Query 008312
Match_columns 570
No_of_seqs 501 out of 2615
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 22:13:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1378 Purple acid phosphatas 100.0 7.2E-86 1.6E-90 687.6 40.1 420 44-552 8-444 (452)
2 PLN02533 probable purple acid 100.0 1E-80 2.3E-85 668.6 48.4 378 81-547 39-420 (427)
3 cd00839 MPP_PAPs purple acid p 100.0 1.6E-47 3.6E-52 393.8 30.1 276 207-545 3-294 (294)
4 PTZ00422 glideosome-associated 100.0 4.7E-33 1E-37 291.3 28.6 256 208-548 26-332 (394)
5 cd07378 MPP_ACP5 Homo sapiens 100.0 3.4E-31 7.4E-36 270.4 25.2 243 209-529 1-274 (277)
6 cd07395 MPP_CSTP1 Homo sapiens 100.0 1.1E-26 2.4E-31 235.5 23.8 205 207-449 3-236 (262)
7 PF09423 PhoD: PhoD-like phosp 99.9 8.1E-26 1.8E-30 246.6 29.5 315 94-427 5-381 (453)
8 COG3540 PhoD Phosphodiesterase 99.9 3.9E-24 8.3E-29 222.7 19.6 308 94-424 45-419 (522)
9 KOG2679 Purple (tartrate-resis 99.9 1.9E-23 4.2E-28 203.3 19.6 204 207-450 42-276 (336)
10 cd07402 MPP_GpdQ Enterobacter 99.9 9.4E-23 2E-27 203.5 20.1 192 210-450 1-213 (240)
11 cd07396 MPP_Nbla03831 Homo sap 99.9 1.7E-22 3.7E-27 205.6 18.2 197 209-449 1-246 (267)
12 PRK11148 cyclic 3',5'-adenosin 99.9 5.4E-20 1.2E-24 188.1 23.7 191 208-449 14-225 (275)
13 cd07401 MPP_TMEM62_N Homo sapi 99.9 2.4E-20 5.1E-25 188.7 18.6 192 211-429 2-216 (256)
14 cd07399 MPP_YvnB Bacillus subt 99.8 6.8E-19 1.5E-23 173.4 14.8 150 209-428 1-166 (214)
15 cd00842 MPP_ASMase acid sphing 99.7 2.4E-17 5.2E-22 170.2 14.9 193 213-426 42-264 (296)
16 PF00149 Metallophos: Calcineu 99.7 2.3E-17 4.9E-22 151.5 9.8 191 209-423 1-200 (200)
17 cd08163 MPP_Cdc1 Saccharomyces 99.7 2E-15 4.3E-20 152.6 15.8 173 225-427 35-232 (257)
18 cd07383 MPP_Dcr2 Saccharomyces 99.6 4.3E-15 9.2E-20 144.6 13.8 150 208-427 2-180 (199)
19 cd07393 MPP_DR1119 Deinococcus 99.6 9.3E-15 2E-19 145.8 16.5 190 212-447 2-226 (232)
20 TIGR03729 acc_ester putative p 99.6 1.3E-14 2.7E-19 145.4 14.7 176 210-424 1-222 (239)
21 PF14008 Metallophos_C: Iron/z 99.6 2E-15 4.3E-20 119.0 6.4 43 497-541 20-62 (62)
22 TIGR03767 P_acnes_RR metalloph 99.6 3.1E-14 6.7E-19 152.1 16.4 94 329-426 290-395 (496)
23 cd07392 MPP_PAE1087 Pyrobaculu 99.6 3.5E-14 7.5E-19 135.8 15.2 167 211-424 1-174 (188)
24 COG1409 Icc Predicted phosphoh 99.5 2.1E-13 4.6E-18 139.2 16.6 179 209-423 1-193 (301)
25 cd07400 MPP_YydB Bacillus subt 99.5 5.6E-13 1.2E-17 122.5 13.1 132 211-446 1-144 (144)
26 cd07385 MPP_YkuE_C Bacillus su 99.5 1E-12 2.2E-17 129.6 14.9 167 208-429 1-172 (223)
27 cd07404 MPP_MS158 Microscilla 99.4 3.1E-13 6.8E-18 127.5 10.2 145 211-426 1-152 (166)
28 cd07388 MPP_Tt1561 Thermus the 99.4 6.7E-12 1.5E-16 124.1 17.0 175 208-421 4-189 (224)
29 cd00840 MPP_Mre11_N Mre11 nucl 99.4 4.1E-12 8.8E-17 124.9 13.3 185 210-426 1-204 (223)
30 PRK11340 phosphodiesterase Yae 99.4 1.8E-11 3.9E-16 125.0 16.4 164 208-429 49-220 (271)
31 TIGR03768 RPA4764 metallophosp 99.3 1.9E-11 4E-16 129.7 16.2 93 329-423 291-411 (492)
32 KOG1432 Predicted DNA repair e 99.3 1.9E-10 4E-15 116.7 22.2 210 207-449 52-330 (379)
33 cd00838 MPP_superfamily metall 99.3 4.7E-11 1E-15 105.7 11.9 116 212-427 1-119 (131)
34 cd07389 MPP_PhoD Bacillus subt 99.2 3E-10 6.6E-15 112.6 14.7 177 210-426 1-207 (228)
35 cd07397 MPP_DevT Myxococcus xa 99.1 2.9E-09 6.2E-14 105.9 16.9 194 209-442 1-229 (238)
36 cd07379 MPP_239FB Homo sapiens 99.1 9.1E-10 2E-14 100.4 11.0 117 210-424 1-117 (135)
37 PF12850 Metallophos_2: Calcin 99.1 4.8E-10 1E-14 103.7 9.3 138 209-449 1-139 (156)
38 COG1408 Predicted phosphohydro 99.0 3.9E-09 8.5E-14 108.1 14.2 75 208-306 44-121 (284)
39 PRK05340 UDP-2,3-diacylglucosa 99.0 3.6E-09 7.9E-14 106.2 13.0 198 209-449 1-221 (241)
40 cd00841 MPP_YfcE Escherichia c 98.9 2.2E-08 4.9E-13 93.1 11.6 57 375-449 76-132 (155)
