BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008312
(570 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 158/497 (31%), Positives = 233/497 (46%), Gaps = 99/497 (19%)
Query: 68 IDLPDTDPRVQRTVEGFE-PEQISVSLSSAHD-SVWISWITGEFQIGNNLKPLDPKSVVS 125
+D+P D V G+ P+Q+ ++ V ISW T P D K+ +
Sbjct: 7 VDMP-WDSDVFAVPSGYNAPQQVHITQGDYEGRGVIISWTT----------PYD-KAGAN 54
Query: 126 VVRYGTRRSQLNRKATGRSLVYSQLYPFLGLQNYTSGIIHHVRLTGLKPDTLYHYQCGDP 185
V Y + S+ ++A G + Y NYTS IHH + L+ DT Y+Y+ G
Sbjct: 55 KVFYWSENSKSQKRAMGTVVTYKYY-------NYTSAFIHHCTIKDLEYDTKYYYRLG-- 105
Query: 186 SIPAMSGTYCFRTMPDSSSTSYPSRIAIVGDVGLTYNTTSTVSHMISN--RPDLILLVGD 243
+ F T P P ++GD+G T+++ +T++H N + +L +GD
Sbjct: 106 -FGDAKRQFWFVT-PPKPGPDVPYVFGLIGDIGQTHDSNTTLTHYEQNSAKGQAVLFMGD 163
Query: 244 VTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE 303
++Y+N + P H+ RWD WGR+ + ++ P + GNHE +
Sbjct: 164 LSYSNRW-----------------PNHD--NNRWDTWGRFSERSVAYQPWIWTAGNHEID 204
Query: 304 ---EQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKW 360
+ E + FV +T+R+ P + SGS +Y+ H ++L++Y F K QYKW
Sbjct: 205 YAPDIGEYQPFVPFTNRYPTPHEASGSGDPLWYAIKRASAHIIVLSSYSGFVKYSPQYKW 264
Query: 361 LEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQV 420
+L V R TPWL+ HAP Y++Y+AHY E E MR E Y VD+VF+GH V
Sbjct: 265 FTSELEKVNRSETPWLIVLVHAPLYNSYEAHYMEGEAMRAIFEPYFVYYKVDIVFSGH-V 323
Query: 421 HAYERSNRVYNYTL-----------DPCGPVHITVGDGGNREKMAVPHADEPGNCPEPST 469
H+YERS RV N D PV+IT+GDGGN E +A T
Sbjct: 324 HSYERSERVSNVAYNIVNAKCTPVSDESAPVYITIGDGGNSEGLA-----------SEMT 372
Query: 470 TPDKILGGGKFCGFNFTSGPASGKFCWDRQPDYSAFRESSFGHGILEVKNETHALWTWHR 529
P QP YSAFRE+SFGHGI ++KN THA ++WHR
Sbjct: 373 QP---------------------------QPSYSAFREASFGHGIFDIKNRTHAHFSWHR 405
Query: 530 NQDFYEAAGDQIYIVRQ 546
NQD D ++++ +
Sbjct: 406 NQDGASVEADSLWLLNR 422
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 225 bits (574), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 155/496 (31%), Positives = 236/496 (47%), Gaps = 100/496 (20%)
Query: 69 DLPDTDPRVQRTVEGFE-PEQISVSLSS-AHDSVWISWITGEFQIGNNLKPLDPKSVVSV 126
D+P D V R G+ P+Q+ ++ ++ ISW+T + +P S S
Sbjct: 4 DMP-LDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMD----------EPGS--SA 50
Query: 127 VRYGTRRSQLNRKATGRSLVYSQLYPFLGLQNYTSGIIHHVRLTGLKPDTLYHYQCGDPS 186
VRY + ++ R A G+ Y NY+SG IHH + LK +T Y+Y+ G
Sbjct: 51 VRYWSEKNGRKRIAKGKMSTYRFF-------NYSSGFIHHTTIRKLKYNTKYYYEVG--- 100
Query: 187 IPAMSGTYCFRTMPDSSSTSYPSRIAIVGDVGLTYNTTSTVSH--MISNRPDLILLVGDV 244
+ + + F T P + P ++GD+G ++++ +T+SH + + +L VGD+
Sbjct: 101 LRNTTRRFSFIT-PPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDL 159
Query: 245 TYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE- 303
+YA+ Y P H+ RWD WGR+ + ++ P + GNHE E
Sbjct: 160 SYADRY-----------------PNHDNV--RWDTWGRFTERSVAYQPWIWTAGNHEIEF 200
Query: 304 --EQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWL 361
E E F ++ R+ P + S S S F+YS H ++L++Y ++ + QY WL
Sbjct: 201 APEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWL 260
Query: 362 EEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVH 421
+++L V+R TPWL+ H+P Y++Y H+ E E MR E KY VDVVF GH VH
Sbjct: 261 KKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGH-VH 319
