151 (157)
T ss_pred HHHHHHhcCCCeEEecC----CCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc-------cCHHHHHHH
Confidence 887766 689999999 5567899999999999999999999999999999999999986 456777776
Q ss_pred c
Q 008311 484 E 484 (570)
Q Consensus 484 ~ 484 (570)
|
T Consensus 152 w 152 (157)
T KOG2501|consen 152 W 152 (157)
T ss_pred H
Confidence 3
No 4
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.92 E-value=4.8e-25 Score=206.45 Aligned_cols=124 Identities=21% Similarity=0.406 Sum_probs=101.9
Q ss_pred CCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhh-hccCCCeEEEEEecccCCCCCChhhHHHHHHHHc
Q 008311 335 TKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHL-TRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQS 411 (570)
Q Consensus 335 ~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~-~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~ 411 (570)
+-.++++++|+||+|+|||||+|||||+.|+ |.++|++++++. .+.+++|+||+||. |++.+.++++.+
T Consensus 14 ~~~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~--------D~~~~~~~~f~~ 85 (146)
T cd03008 14 DTEREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSM--------DQSEQQQESFLK 85 (146)
T ss_pred hcccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEEC--------CCCHHHHHHHHH
Confidence 3357788999999999999999999999999 999999997421 00235799999995 444556777777
Q ss_pred CCC--ceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCC
Q 008311 412 SMP--WYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAF 470 (570)
Q Consensus 412 ~MP--W~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aF 470 (570)
+|+ |+.+++. + .....+.+.|++.++|++||||++|+|+.++++..|..+|.+||
T Consensus 86 ~~~~~~~~~p~~---~-~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 86 DMPKKWLFLPFE---D-EFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred HCCCCceeeccc---c-hHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 776 9888773 3 23457899999999999999999999999999999999998775
No 5
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.90 E-value=2.8e-23 Score=188.93 Aligned_cols=127 Identities=28% Similarity=0.436 Sum_probs=106.4
Q ss_pred CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311 329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF 406 (570)
Q Consensus 329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F 406 (570)
.+++|. +++++++++||+|+|+|||+||++|+.++ |+++|+++++ .+.+++|++|++ |++.+.+
T Consensus 2 ~~~~~~--~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~----~~~~v~vi~Vs~--------d~~~~~~ 67 (132)
T cd02964 2 FLLDGE--GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE----EGKNFEIVFVSR--------DRSEESF 67 (132)
T ss_pred ccccCC--ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhh----cCCCeEEEEEec--------CCCHHHH
Confidence 345565 68999999999999999999999999999 9999999974 124799999996 3334556
Q ss_pred HHHHcCC-CceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhh-hcCCCCCC
Q 008311 407 ETLQSSM-PWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWI-WGSNAFPF 472 (570)
Q Consensus 407 ~~~~~~M-PW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~-~G~~aFPF 472 (570)
+.+.+++ +|+.++|. |......+++.|++.++|++++||++|+|+.+++..++.. ||..||||
T Consensus 68 ~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 68 NEYFSEMPPWLAVPFE---DEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred HHHHhcCCCeEeeccC---cHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 6666666 79988872 4334567889999999999999999999999999999987 99999998
No 6
>PF14577 SEO_C: Sieve element occlusion C-terminus
Probab=99.87 E-value=7.7e-23 Score=203.10 Aligned_cols=91 Identities=62% Similarity=1.097 Sum_probs=87.7
Q ss_pred chhHHHHhhhcCccccccccCCCccccccccCCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhh
Q 008311 474 SLREEALWKEETWRLELLVDGIDPLVLDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCG 553 (570)
Q Consensus 474 ~~~~e~L~~e~~w~~~ll~d~~d~~i~~~~~egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~ 553 (570)
++++++||++++|+++|++||+||.|.+|+.||||||||||+|.+|||+||..++++++++++++||+||||+|++|+||
T Consensus 1 ~sree~Lw~e~~W~l~lL~d~Idp~i~~wi~e~kyI~iYGG~D~eWIq~Ft~~a~~va~~a~i~LEm~yvGKsn~~e~v~ 80 (235)
T PF14577_consen 1 KSREESLWKEETWFLELLVDGIDPTILNWIKEGKYIFIYGGEDMEWIQEFTKAARKVAKAADIQLEMVYVGKSNPREQVR 80 (235)
T ss_pred CchHHHhhhhhhHHHHHHHcccCHhHHHHhhCCcEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCChHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccc
Q 008311 554 ESWQPLQLKSL 564 (570)
Q Consensus 554 ~~~~~~~~~~~ 564 (570)
+++.+|....|
T Consensus 81 ~~~~~i~~e~l 91 (235)
T PF14577_consen 81 KIIATITSEKL 91 (235)
T ss_pred HHhhhhhhccc
Confidence 99999987655
No 7
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.79 E-value=6.5e-19 Score=150.31 Aligned_cols=91 Identities=22% Similarity=0.430 Sum_probs=76.8
Q ss_pred CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCC--Cceeeccc
Q 008311 346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSM--PWYTVYHP 421 (570)
Q Consensus 346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~M--PW~aV~fP 421 (570)
||+|+|+|||+||+||+.++ |.++|+++++ +++++||+||+ |++.+.++++.+++ +|+.+++.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-----~~~v~~v~Vs~--------d~~~~~~~~~~~~~~~~~~~~~~~ 67 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-----KDDVEFVFVSL--------DEDEEEWKKFLKKNNFPWYNVPFD 67 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-----TTTEEEEEEE---------SSSHHHHHHHHHTCTTSSEEEETT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEEe--------CCCHHHHHHHHHhcCCCceEEeeC
Confidence 89999999999999999999 9999999973 46899999996 45667787776666 99999973
Q ss_pred cccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311 422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRV 453 (570)
Q Consensus 422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV 453 (570)
......+.+.|++.++|+++|+|++|+|
T Consensus 68 ----~~~~~~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 68 ----DDNNSELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp ----THHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred ----cchHHHHHHHCCCCcCCEEEEECCCCCC
Confidence 3446789999999999999999999987
No 8
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.69 E-value=9.1e-17 Score=144.90 Aligned_cols=108 Identities=16% Similarity=0.126 Sum_probs=82.4
Q ss_pred CCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCC
Q 008311 336 KRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSM 413 (570)
Q Consensus 336 G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~M 413 (570)
|+.+++++++||+|+|+|||+||++|+.++ |+++|+++++ .+++||+|+..+.+ .+.+.+..+++..+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~------~~~~vi~i~~~~~~---~~~~~~~~~~~~~~- 82 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD------DGLVVIGVHSPEFA---FERDLANVKSAVLR- 82 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc------CCeEEEEeccCccc---cccCHHHHHHHHHH-
Confidence 578999999999999999999999999999 9999999963 47999999852111 12233344443333
Q ss_pred CceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccc
Q 008311 414 PWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPN 457 (570)
Q Consensus 414 PW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~n 457 (570)
+.++||.+.|. ...+.+.|++.++|+++|||++|+|+...
T Consensus 83 --~~~~~p~~~D~--~~~~~~~~~v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 83 --YGITYPVANDN--DYATWRAYGNQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred --cCCCCCEEECC--chHHHHHhCCCcCCeEEEECCCCcEEEEE
Confidence 23356666665 35678899999999999999999998753
No 9
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.65 E-value=6.9e-16 Score=135.44 Aligned_cols=105 Identities=13% Similarity=0.173 Sum_probs=77.6
Q ss_pred ccCCCCCeeeccccC-CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311 331 VDGSTKRRVNIEVLR-RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE 407 (570)
Q Consensus 331 ~~g~~G~~Vsls~Lk-GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~ 407 (570)
+.+.+|+.+++++++ ||+|+|+||++||++|+.++ |.+++++++ .++.|+.++ | .+.+..+
T Consensus 5 l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~-------~~~~vi~v~--~-------~~~~~~~ 68 (114)
T cd02967 5 LTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA-------DWLDVVLAS--D-------GEKAEHQ 68 (114)
T ss_pred eecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhc-------CCcEEEEEe--C-------CCHHHHH
Confidence 455788999999998 99999999999999999998 989888763 257788765 2 1222333
Q ss_pred HHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccc
Q 008311 408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPN 457 (570)
Q Consensus 408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~n 457 (570)
++.++++.. .+|.+.+. .+.+.|++.++|++++||++|+|+.++
T Consensus 69 ~~~~~~~~~--~~p~~~~~----~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 69 RFLKKHGLE--AFPYVLSA----ELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred HHHHHhCCC--CCcEEecH----HHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 333333321 13434442 477899999999999999999999875
No 10
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.64 E-value=9.3e-16 Score=140.73 Aligned_cols=104 Identities=17% Similarity=0.212 Sum_probs=83.3
Q ss_pred CCCCeeeccccCCCEEEEEEecC-CCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHH
Q 008311 334 STKRRVNIEVLRRKNVLLLISDL-DISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQ 410 (570)
Q Consensus 334 ~~G~~Vsls~LkGKvVlL~FwAs-WCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~ 410 (570)
.+|+.+++++++||+|+|+||++ |||||+.++ |.++++++++ +++++|+|+..+ +.....|.+.
T Consensus 16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~------~~v~~v~v~~~~------~~~~~~~~~~- 82 (146)
T PF08534_consen 16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKD------KGVDVVGVSSDD------DPPVREFLKK- 82 (146)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT------TTCEEEEEEESS------SHHHHHHHHH-
T ss_pred CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhcc------CceEEEEecccC------CHHHHHHHHh-
Confidence 89999999999999999999999 999999999 9999999863 479999998622 3334444432
Q ss_pred cCCCceeeccccccChHHHHHHHHhCCCC---------CCceEEEECCCCcEEccc
Q 008311 411 SSMPWYTVYHPTLIDRAVIRYVKDVWHFK---------NKPILVVLDPQGRVVSPN 457 (570)
Q Consensus 411 ~~MPW~aV~fP~l~D~~~~~~L~~~y~V~---------~IPtlVVLDpqGkVv~~n 457 (570)
...+ ||.+.|. ...+.+.|++. ++|++++||++|+|+...
T Consensus 83 ~~~~-----~~~~~D~--~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 83 YGIN-----FPVLSDP--DGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp TTTT-----SEEEEET--TSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred hCCC-----ceEEech--HHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 3333 4444563 35688899998 999999999999999763
No 11
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.60 E-value=9.4e-16 Score=143.08 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=75.7
Q ss_pred ccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccC-CCCC-ChhhHHHH
Q 008311 331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDH-FIHW-DDPTQKKF 406 (570)
Q Consensus 331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~-s~~w-~D~~~~~F 406 (570)
+.+.+|+.+++++++||+|+|+|||+||| |+.++ |+++|++++ +.+++||+|++.+. +.+- +.+..+.|
T Consensus 7 l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~------~~~~~vv~v~~~~~~~~~~~~~~~~~~f 79 (152)
T cd00340 7 VKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYK------DRGLVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred EECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhc------CCCEEEEEeccCccccCCCCCHHHHHHH
Confidence 45678999999999999999999999999 99999 999999996 24799999986210 0000 11223444
Q ss_pred HHHHcCCCceeeccccccChHHHH-HHHHhCC--CCCCc-----------eEEEECCCCcEEcc
Q 008311 407 ETLQSSMPWYTVYHPTLIDRAVIR-YVKDVWH--FKNKP-----------ILVVLDPQGRVVSP 456 (570)
Q Consensus 407 ~~~~~~MPW~aV~fP~l~D~~~~~-~L~~~y~--V~~IP-----------tlVVLDpqGkVv~~ 456 (570)
.+-...+ +||.+.|.+... ...+.|+ +.++| ++++||++|+|+.+
T Consensus 80 ~~~~~~~-----~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~ 138 (152)
T cd00340 80 CETNYGV-----TFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKR 138 (152)
T ss_pred HHHhcCC-----CceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEE
Confidence 3311122 344443321111 1233344 34556 89999999999976
No 12
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.59 E-value=8.4e-15 Score=131.55 Aligned_cols=103 Identities=14% Similarity=0.047 Sum_probs=75.3
Q ss_pred CCCC--CeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH
Q 008311 333 GSTK--RRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET 408 (570)
Q Consensus 333 g~~G--~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~ 408 (570)
+.+| +.+++++++||+|+|+|||+|||+|+.++ |.++++++ +++||.|++.+ +.+..++|.+
T Consensus 10 ~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---------~~~vv~v~~~~-----~~~~~~~~~~ 75 (127)
T cd03010 10 ALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---------RVPIYGINYKD-----NPENALAWLA 75 (127)
T ss_pred cccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---------CcEEEEEECCC-----CHHHHHHHHH
Confidence 3445 78999999999999999999999999998 87776542 38999998622 2223333432
Q ss_pred HHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 409 LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 409 ~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
....+|..+. .|. ...+.+.|++.++|++++||++|+++..
T Consensus 76 -~~~~~~~~~~----~D~--~~~~~~~~~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 76 -RHGNPYAAVG----FDP--DGRVGIDLGVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred -hcCCCCceEE----ECC--cchHHHhcCCCCCCeEEEECCCceEEEE
Confidence 1334554332 354 3468888999999999999999999865
No 13
>PLN02412 probable glutathione peroxidase
Probab=99.58 E-value=2.6e-15 Score=142.97 Aligned_cols=117 Identities=15% Similarity=0.218 Sum_probs=78.2
Q ss_pred CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCC-C-CCh-hhH
Q 008311 329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFI-H-WDD-PTQ 403 (570)
Q Consensus 329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~-~-w~D-~~~ 403 (570)
..+.+.+|+++++++++||+|+|+|||+|||+|+.++ |+++|+++++ .+++||+||..+... + -+. +..
T Consensus 12 f~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~------~g~~vvgv~~~~~~~~~~~~~~~~~ 85 (167)
T PLN02412 12 FTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE------QGFEILAFPCNQFLGQEPGSNEEIQ 85 (167)
T ss_pred eEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh------CCcEEEEecccccccCCCCCHHHHH
Confidence 3455789999999999999999999999999999988 9999999973 479999999622100 0 011 112
Q ss_pred HHHHHHHcCCCceeeccccccC--hH------HHHHHHH----hCC--CCCCceEEEECCCCcEEccc
Q 008311 404 KKFETLQSSMPWYTVYHPTLID--RA------VIRYVKD----VWH--FKNKPILVVLDPQGRVVSPN 457 (570)
Q Consensus 404 ~~F~~~~~~MPW~aV~fP~l~D--~~------~~~~L~~----~y~--V~~IPtlVVLDpqGkVv~~n 457 (570)
+.|.+ + +.++||.+.+ .. .-+.+.. .++ +.+.|+++|||++|+|+..-
T Consensus 86 ~~~~~---~---~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~ 147 (167)
T PLN02412 86 QTVCT---R---FKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY 147 (167)
T ss_pred HHHHH---c---cCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence 33322 1 1234444321 11 1111211 122 66789999999999999864
No 14
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.57 E-value=7e-15 Score=144.19 Aligned_cols=115 Identities=10% Similarity=0.146 Sum_probs=76.4
Q ss_pred ccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCC-CCC-ChhhHHHH
Q 008311 331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHF-IHW-DDPTQKKF 406 (570)
Q Consensus 331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s-~~w-~D~~~~~F 406 (570)
+.+.+|+.+++++++||+|+|+|||+|||||+.++ |+++|++++ +.+++||+||..+.. .+. +.++.++|
T Consensus 24 l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~------~~g~~vvgv~~~~~~~~e~d~~e~~~~f 97 (199)
T PTZ00056 24 VKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFN------PLGLEILAFPTSQFLNQEFPNTKDIRKF 97 (199)
T ss_pred EECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHh------cCceEEEEecchhccCCCCCCHHHHHHH
Confidence 45678999999999999999999999999999999 999999996 357999999962100 000 11233444
Q ss_pred HHHHcCCCceeeccccccCh--------HHHHHH----HHhCCCC----CC---ceEEEECCCCcEEccc
Q 008311 407 ETLQSSMPWYTVYHPTLIDR--------AVIRYV----KDVWHFK----NK---PILVVLDPQGRVVSPN 457 (570)
Q Consensus 407 ~~~~~~MPW~aV~fP~l~D~--------~~~~~L----~~~y~V~----~I---PtlVVLDpqGkVv~~n 457 (570)
.+ ...+ +||.+.|. +..+.+ ...|+.. ++ |+++|||++|+|+.+.
T Consensus 98 ~~-~~~~-----~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~ 161 (199)
T PTZ00056 98 ND-KNKI-----KYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYF 161 (199)
T ss_pred HH-HcCC-----CceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEe
Confidence 32 1233 44443221 111222 2334443 23 3799999999999654
No 15
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.57 E-value=2.3e-14 Score=138.26 Aligned_cols=121 Identities=16% Similarity=0.249 Sum_probs=79.3
Q ss_pred CCCCcc--cCCCCCeeeccccCCCEE-EEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccC-C-CCC
Q 008311 326 DLQPLV--DGSTKRRVNIEVLRRKNV-LLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDH-F-IHW 398 (570)
Q Consensus 326 ~~~pl~--~g~~G~~Vsls~LkGKvV-lL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~-s-~~w 398 (570)
...|.| .+.+|+.+++++++||+| ++.|||+|||||+.++ |+++|+++++ .+++||+||..+. + ..+
T Consensus 18 ~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~------~gv~vv~vs~~~~~~~~~~ 91 (183)
T PTZ00256 18 KSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS------QGLEILAFPCNQFMEQEPW 91 (183)
T ss_pred CcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh------CCcEEEEEecccccccCCC
Confidence 334444 578999999999999965 4566999999999999 9999999963 4799999996210 0 011
Q ss_pred ChhhHHHHHHHHcCCCceeeccccccC--hH------HHHHHHH--------hCCCCCCce---EEEECCCCcEEccc
Q 008311 399 DDPTQKKFETLQSSMPWYTVYHPTLID--RA------VIRYVKD--------VWHFKNKPI---LVVLDPQGRVVSPN 457 (570)
Q Consensus 399 ~D~~~~~F~~~~~~MPW~aV~fP~l~D--~~------~~~~L~~--------~y~V~~IPt---lVVLDpqGkVv~~n 457 (570)
+.++...|.. ++ +.++||.+.| .. .-+.+.+ .+++.++|+ ++|||++|+|+.+.
T Consensus 92 ~~~~~~~f~~--~~---~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~ 164 (183)
T PTZ00256 92 DEPEIKEYVQ--KK---FNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYF 164 (183)
T ss_pred CHHHHHHHHH--Hh---cCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEE
Confidence 2233334421 12 2345665532 11 1112222 246789995 69999999999763
No 16
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.56 E-value=1.8e-14 Score=127.67 Aligned_cols=107 Identities=20% Similarity=0.279 Sum_probs=85.0
Q ss_pred CcccCCCCCeeeccccCCCEEEEEEecC-CCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311 329 PLVDGSTKRRVNIEVLRRKNVLLLISDL-DISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK 405 (570)
Q Consensus 329 pl~~g~~G~~Vsls~LkGKvVlL~FwAs-WCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~ 405 (570)
..+.+.+|+.+++++++||+++|+||++ |||+|+.++ |.++|+++++ .+++|++|+. | ..+..+.
T Consensus 8 f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~------~~~~vi~is~-d-----~~~~~~~ 75 (124)
T PF00578_consen 8 FTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD------KGVQVIGIST-D-----DPEEIKQ 75 (124)
T ss_dssp EEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT------TTEEEEEEES-S-----SHHHHHH
T ss_pred cEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhcc------ceEEeeeccc-c-----cccchhh
Confidence 4456788999999999999999999999 999999999 9999999973 4799999996 2 2233455
Q ss_pred HHHHHcCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEc
Q 008311 406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVS 455 (570)
Q Consensus 406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~ 455 (570)
|.+.. .. +||.+.|. ...+.+.|++. ..|+.+|||++|+|+.
T Consensus 76 ~~~~~-~~-----~~~~~~D~--~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 76 FLEEY-GL-----PFPVLSDP--DGELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp HHHHH-TC-----SSEEEEET--TSHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred hhhhh-cc-----ccccccCc--chHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 54432 23 44445564 35688899998 9999999999999975
No 17
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.55 E-value=2e-14 Score=158.75 Aligned_cols=113 Identities=11% Similarity=0.109 Sum_probs=87.7
Q ss_pred CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311 329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF 406 (570)
Q Consensus 329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F 406 (570)
..+.+.+|+.+.++ +||+|+|+|||+||+||+.++ |.++|++++ .++++||.|++.+.+ .+.+.+.|
T Consensus 41 f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k------~~~v~VI~Vs~~~~~---~e~~~~~~ 109 (521)
T PRK14018 41 LKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAK------FSSANLITVASPGFL---HEKKDGDF 109 (521)
T ss_pred eEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhc------cCCeEEEEEeccccc---ccccHHHH
Confidence 34467889999887 999999999999999999999 999999985 246999999852111 23445667
Q ss_pred HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
.++...+.|.. +|.+.|. ...+.+.|+++++|+++|||++|+++..
T Consensus 110 ~~~~~~~~y~~--~pV~~D~--~~~lak~fgV~giPTt~IIDkdGkIV~~ 155 (521)
T PRK14018 110 QKWYAGLDYPK--LPVLTDN--GGTLAQSLNISVYPSWAIIGKDGDVQRI 155 (521)
T ss_pred HHHHHhCCCcc--cceeccc--cHHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence 76666665542 3444564 3568899999999999999999999865
No 18
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.55 E-value=1.2e-14 Score=146.26 Aligned_cols=118 Identities=16% Similarity=0.219 Sum_probs=80.2
Q ss_pred CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCC-CC-CChhhHH
Q 008311 329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHF-IH-WDDPTQK 404 (570)
Q Consensus 329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s-~~-w~D~~~~ 404 (570)
..+.+.+|+.+++++++||+|+|+|||+||++|+.++ |+++|+++++ ++++||+|+..+.. .+ -+.++.+
T Consensus 82 F~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~------~Gv~VIgV~~d~~~~~e~~s~~ei~ 155 (236)
T PLN02399 82 FTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT------QGFEILAFPCNQFGGQEPGSNPEIK 155 (236)
T ss_pred eEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc------CCcEEEEEecccccccCCCCHHHHH
Confidence 3455789999999999999999999999999999999 9999999963 47999999963210 00 0122334
Q ss_pred HHHHHHcCCCceeecccccc--ChHH------HHHHHHhCC------CCCCceEEEECCCCcEEccc
Q 008311 405 KFETLQSSMPWYTVYHPTLI--DRAV------IRYVKDVWH------FKNKPILVVLDPQGRVVSPN 457 (570)
Q Consensus 405 ~F~~~~~~MPW~aV~fP~l~--D~~~------~~~L~~~y~------V~~IPtlVVLDpqGkVv~~n 457 (570)
+|.. .+ +.++||.+. |..+ .+.++..++ +++.|+++|||++|+|+.+.
T Consensus 156 ~f~~--~~---~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~ 217 (236)
T PLN02399 156 QFAC--TR---FKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERY 217 (236)
T ss_pred HHHH--Hh---cCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEE
Confidence 4421 11 234566543 2211 112222222 45679999999999999863
No 19
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.55 E-value=2.5e-14 Score=138.12 Aligned_cols=100 Identities=18% Similarity=0.113 Sum_probs=70.9
Q ss_pred CCeeecccc-CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcC
Q 008311 336 KRRVNIEVL-RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSS 412 (570)
Q Consensus 336 G~~Vsls~L-kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~ 412 (570)
|+.++++++ +||+|+|+|||+||+||+.++ |.++++ ++++||+|++.| +.++.++|.+- ..
T Consensus 57 g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----------~~~~vi~v~~~~-----~~~~~~~~~~~-~~ 120 (185)
T PRK15412 57 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----------QGIRVVGMNYKD-----DRQKAISWLKE-LG 120 (185)
T ss_pred CccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----------cCCEEEEEECCC-----CHHHHHHHHHH-cC
Confidence 466777766 899999999999999999999 876642 258999999521 12233344321 23
Q ss_pred CCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccc
Q 008311 413 MPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPN 457 (570)
Q Consensus 413 MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~n 457 (570)
.+|..+ +.|.. ..+.+.|++.++|++++||++|+|+...
T Consensus 121 ~~~~~~----~~D~~--~~~~~~~gv~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 121 NPYALS----LFDGD--GMLGLDLGVYGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred CCCceE----EEcCC--ccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence 444322 23542 3567889999999999999999998753
No 20
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.55 E-value=3.4e-14 Score=132.57 Aligned_cols=114 Identities=21% Similarity=0.273 Sum_probs=77.3
Q ss_pred ccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecc--cCCCCCChhhHHHH
Q 008311 331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIV--DHFIHWDDPTQKKF 406 (570)
Q Consensus 331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIv--D~s~~w~D~~~~~F 406 (570)
+.+.+|+.+++++++||+|+|+|||+|||+|+.++ |.++|+++++ .+++||+||.. ..+..=+.+..+.|
T Consensus 7 l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~------~~~~v~~i~~~~~~~~~~d~~~~~~~f 80 (153)
T TIGR02540 7 VKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGP------SHFNVLAFPCNQFGESEPDSSKEIESF 80 (153)
T ss_pred eECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh------CCeEEEEEeccccccCCCCCHHHHHHH
Confidence 45678899999999999999999999999999999 9999999973 47999999851 11100012233444
Q ss_pred HHHHcCCCceeeccccccC-----hH---HHHHHHHhCCCCCCce----EEEECCCCcEEccc
Q 008311 407 ETLQSSMPWYTVYHPTLID-----RA---VIRYVKDVWHFKNKPI----LVVLDPQGRVVSPN 457 (570)
Q Consensus 407 ~~~~~~MPW~aV~fP~l~D-----~~---~~~~L~~~y~V~~IPt----lVVLDpqGkVv~~n 457 (570)
.+-.. .++||.+.| .. ..+.... +..++|+ ++|||++|+|+..-
T Consensus 81 ~~~~~-----~~~fp~~~d~~~~~~~~~~~~~~~~~--~~~~~p~~~~~tflID~~G~v~~~~ 136 (153)
T TIGR02540 81 ARRNY-----GVTFPMFSKIKILGSEAEPAFRFLVD--SSKKEPRWNFWKYLVNPEGQVVKFW 136 (153)
T ss_pred HHHhc-----CCCCCccceEecCCCCCCcHHHHHHh--cCCCCCCCccEEEEEcCCCcEEEEE
Confidence 32111 234555433 11 1112211 3346898 99999999998753
No 21
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.54 E-value=3.8e-14 Score=133.24 Aligned_cols=109 Identities=18% Similarity=0.293 Sum_probs=85.9
Q ss_pred CcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311 329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF 406 (570)
Q Consensus 329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F 406 (570)
..+.+.+|+.+++++++||+++|+|||+||++|+.++ |.++++++++ .+++++.|+. |.+.+.+
T Consensus 44 ~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~------~~~~vi~i~~--------d~~~~~~ 109 (173)
T PRK03147 44 FVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE------KGVEIIAVNV--------DETELAV 109 (173)
T ss_pred cEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc------CCeEEEEEEc--------CCCHHHH
Confidence 4456789999999999999999999999999999998 9999999962 4699999986 2233344
Q ss_pred HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
.++.++.+ ++||.+.|. ...+.+.|++.++|+++++|++|+++..
T Consensus 110 ~~~~~~~~---~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 110 KNFVNRYG---LTFPVAIDK--GRQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred HHHHHHhC---CCceEEECC--cchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 44443332 355555564 3578889999999999999999999864
No 22
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.52 E-value=7.9e-14 Score=118.85 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=81.8
Q ss_pred ccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH
Q 008311 331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET 408 (570)
Q Consensus 331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~ 408 (570)
+.+.+|+.+++++++||+++|+||++||++|+..+ |.+++++++ +.++.++.|++ |. . ..+...+
T Consensus 4 ~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~------~~~~~~~~v~~-d~----~--~~~~~~~ 70 (116)
T cd02966 4 LPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYK------DDGVEVVGVNV-DD----D--DPAAVKA 70 (116)
T ss_pred ccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhC------CCCeEEEEEEC-CC----C--CHHHHHH
Confidence 44577899999999999999999999999999998 889988884 24799999986 21 1 1333333
Q ss_pred HHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 409 LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 409 ~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
+....+ .++|.+.|. ...+.+.|++.++|+++|+|++|+++..
T Consensus 71 ~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 71 FLKKYG---ITFPVLLDP--DGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred HHHHcC---CCcceEEcC--cchHHHhcCcCccceEEEECCCCcEEEE
Confidence 333333 234434454 3568999999999999999999999864
No 23
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.52 E-value=6.3e-14 Score=166.68 Aligned_cols=116 Identities=15% Similarity=0.178 Sum_probs=84.3
Q ss_pred CCCcccC----CCCCeeec-cccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCC
Q 008311 327 LQPLVDG----STKRRVNI-EVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWD 399 (570)
Q Consensus 327 ~~pl~~g----~~G~~Vsl-s~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~ 399 (570)
.+|-|.. .+|+++++ ++++||+|+|+|||+||+||+.++ |+++|++++ +++|+||.|+..+.+ .
T Consensus 396 ~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~------~~~~~vvgV~~~~~D---~ 466 (1057)
T PLN02919 396 KVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYK------DQPFTVVGVHSAKFD---N 466 (1057)
T ss_pred cCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcC------CCCeEEEEEeccccc---c
Confidence 3455543 46888988 589999999999999999999999 999999996 347999999852111 1
Q ss_pred hhhHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 400 DPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 400 D~~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
+++.+.++++..+. .+.||.+.|. ...+.+.|++.++|+++|+|++|+++.+
T Consensus 467 ~~~~~~~~~~~~~~---~i~~pvv~D~--~~~~~~~~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 467 EKDLEAIRNAVLRY---NISHPVVNDG--DMYLWRELGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred cccHHHHHHHHHHh---CCCccEEECC--chHHHHhcCCCccceEEEECCCCeEEEE
Confidence 22334444333221 2334444454 3467888999999999999999999865
No 24
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.52 E-value=1e-13 Score=131.31 Aligned_cols=117 Identities=14% Similarity=0.141 Sum_probs=87.1
Q ss_pred cccCCCCCeeecccc-CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311 330 LVDGSTKRRVNIEVL-RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF 406 (570)
Q Consensus 330 l~~g~~G~~Vsls~L-kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F 406 (570)
.+.+.+|+.++++++ +||+|+|+||++|||+|..++ |.++++++++ .+++||.|++.+....+. .+.+.+
T Consensus 8 ~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~------~~v~~v~is~d~~~~~~~-d~~~~~ 80 (171)
T cd02969 8 SLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA------KGVAVVAINSNDIEAYPE-DSPENM 80 (171)
T ss_pred cccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh------CCeEEEEEecCccccccc-cCHHHH
Confidence 346678899999998 999999999999999999988 9999999962 479999999622100000 134455
Q ss_pred HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcccc
Q 008311 407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNA 458 (570)
Q Consensus 407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na 458 (570)
+++.+... ++||.+.|.. +.+.+.|++.++|.++|||++|+|+...+
T Consensus 81 ~~~~~~~~---~~~~~l~D~~--~~~~~~~~v~~~P~~~lid~~G~v~~~~~ 127 (171)
T cd02969 81 KAKAKEHG---YPFPYLLDET--QEVAKAYGAACTPDFFLFDPDGKLVYRGR 127 (171)
T ss_pred HHHHHHCC---CCceEEECCc--hHHHHHcCCCcCCcEEEECCCCeEEEeec
Confidence 55443322 3455556653 46888999999999999999999986544
No 25
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.50 E-value=1.1e-13 Score=125.78 Aligned_cols=118 Identities=16% Similarity=0.221 Sum_probs=83.5
Q ss_pred CcccCCCCCeeeccccCCCEEEEEEecCCCHH-hHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311 329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQ-EELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK 405 (570)
Q Consensus 329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpP-Cr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~ 405 (570)
..+.+.+|+.+++++++||+++|+||++||++ |..++ |.++|++++++ +.++++||+|++ |...+ +.+..++
T Consensus 5 f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~---~~~~v~~v~vs~-d~~~d-~~~~~~~ 79 (142)
T cd02968 5 FTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGAD---GGDDVQVVFISV-DPERD-TPEVLKA 79 (142)
T ss_pred eEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHh---hcCceEEEEEEE-CCCCC-CHHHHHH
Confidence 34567789999999999999999999999998 99999 99999999741 114699999997 31100 1122334
Q ss_pred HHHHHcCCCceeeccccccChHHHHHHHHhCCCCCC--------------ceEEEECCCCcEEcc
Q 008311 406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNK--------------PILVVLDPQGRVVSP 456 (570)
Q Consensus 406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~I--------------PtlVVLDpqGkVv~~ 456 (570)
|.+.. ..+|..+..+ .+....+.+.||+... |.++||||+|+|+..
T Consensus 80 ~~~~~-~~~~~~l~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 80 YAKAF-GPGWIGLTGT----PEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred HHHHh-CCCcEEEECC----HHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 43321 2466655532 2234678888987544 569999999999864
No 26
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.49 E-value=1.9e-13 Score=132.64 Aligned_cols=105 Identities=13% Similarity=0.143 Sum_probs=75.6
Q ss_pred CCcccCCCCCeeecc--ccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhH
Q 008311 328 QPLVDGSTKRRVNIE--VLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQ 403 (570)
Q Consensus 328 ~pl~~g~~G~~Vsls--~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~ 403 (570)
...+.+.+|+.++++ .++||+|+|+|||+|||+|+.++ +.+++++. ++++++|+. | ++++.
T Consensus 54 ~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---------~~~vv~Is~-~-----~~~~~ 118 (189)
T TIGR02661 54 IFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---------ETDVVMISD-G-----TPAEH 118 (189)
T ss_pred CcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---------CCcEEEEeC-C-----CHHHH
Confidence 344567789999994 57999999999999999999999 88887543 467899983 2 23344
Q ss_pred HHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 404 KKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 404 ~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
++|.+- ..+ ++|.+.. ...+.+.|++.++|+.++||++|+|+..
T Consensus 119 ~~~~~~-~~~-----~~~~~~~---~~~i~~~y~v~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 119 RRFLKD-HEL-----GGERYVV---SAEIGMAFQVGKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred HHHHHh-cCC-----Ccceeec---hhHHHHhccCCccceEEEECCCCeEEEc
Confidence 444331 122 2221111 2357789999999999999999999874
No 27
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.48 E-value=1.7e-13 Score=130.54 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=81.7
Q ss_pred CCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHH-
Q 008311 335 TKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQ- 410 (570)
Q Consensus 335 ~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~- 410 (570)
+|+.+++++++||+|+|+|| ++||++|..++ |.++|+++++ .++.||+||+ | .....+.|.+..
T Consensus 18 ~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~------~~v~vv~Is~-d-----~~~~~~~~~~~~~ 85 (173)
T cd03015 18 EFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK------LNAEVLGVST-D-----SHFSHLAWRNTPR 85 (173)
T ss_pred CceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEec-C-----CHHHHHHHHHhhh
Confidence 34799999999999999999 89999999999 9999999963 4799999996 3 122334565432
Q ss_pred cCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEccc
Q 008311 411 SSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSPN 457 (570)
Q Consensus 411 ~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~n 457 (570)
..+-+..++||.+.|. ...+.+.|++. .+|+++|||++|+|+..+
T Consensus 86 ~~~~~~~~~f~~l~D~--~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 86 KEGGLGKINFPLLADP--KKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred hhCCccCcceeEEECC--chhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 1111223345555565 35677889986 688999999999999875
No 28
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.47 E-value=2e-13 Score=123.78 Aligned_cols=107 Identities=19% Similarity=0.251 Sum_probs=82.9
Q ss_pred cccCCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311 330 LVDGSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF 406 (570)
Q Consensus 330 l~~g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F 406 (570)
.+.+.+|+.+++++++||+++|+|| ++|||+|...+ |.++++++++ ++++||+|++ | +.+...+|
T Consensus 7 ~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~------~~~~vv~is~-d-----~~~~~~~~ 74 (140)
T cd03017 7 TLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA------LGAVVIGVSP-D-----SVESHAKF 74 (140)
T ss_pred cccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEcC-C-----CHHHHHHH
Confidence 3456789999999999999999999 58999999998 9999999963 4799999995 3 23333444
Q ss_pred HHHHcCCCceeeccccccChHHHHHHHHhCCCCCC---------ceEEEECCCCcEEcc
Q 008311 407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNK---------PILVVLDPQGRVVSP 456 (570)
Q Consensus 407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~I---------PtlVVLDpqGkVv~~ 456 (570)
.+ +.+ ++||.+.|.. +.+.+.|++... |+++|||++|+|+..
T Consensus 75 ~~---~~~---~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~ 125 (140)
T cd03017 75 AE---KYG---LPFPLLSDPD--GKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV 125 (140)
T ss_pred HH---HhC---CCceEEECCc--cHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence 33 222 2455555653 468889999988 999999999999875
No 29
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.47 E-value=2e-13 Score=129.92 Aligned_cols=108 Identities=19% Similarity=0.101 Sum_probs=82.2
Q ss_pred ccCCCCCeeeccccCCCEEEEEEecCC-CHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311 331 VDGSTKRRVNIEVLRRKNVLLLISDLD-ISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE 407 (570)
Q Consensus 331 ~~g~~G~~Vsls~LkGKvVlL~FwAsW-CpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~ 407 (570)
+.+.+|+.+++++++||+|+|+||++| ||||..++ |+++|++++ +++||.||. | +....++|.
T Consensus 29 l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--------~~~vv~vs~-D-----~~~~~~~f~ 94 (167)
T PRK00522 29 LVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--------NTVVLCISA-D-----LPFAQKRFC 94 (167)
T ss_pred EEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--------CcEEEEEeC-C-----CHHHHHHHH
Confidence 456789999999999999999999999 99999999 999888762 589999995 3 223445565
Q ss_pred HHHcCCCceeeccccccChHHHHHHHHhCCCCCCc---------eEEEECCCCcEEcccc
Q 008311 408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKP---------ILVVLDPQGRVVSPNA 458 (570)
Q Consensus 408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IP---------tlVVLDpqGkVv~~na 458 (570)
+. ..++ .+|.+.|.. .+.+.+.||+.+.| +++|||++|+|+....
T Consensus 95 ~~-~~~~----~~~~lsD~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 95 GA-EGLE----NVITLSDFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred Hh-CCCC----CceEeecCC-ccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 42 1222 134444532 34678899998887 9999999999997754
No 30
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.46 E-value=1.7e-13 Score=132.85 Aligned_cols=114 Identities=15% Similarity=0.094 Sum_probs=85.0
Q ss_pred CCccc--C-CCCC--eeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCC
Q 008311 328 QPLVD--G-STKR--RVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWD 399 (570)
Q Consensus 328 ~pl~~--g-~~G~--~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~ 399 (570)
.|.|. + .+|+ .+++++++||+|+|+|| |+||++|..++ |.++|+++++ .+++||+||. | .
T Consensus 8 aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~------~gv~vi~VS~-D-----~ 75 (187)
T TIGR03137 8 IKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKK------LGVEVYSVST-D-----T 75 (187)
T ss_pred CCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh------cCCcEEEEeC-C-----C
Confidence 45543 3 3465 68888999999999999 99999999999 9999999963 4799999996 3 1
Q ss_pred hhhHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEccc
Q 008311 400 DPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSPN 457 (570)
Q Consensus 400 D~~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~n 457 (570)
....+.|.+... ....++||.+.|. ...+.+.|++. ..|+++|||++|+|+...
T Consensus 76 ~~~~~~~~~~~~--~~~~l~fpllsD~--~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 76 HFVHKAWHDTSE--AIGKITYPMLGDP--TGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred HHHHHHHHhhhh--hccCcceeEEECC--ccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence 233455543221 1124567777775 35788899986 469999999999998753
No 31
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.45 E-value=3.4e-13 Score=128.73 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=71.5
Q ss_pred ccCCCCC--eeecccc-CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311 331 VDGSTKR--RVNIEVL-RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK 405 (570)
Q Consensus 331 ~~g~~G~--~Vsls~L-kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~ 405 (570)
+.+.+|+ .++++.+ +||+|+|+|||+|||+|+.++ |.++++ ++++|++|+..+ ..++..+
T Consensus 45 l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----------~~~~vi~V~~~~-----~~~~~~~ 109 (173)
T TIGR00385 45 LAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----------DGLPIVGVDYKD-----QSQNALK 109 (173)
T ss_pred ccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----------cCCEEEEEECCC-----ChHHHHH
Confidence 3445565 4555565 799999999999999999998 665542 258999998621 1222233
Q ss_pred HHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
|-+- ..+||..+. .|.. ..+.+.|++.++|++++||++|+|+..
T Consensus 110 ~~~~-~~~~f~~v~----~D~~--~~~~~~~~v~~~P~~~~id~~G~i~~~ 153 (173)
T TIGR00385 110 FLKE-LGNPYQAIL----IDPN--GKLGLDLGVYGAPETFLVDGNGVILYR 153 (173)
T ss_pred HHHH-cCCCCceEE----ECCC--CchHHhcCCeeCCeEEEEcCCceEEEE
Confidence 4321 234543222 2542 457888999999999999999999875
No 32
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.45 E-value=4.3e-13 Score=122.88 Aligned_cols=109 Identities=14% Similarity=0.012 Sum_probs=80.5
Q ss_pred CcccCCCCCeeeccccCCCEEEEEEecCC-CHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311 329 PLVDGSTKRRVNIEVLRRKNVLLLISDLD-ISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK 405 (570)
Q Consensus 329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsW-CpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~ 405 (570)
..+.+.+|+.+++++++||+|+|+||++| ||+|+.++ |.++|++++ +++||.|++ | .....+.
T Consensus 9 f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--------~~~vi~Is~-d-----~~~~~~~ 74 (143)
T cd03014 9 FTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--------NTVVLTISA-D-----LPFAQKR 74 (143)
T ss_pred cEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--------CCEEEEEEC-C-----CHHHHHH
Confidence 33467788999999999999999999999 69999999 999998862 589999996 2 2233455
Q ss_pred HHHHHcCCCceeeccccccChHHHHHHHHhCCCCC------CceEEEECCCCcEEccc
Q 008311 406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKN------KPILVVLDPQGRVVSPN 457 (570)
Q Consensus 406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~------IPtlVVLDpqGkVv~~n 457 (570)
|.+ ++... .||.+.|.. ...+.+.|++.. .|+++|||++|+|+...
T Consensus 75 ~~~---~~~~~--~~~~l~D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 75 WCG---AEGVD--NVTTLSDFR-DHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred HHH---hcCCC--CceEeecCc-ccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence 543 22211 234344532 246778888863 79999999999998764
No 33
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.44 E-value=2.3e-13 Score=131.96 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=76.7
Q ss_pred CCCcccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311 327 LQPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK 404 (570)
Q Consensus 327 ~~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~ 404 (570)
+.+.|.-.+|+.+++++++ +|+|||+|||||+.|+ |+++++++ +++|+.|++ |. +.
T Consensus 54 ~~~~f~l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---------g~~Vi~Vs~-D~-------~~- 111 (181)
T PRK13728 54 APRWFRLSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---------GFSVFPYTL-DG-------QG- 111 (181)
T ss_pred CCCccCCCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---------CCEEEEEEe-CC-------CC-
Confidence 4567777899999999998 7789999999999999 99999987 389999996 31 10
Q ss_pred HHHHHHcCCCceeeccccccChHHHHHHHHhCCC--CCCceEEEECCCCcEEccccch
Q 008311 405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHF--KNKPILVVLDPQGRVVSPNALH 460 (570)
Q Consensus 405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V--~~IPtlVVLDpqGkVv~~na~~ 460 (570)
...||.++|.. ...+.+.|++ .++|+++++|++|+++......
T Consensus 112 ------------~~~fPv~~dd~-~~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G 156 (181)
T PRK13728 112 ------------DTAFPEALPAP-PDVMQTFFPNIPVATPTTFLVNVNTLEALPLLQG 156 (181)
T ss_pred ------------CCCCceEecCc-hhHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEEC
Confidence 03567766421 2456778995 6999999999999997543333
No 34
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.43 E-value=6e-13 Score=122.17 Aligned_cols=111 Identities=15% Similarity=0.101 Sum_probs=81.6
Q ss_pred CcccCCCCCeeeccccCC-CEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311 329 PLVDGSTKRRVNIEVLRR-KNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK 404 (570)
Q Consensus 329 pl~~g~~G~~Vsls~LkG-KvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~ 404 (570)
..+.+.+|+.+++++++| |+++|+|| ++||++|...+ |+++|+++++ .++.||+|+. | ..+..+
T Consensus 10 ~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~------~~v~vi~vs~-d-----~~~~~~ 77 (149)
T cd03018 10 FELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA------AGAEVLGISV-D-----SPFSLR 77 (149)
T ss_pred cEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh------CCCEEEEecC-C-----CHHHHH
Confidence 345667899999999999 99888887 99999999999 9999999963 4799999995 2 223344
Q ss_pred HHHHHHcCCCceeeccccccChHHHHHHHHhCCCC----CCc--eEEEECCCCcEEccc
Q 008311 405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK----NKP--ILVVLDPQGRVVSPN 457 (570)
Q Consensus 405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~----~IP--tlVVLDpqGkVv~~n 457 (570)
+|.+. ...+ ||.+.|......+.+.|++. ++| ++++||++|+|+...
T Consensus 78 ~~~~~-~~~~-----~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~ 130 (149)
T cd03018 78 AWAEE-NGLT-----FPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAW 130 (149)
T ss_pred HHHHh-cCCC-----ceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEE
Confidence 45432 2333 44444642125677889887 444 899999999998763
No 35
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.42 E-value=6e-13 Score=129.66 Aligned_cols=111 Identities=12% Similarity=0.074 Sum_probs=86.5
Q ss_pred ccCCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311 331 VDGSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE 407 (570)
Q Consensus 331 ~~g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~ 407 (570)
+.+.+...+++++++||+|+|+|| +.|||+|..++ |.+.|+++++ .+++|++||. | +....++|.
T Consensus 16 ~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~------~g~~vigIS~-D-----~~~~~~a~~ 83 (187)
T PRK10382 16 FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK------LGVDVYSVST-D-----THFTHKAWH 83 (187)
T ss_pred EeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh------CCCEEEEEeC-C-----CHHHHHHHH
Confidence 333455778889999999999999 99999999999 9999999963 4799999996 3 233456665
Q ss_pred HHHcCCCceeeccccccChHHHHHHHHhCCC----CCC--ceEEEECCCCcEEccc
Q 008311 408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHF----KNK--PILVVLDPQGRVVSPN 457 (570)
Q Consensus 408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V----~~I--PtlVVLDpqGkVv~~n 457 (570)
+-...+ ..++||.+.|. ...+.+.||+ .++ |.++|||++|+|+...
T Consensus 84 ~~~~~~--~~l~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~ 135 (187)
T PRK10382 84 SSSETI--AKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE 135 (187)
T ss_pred Hhhccc--cCCceeEEEcC--chHHHHHcCCCcccCCceeeEEEEECCCCEEEEEE
Confidence 432222 35678877775 4689999998 467 9999999999998763
No 36
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.42 E-value=1e-12 Score=119.75 Aligned_cols=107 Identities=14% Similarity=0.180 Sum_probs=78.7
Q ss_pred cccCCCCCeeeccccC-CC-EEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311 330 LVDGSTKRRVNIEVLR-RK-NVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK 405 (570)
Q Consensus 330 l~~g~~G~~Vsls~Lk-GK-vVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~ 405 (570)
.+.+.+|+.+++++++ || +|+++||++|||+|+.++ |.++|+++++ .+++||.|+. | .......