41 cd08166 MPP_Cdc1_like_1 unchar 98.8 1.5E-08 3.3E-13 97.6 10.5 40 377-427 112-151 (195)
42 cd08165 MPP_MPPE1 human MPPE1 98.8 3.6E-08 7.7E-13 92.4 9.9 51 232-303 36-89 (156)
43 cd07394 MPP_Vps29 Homo sapiens 98.8 8.9E-07 1.9E-11 84.8 19.7 40 401-449 97-136 (178)
44 KOG3770 Acid sphingomyelinase 98.7 1.6E-07 3.4E-12 102.3 15.3 177 225-424 199-405 (577)
45 cd07403 MPP_TTHA0053 Thermus t 98.7 4E-08 8.8E-13 89.1 8.9 49 376-426 58-106 (129)
46 TIGR00040 yfcE phosphoesterase 98.7 1.4E-07 3.1E-12 88.2 12.4 37 209-245 1-39 (158)
47 cd07384 MPP_Cdc1_like Saccharo 98.7 1.3E-07 2.8E-12 90.0 11.5 32 377-427 119-150 (171)
48 TIGR01854 lipid_A_lpxH UDP-2,3 98.7 6.1E-07 1.3E-11 89.5 16.7 73 212-303 2-81 (231)
49 PF14582 Metallophos_3: Metall 98.7 2.1E-07 4.5E-12 90.3 11.9 193 208-424 5-219 (255)
50 COG2129 Predicted phosphoester 98.6 5.3E-07 1.1E-11 87.7 14.0 178 208-426 3-190 (226)
51 cd00845 MPP_UshA_N_like Escher 98.6 5.8E-07 1.3E-11 90.5 13.4 175 209-426 1-209 (252)
52 cd08164 MPP_Ted1 Saccharomyces 98.6 2.1E-07 4.5E-12 89.7 8.5 32 377-427 129-160 (193)
53 cd07398 MPP_YbbF-LpxH Escheric 98.5 5.3E-07 1.1E-11 88.4 11.3 194 212-446 1-216 (217)
54 COG1768 Predicted phosphohydro 98.5 1.9E-06 4.2E-11 80.4 13.8 63 372-446 157-219 (230)
55 PRK09453 phosphodiesterase; Pr 98.5 6E-06 1.3E-10 79.2 16.8 75 209-303 1-76 (182)
56 cd07406 MPP_CG11883_N Drosophi 98.5 3.1E-06 6.6E-11 85.9 14.7 174 209-424 1-208 (257)
57 cd07410 MPP_CpdB_N Escherichia 98.5 5.2E-06 1.1E-10 85.0 16.4 189 209-425 1-232 (277)
58 TIGR00583 mre11 DNA repair pro 98.4 2E-06 4.4E-11 92.3 11.6 40 208-247 3-55 (405)
59 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.3 3.2E-05 7E-10 78.5 17.4 186 211-428 1-234 (262)
60 cd07411 MPP_SoxB_N Thermus the 98.3 1.6E-05 3.5E-10 80.9 14.3 155 226-423 41-219 (264)
61 COG0420 SbcD DNA repair exonuc 98.2 5.5E-06 1.2E-10 89.1 10.6 75 209-305 1-90 (390)
62 cd07382 MPP_DR1281 Deinococcus 98.2 0.00012 2.6E-09 74.0 18.0 191 210-451 1-202 (255)
63 cd07412 MPP_YhcR_N Bacillus su 98.1 8.9E-05 1.9E-09 76.5 16.8 83 359-449 178-262 (288)
64 cd07408 MPP_SA0022_N Staphyloc 98.1 3.2E-05 7E-10 78.4 12.8 181 209-425 1-215 (257)
65 TIGR00282 metallophosphoestera 98.0 0.00042 9.2E-09 70.4 19.0 194 209-452 1-206 (266)
66 cd07407 MPP_YHR202W_N Saccharo 98.0 0.00035 7.6E-09 71.9 18.6 201 208-450 5-251 (282)
67 COG0622 Predicted phosphoester 98.0 9.9E-05 2.2E-09 70.2 12.7 39 209-247 2-41 (172)
68 cd07409 MPP_CD73_N CD73 ecto-5 97.9 7.3E-05 1.6E-09 76.9 11.6 113 294-424 85-219 (281)
69 PRK09419 bifunctional 2',3'-cy 97.9 0.00018 4E-09 87.6 16.8 184 207-424 659-883 (1163)
70 PRK04036 DNA polymerase II sma 97.9 6.9E-05 1.5E-09 83.1 11.8 202 207-447 242-468 (504)
71 COG2908 Uncharacterized protei 97.9 3.2E-05 6.8E-10 76.2 7.4 189 213-448 2-216 (237)
72 TIGR00619 sbcd exonuclease Sbc 97.9 3.9E-05 8.5E-10 77.7 8.1 73 209-303 1-88 (253)
73 cd07386 MPP_DNA_pol_II_small_a 97.8 0.00024 5.1E-09 71.4 12.6 83 212-304 2-95 (243)
74 cd07405 MPP_UshA_N Escherichia 97.8 0.00043 9.3E-09 71.3 14.7 51 371-424 172-222 (285)
75 cd07424 MPP_PrpA_PrpB PrpA and 97.7 3.5E-05 7.6E-10 75.5 5.3 37 210-246 2-40 (207)
76 KOG3662 Cell division control 97.7 0.00024 5.1E-09 75.5 11.3 116 208-349 48-182 (410)
77 cd07425 MPP_Shelphs Shewanella 97.7 6.9E-05 1.5E-09 73.6 6.6 24 401-425 158-181 (208)
78 PRK10966 exonuclease subunit S 97.7 0.00011 2.4E-09 79.4 8.5 74 209-304 1-88 (407)
79 cd07390 MPP_AQ1575 Aquifex aeo 97.7 0.00038 8.3E-09 65.9 10.9 17 409-426 124-140 (168)
80 PHA02546 47 endonuclease subun 97.7 0.00012 2.7E-09 77.2 8.3 74 209-303 1-89 (340)
81 PRK09558 ushA bifunctional UDP 97.5 0.0015 3.2E-08 73.6 14.7 186 207-424 33-258 (551)