Query: 422 AYERSNRVYNYTL-----------DPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTT 470
AYERS RV N D PV+IT+GD GN + N +P
Sbjct: 320 AYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGN-------YGVIDSNMIQP--- 369
Query: 471 PDKILGGGKFCGFNFTSGPASGKFCWDRQPDYSAFRESSFGHGILEVKNETHALWTWHRN 530
QP+YSAFRE+SFGHG+ ++KN THA ++W+RN
Sbjct: 370 ----------------------------QPEYSAFREASFGHGMFDIKNRTHAHFSWNRN 401
Query: 531 QDFYEAAGDQIYIVRQ 546
QD D ++ +
Sbjct: 402 QDGVAVEADSVWFFNR 417
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 225 bits (573), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 155/496 (31%), Positives = 236/496 (47%), Gaps = 100/496 (20%)
Query: 69 DLPDTDPRVQRTVEGFE-PEQISVSLSS-AHDSVWISWITGEFQIGNNLKPLDPKSVVSV 126
D+P D V R G+ P+Q+ ++ ++ ISW+T + +P S S
Sbjct: 10 DMP-LDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMD----------EPGS--SA 56
Query: 127 VRYGTRRSQLNRKATGRSLVYSQLYPFLGLQNYTSGIIHHVRLTGLKPDTLYHYQCGDPS 186
VRY + ++ R A G+ Y NY+SG IHH + LK +T Y+Y+ G
Sbjct: 57 VRYWSEKNGRKRIAKGKMSTYRFF-------NYSSGFIHHTTIRKLKYNTKYYYEVG--- 106
Query: 187 IPAMSGTYCFRTMPDSSSTSYPSRIAIVGDVGLTYNTTSTVSH--MISNRPDLILLVGDV 244
+ + + F T P + P ++GD+G ++++ +T+SH + + +L VGD+
Sbjct: 107 LRNTTRRFSFIT-PPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDL 165
Query: 245 TYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE- 303
+YA+ Y P H+ RWD WGR+ + ++ P + GNHE E
Sbjct: 166 SYADRY-----------------PNHDNV--RWDTWGRFTERSVAYQPWIWTAGNHEIEF 206
Query: 304 --EQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWL 361
E E F ++ R+ P + S S S F+YS H ++L++Y ++ + QY WL
Sbjct: 207 APEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWL 266
Query: 362 EEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVH 421
+++L V+R TPWL+ H+P Y++Y H+ E E MR E KY VDVVF GH VH
Sbjct: 267 KKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGH-VH 325
Query: 422 AYERSNRVYNYTL-----------DPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTT 470
AYERS RV N D PV+IT+GD GN + N +P
Sbjct: 326 AYERSERVSNIAYKITDGLCTPVKDQSAPVYITIGDAGN-------YGVIDSNMIQP--- 375
Query: 471 PDKILGGGKFCGFNFTSGPASGKFCWDRQPDYSAFRESSFGHGILEVKNETHALWTWHRN 530
QP+YSAFRE+SFGHG+ ++KN THA ++W+RN
Sbjct: 376 ----------------------------QPEYSAFREASFGHGMFDIKNRTHAHFSWNRN 407
Query: 531 QDFYEAAGDQIYIVRQ 546
QD D ++ +
Sbjct: 408 QDGVAVEADSVWFFNR 423
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 225 bits (573), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 155/496 (31%), Positives = 236/496 (47%), Gaps = 100/496 (20%)
Query: 69 DLPDTDPRVQRTVEGFE-PEQISVSLSS-AHDSVWISWITGEFQIGNNLKPLDPKSVVSV 126
D+P D V R G+ P+Q+ ++ ++ ISW+T + +P S S
Sbjct: 2 DMP-LDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMD----------EPGS--SA 48
Query: 127 VRYGTRRSQLNRKATGRSLVYSQLYPFLGLQNYTSGIIHHVRLTGLKPDTLYHYQCGDPS 186
VRY + ++ R A G+ Y NY+SG IHH + LK +T Y+Y+ G
Sbjct: 49 VRYWSEKNGRKRIAKGKMSTYRFF-------NYSSGFIHHTTIRKLKYNTKYYYEVG--- 98
Query: 187 IPAMSGTYCFRTMPDSSSTSYPSRIAIVGDVGLTYNTTSTVSH--MISNRPDLILLVGDV 244
+ + + F T P + P ++GD+G ++++ +T+SH + + +L VGD+
Sbjct: 99 LRNTTRRFSFIT-PPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDL 157
Query: 245 TYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE- 303
+YA+ Y P H+ RWD WGR+ + ++ P + GNHE E