T Consensus 6 ~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~------~~v~vv~V~~-~-----~~~~~~~ 73 (149)
T cd02970 6 ELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDA------LGVELVAVGP-E-----SPEKLEA 73 (149)
T ss_pred cccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh------cCeEEEEEeC-C-----CHHHHHH
Confidence 3456788999999875 34 566667899999999999 9999999963 4799999995 2 1222223
Q ss_pred HHHHHcCCCceeeccccccChHHHHHHHHhCCCC-----------------------------CCceEEEECCCCcEEcc
Q 008311 406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-----------------------------NKPILVVLDPQGRVVSP 456 (570)
Q Consensus 406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-----------------------------~IPtlVVLDpqGkVv~~ 456 (570)
|.+ .. .++||.+.|.. ..+.+.|++. .+|.++|||++|+|+..
T Consensus 74 ~~~---~~---~~~~p~~~D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~ 145 (149)
T cd02970 74 FDK---GK---FLPFPVYADPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFA 145 (149)
T ss_pred HHH---hc---CCCCeEEECCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEE
Confidence 332 22 23566667763 5678889984 79999999999999864
No 37
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.42 E-value=1.2e-12 Score=121.63 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=80.6
Q ss_pred CcccCCCCCeeeccccCCCEEEEEEecC-CCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311 329 PLVDGSTKRRVNIEVLRRKNVLLLISDL-DISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK 405 (570)
Q Consensus 329 pl~~g~~G~~Vsls~LkGKvVlL~FwAs-WCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~ 405 (570)
..+.+.+|+.+++++++||+++|+||++ ||++|+.++ |.++++++++ .+++||+|++ | +.+..++
T Consensus 13 f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~------~~v~vi~Is~-d-----~~~~~~~ 80 (154)
T PRK09437 13 FSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK------AGVVVLGIST-D-----KPEKLSR 80 (154)
T ss_pred cEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEcC-C-----CHHHHHH
Confidence 3355788999999999999999999997 577899998 9999999973 4799999996 2 2333344
Q ss_pred HHHHHcCCCceeeccccccChHHHHHHHHhCCCCCC------------ceEEEECCCCcEEcc
Q 008311 406 FETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNK------------PILVVLDPQGRVVSP 456 (570)
Q Consensus 406 F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~I------------PtlVVLDpqGkVv~~ 456 (570)
|.+. ...+| |.+.|.. ..+.+.|++.+. |+++|||++|+|+..
T Consensus 81 ~~~~-~~~~~-----~~l~D~~--~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 81 FAEK-ELLNF-----TLLSDED--HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred HHHH-hCCCC-----eEEECCC--chHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 4332 23344 4444542 457788988654 778999999999875
No 38
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.41 E-value=1.1e-12 Score=118.80 Aligned_cols=109 Identities=14% Similarity=0.191 Sum_probs=82.7
Q ss_pred cccCCCCCeeeccccCCCEEEEEEe-cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311 330 LVDGSTKRRVNIEVLRRKNVLLLIS-DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF 406 (570)
Q Consensus 330 l~~g~~G~~Vsls~LkGKvVlL~Fw-AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F 406 (570)
.+.+.+|+.+++++++||+++|+|| ++||++|...+ |.++|+++++ .+++||+|+. | +....++|
T Consensus 6 ~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~------~~~~~i~is~-d-----~~~~~~~~ 73 (140)
T cd02971 6 TLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK------GGAEVLGVSV-D-----SPFSHKAW 73 (140)
T ss_pred eeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHHHHHHH
Confidence 4556789999999999999999999 78999999999 9999999963 4799999995 2 22233444
Q ss_pred HHHHcCCCceeeccccccChHHHHHHHHhCCCCCCc---------eEEEECCCCcEEccc
Q 008311 407 ETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKP---------ILVVLDPQGRVVSPN 457 (570)
Q Consensus 407 ~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IP---------tlVVLDpqGkVv~~n 457 (570)
.+.....+ ||.+.|.. ..+.+.|++...| +.+|||++|+|+...
T Consensus 74 ~~~~~~~~-----~~~l~D~~--~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~ 126 (140)
T cd02971 74 AEKEGGLN-----FPLLSDPD--GEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE 126 (140)
T ss_pred HhcccCCC-----ceEEECCC--hHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence 43221333 44445653 4688889988766 899999999999763
No 39
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.41 E-value=4e-13 Score=130.64 Aligned_cols=103 Identities=18% Similarity=0.254 Sum_probs=74.5
Q ss_pred CCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEE------EEEecccCCCCCChhhHHH
Q 008311 334 STKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEV------VWIPIVDHFIHWDDPTQKK 405 (570)
Q Consensus 334 ~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEI------V~IsIvD~s~~w~D~~~~~ 405 (570)
.+.+.++.++|+||+++|+|||+||+|||.+. |.++ ++ ++|.+ +.|+..|. -.....
T Consensus 47 ~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~------~~~~~~~y~~t~~IN~dd~-----~~~~~~ 111 (184)
T TIGR01626 47 TVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KA------AKFPPVKYQTTTIINADDA-----IVGTGM 111 (184)
T ss_pred ccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HH------cCCCcccccceEEEECccc-----hhhHHH
Confidence 35567888999999999999999999999999 7777 31 35888 99996221 011223
Q ss_pred H-H----HHHcCCCceeeccccccChHHHHHHHHhCCCCCCceE-EEECCCCcEEccc
Q 008311 406 F-E----TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPIL-VVLDPQGRVVSPN 457 (570)
Q Consensus 406 F-~----~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtl-VVLDpqGkVv~~n 457 (570)
| + +.....||.. .++|.. ..+...|++.++|++ +|||++|+|+...
T Consensus 112 fVk~fie~~~~~~P~~~----vllD~~--g~v~~~~gv~~~P~T~fVIDk~GkVv~~~ 163 (184)
T TIGR01626 112 FVKSSAKKGKKENPWSQ----VVLDDK--GAVKNAWQLNSEDSAIIVLDKTGKVKFVK 163 (184)
T ss_pred HHHHHHHHhcccCCcce----EEECCc--chHHHhcCCCCCCceEEEECCCCcEEEEE
Confidence 3 2 2234556642 445753 457789999999998 8999999998753
No 40
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.40 E-value=9.8e-13 Score=116.94 Aligned_cols=102 Identities=21% Similarity=0.307 Sum_probs=74.2
Q ss_pred cccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311 330 LVDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE 407 (570)
Q Consensus 330 l~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~ 407 (570)
.+...+|+.++++.++||+++|+||++||++|+.++ |.+++++ ++++.|++ |.. +.+..+.|.
T Consensus 4 ~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----------~~~i~i~~-~~~---~~~~~~~~~ 68 (123)
T cd03011 4 TATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----------YPVVSVAL-RSG---DDGAVARFM 68 (123)
T ss_pred eeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----------CCEEEEEc-cCC---CHHHHHHHH
Confidence 345678899999999999999999999999999998 8888754 45788885 210 122333443
Q ss_pred HHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311 408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS 455 (570)
Q Consensus 408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~ 455 (570)
+. ..++ ||.+.|. ...+.+.|++.++|+++++|++| ++.
T Consensus 69 ~~-~~~~-----~~~~~d~--~~~~~~~~~i~~~P~~~vid~~g-i~~ 107 (123)
T cd03011 69 QK-KGYG-----FPVINDP--DGVISARWGVSVTPAIVIVDPGG-IVF 107 (123)
T ss_pred HH-cCCC-----ccEEECC--CcHHHHhCCCCcccEEEEEcCCC-eEE
Confidence 32 2234 4444454 24688899999999999999999 654
No 41
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.37 E-value=2.5e-12 Score=121.65 Aligned_cols=86 Identities=12% Similarity=0.138 Sum_probs=59.0
Q ss_pred CCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCC
Q 008311 336 KRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSM 413 (570)
Q Consensus 336 G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~M 413 (570)
|+.++++ ++++|+|||+|||||+.++ |+++|+++ +++|++|++ | +...+ .
T Consensus 44 G~~~~l~----~~~lvnFWAsWCppCr~e~P~L~~l~~~~---------~~~Vi~Vs~-d------~~~~~-------~- 95 (153)
T TIGR02738 44 GRHANQD----DYALVFFYQSTCPYCHQFAPVLKRFSQQF---------GLPVYAFSL-D------GQGLT-------G- 95 (153)
T ss_pred chhhhcC----CCEEEEEECCCChhHHHHHHHHHHHHHHc---------CCcEEEEEe-C------CCccc-------c-
Confidence 5666654 4459999999999999999 99999876 378999996 2 11111 1
Q ss_pred CceeeccccccChHHHHHHHHhC---CCCCCceEEEECCCCcEEcc
Q 008311 414 PWYTVYHPTLIDRAVIRYVKDVW---HFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 414 PW~aV~fP~l~D~~~~~~L~~~y---~V~~IPtlVVLDpqGkVv~~ 456 (570)
||..++... ..+...| ++.++|++++||++|+++..
T Consensus 96 ------fp~~~~~~~-~~~~~~~~~~~v~~iPTt~LID~~G~~i~~ 134 (153)
T TIGR02738 96 ------FPDPLPATP-EVMQTFFPNPRPVVTPATFLVNVNTRKAYP 134 (153)
T ss_pred ------cccccCCch-HHHHHHhccCCCCCCCeEEEEeCCCCEEEE
Confidence 222222111 2234455 88999999999999987654
No 42
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.35 E-value=2.8e-12 Score=126.06 Aligned_cols=109 Identities=12% Similarity=0.129 Sum_probs=80.7
Q ss_pred cCCCCCeeeccccCCCEEEE-EEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH-
Q 008311 332 DGSTKRRVNIEVLRRKNVLL-LISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE- 407 (570)
Q Consensus 332 ~g~~G~~Vsls~LkGKvVlL-~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~- 407 (570)
.+..| .+++++++||+|+| +||++|||+|..++ |.+.|+++++ .+++||+||+ | +......|.
T Consensus 14 ~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~------~~~~vi~vS~-D-----~~~~~~~w~~ 80 (202)
T PRK13190 14 NTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK------LGVELVGLSV-D-----SIYSHIAWLR 80 (202)
T ss_pred ecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHHHHHHHHH
Confidence 34455 69999999997766 69999999999999 9999999973 4799999996 2 122333443
Q ss_pred HHHcCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEcc
Q 008311 408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSP 456 (570)
Q Consensus 408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~ 456 (570)
.+..+.. ..++||.+.|. .+.+.+.||+. .+|.++||||+|+|...
T Consensus 81 ~~~~~~g-~~~~fPll~D~--~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~ 132 (202)
T PRK13190 81 DIEERFG-IKIPFPVIADI--DKELAREYNLIDENSGATVRGVFIIDPNQIVRWM 132 (202)
T ss_pred hHHHhcC-CCceEEEEECC--ChHHHHHcCCccccCCcEEeEEEEECCCCEEEEE
Confidence 2222221 12567777776 35788999984 58999999999999854
No 43
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.35 E-value=3e-12 Score=127.28 Aligned_cols=112 Identities=13% Similarity=0.044 Sum_probs=86.2
Q ss_pred ccCCCCCeeeccccCCCE-EEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311 331 VDGSTKRRVNIEVLRRKN-VLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE 407 (570)
Q Consensus 331 ~~g~~G~~Vsls~LkGKv-VlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~ 407 (570)
+.+.+|+.+.+++++||+ |+++|||.|||+|..++ |.++|+++++ .+++||+||+ | +......|.
T Consensus 13 l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~------~gv~vigIS~-D-----~~~~~~~w~ 80 (215)
T PRK13599 13 VVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKE------LNTELIGLSV-D-----QVFSHIKWV 80 (215)
T ss_pred eECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHHHHHHHH
Confidence 455688887778999997 47899999999999999 9999999973 4799999996 3 233455665
Q ss_pred HHHcCCCceeeccccccChHHHHHHHHhCCCC-------CCceEEEECCCCcEEcc
Q 008311 408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-------NKPILVVLDPQGRVVSP 456 (570)
Q Consensus 408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-------~IPtlVVLDpqGkVv~~ 456 (570)
++.+++-=..++||.+.|.. +.+.+.||+. .+|+++||||+|+|+..
T Consensus 81 ~~i~~~~~~~i~fPil~D~~--~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 81 EWIKDNTNIAIPFPVIADDL--GKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred HhHHHhcCCCCceeEEECCC--chHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 54332211356788887753 4688899973 68999999999999876
No 44
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.33 E-value=7.3e-13 Score=125.04 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=57.1
Q ss_pred ccccCCeEEEEEecCC-CchHHHHHHHHHHHHhh---CCCCEEEEEEecCCchhhhhhcccc--cccccccc
Q 008311 501 DWIKEGKYIFLYGGDD-VEWVRKFTTAARSVANT---ARIPLEMVYVGKSTKRDKCGESWQP--LQLKSLVT 566 (570)
Q Consensus 501 ~~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~---~~~~fEiv~Vs~d~~~e~~~~~~~~--~~~~~~~~ 566 (570)
...++||.|++||||+ |+|||+|||.|+++|++ .+.+|||||||+|++++++..+++. ++|.-+++
T Consensus 28 ~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf 99 (157)
T KOG2501|consen 28 SEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPF 99 (157)
T ss_pred hHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecC
Confidence 3468999999999999 99999999999999964 5668999999999999999999984 55555544
No 45
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.31 E-value=7.9e-12 Score=127.73 Aligned_cols=140 Identities=14% Similarity=0.063 Sum_probs=95.2
Q ss_pred HHHHhhhhcchhhHHHHHHHhhccCCCCCccc--C-CCC--Ceeecccc-CCCEEEEEEe-cCCCHHhHHHH--HHHHHH
Q 008311 301 MLVKLFDSIHIDNMKVLKALIYAKDDLQPLVD--G-STK--RRVNIEVL-RRKNVLLLIS-DLDISQEELSI--LEQIYN 371 (570)
Q Consensus 301 ~l~~lf~~~~~D~~~~Lk~LI~~k~~~~pl~~--g-~~G--~~Vsls~L-kGKvVlL~Fw-AsWCpPCr~e~--L~~iY~ 371 (570)
+..+.|.+. .+.+.....+.-+. ..|.|. + .+| +.++++++ +||+|+|+|| |.|||+|..++ |.+.|+
T Consensus 50 ~~~~~~~~~-~~~~~~~~~~~vGd--~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ 126 (261)
T PTZ00137 50 NGVRNYSTS-EGLCNTVTSSLVGK--LMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLK 126 (261)
T ss_pred HHHHhccCC-cccccccccccCCC--CCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 555666663 33333333333333 344443 2 234 46899997 8988777777 89999999999 999999
Q ss_pred HHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH-HHcCCCceeeccccccChHHHHHHHHhCCCC-----CCceEE
Q 008311 372 ESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET-LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-----NKPILV 445 (570)
Q Consensus 372 elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~-~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-----~IPtlV 445 (570)
++++ .+++|++||+ | +....+.|.+ ...+.--..++||.+.|. ...+.+.||+. .+|.++
T Consensus 127 ef~~------~gv~VigIS~-D-----s~~~h~aw~~~~~~~~g~~~l~fPlLsD~--~~~iakayGv~~~~g~a~R~tF 192 (261)
T PTZ00137 127 EFEE------RGVKVLGVSV-D-----SPFSHKAWKELDVRQGGVSPLKFPLFSDI--SREVSKSFGLLRDEGFSHRASV 192 (261)
T ss_pred HHHH------CCCEEEEEEC-C-----CHHHHHHHHhhhhhhccccCcceEEEEcC--ChHHHHHcCCCCcCCceecEEE
Confidence 9973 4799999996 3 1224456654 222222235667777775 36789999985 589999
Q ss_pred EECCCCcEEccc
Q 008311 446 VLDPQGRVVSPN 457 (570)
Q Consensus 446 VLDpqGkVv~~n 457 (570)
|||++|+|+...
T Consensus 193 IID~dG~I~~~~ 204 (261)
T PTZ00137 193 LVDKAGVVKHVA 204 (261)
T ss_pred EECCCCEEEEEE
Confidence 999999998753
No 46
>PRK15000 peroxidase; Provisional
Probab=99.31 E-value=9.7e-12 Score=122.25 Aligned_cols=104 Identities=14% Similarity=0.119 Sum_probs=77.5
Q ss_pred eecccc-CCCEEEEEEecC-CCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH-HHcCC
Q 008311 339 VNIEVL-RRKNVLLLISDL-DISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET-LQSSM 413 (570)
Q Consensus 339 Vsls~L-kGKvVlL~FwAs-WCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~-~~~~M 413 (570)
.+++++ +||+|+|+||+. ||++|..++ |.+.|+++++ .+++||.||+ | +....+.|.+ +....
T Consensus 26 ~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~------~g~~vigvS~-D-----~~~~~~~w~~~~~~~~ 93 (200)
T PRK15000 26 FNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK------RGVEVVGVSF-D-----SEFVHNAWRNTPVDKG 93 (200)
T ss_pred eeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----CHHHHHHHHhhHHHhC
Confidence 344444 899999999996 899999999 9999999973 4799999996 3 2333455543 22221
Q ss_pred CceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEcc
Q 008311 414 PWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSP 456 (570)
Q Consensus 414 PW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~ 456 (570)
.=..++||.+.|. .+.+.+.|++. ++|.++||||+|+|+..
T Consensus 94 g~~~i~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~ 140 (200)
T PRK15000 94 GIGPVKYAMVADV--KREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQ 140 (200)
T ss_pred CccccCceEEECC--CcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEE
Confidence 1013567777776 35788999997 79999999999999875
No 47
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.28 E-value=1.6e-11 Score=120.01 Aligned_cols=110 Identities=14% Similarity=0.136 Sum_probs=81.7
Q ss_pred CCCCCeeeccccCCCEEEEEEec-CCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHH-
Q 008311 333 GSTKRRVNIEVLRRKNVLLLISD-LDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFET- 408 (570)
Q Consensus 333 g~~G~~Vsls~LkGKvVlL~FwA-sWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~- 408 (570)
+.+|+++++++++||+|+|+||+ .||+.|..++ |.++++++++ .+++||+||. | +......|..
T Consensus 23 ~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~------~g~~vv~IS~-d-----~~~~~~~~~~~ 90 (199)
T PTZ00253 23 NGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE------LNCEVLACSM-D-----SEYAHLQWTLQ 90 (199)
T ss_pred CCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH------cCCEEEEEeC-C-----CHHHHHHHHhC
Confidence 34678999999999999999996 7799999999 9999999973 4799999996 3 1222333321
Q ss_pred HHcCCCceeeccccccChHHHHHHHHhCCCC------CCceEEEECCCCcEEcc
Q 008311 409 LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------NKPILVVLDPQGRVVSP 456 (570)
Q Consensus 409 ~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~IPtlVVLDpqGkVv~~ 456 (570)
.....-.-.++||.+.|. .+.+.+.||+. ..|.++||||+|+|+..
T Consensus 91 ~~~~~~~~~~~fpll~D~--~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~ 142 (199)
T PTZ00253 91 ERKKGGLGTMAIPMLADK--TKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQI 142 (199)
T ss_pred hHhhCCccccccceEECc--HhHHHHHcCCcccCCCceEEEEEEECCCCEEEEE
Confidence 111111113577877785 46788999985 36899999999998863
No 48
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.28 E-value=1.3e-11 Score=122.67 Aligned_cols=114 Identities=11% Similarity=0.104 Sum_probs=82.7
Q ss_pred CCcc--cCCCCCeeec-cccCCCEEEE-EEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChh
Q 008311 328 QPLV--DGSTKRRVNI-EVLRRKNVLL-LISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDP 401 (570)
Q Consensus 328 ~pl~--~g~~G~~Vsl-s~LkGKvVlL-~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~ 401 (570)
.|.| .+.+|+ +.+ +.++||+|+| +|||+||++|..++ |.+.|+++++ .+++|++||+ | +..
T Consensus 13 aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~------~g~~VigvS~-D-----s~~ 79 (215)
T PRK13191 13 FPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK------LNTELIGLSV-D-----SNI 79 (215)
T ss_pred CCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----CHH
Confidence 4444 455675 566 5589996555 99999999999999 9999999973 4799999996 3 233
Q ss_pred hHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCC-------CCceEEEECCCCcEEcc
Q 008311 402 TQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-------NKPILVVLDPQGRVVSP 456 (570)
Q Consensus 402 ~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-------~IPtlVVLDpqGkVv~~ 456 (570)
..+.|.+...+.-=+.++||.+.|.. +.+.+.||+- .+|.++|||++|+|...
T Consensus 80 ~h~aw~~~~~~~~~~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 139 (215)
T PRK13191 80 SHIEWVMWIEKNLKVEVPFPIIADPM--GNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLI 139 (215)
T ss_pred HHHHHHhhHHHhcCCCCceEEEECCc--hHHHHHcCCcccccCCceeEEEEEECCCCEEEEE
Confidence 44556543221111246678777753 6788899973 47999999999999875
No 49
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.24 E-value=3.6e-11 Score=118.11 Aligned_cols=110 Identities=10% Similarity=0.124 Sum_probs=81.5
Q ss_pred ccCCCCCeeeccccCC-CE-EEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311 331 VDGSTKRRVNIEVLRR-KN-VLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF 406 (570)
Q Consensus 331 ~~g~~G~~Vsls~LkG-Kv-VlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F 406 (570)
+.+.+| .+++++++| |+ |+++|||+|||.|..++ |.++|+++++ .+++|++||+ | +......|
T Consensus 10 ~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~------~gv~vigvS~-D-----~~~~~~~~ 76 (203)
T cd03016 10 ADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKK------RNVKLIGLSV-D-----SVESHIKW 76 (203)
T ss_pred EecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHH------cCCEEEEEEC-C-----CHHHHHHH
Confidence 344556 589999999 64 56699999999999999 9999999973 4799999996 2 23334445
Q ss_pred HH-HHcCCCceeeccccccChHHHHHHHHhCCCC----C----CceEEEECCCCcEEcc
Q 008311 407 ET-LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK----N----KPILVVLDPQGRVVSP 456 (570)
Q Consensus 407 ~~-~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~----~----IPtlVVLDpqGkVv~~ 456 (570)
.+ ...... ..++||.+.|. ...+.+.||+. + .|.++||||+|+|+..
T Consensus 77 ~~~i~~~~~-~~~~fpil~D~--~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~ 132 (203)
T cd03016 77 IEDIEEYTG-VEIPFPIIADP--DREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI 132 (203)
T ss_pred HhhHHHhcC-CCCceeEEECc--hHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEE
Confidence 43 222223 56778887786 35788899975 3 3569999999999865
No 50
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.23 E-value=4.5e-11 Score=116.26 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=48.6
Q ss_pred ccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH-HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311 331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI-LEQIYNESRLHLTRQESHYEVVWIPI 391 (570)
Q Consensus 331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~-L~~iY~elk~~~~k~~~~fEIV~IsI 391 (570)
+.+.+|+.+++++++||+|+|+|||+||++|...- |+++|+++++ ++++|++||.
T Consensus 10 ~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~q~~~L~~L~~~y~~------~gl~Vlg~p~ 65 (183)
T PRK10606 10 VTTIDGEVTTLEKYAGNVLLIVNVASKCGLTPQYEQLENIQKAWAD------QGFVVLGFPC 65 (183)
T ss_pred eECCCCCEEeHHHhCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHhh------CCeEEEEeec
Confidence 45678899999999999999999999999997533 9999999973 5799999996
No 51
>PRK13189 peroxiredoxin; Provisional
Probab=99.23 E-value=4.2e-11 Score=119.56 Aligned_cols=112 Identities=14% Similarity=0.163 Sum_probs=80.3
Q ss_pred CcccCCCCCeeeccc-cCCCE-EEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311 329 PLVDGSTKRRVNIEV-LRRKN-VLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK 404 (570)
Q Consensus 329 pl~~g~~G~~Vsls~-LkGKv-VlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~ 404 (570)
..+.+.+|+ +++++ ++||+ |+++|||+|||+|..++ |.+.|+++++ .+++||+||+ | +.....
T Consensus 18 F~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~------~~v~VigvS~-D-----~~~~h~ 84 (222)
T PRK13189 18 FEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE------LNTELIGLSI-D-----QVFSHI 84 (222)
T ss_pred cEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH------cCCEEEEEEC-C-----CHHHHH
Confidence 334455664 67766 69995 55689999999999999 9999999973 4799999996 3 223334
Q ss_pred HHHH-HHcCCCceeeccccccChHHHHHHHHhCCCC-------CCceEEEECCCCcEEcc
Q 008311 405 KFET-LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK-------NKPILVVLDPQGRVVSP 456 (570)
Q Consensus 405 ~F~~-~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~-------~IPtlVVLDpqGkVv~~ 456 (570)
+|.+ +..... ..++||.+.|. .+.+.+.||+. .+|.++||||+|+|...
T Consensus 85 aw~~~~~~~~g-~~i~fPllsD~--~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 141 (222)
T PRK13189 85 KWVEWIKEKLG-VEIEFPIIADD--RGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAI 141 (222)
T ss_pred HHHHhHHHhcC-cCcceeEEEcC--ccHHHHHhCCCccccCCCceeEEEEECCCCeEEEE
Confidence 5543 222111 13567777775 35788899975 57999999999999754
No 52
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.16 E-value=1.3e-10 Score=108.25 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=58.6
Q ss_pred cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311 344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP 421 (570)
Q Consensus 344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP 421 (570)
-+||+|+|+|||+||++|+.+. |.+++++++ .++.|+.|.+ | .+ . |
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~-------~~~~~v~v~v-d-------~~--~---------~------ 65 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYG-------DQVNFVMLNV-D-------NP--K---------W------ 65 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhc-------cCeeEEEEEc-C-------Cc--c---------c------
Confidence 4789999999999999999998 999998884 2478888875 2 11 0 1
Q ss_pred cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
..+.+.|+|+++|+++++|++|+++.+
T Consensus 66 --------~~~~~~~~V~~iPt~v~~~~~G~~v~~ 92 (142)
T cd02950 66 --------LPEIDRYRVDGIPHFVFLDREGNEEGQ 92 (142)
T ss_pred --------HHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence 124567999999999999999999865
No 53
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.08 E-value=4.3e-10 Score=98.62 Aligned_cols=73 Identities=7% Similarity=0.015 Sum_probs=54.2
Q ss_pred ccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecc
Q 008311 343 VLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYH 420 (570)
Q Consensus 343 ~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~f 420 (570)
+.+||+|+|+|||+||+||+.++ |.++.++++ ++.++-|++ |++.+
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--------~v~~~~vd~--------d~~~~---------------- 59 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--------DVVFLLVNG--------DENDS---------------- 59 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--------CCEEEEEEC--------CCChH----------------
Confidence 34699999999999999999998 888887762 466666663 21110
Q ss_pred ccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 421 PTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 421 P~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
...+.+.|+|+++||++++ ++|+++.+
T Consensus 60 --------~~~l~~~~~V~~~Pt~~~~-~~G~~v~~ 86 (103)
T cd02985 60 --------TMELCRREKIIEVPHFLFY-KDGEKIHE 86 (103)
T ss_pred --------HHHHHHHcCCCcCCEEEEE-eCCeEEEE
Confidence 1236677999999997777 89998743
No 54
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.07 E-value=1.3e-10 Score=119.38 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=67.5
Q ss_pred CCeeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCC
Q 008311 336 KRRVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSM 413 (570)
Q Consensus 336 G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~M 413 (570)
++...+++++||+++++|||+||++|+.++ |.++++++ +++|++|++ |. +.. ..
T Consensus 156 ~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---------g~~Vi~Vsv-D~-----~~~--------~~- 211 (271)
T TIGR02740 156 QKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---------GIEVLPVSV-DG-----GPL--------PG- 211 (271)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---------CcEEEEEeC-CC-----Ccc--------cc-
Confidence 345788899999999999999999999999 99998876 388999997 31 110 11
Q ss_pred CceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccc
Q 008311 414 PWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNAL 459 (570)
Q Consensus 414 PW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~ 459 (570)
||.+.+. ..+.+.|||+++|+++++|++|+.+...+.
T Consensus 212 ------fp~~~~d---~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~ 248 (271)
T TIGR02740 212 ------FPNARPD---AGQAQQLKIRTVPAVFLADPDPNQFTPIGF 248 (271)
T ss_pred ------CCcccCC---HHHHHHcCCCcCCeEEEEECCCCEEEEEEe
Confidence 2322121 236788999999999999997665554333
No 55
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.9e-09 Score=102.48 Aligned_cols=110 Identities=19% Similarity=0.162 Sum_probs=86.2
Q ss_pred CCCcccCCCCCeeeccccCCCEEEEEEecC-CCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhH
Q 008311 327 LQPLVDGSTKRRVNIEVLRRKNVLLLISDL-DISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQ 403 (570)
Q Consensus 327 ~~pl~~g~~G~~Vsls~LkGKvVlL~FwAs-WCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~ 403 (570)
|...+.+.+|+.|++++++||.|+|||.-- ++|.|-.|. +.+.|.++++ -+.+|++||. | +....
T Consensus 11 PdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~------~~a~V~GIS~-D-----s~~~~ 78 (157)
T COG1225 11 PDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK------LGAVVLGISP-D-----SPKSH 78 (157)
T ss_pred CCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh------CCCEEEEEeC-C-----CHHHH
Confidence 344456889999999999999888888755 799999999 9999999973 4799999995 3 35566
Q ss_pred HHHHHHHcCCCceeeccccccChHHHHHHHHhCCCC------------CCceEEEECCCCcEEcc
Q 008311 404 KKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------------NKPILVVLDPQGRVVSP 456 (570)
Q Consensus 404 ~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------------~IPtlVVLDpqGkVv~~ 456 (570)
++|.+- +.++||-+.|.. +.+.+.||+- ..++++|||++|+|+..
T Consensus 79 ~~F~~k------~~L~f~LLSD~~--~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~ 135 (157)
T COG1225 79 KKFAEK------HGLTFPLLSDED--GEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYV 135 (157)
T ss_pred HHHHHH------hCCCceeeECCc--HHHHHHhCcccccccCccccccccceEEEECCCCeEEEE
Confidence 788653 345677666763 4688889873 36899999999999764
No 56
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.94 E-value=2.4e-09 Score=93.81 Aligned_cols=67 Identities=6% Similarity=-0.017 Sum_probs=51.4
Q ss_pred cccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeec
Q 008311 342 EVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVY 419 (570)
Q Consensus 342 s~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~ 419 (570)
++++||+|+|+|||+||+||+.++ |.++.++++ ++.++.|.. +. .
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--------~~~~~~vd~--------~~-----------------~ 60 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP--------QIRHLAIEE--------SS-----------------I 60 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--------cCceEEEEC--------CC-----------------C
Confidence 357999999999999999999998 999988874 355555531 10 1
Q ss_pred cccccChHHHHHHHHhCCCCCCceEEEECCC
Q 008311 420 HPTLIDRAVIRYVKDVWHFKNKPILVVLDPQ 450 (570)
Q Consensus 420 fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpq 450 (570)
+ ..+.+.|+++++||++++++.
T Consensus 61 ~---------~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 61 K---------PSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred C---------HHHHHhcCCeecCEEEEEcCC
Confidence 1 136678999999999999854
No 57
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.93 E-value=2e-09 Score=96.80 Aligned_cols=83 Identities=23% Similarity=0.356 Sum_probs=58.5
Q ss_pred CC-CEEEEEEecCCCHHhHHHH--H---HHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311 345 RR-KNVLLLISDLDISQEELSI--L---EQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV 418 (570)
Q Consensus 345 kG-KvVlL~FwAsWCpPCr~e~--L---~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV 418 (570)
.| |+|+|+|||+||++|+.+. + .++.+.++ ++|.++.|++ |. +.....|+.
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~-d~-----~~~~~~~~~---------- 68 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-------AHFVVVYINI-DG-----DKEVTDFDG---------- 68 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-------hheEEEEEEc-cC-----CceeeccCC----------
Confidence 57 9999999999999999987 4 35666664 2588888886 21 111111211
Q ss_pred ccccccChHHHHHHHHhCCCCCCceEEEECCC-CcEEcc
Q 008311 419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQ-GRVVSP 456 (570)
Q Consensus 419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpq-GkVv~~ 456 (570)
. . .....+...|+++++|+++++|++ |+++.+
T Consensus 69 ----~-~-~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~ 101 (125)
T cd02951 69 ----E-A-LSEKELARKYRVRFTPTVIFLDPEGGKEIAR 101 (125)
T ss_pred ----C-C-ccHHHHHHHcCCccccEEEEEcCCCCceeEE
Confidence 0 0 113568889999999999999999 898864
No 58
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.89 E-value=8.2e-09 Score=89.78 Aligned_cols=74 Identities=7% Similarity=0.002 Sum_probs=55.0
Q ss_pred CCCEEEEEEecCCCHHhHHHH--H---HHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeec
Q 008311 345 RRKNVLLLISDLDISQEELSI--L---EQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVY 419 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L---~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~ 419 (570)
.||+|+|+|||+||+||+.+. + .++.+.++ +++.++.|.+ .+.+
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~vd~-------~~~~----------------- 58 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK-------KDVVLLRADW-------TKND----------------- 58 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh-------CCeEEEEEec-------CCCC-----------------
Confidence 589999999999999999987 3 46777664 2577777764 1110
Q ss_pred cccccChHHHHHHHHhCCCCCCceEEEECC-CCcEEcc
Q 008311 420 HPTLIDRAVIRYVKDVWHFKNKPILVVLDP-QGRVVSP 456 (570)
Q Consensus 420 fP~l~D~~~~~~L~~~y~V~~IPtlVVLDp-qGkVv~~ 456 (570)
.....+.++|++.++|+++++++ +|+++.+
T Consensus 59 -------~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~ 89 (104)
T cd02953 59 -------PEITALLKRFGVFGPPTYLFYGPGGEPEPLR 89 (104)
T ss_pred -------HHHHHHHHHcCCCCCCEEEEECCCCCCCCcc
Confidence 01234677899999999999999 8987643
No 59
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.87 E-value=8.5e-09 Score=90.12 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=51.4
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
.|++|+|+|||+||+||+..+ |.+++++++ +..+.++-|++ | .
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~------~~~~~~~~vd~--------d-~-------------------- 60 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELG------DDLLHFATAEA--------D-T-------------------- 60 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcC------CCcEEEEEEeC--------C-C--------------------
Confidence 589999999999999999998 989988874 12355555542 2 1
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
..+.+.|+++++|+++++ ++|+.+.+
T Consensus 61 -------~~~~~~~~v~~~Pt~~~~-~~g~~~~~ 86 (102)
T cd02948 61 -------IDTLKRYRGKCEPTFLFY-KNGELVAV 86 (102)
T ss_pred -------HHHHHHcCCCcCcEEEEE-ECCEEEEE
Confidence 013467999999987777 58887754
No 60
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.86 E-value=1.1e-08 Score=87.25 Aligned_cols=68 Identities=12% Similarity=0.195 Sum_probs=52.7
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
+||+|+|+|||+||+||+... +.++++.++ ..+.++-|.+ +..
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~-------~~~~~~~vd~--------~~~-------------------- 55 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ-------GQFVLAKVNC--------DAQ-------------------- 55 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhC-------CcEEEEEEec--------cCC--------------------
Confidence 589999999999999999988 888888874 2355555543 111
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS 455 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~ 455 (570)
..+.+.|+++++|++++++ +|+++.
T Consensus 56 -------~~l~~~~~i~~~Pt~~~~~-~g~~~~ 80 (96)
T cd02956 56 -------PQIAQQFGVQALPTVYLFA-AGQPVD 80 (96)
T ss_pred -------HHHHHHcCCCCCCEEEEEe-CCEEee
Confidence 1366789999999999997 898764
No 61
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.76 E-value=3.1e-08 Score=88.12 Aligned_cols=72 Identities=13% Similarity=-0.021 Sum_probs=55.4
Q ss_pred ccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecc
Q 008311 343 VLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYH 420 (570)
Q Consensus 343 ~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~f 420 (570)
..+||+|+|+|||+||++|+... +.++.++++. .++.+.-|++ |..
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~------~~v~~~~vd~--------d~~------------------ 68 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP------LGVGIATVNA--------GHE------------------ 68 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh------cCceEEEEec--------ccc------------------
Confidence 34789999999999999999988 8999998852 2466666653 210
Q ss_pred ccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 421 PTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 421 P~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
..+.++|+|+++|++++++ +|+++..
T Consensus 69 ---------~~l~~~~~V~~~Pt~~i~~-~g~~~~~ 94 (111)
T cd02963 69 ---------RRLARKLGAHSVPAIVGII-NGQVTFY 94 (111)
T ss_pred ---------HHHHHHcCCccCCEEEEEE-CCEEEEE
Confidence 1256779999999999995 8887654
No 62
>PHA02278 thioredoxin-like protein
Probab=98.70 E-value=4e-08 Score=87.13 Aligned_cols=73 Identities=14% Similarity=0.319 Sum_probs=52.2
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
+++.|+|+|||+||+||+... +.++.+++. .+..++.|.+ | .+. +
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~-------~~~~~~~vdv-d-------~~~--~---------------- 59 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGD-------IKKPILTLNL-D-------AED--V---------------- 59 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc-------CCceEEEEEC-C-------ccc--c----------------
Confidence 688999999999999999877 777765542 2356788875 1 110 0
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
| ...+.++|+|+++||++++. +|+.+.+
T Consensus 60 --d---~~~l~~~~~I~~iPT~i~fk-~G~~v~~ 87 (103)
T PHA02278 60 --D---REKAVKLFDIMSTPVLIGYK-DGQLVKK 87 (103)
T ss_pred --c---cHHHHHHCCCccccEEEEEE-CCEEEEE
Confidence 1 12367789999999999886 4777654
No 63
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.70 E-value=7.2e-08 Score=84.40 Aligned_cols=92 Identities=13% Similarity=0.183 Sum_probs=55.2
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhh-HHHHHHHHcCCCceeeccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPT-QKKFETLQSSMPWYTVYHP 421 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~-~~~F~~~~~~MPW~aV~fP 421 (570)
+||+++++||+.|||.|+.+- +.+..+ +.. ..+.++.++.+++. .+++ ...+...... + .+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~-----~~ 67 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDND-VAR---YLKDDFQVIFVNID------DSRDESEAVLDFDGQ-K-----NV 67 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHH-HHC---EEHCECEEEECESH------SHHHHHHHHHSHTCH-S-----SC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHH-HHH---HhhcCeEEEEEecC------Ccccccccccccccc-h-----hh
Confidence 689999999999999999876 444322 221 11236888988861 1221 1122111111 1 11
Q ss_pred cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
. .....+.+.|+|++.|+++++|++|+++..
T Consensus 68 ~----~~~~~l~~~~~v~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 68 R----LSNKELAQRYGVNGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp H----HHHHHHHHHTT--SSSEEEECTTTSCEEEE
T ss_pred h----HHHHHHHHHcCCCccCEEEEEcCCCCEEEE
Confidence 1 124578999999999999999999998853
No 64
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=98.68 E-value=2.4e-07 Score=89.23 Aligned_cols=118 Identities=15% Similarity=0.219 Sum_probs=83.2
Q ss_pred CCcccCCCCCeeeccccCCCEEEEEEecCCCHH-hHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311 328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQ-EELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK 404 (570)
Q Consensus 328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpP-Cr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~ 404 (570)
...+.+.+|+.+++++++||+++|+|.-+-||. |-..+ |.++.+++++ + +.++++|+||+ |+.-+ +.+..+
T Consensus 34 ~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~---~-~~~v~~v~ISv-DP~~D-Tp~~L~ 107 (174)
T PF02630_consen 34 DFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGE---E-GKDVQFVFISV-DPERD-TPEVLK 107 (174)
T ss_dssp T-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHH---T-TTTEEEEEEES-STTTC--HHHHH
T ss_pred CcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhh---c-cCceEEEEEEe-CCCCC-CHHHHH
Confidence 455778899999999999999999999999954 88777 9999999975 2 56899999997 53211 123345
Q ss_pred HHHHHHcCCCceeeccccccChHHHHHHHHhCCCC----------------CCceEEEECCCCcEEcc
Q 008311 405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK----------------NKPILVVLDPQGRVVSP 456 (570)
Q Consensus 405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~----------------~IPtlVVLDpqGkVv~~ 456 (570)
+|.+.+ .-.|..+.+ +.+..+.+.+.|++. .-..++++||+|+++..
T Consensus 108 ~Y~~~~-~~~~~~ltg----~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~ 170 (174)
T PF02630_consen 108 KYAKKF-GPDFIGLTG----SREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI 170 (174)
T ss_dssp HHHHCH-TTTCEEEEE----EHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred HHHHhc-CCCcceeEe----CHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence 555433 235666665 444566777777753 22468899999999753
No 65
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.68 E-value=7.6e-08 Score=87.16 Aligned_cols=69 Identities=10% Similarity=0.080 Sum_probs=51.9
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
.+++|+|+|||+|||||+... |.++-+++. +.+.++-|.+ |+.
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~-------~~v~f~kVDv--------D~~-------------------- 57 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS-------NFAVIYLVDI--------DEV-------------------- 57 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcc-------CceEEEEEEC--------CCC--------------------
Confidence 468999999999999999766 777777763 2356666664 211
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
..+.+.|+|+++||++++. +|+.+.+
T Consensus 58 -------~~la~~~~V~~iPTf~~fk-~G~~v~~ 83 (114)
T cd02954 58 -------PDFNKMYELYDPPTVMFFF-RNKHMKI 83 (114)
T ss_pred -------HHHHHHcCCCCCCEEEEEE-CCEEEEE
Confidence 1367789999999999886 7888865
No 66
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.67 E-value=3.7e-08 Score=88.94 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=47.5
Q ss_pred cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311 344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP 421 (570)
Q Consensus 344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP 421 (570)
-+||+|+|+|||+||+||+... +.+..+... .+..+|.|.+ |. +++ .
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-------~~~~fv~v~v-d~-----~~~--~---------------- 65 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISE-------LSHNFVMVNL-ED-----DEE--P---------------- 65 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-------hcCcEEEEEe-cC-----CCC--c----------------
Confidence 4789999999999999999887 555433321 1224566654 10 100 0
Q ss_pred cccChHHHHHHHHhCCCCC--CceEEEECCCCcEEcc
Q 008311 422 TLIDRAVIRYVKDVWHFKN--KPILVVLDPQGRVVSP 456 (570)
Q Consensus 422 ~l~D~~~~~~L~~~y~V~~--IPtlVVLDpqGkVv~~ 456 (570)
..+.|++.+ +|+++++|++|+++.+
T Consensus 66 ----------~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 66 ----------KDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred ----------hhhhcccCCCccceEEEECCCCCCchh
Confidence 112355554 9999999999999875
No 67
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.65 E-value=7.8e-07 Score=88.07 Aligned_cols=165 Identities=10% Similarity=0.057 Sum_probs=97.0
Q ss_pred CCCEEEEEEe--cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecc
Q 008311 345 RRKNVLLLIS--DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYH 420 (570)
Q Consensus 345 kGKvVlL~Fw--AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~f 420 (570)
.|+.|+++++ |+|||||+... |.++-+++ ++++|.++.+ | .|+
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~--------~~~~i~~v~v-d-----~~~------------------- 65 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVS--------PKLKLEIYDF-D-----TPE------------------- 65 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhC--------CCceEEEEec-C-----Ccc-------------------
Confidence 3555666555 59999999865 55555444 2467777765 1 111
Q ss_pred ccccChHHHHHHHHhCCCCCCceEEEECCCCcEEc--ccc---chhHhhhcCCCCCCCchhHHHHhhhcCccccccccCC
Q 008311 421 PTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS--PNA---LHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGI 495 (570)
Q Consensus 421 P~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~--~na---~~~I~~~G~~aFPFt~~~~e~L~~e~~w~~~ll~d~~ 495 (570)
...+.+.|+|.++||+++++. |+.+. ..| .+.+.. -.+.+..-.. ....+
T Consensus 66 --------~~~l~~~~~V~~~Pt~~~f~~-g~~~~~~~~G~~~~~~l~~-----------~i~~~~~~~~-----~~~~L 120 (215)
T TIGR02187 66 --------DKEEAEKYGVERVPTTIILEE-GKDGGIRYTGIPAGYEFAA-----------LIEDIVRVSQ-----GEPGL 120 (215)
T ss_pred --------cHHHHHHcCCCccCEEEEEeC-CeeeEEEEeecCCHHHHHH-----------HHHHHHHhcC-----CCCCC
Confidence 123677899999999999874 55432 112 111110 0111110000 00011
Q ss_pred Cccc---cccccCCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311 496 DPLV---LDWIKEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 496 d~~i---~~~~~egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
++.. .+...++..|-+|.+..|++|+..-+.+.++..+ ...+.++.|..+...+..+ -+++..+||+++.++
T Consensus 121 ~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~~~i~~~~vD~~~~~~~~~-~~~V~~vPtl~i~~~ 195 (215)
T TIGR02187 121 SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALA-NDKILGEMIEANENPDLAE-KYGVMSVPKIVINKG 195 (215)
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHh-cCceEEEEEeCCCCHHHHH-HhCCccCCEEEEecC
Confidence 1111 1112344556666666699999999888887665 4467777788887776554 579999999998764
No 68
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.62 E-value=9.1e-08 Score=83.46 Aligned_cols=65 Identities=9% Similarity=-0.007 Sum_probs=47.6
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
++++|+|+|||+||+||+... |.+++++++. + +.++.+.-+.. +. +
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~---~-~~~~~~~~vd~--------~~------------------~-- 61 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKS---S-GSPVRVGKLDA--------TA------------------Y-- 61 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHh---c-CCcEEEEEEEC--------cc------------------C--
Confidence 567999999999999999998 9999998863 1 22344444432 10 1
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEEC
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLD 448 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLD 448 (570)
..+.+.|+++++|++++++
T Consensus 62 -------~~~~~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 62 -------SSIASEFGVRGYPTIKLLK 80 (104)
T ss_pred -------HhHHhhcCCccccEEEEEc
Confidence 1256679999999999994
No 69
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.62 E-value=1.3e-07 Score=86.29 Aligned_cols=80 Identities=11% Similarity=0.134 Sum_probs=59.0
Q ss_pred CCCEEEEEEec-------CCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCc
Q 008311 345 RRKNVLLLISD-------LDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPW 415 (570)
Q Consensus 345 kGKvVlL~FwA-------sWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW 415 (570)
+||+|+|+||| +|||||+... |.++.++++ .++.++-|.+ |.... |
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-------~~v~fv~Vdv-d~~~~-----------------w 74 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-------EDCVFIYCDV-GDRPY-----------------W 74 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-------CCCEEEEEEc-CCccc-----------------c
Confidence 68999999999 9999999887 999988874 2477888875 21111 1
Q ss_pred eeeccccccChHHHHHHHHhCCCC-CCceEEEECCCCcEEccccc
Q 008311 416 YTVYHPTLIDRAVIRYVKDVWHFK-NKPILVVLDPQGRVVSPNAL 459 (570)
Q Consensus 416 ~aV~fP~l~D~~~~~~L~~~y~V~-~IPtlVVLDpqGkVv~~na~ 459 (570)
. |. ...++..|++. ++||+++++..++++..+..