82 cd07380 MPP_CWF19_N Schizosacc 97.5 0.00044 9.6E-09 64.3 8.3 50 376-426 71-126 (150)
83 TIGR01530 nadN NAD pyrophospha 97.5 0.002 4.3E-08 72.5 15.0 113 294-424 85-219 (550)
84 COG0737 UshA 5'-nucleotidase/2 97.5 0.0021 4.6E-08 71.8 15.1 185 207-423 25-247 (517)
85 KOG2863 RNA lariat debranching 97.4 0.0018 3.9E-08 66.8 11.7 182 209-422 1-229 (456)
86 cd08162 MPP_PhoA_N Synechococc 97.2 0.0028 6.1E-08 66.2 11.6 39 209-247 1-51 (313)
87 cd07391 MPP_PF1019 Pyrococcus 97.1 0.00081 1.8E-08 63.9 6.2 51 231-303 38-88 (172)
88 PRK11907 bifunctional 2',3'-cy 96.9 0.025 5.5E-07 66.0 16.3 59 359-423 296-354 (814)
89 PHA02239 putative protein phos 96.9 0.0022 4.7E-08 64.3 6.7 70 209-303 1-73 (235)
90 COG4186 Predicted phosphoester 96.7 0.021 4.6E-07 52.7 11.4 38 376-422 110-147 (186)
91 PRK00166 apaH diadenosine tetr 96.7 0.0028 6.1E-08 64.9 5.9 67 209-303 1-69 (275)
92 PRK09419 bifunctional 2',3'-cy 96.7 0.029 6.3E-07 68.7 15.6 58 362-425 224-282 (1163)
93 TIGR00024 SbcD_rel_arch putati 96.6 0.0055 1.2E-07 61.0 7.2 70 209-303 15-102 (225)
94 PRK13625 bis(5'-nucleosyl)-tet 96.4 0.0069 1.5E-07 61.0 6.8 39 209-247 1-49 (245)
95 cd07387 MPP_PolD2_C PolD2 (DNA 96.4 0.033 7.2E-07 56.4 11.5 190 211-426 2-218 (257)
96 cd07423 MPP_PrpE Bacillus subt 96.4 0.0044 9.5E-08 61.9 5.2 68 210-303 2-80 (234)
97 PRK09418 bifunctional 2',3'-cy 96.4 0.093 2E-06 61.2 16.4 48 371-425 243-291 (780)
98 COG1311 HYS2 Archaeal DNA poly 96.3 0.084 1.8E-06 57.2 14.6 90 207-306 224-324 (481)
99 PRK09420 cpdB bifunctional 2', 96.2 0.12 2.5E-06 59.5 16.1 56 361-423 207-263 (649)
100 TIGR01390 CycNucDiestase 2',3' 96.0 0.13 2.7E-06 59.0 15.2 46 371-423 194-240 (626)
101 PF13277 YmdB: YmdB-like prote 95.8 0.31 6.8E-06 48.9 14.8 186 212-451 1-200 (253)
102 COG5555 Cytolysin, a secreted 95.8 0.021 4.5E-07 57.5 6.4 138 284-423 164-334 (392)
103 PRK09968 serine/threonine-spec 95.8 0.012 2.6E-07 58.2 4.8 37 210-246 16-54 (218)
104 PF00041 fn3: Fibronectin type 95.8 0.033 7.2E-07 45.2 6.7 76 85-186 2-77 (85)
105 PRK11439 pphA serine/threonine 95.6 0.0092 2E-07 59.0 3.5 37 210-246 18-56 (218)
106 cd07413 MPP_PA3087 Pseudomonas 95.6 0.019 4E-07 57.0 5.6 37 211-247 1-46 (222)
107 cd07381 MPP_CapA CapA and rela 95.6 0.1 2.2E-06 52.1 10.7 128 290-426 77-222 (239)
108 COG1692 Calcineurin-like phosp 95.4 0.75 1.6E-05 45.8 15.5 193 209-449 1-202 (266)
109 cd07422 MPP_ApaH Escherichia c 95.2 0.031 6.7E-07 56.7 5.5 64 212-303 2-67 (257)
110 cd00144 MPP_PPP_family phospho 95.2 0.024 5.2E-07 55.8 4.6 34 213-246 2-36 (225)
111 cd07421 MPP_Rhilphs Rhilph pho 95.1 0.041 8.9E-07 56.6 6.1 37 210-246 3-46 (304)
112 smart00854 PGA_cap Bacterial c 95.0 0.22 4.7E-06 49.9 11.1 59 361-426 162-220 (239)
113 TIGR00668 apaH bis(5'-nucleosy 94.6 0.048 1.1E-06 55.8 5.2 38 210-247 2-41 (279)
114 COG1407 Predicted ICC-like pho 94.6 0.073 1.6E-06 52.9 6.2 73 209-303 20-110 (235)
115 PF09587 PGA_cap: Bacterial ca 92.6 1.2 2.6E-05 44.9 11.2 64 357-427 169-232 (250)
116 cd07420 MPP_RdgC Drosophila me 92.3 0.24 5.3E-06 51.9 5.8 20 399-418 253-272 (321)
117 KOG2310 DNA repair exonuclease 92.2 0.44 9.5E-06 52.2 7.6 42 207-248 12-66 (646)
118 cd07416 MPP_PP2B PP2B, metallo 91.7 0.28 6.1E-06 51.1 5.4 21 399-419 222-242 (305)
119 KOG4419 5' nucleotidase [Nucle 91.4 1.6 3.4E-05 48.7 10.9 57 355-423 211-269 (602)
120 smart00156 PP2Ac Protein phosp 91.1 0.36 7.8E-06 49.4 5.5 21 399-419 200-220 (271)
121 cd07415 MPP_PP2A_PP4_PP6 PP2A, 89.9 0.43 9.3E-06 49.2 4.9 20 399-418 214-233 (285)
122 cd07414 MPP_PP1_PPKL PP1, PPKL 89.8 0.48 1E-05 49.1 5.1 20 399-418 222-241 (293)
123 cd07418 MPP_PP7 PP7, metalloph 89.2 0.69 1.5E-05 49.5 5.9 20 399-418 273-292 (377)
124 PTZ00239 serine/threonine prot 88.9 0.62 1.3E-05 48.5 5.2 20 399-418 215-234 (303)