Sbjct: 158 SYADRY-----------------PNHDNV--RWDTWGRFTERSVAYQPWIWTAGNHEIEF 198
Query: 304 --EQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWL 361
E E F ++ R+ P + S S S F+YS H ++L++Y ++ + QY WL
Sbjct: 199 APEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWL 258
Query: 362 EEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVH 421
+++L V+R TPWL+ H+P Y++Y H+ E E MR E KY VDVVF GH VH
Sbjct: 259 KKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGH-VH 317
Query: 422 AYERSNRVYNYTL-----------DPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTT 470
AYERS RV N D PV+IT+GD GN + N +P
Sbjct: 318 AYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGN-------YGVIDSNMIQP--- 367
Query: 471 PDKILGGGKFCGFNFTSGPASGKFCWDRQPDYSAFRESSFGHGILEVKNETHALWTWHRN 530
QP+YSAFRE+SFGHG+ ++KN THA ++W+RN
Sbjct: 368 ----------------------------QPEYSAFREASFGHGMFDIKNRTHAHFSWNRN 399
Query: 531 QDFYEAAGDQIYIVRQ 546
QD D ++ +
Sbjct: 400 QDGVAVEADSVWFFNR 415
>pdb|3P01|A Chain A, Crystal Structure Of Two-Component Response Regulator From
Nostoc Sp. Pcc 7120
pdb|3P01|B Chain B, Crystal Structure Of Two-Component Response Regulator From
Nostoc Sp. Pcc 7120
pdb|3P01|C Chain C, Crystal Structure Of Two-Component Response Regulator From
Nostoc Sp. Pcc 7120
Length = 184
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 47 TLDGPFKPVTIPLDESFRGNAIDLPDTDPRVQRTVEGFEPEQISVSLSSAHDSVWISWI- 105
+L+ P+ ESF NA L + + T++GF +Q +V+ D + I
Sbjct: 44 SLEAILTPIATAFAESFAVNACILQXLEGQTLSTIQGFYSQQGTVNNWLNQDPLTNEAIA 103
Query: 106 TGEFQIGNNLKPLDPKSVVSVVRY 129
TG+ Q+ N+ DPK + S+ +Y
Sbjct: 104 TGQIQVAANIAK-DPK-LASISQY 125
>pdb|4GEK|A Chain A, Crystal Structure Of Wild-Type Cmoa From E.Coli
pdb|4GEK|G Chain G, Crystal Structure Of Wild-Type Cmoa From E.Coli
Length = 261
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 258 DCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVA--YT 315
+C + NSP + R++ + P+ V+EG+ + EN + V +T
Sbjct: 96 NCKIIAIDNSP------AMIERCRRHIDAYKAPTPVDVIEGDIR-DIAIENASMVVLNFT 148
Query: 316 SRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKS 354
+F PS+ L K Y N GG L+L+ SF+ +
Sbjct: 149 LQFLEPSERQALLDKIYQGLNPGGA--LVLSEKFSFEDA 185
>pdb|2YEQ|A Chain A, Structure Of Phod
pdb|2YEQ|B Chain B, Structure Of Phod
Length = 527
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 19/177 (10%)
Query: 166 HVRLTGLKPDTLYHYQCGDPSIPAMSGTYCFRTMPDSSSTSYPSRIAIVGDVGLTYNTTS 225
HV GL+P+ +Y+Y+ + +S +T+P + A + +
Sbjct: 76 HVEADGLEPNKVYYYRF--KTGHELSPVGKTKTLPAPGANVPQMTFAFASCQQYEHGYYT 133
Query: 226 TVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQ--PRWDYWGRY 283
HM + DL+ +GD Y G + Y N H + + DY R+
Sbjct: 134 AYKHMAKEKLDLVFHLGDYIYE-------YGPNEYVSKTGNVRTHNSAEIITLQDYRNRH 186
Query: 284 MQ--------PVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFY 332
Q + P +V +HE E N+ S AF + + + +Y
Sbjct: 187 AQYRSDANLKAAHAAFPWVVTWDDHEVENNYANKIPEKGQSVEAFVLRRAAAYQAYY 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,763,219
Number of Sequences: 62578
Number of extensions: 848463
Number of successful extensions: 1500
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1468
Number of HSP's gapped (non-prelim): 11
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)