T Consensus 75 ~--------d~--~~~~~~~~~I~~~iPT~~~~~~~~~l~~~~c~ 109 (119)
T cd02952 75 R--------DP--NNPFRTDPKLTTGVPTLLRWKTPQRLVEDECL 109 (119)
T ss_pred c--------Cc--chhhHhccCcccCCCEEEEEcCCceecchhhc
Confidence 1 11 12366789998 99999999888888776643
No 70
>PRK09381 trxA thioredoxin; Provisional
Probab=98.61 E-value=1.7e-07 Score=82.04 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=53.3
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
.+++|+|+||++|||+|+... +.++.++++ .++.+..|.+ +..
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~-------~~~~~~~vd~--------~~~-------------------- 64 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-------GKLTVAKLNI--------DQN-------------------- 64 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhC-------CCcEEEEEEC--------CCC--------------------
Confidence 378999999999999999998 999999884 2477777764 111
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
..+.+.|++++.|+++++ ++|+++..
T Consensus 65 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~~ 90 (109)
T PRK09381 65 -------PGTAPKYGIRGIPTLLLF-KNGEVAAT 90 (109)
T ss_pred -------hhHHHhCCCCcCCEEEEE-eCCeEEEE
Confidence 013456899999999999 68988753
No 71
>PRK10996 thioredoxin 2; Provisional
Probab=98.60 E-value=1.7e-07 Score=86.84 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=52.6
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
.||+|+|+|||+||++|+.+. |.+++++++ .++.++-|.+ +..
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~-------~~v~~~~vd~--------~~~-------------------- 95 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS-------GKVRFVKVNT--------EAE-------------------- 95 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC-------CCeEEEEEeC--------CCC--------------------
Confidence 589999999999999999988 888888764 2455555542 110
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
..+.+.|+|+++|++++++ +|+++..
T Consensus 96 -------~~l~~~~~V~~~Ptlii~~-~G~~v~~ 121 (139)
T PRK10996 96 -------RELSARFRIRSIPTIMIFK-NGQVVDM 121 (139)
T ss_pred -------HHHHHhcCCCccCEEEEEE-CCEEEEE
Confidence 1356789999999998885 8998764
No 72
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.60 E-value=2.4e-07 Score=84.98 Aligned_cols=79 Identities=10% Similarity=0.064 Sum_probs=53.0
Q ss_pred CCCEEEEEEecCCCHHhHHHH-----HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeec
Q 008311 345 RRKNVLLLISDLDISQEELSI-----LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVY 419 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~-----L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~ 419 (570)
+||+|+|+|+|.||++|+..- -.++.+.+. ++|..|-|.+ ++..+ ....
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-------~~fv~VkvD~--------~~~~~-~~~~---------- 67 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-------ENFVPIKVDR--------EERPD-VDKI---------- 67 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-------CCEEEEEEeC--------CcCcH-HHHH----------
Confidence 689999999999999999764 235555553 2576665543 11111 1110
Q ss_pred cccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccc
Q 008311 420 HPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPN 457 (570)
Q Consensus 420 fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~n 457 (570)
........|++.|.|+++++||+|++++..
T Consensus 68 --------~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 68 --------YMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred --------HHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 112234478999999999999999999864
No 73
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.59 E-value=2e-07 Score=82.31 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=51.7
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
+||+|+|+|||+||+||+... +.++.++++ +.++.+..|.. |.+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~------~~~~~~~~vd~--------d~~-------------------- 65 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLA------GSNVKVAKFNA--------DGE-------------------- 65 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhc------cCCeEEEEEEC--------Ccc--------------------
Confidence 579999999999999999998 888888885 23577777764 210
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCc
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGR 452 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGk 452 (570)
+ .....+.|+++++|+++++++.|+
T Consensus 66 --~---~~~~~~~~~v~~~Pti~~f~~~~~ 90 (109)
T cd02993 66 --Q---REFAKEELQLKSFPTILFFPKNSR 90 (109)
T ss_pred --c---hhhHHhhcCCCcCCEEEEEcCCCC
Confidence 0 011234589999999999988765
No 74
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.58 E-value=1.5e-07 Score=81.41 Aligned_cols=68 Identities=12% Similarity=0.005 Sum_probs=51.5
Q ss_pred cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311 344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP 421 (570)
Q Consensus 344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP 421 (570)
.++++|+|+|||+||++|+... +.++.++++ ..+.+..|++ |+.
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~-------~~~~~~~vd~--------~~~------------------- 61 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD-------GVIRIGAVNC--------GDD------------------- 61 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc-------CceEEEEEeC--------Ccc-------------------
Confidence 4679999999999999999987 888888874 2466666654 111
Q ss_pred cccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311 422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV 454 (570)
Q Consensus 422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv 454 (570)
..+.++|+++++|+++++ ++|+.+
T Consensus 62 --------~~~~~~~~v~~~Pt~~~~-~~g~~~ 85 (101)
T cd03003 62 --------RMLCRSQGVNSYPSLYVF-PSGMNP 85 (101)
T ss_pred --------HHHHHHcCCCccCEEEEE-cCCCCc
Confidence 125667899999999999 678753
No 75
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.58 E-value=1.9e-07 Score=81.27 Aligned_cols=68 Identities=12% Similarity=0.050 Sum_probs=52.6
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
.|++|+|+|||+||++|+.+. +.++.++++ ..+.++.|+. +.+.
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~-------~~~~~~~v~~--------~~~~------------------- 62 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD-------GLVQVAAVDC--------DEDK------------------- 62 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhc-------CCceEEEEec--------Cccc-------------------
Confidence 478899999999999999987 888888774 2477787774 2110
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCc
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGR 452 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGk 452 (570)
...+.+.|+++++|+++++++.|+
T Consensus 63 ------~~~~~~~~~i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 63 ------NKPLCGKYGVQGFPTLKVFRPPKK 86 (109)
T ss_pred ------cHHHHHHcCCCcCCEEEEEeCCCc
Confidence 123567799999999999998874
No 76
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.58 E-value=1.3e-07 Score=81.00 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=49.7
Q ss_pred EEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccccC
Q 008311 348 NVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLID 425 (570)
Q Consensus 348 vVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~D 425 (570)
.|+|+|||+||++|+.+. +.+++++++. ...++.++.|.. +..
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~~~~~vd~--------~~~----------------------- 62 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNN----ENPSVKIAKVDC--------TQH----------------------- 62 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhc----cCCcEEEEEEEC--------CCC-----------------------
Confidence 499999999999999998 9999999862 123566665542 100
Q ss_pred hHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311 426 RAVIRYVKDVWHFKNKPILVVLDPQGRVV 454 (570)
Q Consensus 426 ~~~~~~L~~~y~V~~IPtlVVLDpqGkVv 454 (570)
..+.+.|+++++|+++++ ++|+.+
T Consensus 63 ----~~~~~~~~v~~~Pt~~~~-~~g~~~ 86 (102)
T cd03005 63 ----RELCSEFQVRGYPTLLLF-KDGEKV 86 (102)
T ss_pred ----hhhHhhcCCCcCCEEEEE-eCCCee
Confidence 125567999999999999 677754
No 77
>PTZ00051 thioredoxin; Provisional
Probab=98.55 E-value=1.7e-07 Score=80.08 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=49.1
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
.++.|+|+|||+||++|+.+. |.++.+++. ++.++.|.. ++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--------~~~~~~vd~--------~~--------------------- 59 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT--------KMVFVKVDV--------DE--------------------- 59 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--------CcEEEEEEC--------cc---------------------
Confidence 478999999999999999998 777777542 344444431 10
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
...+.+.|+++++|+++++ ++|+++..
T Consensus 60 ------~~~~~~~~~v~~~Pt~~~~-~~g~~~~~ 86 (98)
T PTZ00051 60 ------LSEVAEKENITSMPTFKVF-KNGSVVDT 86 (98)
T ss_pred ------hHHHHHHCCCceeeEEEEE-eCCeEEEE
Confidence 0135677999999997766 79988754
No 78
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.53 E-value=3.9e-07 Score=78.55 Aligned_cols=67 Identities=9% Similarity=0.018 Sum_probs=48.1
Q ss_pred cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311 344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP 421 (570)
Q Consensus 344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP 421 (570)
++|+ ++|+|||+||+||+.+. +.++.++++ +.++.+..|.. ++.
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~------~~~v~~~~vd~--------~~~------------------- 60 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSD------DLGINVAKVDV--------TQE------------------- 60 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhc------cCCeEEEEEEc--------cCC-------------------
Confidence 4676 57999999999999988 888877653 22455555542 110
Q ss_pred cccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311 422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRV 453 (570)
Q Consensus 422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV 453 (570)
..+.++|+++++|+++++ ++|++
T Consensus 61 --------~~~~~~~~i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 61 --------PGLSGRFFVTALPTIYHA-KDGVF 83 (101)
T ss_pred --------HhHHHHcCCcccCEEEEe-CCCCE
Confidence 125567999999999887 78875
No 79
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.52 E-value=4.1e-07 Score=77.42 Aligned_cols=71 Identities=10% Similarity=0.069 Sum_probs=53.0
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
+|++++|+||++||++|+.+. +.++.+.++. +.++.++.+.. ++.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~-----~~~~~~~~~d~--------~~~-------------------- 58 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKG-----DPDIVLAKVDA--------TAE-------------------- 58 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhcc-----CCceEEEEEEc--------cch--------------------
Confidence 789999999999999999987 8888887752 22455555542 111
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS 455 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~ 455 (570)
..+.+.|+++++|++++++++|.+..
T Consensus 59 -------~~~~~~~~i~~~P~~~~~~~~~~~~~ 84 (102)
T TIGR01126 59 -------KDLASRFGVSGFPTIKFFPKGKKPVD 84 (102)
T ss_pred -------HHHHHhCCCCcCCEEEEecCCCccee
Confidence 13567799999999999998887433
No 80
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.52 E-value=4.4e-07 Score=78.29 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=52.3
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
.+|+|+++||++||++|+... |.++.++++ .++.++.|++ |++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-------~~v~~~~id~--------d~~-------------------- 56 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFD-------GAVHFVEIDI--------DED-------------------- 56 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhC-------CceEEEEEEC--------CCC--------------------
Confidence 578999999999999999998 888888774 2466666653 111
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS 455 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~ 455 (570)
..+.+.|++.++|++++++ +|+++.
T Consensus 57 -------~~l~~~~~v~~vPt~~i~~-~g~~v~ 81 (97)
T cd02949 57 -------QEIAEAAGIMGTPTVQFFK-DKELVK 81 (97)
T ss_pred -------HHHHHHCCCeeccEEEEEE-CCeEEE
Confidence 1245678999999999995 788874
No 81
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.49 E-value=4.4e-07 Score=77.80 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=49.8
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
++++++|+|||+||++|+.+. +.++.++++. ...+.++.|.. +.+ ..
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-----~~~~~~~~id~--------~~~----------------~~-- 64 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-----DGKGVLAAVDC--------TKP----------------EH-- 64 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-----CCceEEEEEEC--------CCC----------------cc--
Confidence 577999999999999999998 8888888852 12344444442 110 01
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV 454 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv 454 (570)
..+.+.|+++++|+++++ ++|+++
T Consensus 65 -------~~~~~~~~i~~~Pt~~~~-~~g~~~ 88 (104)
T cd02997 65 -------DALKEEYNVKGFPTFKYF-ENGKFV 88 (104)
T ss_pred -------HHHHHhCCCccccEEEEE-eCCCee
Confidence 125677899999997766 478764
No 82
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.49 E-value=6.7e-07 Score=77.51 Aligned_cols=68 Identities=7% Similarity=-0.000 Sum_probs=50.4
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
.+++|+|+|||+||++|+.+. +.++.++++ ..+.+.-|.. ++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~-------~~~~~~~vd~--------~~--------------------- 61 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALK-------GKVKVGSVDC--------QK--------------------- 61 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCcEEEEEEC--------Cc---------------------
Confidence 467999999999999999988 878777763 2455666553 11
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV 454 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv 454 (570)
...+.+.|+++++|++++++..|+.+
T Consensus 62 ------~~~~~~~~~i~~~Pt~~~~~~g~~~~ 87 (104)
T cd03004 62 ------YESLCQQANIRAYPTIRLYPGNASKY 87 (104)
T ss_pred ------hHHHHHHcCCCcccEEEEEcCCCCCc
Confidence 11356779999999999998764543
No 83
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.49 E-value=6e-07 Score=85.13 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=53.5
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
++++|+|+|||+||+||+... +.++.++++ +.++.++-|.+ |+..+--++ |
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~------~~~v~f~~VDv--------d~~~~la~~-----------~-- 98 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYN------NNNLKFGKIDI--------GRFPNVAEK-----------F-- 98 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcc------cCCeEEEEEEC--------CCCHHHHHH-----------c--
Confidence 468999999999999999988 888888774 23588888875 222111111 0
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcccc
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNA 458 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na 458 (570)
.+...|+++++||++++. +|+.+.+-.
T Consensus 99 --------~V~~~~~v~~~PT~ilf~-~Gk~v~r~~ 125 (152)
T cd02962 99 --------RVSTSPLSKQLPTIILFQ-GGKEVARRP 125 (152)
T ss_pred --------CceecCCcCCCCEEEEEE-CCEEEEEEe
Confidence 122235666799999885 898886533
No 84
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.47 E-value=5.1e-07 Score=76.87 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=49.6
Q ss_pred CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311 346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL 423 (570)
Q Consensus 346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l 423 (570)
+|+|+++|||+||++|+... |.++.+++. .++.++.|.. ++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-------~~i~~~~vd~--------~~---------------------- 56 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-------PSVLFLSIEA--------EE---------------------- 56 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-------CceEEEEEcc--------cc----------------------
Confidence 79999999999999999887 777777652 2344444431 10
Q ss_pred cChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
...+.+.|++.+.|++++++ +|+++.+
T Consensus 57 -----~~~~~~~~~i~~~Pt~~~~~-~g~~~~~ 83 (97)
T cd02984 57 -----LPEISEKFEITAVPTFVFFR-NGTIVDR 83 (97)
T ss_pred -----CHHHHHhcCCccccEEEEEE-CCEEEEE
Confidence 01356779999999999995 8988754
No 85
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.45 E-value=5.9e-07 Score=78.75 Aligned_cols=73 Identities=11% Similarity=0.072 Sum_probs=50.8
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
.+++|+|+|||+||++|+.+. +.++.++++++. ....++.+..|.. |.
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~-~~~~~~~~~~vd~--------d~--------------------- 66 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEF-PDAGKVVWGKVDC--------DK--------------------- 66 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhcc-CCCCcEEEEEEEC--------CC---------------------
Confidence 358999999999999999998 888888886311 0011344444432 11
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV 454 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv 454 (570)
...+.++|+++++|+++++ ++|++.
T Consensus 67 ------~~~l~~~~~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 67 ------ESDIADRYRINKYPTLKLF-RNGMMM 91 (108)
T ss_pred ------CHHHHHhCCCCcCCEEEEE-eCCcCc
Confidence 0236778999999999999 678743
No 86
>PTZ00062 glutaredoxin; Provisional
Probab=98.43 E-value=1.9e-06 Score=85.44 Aligned_cols=145 Identities=10% Similarity=0.148 Sum_probs=82.7
Q ss_pred CEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccccc
Q 008311 347 KNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLI 424 (570)
Q Consensus 347 KvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~ 424 (570)
+.++|+|||+|||||+.-. |.++-+++. + +.|+.+ |++
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--------~--~~F~~V--------~~d---------------------- 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP--------S--LEFYVV--------NLA---------------------- 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC--------C--cEEEEE--------ccc----------------------
Confidence 4579999999999999766 777766652 2 455554 111
Q ss_pred ChHHHHHHHHhCCCCCCceEEEECCCCcEEcc----ccchhHh---hhcCCCCCCCchhHHHHhhhcCccccccccCCCc
Q 008311 425 DRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP----NALHMMW---IWGSNAFPFTSLREEALWKEETWRLELLVDGIDP 497 (570)
Q Consensus 425 D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~----na~~~I~---~~G~~aFPFt~~~~e~L~~e~~w~~~ll~d~~d~ 497 (570)
|+|.++|+.+++. +|+++.+ |+..+.. .|-.. ...++ ...
T Consensus 58 -----------~~V~~vPtfv~~~-~g~~i~r~~G~~~~~~~~~~~~~~~~------~~~~~---------------~~~ 104 (204)
T PTZ00062 58 -----------DANNEYGVFEFYQ-NSQLINSLEGCNTSTLVSFIRGWAQK------GSSED---------------TVE 104 (204)
T ss_pred -----------cCcccceEEEEEE-CCEEEeeeeCCCHHHHHHHHHHHcCC------CCHHH---------------HHH
Confidence 7889999999995 7777664 3333221 11110 00000 011
Q ss_pred cccccccCCeEEEEE--ecC---CCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccccccccccCCC
Q 008311 498 LVLDWIKEGKYIFLY--GGD---DVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 498 ~i~~~~~egk~I~lY--fga---d~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~~~~ 569 (570)
.+.+.+.+ +-|.+| |.. .|++|+ +++++.++.+++++.+=+..|.. ++.+++.-+--..|.+.+.|+
T Consensus 105 ~v~~li~~-~~Vvvf~Kg~~~~p~C~~C~----~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~ 177 (204)
T PTZ00062 105 KIERLIRN-HKILLFMKGSKTFPFCRFSN----AVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGE 177 (204)
T ss_pred HHHHHHhc-CCEEEEEccCCCCCCChhHH----HHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCE
Confidence 12222223 334444 533 377774 56666677799999888876532 123333333345577777775
No 87
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=98.43 E-value=9.6e-07 Score=83.42 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=75.5
Q ss_pred CCCeeeccc-cCCC-EEEEEEecCCCHHhHHH-H--HHHHHHHHhhhhhccCCCe-EEEEEecccCCCCCChhhHHHHHH
Q 008311 335 TKRRVNIEV-LRRK-NVLLLISDLDISQEELS-I--LEQIYNESRLHLTRQESHY-EVVWIPIVDHFIHWDDPTQKKFET 408 (570)
Q Consensus 335 ~G~~Vsls~-LkGK-vVlL~FwAsWCpPCr~e-~--L~~iY~elk~~~~k~~~~f-EIV~IsIvD~s~~w~D~~~~~F~~ 408 (570)
+|+.+++++ ++|| +|+++|.+.|||.|..+ + +.+.|+++++ .+. +|+.||. | +....++|.+
T Consensus 17 ~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~------~g~~~V~~iS~-D-----~~~~~~~~~~ 84 (155)
T cd03013 17 PPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKA------KGVDEVICVSV-N-----DPFVMKAWGK 84 (155)
T ss_pred CCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHH------CCCCEEEEEEC-C-----CHHHHHHHHH
Confidence 488999999 5885 67778889999999999 8 9999999973 367 6999996 2 2445566754
Q ss_pred HHcCCCceeeccccccChHHHHHHHHhCCCC------C-----CceEEEECCCCcEEcc
Q 008311 409 LQSSMPWYTVYHPTLIDRAVIRYVKDVWHFK------N-----KPILVVLDPQGRVVSP 456 (570)
Q Consensus 409 ~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~------~-----IPtlVVLDpqGkVv~~ 456 (570)
-.. . .++||.+.|. .+.+.+.||+. + ...++||| +|+|+..
T Consensus 85 ~~~-~---~~~f~lLsD~--~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~ 136 (155)
T cd03013 85 ALG-A---KDKIRFLADG--NGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYL 136 (155)
T ss_pred hhC-C---CCcEEEEECC--CHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEE
Confidence 322 1 1356666675 46788899872 2 36789999 6999864
No 88
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.38 E-value=2.1e-06 Score=76.89 Aligned_cols=75 Identities=8% Similarity=-0.026 Sum_probs=51.1
Q ss_pred CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311 346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL 423 (570)
Q Consensus 346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l 423 (570)
+|+|+++|||+||++|+.+. +.++.++++++ ...+.+.-|+. +.+.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~----~~~v~~~~vd~--------~~~~-------------------- 66 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW----RPVVRVAAVDC--------ADEE-------------------- 66 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc----CCceEEEEEec--------cchh--------------------
Confidence 47999999999999999998 88888888631 12344444431 1100
Q ss_pred cChHHHHHHHHhCCCCCCceEEEECCCCcEEcccc
Q 008311 424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNA 458 (570)
Q Consensus 424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na 458 (570)
...+.+.|+++++|+++++.+.+ ....+|
T Consensus 67 -----~~~~~~~~~i~~~Pt~~lf~~~~-~~~~~~ 95 (114)
T cd02992 67 -----NVALCRDFGVTGYPTLRYFPPFS-KEATDG 95 (114)
T ss_pred -----hHHHHHhCCCCCCCEEEEECCCC-ccCCCC
Confidence 12356779999999999996655 444433
No 89
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.36 E-value=1.8e-06 Score=73.07 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=50.9
Q ss_pred CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311 346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL 423 (570)
Q Consensus 346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l 423 (570)
+|.|+|+||++||++|+.+. |.++.+++. .++.++.|.. +..
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~vd~--------~~~--------------------- 57 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE-------GKVKFVKLNV--------DEN--------------------- 57 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc-------CCeEEEEEEC--------CCC---------------------
Confidence 57999999999999999988 888877763 2577777753 111
Q ss_pred cChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311 424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS 455 (570)
Q Consensus 424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~ 455 (570)
..+.+.|++.++|+++++ ++|+++.
T Consensus 58 ------~~~~~~~~v~~~P~~~~~-~~g~~~~ 82 (101)
T TIGR01068 58 ------PDIAAKYGIRSIPTLLLF-KNGKEVD 82 (101)
T ss_pred ------HHHHHHcCCCcCCEEEEE-eCCcEee
Confidence 124567899999999999 6787653
No 90
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.34 E-value=1.6e-06 Score=74.11 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=50.4
Q ss_pred CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311 346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL 423 (570)
Q Consensus 346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l 423 (570)
||+|+++|||+||++|+.+. +.++.++++. ..++.++-+.. +.. .
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-----~~~~~~~~id~--------~~~-----------------~--- 64 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-----EDDVVIAKVDA--------DEA-----------------N--- 64 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-----CCCEEEEEEEC--------CCc-----------------c---
Confidence 67999999999999999987 8888888751 23465555542 110 1
Q ss_pred cChHHHHHHHHhCCCCCCceEEEECCCCc
Q 008311 424 IDRAVIRYVKDVWHFKNKPILVVLDPQGR 452 (570)
Q Consensus 424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGk 452 (570)
..+.+.|+++++|+++++++.|+
T Consensus 65 ------~~~~~~~~i~~~P~~~~~~~~~~ 87 (105)
T cd02998 65 ------KDLAKKYGVSGFPTLKFFPKGST 87 (105)
T ss_pred ------hhhHHhCCCCCcCEEEEEeCCCC
Confidence 13566799999999999998764
No 91
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.33 E-value=1.9e-06 Score=77.76 Aligned_cols=67 Identities=16% Similarity=0.049 Sum_probs=48.8
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
.+++|+|.|||+||+||+... +.++-++++ +.+.++-|.. |+..
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~-------~~v~~~~Vd~--------d~~~------------------- 73 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS-------DQVLFVAINC--------WWPQ------------------- 73 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCeEEEEEEC--------CCCh-------------------
Confidence 568999999999999999988 888888874 2355565553 1110
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRV 453 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV 453 (570)
....++|+|+++||+.++ ++|+.
T Consensus 74 -------~l~~~~~~I~~~PTl~lf-~~g~~ 96 (113)
T cd03006 74 -------GKCRKQKHFFYFPVIHLY-YRSRG 96 (113)
T ss_pred -------HHHHHhcCCcccCEEEEE-ECCcc
Confidence 112357999999999999 56764
No 92
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.30 E-value=3.5e-06 Score=70.41 Aligned_cols=67 Identities=10% Similarity=0.060 Sum_probs=50.8
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
++++++++||+.||++|+.+. +.++.+.++. +.++.++-|+. ++
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-----~~~~~~~~v~~--------~~--------------------- 59 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-----DGKVVVAKVDC--------TA--------------------- 59 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-----CCceEEEEeec--------cc---------------------
Confidence 456999999999999999998 8888887741 23566665542 11
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCC
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQG 451 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqG 451 (570)
...+.+.|+++++|++++++++|
T Consensus 60 ------~~~~~~~~~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 60 ------NNDLCSEYGVRGYPTIKLFPNGS 82 (101)
T ss_pred ------hHHHHHhCCCCCCCEEEEEcCCC
Confidence 11356779999999999999887
No 93
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.28 E-value=5.1e-06 Score=71.20 Aligned_cols=63 Identities=8% Similarity=-0.019 Sum_probs=47.7
Q ss_pred CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311 346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL 423 (570)
Q Consensus 346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l 423 (570)
+++|+|+|||+||++|+.+. +.++.++++ ..+.+..+.. ++
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~id~--------~~---------------------- 60 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK-------GIVKVGAVDA--------DV---------------------- 60 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc-------CCceEEEEEC--------cc----------------------
Confidence 56799999999999999998 888887774 2466666642 11
Q ss_pred cChHHHHHHHHhCCCCCCceEEEECCC
Q 008311 424 IDRAVIRYVKDVWHFKNKPILVVLDPQ 450 (570)
Q Consensus 424 ~D~~~~~~L~~~y~V~~IPtlVVLDpq 450 (570)
...+.+.|+++++|+++++++.
T Consensus 61 -----~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 61 -----HQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred -----hHHHHHHCCCCccCEEEEECCC
Confidence 0135678999999999999755
No 94
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.27 E-value=2.4e-06 Score=77.49 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=51.8
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCC-eEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESH-YEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP 421 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~-fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP 421 (570)
.+|+|+|.|+|+|||||+.-- |.++-++++ + ..|+-|.+ |+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~--------~~~~f~kVDV--------De-------------------- 56 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS--------KMASIYLVDV--------DK-------------------- 56 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc--------CceEEEEEec--------cc--------------------
Confidence 689999999999999998765 777777663 3 33444432 11
Q ss_pred cccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcC
Q 008311 422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGS 467 (570)
Q Consensus 422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~ 467 (570)
...+.+.|+++.+|+.+++ .|+.||+-+.|.
T Consensus 57 -------v~dva~~y~I~amPtfvff--------kngkh~~~d~gt 87 (114)
T cd02986 57 -------VPVYTQYFDISYIPSTIFF--------FNGQHMKVDYGS 87 (114)
T ss_pred -------cHHHHHhcCceeCcEEEEE--------ECCcEEEEecCC
Confidence 1236777999999999977 566677777774
No 95
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.7e-06 Score=77.34 Aligned_cols=65 Identities=15% Similarity=0.133 Sum_probs=47.3
Q ss_pred CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311 346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL 423 (570)
Q Consensus 346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l 423 (570)
+|.|+++|.|+|||||+.-- +.++-.++. +..++-|++ |+ |
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~--------~v~Flkvdv--------de-------------~-------- 63 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYP--------DVVFLKVDV--------DE-------------L-------- 63 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCC--------CCEEEEEec--------cc-------------C--------
Confidence 79999999999999999765 666666653 466666664 21 1
Q ss_pred cChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311 424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVV 454 (570)
Q Consensus 424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv 454 (570)
..+.+.|+++.+||.+++ ++|+.+
T Consensus 64 ------~~~~~~~~V~~~PTf~f~-k~g~~~ 87 (106)
T KOG0907|consen 64 ------EEVAKEFNVKAMPTFVFY-KGGEEV 87 (106)
T ss_pred ------HhHHHhcCceEeeEEEEE-ECCEEE
Confidence 125677999999999999 455444
No 96
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.26 E-value=4.1e-06 Score=76.39 Aligned_cols=38 Identities=8% Similarity=0.123 Sum_probs=31.8
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI 391 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI 391 (570)
.|+.+++||+++|||||+.+. |.++-++. +..|.+|.+
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---------~~~~y~vdv 61 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---------KAPIYYIDS 61 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---------CCcEEEEEC
Confidence 478899999999999999998 88776652 366899986
No 97
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.23 E-value=3.1e-06 Score=95.64 Aligned_cols=73 Identities=11% Similarity=0.037 Sum_probs=52.3
Q ss_pred cCCCEEEEEEecCCCHHhHHHH---H--HHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311 344 LRRKNVLLLISDLDISQEELSI---L--EQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV 418 (570)
Q Consensus 344 LkGKvVlL~FwAsWCpPCr~e~---L--~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV 418 (570)
-+||+|+|+|||+||++|+... + .++.++++ ++.++-|.+ ++.+.
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--------~~~~v~vDv-------t~~~~--------------- 521 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--------DTVLLQADV-------TANNA--------------- 521 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--------CCEEEEEEC-------CCCCh---------------
Confidence 3589999999999999999764 2 45555552 465555553 22110
Q ss_pred ccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311 419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS 455 (570)
Q Consensus 419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~ 455 (570)
..+.+.++|++.++|+++++|++|+++.
T Consensus 522 ---------~~~~l~~~~~v~g~Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 522 ---------EDVALLKHYNVLGLPTILFFDAQGQEIP 549 (571)
T ss_pred ---------hhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence 1234677899999999999999999864
No 98
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.5e-06 Score=81.91 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=51.3
Q ss_pred CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311 346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL 423 (570)
Q Consensus 346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l 423 (570)
+.+|++.|||.||+||+... |+++-.+++ ..|.+.=|.+ |+ +
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~-------g~~k~~kvdt--------D~------------------~--- 104 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYA-------GKFKLYKVDT--------DE------------------H--- 104 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhc-------CeEEEEEEcc--------cc------------------c---
Confidence 57999999999999999998 999988885 2477776663 21 1
Q ss_pred cChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311 424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVV 454 (570)
Q Consensus 424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv 454 (570)
-.+++.|+|+.+|++++++ +|+.+
T Consensus 105 ------~ela~~Y~I~avPtvlvfk-nGe~~ 128 (150)
T KOG0910|consen 105 ------PELAEDYEISAVPTVLVFK-NGEKV 128 (150)
T ss_pred ------cchHhhcceeeeeEEEEEE-CCEEe
Confidence 1267789999999999985 56655
No 99
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.21 E-value=4.8e-06 Score=76.07 Aligned_cols=68 Identities=7% Similarity=0.032 Sum_probs=48.1
Q ss_pred CEEEEEEecCCCHH--hHHHH----HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecc
Q 008311 347 KNVLLLISDLDISQ--EELSI----LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYH 420 (570)
Q Consensus 347 KvVlL~FwAsWCpP--Cr~e~----L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~f 420 (570)
++|+++|||.||+| |+..+ |.++-.++-+ +.++.|+-|.+ |+
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~-----~~~v~~~kVD~--------d~------------------- 75 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLE-----DKGIGFGLVDS--------KK------------------- 75 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhh-----cCCCEEEEEeC--------CC-------------------
Confidence 59999999999999 99766 3455444410 23566666653 11
Q ss_pred ccccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311 421 PTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS 455 (570)
Q Consensus 421 P~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~ 455 (570)
...++++|+|+++||++++. +|+++.
T Consensus 76 --------~~~La~~~~I~~iPTl~lfk-~G~~v~ 101 (120)
T cd03065 76 --------DAKVAKKLGLDEEDSIYVFK-DDEVIE 101 (120)
T ss_pred --------CHHHHHHcCCccccEEEEEE-CCEEEE
Confidence 12377889999999999995 888764
No 100
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.3e-06 Score=88.49 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=54.0
Q ss_pred cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311 344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP 421 (570)
Q Consensus 344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP 421 (570)
-+-++|+++|||+||+||+..+ |.++-.+++ ..|.++-|++ |+.
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~-------G~f~LakvN~--------D~~------------------- 86 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK-------GKFKLAKVNC--------DAE------------------- 86 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhC-------CceEEEEecC--------Ccc-------------------
Confidence 3567999999999999999999 999999995 3688888875 211
Q ss_pred cccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311 422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV 454 (570)
Q Consensus 422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv 454 (570)
..+...|||++||+.|++ .+|+.|
T Consensus 87 --------p~vAaqfgiqsIPtV~af-~dGqpV 110 (304)
T COG3118 87 --------PMVAAQFGVQSIPTVYAF-KDGQPV 110 (304)
T ss_pred --------hhHHHHhCcCcCCeEEEe-eCCcCc
Confidence 125677999999998877 356655
No 101
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.17 E-value=5.6e-06 Score=83.27 Aligned_cols=67 Identities=12% Similarity=0.120 Sum_probs=49.8
Q ss_pred CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311 346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL 423 (570)
Q Consensus 346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l 423 (570)
+++++|+|||+||++|+.+. +.++.++++ +.+.+.-|.. ++
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~-------~~v~~~~VD~--------~~---------------------- 94 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALK-------GQVNVADLDA--------TR---------------------- 94 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcC-------CCeEEEEecC--------cc----------------------
Confidence 57999999999999999998 888888874 1343333321 11
Q ss_pred cChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311 424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS 455 (570)
Q Consensus 424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~ 455 (570)
...+.++|+|+++|++++++ +|+++.
T Consensus 95 -----~~~l~~~~~I~~~PTl~~f~-~G~~v~ 120 (224)
T PTZ00443 95 -----ALNLAKRFAIKGYPTLLLFD-KGKMYQ 120 (224)
T ss_pred -----cHHHHHHcCCCcCCEEEEEE-CCEEEE
Confidence 01366789999999999998 787764
No 102
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=9.6e-06 Score=79.46 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=80.3
Q ss_pred CeeeccccCCCEEEEEEecCCC-HHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCC
Q 008311 337 RRVNIEVLRRKNVLLLISDLDI-SQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSM 413 (570)
Q Consensus 337 ~~Vsls~LkGKvVlL~FwAsWC-pPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~M 413 (570)
.+++++++.||.++|+|+-.+- +-|-.|+ +.+.|+++++ .+.||++||+ | +...-.+|.+.-.+.
T Consensus 24 ~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~------~g~eVigvS~-D-----s~fsH~aW~~~~~~~ 91 (194)
T COG0450 24 EEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQK------RGVEVIGVST-D-----SVFSHKAWKATIREA 91 (194)
T ss_pred eEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHH------cCCEEEEEec-C-----cHHHHHHHHhcHHhc
Confidence 3899999999999999998874 5587888 9999999974 4799999996 4 345566776542222
Q ss_pred Cce-eeccccccChHHHHHHHHhCCCC----C--CceEEEECCCCcEEc
Q 008311 414 PWY-TVYHPTLIDRAVIRYVKDVWHFK----N--KPILVVLDPQGRVVS 455 (570)
Q Consensus 414 PW~-aV~fP~l~D~~~~~~L~~~y~V~----~--IPtlVVLDpqGkVv~ 455 (570)
.=. .++||.+.|. .+.+.+.||+- | .=.++||||+|+|..
T Consensus 92 ~gi~~i~~PmiaD~--~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~ 138 (194)
T COG0450 92 GGIGKIKFPMIADP--KGEIARAYGVLHPEEGLALRGTFIIDPDGVIRH 138 (194)
T ss_pred CCccceecceEEcC--chhHHHHcCCcccCCCcceeEEEEECCCCeEEE
Confidence 222 3889988775 57899999984 2 346899999999864
No 103
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.13 E-value=3.1e-06 Score=79.81 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=51.9
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh--------CCCCEEEEEEecCCchhhhhhccccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT--------ARIPLEMVYVGKSTKRDKCGESWQPLQL 561 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~--------~~~~fEiv~Vs~d~~~e~~~~~~~~~~~ 561 (570)
...||.+.|||.|. |+||++|+|.|.++|++ .+.+||+|+||.|.++++++++++.+++
T Consensus 22 ~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~ 89 (146)
T cd03008 22 RLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPK 89 (146)
T ss_pred HhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCC
Confidence 46899999999999 99999999999999964 2346999999999999889999888873
No 104
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.13 E-value=1.3e-05 Score=71.30 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=47.5
Q ss_pred CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311 346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL 423 (570)
Q Consensus 346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l 423 (570)
|+.|+++|||+||+||+... |.++.+++. ++.++-|.+ ++
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--------~v~f~~vd~--------~~---------------------- 65 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP--------ETKFVKINA--------EK---------------------- 65 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--------CcEEEEEEc--------hh----------------------
Confidence 68999999999999999876 777766652 344444432 10
Q ss_pred cChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
. .+.+.|+++++|+++++. +|+.+.+
T Consensus 66 -----~-~l~~~~~i~~~Pt~~~f~-~G~~v~~ 91 (113)
T cd02957 66 -----A-FLVNYLDIKVLPTLLVYK-NGELIDN 91 (113)
T ss_pred -----h-HHHHhcCCCcCCEEEEEE-CCEEEEE
Confidence 1 356679999999988885 6888754
No 105
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.11 E-value=5.3e-06 Score=70.56 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=51.7
Q ss_pred CeEEEEEecCC-CchHHHHHHHHHHHHhhC--CCCEEEEEEecCCchhhhhhccccc--ccccccc
Q 008311 506 GKYIFLYGGDD-VEWVRKFTTAARSVANTA--RIPLEMVYVGKSTKRDKCGESWQPL--QLKSLVT 566 (570)
Q Consensus 506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~--~~~fEiv~Vs~d~~~e~~~~~~~~~--~~~~~~~ 566 (570)
||++.|||.+. |++|+++.+.|.++|++. +.++|+|+||.|+++++++++++.. ++..+..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~ 66 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPF 66 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEET
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEee
Confidence 79999999888 999999999999999764 5999999999999999999998888 5555443
No 106
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.11 E-value=1e-05 Score=76.15 Aligned_cols=67 Identities=4% Similarity=-0.004 Sum_probs=49.4
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
.+|+|+|.|||+||+||+... |.++-++++ +...|+-|.+ |+.
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~-------~~~~~~kVDV--------De~-------------------- 66 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIK-------NFAVIYLVDI--------TEV-------------------- 66 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcC-------CceEEEEEEC--------CCC--------------------
Confidence 568999999999999999886 888887774 2355566654 211
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRV 453 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV 453 (570)
..+.+.|++++.|+++++=++|++
T Consensus 67 -------~dla~~y~I~~~~t~~~ffk~g~~ 90 (142)
T PLN00410 67 -------PDFNTMYELYDPCTVMFFFRNKHI 90 (142)
T ss_pred -------HHHHHHcCccCCCcEEEEEECCeE
Confidence 136677999989888866667764
No 107
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.10 E-value=1.7e-05 Score=67.48 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=50.1
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
.++.|+|+|++.||++|+.+. |.++.++++ .++.++-|.. ++
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~-------~~v~~~~vd~--------~~--------------------- 59 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYK-------DNVKFAKVDC--------DE--------------------- 59 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTT-------TTSEEEEEET--------TT---------------------
T ss_pred cCCCEEEEEeCCCCCccccccceecccccccc-------cccccchhhh--------hc---------------------
Confidence 369999999999999999988 888888774 2566666653 10
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRV 453 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV 453 (570)
...+.++|+++++|+++++...+.+
T Consensus 60 ------~~~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 60 ------NKELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp ------SHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred ------cchhhhccCCCCCCEEEEEECCcEE
Confidence 0236778999999999999654444
No 108
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.09 E-value=1.6e-05 Score=67.93 Aligned_cols=40 Identities=10% Similarity=0.040 Sum_probs=31.7
Q ss_pred CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEe
Q 008311 346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIP 390 (570)
Q Consensus 346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~Is 390 (570)
||.|+|+|||+||++|+.+. +.++.+.+++ ..++.+.-|.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-----~~~~~~~~id 59 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-----DDNVVIAKMD 59 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-----CCCEEEEEEe
Confidence 58999999999999999988 8888888852 2345555554
No 109
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.07 E-value=3.5e-05 Score=76.59 Aligned_cols=116 Identities=13% Similarity=0.203 Sum_probs=83.2
Q ss_pred CcccCCCCCeeeccccCCCEEEEEEecCCCHH-hHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHH
Q 008311 329 PLVDGSTKRRVNIEVLRRKNVLLLISDLDISQ-EELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKK 405 (570)
Q Consensus 329 pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpP-Cr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~ 405 (570)
..+.+.+|++++...|+||+++++|.-+-||. |-..+ |.++.+++.+ ..+.++.+|+|++ |+. .|. .+.
T Consensus 50 f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~---~~~~~v~vv~itv-DPe---rDt-p~~ 121 (207)
T COG1999 50 FELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGE---GEGDDVQVVFITV-DPE---RDT-PEV 121 (207)
T ss_pred eeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhcc---ccCCCEEEEEEEE-CCC---CCC-HHH
Confidence 45778899999999999999999999999986 88888 9999999973 2367999999997 531 222 333
Q ss_pred HHHHHc---CCCceeeccccccChHHHHHHHHhCCCCC---------------CceEEEECCCCcEEcc
Q 008311 406 FETLQS---SMPWYTVYHPTLIDRAVIRYVKDVWHFKN---------------KPILVVLDPQGRVVSP 456 (570)
Q Consensus 406 F~~~~~---~MPW~aV~fP~l~D~~~~~~L~~~y~V~~---------------IPtlVVLDpqGkVv~~ 456 (570)
.++|.. .-+|..+.- +.+..+.+.+.|++-. -...+++|++|++...
T Consensus 122 lk~Y~~~~~~~~~~~ltg----~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~ 186 (207)
T COG1999 122 LKKYAELNFDPRWIGLTG----TPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGT 186 (207)
T ss_pred HHHHhcccCCCCeeeeeC----CHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEE
Confidence 344433 223666654 2345677777777652 2345788888888754
No 110
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.06 E-value=1.2e-05 Score=72.04 Aligned_cols=68 Identities=10% Similarity=0.204 Sum_probs=49.7
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
.++.|+++||++||+||+..- |.++-+++. ++.++-|.+ ++
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--------~i~f~~Vd~--------~~--------------------- 63 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL--------ETKFIKVNA--------EK--------------------- 63 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC--------CCEEEEEEc--------cc---------------------
Confidence 357999999999999999776 777776652 355555542 11
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
...+.+.|+++++|+++++. +|+++.+
T Consensus 64 ------~~~l~~~~~v~~vPt~l~fk-~G~~v~~ 90 (113)
T cd02989 64 ------APFLVEKLNIKVLPTVILFK-NGKTVDR 90 (113)
T ss_pred ------CHHHHHHCCCccCCEEEEEE-CCEEEEE
Confidence 12367789999999998887 7777753
No 111
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.04 E-value=1.3e-05 Score=71.77 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=44.7
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
+++.|+++|||+||+||+... |.++-.++ +.++++.|.+ |+.
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--------~~i~~~~vd~--------d~~-------------------- 64 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS--------DKLKLEIYDF--------DED-------------------- 64 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc--------CceEEEEEeC--------CcC--------------------
Confidence 355689999999999999765 66665443 2466777764 110
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCC
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQ 450 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpq 450 (570)
..+.+.|+++++|++++++..
T Consensus 65 -------~~l~~~~~v~~vPt~~i~~~g 85 (113)
T cd02975 65 -------KEKAEKYGVERVPTTIFLQDG 85 (113)
T ss_pred -------HHHHHHcCCCcCCEEEEEeCC
Confidence 125677999999999999753
No 112
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.02 E-value=3.1e-05 Score=74.91 Aligned_cols=87 Identities=15% Similarity=0.063 Sum_probs=56.9
Q ss_pred CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311 346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL 423 (570)
Q Consensus 346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l 423 (570)
+++|+|+|||+||+||+... |.++-+++. .+.++-|.+ ++
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--------~vkF~kVd~--------d~---------------------- 124 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--------AVKFCKIRA--------SA---------------------- 124 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC--------CeEEEEEec--------cc----------------------
Confidence 46999999999999999776 777766652 233443332 10
Q ss_pred cChHHHHHHHHhCCCCCCceEEEECCCCcEEccc-cchhHhhhcCCCCCCCchhHHHHhh
Q 008311 424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPN-ALHMMWIWGSNAFPFTSLREEALWK 482 (570)
Q Consensus 424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~n-a~~~I~~~G~~aFPFt~~~~e~L~~ 482 (570)
. .+...|+++++||++++- +|+++.+- +. ...|+. -|+..+.|..+.
T Consensus 125 -----~-~l~~~f~v~~vPTlllyk-~G~~v~~~vG~---~~~~g~--~f~~~~le~~L~ 172 (175)
T cd02987 125 -----T-GASDEFDTDALPALLVYK-GGELIGNFVRV---TEDLGE--DFDAEDLESFLV 172 (175)
T ss_pred -----h-hhHHhCCCCCCCEEEEEE-CCEEEEEEech---HHhcCC--CCCHHHHHHHHH
Confidence 0 245568999999998886 68887642 22 233544 566666666654
No 113
>PTZ00102 disulphide isomerase; Provisional
Probab=98.02 E-value=5.6e-05 Score=82.36 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=41.4
Q ss_pred cCCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 504 KEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 504 ~egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
..++.+.+|++ +++-.+++.+.+++++++-+.++=.+++..++-...+.+.++....|++++
T Consensus 247 ~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i 308 (477)
T PTZ00102 247 SSGKDLVWFCG-TTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLLIEEFPGLAY 308 (477)
T ss_pred cCCccEEEEec-CHHHHHHHHHHHHHHHHhccCceEEEEEechhcchhHHHhcCcccCceEEE
Confidence 45555555554 455567788888888887666655566655554445677777777888775
No 114
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.01 E-value=1.7e-05 Score=71.70 Aligned_cols=69 Identities=12% Similarity=0.179 Sum_probs=52.7
Q ss_pred CCCEEEEEEecCC--CHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecc
Q 008311 345 RRKNVLLLISDLD--ISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYH 420 (570)
Q Consensus 345 kGKvVlL~FwAsW--CpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~f 420 (570)
.|.+++|+|||.| ||+|+... |.++-+++. +.+.++-|.+ |+.
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~-------~~v~f~kVdi--------d~~------------------ 72 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP-------GRFRAAVVGR--------ADE------------------ 72 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC-------CcEEEEEEEC--------CCC------------------
Confidence 5678899999997 99999988 888888874 2466666664 110
Q ss_pred ccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 421 PTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 421 P~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
..++.+|+|+++||++++. +|+++..
T Consensus 73 ---------~~la~~f~V~sIPTli~fk-dGk~v~~ 98 (111)
T cd02965 73 ---------QALAARFGVLRTPALLFFR-DGRYVGV 98 (111)
T ss_pred ---------HHHHHHcCCCcCCEEEEEE-CCEEEEE
Confidence 1467789999999998886 6888764
No 115
>PTZ00102 disulphide isomerase; Provisional
Probab=97.95 E-value=1.6e-05 Score=86.63 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=50.8
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
.||.|+|+|||+||++|+.+. +.++.+++++ ...+.+..|.. +..