125 PTZ00480 serine/threonine-prot 87.5 0.86 1.9E-05 47.7 5.2 20 399-418 231-250 (320)
126 cd07417 MPP_PP5_C PP5, C-termi 85.8 1.3 2.9E-05 46.3 5.5 20 399-418 233-252 (316)
127 PTZ00244 serine/threonine-prot 85.8 0.85 1.8E-05 47.3 4.0 20 399-418 224-243 (294)
128 KOG4221 Receptor mediating net 85.5 2.9 6.2E-05 50.2 8.4 34 168-201 677-713 (1381)
129 cd07419 MPP_Bsu1_C Arabidopsis 85.1 1.7 3.8E-05 45.4 6.0 21 399-419 242-262 (311)
130 cd00063 FN3 Fibronectin type 3 82.9 11 0.00024 29.4 8.9 22 164-185 56-77 (93)
131 KOG0196 Tyrosine kinase, EPH ( 79.8 12 0.00026 43.5 10.2 37 165-201 498-537 (996)
132 PF04042 DNA_pol_E_B: DNA poly 76.8 1.7 3.6E-05 42.3 2.3 83 211-305 1-93 (209)
133 KOG3325 Membrane coat complex 76.7 28 0.00062 32.3 9.8 39 400-447 97-135 (183)
134 KOG3513 Neural cell adhesion m 76.1 14 0.0003 44.3 9.8 93 85-202 822-917 (1051)
135 KOG4258 Insulin/growth factor 68.7 16 0.00035 42.6 7.8 123 84-218 487-624 (1025)
136 KOG4221 Receptor mediating net 58.9 81 0.0018 38.6 11.3 37 164-200 573-612 (1381)
137 smart00060 FN3 Fibronectin typ 57.7 10 0.00023 28.6 2.9 22 164-185 56-77 (83)
138 KOG3947 Phosphoesterases [Gene 55.8 30 0.00064 35.4 6.2 34 208-246 61-94 (305)
139 PTZ00235 DNA polymerase epsilo 48.5 1.2E+02 0.0026 31.4 9.4 80 208-303 27-122 (291)
140 PF07353 Uroplakin_II: Uroplak 39.1 34 0.00073 32.0 3.4 34 168-201 105-140 (184)
141 KOG0374 Serine/threonine speci 36.3 48 0.001 35.0 4.5 20 399-418 233-252 (331)
142 cd02852 Isoamylase_N_term Isoa 29.8 63 0.0014 28.3 3.6 23 162-184 48-70 (119)
143 cd02856 Glycogen_debranching_e 28.9 69 0.0015 27.3 3.6 23 162-184 44-66 (103)
144 KOG0372 Serine/threonine speci 27.5 1.1E+02 0.0023 31.0 4.9 35 211-247 45-82 (303)
145 KOG0371 Serine/threonine prote 26.1 95 0.0021 31.6 4.3 35 211-247 62-99 (319)
146 cd02860 Pullulanase_N_term Pul 26.0 78 0.0017 26.8 3.4 24 162-185 46-69 (100)
147 cd02853 MTHase_N_term Maltooli 25.4 83 0.0018 25.8 3.3 21 163-184 40-60 (85)
148 PF15284 PAGK: Phage-encoded v 25.1 97 0.0021 24.2 3.3 45 24-72 9-54 (61)
149 PF09294 Interfer-bind: Interf 23.7 75 0.0016 26.8 2.9 19 166-184 68-86 (106)
150 cd01987 USP_OKCHK USP domain i 22.9 4.3E+02 0.0093 22.4 7.7 20 399-418 74-93 (124)
151 TIGR02855 spore_yabG sporulati 21.2 73 0.0016 32.6 2.5 50 359-422 115-165 (283)
152 PF05582 Peptidase_U57: YabG p 20.8 90 0.002 32.1 3.1 50 359-422 116-166 (287)
153 PF10179 DUF2369: Uncharacteri 20.3 84 0.0018 32.7 2.8 18 166-183 16-33 (300)
No 1
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.2e-86 Score=687.56 Aligned_cols=420 Identities=39% Similarity=0.633 Sum_probs=363.1
Q ss_pred cccCCCCCCCccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCceEEEeecCCCCceEEEEEeCcccccCCCCCCCCCCC
Q 008312 44 IPTTLDGPFKPVTIPLDESFRGNAIDLPDTDPRVQRTVEGFEPEQISVSLSSAHDSVWISWITGEFQIGNNLKPLDPKSV 123 (570)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~P~qi~lt~~~~p~s~~I~W~T~~~~~g~~~~~~~p~~~ 123 (570)
.+..+.|+..+..+++.|+++-....++...|++ .+.|||||||+++..++|+|+|.|.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~peQvhlS~~~~~~~m~VswvT~~~~------------- 69 (452)
T KOG1378|consen 8 QSEINPKHTLHDINPLPGTLHLLSESEQLTFPSV-----VNSPEQVHLSFTDNLNEMRVSWVTGDGE------------- 69 (452)
T ss_pred eeeccCCCccccccccCcccccccccccccCccc-----CCCCCeEEEeccCCCCcEEEEEeCCCCC-------------
Confidence 4555677888888899999877777776656543 3569999999999888999999998752
Q ss_pred ccEEEEccCCCCCceE-EEeEEEEeeeecccCCccccccCeEEEEEeCCCCCCCEEEEEEecCCCCCccceeEEEcCCCC
Q 008312 124 VSVVRYGTRRSQLNRK-ATGRSLVYSQLYPFLGLQNYTSGIIHHVRLTGLKPDTLYHYQCGDPSIPAMSGTYCFRTMPDS 202 (570)
Q Consensus 124 ~~~V~yg~~~~~~~~~-a~g~~~~y~~~~p~~g~~~~~~~~~h~v~ltgL~P~T~Y~Yrvg~~~~~~~S~~~~F~T~p~~ 202 (570)
.++|+||+..++.... +.+.+..++..|.. .++++|++|+|+|++|+|+|+||||||++. .||++|+|+|+|.