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~-----~~~v~~~~id~--------~~~-------------------- 420 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD-----NDSIIVAKMNG--------TAN-------------------- 420 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc-----CCcEEEEEEEC--------CCC--------------------
Confidence 589999999999999999988 8888777752 23465666653 111
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcE
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRV 453 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkV 453 (570)
+ .+.+.|+++++|+++++++.|++
T Consensus 421 --~-----~~~~~~~v~~~Pt~~~~~~~~~~ 444 (477)
T PTZ00102 421 --E-----TPLEEFSWSAFPTILFVKAGERT 444 (477)
T ss_pred --c-----cchhcCCCcccCeEEEEECCCcc
Confidence 0 12345889999999999988775
No 116
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=3.4e-05 Score=73.11 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=80.0
Q ss_pred ccCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH-HHHHHHHHhhhhhccCCCeEEEEEecccCC--CCCChhhHHHHH
Q 008311 331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI-LEQIYNESRLHLTRQESHYEVVWIPIVDHF--IHWDDPTQKKFE 407 (570)
Q Consensus 331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~-L~~iY~elk~~~~k~~~~fEIV~IsIvD~s--~~w~D~~~~~F~ 407 (570)
+.+.+|+.+++++++||+||+-=-||-|+-=-+.- |+.+|+++++ ++|+|++.|-..-. ..-++++-..|=
T Consensus 10 ~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQYegLe~Ly~ky~~------~Gf~VLgFPcNQF~~QEPg~~eEI~~fC 83 (162)
T COG0386 10 VKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQYEGLEALYKKYKD------KGFEVLGFPCNQFGGQEPGSDEEIAKFC 83 (162)
T ss_pred eeccCCCCccHHHhCCcEEEEEEcccccCCcHhHHHHHHHHHHHhh------CCcEEEeccccccccCCCCCHHHHHHHH
Confidence 45678899999999999999999999998766766 9999999984 58999999963211 111233444453
Q ss_pred HHHcCCCceeeccccccCh--------HHHHHHHHhCC-------CCCCceEEEECCCCcEEcccc
Q 008311 408 TLQSSMPWYTVYHPTLIDR--------AVIRYVKDVWH-------FKNKPILVVLDPQGRVVSPNA 458 (570)
Q Consensus 408 ~~~~~MPW~aV~fP~l~D~--------~~~~~L~~~y~-------V~~IPtlVVLDpqGkVv~~na 458 (570)
... |.|.||.+--. +.-+.|++.-. ++.-=+-++||++|+||.+=+
T Consensus 84 ~~~-----YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 84 QLN-----YGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS 144 (162)
T ss_pred Hhc-----cCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence 322 67777753211 22345554432 222336789999999998743
No 117
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.90 E-value=3e-05 Score=85.57 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=50.3
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
+||+|+|+|||+||+||+... +.++.++++ +.++.++.|.+ |.+.
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~------~~~v~~~kVdv--------D~~~------------------- 416 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLA------GSGVKVAKFRA--------DGDQ------------------- 416 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhc------cCCcEEEEEEC--------CCCc-------------------
Confidence 689999999999999999988 888888885 23577777764 2110
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCC
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQ 450 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpq 450 (570)
.....+.|+|+++||++++...
T Consensus 417 ------~~~~~~~~~I~~~PTii~Fk~g 438 (463)
T TIGR00424 417 ------KEFAKQELQLGSFPTILFFPKH 438 (463)
T ss_pred ------cHHHHHHcCCCccceEEEEECC
Confidence 0123456899999999999654
No 118
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.89 E-value=4e-05 Score=71.12 Aligned_cols=92 Identities=11% Similarity=0.190 Sum_probs=58.3
Q ss_pred CCCEEEEEEecCCCHHhHHHH---H--HHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeec
Q 008311 345 RRKNVLLLISDLDISQEELSI---L--EQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVY 419 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~---L--~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~ 419 (570)
+||+|+|+|.+.||++|+..- + .++.+.++ ++| |.|.+.. +++| ...
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~-------~~F--v~V~l~~---d~td----------~~~------ 73 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ-------EDF--IMLNLVH---ETTD----------KNL------ 73 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH-------hCe--EEEEEEe---ccCC----------CCc------
Confidence 689999999999999999876 2 23333332 245 5555411 1111 000
Q ss_pred cccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhhh
Q 008311 420 HPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKE 483 (570)
Q Consensus 420 fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e 483 (570)
.. .+ .++|+++++|++|+++.+ +.--++...|-+.+.+.+.|...
T Consensus 74 -----~~---------~g-~~vPtivFld~~g~vi~~----i~Gy~~~~~~~y~~~~~~~~~~~ 118 (130)
T cd02960 74 -----SP---------DG-QYVPRIMFVDPSLTVRAD----ITGRYSNRLYTYEPADIPLLIEN 118 (130)
T ss_pred -----Cc---------cC-cccCeEEEECCCCCCccc----ccccccCccceeCcCcHHHHHHH
Confidence 00 11 368999999999999876 12235566777778877776643
No 119
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.88 E-value=5.3e-05 Score=61.80 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=46.9
Q ss_pred CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311 346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL 423 (570)
Q Consensus 346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l 423 (570)
+++++|+||++||++|+... +.++.++ . .++.++.|+. +.
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~-------~~~~~~~i~~--------~~---------------------- 51 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y-------PKVKFVKVDV--------DE---------------------- 51 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH-C-------CCceEEEEEC--------CC----------------------
Confidence 38999999999999999877 6666654 1 3577777764 11
Q ss_pred cChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311 424 IDRAVIRYVKDVWHFKNKPILVVLDPQGRVV 454 (570)
Q Consensus 424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv 454 (570)
...+.+.|++.+.|++++++ +|+++
T Consensus 52 -----~~~~~~~~~v~~~P~~~~~~-~g~~~ 76 (93)
T cd02947 52 -----NPELAEEYGVRSIPTFLFFK-NGKEV 76 (93)
T ss_pred -----ChhHHHhcCcccccEEEEEE-CCEEE
Confidence 01245568999999999885 56543
No 120
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.79 E-value=8.8e-05 Score=61.09 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=28.2
Q ss_pred EEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311 349 VLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI 391 (570)
Q Consensus 349 VlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI 391 (570)
.+..||++||++|+... |.++.++++ .+++++.|.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-------~~~~~~~vd~ 39 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG-------DAVEVEYINV 39 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc-------CceEEEEEeC
Confidence 45679999999999887 888888774 2477777764
No 121
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.74 E-value=0.00011 Score=65.27 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=49.4
Q ss_pred cCCCEEEEEEecCCCHHhHHHH---H--HHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311 344 LRRKNVLLLISDLDISQEELSI---L--EQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV 418 (570)
Q Consensus 344 LkGKvVlL~FwAsWCpPCr~e~---L--~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV 418 (570)
-+||.++|||.+.||++|+.+. | .++.+.++ ++|-.+.+.+ ++.
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~-------~~~v~~~~d~-------~~~----------------- 63 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR-------ENFIFWQCDI-------DSS----------------- 63 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH-------hCEEEEEecC-------CCc-----------------
Confidence 3689999999999999999875 2 34444443 1343333221 110
Q ss_pred ccccccChHHHHHHHHhCCCCCCceEEEECC-CCcEEcc
Q 008311 419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDP-QGRVVSP 456 (570)
Q Consensus 419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDp-qGkVv~~ 456 (570)
+ ...+.+.|++.+.|+++++|| +|+++.+
T Consensus 64 --------e-~~~~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 64 --------E-GQRFLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred --------c-HHHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence 1 123566788999999999999 8998874
No 122
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.71 E-value=0.00019 Score=70.54 Aligned_cols=87 Identities=20% Similarity=0.114 Sum_probs=57.2
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
++++|+|+|||+||+||+... |.++-.++. ...++-|.+ + .
T Consensus 101 ~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--------~vkFvkI~a--------d--~------------------- 143 (192)
T cd02988 101 KDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--------DTKFVKIIS--------T--Q------------------- 143 (192)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--------CCEEEEEEh--------H--H-------------------
Confidence 356999999999999999876 777777662 244444432 1 0
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhh
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWK 482 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~ 482 (570)
....|+++++||++++ .+|+++.+-. . ....|+. -|+....+.++.
T Consensus 144 ---------~~~~~~i~~lPTlliy-k~G~~v~~iv-G-~~~~gg~--~~~~~~lE~~L~ 189 (192)
T cd02988 144 ---------CIPNYPDKNLPTILVY-RNGDIVKQFI-G-LLEFGGM--NTTMEDLEWLLV 189 (192)
T ss_pred ---------hHhhCCCCCCCEEEEE-ECCEEEEEEe-C-chhhCCC--CCCHHHHHHHHH
Confidence 0235888999998888 5788775421 1 2234555 567777666654
No 123
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.61 E-value=0.00013 Score=78.65 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=47.3
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
++|+++|+|||+||++|+.+. +.++.+.++. .+.++.++-|.. ++.
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~----~~~~v~~~~vd~--------~~~-------------------- 64 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKK----KGPPIKLAKVDA--------TEE-------------------- 64 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhh----cCCceEEEEEEC--------CCc--------------------
Confidence 578999999999999999988 8888888753 122344444432 110
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCc
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGR 452 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGk 452 (570)
..+.+.|++.+.|+++++. +|+
T Consensus 65 -------~~l~~~~~i~~~Pt~~~~~-~g~ 86 (462)
T TIGR01130 65 -------KDLAQKYGVSGYPTLKIFR-NGE 86 (462)
T ss_pred -------HHHHHhCCCccccEEEEEe-CCc
Confidence 1356678999999888885 444
No 124
>PLN02309 5'-adenylylsulfate reductase
Probab=97.60 E-value=0.00018 Score=79.42 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=48.4
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
+||+|+|+|+|+||++|+... +.++.++++ +.++.|.-|.. |.+..
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~------~~~V~f~kVD~--------d~~~~------------------ 411 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLA------GSGVKVAKFRA--------DGDQK------------------ 411 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhc------cCCeEEEEEEC--------CCcch------------------
Confidence 689999999999999999887 888888774 23566666553 11100
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCC
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQG 451 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqG 451 (570)
....+.|+|+++||++++.+.+
T Consensus 412 -------~la~~~~~I~~~PTil~f~~g~ 433 (457)
T PLN02309 412 -------EFAKQELQLGSFPTILLFPKNS 433 (457)
T ss_pred -------HHHHhhCCCceeeEEEEEeCCC
Confidence 1123458999999999996543
No 125
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00038 Score=74.76 Aligned_cols=172 Identities=11% Similarity=0.037 Sum_probs=101.8
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
.++++++.|+|+||++|.... ..++-+.++ ....+.-| | .+
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~-------~~~~~~~v---d-------~~-------------------- 88 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALK-------GKVKIGAV---D-------CD-------------------- 88 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhc-------CceEEEEe---C-------ch--------------------
Confidence 457999999999999999987 666666663 12222222 2 11
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhhhc-Cc-cccccccCCCcccc
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEE-TW-RLELLVDGIDPLVL 500 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e~-~w-~~~ll~d~~d~~i~ 500 (570)
....+.+.|+|++.|++.++.+..+++...+..-.. ..+.|-....+.....- .= ..+|..+.++..+.
T Consensus 89 -----~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 159 (383)
T KOG0191|consen 89 -----EHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAE----SLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVK 159 (383)
T ss_pred -----hhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHH----HHHHHHHHhhccccccccCCceEEccccchhhhhh
Confidence 123477889999999999999886666544411110 01111111011000000 00 11222222222221
Q ss_pred ccccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC--CCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 501 DWIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA--RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 501 ~~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~--~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
...+..+|.+| +. |..||.+.+...++.+.. +..+++.-+..+ ........+++-..|++.+
T Consensus 160 -~~~~~~lv~f~--aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~-~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 160 -DSDADWLVEFY--APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT-VHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred -ccCcceEEEEe--ccccHHhhhcChHHHHHHHHhccCcceEEEeeccc-hHHHHhhhhcccCCceEEE
Confidence 23455666664 66 999999999999998753 578888888777 5667777777777777643
No 126
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.45 E-value=0.00048 Score=57.45 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=19.0
Q ss_pred EEEecCCCHHhHHHH--HHHHHHHH
Q 008311 351 LLISDLDISQEELSI--LEQIYNES 373 (570)
Q Consensus 351 L~FwAsWCpPCr~e~--L~~iY~el 373 (570)
+.|+|+|||+|+... +.++-+++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~ 27 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEEL 27 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHc
Confidence 678999999999887 77776665
No 127
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=97.42 E-value=0.00065 Score=69.30 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=78.8
Q ss_pred CCcccCCCCCeeeccccCCCEEEEEEecCCCHH-hHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311 328 QPLVDGSTKRRVNIEVLRRKNVLLLISDLDISQ-EELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK 404 (570)
Q Consensus 328 ~pl~~g~~G~~Vsls~LkGKvVlL~FwAsWCpP-Cr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~ 404 (570)
...+.+.+|+.+.-.+|+||.+++||.-+-||. |=.|+ |.+.-+++.+. .+-...=|||++ |+. . | ..+
T Consensus 121 pF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~---~~~~~~PlFIsv-DPe--R-D-~~~ 192 (280)
T KOG2792|consen 121 PFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAK---PGLPPVPLFISV-DPE--R-D-SVE 192 (280)
T ss_pred ceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhcc---CCCCccceEEEe-Ccc--c-C-CHH
Confidence 566888999999999999999999999999986 66666 99999998652 233333589986 431 1 1 233
Q ss_pred HHHHHHcCCCc--eeeccccccChHHHHHHHHhCCCCCC--c-------------eEEEECCCCcEEccccc
Q 008311 405 KFETLQSSMPW--YTVYHPTLIDRAVIRYVKDVWHFKNK--P-------------ILVVLDPQGRVVSPNAL 459 (570)
Q Consensus 405 ~F~~~~~~MPW--~aV~fP~l~D~~~~~~L~~~y~V~~I--P-------------tlVVLDpqGkVv~~na~ 459 (570)
...+|.++..- +++.= -.+-++.+++.|+|--- | ..+++||+|+.+.--|+
T Consensus 193 ~~~eY~~eF~pkllGLTG----T~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~Gr 260 (280)
T KOG2792|consen 193 VVAEYVSEFHPKLLGLTG----TTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGR 260 (280)
T ss_pred HHHHHHHhcChhhhcccC----CHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcc
Confidence 34444443210 11111 11346678888876322 2 35799999998765433
No 128
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.39 E-value=0.00073 Score=58.02 Aligned_cols=66 Identities=18% Similarity=0.319 Sum_probs=50.2
Q ss_pred CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311 346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL 423 (570)
Q Consensus 346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l 423 (570)
|++++++|++.||+||+... +.++-++++ +++.+++|.. |+ +
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~-------~~v~f~~vd~--------~~----~----------------- 55 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFK-------GKLLFVVVDA--------DD----F----------------- 55 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhC-------CeEEEEEEch--------Hh----h-----------------
Confidence 89999999999999999887 888888885 2578888763 21 1
Q ss_pred cChHHHHHHHHhCCCC--CCceEEEECC-CCcE
Q 008311 424 IDRAVIRYVKDVWHFK--NKPILVVLDP-QGRV 453 (570)
Q Consensus 424 ~D~~~~~~L~~~y~V~--~IPtlVVLDp-qGkV 453 (570)
..+.+.|+++ ++|++++++. +|+.
T Consensus 56 ------~~~~~~~~i~~~~~P~~~~~~~~~~~k 82 (103)
T cd02982 56 ------GRHLEYFGLKEEDLPVIAIINLSDGKK 82 (103)
T ss_pred ------HHHHHHcCCChhhCCEEEEEecccccc
Confidence 1145567888 8999999986 3543
No 129
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.37 E-value=0.00024 Score=64.74 Aligned_cols=63 Identities=11% Similarity=0.184 Sum_probs=48.2
Q ss_pred cccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCch----------hhhhhc----ccccccccccc
Q 008311 502 WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKR----------DKCGES----WQPLQLKSLVT 566 (570)
Q Consensus 502 ~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~----------e~~~~~----~~~~~~~~~~~ 566 (570)
.+..|+.+.+|||+. |||||.|.|.|.++.++ .+..++||..|... ..+++. .++..+|||+.
T Consensus 19 ~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~ 96 (122)
T TIGR01295 19 ALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVH 96 (122)
T ss_pred HHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEE
Confidence 356789999999999 99999999999999876 45779999998643 123333 34666888864
No 130
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.35 E-value=0.001 Score=55.88 Aligned_cols=22 Identities=14% Similarity=-0.192 Sum_probs=20.1
Q ss_pred cCCCEEEEEEecCCCHHhHHHH
Q 008311 344 LRRKNVLLLISDLDISQEELSI 365 (570)
Q Consensus 344 LkGKvVlL~FwAsWCpPCr~e~ 365 (570)
-+||+|+|+|+|.||++|+..-
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~ 36 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLE 36 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHH
T ss_pred HcCCCEEEEEECCCCHhHHHHH
Confidence 3689999999999999999876
No 131
>smart00594 UAS UAS domain.
Probab=97.32 E-value=0.00096 Score=60.49 Aligned_cols=68 Identities=16% Similarity=0.335 Sum_probs=46.0
Q ss_pred cCCCEEEEEEecCCCHHhHHHH-----HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311 344 LRRKNVLLLISDLDISQEELSI-----LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV 418 (570)
Q Consensus 344 LkGKvVlL~FwAsWCpPCr~e~-----L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV 418 (570)
=.||.++|||.+.||++|+.+- =.++.+-++ ++| |.+.. | +.+
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~-------~~f--v~~~~-d----v~~------------------ 72 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR-------ENF--IFWQV-D----VDT------------------ 72 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH-------cCE--EEEEe-c----CCC------------------
Confidence 4689999999999999999876 223444442 133 33332 1 011
Q ss_pred ccccccChHHHHHHHHhCCCCCCceEEEECCCC
Q 008311 419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQG 451 (570)
Q Consensus 419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqG 451 (570)
.++ ..+.+.|++.+.|+++++||+|
T Consensus 73 -------~eg-~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 73 -------SEG-QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred -------hhH-HHHHHhcCcCCCCEEEEEecCC
Confidence 111 3477789999999999999997
No 132
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.25 E-value=0.00071 Score=56.07 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=37.8
Q ss_pred eeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311 338 RVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI 391 (570)
Q Consensus 338 ~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI 391 (570)
......+++++++++||+.|||+|+..+ |.++.+++. ..+.++.+.+
T Consensus 24 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~i~~ 72 (127)
T COG0526 24 PLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYG-------GDVEVVAVNV 72 (127)
T ss_pred ceehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhc-------CCcEEEEEEC
Confidence 3444555699999999999999999998 889988874 1577888875
No 133
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.19 E-value=0.00093 Score=60.31 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=47.7
Q ss_pred cccCCeEEEEEecCC-CchHHHHHHHHHHHHhh---CCCCEEEEEEecCCchhhhhhccccc
Q 008311 502 WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANT---ARIPLEMVYVGKSTKRDKCGESWQPL 559 (570)
Q Consensus 502 ~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~---~~~~fEiv~Vs~d~~~e~~~~~~~~~ 559 (570)
....||++.|||.+. |++|++..+.+.++|++ .+..+++++|+-|.+++.+++.++..
T Consensus 14 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 75 (131)
T cd03009 14 SSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKM 75 (131)
T ss_pred HHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcC
Confidence 356899999999888 99999999999999865 33589999999999887766655443
No 134
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.14 E-value=0.0025 Score=46.89 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=41.9
Q ss_pred EEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccccChH
Q 008311 350 LLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRA 427 (570)
Q Consensus 350 lL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~D~~ 427 (570)
+++||+.||++|+... +.++ +.. ..+++++.+++.+ ......+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~-------~~~~~~~~~~~~~------~~~~~~~--------------------- 45 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALL-------NKGVKFEAVDVDE------DPALEKE--------------------- 45 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-Hhh-------CCCcEEEEEEcCC------ChHHhhH---------------------
Confidence 4789999999999998 6666 222 3579999998621 1111111
Q ss_pred HHHHHHHhCCCCCCceEEEECCC
Q 008311 428 VIRYVKDVWHFKNKPILVVLDPQ 450 (570)
Q Consensus 428 ~~~~L~~~y~V~~IPtlVVLDpq 450 (570)
...+++.+.|++++++++
T Consensus 46 -----~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 46 -----LKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred -----HHhCCCccccEEEEEeCC
Confidence 234677889999999876
No 135
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0023 Score=62.11 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=73.8
Q ss_pred cccCCCCCeeeccccCCCEEEEEEecCCC-HHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHH
Q 008311 330 LVDGSTKRRVNIEVLRRKNVLLLISDLDI-SQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKF 406 (570)
Q Consensus 330 l~~g~~G~~Vsls~LkGKvVlL~FwAsWC-pPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F 406 (570)
+++| .-+.+++++++||+|+|+|+...- --|-.++ +...+++++. -+-||+++|. | +.-..-+|
T Consensus 18 VVdG-~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~------~n~eVig~S~-D-----S~fshlAW 84 (196)
T KOG0852|consen 18 VVDG-EFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRK------LNTEVLGIST-D-----SVFSHLAW 84 (196)
T ss_pred EEcC-cceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHh------cCCeEEEEec-c-----chhhhhhH
Confidence 3455 446899999999999999987652 1244555 8888888873 4789999995 3 22233444
Q ss_pred HHH-HcCCCceeeccccccChHHHHHHHHhCCC----CCCc--eEEEECCCCcEEc
Q 008311 407 ETL-QSSMPWYTVYHPTLIDRAVIRYVKDVWHF----KNKP--ILVVLDPQGRVVS 455 (570)
Q Consensus 407 ~~~-~~~MPW~aV~fP~l~D~~~~~~L~~~y~V----~~IP--tlVVLDpqGkVv~ 455 (570)
.+. +++-..-.+..|.+.|. .+.|.+.||+ .|++ -+++||++|.+..
T Consensus 85 ~ntprk~gGlg~~~iPllsD~--~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~ 138 (196)
T KOG0852|consen 85 INTPRKQGGLGPLNIPLLSDL--NHEISRDYGVLKEDEGIALRGLFIIDPDGILRQ 138 (196)
T ss_pred hcCchhhCCcCccccceeecc--chhhHHhcCceecCCCcceeeeEEEccccceEE
Confidence 321 11111122335555564 5789999998 5666 5999999998854
No 136
>PHA02125 thioredoxin-like protein
Probab=97.05 E-value=0.002 Score=53.40 Aligned_cols=16 Identities=6% Similarity=-0.028 Sum_probs=14.1
Q ss_pred EEEEecCCCHHhHHHH
Q 008311 350 LLLISDLDISQEELSI 365 (570)
Q Consensus 350 lL~FwAsWCpPCr~e~ 365 (570)
+++|||+||+||+...
T Consensus 2 iv~f~a~wC~~Ck~~~ 17 (75)
T PHA02125 2 IYLFGAEWCANCKMVK 17 (75)
T ss_pred EEEEECCCCHhHHHHH
Confidence 6799999999999754
No 137
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.96 E-value=0.0029 Score=63.38 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=65.9
Q ss_pred eeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCce
Q 008311 339 VNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWY 416 (570)
Q Consensus 339 Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~ 416 (570)
--+..+.+++=+++|..+.|+.|..+. |..+-+++ +++|+.||+ |. ..+|
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---------g~~v~~vs~-DG----------------~~~~-- 164 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---------GFSVIPVSL-DG----------------RPIP-- 164 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---------CCEEEEEec-CC----------------CCCc--
Confidence 345677889999999999999999998 88887776 599999997 31 1112
Q ss_pred eeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhH
Q 008311 417 TVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMM 462 (570)
Q Consensus 417 aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I 462 (570)
.||.... ..-+.+++++...|++++++++++....-+.++|
T Consensus 165 --~fp~~~~---~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~ 205 (215)
T PF13728_consen 165 --SFPNPRP---DPGQAKRLGVKVTPALFLVNPNTKKWYPVSQGFM 205 (215)
T ss_pred --CCCCCCC---CHHHHHHcCCCcCCEEEEEECCCCeEEEEeeecC
Confidence 1221111 1236778999999999999999866665554444
No 138
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.93 E-value=0.003 Score=50.48 Aligned_cols=34 Identities=6% Similarity=-0.038 Sum_probs=22.0
Q ss_pred EEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311 350 LLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI 391 (570)
Q Consensus 350 lL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI 391 (570)
+..|+++|||+|+... |.++-+. ..++++..+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~--------~~~i~~~~id~ 38 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL--------NPNISAEMIDA 38 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh--------CCceEEEEEEc
Confidence 4679999999997765 4444221 23466666653
No 139
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.91 E-value=0.0019 Score=59.74 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=41.5
Q ss_pred ccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecc
Q 008311 343 VLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYH 420 (570)
Q Consensus 343 ~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~f 420 (570)
.+.++.-+|-|..+|||.|+.++ |.++-+.. .++++=+++. |+..+..+. |
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~--------p~i~~~~i~r--------d~~~el~~~-----------~ 90 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNVPVLAKIAEAN--------PNIEVRIILR--------DENKELMDQ-----------Y 90 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH---------TTEEEEEE-H--------HHHHHHTTT-----------T
T ss_pred hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC--------CCCeEEEEEe--------cCChhHHHH-----------H
Confidence 45667788899999999999999 88887754 1467766652 333221111 1
Q ss_pred ccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 421 PTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 421 P~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
+. .|.+.||+++++|.+|+++.+
T Consensus 91 -----------lt--~g~~~IP~~I~~d~~~~~lg~ 113 (129)
T PF14595_consen 91 -----------LT--NGGRSIPTFIFLDKDGKELGR 113 (129)
T ss_dssp -----------TT---SS--SSEEEEE-TT--EEEE
T ss_pred -----------Hh--CCCeecCEEEEEcCCCCEeEE
Confidence 11 577889999999999998764
No 140
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.89 E-value=0.002 Score=58.53 Aligned_cols=59 Identities=22% Similarity=0.239 Sum_probs=45.5
Q ss_pred cccccccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-C--CCEEEEEEecCCchhhhhhcc
Q 008311 498 LVLDWIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-R--IPLEMVYVGKSTKRDKCGESW 556 (570)
Q Consensus 498 ~i~~~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~--~~fEiv~Vs~d~~~e~~~~~~ 556 (570)
.++-...+||.+.|||.+. |++|++..+.+.++|++. + .++++++|+-|...+.+++++
T Consensus 9 ~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~ 71 (132)
T cd02964 9 VVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYF 71 (132)
T ss_pred cccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHH
Confidence 3433456899999999887 999999999999998752 2 479999999987665443333
No 141
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=96.86 E-value=0.0031 Score=56.80 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=47.9
Q ss_pred cCCCCCeeeccccCCCEEEEEEecCCCHHhHHHH-HHHHHHHHhhhhhccCCCeEEEEEecc
Q 008311 332 DGSTKRRVNIEVLRRKNVLLLISDLDISQEELSI-LEQIYNESRLHLTRQESHYEVVWIPIV 392 (570)
Q Consensus 332 ~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~-L~~iY~elk~~~~k~~~~fEIV~IsIv 392 (570)
.+.+|+.++++.+|||++|+.=-|+-|+-=.... |+++|+++++ ++|+|++.|-.
T Consensus 7 ~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~qy~~L~~L~~ky~~------~gl~ILaFPcn 62 (108)
T PF00255_consen 7 KDIDGKPVSLSKYKGKVLLIVNVASKCGYTKQYKQLNELYEKYKD------KGLEILAFPCN 62 (108)
T ss_dssp EBTTSSEEEGGGGTTSEEEEEEEESSSTTHHHHHHHHHHHHHHGG------GTEEEEEEEBS
T ss_pred eCCCCCEECHHHcCCCEEEEEecccccCCccccHHHHHHHHHHhc------CCeEEEeeehH
Confidence 4678899999999999999999999998777555 9999999974 47999999963
No 142
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.85 E-value=0.0038 Score=53.93 Aligned_cols=70 Identities=11% Similarity=0.003 Sum_probs=47.8
Q ss_pred ccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311 341 IEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV 418 (570)
Q Consensus 341 ls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV 418 (570)
++++++.+-+..|.+.||++|+.-- +.++-+++ .++++..+.+ + .
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~--------~~i~~~~vd~--------~----~------------- 53 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLN--------PNIEHEMIDG--------A----L------------- 53 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHC--------CCceEEEEEh--------H----h-------------
Confidence 3478999999999999999999654 44443322 2466665543 1 0
Q ss_pred ccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
+ ..+.++|+|.++|++++ +|+++..
T Consensus 54 -~---------~e~a~~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 54 -F---------QDEVEERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred -C---------HHHHHHcCCccCCEEEE---CCEEEEe
Confidence 0 12556799999999975 6887764
No 143
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.82 E-value=0.0033 Score=51.61 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=52.4
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311 508 YIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 508 ~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
.|-+|.+..|++|+...+.+.+++++.+..++++.|..+...+..++ ++...+|+++++|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~-~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAME-YGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHH-cCCccCCEEEECCE
Confidence 35678888899999999999999887777799999999888777765 78899999999885
No 144
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0075 Score=58.11 Aligned_cols=118 Identities=17% Similarity=0.190 Sum_probs=74.4
Q ss_pred ccCCCCCeeeccccCCCEEEEEEecCCCHHhH-HHH-HHHHHHHHhhhhhccCCCeEEEEEecccCC--CCCChhhHHHH
Q 008311 331 VDGSTKRRVNIEVLRRKNVLLLISDLDISQEE-LSI-LEQIYNESRLHLTRQESHYEVVWIPIVDHF--IHWDDPTQKKF 406 (570)
Q Consensus 331 ~~g~~G~~Vsls~LkGKvVlL~FwAsWCpPCr-~e~-L~~iY~elk~~~~k~~~~fEIV~IsIvD~s--~~w~D~~~~~F 406 (570)
..+.+|+.|+++.+|||+||+-=-||-|+-=. ... |..+|+++++ .+|+|+.-|-.--. .+-++++...|
T Consensus 19 ~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~------~Gl~ILaFPCNQFg~QEp~~n~Ei~~f 92 (171)
T KOG1651|consen 19 AKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKD------QGLEILAFPCNQFGNQEPGSNEEILNF 92 (171)
T ss_pred EecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhh------CCeEEEEeccccccCcCCCCcHHHHHH
Confidence 34678999999999999999999999998766 566 9999999973 58999999963110 11123344455
Q ss_pred HH--HHcCCCcee---eccccccChHHHHHHHHhCC------CCCCceEEEECCCCcEEcc
Q 008311 407 ET--LQSSMPWYT---VYHPTLIDRAVIRYVKDVWH------FKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 407 ~~--~~~~MPW~a---V~fP~l~D~~~~~~L~~~y~------V~~IPtlVVLDpqGkVv~~ 456 (570)
-. +....|-+. |.=. -..+.-+.|+..=+ |+.-=+-+++|++|+|+.+
T Consensus 93 ~~~r~~~~f~if~KidVNG~--~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~R 151 (171)
T KOG1651|consen 93 VKVRYGAEFPIFQKIDVNGD--NADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKR 151 (171)
T ss_pred HHhccCCCCccEeEEecCCC--CCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEe
Confidence 43 222222111 1000 01123345553221 2222367899999999876
No 145
>PHA02278 thioredoxin-like protein
Probab=96.80 E-value=0.0025 Score=56.59 Aligned_cols=63 Identities=8% Similarity=0.119 Sum_probs=52.1
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCch---hhhhhcccccccccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKR---DKCGESWQPLQLKSLVT 566 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~---e~~~~~~~~~~~~~~~~ 566 (570)
.+++.+.+||.|+ |+|||.+.|.+.+++++.+...+++.|.-|..+ +.+.+.+++.++||+++
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~ 78 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIG 78 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEE
Confidence 4789999999999 999999999999997663444667777777653 56888999999999975
No 146
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.78 E-value=0.0042 Score=61.56 Aligned_cols=67 Identities=7% Similarity=0.016 Sum_probs=40.6
Q ss_pred cCCCEEEEEEecCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311 344 LRRKNVLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL 423 (570)
Q Consensus 344 LkGKvVlL~FwAsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l 423 (570)
+++.++++.|||+||++|+... .+.+++.. . ..++.+..|.. +. +
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~~--~~l~~l~~---~-~~~i~~~~vD~--------~~------------------~--- 175 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYAV--LMAHKFAL---A-NDKILGEMIEA--------NE------------------N--- 175 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHHH--HHHHHHHH---h-cCceEEEEEeC--------CC------------------C---
Confidence 4555677779999999999644 23333332 1 12455554432 11 0
Q ss_pred cChHHHHHHHHhCCCCCCceEEEECCCCc
Q 008311 424 IDRAVIRYVKDVWHFKNKPILVVLDPQGR 452 (570)
Q Consensus 424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGk 452 (570)
..+.++|+|.++|++++. .+|+
T Consensus 176 ------~~~~~~~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 176 ------PDLAEKYGVMSVPKIVIN-KGVE 197 (215)
T ss_pred ------HHHHHHhCCccCCEEEEe-cCCE
Confidence 125567999999998875 4565
No 147
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.65 E-value=0.0041 Score=58.02 Aligned_cols=64 Identities=8% Similarity=0.046 Sum_probs=53.5
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCch-hhhhhcccccccccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKR-DKCGESWQPLQLKSLVT 566 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~-e~~~~~~~~~~~~~~~~ 566 (570)
...||.+.|||.+. |++|+.+.+.+.+++++.+..+.++.|.-|..+ ..+-+.+++-.+|++++
T Consensus 17 ~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~ 82 (142)
T cd02950 17 LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVF 82 (142)
T ss_pred HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEE
Confidence 46899999999998 999999999999999876667888988877654 35556788999999876
No 148
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.50 E-value=0.0059 Score=62.86 Aligned_cols=92 Identities=18% Similarity=0.193 Sum_probs=66.8
Q ss_pred eeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCce
Q 008311 339 VNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWY 416 (570)
Q Consensus 339 Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~ 416 (570)
-.+..+.+++=+++|..+.||.|..+. |+.+-+++ +++|+.||+ |. . .+|
T Consensus 143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---------gi~v~~VS~-DG-------~---------~~p-- 194 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---------GISVIPISV-DG-------T---------LIP-- 194 (256)
T ss_pred HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---------CCeEEEEec-CC-------C---------CCC--
Confidence 345677889999999999999999999 88888877 499999997 31 1 011
Q ss_pred eeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHh
Q 008311 417 TVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMW 463 (570)
Q Consensus 417 aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~ 463 (570)
.+|-+. .| .-+.+++|+...|++++++++++...+-|.++|.
T Consensus 195 ~fp~~~-~d----~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~G~iS 236 (256)
T TIGR02739 195 GLPNSR-SD----SGQAQHLGVKYFPALYLVNPKSQKMSPLAYGFIS 236 (256)
T ss_pred CCCCcc-CC----hHHHHhcCCccCceEEEEECCCCcEEEEeeccCC
Confidence 111111 13 2367889999999999999997766665555553
No 149
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.42 E-value=0.0062 Score=52.81 Aligned_cols=64 Identities=8% Similarity=0.035 Sum_probs=48.1
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHH---HHHHhhCCCCEEEEEEecCCc---hhhhhhcccccccccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAA---RSVANTARIPLEMVYVGKSTK---RDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l---~~vy~~~~~~fEiv~Vs~d~~---~e~~~~~~~~~~~~~~~~ 566 (570)
+.+||.+.|||++. |+||+.|.+.+ .++++..+..+.++.|.-+.+ ...+.+.+++-.+|++++
T Consensus 8 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 8 LAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999 99999999876 355544333788888876543 346667778888888765
No 150
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.38 E-value=0.009 Score=52.27 Aligned_cols=61 Identities=8% Similarity=0.022 Sum_probs=51.3
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCch--hhhhhcccccccccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKR--DKCGESWQPLQLKSLVT 566 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~--e~~~~~~~~~~~~~~~~ 566 (570)
.||.+.|+|.+. |++||.+.|.+.+++++. ..+.++.|..|... ..+.+.+++-++||+++
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 77 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLF 77 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEE
Confidence 489999999999 999999999999998876 56777888877654 36777789999999876
No 151
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0072 Score=61.69 Aligned_cols=33 Identities=9% Similarity=-0.062 Sum_probs=27.5
Q ss_pred cccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHh
Q 008311 342 EVLRRKNVLLLISDLDISQEELSI--LEQIYNESR 374 (570)
Q Consensus 342 s~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk 374 (570)
+.-.||.|++.|.|+||+||..-. +.++-++|.
T Consensus 17 s~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp 51 (288)
T KOG0908|consen 17 SAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP 51 (288)
T ss_pred hccCceEEEEEEEecccchHHhhhhHHHHhhhhCc
Confidence 344579999999999999999877 778888774
No 152
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.33 E-value=0.0098 Score=51.85 Aligned_cols=62 Identities=3% Similarity=-0.065 Sum_probs=50.2
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCC-CCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTAR-IPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~-~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
+..|+.+.|||.+. |++||.+.+.+.+++++.+ ..+.++.|..| ..+.-+.+++-..|++++
T Consensus 14 i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~~~~~~~~~v~~~Pt~~~ 77 (102)
T cd02948 14 LSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--TIDTLKRYRGKCEPTFLF 77 (102)
T ss_pred HccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--CHHHHHHcCCCcCcEEEE
Confidence 34688999999999 9999999999999988754 45788888888 334567778888898765
No 153
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.31 E-value=0.0077 Score=61.74 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=65.2
Q ss_pred eccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCcee
Q 008311 340 NIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYT 417 (570)
Q Consensus 340 sls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~a 417 (570)
-+..+.+++=+++|..+.||.|..+. |+.+-+++ +++|+.||+ |. . ..| .
T Consensus 137 ~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---------g~~v~~VS~-DG-------~---------~~p--~ 188 (248)
T PRK13703 137 AIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---------GLSVIPVSV-DG-------V---------INP--L 188 (248)
T ss_pred HHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---------CCeEEEEec-CC-------C---------CCC--C
Confidence 45677888999999999999999999 88888877 499999997 31 1 011 1
Q ss_pred eccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHh
Q 008311 418 VYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMW 463 (570)
Q Consensus 418 V~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~ 463 (570)
+|-+. .|. -..+.+++...|++++++++++-..+=+.++|.
T Consensus 189 fp~~~-~d~----gqa~~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS 229 (248)
T PRK13703 189 LPDSR-TDQ----GQAQRLGVKYFPALMLVDPKSGSVRPLSYGFIT 229 (248)
T ss_pred CCCCc-cCh----hHHHhcCCcccceEEEEECCCCcEEEEeeccCC
Confidence 11111 132 244789999999999999987666555555443
No 154
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.16 E-value=0.017 Score=52.95 Aligned_cols=79 Identities=13% Similarity=0.210 Sum_probs=43.2
Q ss_pred CCCEEEEEEecC-------CCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCc
Q 008311 345 RRKNVLLLISDL-------DISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPW 415 (570)
Q Consensus 345 kGKvVlL~FwAs-------WCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW 415 (570)
.|+.+.|+|.++ |||.|+.-. +.+.+.+.. ++.-+|.|.+ . ++..|+.- .-
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-------~~~~lv~v~V-------G--~r~~Wkdp--~n-- 77 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-------ENARLVYVEV-------G--DRPEWKDP--NN-- 77 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-------TTEEEEEEE------------HHHHC-T--TS--
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-------CCceEEEEEc-------C--CHHHhCCC--CC--
Confidence 466777777754 999999988 777776642 2456676664 1 22344320 00
Q ss_pred eeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 416 YTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 416 ~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
+| +--..|++++|||++-.+..++++..
T Consensus 78 ---~f----------R~~p~~~l~~IPTLi~~~~~~rL~e~ 105 (119)
T PF06110_consen 78 ---PF----------RTDPDLKLKGIPTLIRWETGERLVEE 105 (119)
T ss_dssp ---HH----------HH--CC---SSSEEEECTSS-EEEHH
T ss_pred ---Cc----------eEcceeeeeecceEEEECCCCccchh
Confidence 11 01125899999999999877776543
No 155
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=96.16 E-value=0.016 Score=49.16 Aligned_cols=61 Identities=5% Similarity=-0.050 Sum_probs=50.4
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
.|+.+.+||.++ |++|+.+.+.+.++++..+..+-++.|.-|... .+.+.+++..+|++++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~l~~~~~i~~~Pt~~~ 72 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP-QIAQQFGVQALPTVYL 72 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH-HHHHHcCCCCCCEEEE
Confidence 478999999999 999999999999999876556878888877755 4555688999999874
No 156
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.14 E-value=0.0079 Score=53.95 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=49.5
Q ss_pred cccCC-eEEEEEecCC-CchHHHHHHHHH---HHHhhCCCCEEEEEEecCCc------------hhhhhhcccccccccc
Q 008311 502 WIKEG-KYIFLYGGDD-VEWVRKFTTAAR---SVANTARIPLEMVYVGKSTK------------RDKCGESWQPLQLKSL 564 (570)
Q Consensus 502 ~~~eg-k~I~lYfgad-~~w~r~FT~~l~---~vy~~~~~~fEiv~Vs~d~~------------~e~~~~~~~~~~~~~~ 564 (570)
..++| |.+.|+|+++ |+||+.+.+.+. ++.+..+..|.++.|.-|.+ ...+.+.+++-.+|++
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~ 88 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTV 88 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence 35788 9999999999 999999998764 44433334788888887764 3567777888889986
Q ss_pred cc
Q 008311 565 VT 566 (570)
Q Consensus 565 ~~ 566 (570)
++
T Consensus 89 ~~ 90 (125)
T cd02951 89 IF 90 (125)
T ss_pred EE
Confidence 65
No 157
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=96.09 E-value=0.017 Score=52.52 Aligned_cols=61 Identities=10% Similarity=0.056 Sum_probs=52.5
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
.++.+-++|++. |+|||.+.|.+.+++.+-...+.++.|.-|... .+-+.+++.++||+++
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~-~la~~~~V~~iPTf~~ 74 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP-DFNKMYELYDPPTVMF 74 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH-HHHHHcCCCCCCEEEE
Confidence 577899999999 999999999999999886666889999999876 4667779999999875
No 158
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.07 E-value=0.012 Score=51.44 Aligned_cols=62 Identities=5% Similarity=0.090 Sum_probs=50.0
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
..||.+.++|.+. |++||.+.|.+.+++++.+ .+.++-|..++....+.+.+++.++||+.+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~~~~V~~~PT~~l 78 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLSRYGVVGFPTILL 78 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHHhcCCeecCEEEE
Confidence 5799999999999 9999999999999998754 356666655534556778889999998864
No 159
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=95.95 E-value=0.023 Score=47.98 Aligned_cols=60 Identities=8% Similarity=0.090 Sum_probs=50.9
Q ss_pred CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
++.+.+||.++ |+.|+.|.|.+.++++..+.++.++.|..+.. ....+.+++-..|++++
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-KELCKKYGVKSVPTIIF 77 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-HHHHHHTTCSSSSEEEE
T ss_pred CCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc-chhhhccCCCCCCEEEE
Confidence 78899999888 99999999999999987666999999999866 45567778888998764
No 160
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=95.90 E-value=0.016 Score=53.25 Aligned_cols=64 Identities=19% Similarity=0.103 Sum_probs=46.8
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHH---HHHHhhCCCCEEEEEEecCCchhhhhhc-------ccccccccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAA---RSVANTARIPLEMVYVGKSTKRDKCGES-------WQPLQLKSLVT 566 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l---~~vy~~~~~~fEiv~Vs~d~~~e~~~~~-------~~~~~~~~~~~ 566 (570)
..+||.|.|+|+++ |+|||.+-+.. .++.+....+|..|.|..++..+-.+++ ++.-+.|++++
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vf 86 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVF 86 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 46899999999999 99999986632 3454555668999999887754433323 45668998876
No 161
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=95.90 E-value=0.011 Score=53.44 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=42.2
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh--CCCCEEEEEEecCCchhhhhhcccccc--cccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT--ARIPLEMVYVGKSTKRDKCGESWQPLQ--LKSLVT 566 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~--~~~~fEiv~Vs~d~~~e~~~~~~~~~~--~~~~~~ 566 (570)
..+||.|.|+|+++ |+||+.+.+.+.+.... ...+|-++-|.. .++...+.++..+ +|++++
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~--~~~~~~~~~~~~g~~vPt~~f 82 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLED--DEEPKDEEFSPDGGYIPRILF 82 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecC--CCCchhhhcccCCCccceEEE
Confidence 45789999999999 99999999998886543 334555554444 3333333445544 888765
No 162
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=95.87 E-value=0.02 Score=47.52 Aligned_cols=63 Identities=6% Similarity=0.028 Sum_probs=50.9
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC--CCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA--RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~--~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
+.+++.+.++|.++ |++|+.|.+.+.++++.. +..+.++.|..++ ...+.+.+++-..|++++
T Consensus 12 i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 12 VKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-NNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred HhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-hHHHHHhCCCCCCCEEEE
Confidence 45666888888777 999999999999998765 6889999998776 456677788888898754
No 163
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=95.78 E-value=0.055 Score=42.69 Aligned_cols=16 Identities=0% Similarity=-0.226 Sum_probs=13.4
Q ss_pred EEEEecCCCHHhHHHH
Q 008311 350 LLLISDLDISQEELSI 365 (570)
Q Consensus 350 lL~FwAsWCpPCr~e~ 365 (570)
+..|+++|||+|+.-.
T Consensus 2 i~lf~~~~C~~C~~~~ 17 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAK 17 (74)
T ss_pred EEEEcCCCChhHHHHH
Confidence 3579999999999864
No 164
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.025 Score=54.74 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=69.7
Q ss_pred CcccCCCCCeeeccccCCC-EEEEEEecCC-CHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311 329 PLVDGSTKRRVNIEVLRRK-NVLLLISDLD-ISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK 404 (570)
Q Consensus 329 pl~~g~~G~~Vsls~LkGK-vVlL~FwAsW-CpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~ 404 (570)
..+.+.+|+.+++....|+ +|++||.--. -|.|-... +..-|+++|. .+.||+++|- | +-..++
T Consensus 72 ~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kk------a~aeV~GlS~-D-----~s~sqK 139 (211)
T KOG0855|consen 72 FTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKK------AGAEVIGLSG-D-----DSASQK 139 (211)
T ss_pred cccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhh------cCceEEeecc-C-----chHHHH
Confidence 4466889999999999985 7778777554 57788887 9999999972 5799999996 2 234567
Q ss_pred HHHHHHcCCCceeeccccccChHHHHHHHHhCCCCC-----Cc--eEEEECCCC
Q 008311 405 KFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKN-----KP--ILVVLDPQG 451 (570)
Q Consensus 405 ~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~-----IP--tlVVLDpqG 451 (570)
.|.. ..++|+. -+.|+ .+.+...||+.+ +| ..+++|..|
T Consensus 140 aF~s-KqnlPYh-----LLSDp--k~e~ik~lGa~k~p~gg~~~Rsh~if~kg~ 185 (211)
T KOG0855|consen 140 AFAS-KQNLPYH-----LLSDP--KNEVIKDLGAPKDPFGGLPGRSHYIFDKGG 185 (211)
T ss_pred Hhhh-hccCCee-----eecCc--chhHHHHhCCCCCCCCCcccceEEEEecCC
Confidence 7765 3445532 23344 345666677654 23 345555543
No 165
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=95.71 E-value=0.028 Score=46.24 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=23.1
Q ss_pred EEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311 351 LLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI 391 (570)
Q Consensus 351 L~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI 391 (570)
+.|+++|||+|+... |.+++ . ...|+++.|+.
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~--i-------~~~~~~~~v~~ 35 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLN--V-------KPAYEVVELDQ 35 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcC--C-------CCCCEEEEeeC
Confidence 569999999999987 55544 2 12488887763
No 166
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=95.71 E-value=0.026 Score=49.71 Aligned_cols=63 Identities=6% Similarity=0.085 Sum_probs=49.6
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCc-hhhhhhcccccccccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~ 566 (570)
..||.+.+.|.+. |++|+++.+.+.+++++. +..+.+..|..|.. ..-.++.+++-..||+.+
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILF 84 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEE
Confidence 4678888888888 999999999999998764 44699999988863 433445678888998863
No 167
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=95.71 E-value=0.031 Score=48.03 Aligned_cols=62 Identities=8% Similarity=0.063 Sum_probs=49.9
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
.++|.+.+||.+. |++|+.+.+.+.+++++.+..+.++.+..|...+ +.+.+++...|++++
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~-l~~~~~v~~vPt~~i 73 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE-IAEAAGIMGTPTVQF 73 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH-HHHHCCCeeccEEEE
Confidence 4788999999877 9999999999999998866678888888776554 445667788888765
No 168
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=95.69 E-value=0.03 Score=44.65 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=44.2
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
|-+|.+..|++|+...+.+.++... ...++...+.-++.++ ..+-++...+|+++++||
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~-~~~i~~~~id~~~~~~-l~~~~~i~~vPti~i~~~ 61 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL-NPNISAEMIDAAEFPD-LADEYGVMSVPAIVINGK 61 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh-CCceEEEEEEcccCHh-HHHHcCCcccCEEEECCE
Confidence 5577788899999999999988654 3346666665555544 455678889999999986
No 169
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=95.69 E-value=0.026 Score=48.16 Aligned_cols=61 Identities=3% Similarity=-0.004 Sum_probs=48.3
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
.++.+.+||.+. |++||+|.+.+.+++++....+.++.+..+... .+.+.+++-+.|++++
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ-SLAQQYGVRGFPTIKV 78 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH-HHHHHCCCCccCEEEE
Confidence 456678888888 999999999999998876667888888776554 4556778888998764
No 170
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=95.67 E-value=0.032 Score=48.04 Aligned_cols=63 Identities=14% Similarity=0.042 Sum_probs=51.9
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
+.+++.+.++|.+. |++|+++.|.+.+++++.+..+.+..|..|+..+ +.+-+++-..||+++
T Consensus 15 v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 15 VNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM-LCRSQGVNSYPSLYV 78 (101)
T ss_pred hcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH-HHHHcCCCccCEEEE
Confidence 45678899999888 9999999999999998877678889999987654 455678889999854
No 171
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.64 E-value=0.012 Score=46.24 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=47.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecC-CchhhhhhccccccccccccCCC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKS-TKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d-~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
|-+|+...|++|+.....| ++.|.++|.+-|+++ ..++.+++..+....|.+.++|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L----~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL----DEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH----HHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTE
T ss_pred cEEEEcCCCcCHHHHHHHH----HHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCE
Confidence 4578888899997766666 666999999999999 57778888789999999999985
No 172
>PRK10996 thioredoxin 2; Provisional
Probab=95.63 E-value=0.03 Score=51.96 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=52.6
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
+.+||.+.|||.++ |++|+.+.+.+.+++++.+..+.++.|..++.. ++.+.+++-..|++++
T Consensus 49 i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~-~l~~~~~V~~~Ptlii 112 (139)
T PRK10996 49 LQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER-ELSARFRIRSIPTIMI 112 (139)
T ss_pred HhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH-HHHHhcCCCccCEEEE
Confidence 45789999999999 999999999999999887777888778776554 5666778889999876
No 173
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=95.60 E-value=0.024 Score=51.89 Aligned_cols=62 Identities=16% Similarity=0.111 Sum_probs=51.4
Q ss_pred CCeEEEEEecC-------C-CchHHHHHHHHHHHHhhCCCCEEEEEEecCC------chhhhhhccccc-ccccccc
Q 008311 505 EGKYIFLYGGD-------D-VEWVRKFTTAARSVANTARIPLEMVYVGKST------KRDKCGESWQPL-QLKSLVT 566 (570)
Q Consensus 505 egk~I~lYfga-------d-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~------~~e~~~~~~~~~-~~~~~~~ 566 (570)
+|+.+.|+|.+ . |++||...|.+.+++.+...+..++.|.-|+ +...++..+++. .+||+++
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~ 96 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR 96 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence 58899999988 7 9999999999999988765556677777665 356888999998 9999875
No 174
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=95.56 E-value=0.031 Score=45.29 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=47.6
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
.+++.+.|||++. |++|+.+.+.+.++.+. ...+.++.+.-++.. ++.+.++.-..|++++
T Consensus 8 ~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~-~~~~~~~v~~~P~~~~ 69 (93)
T cd02947 8 KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENP-ELAEEYGVRSIPTFLF 69 (93)
T ss_pred hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCCh-hHHHhcCcccccEEEE
Confidence 3447777777777 99999999999999877 677888888777643 4566678888998776
No 175
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=95.53 E-value=0.024 Score=49.45 Aligned_cols=56 Identities=16% Similarity=0.158 Sum_probs=43.7
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQL 561 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~ 561 (570)
+||.+.|||-+. |++|++..+.+.+++++....+.++.++ |++.++.++.++..++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKHGL 76 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCC
Confidence 589888888665 9999999999999987655568888886 5666777776665554
No 176
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=95.53 E-value=0.028 Score=48.65 Aligned_cols=62 Identities=5% Similarity=-0.065 Sum_probs=51.0
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhcccccccccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~ 566 (570)
.|+.+.++|.+. |++|+++.+.+.++++..+..+.++.|..|.+ ...+.+.+++-+.|++++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 577788999888 99999999999999987666788888888773 345666788888998875
No 177
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.52 E-value=0.035 Score=46.23 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=44.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
|-+|+ ..|++|+..-+.+.++.++.+..++++-|. +.++ ..+ ++...+|+++++|+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~~~~-a~~-~~v~~vPti~i~G~ 58 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT--DMNE-ILE-AGVTATPGVAVDGE 58 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--CHHH-HHH-cCCCcCCEEEECCE
Confidence 55665 679999999999999998888888887776 3333 333 69999999999985
No 178
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=95.51 E-value=0.029 Score=47.69 Aligned_cols=62 Identities=6% Similarity=0.012 Sum_probs=50.7
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhCC--CCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTAR--IPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~--~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
.++.+.++|.+. |++||+|.+.+.++++..+ .++.++.+..+++...+.+.++.-..|++++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 456788888888 9999999999999997643 5788888887775567777788899999875
No 179
>PRK09381 trxA thioredoxin; Provisional
Probab=95.47 E-value=0.041 Score=47.98 Aligned_cols=61 Identities=7% Similarity=0.012 Sum_probs=50.1
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
.++.+.++|-+. |++|+.+.+.+.+++++.+..+.++.|..|+..+- .+.+++-..|++++
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~-~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT-APKYGIRGIPTLLL 81 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH-HHhCCCCcCCEEEE
Confidence 467788888666 99999999999999988666799999999877654 44578888998876
No 180
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=95.40 E-value=0.042 Score=47.39 Aligned_cols=61 Identities=5% Similarity=-0.128 Sum_probs=49.8
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
.++.+.++|.+. |++|+.+.|.+.+++++.+..+.+..|..+...+ +.+.+++-.+||+++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES-LCQQANIRAYPTIRL 79 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH-HHHHcCCCcccEEEE
Confidence 467889999888 9999999999999998766678888888887544 556678888898764
No 181
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=95.34 E-value=0.047 Score=49.29 Aligned_cols=64 Identities=8% Similarity=-0.043 Sum_probs=52.8
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
..+++.+.+.|-+. |++||.+.|.+.+++++.+..+.++-|..|...+..++.+++-.+||+.+
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~l 90 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHL 90 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEE
Confidence 46789999999999 99999999999999987666688888888777666656677888888754
No 182
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=95.26 E-value=0.036 Score=47.18 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=47.0
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCC---CCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTAR---IPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~---~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
.+++ +.++|.+. |++|+.+.|.+.+++++.+ ..+.++.|..+... .+.+.+++-.+|++++
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 15 AEGN-HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-ELCSEFQVRGYPTLLL 79 (102)
T ss_pred hcCC-EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-hhHhhcCCCcCCEEEE
Confidence 3444 78888888 9999999999999987643 37888888776654 5566678888998764
No 183
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.20 E-value=0.095 Score=56.52 Aligned_cols=60 Identities=5% Similarity=0.027 Sum_probs=46.9
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCC---CEEEEEEecCCchhhhhhcccccccccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARI---PLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~---~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
..++.+.+||.+. |++|+.|.|.+.++++..+. .+-++.+..+.+. +.. ++.-+.|++++
T Consensus 362 ~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--~~~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 362 DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--VPP-FEVEGFPTIKF 425 (462)
T ss_pred cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--cCC-CCccccCEEEE
Confidence 3589999999999 99999999999999876433 6888888776543 333 77778888765
No 184
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=95.15 E-value=0.047 Score=45.85 Aligned_cols=61 Identities=8% Similarity=0.034 Sum_probs=49.8
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
+++.+.|||.+. |++|+.|-+.+.+++++.+..+.++.|..++..+ +.+.+++...|++++
T Consensus 13 ~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~P~~~~ 74 (101)
T TIGR01068 13 SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD-IAAKYGIRSIPTLLL 74 (101)
T ss_pred cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH-HHHHcCCCcCCEEEE
Confidence 356788888777 9999999999999987767779999998876554 566778889999876
No 185
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=95.14 E-value=0.029 Score=47.77 Aligned_cols=64 Identities=11% Similarity=0.056 Sum_probs=47.7
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCC--CCEEEEEEecCCc-hhhhhhcccccccccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTAR--IPLEMVYVGKSTK-RDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~--~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~ 566 (570)
+.+++.+.++|.++ |++|+++.+.+.++++... ..+.++.+.-+.+ ...+.+.++.-..|++++
T Consensus 14 ~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 14 LKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred HhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 45678899999888 9999999999999986533 4455555555542 446667778888898864
No 186
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=95.13 E-value=0.035 Score=53.08 Aligned_cols=53 Identities=17% Similarity=0.070 Sum_probs=42.2
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPL 559 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~ 559 (570)
..||.+.|||.++ |++|+++.+.+.+++++ +++++.|+.+++.++.++.++..
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~ 114 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKEL 114 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHc
Confidence 4789999999888 99999999999998764 58999999876666555554433
No 187
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=95.09 E-value=0.048 Score=48.74 Aligned_cols=58 Identities=9% Similarity=-0.094 Sum_probs=46.1
Q ss_pred cccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccc
Q 008311 502 WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQL 561 (570)
Q Consensus 502 ~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~ 561 (570)
...+||.+.|||-+. |++|++..+.+.+++++. ++.++.|+.+++.+.+++.++...+
T Consensus 21 ~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~ 79 (127)
T cd03010 21 ADLKGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGN 79 (127)
T ss_pred HHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCC
Confidence 345799888888666 999999999999997664 3999999988887777776555444
No 188
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=95.06 E-value=0.048 Score=49.46 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=49.0
Q ss_pred CeEEEEEecC--CCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 506 GKYIFLYGGD--DVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 506 gk~I~lYfga--d~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
|+.|..|.+. .||+|+.+.|.+.+++++-+..+.++.|.-|+.. ++-..+++..+|||++
T Consensus 28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-~la~~f~V~sIPTli~ 89 (111)
T cd02965 28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-ALAARFGVLRTPALLF 89 (111)
T ss_pred CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-HHHHHcCCCcCCEEEE
Confidence 4444444444 2999999999999999987777888899888876 7888889999999975
No 189
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=95.05 E-value=0.046 Score=51.26 Aligned_cols=52 Identities=13% Similarity=-0.003 Sum_probs=42.6
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGES 555 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~ 555 (570)
.+||.+.|||-+. |++|+...+.+.+++++. +.++.++.|+.|++++.+++.
T Consensus 59 ~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~ 112 (173)
T PRK03147 59 LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNF 112 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHH
Confidence 5789998999777 999999999999999763 457999999998876654433
No 190
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=95.04 E-value=0.065 Score=48.88 Aligned_cols=61 Identities=10% Similarity=0.002 Sum_probs=51.7
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
++|.|-|-||++ |+||+...|.+.+++++-....-++-|.-|.-.+ +.+.++..+||++++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d-va~~y~I~amPtfvf 74 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV-YTQYFDISYIPSTIF 74 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH-HHHhcCceeCcEEEE
Confidence 689999999999 9999999999999998754337777787776555 888889999999874
No 191
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.04 E-value=0.051 Score=61.40 Aligned_cols=75 Identities=15% Similarity=0.055 Sum_probs=50.1
Q ss_pred CCCEEEEEEecCCCHHhHHHH---HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311 345 RRKNVLLLISDLDISQEELSI---LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP 421 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~---L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP 421 (570)
++|+|+|+|.|.||.-|+.+- +.+.....+ -.+ +|.+=. ||+..
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~------~~~--~vlLqa-----DvT~~-------------------- 519 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA------LQD--VVLLQA-----DVTAN-------------------- 519 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh------cCC--eEEEEe-----eecCC--------------------
Confidence 456999999999999999876 443333332 123 344432 23322
Q ss_pred cccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
| +.++.+-++|++-|.|+.++.+++|+-...
T Consensus 520 ---~-p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~ 550 (569)
T COG4232 520 ---D-PAITALLKRLGVFGVPTYLFFGPQGSEPEI 550 (569)
T ss_pred ---C-HHHHHHHHHcCCCCCCEEEEECCCCCcCcC
Confidence 2 234556677999999999999999976543
No 192
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=95.02 E-value=0.046 Score=47.50 Aligned_cols=63 Identities=5% Similarity=0.024 Sum_probs=48.1
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC---CCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA---RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~---~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
+.+++.+.|+|.+. |++||.+.|.+.+++++. +.++.+..+..+.. ..+.+.+++-..|++++
T Consensus 12 ~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~I~~~Pt~~l 78 (104)
T cd03000 12 VRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-SSIASEFGVRGYPTIKL 78 (104)
T ss_pred hccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-HhHHhhcCCccccEEEE
Confidence 34567888999888 999999999999998763 45677777766553 35566788888888754
No 193
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=95.01 E-value=0.068 Score=47.84 Aligned_cols=63 Identities=5% Similarity=0.116 Sum_probs=50.9
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccC
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTS 567 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~ 567 (570)
+..++.+-+||+++ |++|+.+-+.+.++.... ..++++.|..|... ...+.+++..+|++++-
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~-~l~~~~~v~~vPt~~i~ 82 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDK-EKAEKYGVERVPTTIFL 82 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCH-HHHHHcCCCcCCEEEEE
Confidence 34677788999887 999999999999998664 45788888887654 56677899999999883
No 194
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=94.92 E-value=0.045 Score=56.71 Aligned_cols=61 Identities=5% Similarity=0.004 Sum_probs=49.5
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCch----------hhhhhcccccccccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKR----------DKCGESWQPLQLKSLVT 566 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~----------e~~~~~~~~~~~~~~~~ 566 (570)
+.|+++.+||.+. |++|+.+.|.+.+++++.| +++++|+-|... ....+.+++..+|++++
T Consensus 164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred hcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 5688999989888 9999999999999988765 889999988642 23456678888888764
No 195
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=94.87 E-value=0.047 Score=44.95 Aligned_cols=58 Identities=10% Similarity=0.166 Sum_probs=43.1
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhh----hhhccccccccccccCCC
Q 008311 510 FLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDK----CGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 510 ~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~----~~~~~~~~~~~~~~~~~~ 569 (570)
-+|+...||+|++..+.|.+.+ ....++++-|..++..+. +.+..+...+|++.++|+
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~ 63 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGK 63 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCE
Confidence 4676666999999999888873 122399999998866554 444456678999999885
No 196
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.73 E-value=0.28 Score=55.56 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=76.5
Q ss_pred HHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhc-CCCCCCCchhHHHHhhhcCccccccccCCCccccccc--cCC
Q 008311 430 RYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWG-SNAFPFTSLREEALWKEETWRLELLVDGIDPLVLDWI--KEG 506 (570)
Q Consensus 430 ~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G-~~aFPFt~~~~e~L~~e~~w~~~ll~d~~d~~i~~~~--~eg 506 (570)
..+.+.|++..+|+.+++|.+|+-.. |.=+| +.++-|++- .+.|..-.+ -..+++..+.+.+ +++
T Consensus 409 ~~~~~~~~v~~~P~~~i~~~~~~~~~------i~f~g~P~G~Ef~s~-i~~i~~~~~-----~~~~l~~~~~~~i~~~~~ 476 (555)
T TIGR03143 409 PESETLPKITKLPTVALLDDDGNYTG------LKFHGVPSGHELNSF-ILALYNAAG-----PGQPLGEELLEKIKKITK 476 (555)
T ss_pred hhhHhhcCCCcCCEEEEEeCCCcccc------eEEEecCccHhHHHH-HHHHHHhcC-----CCCCCCHHHHHHHHhcCC
Confidence 45677899999999999987764211 22234 344555542 233332111 0012233322222 345
Q ss_pred e-EEEEEecCCCchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311 507 K-YIFLYGGDDVEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 507 k-~I~lYfgad~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
+ .|=+|-|-.|+.|.+-...+.+++.+. ++..||+-+..- . +..+-++++..|+++++|+
T Consensus 477 ~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~--~-~~~~~~~v~~vP~~~i~~~ 538 (555)
T TIGR03143 477 PVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF--P-DLKDEYGIMSVPAIVVDDQ 538 (555)
T ss_pred CeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc--H-HHHHhCCceecCEEEECCE
Confidence 5 477888999999987777777777664 677777766543 3 3444559999999999985
No 197
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=94.72 E-value=0.076 Score=45.11 Aligned_cols=60 Identities=3% Similarity=-0.010 Sum_probs=46.8
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhC-C-CCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTA-R-IPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~-~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
+++.+.|+|.+. |++|+.|.+.+.++++.. + .++.+..+..+..+ ....++.-+.|++++
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND--VPSEFVVDGFPTILF 79 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh--hhhhccCCCCCEEEE
Confidence 468888888877 999999999999998763 3 47888888887653 445556678888764
No 198
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=94.68 E-value=0.031 Score=48.65 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=46.1
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHH---HhhCCCCEEEEEEecCCch-------------------hhhhhcccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSV---ANTARIPLEMVYVGKSTKR-------------------DKCGESWQPLQ 560 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~v---y~~~~~~fEiv~Vs~d~~~-------------------e~~~~~~~~~~ 560 (570)
.+||++.+||++. |++|+.+.+.+.+. .+..+..+.++++.-+.++ .++.+.+++-+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 4789999999877 99999999999864 3334557999999998765 34667778888
Q ss_pred ccccccC
Q 008311 561 LKSLVTS 567 (570)
Q Consensus 561 ~~~~~~~ 567 (570)
-||+++-
T Consensus 83 tPt~~~~ 89 (112)
T PF13098_consen 83 TPTIVFL 89 (112)
T ss_dssp SSEEEEC
T ss_pred cCEEEEE
Confidence 8887753
No 199
>PTZ00051 thioredoxin; Provisional
Probab=94.66 E-value=0.059 Score=45.74 Aligned_cols=61 Identities=5% Similarity=0.015 Sum_probs=44.6
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
.+++.+.|||++. |++||.|.+.+.+++++.. ++-++.|..+. ...+.+.+++..+|++++
T Consensus 16 ~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 16 SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDE-LSEVAEKENITSMPTFKV 77 (98)
T ss_pred hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcc-hHHHHHHCCCceeeEEEE
Confidence 4678888999888 9999999999999987632 23333333332 346777789999999875
No 200
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=94.57 E-value=0.2 Score=48.51 Aligned_cols=79 Identities=13% Similarity=0.136 Sum_probs=37.3
Q ss_pred cCCCEEEEEEecCCCHHhHHHH-----HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311 344 LRRKNVLLLISDLDISQEELSI-----LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV 418 (570)
Q Consensus 344 LkGKvVlL~FwAsWCpPCr~e~-----L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV 418 (570)
-.+|+|+|.+..+||..|.... =.++-+-+.+ +| |-|=+ |+ |+. ...+..
T Consensus 35 ~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~-------~F--I~Vkv-Dr-----ee~-Pdid~~--------- 89 (163)
T PF03190_consen 35 KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-------NF--IPVKV-DR-----EER-PDIDKI--------- 89 (163)
T ss_dssp HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-------H---EEEEE-ET-----TT--HHHHHH---------
T ss_pred hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC-------CE--EEEEe-cc-----ccC-ccHHHH---------
Confidence 3589999999999999998654 1122222321 23 43332 32 111 111111
Q ss_pred ccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
.........|..|-|++|+++|+|+.+..
T Consensus 90 ---------y~~~~~~~~~~gGwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 90 ---------YMNAVQAMSGSGGWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp ---------HHHHHHHHHS---SSEEEEE-TTS-EEEE
T ss_pred ---------HHHHHHHhcCCCCCCceEEECCCCCeeee
Confidence 11122233477899999999999999863
No 201
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=94.54 E-value=0.1 Score=44.10 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=46.3
Q ss_pred CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
++.+.++|.+. |++||.+.+.+.+++++...++-++-|..+... .+.+.++.-.+|++++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~-~~~~~~~i~~~Pt~~~ 74 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP-EISEKFEITAVPTFVF 74 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH-HHHHhcCCccccEEEE
Confidence 68888888888 999999999999998775556777777655433 4556678888888764
No 202
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=94.52 E-value=0.06 Score=52.12 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=43.0
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQ 560 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~ 560 (570)
..||.+.|+|-+. |++|++..|.+.++++. .++++.|+-|++.+.+++.++..+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~ 120 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELG 120 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcC
Confidence 3799999999777 99999999999998653 689999998777676665554443
No 203
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.1 Score=50.20 Aligned_cols=87 Identities=14% Similarity=0.242 Sum_probs=60.5
Q ss_pred cCCCEEEEEEecCCCHHhHHHH-----HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311 344 LRRKNVLLLISDLDISQEELSI-----LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV 418 (570)
Q Consensus 344 LkGKvVlL~FwAsWCpPCr~e~-----L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV 418 (570)
-+||+.+|.|....|+.|.++= -.++.+-++ +.|-++.+.+.+ ...-.|..--..
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk-------~hf~~~~l~i~~-------skpv~f~~g~ke------ 99 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK-------EHFSAYYLNISY-------SKPVLFKVGDKE------ 99 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh-------hCeEEEEEEecc-------CcceEeecCcee------
Confidence 4789999999999999999876 455665564 358889888732 111111110000
Q ss_pred ccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
.....+.|++.|+|++.|+.|+.|.+|+-+-.
T Consensus 100 ------e~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 100 ------EKMSTEELAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred ------eeecHHHHHHHhccccCceEEEEcCCCCEEEe
Confidence 01123579999999999999999999988753
No 204
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=94.35 E-value=0.086 Score=46.75 Aligned_cols=60 Identities=10% Similarity=0.053 Sum_probs=49.6
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhccccccccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGESWQPLQLKSLV 565 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~ 565 (570)
.|+.+.++|-+. |++|+.+.|.+.+++++. +.++.+..|..|... .+.+.+++-+.|+++
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~-~l~~~~~V~~~Pt~~ 84 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER-RLARKLGAHSVPAIV 84 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH-HHHHHcCCccCCEEE
Confidence 689999999888 999999999999999874 346888888877654 455668899999887
No 205
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=94.27 E-value=0.072 Score=44.97 Aligned_cols=62 Identities=5% Similarity=0.067 Sum_probs=47.2
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCC--CEEEEEEecCCchhhhhhccccccccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARI--PLEMVYVGKSTKRDKCGESWQPLQLKSLV 565 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~--~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~ 565 (570)
+.+++.+.|+|.+. |+.||+|.+.+.++++..+. ++-++.+..+... .+.+.++.-.+|++.
T Consensus 10 ~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 10 VLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK-DLASRFGVSGFPTIK 74 (102)
T ss_pred hccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH-HHHHhCCCCcCCEEE
Confidence 34789999999888 99999999999998866332 5777776666544 455567888999884
No 206
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=94.19 E-value=0.11 Score=42.76 Aligned_cols=57 Identities=9% Similarity=0.178 Sum_probs=43.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCch----hhhhhccccccccccccCCC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR----DKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~----e~~~~~~~~~~~~~~~~~~~ 569 (570)
|-+|+...||+|+.....|.+. +.+++.+.|..+... +.+++..+...+|.+.++|+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKEL----GVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHc----CCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCE
Confidence 5577777799998777777655 779999999998763 34666667788999888874
No 207
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=94.10 E-value=0.11 Score=46.75 Aligned_cols=58 Identities=9% Similarity=-0.099 Sum_probs=44.9
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEec-----CCchhhhhhccccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGK-----STKRDKCGESWQPLQL 561 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~-----d~~~e~~~~~~~~~~~ 561 (570)
..||.+.|||-+. |++|+.-.+.|.++|++. +..++++.|+. +++.+.+++.++.-++
T Consensus 21 ~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~ 85 (126)
T cd03012 21 LRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGI 85 (126)
T ss_pred hCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCC
Confidence 4789888888666 999999999999999874 46899999975 3456667666654333
No 208
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.06 E-value=0.093 Score=43.81 Aligned_cols=61 Identities=8% Similarity=0.163 Sum_probs=48.2
Q ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311 505 EGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 505 egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
+..-|-||....|++|++= +++.++.|+++|.+-|+++...+.+++......+|.+.++|+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~a----k~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~ 66 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKA----KATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGK 66 (79)
T ss_pred CCCCEEEEECCCCHhHHHH----HHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCE
Confidence 4556889999999999654 444456699999999998877767776667788999998885
No 209
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=94.01 E-value=0.12 Score=46.24 Aligned_cols=62 Identities=8% Similarity=-0.035 Sum_probs=49.2
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
+.+++.+.+||.++ |++|+.+.+.+.+++++.. ++.++.|..|+..+ +.+.+++..+||+++
T Consensus 19 i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~-l~~~~~v~~vPt~l~ 81 (113)
T cd02989 19 VKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPF-LVEKLNIKVLPTVIL 81 (113)
T ss_pred HhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHH-HHHHCCCccCCEEEE
Confidence 34567888888877 9999999999999987643 36778888887664 556678899999875
No 210
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=94.01 E-value=0.15 Score=44.55 Aligned_cols=63 Identities=6% Similarity=0.038 Sum_probs=49.9
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC------CCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA------RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~------~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
+.+++.+.++|.+. |++|++|.|.+.++++.. +..+.+..|..|... .+.+-+++-+.|++.+
T Consensus 15 i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~-~l~~~~~v~~~Ptl~~ 84 (108)
T cd02996 15 LQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES-DIADRYRINKYPTLKL 84 (108)
T ss_pred HhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH-HHHHhCCCCcCCEEEE
Confidence 45678899999888 999999999999888641 135888888888765 4666778889998864
No 211
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=94.00 E-value=0.13 Score=43.26 Aligned_cols=46 Identities=15% Similarity=0.015 Sum_probs=37.8
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTK 548 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~ 548 (570)
...||++.++|.+. |++|+.+.+.+.++.++. +.++.++.|+.|..
T Consensus 16 ~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 16 DLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred HcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 34588888888776 999999999999998764 36788999998875
No 212
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=93.98 E-value=0.037 Score=46.39 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=44.2
Q ss_pred cccCCeEEEEEecCC-CchHHHHHHHH---HHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 502 WIKEGKYIFLYGGDD-VEWVRKFTTAA---RSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 502 ~~~egk~I~lYfgad-~~w~r~FT~~l---~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
.-.+||.|.+|||++ |+||+.|...+ .++.+....+|-.+.|..++++...+-.. -..|++++
T Consensus 13 A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~--~~~P~~~~ 79 (82)
T PF13899_consen 13 AKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR--QGYPTFFF 79 (82)
T ss_dssp HHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH--CSSSEEEE
T ss_pred HHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC--ccCCEEEE
Confidence 347899999999999 99999998765 33333345789999988877665442111 33777654
No 213
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=93.90 E-value=0.09 Score=47.54 Aligned_cols=58 Identities=9% Similarity=0.054 Sum_probs=44.6
Q ss_pred ccCCeEEEEEecCC-Cch-HHHHHHHHHHHHhhCC----CCEEEEEEecCCc---hhhhhhcccccc
Q 008311 503 IKEGKYIFLYGGDD-VEW-VRKFTTAARSVANTAR----IPLEMVYVGKSTK---RDKCGESWQPLQ 560 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w-~r~FT~~l~~vy~~~~----~~fEiv~Vs~d~~---~e~~~~~~~~~~ 560 (570)
-..||++.|+|.+. |++ |+.-.+.+.+++++.+ .++++++|+.|.. .+.++++++..+
T Consensus 19 ~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~ 85 (142)
T cd02968 19 DLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFG 85 (142)
T ss_pred HhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34789888888666 998 9999999999987633 3699999998753 466666666553
No 214
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=93.80 E-value=0.14 Score=45.34 Aligned_cols=58 Identities=9% Similarity=0.020 Sum_probs=46.8
Q ss_pred CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
++.+.++|.+. |++|+.+.+.+.+++++.. .+..+.|..++. .+.+.+++-.+|++++
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~--~l~~~~~i~~~Pt~~~ 82 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA--FLVNYLDIKVLPTLLV 82 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh--HHHHhcCCCcCCEEEE
Confidence 57888888877 9999999999999987743 355677777765 7777888889999875
No 215
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.77 E-value=0.67 Score=47.49 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=55.4
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec--ccCC-C-----CCChhh-HHHHHHHHcCC
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI--VDHF-I-----HWDDPT-QKKFETLQSSM 413 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI--vD~s-~-----~w~D~~-~~~F~~~~~~M 413 (570)
.+|+++..|+...||.|+++- +.++.+. .+++|.++++ ...+ . -|...+ .+.|+.+....
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~---------g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~ 186 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS---------GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASG 186 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc---------CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhh
Confidence 578999999999999999987 5443221 2466766653 2110 0 011112 22333322211
Q ss_pred CceeeccccccChH------HHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311 414 PWYTVYHPTLIDRA------VIRYVKDVWHFKNKPILVVLDPQGRVV 454 (570)
Q Consensus 414 PW~aV~fP~l~D~~------~~~~L~~~y~V~~IPtlVVLDpqGkVv 454 (570)
.-..+..+.....+ ....+.+.+|++|.|++|+.|.+|++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~ 233 (251)
T PRK11657 187 GKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQ 233 (251)
T ss_pred hccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 11000110000111 123577889999999999999999863
No 216
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=93.58 E-value=0.18 Score=43.58 Aligned_cols=63 Identities=11% Similarity=0.009 Sum_probs=45.1
Q ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311 505 EGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 505 egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
+.-.|-+|.+..|+||+.--+.+.++....+ ++++..+..|...+ ..+-++++++|+++++|+
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e-~a~~~~V~~vPt~vidG~ 74 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQD-EVEERGIMSVPAIFLNGE 74 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHH-HHHHcCCccCCEEEECCE
Confidence 3346888888889999998888888876532 34444444444444 344678999999999986
No 217
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=93.48 E-value=0.13 Score=50.10 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=41.3
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQ 560 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~ 560 (570)
...||.+.|||.+. |++|++..|.+.+++++.+ +++++|+.| +.+..++.++..+
T Consensus 71 ~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~-~~~~~~~~~~~~~ 126 (189)
T TIGR02661 71 IAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDG-TPAEHRRFLKDHE 126 (189)
T ss_pred hcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCC-CHHHHHHHHHhcC
Confidence 45899999888777 9999999999999987643 678888854 4455555555443
No 218
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=93.32 E-value=0.14 Score=45.29 Aligned_cols=41 Identities=17% Similarity=0.091 Sum_probs=32.1
Q ss_pred cccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecC
Q 008311 502 WIKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKS 546 (570)
Q Consensus 502 ~~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d 546 (570)
....||.+.|||.+. |++|+.+.+.+.+++++ ++++.|+-|
T Consensus 16 ~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~----~~~i~i~~~ 57 (123)
T cd03011 16 ESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD----YPVVSVALR 57 (123)
T ss_pred HHhCCCEEEEEEECCcChhhhhhChHHHHHHhh----CCEEEEEcc
Confidence 346788888888777 99999999999999876 455555544
No 219
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=93.28 E-value=0.23 Score=47.25 Aligned_cols=44 Identities=7% Similarity=0.190 Sum_probs=34.1
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTK 548 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~ 548 (570)
..-+++.-++|-+. |+|||+..|.+.+++++.+ ++++.|+-|+.
T Consensus 47 ~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~ 91 (153)
T TIGR02738 47 ANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQ 91 (153)
T ss_pred hhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCC
Confidence 33445556667666 9999999999999998754 78889888764
No 220
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=93.26 E-value=0.14 Score=41.49 Aligned_cols=57 Identities=7% Similarity=0.100 Sum_probs=40.6
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhccccc-cccccccCCC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPL-QLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~-~~~~~~~~~~ 569 (570)
|-||+...|++|++--. +.++.++++|.+-|..+. ..+++.+..+.. ..|.++++|+
T Consensus 2 i~ly~~~~Cp~C~~ak~----~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKA----LLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHH----HHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCE
Confidence 56898888999966444 445569999999998762 223444444544 8999999885
No 221
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=93.25 E-value=0.16 Score=42.16 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=43.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
|-+ +|..|+-|...-..+.++.+..+.++|++-+ ...+++ .-++++..|+++++|+
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~-~~ygv~~vPalvIng~ 58 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEI-EKYGVMSVPALVINGK 58 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHH-HHTT-SSSSEEEETTE
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHH-HHcCCCCCCEEEECCE
Confidence 456 5777999998888888888877888888886 233344 7789999999999996
No 222
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=93.14 E-value=0.25 Score=47.03 Aligned_cols=61 Identities=7% Similarity=-0.042 Sum_probs=47.8
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhcccccc------cccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGESWQPLQ------LKSLVT 566 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~~~~~~------~~~~~~ 566 (570)
.++.+.++|.+. |++|+.+.|.+.+++++. +.++.++.|.-|+..+- .+.+++-. +||+++
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~l-a~~~~V~~~~~v~~~PT~il 114 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNV-AEKFRVSTSPLSKQLPTIIL 114 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHH-HHHcCceecCCcCCCCEEEE
Confidence 467888899888 999999999999999874 45699999998887654 44455555 788764
No 223
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.14 E-value=0.19 Score=40.86 Aligned_cols=58 Identities=12% Similarity=0.213 Sum_probs=46.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311 508 YIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 508 ~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
-|-||....||+|++ ++++-++.|++++.+-|.++...+.+++.-+....|.+.++|+
T Consensus 2 ~v~lys~~~Cp~C~~----ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~ 59 (72)
T cd03029 2 SVSLFTKPGCPFCAR----AKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGE 59 (72)
T ss_pred eEEEEECCCCHHHHH----HHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCE
Confidence 367898888999954 5555566799999999988776666766678889999999885
No 224
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=93.00 E-value=0.25 Score=42.34 Aligned_cols=61 Identities=8% Similarity=0.084 Sum_probs=46.7
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
.+|+. .++|.+. |++|+++.|.+.++++.. +..+.+..|..++..+ +.+.+++-..|++++
T Consensus 15 ~~~~~-lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~-~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 15 LEGEW-MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG-LSGRFFVTALPTIYH 77 (101)
T ss_pred hCCCE-EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh-HHHHcCCcccCEEEE
Confidence 35664 5888787 999999999999998763 4568888888776554 555667888888865
No 225
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=92.90 E-value=0.18 Score=41.12 Aligned_cols=55 Identities=13% Similarity=0.203 Sum_probs=41.5
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCch-hhhhhccccccccccccCCC
Q 008311 510 FLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR-DKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 510 ~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~-e~~~~~~~~~~~~~~~~~~~ 569 (570)
-+|+...|++|++ +++..++.|++||.+-|..+... +.+++ ++....|.++++|+
T Consensus 2 ~ly~~~~Cp~C~~----ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 2 TVYSKNNCVQCKM----TKKALEEHGIAFEEINIDEQPEAIDYVKA-QGFRQVPVIVADGD 57 (72)
T ss_pred EEEeCCCCHHHHH----HHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCcccCEEEECCC
Confidence 4899999999965 44444567999999999877633 34444 47778999999875
No 226
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=92.79 E-value=0.2 Score=39.48 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=40.9
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccccccccccCCC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~~~~ 569 (570)
|-+|++..|++|+.-.+.+. +.+..++.+-+..+.. .+++.+..+...+|++++.|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~----~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~ 59 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLT----SKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHK 59 (74)
T ss_pred EEEEcCCCChhHHHHHHHHH----HCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCE
Confidence 56888888999998665554 4577777666654432 234667788899999998874
No 227
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=92.69 E-value=0.5 Score=46.03 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=51.9
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccC--C-----CCCChhh-HHHHHHHHcCCC
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDH--F-----IHWDDPT-QKKFETLQSSMP 414 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~--s-----~~w~D~~-~~~F~~~~~~MP 414 (570)
.||+++..|+...||.|+.+. |.+ .. .+-.+.++.+|+... | .-|...+ .+.|.+.....+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~-----~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~ 146 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NA-----DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGK 146 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----cc-----CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCC
Confidence 488999999999999999987 544 11 122344455554321 0 0011111 233433322211
Q ss_pred c-eeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311 415 W-YTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVV 454 (570)
Q Consensus 415 W-~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv 454 (570)
- -....- ..+.+....+.+.+|+++.|++++- +|+++
T Consensus 147 ~~~~~~~~-~~~i~~~~~l~~~~gi~gtPtii~~--~G~~~ 184 (197)
T cd03020 147 VPPPAASC-DNPVAANLALGRQLGVNGTPTIVLA--DGRVV 184 (197)
T ss_pred CCCCcccc-CchHHHHHHHHHHcCCCcccEEEEC--CCeEe
Confidence 0 001100 0112234477889999999999843 47664
No 228
>PRK10638 glutaredoxin 3; Provisional
Probab=92.65 E-value=0.19 Score=42.17 Aligned_cols=58 Identities=7% Similarity=0.196 Sum_probs=45.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhccccccccccccCCC
Q 008311 508 YIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 508 ~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
.|-+|+...|++|+.- +++.++.+.+++.+-|..++ ..+.+.+.-.....|.+.++|+
T Consensus 3 ~v~ly~~~~Cp~C~~a----~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~ 61 (83)
T PRK10638 3 NVEIYTKATCPFCHRA----KALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQ 61 (83)
T ss_pred cEEEEECCCChhHHHH----HHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 3669998999999654 44445669999999998765 4566777777888999988885
No 229
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=92.38 E-value=0.26 Score=42.07 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=47.7
Q ss_pred CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccc--ccccccc
Q 008311 506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPL--QLKSLVT 566 (570)
Q Consensus 506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~--~~~~~~~ 566 (570)
|+.+.++|.+. |++|+.+.+.+.+++++-+..+-.+.|..|... ++.+.++.. ++|++++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~-~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG-RHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH-HHHHHcCCChhhCCEEEE
Confidence 66666666655 999999999999999987777888888887743 466677777 8898875
No 230
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=92.37 E-value=0.18 Score=41.54 Aligned_cols=57 Identities=9% Similarity=0.145 Sum_probs=43.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhccccccccccccCCC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
|-+|+...||+|+ .++++.++.|.++|.+-|..+. ..+++++..+...+|.++++|+
T Consensus 1 v~ly~~~~Cp~C~----~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCT----RAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDV 58 (79)
T ss_pred CEEEecCCChhHH----HHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 4588888899995 4555556679999999998764 3456666667889999999885
No 231
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=92.20 E-value=0.28 Score=39.47 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=40.4
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCch-hhhhhc-cccccccccccCCC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR-DKCGES-WQPLQLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~-e~~~~~-~~~~~~~~~~~~~~ 569 (570)
|-||+...|++|++.-+.|.+ .+..++.+=+.++... +.++.. .+...+|+++++|.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~----~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g 60 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDK----LGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADG 60 (77)
T ss_pred EEEEECCCChhHHHHHHHHHH----cCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCC
Confidence 568988889999987776654 4788887776655432 344444 37889999987553
No 232
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=0.28 Score=43.97 Aligned_cols=60 Identities=7% Similarity=0.022 Sum_probs=53.0
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
.+|.|-++|.+. |+|||.--|.+.+++.+-.. ...+-|.-|. -..+-+-+++..|||+++
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde-~~~~~~~~~V~~~PTf~f 80 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE-LEEVAKEFNVKAMPTFVF 80 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc-CHhHHHhcCceEeeEEEE
Confidence 369999999888 99999999999999877444 8888899998 888999999999999986
No 233
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=91.97 E-value=0.41 Score=34.75 Aligned_cols=57 Identities=9% Similarity=0.040 Sum_probs=43.6
Q ss_pred EEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhh--hccccccccccccCC
Q 008311 511 LYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCG--ESWQPLQLKSLVTSG 568 (570)
Q Consensus 511 lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~--~~~~~~~~~~~~~~~ 568 (570)
+|++..|++|+...+.+.+. ...+..++++.++.+...+..+ ........|++++.+
T Consensus 3 ~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 61 (69)
T cd01659 3 LFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFG 61 (69)
T ss_pred EEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEe
Confidence 45566699999999999988 5556677777777777666555 477888889888765
No 234
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=91.89 E-value=1.3 Score=34.69 Aligned_cols=15 Identities=0% Similarity=-0.099 Sum_probs=13.1
Q ss_pred EEEecCCCHHhHHHH
Q 008311 351 LLISDLDISQEELSI 365 (570)
Q Consensus 351 L~FwAsWCpPCr~e~ 365 (570)
+.|+..|||+|+...
T Consensus 2 ~vy~~~~C~~C~~~~ 16 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAK 16 (60)
T ss_dssp EEEESTTSHHHHHHH
T ss_pred EEEEcCCCcCHHHHH
Confidence 568999999999876
No 235
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=91.77 E-value=0.42 Score=46.35 Aligned_cols=58 Identities=7% Similarity=0.091 Sum_probs=45.8
Q ss_pred CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
++.|.++|.++ |++|+.+.+.+.+++++.. .+-.+.|..+.. .+-..+++..+|||++
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~--~l~~~f~v~~vPTlll 141 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT--GASDEFDTDALPALLV 141 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch--hhHHhCCCCCCCEEEE
Confidence 45888999888 9999999999999997643 344556655554 6777889999999875
No 236
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=0.31 Score=49.22 Aligned_cols=170 Identities=9% Similarity=0.111 Sum_probs=90.7
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
++|.++++|||.||.+|.+-. +..+-+..+ ...++.+ +. ..|.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----------~~~~~k~--------~a--~~~~--------------- 60 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----------NAQFLKL--------EA--EEFP--------------- 60 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----------hheeeee--------hh--hhhh---------------
Confidence 889999999999999999866 444433332 1344443 11 1221
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEE-C--CCCcEEccccchhHhhhcC---CCC-CCCchhHHHHhhhcCccccccccCC
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVL-D--PQGRVVSPNALHMMWIWGS---NAF-PFTSLREEALWKEETWRLELLVDGI 495 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVL-D--pqGkVv~~na~~~I~~~G~---~aF-PFt~~~~e~L~~e~~w~~~ll~d~~ 495 (570)
.+.+.+.+.+.|..+.+ . .-.++.+.+...++..+.. ... +........+.+..+=+.. + +
T Consensus 61 --------eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~---~-~ 128 (227)
T KOG0911|consen 61 --------EISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFLVSKVEKLAESGSASLGMGLSTTIRETQTTNET---D-L 128 (227)
T ss_pred --------HHHHHHHHhcCceeeeeecchhhhhhhccCcHHHHHHHHHhhhhcccccCCCCCcchhcccccchh---h-H
Confidence 24555666677776665 2 1234444444444443221 110 1111111111110000000 1 2
Q ss_pred CccccccccCCeEEEEEe-cCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccc-ccccccc
Q 008311 496 DPLVLDWIKEGKYIFLYG-GDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQP-LQLKSLV 565 (570)
Q Consensus 496 d~~i~~~~~egk~I~lYf-gad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~-~~~~~~~ 565 (570)
|-.+...+...+ +-||- |.--.|=-.|..+++.+-+..+.+|+.+=|..|.. +|+.++. .+|||++
T Consensus 129 ~~~l~~lv~a~~-v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~Dee---lRqglK~fSdWPTfP 196 (227)
T KOG0911|consen 129 DNRLEKLVKAKP-VMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEE---LRQGLKEFSDWPTFP 196 (227)
T ss_pred HHHHHHhcccCe-EEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHH---HHHHhhhhcCCCCcc
Confidence 223333334444 44444 55556666899999999999999999999988753 6665554 4677764
No 237
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=91.70 E-value=0.39 Score=42.92 Aligned_cols=62 Identities=10% Similarity=-0.002 Sum_probs=47.0
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhC---CCCEEEEEEecCC-chhhhhhcccccccccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTA---RIPLEMVYVGKST-KRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~---~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~ 566 (570)
.++.+.++|.+. |++|+.|.+.+.++++.. ...+.+..|..+. ....+.+.++.-..|++++
T Consensus 18 ~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 18 SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRY 84 (114)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEE
Confidence 347999999888 999999999999998752 2346666676543 3456777888888998875
No 238
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=91.55 E-value=1 Score=40.90 Aligned_cols=68 Identities=7% Similarity=0.028 Sum_probs=43.6
Q ss_pred cCCCEEEEEEecC----CCHHhHHHH-HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceee
Q 008311 344 LRRKNVLLLISDL----DISQEELSI-LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTV 418 (570)
Q Consensus 344 LkGKvVlL~FwAs----WCpPCr~e~-L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV 418 (570)
=.+|.+++||.+. ||..|+.-+ =.++-+-++ .+|-++..++ ...+
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln-------~~fv~w~~dv-------~~~e---------------- 64 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN-------TRMLFWACSV-------AKPE---------------- 64 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH-------cCEEEEEEec-------CChH----------------
Confidence 3689999999999 999997766 222222232 2463343332 1111
Q ss_pred ccccccChHHHHHHHHhCCCCCCceEEEECCCC
Q 008311 419 YHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQG 451 (570)
Q Consensus 419 ~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqG 451 (570)
+ ..++..+++++.|++++|++++
T Consensus 65 ---------g-~~la~~l~~~~~P~~~~l~~~~ 87 (116)
T cd02991 65 ---------G-YRVSQALRERTYPFLAMIMLKD 87 (116)
T ss_pred ---------H-HHHHHHhCCCCCCEEEEEEecC
Confidence 1 3467789999999999996443
No 239
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=91.12 E-value=0.39 Score=39.13 Aligned_cols=57 Identities=11% Similarity=0.092 Sum_probs=45.3
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccccccccccCCC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~~~~ 569 (570)
|-||+...|++|++ ++++-++.|+++|.+=|.++.+ .+.+++..+....|.+.++|+
T Consensus 3 v~ly~~~~C~~C~k----a~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTA----VRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEK 60 (73)
T ss_pred EEEEecCCChhHHH----HHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 55888888999954 5555566799999999988654 557887778888899999885
No 240
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=91.06 E-value=0.37 Score=54.50 Aligned_cols=41 Identities=10% Similarity=-0.062 Sum_probs=36.5
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEec
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGK 545 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~ 545 (570)
+||.+.|+|-+. |+||+...|.|.+++++. ..+++++.|+.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~ 97 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVAS 97 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEec
Confidence 799999999888 999999999999999864 46799999875
No 241
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=90.93 E-value=0.6 Score=37.54 Aligned_cols=16 Identities=0% Similarity=-0.207 Sum_probs=13.4
Q ss_pred EEEEecCCCHHhHHHH
Q 008311 350 LLLISDLDISQEELSI 365 (570)
Q Consensus 350 lL~FwAsWCpPCr~e~ 365 (570)
+..||++|||+|+...