T Consensus 70 ~~~V~Yg~~~~~~~~~~~~~~~~~~~~~y~~---~~~~sg~ih~~~~~~L~~~t~YyY~~Gs~~--~wS~~f~F~t~p~- 143 (452)
T KOG1378|consen 70 ENVVRYGEVKDKLDNSAARGMTEAWTDGYAN---GWRDSGYIHDAVMKNLEPNTRYYYQVGSDL--KWSEIFSFKTPPG- 143 (452)
T ss_pred CceEEEeecCCCccccccccceEEEeccccc---ccceeeeEeeeeecCCCCCceEEEEeCCCC--CcccceEeECCCC-
Confidence 3799999877664332 36666666665543 247899999999999999999999999987 6999999999982
Q ss_pred CCCCCCeEEEEEecCCCCCChHHHHHHHHhC-CCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHH
Q 008312 203 SSTSYPSRIAIVGDVGLTYNTTSTVSHMISN-RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWG 281 (570)
Q Consensus 203 ~~~~~~~rf~vigD~g~~~~~~~~i~~l~~~-~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~ 281 (570)
+..+.+|+++||+|.+.....++.+..++ ++|+|||+||++|++++.+ .+||.|+
T Consensus 144 --~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~k~d~vlhiGDlsYa~~~~n----------------------~~wD~f~ 199 (452)
T KOG1378|consen 144 --QDSPTRAAIFGDMGCTEPYTSTLRNQEENLKPDAVLHIGDLSYAMGYSN----------------------WQWDEFG 199 (452)
T ss_pred --ccCceeEEEEccccccccccchHhHHhcccCCcEEEEecchhhcCCCCc----------------------cchHHHH
Confidence 22489999999999998777777777766 4999999999999975411 5899999
Q ss_pred HhhhhhhccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcCC--CCCHHHHH
Q 008312 282 RYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSF--DKSGDQYK 359 (570)
Q Consensus 282 ~~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~--~~~~~Q~~ 359 (570)
+++|++++.+|||++.||||++..... .|..|.+||.||.+++++..++||||++|++|||+|+|+.++ ....+|++
T Consensus 200 r~vEp~As~vPymv~~GNHE~d~~~~~-~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~QY~ 278 (452)
T KOG1378|consen 200 RQVEPIASYVPYMVCSGNHEIDWPPQP-CFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTAQYQ 278 (452)
T ss_pred hhhhhhhccCceEEecccccccCCCcc-cccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccccccchHHH
Confidence 999999999999999999999876544 799999999999998888889999999999999999999875 35689999
Q ss_pred HHHHHHhccccCCCCEEEEEeCCCccccCCC-cccchH--HHHHHHHHHHHHcCCeEEEEcccccceeeeeccccCcc--
Q 008312 360 WLEEDLANVEREVTPWLVATWHAPWYSTYKA-HYREAE--CMRVAMEDLLYKYGVDVVFNGHQVHAYERSNRVYNYTL-- 434 (570)
Q Consensus 360 WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~-~~~~~~--~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~pv~n~~~-- 434 (570)
||+++|++++|+++||+||+.|+|||++... ++++.+ .+|..||+||.+|+||++|+|| +|+|||++|++|.++
T Consensus 279 WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GH-vH~YER~~piyn~~~~~ 357 (452)
T KOG1378|consen 279 WLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGH-VHRYERFCPIYNNTCGT 357 (452)
T ss_pred HHHHHHHHhcccCCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEecc-ceehhccchhhcceeec
Confidence 9999999999887999999999999998764 776665 8999999999999999999999 999999999999887
Q ss_pred --------CCCCcEEEEECCCCccCCCCCCCCCCCCCCCCCCCCCCeecCCCcccccccccCCCCCCCCCCCCCCcccee
Q 008312 435 --------DPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTTPDKILGGGKFCGFNFTSGPASGKFCWDRQPDYSAFR 506 (570)
Q Consensus 435 --------~~~g~vyiv~G~gG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~p~~~~~~~~~~p~~s~~~ 506 (570)
+++|||||++|+|||.|+++..+ .+||+|||||
T Consensus 358 ~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~---------------------------------------~~~p~~Sa~R 398 (452)
T KOG1378|consen 358 GWGPVHLVDGMAPIYITVGDGGNHEHLDPFS---------------------------------------SPQPEWSAFR 398 (452)
T ss_pred cCCcccccCCCCCEEEEEccCCcccccCccc---------------------------------------CCCCcccccc
Confidence 89999999999999999875311 2689999999
Q ss_pred eCCccEEEEEEecCCcEEEEEEEecCCceeeeEEEEEEeCCCCCCC
Q 008312 507 ESSFGHGILEVKNETHALWTWHRNQDFYEAAGDQIYIVRQPDLCPV 552 (570)
Q Consensus 507 ~~~~G~~~l~v~n~t~l~~~~~~~~d~~~~v~D~~~i~k~~~~~~~ 552 (570)
+.+|||++|+++|.||++|+|+|++|.++++.|+|||+|+...|..
T Consensus 399 ~~dfG~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl~k~~~~~~~ 444 (452)
T KOG1378|consen 399 EGDFGYTRLTAKNGTHAHVHWVRNSDASGVVIDSFWLIKDYRDMVV 444 (452)
T ss_pred cccCCeEEEEEecCceEEEEEEeccCCCceEeeeEEEEcccCcccc
Confidence 9999999999999999999999999998999999999999776544
No 2
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=1e-80 Score=668.59 Aligned_cols=378 Identities=46% Similarity=0.829 Sum_probs=331.6
Q ss_pred CCCCCCceEEEeecCCCCceEEEEEeCcccccCCCCCCCCCCCccEEEEccCCCCCceEEEeEEEEeeeecccCCccccc
Q 008312 81 VEGFEPEQISVSLSSAHDSVWISWITGEFQIGNNLKPLDPKSVVSVVRYGTRRSQLNRKATGRSLVYSQLYPFLGLQNYT 160 (570)
Q Consensus 81 ~~~~~P~qi~lt~~~~p~s~~I~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~a~g~~~~y~~~~p~~g~~~~~ 160 (570)
....+|+||||++++ +++|+|+|+|.+. ..+.|+||++++.+..++.|++.+|+.. ..|+
T Consensus 39 ~~~~~P~qvhls~~~-~~~m~V~W~T~~~-------------~~~~V~yG~~~~~l~~~a~g~~~~~~~~------~~~~ 98 (427)