T Consensus 2 v~ly~~~~C~~C~~~~ 17 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLM 17 (77)
T ss_pred EEEEECCCChhHHHHH
Confidence 3469999999999865
No 242
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=90.88 E-value=0.73 Score=43.60 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=47.9
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLV 565 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~ 565 (570)
+++.+-+-|+++ |+||+...|.|.+++++-+....++-|.-|... .+-+.++.-+.|+++
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~-dla~~y~I~~~~t~~ 82 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVP-DFNTMYELYDPCTVM 82 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCH-HHHHHcCccCCCcEE
Confidence 678899999999 999999999999999887767888888888655 455555666455444
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=0.45 Score=50.04 Aligned_cols=58 Identities=5% Similarity=0.008 Sum_probs=48.9
Q ss_pred eEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccc
Q 008311 507 KYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLV 565 (570)
Q Consensus 507 k~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~ 565 (570)
+-|-+||++. |++|+++||.|.++..+.++.|.++.|-.|.. ..|-..+++=++|+++
T Consensus 44 ~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~-p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 44 VPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE-PMVAAQFGVQSIPTVY 102 (304)
T ss_pred CCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc-hhHHHHhCcCcCCeEE
Confidence 4678899999 99999999999999999999999999998874 3566667777777754
No 244
>PHA02125 thioredoxin-like protein
Probab=90.58 E-value=0.4 Score=39.53 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=36.4
Q ss_pred EEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCC
Q 008311 511 LYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSG 568 (570)
Q Consensus 511 lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~ 568 (570)
+||++. |+||+.+-+.+.++ .++.+-|..|... .+.+.+++..+||++ .|
T Consensus 3 v~f~a~wC~~Ck~~~~~l~~~------~~~~~~vd~~~~~-~l~~~~~v~~~PT~~-~g 53 (75)
T PHA02125 3 YLFGAEWCANCKMVKPMLANV------EYTYVDVDTDEGV-ELTAKHHIRSLPTLV-NT 53 (75)
T ss_pred EEEECCCCHhHHHHHHHHHHH------hheEEeeeCCCCH-HHHHHcCCceeCeEE-CC
Confidence 455555 99999999988654 3566666665544 556667999999998 55
No 245
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=90.34 E-value=0.51 Score=36.77 Aligned_cols=57 Identities=11% Similarity=0.162 Sum_probs=42.5
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhccccccccccccCCC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
|-+|+...|++|+.--..|.+ .+.+++.+-+..+. ..+.+++.......|.+.++|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~----~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLES----LGIEFEEIDILEDGELREELKELSGWPTVPQIFINGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH----cCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 458888889999776666544 47888887777665 3456777777788999988875
No 246
>PLN02309 5'-adenylylsulfate reductase
Probab=90.26 E-value=0.62 Score=51.95 Aligned_cols=63 Identities=5% Similarity=0.040 Sum_probs=52.4
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecC-Cchhhhhhcccccccccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKS-TKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d-~~~e~~~~~~~~~~~~~~~~ 566 (570)
..|+.+.++|.+. |++||.+.+.+.+++++ .+..+.+.-|..| +..+-.++.+++-..||+++
T Consensus 363 ~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 363 NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILL 428 (457)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEE
Confidence 4789999999999 99999999999999877 4556888999888 55555555788889999875
No 247
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=90.23 E-value=0.44 Score=44.09 Aligned_cols=62 Identities=6% Similarity=0.062 Sum_probs=43.9
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccc--cccccccccC
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQ--PLQLKSLVTS 567 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~--~~~~~~~~~~ 567 (570)
..++-.+.++++ |+-|+.+.|.+.++++.. .++++-+++.|++.+.+.+++. .-.+|++++-
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~ 104 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKELMDQYLTNGGRSIPTFIFL 104 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChhHHHHHHhCCCeecCEEEEE
Confidence 445555556666 999999999999998874 3889999999999998888744 8889998875
No 248
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=90.12 E-value=0.61 Score=37.63 Aligned_cols=56 Identities=20% Similarity=0.121 Sum_probs=44.0
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccC-CC
Q 008311 510 FLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTS-GK 569 (570)
Q Consensus 510 ~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~-~~ 569 (570)
-||+...|++|++-.-.| ++.|.+||.+.|...+..+++.+..-.-.+|.|+++ |.
T Consensus 2 ~ly~~~~~p~~~rv~~~L----~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~ 58 (71)
T cd03060 2 ILYSFRRCPYAMRARMAL----LLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGT 58 (71)
T ss_pred EEEecCCCcHHHHHHHHH----HHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCc
Confidence 478888899996644433 556999999999887767788887777789999885 75
No 249
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=89.81 E-value=0.61 Score=39.22 Aligned_cols=61 Identities=7% Similarity=0.147 Sum_probs=45.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCC-chhhhhhccc--cccccccccCCC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKST-KRDKCGESWQ--PLQLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~-~~e~~~~~~~--~~~~~~~~~~~~ 569 (570)
|-+|+...|++|++=-..|.++..+ .+..+|.+-+..+. ..+.+.+..+ +...|.+.++|+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~ 67 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQK 67 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCE
Confidence 6788888899999888888887654 58888888888653 2334555444 478999999986
No 250
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=89.58 E-value=0.75 Score=36.09 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=40.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccccccccccCCC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~~~~ 569 (570)
|-+|+...|++|+.....+ ++.+.+++.+-+..+.. .+.+++.......|+++++|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l----~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~ 59 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFL----DERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDE 59 (73)
T ss_pred EEEEeCCCChhHHHHHHHH----HHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCE
Confidence 4578888899998755544 44688888888765432 345666667789999988774
No 251
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=89.58 E-value=2.3 Score=34.72 Aligned_cols=85 Identities=12% Similarity=-0.077 Sum_probs=46.5
Q ss_pred EEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCC--CChhhHHHHHHHHc-CCCceeeccccccC
Q 008311 351 LLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIH--WDDPTQKKFETLQS-SMPWYTVYHPTLID 425 (570)
Q Consensus 351 L~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~--w~D~~~~~F~~~~~-~MPW~aV~fP~l~D 425 (570)
..|+...||.|...- |.++-... ..++++++.++.-.... .+............ ...| .+ .+
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~ 68 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYAD-------DGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFE---AL---HE 68 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhhc-------CCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHH---HH---HH
Confidence 579999999999988 66655222 34688888876321100 01111111111111 0111 11 11
Q ss_pred hHHHHHHHHhCCCCCCceEEEEC
Q 008311 426 RAVIRYVKDVWHFKNKPILVVLD 448 (570)
Q Consensus 426 ~~~~~~L~~~y~V~~IPtlVVLD 448 (570)
.-....+.+.+|+.|.|++++-|
T Consensus 69 ~l~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 69 ALADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHHHHHcCCCCCCEEEECC
Confidence 11234677889999999999977
No 252
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=89.55 E-value=0.68 Score=35.34 Aligned_cols=55 Identities=16% Similarity=0.046 Sum_probs=42.3
Q ss_pred EEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhh-hhhccccccccccccCCC
Q 008311 511 LYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDK-CGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 511 lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~-~~~~~~~~~~~~~~~~~~ 569 (570)
||+...|++|+ +++.+.+..++++|.+.+..++..+. +++....-.+|.|..+|.
T Consensus 3 ly~~~~~~~~~----~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~ 58 (71)
T cd00570 3 LYYFPGSPRSL----RVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGL 58 (71)
T ss_pred EEeCCCCccHH----HHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCE
Confidence 67777799997 44445566699999999998765543 777778889999988874
No 253
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.46 E-value=0.68 Score=42.76 Aligned_cols=40 Identities=8% Similarity=0.087 Sum_probs=26.2
Q ss_pred CCCEEEEEEec--------CCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311 345 RRKNVLLLISD--------LDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI 391 (570)
Q Consensus 345 kGKvVlL~FwA--------sWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI 391 (570)
+||.+.++|.| +|||.|+.-. +.+..++. ..+..+|-|-+
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a-------p~~~~~v~v~V 73 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA-------PEDVHFVHVYV 73 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC-------CCceEEEEEEe
Confidence 56667777776 6999999877 44444432 34566666653
No 254
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=89.39 E-value=0.76 Score=46.54 Aligned_cols=60 Identities=10% Similarity=0.036 Sum_probs=47.6
Q ss_pred CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
++.+.++|.+. |++||.+.|.+.+++++.+..+.+..|..++.. .+.+-+++-+.|++++
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~-~l~~~~~I~~~PTl~~ 112 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL-NLAKRFAIKGYPTLLL 112 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH-HHHHHcCCCcCCEEEE
Confidence 56788889888 999999999999999876666777777666544 4566678888898764
No 255
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=89.39 E-value=3.7 Score=41.65 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=53.7
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEE--ecccCCC--------CCChh-hHHHHHHHHc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWI--PIVDHFI--------HWDDP-TQKKFETLQS 411 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~I--sIvD~s~--------~w~D~-~~~~F~~~~~ 411 (570)
.||+++..|+...||.|++.- |.++.+ .+++|.++ |+..... -|... ..+.|.+...
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----------~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~ 175 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----------LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMK 175 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----------CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHc
Confidence 578999999999999999986 444321 24666665 4311110 12221 2244444332
Q ss_pred CCCceeeccccc-cChHHHHHHHHhCCCCCCceEEEECCCCcEE
Q 008311 412 SMPWYTVYHPTL-IDRAVIRYVKDVWHFKNKPILVVLDPQGRVV 454 (570)
Q Consensus 412 ~MPW~aV~fP~l-~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv 454 (570)
.-+ ++-... .+.+....+.+.+||+|.|++++- +|+++
T Consensus 176 ~~~---~~~~~c~~~v~~~~~la~~lgi~gTPtiv~~--~G~~~ 214 (232)
T PRK10877 176 GKD---VSPASCDVDIADHYALGVQFGVQGTPAIVLS--NGTLV 214 (232)
T ss_pred CCC---CCcccccchHHHhHHHHHHcCCccccEEEEc--CCeEe
Confidence 211 110000 122345578899999999999853 67765
No 256
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=89.37 E-value=0.71 Score=51.82 Aligned_cols=31 Identities=13% Similarity=-0.062 Sum_probs=26.9
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhh
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRL 375 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~ 375 (570)
....|++-|.|.||+.|.+.. ..+.-..+++
T Consensus 41 ~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke 73 (493)
T KOG0190|consen 41 GHEFVLVEFYAPWCGHCKALAPEYEKAATELKE 73 (493)
T ss_pred cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhc
Confidence 347899999999999999988 8888888874
No 257
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=88.92 E-value=2 Score=39.36 Aligned_cols=20 Identities=5% Similarity=0.301 Sum_probs=17.2
Q ss_pred HHHHHhCCCC--CCceEEEECC
Q 008311 430 RYVKDVWHFK--NKPILVVLDP 449 (570)
Q Consensus 430 ~~L~~~y~V~--~IPtlVVLDp 449 (570)
+.|.++|+|+ +.||+.++..
T Consensus 68 ~~L~~~y~I~~~gyPTl~lF~~ 89 (116)
T cd03007 68 MELGERYKLDKESYPVIYLFHG 89 (116)
T ss_pred HHHHHHhCCCcCCCCEEEEEeC
Confidence 4588999999 9999998874
No 258
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=88.77 E-value=0.68 Score=41.68 Aligned_cols=58 Identities=17% Similarity=0.096 Sum_probs=42.6
Q ss_pred ccCCeEEEEEec--CCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhccccccc
Q 008311 503 IKEGKYIFLYGG--DDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQPLQL 561 (570)
Q Consensus 503 ~~egk~I~lYfg--ad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~~~~~ 561 (570)
...||.+-|+|. ..|++|+.=.+.+.+.+++ .+..+++|.|+.|.+ +.++++.+..++
T Consensus 20 ~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~-~~~~~~~~~~~~ 80 (140)
T cd03017 20 DLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSV-ESHAKFAEKYGL 80 (140)
T ss_pred HhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHhCC
Confidence 345888777774 4599999988888888865 345789999999865 566666655443
No 259
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=88.59 E-value=0.92 Score=50.69 Aligned_cols=63 Identities=3% Similarity=-0.008 Sum_probs=50.8
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEecCCch-hhhhhcccccccccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKR-DKCGESWQPLQLKSLVT 566 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~-e~~~~~~~~~~~~~~~~ 566 (570)
..++.+.++|.+. |++||.+.|.+.+++++. +..+.++.|.-|..+ +...+.+++-.+||+++
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF 434 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence 3789999999999 999999999999999873 445788888888654 34456778888998864
No 260
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=88.53 E-value=0.8 Score=42.73 Aligned_cols=62 Identities=10% Similarity=0.063 Sum_probs=39.3
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHH---HHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAAR---SVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~---~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
-.+||.|.|||++| |+||+.+....- ++.+....+|=+|-+--|..+..... .....|++++
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~--~g~~vPtivF 85 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSP--DGQYVPRIMF 85 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCc--cCcccCeEEE
Confidence 46899999999999 999999877542 34343455676555554433211111 1246788775
No 261
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=88.52 E-value=1.2 Score=47.05 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=31.0
Q ss_pred CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311 346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI 391 (570)
Q Consensus 346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI 391 (570)
..+|+|+|.|.||+--+... +.+.-..+++.. .+=.+||-.+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~----P~~kvvwg~V 56 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEF----PEGKVVWGKV 56 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhC----CCcceEEEEc
Confidence 46899999999999888777 667667776532 1245888875
No 262
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=88.51 E-value=2.6 Score=42.40 Aligned_cols=107 Identities=14% Similarity=0.191 Sum_probs=61.3
Q ss_pred CCcccCCCCCeeeccc-cCCCE--EEEEEe-----cCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCC
Q 008311 328 QPLVDGSTKRRVNIEV-LRRKN--VLLLIS-----DLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIH 397 (570)
Q Consensus 328 ~pl~~g~~G~~Vsls~-LkGKv--VlL~Fw-----AsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~ 397 (570)
.-.|+|.+|+ |+|++ |.|+- |+-.|- ..-|+.|-..+ +......+.+ .+.-++.||= .
T Consensus 48 ~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~------rd~tfa~vSr---a-- 115 (211)
T PF05988_consen 48 DYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHA------RDTTFAVVSR---A-- 115 (211)
T ss_pred CeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHh------CCceEEEEeC---C--
Confidence 3568999996 99988 56763 333332 45699999988 7677777753 3577788872 1
Q ss_pred CChhhHHHHHHH-HcCCCceeeccccccChHHHHHHHHhCCC-----CCCceEEEEC-CCCcEEcc
Q 008311 398 WDDPTQKKFETL-QSSMPWYTVYHPTLIDRAVIRYVKDVWHF-----KNKPILVVLD-PQGRVVSP 456 (570)
Q Consensus 398 w~D~~~~~F~~~-~~~MPW~aV~fP~l~D~~~~~~L~~~y~V-----~~IPtlVVLD-pqGkVv~~ 456 (570)
--+....|++. .-.+|||+..- ......|++ ...|-+-++= ..|+|-+.
T Consensus 116 -P~~~i~afk~rmGW~~pw~Ss~g---------s~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhT 171 (211)
T PF05988_consen 116 -PLEKIEAFKRRMGWTFPWYSSYG---------SDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHT 171 (211)
T ss_pred -CHHHHHHHHHhcCCCceEEEcCC---------CcccccccceeccCCCceeEEEEEEcCCEEEEE
Confidence 12233444332 22455655431 123344665 4567555444 33666543
No 263
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=88.48 E-value=0.93 Score=41.33 Aligned_cols=54 Identities=13% Similarity=0.004 Sum_probs=41.1
Q ss_pred cCCeEEEEEe-cC-CCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhcccc
Q 008311 504 KEGKYIFLYG-GD-DVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQP 558 (570)
Q Consensus 504 ~egk~I~lYf-ga-d~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~~ 558 (570)
..||.+-|+| +. .|++|+.=.+.+.++++. .+..++++.|+.+++.. +++.++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~-~~~~~~~ 82 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP-VREFLKK 82 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH-HHHHHHH
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH-HHHHHHh
Confidence 6677644444 44 799999999999999876 67779999999888766 5555544
No 264
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=88.47 E-value=0.45 Score=53.32 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=40.8
Q ss_pred hHHHHHHHhhccCC----CCCcccCCCCCeeecc------c---cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHh
Q 008311 313 NMKVLKALIYAKDD----LQPLVDGSTKRRVNIE------V---LRRKNVLLLISDLDISQEELSI--LEQIYNESR 374 (570)
Q Consensus 313 ~~~~Lk~LI~~k~~----~~pl~~g~~G~~Vsls------~---LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk 374 (570)
+..+.+.+..++-. .+|+-.+.++.+|..= + =.+|.||+-|.|.||++|.+.- ++++-++++
T Consensus 338 ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~ 414 (493)
T KOG0190|consen 338 IESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYK 414 (493)
T ss_pred HHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhc
Confidence 45556666655443 2455555554434321 1 1579999999999999999987 666666665
No 265
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=88.34 E-value=1.3 Score=38.76 Aligned_cols=56 Identities=5% Similarity=0.003 Sum_probs=42.0
Q ss_pred cccCCeEEEEEe-cC-CCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhcccc
Q 008311 502 WIKEGKYIFLYG-GD-DVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQP 558 (570)
Q Consensus 502 ~~~egk~I~lYf-ga-d~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~~ 558 (570)
.-+.||++.|+| +. .|+.|+.-.+.+.+.+++ ....+.++.|+.|.++ ++++..+.
T Consensus 21 ~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~-~~~~~~~~ 79 (124)
T PF00578_consen 21 SDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPE-EIKQFLEE 79 (124)
T ss_dssp GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHH-HHHHHHHH
T ss_pred HHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccccc-chhhhhhh
Confidence 345788776666 33 599999999999999976 4568999999997766 44444443
No 266
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.87 E-value=6.8 Score=37.71 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=74.1
Q ss_pred CcccCCCCCeeeccccCCCEEEEE-EecCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHH
Q 008311 329 PLVDGSTKRRVNIEVLRRKNVLLL-ISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFE 407 (570)
Q Consensus 329 pl~~g~~G~~Vsls~LkGKvVlL~-FwAsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~ 407 (570)
..+.+.+...++++++.||..+++ |=+-+-|-|...+ ++|-++... -.+..|+-||. | ..=.+++|=
T Consensus 27 ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qv-r~Fn~~aa~-----~~~~~Vl~IS~-D-----LPFAq~RfC 94 (158)
T COG2077 27 FTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQV-RKFNEEAAK-----LGNTVVLCISM-D-----LPFAQKRFC 94 (158)
T ss_pred eEEEcCcccceeccccCCceEEEEEccCCCCchhhHHH-HHHHHHHhc-----cCCcEEEEEeC-C-----ChhHHhhhh
Confidence 445688889999999999876665 5555788898887 445555431 24688999996 3 233455553
Q ss_pred HHHcCCCceeeccccccChHHHHHHHHhCCC--CCCc-------eEEEECCCCcEEccccchhHhh
Q 008311 408 TLQSSMPWYTVYHPTLIDRAVIRYVKDVWHF--KNKP-------ILVVLDPQGRVVSPNALHMMWI 464 (570)
Q Consensus 408 ~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V--~~IP-------tlVVLDpqGkVv~~na~~~I~~ 464 (570)
.- ..+.- .++ +.|- +.+..-+.||+ ..-| ..+|+|.+|+|+..+-...|.+
T Consensus 95 ~a-eGi~n-v~~---lSd~-r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~eit~ 154 (158)
T COG2077 95 GA-EGIEN-VIT---LSDF-RDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVPEITE 154 (158)
T ss_pred hh-cCccc-ceE---hhhh-hhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccchhhc
Confidence 21 11111 111 1121 23456677875 3444 6789999999999877666543
No 267
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=87.77 E-value=1.5 Score=36.86 Aligned_cols=34 Identities=9% Similarity=0.198 Sum_probs=25.1
Q ss_pred EEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311 350 LLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI 391 (570)
Q Consensus 350 lL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI 391 (570)
+..|+.+|||+|+.-- |.++..++ .++++..+++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--------~~i~~~~idi 38 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--------DDFDYRYVDI 38 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--------cCCcEEEEEC
Confidence 4569999999999987 77776543 2466777776
No 268
>PRK10329 glutaredoxin-like protein; Provisional
Probab=87.46 E-value=1.2 Score=37.68 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=41.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccccccccccCCC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~~~~ 569 (570)
|-+|...+|++|+. +++..++.|++||.+-|..|.. .+.++. .+.-.+|.+++.|.
T Consensus 3 v~lYt~~~Cp~C~~----ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~ 59 (81)
T PRK10329 3 ITIYTRNDCVQCHA----TKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDL 59 (81)
T ss_pred EEEEeCCCCHhHHH----HHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCE
Confidence 56999999999966 4444466799999999987653 334444 36678888887763
No 269
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=87.20 E-value=1.3 Score=39.94 Aligned_cols=46 Identities=17% Similarity=0.331 Sum_probs=36.4
Q ss_pred CeEEEEEe-cCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhh
Q 008311 506 GKYIFLYG-GDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDK 551 (570)
Q Consensus 506 gk~I~lYf-gad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~ 551 (570)
++.+.+++ +..|++|+.-.+.|.+.+++ .+..+++|.|+.|+.++.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~ 71 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKL 71 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHH
Confidence 45666665 55699999999999999976 356799999998876543
No 270
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=87.20 E-value=1.3 Score=40.24 Aligned_cols=45 Identities=11% Similarity=-0.090 Sum_probs=36.3
Q ss_pred cCCeEEEEEe--cCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCch
Q 008311 504 KEGKYIFLYG--GDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR 549 (570)
Q Consensus 504 ~egk~I~lYf--gad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~ 549 (570)
..||.+-||| |.+|++|+.=.+.+.+.+++. ..++++-|+.|+++
T Consensus 24 ~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~~~vi~Is~d~~~ 70 (143)
T cd03014 24 FAGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-DNTVVLTISADLPF 70 (143)
T ss_pred hCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-CCCEEEEEECCCHH
Confidence 4677766666 555999999999999999875 37999999988754
No 271
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=87.19 E-value=1.2 Score=40.26 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=29.5
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI 391 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI 391 (570)
.+++++..|+..+||.|+.+- |.+++.++. ++.+++.++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~--------~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP--------DVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC--------CceEEEEeC
Confidence 478999999999999999987 777665442 356666554
No 272
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=86.53 E-value=1.5 Score=41.70 Aligned_cols=57 Identities=11% Similarity=-0.108 Sum_probs=43.3
Q ss_pred cCCeEEEEEe--cCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccc
Q 008311 504 KEGKYIFLYG--GDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLK 562 (570)
Q Consensus 504 ~egk~I~lYf--gad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~ 562 (570)
..||.+-|+| +..|++|+.=.+.+.+.|++.+ +++++-||.|.+ +..++..+..+++
T Consensus 42 ~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~-~~~~~f~~~~~~~ 100 (167)
T PRK00522 42 FAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLP-FAQKRFCGAEGLE 100 (167)
T ss_pred hCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCH-HHHHHHHHhCCCC
Confidence 4687665555 5569999999999999988753 899999999876 3446666666654
No 273
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=86.28 E-value=1.2 Score=39.05 Aligned_cols=59 Identities=8% Similarity=0.117 Sum_probs=42.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcc----ccccccccccCCC
Q 008311 507 KYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESW----QPLQLKSLVTSGK 569 (570)
Q Consensus 507 k~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~----~~~~~~~~~~~~~ 569 (570)
.-|-+|+-..||+|++ ++++-++.+++|+.+-|..+....+.++.+ +.-.+|.+.++|+
T Consensus 8 ~~Vvvysk~~Cp~C~~----ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~ 70 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHV----VKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGK 70 (99)
T ss_pred CCEEEEECCCCHHHHH----HHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCE
Confidence 4477998888999965 444555669999999999876544443333 4567788888885
No 274
>PTZ00056 glutathione peroxidase; Provisional
Probab=85.63 E-value=1.4 Score=43.39 Aligned_cols=58 Identities=9% Similarity=0.116 Sum_probs=46.2
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecC-------Cchhhhhhccccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKS-------TKRDKCGESWQPLQL 561 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d-------~~~e~~~~~~~~~~~ 561 (570)
..||.+-|.|-+. |++|++=.+.|.++|++ .+..++++-|+.+ ++.+.+++.++..++
T Consensus 37 ~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~ 103 (199)
T PTZ00056 37 LKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI 103 (199)
T ss_pred hCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCC
Confidence 4689888888777 99999999999999976 4566999999864 455778887766544
No 275
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=85.62 E-value=4.5 Score=41.50 Aligned_cols=121 Identities=13% Similarity=0.219 Sum_probs=73.1
Q ss_pred CCCCCcccCCCCCe-eecccc-C-CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCC
Q 008311 325 DDLQPLVDGSTKRR-VNIEVL-R-RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWD 399 (570)
Q Consensus 325 ~~~~pl~~g~~G~~-Vsls~L-k-GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~ 399 (570)
.++-.-+...+|++ .++.++ + +++++|+|.+--|||-+.-+ ++++.+++.+ --+|-+|+|-=.-.++.|.
T Consensus 78 ~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d-----~adFl~VYI~EAHpsDgW~ 152 (237)
T PF00837_consen 78 PAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD-----VADFLIVYIEEAHPSDGWA 152 (237)
T ss_pred CCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh-----hhheehhhHhhhCcCCCcc
Confidence 33333344556666 899887 4 48999999999999999888 9999999974 2367777762100112221
Q ss_pred -------------hhhH-HHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCc-eEEEECCCCcEEcccc
Q 008311 400 -------------DPTQ-KKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKP-ILVVLDPQGRVVSPNA 458 (570)
Q Consensus 400 -------------D~~~-~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IP-tlVVLDpqGkVv~~na 458 (570)
-+++ ..-+.+....| ..|.+.|. ......+.|+ ..| .++||. +|||+...|
T Consensus 153 ~~~~~~~i~qh~sledR~~aA~~l~~~~~----~~pi~vD~-mdN~~~~~Yg--A~PeRlyIi~-~gkv~Y~Gg 218 (237)
T PF00837_consen 153 FGNNPYEIPQHRSLEDRLRAAKLLKEEFP----QCPIVVDT-MDNNFNKAYG--ALPERLYIIQ-DGKVVYKGG 218 (237)
T ss_pred CCCCceeecCCCCHHHHHHHHHHHHhhCC----CCCEEEEc-cCCHHHHHhC--CCcceEEEEE-CCEEEEeCC
Confidence 1111 22223333333 34445564 3445566665 456 466664 999998765
No 276
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=84.91 E-value=1.6 Score=43.02 Aligned_cols=38 Identities=8% Similarity=0.195 Sum_probs=30.5
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK 548 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~ 548 (570)
+..|++..|++|++|.|.+++++++.+ |+++-|+-|.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~ 110 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQ 110 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCC
Confidence 444567779999999999999998864 78888887643
No 277
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=84.62 E-value=0.92 Score=51.45 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=47.2
Q ss_pred CEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccccc
Q 008311 347 KNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLI 424 (570)
Q Consensus 347 KvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~ 424 (570)
|.-+|-|.++|||.||.|. .+++-+.++. =-.||-|-.||= -
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~-------W~~vv~vaaVdC-----A------------------------ 101 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEK-------WRPVVRVAAVDC-----A------------------------ 101 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhc-------ccceeEEEEeec-----c------------------------
Confidence 4567889999999999998 8887777752 123555554431 0
Q ss_pred ChHHHHHHHHhCCCCCCceEEEECCC
Q 008311 425 DRAVIRYVKDVWHFKNKPILVVLDPQ 450 (570)
Q Consensus 425 D~~~~~~L~~~y~V~~IPtlVVLDpq 450 (570)
| +....+.+.|+|++.|++--.-|+
T Consensus 102 ~-~~N~~lCRef~V~~~Ptlryf~~~ 126 (606)
T KOG1731|consen 102 D-EENVKLCREFSVSGYPTLRYFPPD 126 (606)
T ss_pred c-hhhhhhHhhcCCCCCceeeecCCc
Confidence 0 012347888999999999998876
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=84.58 E-value=1.4 Score=53.98 Aligned_cols=43 Identities=14% Similarity=-0.016 Sum_probs=37.7
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEec
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGK 545 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~ 545 (570)
...||++.|+|-+. |++||...|.|.++|++ .+..|+++-|+.
T Consensus 417 ~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~ 461 (1057)
T PLN02919 417 DLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHS 461 (1057)
T ss_pred hcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEec
Confidence 45799999999999 99999999999999987 456699999963
No 279
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=84.33 E-value=1.3 Score=40.92 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=42.5
Q ss_pred ccCCeEEEEEec--CCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhccccccc
Q 008311 503 IKEGKYIFLYGG--DDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQPLQL 561 (570)
Q Consensus 503 ~~egk~I~lYfg--ad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~~~~~ 561 (570)
...||++-|+|. ..|++|+.=.+.+.+.+++ .+..++++.|+.|.+ +.++++.+..++
T Consensus 27 ~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~-~~~~~~~~~~~~ 87 (154)
T PRK09437 27 DFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKP-EKLSRFAEKELL 87 (154)
T ss_pred HhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHhCC
Confidence 357887777774 4599999888888888766 456799999998854 666666655443
No 280
>PHA03050 glutaredoxin; Provisional
Probab=84.22 E-value=2.1 Score=38.39 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=43.0
Q ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHhhCCC---CEEEEEEecCCc----hhhhhhccccccccccccCCC
Q 008311 505 EGKYIFLYGGDDVEWVRKFTTAARSVANTARI---PLEMVYVGKSTK----RDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 505 egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~---~fEiv~Vs~d~~----~e~~~~~~~~~~~~~~~~~~~ 569 (570)
.++.|-+|.-..||+|+. ++++-++.++ +||.+-|.+..+ ++.+.+.-+--..|.+.++|+
T Consensus 11 ~~~~V~vys~~~CPyC~~----ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~ 78 (108)
T PHA03050 11 ANNKVTIFVKFTCPFCRN----ALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKT 78 (108)
T ss_pred ccCCEEEEECCCChHHHH----HHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCE
Confidence 345588998888999955 4444455465 899999997444 345555555568899988885
No 281
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=83.43 E-value=4.5 Score=37.07 Aligned_cols=48 Identities=13% Similarity=0.062 Sum_probs=36.8
Q ss_pred eeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311 339 VNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI 391 (570)
Q Consensus 339 Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI 391 (570)
..+..-.+++++..|...-||+|+.+. +.++.+++-+ ..++.+++.++
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~-----~~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYID-----PGKVKFVFRPV 54 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-----TTTEEEEEEES
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccC-----CCceEEEEEEc
Confidence 345556789999999999999999987 7788888732 24788999876
No 282
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=83.34 E-value=2.5 Score=39.95 Aligned_cols=58 Identities=9% Similarity=0.077 Sum_probs=44.2
Q ss_pred CCeEEEEEecC-CCchHHHHHHHHHHHHhhC-CCCEEEEEEecCC-------chhhhhhcccccccc
Q 008311 505 EGKYIFLYGGD-DVEWVRKFTTAARSVANTA-RIPLEMVYVGKST-------KRDKCGESWQPLQLK 562 (570)
Q Consensus 505 egk~I~lYfga-d~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~-------~~e~~~~~~~~~~~~ 562 (570)
.||.+-|||.+ .|+.|+.-.+.+.+++++. +.++++|.|+.|. +.++++++++..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~ 90 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYP 90 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCC
Confidence 67777666644 4999999999999999774 4689999999875 456777766655544
No 283
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=83.29 E-value=2.5 Score=37.33 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=43.9
Q ss_pred cccCCeEEEEEecCC-CchHHHHHHHH---HHHHhhCCCCEEEEEEecCC-chhhhhhccccccccccccC
Q 008311 502 WIKEGKYIFLYGGDD-VEWVRKFTTAA---RSVANTARIPLEMVYVGKST-KRDKCGESWQPLQLKSLVTS 567 (570)
Q Consensus 502 ~~~egk~I~lYfgad-~~w~r~FT~~l---~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~~ 567 (570)
.-.++|.+.+|+.++ |++|+.|.... .++.+..+.+|-.+-+.-++ ...++.+.+++-+.|++++-
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence 346899999999777 99999997532 22222233355555444433 34478888888899988753
No 284
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=82.69 E-value=2.9 Score=34.14 Aligned_cols=55 Identities=27% Similarity=0.306 Sum_probs=45.6
Q ss_pred EEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311 511 LYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 511 lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
||+...|++|++=.-.| +..|+++|.+-|...+.++.+.+....-.+|.|+.+|.
T Consensus 1 Ly~~~~Sp~~~kv~~~l----~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~ 55 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLAL----EEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGE 55 (75)
T ss_dssp EEEETTSHHHHHHHHHH----HHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTE
T ss_pred CCCcCCChHHHHHHHHH----HHcCCeEEEeccCcccchhHHHhhcccccceEEEECCE
Confidence 78889999997644444 55699999999998888889999988889999998774
No 285
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=82.49 E-value=4.3 Score=33.07 Aligned_cols=32 Identities=13% Similarity=-0.011 Sum_probs=21.5
Q ss_pred EEEecCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEec
Q 008311 351 LLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPI 391 (570)
Q Consensus 351 L~FwAsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsI 391 (570)
+.|++.|||+|+..- ++.+++ +.+|+++-|..
T Consensus 3 ~~y~~~~Cp~C~~~~--~~l~~~-------~~~~~~~~v~~ 34 (82)
T cd03419 3 VVFSKSYCPYCKRAK--SLLKEL-------GVKPAVVELDQ 34 (82)
T ss_pred EEEEcCCCHHHHHHH--HHHHHc-------CCCcEEEEEeC
Confidence 568999999998764 333333 23577777763
No 286
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=82.34 E-value=9.2 Score=39.51 Aligned_cols=118 Identities=17% Similarity=0.169 Sum_probs=64.6
Q ss_pred CcccC--CCCCeeeccc-cCCCE-EEEEEecCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHH
Q 008311 329 PLVDG--STKRRVNIEV-LRRKN-VLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQK 404 (570)
Q Consensus 329 pl~~g--~~G~~Vsls~-LkGKv-VlL~FwAsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~ 404 (570)
|.+.| .+|+.+++.+ ++||+ |+..|+.-|-..|...-...+.+++..+ .+..+++|-|++.+ .-.+
T Consensus 102 P~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~---~~~~~q~v~In~~e-------~~~k 171 (252)
T PF05176_consen 102 PNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQE---PYGRVQIVEINLIE-------NWLK 171 (252)
T ss_pred CCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhC---CCCceEEEEEecch-------HHHH
Confidence 55555 5777888755 89996 3333444555444444444555555421 12389999999833 2222
Q ss_pred HHH------HHHcCCC-ceeeccccccChHHHHHHHHhCCCCC--CceEEEECCCCcEEcc
Q 008311 405 KFE------TLQSSMP-WYTVYHPTLIDRAVIRYVKDVWHFKN--KPILVVLDPQGRVVSP 456 (570)
Q Consensus 405 ~F~------~~~~~MP-W~aV~fP~l~D~~~~~~L~~~y~V~~--IPtlVVLDpqGkVv~~ 456 (570)
.|- .+.+.+| +..-.|....+......+++..++.+ ..-.+|||++|+|.-.
T Consensus 172 ~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWa 232 (252)
T PF05176_consen 172 SWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWA 232 (252)
T ss_pred HHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeC
Confidence 221 2334444 10011111111111346888888876 4668899999999754
No 287
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=82.13 E-value=2.1 Score=40.74 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=38.0
Q ss_pred cCCeEEEEEe--cCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCch
Q 008311 504 KEGKYIFLYG--GDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKR 549 (570)
Q Consensus 504 ~egk~I~lYf--gad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~ 549 (570)
..||++-||| +..|++|+.-.+.+.+.|++ ....+.++.||.|...
T Consensus 27 ~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~ 75 (173)
T cd03015 27 YKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHF 75 (173)
T ss_pred hCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHH
Confidence 4689988888 56699999999999999876 3467999999987653
No 288
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=81.54 E-value=3 Score=34.03 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=40.2
Q ss_pred CeEEEEE-ecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccc--cccccccc
Q 008311 506 GKYIFLY-GGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQ--PLQLKSLV 565 (570)
Q Consensus 506 gk~I~lY-fgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~--~~~~~~~~ 565 (570)
++.+.+. ++..|+.|+.+.+.+.+++++.+..++++.+...+..+.....++ ...+|+++
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~ 94 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLL 94 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEE
Confidence 6666665 455599999999999999987554666666666533334444444 55666665
No 289
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=81.10 E-value=3.3 Score=37.08 Aligned_cols=54 Identities=17% Similarity=0.030 Sum_probs=40.4
Q ss_pred ccCCeEEEEEe--cCCCchHHHHHHHHHHHHhhC-CCCEEEEEEecCCchhhhhhccc
Q 008311 503 IKEGKYIFLYG--GDDVEWVRKFTTAARSVANTA-RIPLEMVYVGKSTKRDKCGESWQ 557 (570)
Q Consensus 503 ~~egk~I~lYf--gad~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~~e~~~~~~~ 557 (570)
...||.+-||| +..|++|+.-.+.+.+.|++. ...+++|.|+.|+++ ..++..+
T Consensus 19 ~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~-~~~~~~~ 75 (140)
T cd02971 19 DFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPF-SHKAWAE 75 (140)
T ss_pred HhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHh
Confidence 34688777777 445999999999999998763 457999999988654 4444444
No 290
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=80.69 E-value=3.1 Score=33.37 Aligned_cols=56 Identities=16% Similarity=0.020 Sum_probs=41.2
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC---chhhhhhccccccccccccCCC
Q 008311 510 FLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST---KRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 510 ~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~---~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
-||+...|+.|+. ++.+.++.|.+||.+.|.-.+ ..+.+++..-.-.+|.|+.+|.
T Consensus 2 ~Ly~~~~~~~~~~----v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~ 60 (74)
T cd03045 2 DLYYLPGSPPCRA----VLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGF 60 (74)
T ss_pred EEEeCCCCCcHHH----HHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCE
Confidence 3788888999974 444446679999999997433 3467887776778899987763
No 291
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=80.58 E-value=3.3 Score=37.68 Aligned_cols=57 Identities=14% Similarity=-0.090 Sum_probs=39.2
Q ss_pred cCC-eEEEEEe--cCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchhhhhhccccccc
Q 008311 504 KEG-KYIFLYG--GDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRDKCGESWQPLQL 561 (570)
Q Consensus 504 ~eg-k~I~lYf--gad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e~~~~~~~~~~~ 561 (570)
..| |.+-|+| +..|++|+.=.+.+.+++++ .+.++.++.|+.|.++ .++++.+..++
T Consensus 25 ~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~-~~~~~~~~~~~ 85 (149)
T cd03018 25 FRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPF-SLRAWAEENGL 85 (149)
T ss_pred HcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHH-HHHHHHHhcCC
Confidence 445 6544444 55599999988899988876 3467999999987643 46655554433
No 292
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=80.46 E-value=4 Score=34.52 Aligned_cols=57 Identities=11% Similarity=0.232 Sum_probs=42.7
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc--h-hhhhhccccccccccccCCC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK--R-DKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~--~-e~~~~~~~~~~~~~~~~~~~ 569 (570)
|-+|.=..||+|.+ ++++-++.|.+||.+.|..+.. . +.+++.-+....|.+.++|+
T Consensus 3 v~iyt~~~CPyC~~----ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKR----AKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGK 62 (80)
T ss_pred EEEEECCCCchHHH----HHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCE
Confidence 55777666999954 5555567799999999999984 3 34445447888999999885
No 293
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=80.35 E-value=8.5 Score=39.46 Aligned_cols=123 Identities=11% Similarity=0.083 Sum_probs=76.0
Q ss_pred eeeccccCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCe-EEEEEecccCCCCCChhhHHHHHHHHcCCC
Q 008311 338 RVNIEVLRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHY-EVVWIPIVDHFIHWDDPTQKKFETLQSSMP 414 (570)
Q Consensus 338 ~Vsls~LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~f-EIV~IsIvD~s~~w~D~~~~~F~~~~~~MP 414 (570)
...+...+|+|++|-+-..+|..|..-. |..+-.++.. +++ +|-|+-|.. .....+..+..+....|
T Consensus 18 ~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~------~g~~~I~f~vVN~----~~~~s~~~~~~l~~r~~ 87 (238)
T PF04592_consen 18 QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLEN------EGLSNISFMVVNH----QGEHSRLKYWELKRRVS 87 (238)
T ss_pred chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHH------CCCCceEEEEEcC----CCcchhHHHHHHHHhCC
Confidence 5677889999999999999999999977 9999999963 233 555554422 23445555555554433
Q ss_pred ceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHH
Q 008311 415 WYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREE 478 (570)
Q Consensus 415 W~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e 478 (570)
..+|++........+.+.++-+ .=-.+|+|+=|+++.. +..-|..-.|||......
T Consensus 88 ---~~ipVyqq~~~q~dvW~~L~G~-kdD~~iyDRCGrL~~~----i~~P~S~l~~~~ve~Ai~ 143 (238)
T PF04592_consen 88 ---EHIPVYQQDENQPDVWELLNGS-KDDFLIYDRCGRLTYH----IPLPYSFLQFPYVEAAIK 143 (238)
T ss_pred ---CCCceecCCccccCHHHHhCCC-cCcEEEEeccCcEEEE----ecCcHHHhcCHHHHHHHH
Confidence 1234332222233455555433 3457899999999864 223344455666544433
No 294
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=80.20 E-value=3.2 Score=34.15 Aligned_cols=55 Identities=22% Similarity=0.208 Sum_probs=41.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhccccccccccccC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPLQLKSLVTS 567 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~~~~ 567 (570)
+=||+...|++|++-.-.| ++.|+++|.+-|+++. ..+.+++....-..|.|+.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L----~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~ 57 (77)
T cd03041 2 LELYEFEGSPFCRLVREVL----TELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDP 57 (77)
T ss_pred ceEecCCCCchHHHHHHHH----HHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeC
Confidence 3489999999997544444 5569999999998654 34667777777788888763
No 295
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=80.00 E-value=4.8 Score=31.39 Aligned_cols=16 Identities=6% Similarity=0.002 Sum_probs=12.9
Q ss_pred EEEEecCCCHHhHHHH
Q 008311 350 LLLISDLDISQEELSI 365 (570)
Q Consensus 350 lL~FwAsWCpPCr~e~ 365 (570)
+..|++.|||+|+.-.
T Consensus 2 v~l~~~~~c~~c~~~~ 17 (73)
T cd02976 2 VTVYTKPDCPYCKATK 17 (73)
T ss_pred EEEEeCCCChhHHHHH
Confidence 4568999999998744
No 296
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=79.73 E-value=3.1 Score=35.37 Aligned_cols=62 Identities=8% Similarity=0.192 Sum_probs=42.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCC-chhhhhhcccc--ccccccccCCC
Q 008311 508 YIFLYGGDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKST-KRDKCGESWQP--LQLKSLVTSGK 569 (570)
Q Consensus 508 ~I~lYfgad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~-~~e~~~~~~~~--~~~~~~~~~~~ 569 (570)
+|-+|....||+|++=-..|.+...+ .+..+|.+-+..+. .++.+.+..+. ..+|.+.++|+
T Consensus 1 ~V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~ 66 (86)
T TIGR02183 1 FVVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEK 66 (86)
T ss_pred CEEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCE
Confidence 36788888899997766666555322 35778888787554 23345555554 68899988885
No 297
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=79.51 E-value=1.1 Score=47.22 Aligned_cols=67 Identities=10% Similarity=0.143 Sum_probs=40.4
Q ss_pred CEEEEEEecCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccccCh
Q 008311 347 KNVLLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDR 426 (570)
Q Consensus 347 KvVlL~FwAsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~D~ 426 (570)
-.-++.|.|.||+.|.+. ..++++..- .+.=+..|| .. .+|. +-.||
T Consensus 44 diW~VdFYAPWC~HCKkL--ePiWdeVG~-------elkdig~Pi----------kV-------GKlD--aT~f~----- 90 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKL--EPIWDEVGH-------ELKDIGLPI----------KV-------GKLD--ATRFP----- 90 (468)
T ss_pred CeEEEEeechhhhhcccc--cchhHHhCc-------chhhcCCce----------ee-------cccc--cccch-----
Confidence 467899999999999874 455555421 111233443 00 1111 11233
Q ss_pred HHHHHHHHhCCCCCCceEEEECCC
Q 008311 427 AVIRYVKDVWHFKNKPILVVLDPQ 450 (570)
Q Consensus 427 ~~~~~L~~~y~V~~IPtlVVLDpq 450 (570)
.++..|+++|.||..++..+
T Consensus 91 ----aiAnefgiqGYPTIk~~kgd 110 (468)
T KOG4277|consen 91 ----AIANEFGIQGYPTIKFFKGD 110 (468)
T ss_pred ----hhHhhhccCCCceEEEecCC
Confidence 37788999999998877533
No 298
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=79.37 E-value=4.3 Score=32.35 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=42.2
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCC
Q 008311 510 FLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSG 568 (570)
Q Consensus 510 ~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~ 568 (570)
-||+...|++|+.-.-.| ++.|.+||.+.|+-++..+.+++....=.+|.|+.+|
T Consensus 2 ~ly~~~~~~~~~~v~~~l----~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~ 56 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVL----AEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRD 56 (73)
T ss_pred EEEECCCChhHHHHHHHH----HHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECC
Confidence 378878899887654444 5569999999998877777888877777888887655
No 299
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=79.36 E-value=2.8 Score=41.38 Aligned_cols=56 Identities=11% Similarity=0.216 Sum_probs=41.5
Q ss_pred CeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 506 GKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 506 gk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
+++|.++|.++ |++|+...+.+.+++++-. ++.||.-+-.+ .-+.+.+-.+|||++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~--~~~~~~i~~lPTlli 158 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQ--CIPNYPDKNLPTILV 158 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHH--hHhhCCCCCCCEEEE
Confidence 46888999888 9999999999999997643 24455444332 246678888888865
No 300
>PHA03050 glutaredoxin; Provisional
Probab=79.24 E-value=2.2 Score=38.32 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=21.2
Q ss_pred EEEEecCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEe
Q 008311 350 LLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIP 390 (570)
Q Consensus 350 lL~FwAsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~Is 390 (570)
++.|+.+|||.|..-. ++-++++- ....|+++-|.
T Consensus 15 V~vys~~~CPyC~~ak--~~L~~~~i----~~~~~~~i~i~ 49 (108)
T PHA03050 15 VTIFVKFTCPFCRNAL--DILNKFSF----KRGAYEIVDIK 49 (108)
T ss_pred EEEEECCCChHHHHHH--HHHHHcCC----CcCCcEEEECC
Confidence 3459999999998754 33344321 12357777664
No 301
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=78.90 E-value=1.5 Score=50.28 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=45.5
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHH---HHHHhhCCCCEEEEEEecCCch---hhhhhcccccccccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAA---RSVANTARIPLEMVYVGKSTKR---DKCGESWQPLQLKSLVT 566 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l---~~vy~~~~~~fEiv~Vs~d~~~---e~~~~~~~~~~~~~~~~ 566 (570)
-.+||.+.++|.++ |++||.+.+.. .++.++.+ ++.++.|.-++++ .++.+.+++-.+|++++
T Consensus 471 ~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~ 540 (571)
T PRK00293 471 KGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTILF 540 (571)
T ss_pred HhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEE
Confidence 35799999999999 99999997754 45554433 4666666655432 35667788888998876
No 302
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=78.30 E-value=4.6 Score=37.54 Aligned_cols=55 Identities=7% Similarity=0.014 Sum_probs=42.4
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecCC-------chhhhhhcccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKST-------KRDKCGESWQP 558 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~-------~~e~~~~~~~~ 558 (570)
...||.+.|+|-+. |+ |+.=.+.+.++|++ .+..++++-|+.+. +.+.+++.++.
T Consensus 19 ~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~ 82 (152)
T cd00340 19 KYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCET 82 (152)
T ss_pred HhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHH
Confidence 35689999988777 99 99999999999977 34679999998642 34567777654
No 303
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=77.43 E-value=6 Score=33.55 Aligned_cols=61 Identities=23% Similarity=0.206 Sum_probs=46.0
Q ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccC-CC
Q 008311 505 EGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTS-GK 569 (570)
Q Consensus 505 egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~-~~ 569 (570)
+...+-||+...|++|+.- .-+..+.|.+||.+-+.-++..+.+++....-.+|.|+++ |.
T Consensus 15 ~~~~~~Ly~~~~sp~~~kv----~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~ 76 (89)
T cd03055 15 VPGIIRLYSMRFCPYAQRA----RLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGK 76 (89)
T ss_pred CCCcEEEEeCCCCchHHHH----HHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCC
Confidence 3445788998889999844 3333556999999999877666678887777788999987 54
No 304
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=77.20 E-value=5 Score=37.30 Aligned_cols=55 Identities=5% Similarity=-0.020 Sum_probs=42.0
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhhC-CCCEEEEEEec-------CCchhhhhhccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANTA-RIPLEMVYVGK-------STKRDKCGESWQ 557 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~-------d~~~e~~~~~~~ 557 (570)
-..||.+.|++-+. |++|+.=-+.+.++|++. +..++++.|+. .++.+.+++.++
T Consensus 19 ~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~ 82 (153)
T TIGR02540 19 KYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFAR 82 (153)
T ss_pred HhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHH
Confidence 45789877777666 999999999999999874 45799999984 244566666664
No 305
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=77.11 E-value=4.4 Score=37.83 Aligned_cols=41 Identities=15% Similarity=-0.025 Sum_probs=28.7
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhC--CCCEEEEEEec
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTA--RIPLEMVYVGK 545 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~--~~~fEiv~Vs~ 545 (570)
+++..-++|.+- ||||+.|.+.+.+..++. +..|+.+.++.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~~ 57 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVVF 57 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCcc
Confidence 565555555555 999999999999988763 45566555543
No 306
>PF13728 TraF: F plasmid transfer operon protein
Probab=77.04 E-value=4.9 Score=40.35 Aligned_cols=50 Identities=8% Similarity=0.050 Sum_probs=37.2
Q ss_pred cCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC----------chhhhhhccccccccccc
Q 008311 514 GDDVEWVRKFTTAARSVANTARIPLEMVYVGKST----------KRDKCGESWQPLQLKSLV 565 (570)
Q Consensus 514 gad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~----------~~e~~~~~~~~~~~~~~~ 565 (570)
..+|+-|+.|.+.+..+.++. .|+++.||.|. ......+.+++...|+++
T Consensus 129 ~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~ 188 (215)
T PF13728_consen 129 RSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALF 188 (215)
T ss_pred cCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEE
Confidence 446999999999999998765 67899999984 334444456776666664
No 307
>PLN02412 probable glutathione peroxidase
Probab=76.94 E-value=4.6 Score=38.52 Aligned_cols=44 Identities=7% Similarity=0.022 Sum_probs=36.4
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecC
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKS 546 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d 546 (570)
...||.+-|+|-+. |++|+.--+.|.++|++ .+..++++-|+.|
T Consensus 26 ~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 26 QYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred HhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 34789988888555 99999989999999976 4456999999975
No 308
>PTZ00062 glutaredoxin; Provisional
Probab=76.73 E-value=4.7 Score=40.35 Aligned_cols=50 Identities=10% Similarity=0.015 Sum_probs=39.7
Q ss_pred eEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 507 KYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 507 k~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
..+-+||.+. ||+|+...+.+.++.++. .++..+.|..| +++.++||+++
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d---------~~V~~vPtfv~ 68 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA---------DANNEYGVFEF 68 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc---------cCcccceEEEE
Confidence 3456788888 999999999999998764 34666666555 99999999886
No 309
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=76.15 E-value=4 Score=39.66 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=37.8
Q ss_pred ccCCeEEEEEe--cCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCch
Q 008311 503 IKEGKYIFLYG--GDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKR 549 (570)
Q Consensus 503 ~~egk~I~lYf--gad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~ 549 (570)
...||.+-||| ++.|++|+.=.+.+.+.+++ .+..++++.||.|.+.
T Consensus 28 d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~ 77 (187)
T TIGR03137 28 DVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHF 77 (187)
T ss_pred HHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHH
Confidence 45788888888 67799999988888888765 3567899999998864
No 310
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=76.14 E-value=6.9 Score=30.90 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=40.6
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecC---CchhhhhhccccccccccccCC
Q 008311 510 FLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKS---TKRDKCGESWQPLQLKSLVTSG 568 (570)
Q Consensus 510 ~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d---~~~e~~~~~~~~~~~~~~~~~~ 568 (570)
=||+...|++|++-.-.| ++.|.++|.+-|.-. ...+.+++....-.+|.|+++|
T Consensus 2 ~Ly~~~~s~~~~~~~~~L----~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~ 59 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFL----AEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDD 59 (74)
T ss_pred EEEeCCCCcchHHHHHHH----HHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCC
Confidence 378888899997655554 455999999988743 2345688877777899998743
No 311
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.87 E-value=6.2 Score=36.62 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=46.9
Q ss_pred ccCCeEEEEEe--cC------C-CchHHHHHHHHHHHHhh--CCCCEEEEEEecC----Cchhhhhhcccc-cccccccc
Q 008311 503 IKEGKYIFLYG--GD------D-VEWVRKFTTAARSVANT--ARIPLEMVYVGKS----TKRDKCGESWQP-LQLKSLVT 566 (570)
Q Consensus 503 ~~egk~I~lYf--ga------d-~~w~r~FT~~l~~vy~~--~~~~fEiv~Vs~d----~~~e~~~~~~~~-~~~~~~~~ 566 (570)
...|+.|++|| |. . ||=|.+=-|...++.++ .+-.|=.||||+. +|...||.-..+ .++|||+-
T Consensus 22 ~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlr 101 (128)
T KOG3425|consen 22 VENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLR 101 (128)
T ss_pred HhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeE
Confidence 44677788887 33 2 67787777777777776 4667788888884 477778888777 88998863
No 312
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=75.80 E-value=6.4 Score=30.41 Aligned_cols=16 Identities=6% Similarity=-0.006 Sum_probs=13.2
Q ss_pred EEEEecCCCHHhHHHH
Q 008311 350 LLLISDLDISQEELSI 365 (570)
Q Consensus 350 lL~FwAsWCpPCr~e~ 365 (570)
+..|++.|||+|+.-.
T Consensus 2 v~ly~~~~Cp~C~~~~ 17 (72)
T cd02066 2 VVVFSKSTCPYCKRAK 17 (72)
T ss_pred EEEEECCCCHHHHHHH
Confidence 3468999999999865
No 313
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.54 E-value=8 Score=33.17 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=47.9
Q ss_pred EEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccccChHH
Q 008311 351 LLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAV 428 (570)
Q Consensus 351 L~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~D~~~ 428 (570)
..|.+--||.|..+. |.++ +-+||.|=|- . +-...++|-.++.++|= | |.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-----------~v~yd~VeIt--~-----Sm~NlKrFl~lRDs~~~----F----d~-- 56 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-----------NVDYDFVEIT--E-----SMANLKRFLHLRDSRPE----F----DE-- 56 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-----------CCCceeeehh--h-----hhhhHHHHHhhhccchh----H----Hh--
Confidence 357888899998876 4332 3467766553 1 45567888888887772 3 43
Q ss_pred HHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311 429 IRYVKDVWHFKNKPILVVLDPQGRVVS 455 (570)
Q Consensus 429 ~~~L~~~y~V~~IPtlVVLDpqGkVv~ 455 (570)
.+..|.-|||.+.+ ++|++|-
T Consensus 57 ----vk~~gyiGIPall~--~d~~vVl 77 (85)
T COG4545 57 ----VKSNGYIGIPALLT--DDGKVVL 77 (85)
T ss_pred ----hhhcCcccceEEEe--CCCcEEE
Confidence 24578899998754 5677764
No 314
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=75.18 E-value=6 Score=35.60 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=26.2
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEE
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYV 543 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~V 543 (570)
+++..-.+|.+- ||||++|-+.+.+++++.+ ++.++|.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEE
Confidence 355555555555 9999999999999876654 3444443
No 315
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=74.90 E-value=5.6 Score=40.70 Aligned_cols=43 Identities=7% Similarity=0.037 Sum_probs=36.6
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecC
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKS 546 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d 546 (570)
..||.+.|+|-+. |++|+.=.+.|.++|++ .+..++++-|+.+
T Consensus 97 ~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 97 FKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred hCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 5789998988777 99999999999999976 4456999999964
No 316
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=74.69 E-value=4.4 Score=44.56 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=41.4
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhc---------cccccccccccCCC
Q 008311 508 YIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGES---------WQPLQLKSLVTSGK 569 (570)
Q Consensus 508 ~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~---------~~~~~~~~~~~~~~ 569 (570)
.|-+|....||+|++ +++.-++.|++||.+-|++|....++.+- .+.-..|.+.++|+
T Consensus 3 ~V~vys~~~Cp~C~~----aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~ 69 (410)
T PRK12759 3 EVRIYTKTNCPFCDL----AKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDV 69 (410)
T ss_pred cEEEEeCCCCHHHHH----HHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCE
Confidence 477998888999954 55555667999999999866544333222 24557788888875
No 317
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=74.61 E-value=9.1 Score=41.29 Aligned_cols=67 Identities=12% Similarity=0.063 Sum_probs=45.2
Q ss_pred CCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccc
Q 008311 346 RKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTL 423 (570)
Q Consensus 346 GKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l 423 (570)
.+..++.|.|.||++|+..+ ..++-..++ .+..+++..+.. +.
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~-----~~~~v~~~~~d~----------~~-------------------- 206 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLK-----SKENVELGKIDA----------TV-------------------- 206 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhc-----cCcceEEEeecc----------ch--------------------
Confidence 35788889999999999985 555555553 134565555531 10
Q ss_pred cChHHHHHHHHhCCCCCCceEEEECCCCc
Q 008311 424 IDRAVIRYVKDVWHFKNKPILVVLDPQGR 452 (570)
Q Consensus 424 ~D~~~~~~L~~~y~V~~IPtlVVLDpqGk 452 (570)
...+...+++++.|+++++-+.++
T Consensus 207 -----~~~~~~~~~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 207 -----HKSLASRLEVRGYPTLKLFPPGEE 230 (383)
T ss_pred -----HHHHhhhhcccCCceEEEecCCCc
Confidence 123566688888999988877666
No 318
>PTZ00256 glutathione peroxidase; Provisional
Probab=74.20 E-value=4.6 Score=39.01 Aligned_cols=44 Identities=14% Similarity=0.012 Sum_probs=34.4
Q ss_pred ccCCeE--EEEEecCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecC
Q 008311 503 IKEGKY--IFLYGGDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKS 546 (570)
Q Consensus 503 ~~egk~--I~lYfgad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d 546 (570)
...||. +.++....|++|++=.|.+.++|++ .+..++++-|+.|
T Consensus 37 ~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 37 KFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred HhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 457884 3566666699999999999999976 4456999999864
No 319
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=71.03 E-value=49 Score=30.79 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=69.6
Q ss_pred HHHHhCCCCCCceEEEECC-CCcEEccccchhHhhhcCCCCCCCchhHHHHhhhcCccccccccCCCccccccc-cCC-e
Q 008311 431 YVKDVWHFKNKPILVVLDP-QGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEETWRLELLVDGIDPLVLDWI-KEG-K 507 (570)
Q Consensus 431 ~L~~~y~V~~IPtlVVLDp-qGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e~~w~~~ll~d~~d~~i~~~~-~eg-k 507 (570)
.+.+.+++.. |++++..+ +++.+.-++- -|+......-....... ++. .+++.-.... ..+ +
T Consensus 32 ~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~-----------~~~~~~l~~fI~~~~~P--~v~-~~t~~n~~~~~~~~~~ 96 (184)
T PF13848_consen 32 ELAKKYGIKE-PTIVVYKKFDEKPVVYDGD-----------KFTPEELKKFIKKNSFP--LVP-ELTPENFEKLFSSPKP 96 (184)
T ss_dssp HHHHHCTCSS-SEEEEEECTTTSEEEESSS-----------TTSHHHHHHHHHHHSST--SCE-EESTTHHHHHHSTSSE
T ss_pred HHHHHhCCCC-CcEEEeccCCCCceecccc-----------cCCHHHHHHHHHHhccc--ccc-ccchhhHHHHhcCCCc
Confidence 4677799999 99999976 4444433321 12222222222222211 111 1222211112 344 3
Q ss_pred EEEEEec-CCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccc--cccccc
Q 008311 508 YIFLYGG-DDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPL--QLKSLV 565 (570)
Q Consensus 508 ~I~lYfg-ad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~--~~~~~~ 565 (570)
.+.+++. .+.+....+...+.+++++....+-.+++..+.-.+ +.+.++.- ++|.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~-~~~~~~i~~~~~P~~v 156 (184)
T PF13848_consen 97 PVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPR-LLKYFGIDEDDLPALV 156 (184)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHH-HHHHTTTTTSSSSEEE
T ss_pred eEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHH-HHHHcCCCCccCCEEE
Confidence 3555554 457888999999999998877788899998885444 44466665 788887
No 320
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=70.40 E-value=31 Score=28.42 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=14.5
Q ss_pred HhCCCCCCceEEEECCCCcEEcc
Q 008311 434 DVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 434 ~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
.+||+.++|++++ +|+++..
T Consensus 43 ~~ygv~~vPalvI---ng~~~~~ 62 (76)
T PF13192_consen 43 EKYGVMSVPALVI---NGKVVFV 62 (76)
T ss_dssp HHTT-SSSSEEEE---TTEEEEE
T ss_pred HHcCCCCCCEEEE---CCEEEEE
Confidence 6799999999954 4777654
No 321
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=68.91 E-value=9.4 Score=34.98 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=46.3
Q ss_pred CCeEEEEEecCC-Cch--HH--HHHHHHHHHHhhC--CCCEEEEEEecCCchhhhhhcccccccccccc
Q 008311 505 EGKYIFLYGGDD-VEW--VR--KFTTAARSVANTA--RIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 505 egk~I~lYfgad-~~w--~r--~FT~~l~~vy~~~--~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~ 566 (570)
.+..+-++|.+. |.| || ...|.+.+++.+. ...+-++-|.-|.. .++.+-+++.++|||++
T Consensus 26 ~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~-~~La~~~~I~~iPTl~l 93 (120)
T cd03065 26 YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD-AKVAKKLGLDEEDSIYV 93 (120)
T ss_pred CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC-HHHHHHcCCccccEEEE
Confidence 345777888888 888 99 6677777877653 55678888887765 56677889999999864
No 322
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=68.40 E-value=8.1 Score=40.06 Aligned_cols=41 Identities=10% Similarity=0.189 Sum_probs=31.8
Q ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc
Q 008311 505 EGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK 548 (570)
Q Consensus 505 egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~ 548 (570)
+...|++| ..+|+-|++|.|.++...+.-| |+++.||-|..
T Consensus 151 ~~gL~fFy-~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~ 191 (256)
T TIGR02739 151 SYGLFFFY-RGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGT 191 (256)
T ss_pred ceeEEEEE-CCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCC
Confidence 33445554 4569999999999999987666 88999998864
No 323
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=68.07 E-value=8.9 Score=32.80 Aligned_cols=49 Identities=12% Similarity=0.115 Sum_probs=33.7
Q ss_pred CchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccccccccccCCC
Q 008311 517 VEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 517 ~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~~~~ 569 (570)
||+|+ +++++-++.+++||.+-|..|.. ++.+.+.-+.-..|.+.++|+
T Consensus 23 Cp~C~----~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~ 72 (90)
T cd03028 23 CGFSR----KVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGE 72 (90)
T ss_pred CcHHH----HHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCE
Confidence 88884 45555566799999999987632 234445455567788888875
No 324
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=67.59 E-value=16 Score=32.04 Aligned_cols=15 Identities=7% Similarity=0.002 Sum_probs=12.1
Q ss_pred EEEecCCCHHhHHHH
Q 008311 351 LLISDLDISQEELSI 365 (570)
Q Consensus 351 L~FwAsWCpPCr~e~ 365 (570)
+-|+.+|||.|++--
T Consensus 11 vvysk~~Cp~C~~ak 25 (99)
T TIGR02189 11 VIFSRSSCCMCHVVK 25 (99)
T ss_pred EEEECCCCHHHHHHH
Confidence 348999999999654
No 325
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=67.37 E-value=16 Score=30.95 Aligned_cols=20 Identities=5% Similarity=0.027 Sum_probs=15.2
Q ss_pred EEEEecCCCHHhHHHH--HHHH
Q 008311 350 LLLISDLDISQEELSI--LEQI 369 (570)
Q Consensus 350 lL~FwAsWCpPCr~e~--L~~i 369 (570)
+..|+.+|||.|..-- |.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~ 23 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKL 23 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHh
Confidence 4569999999999865 5443
No 326
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=67.37 E-value=18 Score=33.38 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=38.4
Q ss_pred cCCeEEEEEe--cC-----C-CchHHHHHHHHHHHHhhCCCCEE--EEEEec----CCchhhhhh--ccccccccccc
Q 008311 504 KEGKYIFLYG--GD-----D-VEWVRKFTTAARSVANTARIPLE--MVYVGK----STKRDKCGE--SWQPLQLKSLV 565 (570)
Q Consensus 504 ~egk~I~lYf--ga-----d-~~w~r~FT~~l~~vy~~~~~~fE--iv~Vs~----d~~~e~~~~--~~~~~~~~~~~ 565 (570)
..|+.++||| |. . ||.|++=-|.+.++.+++..+.- .++||. .++...||+ -++.-.+|||+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi 94 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLI 94 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEE
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEE
Confidence 3566666666 32 2 99999999999998887544444 456665 335568888 68999999987
No 327
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=65.92 E-value=15 Score=29.39 Aligned_cols=55 Identities=22% Similarity=0.196 Sum_probs=40.4
Q ss_pred EEecCCCchHHHHHHHHHHHHhh--CCCCEEEEEEecCCchhhhhhcccccccccccc-CCC
Q 008311 511 LYGGDDVEWVRKFTTAARSVANT--ARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVT-SGK 569 (570)
Q Consensus 511 lYfgad~~w~r~FT~~l~~vy~~--~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~-~~~ 569 (570)
||+...|++|++ +.-+..+ .|.+||.+.+...+..+.+++....-.+|.|++ +|.
T Consensus 3 Ly~~~~s~~~~~----~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~ 60 (73)
T cd03049 3 LLYSPTSPYVRK----VRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGE 60 (73)
T ss_pred EecCCCCcHHHH----HHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCC
Confidence 788888988864 3333344 689999999986666677888877788899886 553
No 328
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=65.60 E-value=13 Score=30.01 Aligned_cols=15 Identities=13% Similarity=-0.017 Sum_probs=12.5
Q ss_pred EEEecCCCHHhHHHH
Q 008311 351 LLISDLDISQEELSI 365 (570)
Q Consensus 351 L~FwAsWCpPCr~e~ 365 (570)
..|+.+|||.|+.-.
T Consensus 4 ~ly~~~~C~~C~ka~ 18 (73)
T cd03027 4 TIYSRLGCEDCTAVR 18 (73)
T ss_pred EEEecCCChhHHHHH
Confidence 357889999999876
No 329
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=65.47 E-value=13 Score=29.65 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=36.8
Q ss_pred EEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccC-CC
Q 008311 511 LYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTS-GK 569 (570)
Q Consensus 511 lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~-~~ 569 (570)
||+...|+.|++ ++-+-...|.+||.+.+..+..... .+....-.+|.|+++ |.
T Consensus 3 Ly~~~~~p~~~r----vr~~L~~~gl~~~~~~~~~~~~~~~-~~~~~~~~vP~L~~~~~~ 57 (71)
T cd03037 3 LYIYEHCPFCVK----ARMIAGLKNIPVEQIILQNDDEATP-IRMIGAKQVPILEKDDGS 57 (71)
T ss_pred eEecCCCcHhHH----HHHHHHHcCCCeEEEECCCCchHHH-HHhcCCCccCEEEeCCCe
Confidence 788888999974 4444466799999999886543333 333444567888775 54
No 330
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=63.92 E-value=12 Score=32.76 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=32.2
Q ss_pred CCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccccccccccCCC
Q 008311 516 DVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 516 d~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~~~~~~~~~~ 569 (570)
.||||+ .++++-++.|++|+.+-|..+.. ++.+++.-+.-..|.+.++|+
T Consensus 26 ~Cp~C~----~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~ 76 (97)
T TIGR00365 26 QCGFSA----RAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGE 76 (97)
T ss_pred CCchHH----HHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCE
Confidence 499995 45666666799999998865421 223333334446777878775
No 331
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=63.82 E-value=12 Score=30.52 Aligned_cols=15 Identities=0% Similarity=-0.241 Sum_probs=12.6
Q ss_pred EEEecCCCHHhHHHH
Q 008311 351 LLISDLDISQEELSI 365 (570)
Q Consensus 351 L~FwAsWCpPCr~e~ 365 (570)
..|+.+|||.|..--
T Consensus 2 ~ly~~~~Cp~C~~a~ 16 (79)
T TIGR02181 2 TIYTKPYCPYCTRAK 16 (79)
T ss_pred EEEecCCChhHHHHH
Confidence 458999999998865
No 332
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=62.53 E-value=15 Score=34.32 Aligned_cols=40 Identities=10% Similarity=-0.008 Sum_probs=33.0
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEec
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPI 391 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsI 391 (570)
.+++.++.|+.--||.|+.+- +.++.+++. .++.+.++++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~-------~~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP-------KDVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC-------CCceEEEcCC
Confidence 789999999999999999998 888877763 3577777775
No 333
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=62.49 E-value=18 Score=29.03 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=38.5
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccc-ccccccccCC
Q 008311 510 FLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQP-LQLKSLVTSG 568 (570)
Q Consensus 510 ~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~-~~~~~~~~~~ 568 (570)
-||+...|++|++=.- +..+.|.++|.+.++-......+++..-. -.+|.|+.+|
T Consensus 2 ~Ly~~~~sp~~~~v~~----~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~ 57 (74)
T cd03058 2 KLLGAWASPFVLRVRI----ALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNG 57 (74)
T ss_pred EEEECCCCchHHHHHH----HHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECC
Confidence 3788888998865443 33556999999988776555666664432 4788888766
No 334
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=59.56 E-value=20 Score=37.12 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=31.3
Q ss_pred cCCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC
Q 008311 504 KEGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST 547 (570)
Q Consensus 504 ~egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~ 547 (570)
.+...+++|. .+|+-|++|.|.++...+..| |+++-||-|.
T Consensus 143 ~~~GL~fFy~-s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG 183 (248)
T PRK13703 143 EHYGLMFFYR-GQDPIDGQLAQVINDFRDTYG--LSVIPVSVDG 183 (248)
T ss_pred hcceEEEEEC-CCCchhHHHHHHHHHHHHHhC--CeEEEEecCC
Confidence 3444555554 569999999999999987655 4888888876
No 335
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=59.51 E-value=22 Score=28.49 Aligned_cols=15 Identities=0% Similarity=-0.204 Sum_probs=12.8
Q ss_pred EEEecCCCHHhHHHH
Q 008311 351 LLISDLDISQEELSI 365 (570)
Q Consensus 351 L~FwAsWCpPCr~e~ 365 (570)
..|+.+|||.|..--
T Consensus 3 ~ly~~~~Cp~C~~ak 17 (75)
T cd03418 3 EIYTKPNCPYCVRAK 17 (75)
T ss_pred EEEeCCCChHHHHHH
Confidence 468999999999865
No 336
>PRK10638 glutaredoxin 3; Provisional
Probab=59.47 E-value=47 Score=27.58 Aligned_cols=15 Identities=0% Similarity=-0.197 Sum_probs=12.6
Q ss_pred EEEecCCCHHhHHHH
Q 008311 351 LLISDLDISQEELSI 365 (570)
Q Consensus 351 L~FwAsWCpPCr~e~ 365 (570)
..|+..|||.|+.-.
T Consensus 5 ~ly~~~~Cp~C~~a~ 19 (83)
T PRK10638 5 EIYTKATCPFCHRAK 19 (83)
T ss_pred EEEECCCChhHHHHH
Confidence 468899999999876
No 337
>PRK10329 glutaredoxin-like protein; Provisional
Probab=58.30 E-value=28 Score=29.37 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=12.3
Q ss_pred EEEecCCCHHhHHHH
Q 008311 351 LLISDLDISQEELSI 365 (570)
Q Consensus 351 L~FwAsWCpPCr~e~ 365 (570)
..|+..|||+|..--
T Consensus 4 ~lYt~~~Cp~C~~ak 18 (81)
T PRK10329 4 TIYTRNDCVQCHATK 18 (81)
T ss_pred EEEeCCCCHhHHHHH
Confidence 458999999999854
No 338
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=58.01 E-value=43 Score=28.57 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=14.3
Q ss_pred cCCCEEEEEEec-----CCCHHhHHHH
Q 008311 344 LRRKNVLLLISD-----LDISQEELSI 365 (570)
Q Consensus 344 LkGKvVlL~FwA-----sWCpPCr~e~ 365 (570)
++++.|+|+ +. +|||.|..--
T Consensus 5 i~~~~vvvf-~k~~~~~~~Cp~C~~ak 30 (90)
T cd03028 5 IKENPVVLF-MKGTPEEPRCGFSRKVV 30 (90)
T ss_pred hccCCEEEE-EcCCCCCCCCcHHHHHH
Confidence 455666664 44 6999998754
No 339
>smart00594 UAS UAS domain.
Probab=57.48 E-value=24 Score=31.82 Aligned_cols=66 Identities=9% Similarity=0.126 Sum_probs=40.3
Q ss_pred ccccCCeEEEEEecCC-CchHHHHHHHH---HHHHhhCCCCEEEEEEecC-Cchhhhhhcccccccccccc
Q 008311 501 DWIKEGKYIFLYGGDD-VEWVRKFTTAA---RSVANTARIPLEMVYVGKS-TKRDKCGESWQPLQLKSLVT 566 (570)
Q Consensus 501 ~~~~egk~I~lYfgad-~~w~r~FT~~l---~~vy~~~~~~fEiv~Vs~d-~~~e~~~~~~~~~~~~~~~~ 566 (570)
..-.++|.+.||+.++ |++|+.|.... .++.+-.+.+|=.+-+.-. ....++.+.+++-+.|++++
T Consensus 22 ~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 22 EASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAI 92 (122)
T ss_pred HHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence 3347899999999777 99999997642 1122222334322222222 22346777777778888765
No 340
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=55.96 E-value=19 Score=35.35 Aligned_cols=54 Identities=4% Similarity=0.007 Sum_probs=41.8
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHhh-CCCCEEEEEEecC-------Cchhhhhhccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVANT-ARIPLEMVYVGKS-------TKRDKCGESWQ 557 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d-------~~~e~~~~~~~ 557 (570)
...||.+-|.+-|. |++|++ .+.|.++|++ .+..|+|+-++.+ ++.+.+++..+
T Consensus 22 ~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~ 84 (183)
T PRK10606 22 KYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCR 84 (183)
T ss_pred HhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHH
Confidence 46799999999877 999988 5689999976 4567999999875 34556666553
No 341
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=55.93 E-value=87 Score=30.48 Aligned_cols=108 Identities=19% Similarity=0.295 Sum_probs=61.8
Q ss_pred CCeeeccccCCCEEEEEEecCCCHHhHHHH---HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhh--HHHHHHHH
Q 008311 336 KRRVNIEVLRRKNVLLLISDLDISQEELSI---LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPT--QKKFETLQ 410 (570)
Q Consensus 336 G~~Vsls~LkGKvVlL~FwAsWCpPCr~e~---L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~--~~~F~~~~ 410 (570)
.+.-+...|.||+-++..-|..- ...++ |.+.-++.+= .++.|+...|-=.| +.-|.... +...++-.
T Consensus 27 y~~W~s~~l~GKVrviq~iAGr~--sake~N~~l~~aik~a~f----~~d~yqtttIiN~d-DAi~gt~~fVrss~e~~k 99 (160)
T PF09695_consen 27 YQPWNSAQLPGKVRVIQHIAGRS--SAKEMNAPLIEAIKAAKF----PHDKYQTTTIINLD-DAIWGTGGFVRSSAEDSK 99 (160)
T ss_pred ccccCccccCCCEEEEEEeccCC--chhHhhHHHHHHHHHcCC----CccceeEEEEEecc-cccccchHHHHHHHHHhh
Confidence 34445567999997776665543 33333 4444443321 24568877663111 11232221 22233445
Q ss_pred cCCCceeeccccccChHHHHHHHHhCCCCCC-ceEEEECCCCcEEcc
Q 008311 411 SSMPWYTVYHPTLIDRAVIRYVKDVWHFKNK-PILVVLDPQGRVVSP 456 (570)
Q Consensus 411 ~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~I-PtlVVLDpqGkVv~~ 456 (570)
++.||-.+- +|..+ .++..|+...- -..+|+|++|+|...
T Consensus 100 k~~p~s~~v----lD~~G--~~~~aW~L~~~~SaiiVlDK~G~V~F~ 140 (160)
T PF09695_consen 100 KEFPWSQFV----LDSNG--VVRKAWQLQEESSAIIVLDKQGKVQFV 140 (160)
T ss_pred hhCCCcEEE----EcCCC--ceeccccCCCCCceEEEEcCCccEEEE
Confidence 678997554 36543 57889998765 567889999999753
No 342
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=55.28 E-value=22 Score=28.05 Aligned_cols=55 Identities=18% Similarity=0.032 Sum_probs=38.3
Q ss_pred EEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecC---CchhhhhhccccccccccccCCC
Q 008311 511 LYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKS---TKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 511 lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d---~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
||+...++.|+. ++.+..+.|.+||.+.+.-. +..+.+++....-.+|+|+.+|.
T Consensus 3 L~~~~~~~~~~~----~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~ 60 (73)
T cd03042 3 LYSYFRSSASYR----VRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGL 60 (73)
T ss_pred EecCCCCcchHH----HHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCE
Confidence 677666555542 34444667999999988753 34567888777788899887764
No 343
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=54.57 E-value=69 Score=31.91 Aligned_cols=114 Identities=12% Similarity=0.128 Sum_probs=71.3
Q ss_pred CCCcccC-CCCCeeeccccCCCEEEEEEec--CCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChh
Q 008311 327 LQPLVDG-STKRRVNIEVLRRKNVLLLISD--LDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDP 401 (570)
Q Consensus 327 ~~pl~~g-~~G~~Vsls~LkGKvVlL~FwA--sWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~ 401 (570)
..|.|+. .+..++..-++-|---.+.||- .--|-|-.|+ +.++--++. +.++..++.|+.| -+
T Consensus 11 ~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~------KRnvKlialS~d~------ve 78 (224)
T KOG0854|consen 11 TVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFD------KRNVKLIALSVDD------VE 78 (224)
T ss_pred cCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhh------hcCceEEEeehhh------HH
Confidence 3566653 3344788888888666666774 4578899999 888777875 2479999999732 22
Q ss_pred hHHHHH----HHHcCCCceeeccccccChHHHHHHHHhCC--------CCCCc----eEEEECCCCcEEc
Q 008311 402 TQKKFE----TLQSSMPWYTVYHPTLIDRAVIRYVKDVWH--------FKNKP----ILVVLDPQGRVVS 455 (570)
Q Consensus 402 ~~~~F~----~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~--------V~~IP----tlVVLDpqGkVv~ 455 (570)
+.+.|- +|....|- .++||.+.|+ .+.++-.|+ -.++| .++|+||+-|+.-
T Consensus 79 sH~~Wi~DIks~~~~~~~-~~~yPIIaD~--~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirL 145 (224)
T KOG0854|consen 79 SHKDWIKDIKSYAKVKNH-SVPYPIIADP--NRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRL 145 (224)
T ss_pred HHHHHHHHHHHHHhccCC-CCCCCeecCC--chhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEE
Confidence 333442 23333342 5889977665 344543343 33444 4678899888753
No 344
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=53.31 E-value=25 Score=28.37 Aligned_cols=53 Identities=23% Similarity=0.212 Sum_probs=35.8
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTS 567 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~ 567 (570)
|-||+...|++|++ ++.+..+.|.++|.+.++... ...++ ....-.+|.|+.+
T Consensus 2 i~Ly~~~~~p~c~k----v~~~L~~~gi~y~~~~~~~~~-~~~~~-~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCK----VRAFLDYHGIPYEVVEVNPVS-RKEIK-WSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHH----HHHHHHHCCCceEEEECCchh-HHHHH-HhCCCccCEEEEC
Confidence 56899888999965 444556679999999885432 22333 2344578888765
No 345
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=52.73 E-value=24 Score=28.84 Aligned_cols=55 Identities=13% Similarity=-0.028 Sum_probs=39.3
Q ss_pred EEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecC---CchhhhhhccccccccccccCCC
Q 008311 511 LYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKS---TKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 511 lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d---~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
||+...|+.|+.--- +.++.|.+||.+.|.-. +..+.+++..-.=.+|.|+.+|.
T Consensus 3 ly~~~~s~~s~rv~~----~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~ 60 (73)
T cd03052 3 LYHWTQSFSSQKVRL----VIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDN 60 (73)
T ss_pred EecCCCCccHHHHHH----HHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCE
Confidence 788888888855433 33566999999988653 34456777777778888887764
No 346
>PRK15000 peroxidase; Provisional
Probab=52.70 E-value=23 Score=34.96 Aligned_cols=45 Identities=18% Similarity=-0.014 Sum_probs=35.8
Q ss_pred CCeEEEEEe--cCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCch
Q 008311 505 EGKYIFLYG--GDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKR 549 (570)
Q Consensus 505 egk~I~lYf--gad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~ 549 (570)
.||++-|+| ++.|+.|+.=.+.+.+.|.+ .+.++|++-||.|...
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~ 80 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEF 80 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 688776666 45599999988888888876 4567999999999765
No 347
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=51.69 E-value=66 Score=28.01 Aligned_cols=21 Identities=10% Similarity=0.126 Sum_probs=14.0
Q ss_pred CCCEEEEEEe----cCCCHHhHHHH
Q 008311 345 RRKNVLLLIS----DLDISQEELSI 365 (570)
Q Consensus 345 kGKvVlL~Fw----AsWCpPCr~e~ 365 (570)
+.+.|+||-. ++|||.|..--
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak 34 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAV 34 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHH
Confidence 4455666543 38999998754
No 348
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=51.49 E-value=23 Score=34.39 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=31.1
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCC
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKST 547 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~ 547 (570)
+++....+|++- ||.|++|.+.+.+ ...+..+.++.++...
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~--~~~~v~v~~~~~p~~~ 117 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP--NADGVTVRIFPVPILG 117 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh--ccCceEEEEEEcCcCC
Confidence 466666666666 9999999999987 4457888888887654
No 349
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.30 E-value=27 Score=35.67 Aligned_cols=74 Identities=8% Similarity=0.147 Sum_probs=47.2
Q ss_pred CCCCcccCCCCCeeeccc-cCCCEEEE---EE----ecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCC
Q 008311 326 DLQPLVDGSTKRRVNIEV-LRRKNVLL---LI----SDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHF 395 (570)
Q Consensus 326 ~~~pl~~g~~G~~Vsls~-LkGKvVlL---~F----wAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s 395 (570)
+..-.|++.+| +++|.+ |.||--|+ ++ |..-||.|-... +...-..+.. .++-+|.||
T Consensus 52 ~K~Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~------~dv~lv~Vs----- 119 (247)
T COG4312 52 DKDYVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEH------HDVTLVAVS----- 119 (247)
T ss_pred cceeEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhh------cCceEEEEe-----
Confidence 34567899998 578888 56764332 33 444599998877 6666677752 367888887
Q ss_pred CCCChhhHHHHHHHHcCCCc
Q 008311 396 IHWDDPTQKKFETLQSSMPW 415 (570)
Q Consensus 396 ~~w~D~~~~~F~~~~~~MPW 415 (570)
..-.+.+..+++.|.|
T Consensus 120 ----RAPl~~l~~~k~rmGW 135 (247)
T COG4312 120 ----RAPLEELVAYKRRMGW 135 (247)
T ss_pred ----cCcHHHHHHHHHhcCC
Confidence 2234555555554444
No 350
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=51.01 E-value=26 Score=30.61 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=36.3
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhcccccc
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQ 560 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~ 560 (570)
|-||+..+|++|++ +.+..++.|++||.+-+.++.. .+++++.++-.+
T Consensus 1 i~iY~~~~C~~c~k----a~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 1 ITIYGNPNCSTSRK----ALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKLG 49 (105)
T ss_pred CEEEECCCCHHHHH----HHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhcC
Confidence 35899999999964 5566677799999999988664 557776665544
No 351
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=50.49 E-value=21 Score=28.88 Aligned_cols=55 Identities=15% Similarity=-0.103 Sum_probs=37.5
Q ss_pred EEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311 511 LYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 511 lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
||+...++.++ .++-+.++.|.++|.+.|+-+...+.++...-.-.+|.|+.+|+
T Consensus 4 Ly~~~~~~~~~----~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~ 58 (73)
T cd03076 4 LTYFPVRGRAE----AIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDL 58 (73)
T ss_pred EEEeCCcchHH----HHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECCE
Confidence 55544455554 44555567799999999986544456776665667899887765
No 352
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=50.30 E-value=29 Score=28.12 Aligned_cols=37 Identities=3% Similarity=-0.107 Sum_probs=25.2
Q ss_pred EEecCCCchHHHHHHHHHHHHhh--CCCCEEEEEEecCC
Q 008311 511 LYGGDDVEWVRKFTTAARSVANT--ARIPLEMVYVGKST 547 (570)
Q Consensus 511 lYfgad~~w~r~FT~~l~~vy~~--~~~~fEiv~Vs~d~ 547 (570)
+|+.=.||||+.|-+.+.++.+. .+..++.+.++-..
T Consensus 3 ~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 41 (98)
T cd02972 3 EFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLG 41 (98)
T ss_pred EEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCC
Confidence 45555599999999999998543 34555555554443
No 353
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=50.27 E-value=10 Score=35.58 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=20.1
Q ss_pred HHHHhCCCCCCceEEEECCCCcEEcc
Q 008311 431 YVKDVWHFKNKPILVVLDPQGRVVSP 456 (570)
Q Consensus 431 ~L~~~y~V~~IPtlVVLDpqGkVv~~ 456 (570)
.++.+|||+++|+++++. +|+.+..
T Consensus 82 ~LA~~fgV~siPTLl~Fk-dGk~v~~ 106 (132)
T PRK11509 82 AIGDRFGVFRFPATLVFT-GGNYRGV 106 (132)
T ss_pred HHHHHcCCccCCEEEEEE-CCEEEEE
Confidence 478889999999999884 6777654
No 354
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=49.99 E-value=69 Score=35.37 Aligned_cols=47 Identities=23% Similarity=0.410 Sum_probs=39.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHh----hhccHHHHHHHHHhhhh
Q 008311 262 AWELSTLAHKLKNIHESLKKLMATCYRHIE----EKKSHEAYQMLVKLFDS 308 (570)
Q Consensus 262 ~~els~~~~kl~~i~~~L~~~l~~c~~~i~----~~~~~e~Y~~l~~lf~~ 308 (570)
--++.++.+-|..++.-|-.|+++|..=+. +....++|+.+++....
T Consensus 198 ~~~l~~le~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~ 248 (412)
T PF04108_consen 198 LKELHSLEQEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLEN 248 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHc
Confidence 356788889999999999999999998777 55667889988888754
No 355
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=49.71 E-value=24 Score=34.41 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=45.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
+-||+...|+.|+.-.-.| ++.|.++|++.|..++..+.+++..-.-.+|.|+.+|.
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L----~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~ 67 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVL----AEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDREL 67 (211)
T ss_pred eEEeCCCCChhHHHHHHHH----HHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCE
Confidence 6799888788887655544 44599999999987766678888877788999988775
No 356
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=49.71 E-value=33 Score=26.93 Aligned_cols=56 Identities=23% Similarity=0.100 Sum_probs=39.2
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecC---CchhhhhhccccccccccccCCC
Q 008311 510 FLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKS---TKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 510 ~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d---~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
-||+...|+.|+.- .-+.++.|.++|.+.|.-. ...+.+++..-.-.+|.|+.+|+
T Consensus 2 ~Ly~~~~~~~~~~v----~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~ 60 (73)
T cd03056 2 KLYGFPLSGNCYKV----RLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGR 60 (73)
T ss_pred EEEeCCCCccHHHH----HHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCE
Confidence 37887889988744 3334556999999988643 23456777666667899887764
No 357
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=49.54 E-value=37 Score=28.41 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=39.7
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCC
Q 008311 508 YIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSG 568 (570)
Q Consensus 508 ~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~ 568 (570)
.|-||+..+|.-|.+.-..|.++..+ .+|++..|.-+.+.+-..+|-. .+|-|.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~--~~~~l~~vDI~~d~~l~~~Y~~--~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAE--FPFELEEVDIDEDPELFEKYGY--RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTT--STCEEEEEETTTTHHHHHHSCT--STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhh--cCceEEEEECCCCHHHHHHhcC--CCCEEEEcC
Confidence 36789999999999888888876433 3477777777776665666654 566676666
No 358
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=48.78 E-value=29 Score=33.94 Aligned_cols=48 Identities=10% Similarity=0.037 Sum_probs=37.1
Q ss_pred ccCCeEEEEEec--CCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchh
Q 008311 503 IKEGKYIFLYGG--DDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRD 550 (570)
Q Consensus 503 ~~egk~I~lYfg--ad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e 550 (570)
...||++.|||. +.|++|..=...+.+.+++ .+.+++++.||.|...+
T Consensus 33 d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~ 83 (199)
T PTZ00253 33 SYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYA 83 (199)
T ss_pred HHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHH
Confidence 356888777775 4499998766778888765 45689999999998765
No 359
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.35 E-value=21 Score=36.48 Aligned_cols=113 Identities=16% Similarity=0.136 Sum_probs=63.4
Q ss_pred CCCCcccCCC-------CCeeecccc--CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccC
Q 008311 326 DLQPLVDGST-------KRRVNIEVL--RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDH 394 (570)
Q Consensus 326 ~~~pl~~g~~-------G~~Vsls~L--kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~ 394 (570)
.++|.|.|.+ ++....+.- +.++=++-|.|.|.|.|+.+- ..++-.++..+ +-+|-=|=|.
T Consensus 115 ~~eP~y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~----~lkFGkvDiG---- 186 (265)
T KOG0914|consen 115 APEPAYSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN----LLKFGKVDIG---- 186 (265)
T ss_pred cCccccCCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCC----CCcccceeec----
Confidence 4567777753 222222222 346789999999999999998 77777777521 1122222222
Q ss_pred CCCCChhhHHHHHHHHcCCCceeeccccccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhc-CCCCCCC
Q 008311 395 FIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWG-SNAFPFT 473 (570)
Q Consensus 395 s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G-~~aFPFt 473 (570)
.|.|.. ++|. |. + .=+-+.+||.++.. +|+-+.+ +..+...| .-.|||+
T Consensus 187 --rfpd~a-~kfr----------is-----~---------s~~srQLPT~ilFq-~gkE~~R--rP~vd~~gra~s~~fS 236 (265)
T KOG0914|consen 187 --RFPDVA-AKFR----------IS-----L---------SPGSRQLPTYILFQ-KGKEVSR--RPDVDVKGRAVSFPFS 236 (265)
T ss_pred --cCcChH-Hhee----------ec-----c---------CcccccCCeEEEEc-cchhhhc--CccccccCCccccccc
Confidence 233322 1221 11 0 01224589988774 6777665 44565555 4568887
Q ss_pred chh
Q 008311 474 SLR 476 (570)
Q Consensus 474 ~~~ 476 (570)
+.-
T Consensus 237 een 239 (265)
T KOG0914|consen 237 EEN 239 (265)
T ss_pred HHH
Confidence 654
No 360
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=48.26 E-value=31 Score=33.86 Aligned_cols=47 Identities=11% Similarity=0.086 Sum_probs=36.9
Q ss_pred cCCeEEEEEe--cCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchh
Q 008311 504 KEGKYIFLYG--GDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRD 550 (570)
Q Consensus 504 ~egk~I~lYf--gad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e 550 (570)
..||.+-||| ++.|+.|..=.+.+.+.+.+ .+..++++-||.|.+..
T Consensus 29 ~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~ 78 (187)
T PRK10382 29 TEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFT 78 (187)
T ss_pred hCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHH
Confidence 4677766665 66699999888888888866 45679999999988755
No 361
>PRK13190 putative peroxiredoxin; Provisional
Probab=47.98 E-value=30 Score=34.14 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=35.4
Q ss_pred cCCeEEEE--EecCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchh
Q 008311 504 KEGKYIFL--YGGDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRD 550 (570)
Q Consensus 504 ~egk~I~l--Yfgad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e 550 (570)
..||.+-| |-++.|++|+.=.+.+.+.+.+ .+.+++++-||.|....