T PLN02533 39 DDPTHPDQVHISLVG-PDKMRISWITQDS-------------IPPSVVYGTVSGKYEGSANGTSSSYHYL------LIYR 98 (427)
T ss_pred CCCCCCceEEEEEcC-CCeEEEEEECCCC-------------CCCEEEEecCCCCCcceEEEEEEEEecc------cccc
Confidence 355789999999998 8999999999763 2478999999999999999998888632 2467
Q ss_pred cCeEEEEEeCCCCCCCEEEEEEecCCCCCccceeEEEcCCCCCCCCCCeEEEEEecCCCCCChHHHHHHHHhCCCCEEEE
Q 008312 161 SGIIHHVRLTGLKPDTLYHYQCGDPSIPAMSGTYCFRTMPDSSSTSYPSRIAIVGDVGLTYNTTSTVSHMISNRPDLILL 240 (570)
Q Consensus 161 ~~~~h~v~ltgL~P~T~Y~Yrvg~~~~~~~S~~~~F~T~p~~~~~~~~~rf~vigD~g~~~~~~~~i~~l~~~~pDfvl~ 240 (570)
++++|+|+|+||+|+|+|+||||.. .+|++++|+|+|.. .++||+++||+|.......+++++.+.+||||||
T Consensus 99 ~g~iH~v~l~~L~p~T~Y~Yrvg~~---~~s~~~~F~T~p~~----~~~~f~v~GDlG~~~~~~~tl~~i~~~~pD~vl~ 171 (427)
T PLN02533 99 SGQINDVVIGPLKPNTVYYYKCGGP---SSTQEFSFRTPPSK----FPIKFAVSGDLGTSEWTKSTLEHVSKWDYDVFIL 171 (427)
T ss_pred CCeEEEEEeCCCCCCCEEEEEECCC---CCccceEEECCCCC----CCeEEEEEEeCCCCcccHHHHHHHHhcCCCEEEE
Confidence 8999999999999999999999965 46899999998853 3799999999998766667889998899999999
Q ss_pred cCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhhhhccCCeEEeccCccccccc--cchhhhhhhccc
Q 008312 241 VGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQA--ENRTFVAYTSRF 318 (570)
Q Consensus 241 ~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~iP~~~v~GNHD~~~~~--~~~~~~~y~~~f 318 (570)
+||++|++. |+.+|+.|.+.++++.+.+|+|+++||||..... ....|..|..+|
T Consensus 172 ~GDl~y~~~-----------------------~~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf 228 (427)
T PLN02533 172 PGDLSYANF-----------------------YQPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPILHPEKFTAYNARW 228 (427)
T ss_pred cCccccccc-----------------------hHHHHHHHHHHhhhHhhcCceEEeCccccccccccccCcCccchhhcc
Confidence 999999642 3678999999999999999999999999997432 235678899999
Q ss_pred CCCCCCCCCCCcceEEEEeCeEEEEEeecCcCCCCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccc--hH
Q 008312 319 AFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYRE--AE 396 (570)
Q Consensus 319 ~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~~~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~--~~ 396 (570)
.||.++.+...+.||||++|++|||+||++.++....+|++||+++|++++|+++||+||++|+|+|++...+..+ ..
T Consensus 229 ~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~ 308 (427)
T PLN02533 229 RMPFEESGSTSNLYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESV 308 (427)
T ss_pred cCCccccCCCCCceEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeeecccccCCcchhH
Confidence 9998776777889999999999999999999888889999999999999988889999999999999876544332 34
Q ss_pred HHHHHHHHHHHHcCCeEEEEcccccceeeeeccccCccCCCCcEEEEECCCCccCCCCCCCCCCCCCCCCCCCCCCeecC
Q 008312 397 CMRVAMEDLLYKYGVDVVFNGHQVHAYERSNRVYNYTLDPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTTPDKILG 476 (570)
Q Consensus 397 ~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~pv~n~~~~~~g~vyiv~G~gG~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (570)
.+|+.|++||++|+||++|+|| +|.|||++|+|+++++++||+||++|+||+.|++...
T Consensus 309 ~~r~~le~Ll~~~~VdlvlsGH-~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~-------------------- 367 (427)
T PLN02533 309 GMKESMETLLYKARVDLVFAGH-VHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATK-------------------- 367 (427)
T ss_pred HHHHHHHHHHHHhCCcEEEecc-eecccccccccCCccCCCCCEEEEeCCCccccccccc--------------------
Confidence 5789999999999999999999 9999999999999999999999999999999875321
Q ss_pred CCcccccccccCCCCCCCCCCCCCCccceeeCCccEEEEEEecCCcEEEEEEEecCCceeeeEEEEEEeCC
Q 008312 477 GGKFCGFNFTSGPASGKFCWDRQPDYSAFRESSFGHGILEVKNETHALWTWHRNQDFYEAAGDQIYIVRQP 547 (570)
Q Consensus 477 ~~~~~~~~~t~~p~~~~~~~~~~p~~s~~~~~~~G~~~l~v~n~t~l~~~~~~~~d~~~~v~D~~~i~k~~ 547 (570)
| ++++|+||+||+.+|||++|+|+|+|||+|+|+|++|+++.|.|+|||.|..
T Consensus 368 -----------------~-~~~~~~~s~~r~~~~G~~~l~v~n~t~l~~~~~~~~~~~~~~~D~~~i~~~~ 420 (427)
T PLN02533 368 -----------------Y-IDPKPDISLFREASFGHGQLNVVDANTMEWTWHRNDDDQSVASDSVWLKSLL 420 (427)
T ss_pred -----------------c-CCCCCCceeEEeccCCEEEEEEEcCCeEEEEEEecCCCCceeeeEEEEEecc
Confidence 1 1467899999999999999999999999999999999877899999999974
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=1.6e-47 Score=393.78 Aligned_cols=276 Identities=45% Similarity=0.782 Sum_probs=222.4
Q ss_pred CCeEEEEEecCCCC-CChHHHHHHHHh--CCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHh
Q 008312 207 YPSRIAIVGDVGLT-YNTTSTVSHMIS--NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRY 283 (570)
Q Consensus 207 ~~~rf~vigD~g~~-~~~~~~i~~l~~--~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~ 283 (570)
.++||+++||+|.. .....+++++.+ .+|||||++||++|+++.. .+.+|+.|.+.