T Consensus 25 ~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~ 74 (202)
T PRK13190 25 YKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYS 74 (202)
T ss_pred hCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence 36886555 3466699999888888888765 45679999999997643
No 362
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=47.70 E-value=24 Score=31.93 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=40.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhcccccccccc
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPLQLKSL 564 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~~ 564 (570)
|-||+-.+|..|| ++.+.-++.|+.||.+-+-++. +.+++++.++..++..|
T Consensus 2 i~iy~~p~C~~cr----kA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~g~~~l 54 (113)
T cd03033 2 IIFYEKPGCANNA----RQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGDLPVAEW 54 (113)
T ss_pred EEEEECCCCHHHH----HHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHHcCHHHH
Confidence 5699999999997 4555557779999999888877 56688887776665443
No 363
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=47.64 E-value=41 Score=30.70 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=30.4
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhC--CCCEEEEEEecC
Q 008311 508 YIFLYGGDDVEWVRKFTTAARSVANTA--RIPLEMVYVGKS 546 (570)
Q Consensus 508 ~I~lYfgad~~w~r~FT~~l~~vy~~~--~~~fEiv~Vs~d 546 (570)
.|-+||.=.||+|++|-+.+.++.++. +..+.++|+.--
T Consensus 15 ~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 15 TVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred EEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 466777666999999999999988774 678888887653
No 364
>PRK13189 peroxiredoxin; Provisional
Probab=47.10 E-value=31 Score=34.69 Aligned_cols=47 Identities=13% Similarity=0.055 Sum_probs=35.9
Q ss_pred cCCeEEEE--EecCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchh
Q 008311 504 KEGKYIFL--YGGDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRD 550 (570)
Q Consensus 504 ~egk~I~l--Yfgad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e 550 (570)
..||++.| |-++.|+.|..=.+.+.+.|.+ .+.+++++-||.|....
T Consensus 33 ~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~ 82 (222)
T PRK13189 33 YKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFS 82 (222)
T ss_pred hCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHH
Confidence 36886544 4466699999888888888865 45679999999998654
No 365
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=45.95 E-value=40 Score=27.14 Aligned_cols=56 Identities=13% Similarity=-0.012 Sum_probs=39.3
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc---hhhhhhccccccccccccCCC
Q 008311 510 FLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK---RDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 510 ~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~---~e~~~~~~~~~~~~~~~~~~~ 569 (570)
-||+...++.||.---.| .+.|.++|.+.|.-.+. .+.+++..-.-.+|.|+.+|.
T Consensus 2 ~ly~~~~s~~~~~v~~~l----~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~ 60 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFL----KLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDF 60 (76)
T ss_pred EEeeCCCChhHHHHHHHH----HHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCE
Confidence 378877788886554434 45699999999875432 356777777778888887664
No 366
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=43.89 E-value=33 Score=30.63 Aligned_cols=48 Identities=8% Similarity=0.093 Sum_probs=36.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhcccccc
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPLQ 560 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~ 560 (570)
|-||+...|+.||+ +.+.-++.|++||.+-+.++. .++++++.++-.+
T Consensus 1 i~iY~~~~C~~c~k----a~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~~ 49 (111)
T cd03036 1 LKFYEYPKCSTCRK----AKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKSG 49 (111)
T ss_pred CEEEECCCCHHHHH----HHHHHHHcCCceEEecccCCcccHHHHHHHHHHcC
Confidence 34899999999964 555556679999999998877 4567776666544
No 367
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=43.32 E-value=39 Score=35.17 Aligned_cols=45 Identities=9% Similarity=-0.136 Sum_probs=35.0
Q ss_pred CCeEEEEEe--cCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCch
Q 008311 505 EGKYIFLYG--GDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKR 549 (570)
Q Consensus 505 egk~I~lYf--gad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~ 549 (570)
.||++-||| ++.|++|..=.+.+.+.|++ .+..+|++-||.|.+.
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~ 144 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPF 144 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 576665555 66699999877788888876 4567999999999863
No 368
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=43.23 E-value=52 Score=26.61 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=39.2
Q ss_pred EEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecC--CchhhhhhccccccccccccC-CC
Q 008311 511 LYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKS--TKRDKCGESWQPLQLKSLVTS-GK 569 (570)
Q Consensus 511 lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d--~~~e~~~~~~~~~~~~~~~~~-~~ 569 (570)
||+...|+.++.-.- +.+..|.+||.+.|... ...+.+++..-.-.+|+|+.+ |.
T Consensus 3 Ly~~~~~~~~~~~~~----~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~ 60 (75)
T cd03044 3 LYTYPGNPRSLKILA----AAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGF 60 (75)
T ss_pred EecCCCCccHHHHHH----HHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCC
Confidence 676666777764333 33556999999999875 345668888778889999984 64
No 369
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=42.52 E-value=49 Score=33.25 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=40.6
Q ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhcccccccc
Q 008311 505 EGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLK 562 (570)
Q Consensus 505 egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~ 562 (570)
.+-.+.||--+||+.|-.+...+ .+.+..|.+++||++.+.+.+|.--....|+
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l----~a~~~~~Diylvgs~~dD~~Ir~WA~~~~Id 161 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRL----LADNAPLDLYLVGSQGDDERIRQWANRHQID 161 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHH----hcCCCceeEEEecCCCCHHHHHHHHHHcCCC
Confidence 34455665567799998888777 3368899999999988888888766555554
No 370
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=42.35 E-value=40 Score=32.10 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=42.4
Q ss_pred EEEEecC------CCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhcccc----ccccccccCCC
Q 008311 509 IFLYGGD------DVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQP----LQLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfga------d~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~----~~~~~~~~~~~ 569 (570)
|-||... .||+|+ .++++-++.+++||-+=|+.|.. .+++++.+.. ...|.+.+.|+
T Consensus 2 VvlYttsl~giR~t~~~C~----~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~ 69 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCN----NVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGR 69 (147)
T ss_pred EEEEEcCCcCCCCcChhHH----HHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCE
Confidence 4588877 799994 45555566799999999987643 5567777665 67888888875
No 371
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=41.09 E-value=1.1e+02 Score=27.50 Aligned_cols=58 Identities=10% Similarity=0.169 Sum_probs=0.0
Q ss_pred EEEEecCCCHHhHHHHHHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccccccChHHH
Q 008311 350 LLLISDLDISQEELSILEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPTLIDRAVI 429 (570)
Q Consensus 350 lL~FwAsWCpPCr~e~L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~l~D~~~~ 429 (570)
++-||.+|||.|.. ++.+..++ +..+.|+=+. .+.+ ..+..
T Consensus 16 VVifSKs~C~~c~~--~k~ll~~~-------~v~~~vvELD--------~~~~----------------------g~eiq 56 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHR--AKELLSDL-------GVNPKVVELD--------EDED----------------------GSEIQ 56 (104)
T ss_pred EEEEECCcCchHHH--HHHHHHhC-------CCCCEEEEcc--------CCCC----------------------cHHHH
Q ss_pred HHHHHhCCCCCCceEEE
Q 008311 430 RYVKDVWHFKNKPILVV 446 (570)
Q Consensus 430 ~~L~~~y~V~~IPtlVV 446 (570)
+.+.+.-+-+..|.++|
T Consensus 57 ~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 57 KALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHHhcCCCCCCEEEE
No 372
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=40.91 E-value=36 Score=30.46 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=36.2
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhccccc
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPL 559 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~ 559 (570)
|-||+...|+.||+ +.+..++.|+.+|.+-+.++. +++++++.++-.
T Consensus 2 i~iY~~~~C~~c~k----a~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 2 IKLYTSPSCSSCRK----AKQWLEEHQIPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred EEEEeCCCCHHHHH----HHHHHHHCCCceEEEecCCCcchHHHHHHHHHHh
Confidence 56899999999965 555556679999999997765 455777777755
No 373
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=39.86 E-value=1.5e+02 Score=26.92 Aligned_cols=84 Identities=15% Similarity=0.125 Sum_probs=0.0
Q ss_pred eccccCCCE-EEEEEecCCCHHhHHHH---HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCc
Q 008311 340 NIEVLRRKN-VLLLISDLDISQEELSI---LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPW 415 (570)
Q Consensus 340 sls~LkGKv-VlL~FwAsWCpPCr~e~---L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW 415 (570)
+++++++|. ++|.|..+---|--.+. |.+-...+.+ | .|+++.+++.......
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~e---R-----di~v~~i~~~~~~~~~--------------- 58 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDE---R-----DIVVIVITGDGARSPG--------------- 58 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhcccc---C-----ceEEEEEeCCcccccc---------------
Q ss_pred eeeccccccChHHHHHHHHhCC--CCCCceEEEECCCCcE
Q 008311 416 YTVYHPTLIDRAVIRYVKDVWH--FKNKPILVVLDPQGRV 453 (570)
Q Consensus 416 ~aV~fP~l~D~~~~~~L~~~y~--V~~IPtlVVLDpqGkV 453 (570)
...+..-...+.+.|+ -.+ -++|+|+++|.+
T Consensus 59 ------~~~~~~~~~~lr~~l~~~~~~-f~~vLiGKDG~v 91 (118)
T PF13778_consen 59 ------KPLSPEDIQALRKRLRIPPGG-FTVVLIGKDGGV 91 (118)
T ss_pred ------CcCCHHHHHHHHHHhCCCCCc-eEEEEEeCCCcE
No 374
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=39.32 E-value=73 Score=25.40 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=41.2
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecC---CchhhhhhccccccccccccCCC
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKS---TKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d---~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
+=||+...|++|+.=.-. .++.|.++|.+.+.-. +..+.+++..-.-.+|.|+.+|.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~----l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~ 61 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLC----LEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDL 61 (76)
T ss_pred eEEEeCCCChhHHHHHHH----HHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCE
Confidence 447888888888654443 3556999999888753 34567888888888998887663
No 375
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=38.42 E-value=75 Score=25.58 Aligned_cols=15 Identities=13% Similarity=0.062 Sum_probs=12.7
Q ss_pred EEEecCCCHHhHHHH
Q 008311 351 LLISDLDISQEELSI 365 (570)
Q Consensus 351 L~FwAsWCpPCr~e~ 365 (570)
..|+..+||.|+.-.
T Consensus 2 ~ly~~~~Cp~C~~ak 16 (72)
T TIGR02194 2 TVYSKNNCVQCKMTK 16 (72)
T ss_pred EEEeCCCCHHHHHHH
Confidence 358899999999876
No 376
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=36.63 E-value=85 Score=34.59 Aligned_cols=16 Identities=6% Similarity=0.086 Sum_probs=12.8
Q ss_pred EEEEecCCCHHhHHHH
Q 008311 350 LLLISDLDISQEELSI 365 (570)
Q Consensus 350 lL~FwAsWCpPCr~e~ 365 (570)
+.-|+.+|||+|..--
T Consensus 4 V~vys~~~Cp~C~~aK 19 (410)
T PRK12759 4 VRIYTKTNCPFCDLAK 19 (410)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 3458999999998754
No 377
>PRK15113 glutathione S-transferase; Provisional
Probab=35.60 E-value=71 Score=31.19 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=42.3
Q ss_pred eEEEEEecCC--CchHHHHHHHHHHHHhhCCCCEEEEEEecCC---chhhhhhccccccccccccCCC
Q 008311 507 KYIFLYGGDD--VEWVRKFTTAARSVANTARIPLEMVYVGKST---KRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 507 k~I~lYfgad--~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~---~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
+.+-||++.+ +++|+.=-- +..+.|+++|++.|.-.+ ..+.+++..=.=.+|.|+.+|.
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~----~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~ 67 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFV----ALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDF 67 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHH----HHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCE
Confidence 3456998763 788854322 335669999999998543 4477888777778899988775
No 378
>PRK13599 putative peroxiredoxin; Provisional
Probab=35.21 E-value=60 Score=32.55 Aligned_cols=47 Identities=15% Similarity=0.069 Sum_probs=35.9
Q ss_pred cCCeEE--EEEecCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchh
Q 008311 504 KEGKYI--FLYGGDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRD 550 (570)
Q Consensus 504 ~egk~I--~lYfgad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e 550 (570)
..||.+ +.|-++.||.|+.=.+.+.+.+.+ .+..++++-||-|....
T Consensus 26 ~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~ 75 (215)
T PRK13599 26 YAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFS 75 (215)
T ss_pred HCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence 357653 455577799999988888888876 45678999999998643
No 379
>PRK13191 putative peroxiredoxin; Provisional
Probab=35.17 E-value=57 Score=32.69 Aligned_cols=47 Identities=9% Similarity=0.061 Sum_probs=36.0
Q ss_pred cCCeEEE--EEecCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCchh
Q 008311 504 KEGKYIF--LYGGDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKRD 550 (570)
Q Consensus 504 ~egk~I~--lYfgad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~e 550 (570)
..||.+. .|-++.|+.|..=.+.+.+.|.+ .+.+++++-||-|....
T Consensus 31 ~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~ 80 (215)
T PRK13191 31 YKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNIS 80 (215)
T ss_pred hCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 4677544 44466699999888888888876 45679999999998765
No 380
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=34.48 E-value=58 Score=33.39 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=26.4
Q ss_pred cCCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEE
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYV 543 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~V 543 (570)
.++|.+-.-|++- ||.||+|-..+.+..+..+..+.++.+
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 3566655556665 999999999988865443345555544
No 381
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=34.01 E-value=73 Score=29.54 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=36.3
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhcccccc
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPLQ 560 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~ 560 (570)
|-||+...|+.||+ +.+.-++.|+.||.+-+.++. +++++++.++-.+
T Consensus 2 i~iY~~~~C~~crk----A~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~ 50 (132)
T PRK13344 2 IKIYTISSCTSCKK----AKTWLNAHQLSYKEQNLGKEPLTKEEILAILTKTE 50 (132)
T ss_pred EEEEeCCCCHHHHH----HHHHHHHcCCCeEEEECCCCCCCHHHHHHHHHHhC
Confidence 56999999999976 555557779999999988777 4456666665543
No 382
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=33.98 E-value=1.9e+02 Score=30.24 Aligned_cols=92 Identities=20% Similarity=0.198 Sum_probs=56.6
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeecccc
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHPT 422 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP~ 422 (570)
++..|++.|+-..++.|...- |..+-.++. ...+|=|.. + ..|
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp--------~vKFvkI~a-------~------------~~~-------- 189 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYP--------EVKFVKIRA-------S------------KCP-------- 189 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T--------TSEEEEEEE-------C------------GCC--------
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC--------ceEEEEEeh-------h------------ccC--------
Confidence 456899999999999999877 888888874 245555542 0 001
Q ss_pred ccChHHHHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCchhHHHHhhhcC
Q 008311 423 LIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSLREEALWKEET 485 (570)
Q Consensus 423 l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~~~e~L~~e~~ 485 (570)
+...|..+++|++++.- +|.++.. -+.+. +.|++. |+..+.|.++.+..
T Consensus 190 ---------~~~~f~~~~LPtllvYk-~G~l~~~-~V~l~-~~~g~d--f~~~dlE~~L~~~G 238 (265)
T PF02114_consen 190 ---------ASENFPDKNLPTLLVYK-NGDLIGN-FVGLT-DLLGDD--FFTEDLEAFLIEYG 238 (265)
T ss_dssp ---------TTTTS-TTC-SEEEEEE-TTEEEEE-ECTGG-GCT-TT----HHHHHHHHHTTT
T ss_pred ---------cccCCcccCCCEEEEEE-CCEEEEe-EEehH-HhcCCC--CCHHHHHHHHHHcC
Confidence 12346778899999997 7876643 33333 334333 88889999987754
No 383
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=33.60 E-value=80 Score=25.05 Aligned_cols=54 Identities=13% Similarity=0.024 Sum_probs=37.0
Q ss_pred EEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecC---CchhhhhhccccccccccccCCC
Q 008311 511 LYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKS---TKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 511 lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d---~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
||+... .+++ .+.-+..+.|.++|.+.|... ...+.+++..-.-.+|.|+.+|+
T Consensus 3 l~~~~~-~~~~----~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~ 59 (76)
T cd03046 3 LYHLPR-SRSF----RILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDL 59 (76)
T ss_pred EEeCCC-CChH----HHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCE
Confidence 565443 4454 334445677999999999753 44567777777778899887775
No 384
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=33.43 E-value=76 Score=25.34 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=37.3
Q ss_pred EEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecC---CchhhhhhccccccccccccCCC
Q 008311 511 LYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKS---TKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 511 lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d---~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
||+....+.++.-.-.| .+.|.++|.+.++.. ...+.+++..-.-.+|.|+.+|.
T Consensus 3 l~~~~~s~~~~~v~~~L----~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~ 60 (73)
T cd03047 3 IWGRRSSINVQKVLWLL----DELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDF 60 (73)
T ss_pred EEecCCCcchHHHHHHH----HHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCE
Confidence 67766666665554444 445999999988642 23466777766677888877664
No 385
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=32.95 E-value=79 Score=25.12 Aligned_cols=54 Identities=17% Similarity=-0.073 Sum_probs=36.5
Q ss_pred EEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCch-hhhhhccccccccccccCC
Q 008311 511 LYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKR-DKCGESWQPLQLKSLVTSG 568 (570)
Q Consensus 511 lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~-e~~~~~~~~~~~~~~~~~~ 568 (570)
||+...++.|+ .++-+..+.|.++|.+.++..... ..++...-.-.+|.|+.+|
T Consensus 3 Ly~~~~~~~~~----~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~ 57 (72)
T cd03039 3 LTYFNIRGRGE----PIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDG 57 (72)
T ss_pred EEEEcCcchHH----HHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECC
Confidence 66665566554 444455677999999999764322 2366666777888887765
No 386
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=32.46 E-value=95 Score=25.38 Aligned_cols=43 Identities=14% Similarity=-0.015 Sum_probs=30.8
Q ss_pred HHHHHhhCCCCEEEEEEecCCch---hhhhhcccc-ccccccccC-CC
Q 008311 527 ARSVANTARIPLEMVYVGKSTKR---DKCGESWQP-LQLKSLVTS-GK 569 (570)
Q Consensus 527 l~~vy~~~~~~fEiv~Vs~d~~~---e~~~~~~~~-~~~~~~~~~-~~ 569 (570)
++-+..+.|.++|.+.|+-+..+ +++++.... -.+|.|+.+ |.
T Consensus 15 ~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~ 62 (76)
T PF02798_consen 15 IRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGF 62 (76)
T ss_dssp HHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTE
T ss_pred HHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCC
Confidence 33344578999999999975543 778887777 889999888 64
No 387
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=31.66 E-value=46 Score=27.48 Aligned_cols=17 Identities=0% Similarity=-0.079 Sum_probs=14.0
Q ss_pred EEEEEecCCCHHhHHHH
Q 008311 349 VLLLISDLDISQEELSI 365 (570)
Q Consensus 349 VlL~FwAsWCpPCr~e~ 365 (570)
-+..|+.+|||.|+.--
T Consensus 9 ~V~ly~~~~Cp~C~~ak 25 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAK 25 (79)
T ss_pred CEEEEECCCCHhHHHHH
Confidence 34569999999999876
No 388
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=31.60 E-value=72 Score=26.30 Aligned_cols=58 Identities=19% Similarity=0.112 Sum_probs=36.0
Q ss_pred EecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhh--hccccccccccccC-CC
Q 008311 512 YGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCG--ESWQPLQLKSLVTS-GK 569 (570)
Q Consensus 512 Yfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~--~~~~~~~~~~~~~~-~~ 569 (570)
++|++ +.+.--|..+++-+..+.|+++|.+.+...+.++... +....=.+|.|+.+ |.
T Consensus 6 ~~~~~~~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~ 67 (84)
T cd03038 6 LAGKDPVRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGELTSGGFYTVPVIVDGSGE 67 (84)
T ss_pred ccCCCCCCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccccCCCCceeCeEEECCCC
Confidence 34555 6555666677777778889999999997543322111 23334467788766 54
No 389
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=30.48 E-value=1.1e+02 Score=24.50 Aligned_cols=54 Identities=24% Similarity=0.205 Sum_probs=36.9
Q ss_pred EEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC---chhhhhhccccccccccccC-CC
Q 008311 511 LYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST---KRDKCGESWQPLQLKSLVTS-GK 569 (570)
Q Consensus 511 lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~---~~e~~~~~~~~~~~~~~~~~-~~ 569 (570)
||+...+ +++ ++.-+..+.|.++|.+.+.-.+ ..+.+++..-.=.+|+|+.+ |.
T Consensus 3 Ly~~~~~-~~~----~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~ 60 (77)
T cd03057 3 LYYSPGA-CSL----APHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGE 60 (77)
T ss_pred EEeCCCC-chH----HHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCc
Confidence 6765543 332 2333446679999999887644 35678887777788999887 64
No 390
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.30 E-value=1.1e+02 Score=35.90 Aligned_cols=21 Identities=19% Similarity=0.064 Sum_probs=18.1
Q ss_pred CCCEEEEEEecCCCHHhHHHH
Q 008311 345 RRKNVLLLISDLDISQEELSI 365 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~ 365 (570)
.+|+|+|.+.++||--|.--.
T Consensus 42 edkPIflSIGys~CHWChVM~ 62 (667)
T COG1331 42 EDKPILLSIGYSTCHWCHVMA 62 (667)
T ss_pred hCCCEEEEeccccccchHHHh
Confidence 689999999999999997543
No 391
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=29.63 E-value=74 Score=31.28 Aligned_cols=40 Identities=10% Similarity=0.004 Sum_probs=31.8
Q ss_pred EEEecCCCchHHHHHHHHHHHHhh-CCCCEEEEEEecCCch
Q 008311 510 FLYGGDDVEWVRKFTTAARSVANT-ARIPLEMVYVGKSTKR 549 (570)
Q Consensus 510 ~lYfgad~~w~r~FT~~l~~vy~~-~~~~fEiv~Vs~d~~~ 549 (570)
+.|.++.||.|+.=.+.+.+.|++ .+.+++++-||.|...
T Consensus 31 f~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~ 71 (203)
T cd03016 31 FSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVE 71 (203)
T ss_pred EEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence 345566699999988999998876 4567899999998754
No 392
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=29.21 E-value=76 Score=27.79 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=37.9
Q ss_pred CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311 517 VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 517 ~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
|+.||+..-.| .+.|+++|++.|.-+++.+.+.+..-.=.+|.|...|.
T Consensus 22 cpf~~rvrl~L----~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~ 70 (91)
T cd03061 22 CPFCQRLFMVL----WLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGE 70 (91)
T ss_pred ChhHHHHHHHH----HHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCE
Confidence 66666554444 45599999999998888888999888888888876653
No 393
>PF09767 DUF2053: Predicted membrane protein (DUF2053); InterPro: IPR019164 This family of proteins is conserved from plants to humans. The function is unknown although some annotation suggests that it is a transmembrane protein.
Probab=28.73 E-value=55 Score=31.73 Aligned_cols=84 Identities=24% Similarity=0.379 Sum_probs=52.7
Q ss_pred hhhhhhhhhhc---cCCcHHHHHHHHHcCCchhhhccCCCCcchhhhHHHHHHHHHHHhhhhhhcccCCc--ccccCCcc
Q 008311 144 YYGEFWLLAQI---YSSNQLAKSMAILKQLPSIMEHTSGPLKSRFDTLNNLIKAMMGVTRCIVEFKDMPS--NYITQDAP 218 (570)
Q Consensus 144 ~YGefw~l~q~---~~~~~lakS~a~lkq~p~~~~~~~~~~k~~~~~~~~Lvk~~~~v~~~i~e~~~l~~--~y~~~d~p 218 (570)
|||.||.+.|- |--.|+.|.+.+=.=+|..- . .-++-+++++|...|++..+-=.=-|.. .-...|.-
T Consensus 27 E~~~~~~~~~~~~~Y~~tql~Kml~lATf~P~~~-~------~~~~~~~eilk~~~d~~Dl~gi~~il~~~~~~~~~~~r 99 (159)
T PF09767_consen 27 EYGAFWKCLQAGIGYILTQLCKMLLLATFFPSSD-S------STFDFIQEILKSSVDLIDLIGIYLILSSKANAGKGESR 99 (159)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-c------ccchHHHHHHHHHHHHHHHHHHHHHHhCcccCCCccee
Confidence 67888888874 56678999988777888722 1 2467889999999998876543322222 11122222
Q ss_pred cHHHHhhhchhHHHHHHHHHHHH
Q 008311 219 EFSSAMAHIPIAVYWTIRSVVAC 241 (570)
Q Consensus 219 ~l~~a~~~ip~~vYW~I~s~vac 241 (570)
. .-+++-|++...+.-
T Consensus 100 i-------l~~glGWa~ae~l~t 115 (159)
T PF09767_consen 100 I-------LAIGLGWAFAESLLT 115 (159)
T ss_pred E-------EEEeeeeehHHHHHH
Confidence 2 224567777776653
No 394
>PLN02378 glutathione S-transferase DHAR1
Probab=28.72 E-value=59 Score=31.88 Aligned_cols=49 Identities=8% Similarity=0.026 Sum_probs=39.8
Q ss_pred CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311 517 VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 517 ~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
|++|+...-.|.+ .|.++|++.|.-.+..+.+.+..-.=.+|+|..+|.
T Consensus 20 ~p~~~rv~~~L~e----~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~ 68 (213)
T PLN02378 20 CPFSQRALLTLEE----KSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDK 68 (213)
T ss_pred CcchHHHHHHHHH----cCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCE
Confidence 8999887766644 499999999987777778888877778999988774
No 395
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=28.29 E-value=1.1e+02 Score=24.41 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=26.5
Q ss_pred CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311 517 VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 517 ~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
|++|+ ++....+..|++||++.+..+. ....-.+|.|..+|+
T Consensus 16 sp~~~----~v~~~L~~~~i~~~~~~~~~~~-------~~p~g~vP~l~~~g~ 57 (72)
T cd03054 16 SPECL----KVETYLRMAGIPYEVVFSSNPW-------RSPTGKLPFLELNGE 57 (72)
T ss_pred CHHHH----HHHHHHHhCCCceEEEecCCcc-------cCCCcccCEEEECCE
Confidence 55554 4444556679999999987543 112335777777664
No 396
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=27.62 E-value=66 Score=25.74 Aligned_cols=16 Identities=6% Similarity=-0.101 Sum_probs=13.2
Q ss_pred EEEEecCCCHHhHHHH
Q 008311 350 LLLISDLDISQEELSI 365 (570)
Q Consensus 350 lL~FwAsWCpPCr~e~ 365 (570)
+..|+.+|||.|..-.
T Consensus 3 v~lys~~~Cp~C~~ak 18 (72)
T cd03029 3 VSLFTKPGCPFCARAK 18 (72)
T ss_pred EEEEECCCCHHHHHHH
Confidence 3458999999999875
No 397
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=27.48 E-value=39 Score=35.04 Aligned_cols=29 Identities=10% Similarity=-0.092 Sum_probs=24.0
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHH
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNES 373 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~el 373 (570)
.||+.++++++-|||-|-.+- |--.-.++
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf 87 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRF 87 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhc
Confidence 599999999999999999988 55544444
No 398
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.39 E-value=1.2e+02 Score=29.31 Aligned_cols=60 Identities=2% Similarity=0.014 Sum_probs=44.1
Q ss_pred CCeEEEEEecCC-CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccc
Q 008311 505 EGKYIFLYGGDD-VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLV 565 (570)
Q Consensus 505 egk~I~lYfgad-~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~ 565 (570)
.+.-|.+=|-|. |.|||..+|.|.++..+....|-++-|.-|..-+-..+ +++-+.|+++
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~-Y~I~avPtvl 120 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAED-YEISAVPTVL 120 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhh-cceeeeeEEE
Confidence 445555667677 99999999999999988777888888887776554433 4566666654
No 399
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=27.17 E-value=78 Score=28.11 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=36.4
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhccccccc
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPLQL 561 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~ 561 (570)
|-+|+-..|..||+ +.+.-++.|++|+.+-+-++. +.+++++.++..++
T Consensus 1 i~iy~~~~C~~crk----a~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~g~ 50 (105)
T cd03035 1 ITLYGIKNCDTVKK----ARKWLEARGVAYTFHDYRKDGLDAATLERWLAKVGW 50 (105)
T ss_pred CEEEeCCCCHHHHH----HHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHhCh
Confidence 45899889999975 555556779999999887776 55577777665553
No 400
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=26.96 E-value=95 Score=27.85 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=38.4
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhccccccccc
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQPLQLKS 563 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~~~~~~ 563 (570)
|-|||..+|.-||+ +.+.-++.|+.+|.+=+-++. +++++++.++-.+++.
T Consensus 1 i~iy~~~~C~t~rk----A~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~g~~~ 52 (114)
T TIGR00014 1 VTIYHNPRCSKSRN----TLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKLGLTV 52 (114)
T ss_pred CEEEECCCCHHHHH----HHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHcCCch
Confidence 45899999999975 555556779999988666655 5668888888777643
No 401
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=26.06 E-value=88 Score=30.74 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=30.9
Q ss_pred cCCCccccccccCCe-EEEEEecCCCchHHHHHHHH---HHHHhh--CCCCEEEEEEe
Q 008311 493 DGIDPLVLDWIKEGK-YIFLYGGDDVEWVRKFTTAA---RSVANT--ARIPLEMVYVG 544 (570)
Q Consensus 493 d~~d~~i~~~~~egk-~I~lYfgad~~w~r~FT~~l---~~vy~~--~~~~fEiv~Vs 544 (570)
+|.|+.....-..|+ .|--||+=.||.|+.|-+.+ ..+.+. .+..|+.+++.
T Consensus 24 ~G~~Y~~~~~p~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 81 (207)
T PRK10954 24 DGKQYTTLDKPVAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHVE 81 (207)
T ss_pred CCceeEEecCcCCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEeccc
Confidence 355555432222333 36666666699999999865 555554 35566666653
No 402
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=26.02 E-value=90 Score=25.07 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=32.8
Q ss_pred CchHHHHHHHHHHHHhhCCCCEEEEEEec----CCchhhhhhcccccccccccc-CCC
Q 008311 517 VEWVRKFTTAARSVANTARIPLEMVYVGK----STKRDKCGESWQPLQLKSLVT-SGK 569 (570)
Q Consensus 517 ~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~----d~~~e~~~~~~~~~~~~~~~~-~~~ 569 (570)
|||+++=--.| +..|.++|+..|.. .++.+.+.+....-.+|.|+. +|+
T Consensus 2 sP~a~Rv~i~l----~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~ 55 (70)
T PF13409_consen 2 SPFAHRVRIAL----EEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGT 55 (70)
T ss_dssp -HHHHHHHHHH----HHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTE
T ss_pred chHhHHHHHHH----HHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCC
Confidence 66765544444 44599999999832 334478899888889999987 553
No 403
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=25.70 E-value=92 Score=30.63 Aligned_cols=30 Identities=3% Similarity=-0.087 Sum_probs=23.7
Q ss_pred cCCCEEEEEEecCCCHHhHHHH--H---HHHHHHH
Q 008311 344 LRRKNVLLLISDLDISQEELSI--L---EQIYNES 373 (570)
Q Consensus 344 LkGKvVlL~FwAsWCpPCr~e~--L---~~iY~el 373 (570)
..||+.++.|..--||.|..+- | ..+.+.+
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~ 69 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKL 69 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhC
Confidence 4678889999999999999986 4 5555555
No 404
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=25.56 E-value=1.4e+02 Score=34.03 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=41.3
Q ss_pred cCCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeeccc
Q 008311 344 LRRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVYHP 421 (570)
Q Consensus 344 LkGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~fP 421 (570)
+.+++.+-.|-.++||.|..-. ++++-.+. .+++.-.|-. .. |
T Consensus 474 ~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~--------~~i~~~~i~~------------~~--------------~- 518 (555)
T TIGR03143 474 ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN--------PNVEAEMIDV------------SH--------------F- 518 (555)
T ss_pred cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC--------CCceEEEEEC------------cc--------------c-
Confidence 4566667778999999999644 44443332 2455555432 00 1
Q ss_pred cccChHHHHHHHHhCCCCCCceEEEECCCCcEEc
Q 008311 422 TLIDRAVIRYVKDVWHFKNKPILVVLDPQGRVVS 455 (570)
Q Consensus 422 ~l~D~~~~~~L~~~y~V~~IPtlVVLDpqGkVv~ 455 (570)
..+.++|+|.+.|++|+ +|+++.
T Consensus 519 --------~~~~~~~~v~~vP~~~i---~~~~~~ 541 (555)
T TIGR03143 519 --------PDLKDEYGIMSVPAIVV---DDQQVY 541 (555)
T ss_pred --------HHHHHhCCceecCEEEE---CCEEEE
Confidence 13567799999999887 455543
No 405
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=25.41 E-value=1.2e+02 Score=28.05 Aligned_cols=47 Identities=17% Similarity=0.146 Sum_probs=36.1
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhccccc
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPL 559 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~ 559 (570)
|-||+...|+.|++ +.+.-++.|+.||.+-+.++.+ .+++++.++-.
T Consensus 2 i~iY~~~~C~~C~k----a~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 2 VTLFTSPSCTSCRK----AKAWLEEHDIPFTERNIFSSPLTIDEIKQILRMT 49 (131)
T ss_pred EEEEeCCCChHHHH----HHHHHHHcCCCcEEeeccCChhhHHHHHHHHHHh
Confidence 56999999999976 5555567799999999987764 46777776655
No 406
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.18 E-value=74 Score=29.06 Aligned_cols=72 Identities=14% Similarity=0.296 Sum_probs=52.2
Q ss_pred ChhhHHHHHHHHcCCCceeeccccccChHH---HHHHHHhCCCCCCceEEEECCCCcEEccccchhHhhhcCCCCCCCch
Q 008311 399 DDPTQKKFETLQSSMPWYTVYHPTLIDRAV---IRYVKDVWHFKNKPILVVLDPQGRVVSPNALHMMWIWGSNAFPFTSL 475 (570)
Q Consensus 399 ~D~~~~~F~~~~~~MPW~aV~fP~l~D~~~---~~~L~~~y~V~~IPtlVVLDpqGkVv~~na~~~I~~~G~~aFPFt~~ 475 (570)
.|++.+.........+-.+|.||.+.|--+ -+.|+++||++|- |=.-|.|+-.....|.. -|-++|-.+..
T Consensus 6 ~d~~~~~l~~~L~~l~lI~i~FP~F~DGRgfS~ArlLR~r~gy~Ge-----lRA~Gdvl~DQl~~l~R-~GFdsf~l~~~ 79 (110)
T PF06073_consen 6 PDDDPEELADDLDRLPLIAIDFPKFTDGRGFSQARLLRERYGYTGE-----LRAVGDVLRDQLFYLRR-CGFDSFELRED 79 (110)
T ss_pred CCCCHHHHHhhccCCCEEEEECCCcCCchHhHHHHHHHHHcCCCCc-----EEEeccchHHHHHHHHH-cCCCEEEeCCC
Confidence 355666676667888989999999888532 3467789999987 55678888776666554 58888877653
Q ss_pred h
Q 008311 476 R 476 (570)
Q Consensus 476 ~ 476 (570)
.
T Consensus 80 ~ 80 (110)
T PF06073_consen 80 Q 80 (110)
T ss_pred C
Confidence 3
No 407
>PRK12559 transcriptional regulator Spx; Provisional
Probab=25.03 E-value=1.5e+02 Score=27.43 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=36.0
Q ss_pred EEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCC-chhhhhhcccc
Q 008311 509 IFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKST-KRDKCGESWQP 558 (570)
Q Consensus 509 I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~-~~e~~~~~~~~ 558 (570)
|-||+...|+.||+ +.+.-++.|++|+.+-+.++. +.+++++.++-
T Consensus 2 i~iY~~~~C~~crk----A~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 2 VVLYTTASCASCRK----AKAWLEENQIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred EEEEeCCCChHHHH----HHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 66999999999976 555556779999999888776 45577777765
No 408
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=24.88 E-value=2.6e+02 Score=26.50 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=31.9
Q ss_pred CCCEEEEEEecCCCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEe
Q 008311 345 RRKNVLLLISDLDISQEELSI--LEQIYNESRLHLTRQESHYEVVWIP 390 (570)
Q Consensus 345 kGKvVlL~FwAsWCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~Is 390 (570)
..|+|++-|.-.|=|.|...- |.++-+.++ +|.+|++-
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs--------nfa~Iylv 61 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVS--------NFAVIYLV 61 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHh--------hceEEEEE
Confidence 458999999999999998865 999998885 47777774
No 409
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=24.22 E-value=54 Score=31.89 Aligned_cols=63 Identities=22% Similarity=0.130 Sum_probs=32.1
Q ss_pred cCCeEEEEEecCC-CchHHHHHHH---HHHHHhhCCCCEEEEEEecCCchhhhhhcc-------cccccccccc
Q 008311 504 KEGKYIFLYGGDD-VEWVRKFTTA---ARSVANTARIPLEMVYVGKSTKRDKCGESW-------QPLQLKSLVT 566 (570)
Q Consensus 504 ~egk~I~lYfgad-~~w~r~FT~~---l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~-------~~~~~~~~~~ 566 (570)
.++|-|+|..|.+ |.||+..... =.+++.-.+.+|=-|-|..+...+--+.++ +.-++|+-++
T Consensus 35 ~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vf 108 (163)
T PF03190_consen 35 KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVF 108 (163)
T ss_dssp HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEE
T ss_pred hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEE
Confidence 6899999999999 9999876541 112222234577777777665444333332 4556776554
No 410
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=23.68 E-value=93 Score=27.83 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=34.7
Q ss_pred EEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCc-hhhhhhcccccc
Q 008311 510 FLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTK-RDKCGESWQPLQ 560 (570)
Q Consensus 510 ~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~-~e~~~~~~~~~~ 560 (570)
-||+...|+.||+ +.+.-++.|+.|+.+-+.++.. .+++.+.++-.+
T Consensus 2 ~iY~~~~C~~c~k----a~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 2 KVYGSPNCTTCKK----ARRWLEANGIEYQFIDIGEDGPTREELLDILSLLE 49 (117)
T ss_pred EEEeCCCCHHHHH----HHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcC
Confidence 4899999999965 5555566799999998877653 556776666555
No 411
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=23.32 E-value=96 Score=31.67 Aligned_cols=49 Identities=6% Similarity=-0.016 Sum_probs=40.4
Q ss_pred CchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccccccccccccCCC
Q 008311 517 VEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQPLQLKSLVTSGK 569 (570)
Q Consensus 517 ~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~~~~~~~~~~~~~ 569 (570)
|+.||.-.-.|.+ .|++||++.|.-.+..+.+.+..-.=.+|.|+.+|.
T Consensus 19 cp~~~rv~i~L~e----kgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~ 67 (236)
T TIGR00862 19 CPFSQRLFMILWL----KGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTE 67 (236)
T ss_pred CHhHHHHHHHHHH----cCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCE
Confidence 7888877766654 599999999998887788998888778999987765
No 412
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=23.25 E-value=1e+02 Score=28.95 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=31.5
Q ss_pred cCCeEEEEEe--cCCCchHHHH-HHHHHHHHhh-CCCCE-EEEEEecCCchh
Q 008311 504 KEGKYIFLYG--GDDVEWVRKF-TTAARSVANT-ARIPL-EMVYVGKSTKRD 550 (570)
Q Consensus 504 ~egk~I~lYf--gad~~w~r~F-T~~l~~vy~~-~~~~f-Eiv~Vs~d~~~e 550 (570)
..||.+-||| ++.|+-|..= .+.+.+.+.+ ..... +++-||.|.+..
T Consensus 27 ~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~ 78 (155)
T cd03013 27 FKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFV 78 (155)
T ss_pred hCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHH
Confidence 3565544444 8888888764 6666666654 34456 589999988765
No 413
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=22.89 E-value=3.4e+02 Score=29.36 Aligned_cols=53 Identities=11% Similarity=0.086 Sum_probs=30.7
Q ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHhhCCCCEEEEEEecCCchhhhhhccc
Q 008311 505 EGKYIFLYGGDDVEWVRKFTTAARSVANTARIPLEMVYVGKSTKRDKCGESWQ 557 (570)
Q Consensus 505 egk~I~lYfgad~~w~r~FT~~l~~vy~~~~~~fEiv~Vs~d~~~e~~~~~~~ 557 (570)
+++.|+|.+|.-..=++...|.+.++++........+.+...++.+.+++.++
T Consensus 166 ~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~~~~i~~~~~ 218 (347)
T PRK14089 166 KEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFKGKDLKEIYG 218 (347)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCcHHHHHHHHh
Confidence 45899999998854455666755555543211223444444444566666543
No 414
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=21.49 E-value=1.8e+02 Score=26.69 Aligned_cols=62 Identities=21% Similarity=0.176 Sum_probs=42.8
Q ss_pred ccCCeEEEEEecCCCchHH---HHHHHHHHHHhhCCCCEEEEEEecCC----chhhhhhccccc--cccccc
Q 008311 503 IKEGKYIFLYGGDDVEWVR---KFTTAARSVANTARIPLEMVYVGKST----KRDKCGESWQPL--QLKSLV 565 (570)
Q Consensus 503 ~~egk~I~lYfgad~~w~r---~FT~~l~~vy~~~~~~fEiv~Vs~d~----~~e~~~~~~~~~--~~~~~~ 565 (570)
+.+.+++.+=|-+-.|||. .|...+.+.+++++ .+-+--|+.++ .+..+.+-+++- +.|||.
T Consensus 15 v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~ 85 (116)
T cd03007 15 IPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-DLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIY 85 (116)
T ss_pred HhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-ceEEEEEecccccchhhHHHHHHhCCCcCCCCEEE
Confidence 4577888888878779999 77776666655543 46677777754 334566666666 788773
No 415
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=21.44 E-value=1.7e+02 Score=27.43 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=32.6
Q ss_pred EEEEEecCCCchHHHHHHHHHHHHhhC-CCCEEEEEEecCCc
Q 008311 508 YIFLYGGDDVEWVRKFTTAARSVANTA-RIPLEMVYVGKSTK 548 (570)
Q Consensus 508 ~I~lYfgad~~w~r~FT~~l~~vy~~~-~~~fEiv~Vs~d~~ 548 (570)
.|-+||.-.||||--+.+.|.++.+.. +..++...++-...
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 366788888999999999999998765 77787777765443
No 416
>smart00188 IL10 Interleukin-10 family. Interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells.
Probab=21.09 E-value=1.4e+02 Score=28.36 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=32.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhhhcchhhHHHHHHH
Q 008311 263 WELSTLAHKLKNIHESLKKLMATCYRHIEEKKSHEAYQMLVKLFDSIHIDNMKVLKAL 320 (570)
Q Consensus 263 ~els~~~~kl~~i~~~L~~~l~~c~~~i~~~~~~e~Y~~l~~lf~~~~~D~~~~Lk~L 320 (570)
-.+|++++++ ..||++|..|+.+..=....+.+..+++.|.+- +.-.+.||+
T Consensus 71 ~~i~Sl~~~f----~~lk~~l~~C~~~~~Ce~~~~a~~qi~~~f~kl--~~kG~~KAm 122 (137)
T smart00188 71 EHVNSLGEKL----KTLRLRLRRCHRFLPCENKSKAVEQVKNAFNKL--QEKGVYKAM 122 (137)
T ss_pred hhHHHHHHHH----HHHHHHHHHCccccCccchhHHHHHHHHHHHHH--HHhHHHHHH
Confidence 3455655554 456777778876655444577788888888874 344444443
No 417
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=20.89 E-value=3.4e+02 Score=26.00 Aligned_cols=62 Identities=8% Similarity=0.094 Sum_probs=40.6
Q ss_pred cccccccCCeEEEEEecCC-C-chHHHHHHHHHHHHhh---CCCCEEEEEEecCC---chhhhhhccccc
Q 008311 498 LVLDWIKEGKYIFLYGGDD-V-EWVRKFTTAARSVANT---ARIPLEMVYVGKST---KRDKCGESWQPL 559 (570)
Q Consensus 498 ~i~~~~~egk~I~lYfgad-~-~w~r~FT~~l~~vy~~---~~~~fEiv~Vs~d~---~~e~~~~~~~~~ 559 (570)
.+......||..-+|||=- | +-|-.-+..+.++.+. .+.++++++||-|- .-+..+++.+..
T Consensus 44 ~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~~ 113 (174)
T PF02630_consen 44 TVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKKF 113 (174)
T ss_dssp EEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHCH
T ss_pred EecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHhc
Confidence 3444557899999999655 5 4455555566666542 47899999999874 345666666544
No 418
>PRK10824 glutaredoxin-4; Provisional
Probab=20.75 E-value=1.9e+02 Score=26.40 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred EEEEecC-----CCHHhHHHH--HHHHHHHHhhhhhccCCCeEEEEEecccCCCCCChhhHHHHHHHHcCCCceeec
Q 008311 350 LLLISDL-----DISQEELSI--LEQIYNESRLHLTRQESHYEVVWIPIVDHFIHWDDPTQKKFETLQSSMPWYTVY 419 (570)
Q Consensus 350 lL~FwAs-----WCpPCr~e~--L~~iY~elk~~~~k~~~~fEIV~IsIvD~s~~w~D~~~~~F~~~~~~MPW~aV~ 419 (570)
++.|+.+ |||.|+.-. |.+. +.+|+++-| +.+.+..+.+..--.|..||
T Consensus 17 Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-----------~i~~~~idi----------~~d~~~~~~l~~~sg~~TVP 72 (115)
T PRK10824 17 ILLYMKGSPKLPSCGFSAQAVQALSAC-----------GERFAYVDI----------LQNPDIRAELPKYANWPTFP 72 (115)
T ss_pred EEEEECCCCCCCCCchHHHHHHHHHHc-----------CCCceEEEe----------cCCHHHHHHHHHHhCCCCCC
No 419
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=20.60 E-value=2.7e+02 Score=27.79 Aligned_cols=59 Identities=8% Similarity=-0.054 Sum_probs=37.4
Q ss_pred ccccccCCeEEEEEec-CC----CchHHHHHHHHHHHHh-hCCCCEEEEEEecCC---chhhhhhccc
Q 008311 499 VLDWIKEGKYIFLYGG-DD----VEWVRKFTTAARSVAN-TARIPLEMVYVGKST---KRDKCGESWQ 557 (570)
Q Consensus 499 i~~~~~egk~I~lYfg-ad----~~w~r~FT~~l~~vy~-~~~~~fEiv~Vs~d~---~~e~~~~~~~ 557 (570)
+..+-++||..-+||| .+ ||+.-.-..++.+.-. ..+.++.+++||-|- ..+..++|..
T Consensus 60 ~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 60 FTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred eeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 3344579999999998 55 5554432222222223 568999999999865 3446666655
No 420
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.49 E-value=2e+02 Score=28.22 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=45.7
Q ss_pred ccCCeEEEEEecCC-CchHHHHHHHHHHHHh--h-CCCCEEEEEEecCC---------------chhhhhhccccccccc
Q 008311 503 IKEGKYIFLYGGDD-VEWVRKFTTAARSVAN--T-ARIPLEMVYVGKST---------------KRDKCGESWQPLQLKS 563 (570)
Q Consensus 503 ~~egk~I~lYfgad-~~w~r~FT~~l~~vy~--~-~~~~fEiv~Vs~d~---------------~~e~~~~~~~~~~~~~ 563 (570)
..+|||..+-|+.. |+.|-.|-..+....+ + ....|-+|++--.. +.++.-+.+.+=+-|+
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPt 118 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPT 118 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCce
Confidence 35899999988877 9999999876655432 2 34567666664322 2334456677788888
Q ss_pred cccCCCC
Q 008311 564 LVTSGKT 570 (570)
Q Consensus 564 ~~~~~~~ 570 (570)
+++.-||
T Consensus 119 fvFfdk~ 125 (182)
T COG2143 119 FVFFDKT 125 (182)
T ss_pred EEEEcCC
Confidence 8876543
Done!