T Consensus 3 ~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~---------------------~~~~~~~~~~~ 61 (294)
T cd00839 3 TPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYN---------------------NGSRWDTFMRQ 61 (294)
T ss_pred CcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCc---------------------cchhHHHHHHH
Confidence 37999999999973 456778888887 6899999999999864210 12579999999
Q ss_pred hhhhhccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcCC---CCCHHHHHH
Q 008312 284 MQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSF---DKSGDQYKW 360 (570)
Q Consensus 284 l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~---~~~~~Q~~W 360 (570)
++++...+|+|+++||||............+..++.++........+.||+|++|++|||+|||+... ....+|++|
T Consensus 62 ~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~W 141 (294)
T cd00839 62 IEPLASYVPYMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDW 141 (294)
T ss_pred HHHHHhcCCcEEcCcccccccCCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHH
Confidence 99998899999999999997543322111111123334333344567899999999999999998765 567999999
Q ss_pred HHHHHhccccCCCCEEEEEeCCCccccCCCccc--chHHHHHHHHHHHHHcCCeEEEEcccccceeeeeccccCc-----
Q 008312 361 LEEDLANVEREVTPWLVATWHAPWYSTYKAHYR--EAECMRVAMEDLLYKYGVDVVFNGHQVHAYERSNRVYNYT----- 433 (570)
Q Consensus 361 Le~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~--~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~pv~n~~----- 433 (570)
|+++|+++++.+.+|+||++|+|+|+....... .....++.|++||++|+|+++|+|| +|.|+|++|+++++
T Consensus 142 L~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH-~H~y~r~~p~~~~~~~~~~ 220 (294)
T cd00839 142 LEADLAKVDRSKTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGH-VHAYERTCPVYNGTVVGDC 220 (294)
T ss_pred HHHHHHHhcccCCCeEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEcc-ceeeEeechhhCCEecccc
Confidence 999999987667799999999999987543322 2456789999999999999999999 99999999998865
Q ss_pred ---cCCCCcEEEEECCCCccCCCCCCCCCCCCCCCCCCCCCCeecCCCcccccccccCCCCCCCCCCCCCCccceeeCCc
Q 008312 434 ---LDPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTTPDKILGGGKFCGFNFTSGPASGKFCWDRQPDYSAFRESSF 510 (570)
Q Consensus 434 ---~~~~g~vyiv~G~gG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~p~~~~~~~~~~p~~s~~~~~~~ 510 (570)
.+++|++||++|+||+.+...... ...++|++++...|
T Consensus 221 ~~~~~~~g~~yiv~G~~G~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~ 261 (294)
T cd00839 221 NPYSNPKGPVHIVIGAGGNDEGLDPFS---------------------------------------APPPAWSAFRESDY 261 (294)
T ss_pred ccccCCCccEEEEECCCccccCcCccc---------------------------------------CCCCCceEEEeccC
Confidence 368899999999999976532100 11258999999999
Q ss_pred cEEEEEEecCCcEEEEEEEecCCceeeeEEEEEEe
Q 008312 511 GHGILEVKNETHALWTWHRNQDFYEAAGDQIYIVR 545 (570)
Q Consensus 511 G~~~l~v~n~t~l~~~~~~~~d~~~~v~D~~~i~k 545 (570)
||++|+|.|+|+|+|+|+++.++ +|+|+|+|+|
T Consensus 262 g~~~~~~~~~t~l~~~~~~~~~g--~v~D~f~i~k 294 (294)
T cd00839 262 GFGRLTVHNSTHLHFEWIRNDDG--VVIDSFWIIK 294 (294)
T ss_pred CEEEEEEEecCeEEEEEEECCCC--eEEEEEEEeC
Confidence 99999999999999999998887 9999999986
No 4
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=100.00 E-value=4.7e-33 Score=291.26 Aligned_cols=256 Identities=16% Similarity=0.275 Sum_probs=189.8
Q ss_pred CeEEEEEecCCCCCChHHHHHHHH-----hCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHH-HH
Q 008312 208 PSRIAIVGDVGLTYNTTSTVSHMI-----SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDY-WG 281 (570)
Q Consensus 208 ~~rf~vigD~g~~~~~~~~i~~l~-----~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~-~~ 281 (570)
.++|+++||+|.+...+..+++.+ +.++||||.+||++ .++. . ...+++|+. |.
T Consensus 26 ~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF-~~Gv-----~--------------sv~Dp~f~~~FE 85 (394)
T PTZ00422 26 QLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNF-PGGV-----D--------------GLNDPKWKHCFE 85 (394)
T ss_pred eEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccc-cCCC-----C--------------CccchhHHhhHh
Confidence 689999999997655555544333 35899999999998 4432 1 112467765 55
Q ss_pred Hhhhhhh--ccCCeEEeccCccccccccchh--hh------------------hhhcccCCCCCCCCCCCcceEEE----
Q 008312 282 RYMQPVL--SKVPIMVVEGNHEYEEQAENRT--FV------------------AYTSRFAFPSKESGSLSKFYYSF---- 335 (570)
Q Consensus 282 ~~l~~l~--~~iP~~~v~GNHD~~~~~~~~~--~~------------------~y~~~f~~P~~~~~~~~~~yYSf---- 335 (570)
+...... ..+||++|+||||+.++...+- +. ....||.||. .||.+
T Consensus 86 ~vY~~~s~~L~~Pwy~vLGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~--------~yY~~~~~f 157 (394)
T PTZ00422 86 NVYSEESGDMQIPFFTVLGQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPN--------YWYHYFTHF 157 (394)
T ss_pred hhccCcchhhCCCeEEeCCcccccCCchhhhccccccccccccccccccccccccCCCccCCc--------hhheeeeee
Confidence 5555544 6799999999999976543221 11 1125777875 57754
Q ss_pred Ee-------------CeEEEEEeecCcC-----CC-CCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchH
Q 008312 336 NA-------------GGIHFLMLAAYVS-----FD-KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAE 396 (570)
Q Consensus 336 ~~-------------G~v~fI~Ldt~~~-----~~-~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~ 396 (570)
.. ..+.||+|||..- +. ....|++||+++|+.+ ++.++|+||++|||+|+++. | +...
T Consensus 158 ~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a-~k~a~WkIVvGHhPIySsG~-h-g~~~ 234 (394)
T PTZ00422 158 TDTSGPSLLKSGHKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYA-PKIADYIIVVGDKPIYSSGS-S-KGDS 234 (394)
T ss_pred ecccccccccccCCCCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhh-ccCCCeEEEEecCceeecCC-C-CCCH
Confidence 22 2389999999631 22 2578999999999754 35678999999999999864 3 3346
Q ss_pred HHHHHHHHHHHHcCCeEEEEcccccceeeeeccccCccCCCCcEEEEECCCCccCCCCCCCCCCCCCCCCCCCCCCeecC
Q 008312 397 CMRVAMEDLLYKYGVDVVFNGHQVHAYERSNRVYNYTLDPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTTPDKILG 476 (570)
Q Consensus 397 ~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~pv~n~~~~~~g~vyiv~G~gG~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (570)
+++..|+|||++|+||++|+|| +|.|||.. .+|+.||++|+||...+...
T Consensus 235 ~L~~~L~PLL~ky~VdlYisGH-DH~lq~i~--------~~gt~yIvSGaGs~~~~~~~--------------------- 284 (394)
T PTZ00422 235 YLSYYLLPLLKDAQVDLYISGY-DRNMEVLT--------DEGTAHINCGSGGNSGRKSI--------------------- 284 (394)
T ss_pred HHHHHHHHHHHHcCcCEEEEcc-ccceEEec--------CCCceEEEeCccccccCCCC---------------------
Confidence 7899999999999999999999 99999974 46899999999998643210
Q ss_pred CCcccccccccCCCCCCCCCCCCCCccceeeCCccEEEEEEecCCcEEEEEEEecCCceeeeEEEEEEeCCC
Q 008312 477 GGKFCGFNFTSGPASGKFCWDRQPDYSAFRESSFGHGILEVKNETHALWTWHRNQDFYEAAGDQIYIVRQPD 548 (570)
Q Consensus 477 ~~~~~~~~~t~~p~~~~~~~~~~p~~s~~~~~~~G~~~l~v~n~t~l~~~~~~~~d~~~~v~D~~~i~k~~~ 548 (570)
..++|+.|....+||..+++ +.+.|+++|+.+.+| ++++++.+.|.+.
T Consensus 285 ---------------------~~~~~s~F~~~~~GF~~~~l-~~~~l~~~fid~~~G--kvL~~~~~~~~~~ 332 (394)
T PTZ00422 285 ---------------------MKNSKSLFYSEDIGFCIHEL-NAEGMVTKFVSGNTG--EVLYTHKQPLKKR 332 (394)
T ss_pred ---------------------CCCCCcceecCCCCEEEEEE-ecCEEEEEEEeCCCC--cEEEEeeecccch
Confidence 12456788888899999998 889999999964555 9999999977654
No 5
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=100.00 E-value=3.4e-31 Score=270.36 Aligned_cols=243 Identities=23% Similarity=0.398 Sum_probs=173.1
Q ss_pred eEEEEEecCCCC-CC-hHHH---HHHHH-hCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHH-HHHH
Q 008312 209 SRIAIVGDVGLT-YN-TTST---VSHMI-SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRW-DYWG 281 (570)
Q Consensus 209 ~rf~vigD~g~~-~~-~~~~---i~~l~-~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~w-d~~~ 281 (570)
++|+++||+|.. .. ...+ +.+++ +.+|||||++||++|+++... .+..+| +.|.
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~-------------------~~~~~~~~~~~ 61 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGS-------------------VDDPRFETTFE 61 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCC-------------------CcchHHHHHHH
Confidence 489999999985 22 2222 23333 368999999999999753210 012333 3455
Q ss_pred HhhhhhhccCCeEEeccCccccccccch-hhhh--hhcccCCCCCCCCCCCcceEEEEeC------eEEEEEeecCcCC-
Q 008312 282 RYMQPVLSKVPIMVVEGNHEYEEQAENR-TFVA--YTSRFAFPSKESGSLSKFYYSFNAG------GIHFLMLAAYVSF- 351 (570)
Q Consensus 282 ~~l~~l~~~iP~~~v~GNHD~~~~~~~~-~~~~--y~~~f~~P~~~~~~~~~~yYSf~~G------~v~fI~Ldt~~~~- 351 (570)
+.++.+..++|+|+++||||+..+.... .+.. +..+|.+| ..||+|+++ +++||+|||....
T Consensus 62 ~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~--------~~~y~~~~~~~~~~~~~~~i~LDt~~~~~ 133 (277)
T cd07378 62 DVYSAPSLQVPWYLVLGNHDYSGNVSAQIDYTKRPNSPRWTMP--------AYYYRVSFPFPSSDTTVEFIMIDTVPLCG 133 (277)
T ss_pred HHccchhhcCCeEEecCCcccCCCchheeehhccCCCCCccCc--------chheEEEeecCCCCCEEEEEEEeChhHcC
Confidence 5665555689999999999997432111 1111 12333333 479999998 7999999997421
Q ss_pred --------------CCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEc
Q 008312 352 --------------DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNG 417 (570)
Q Consensus 352 --------------~~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsG 417 (570)
....+|++||+++|+++. .+|+||++|+|+++..... .....++.|++++.+++|+++|+|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~~~---~~~~iv~~H~P~~~~~~~~--~~~~~~~~l~~l~~~~~v~~vl~G 208 (277)
T cd07378 134 NSDDIASPYGPPNGKLAEEQLAWLEKTLAAST---ADWKIVVGHHPIYSSGEHG--PTSCLVDRLLPLLKKYKVDAYLSG 208 (277)
T ss_pred ccccccccccCcchhhHHHHHHHHHHHHHhcC---CCeEEEEeCccceeCCCCC--CcHHHHHHHHHHHHHcCCCEEEeC
Confidence 135899999999999864 3799999999999764322 224678999999999999999999
Q ss_pred ccccceeeeeccccCccCCCCcEEEEECCCCccCCCCCCCCCCCCCCCCCCCCCCeecCCCcccccccccCCCCCCCCCC
Q 008312 418 HQVHAYERSNRVYNYTLDPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTTPDKILGGGKFCGFNFTSGPASGKFCWD 497 (570)
Q Consensus 418 H~~H~YeR~~pv~n~~~~~~g~vyiv~G~gG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~p~~~~~~~~ 497 (570)
| .|.+++..+ +..|+.||++|+||...+..... ..
T Consensus 209 H-~H~~~~~~~------~~~~~~~i~~G~~~~~~~~~~~~--------------------------------------~~ 243 (277)
T cd07378 209 H-DHNLQHIKD------DGSGTSFVVSGAGSKARPSVKHI--------------------------------------DK 243 (277)
T ss_pred C-cccceeeec------CCCCcEEEEeCCCcccCCCCCcc--------------------------------------Cc
Confidence 9 999998864 23699999999998865432100 01
Q ss_pred CCCCccceeeCCccEEEEEEecCCcEEEEEEE
Q 008312 498 RQPDYSAFRESSFGHGILEVKNETHALWTWHR 529 (570)
Q Consensus 498 ~~p~~s~~~~~~~G~~~l~v~n~t~l~~~~~~ 529 (570)
.+|.|+.++...+||.+|+| +..++.++|+.
T Consensus 244 ~~~~~~~~~~~~~Gy~~i~v-~~~~l~~~~~~ 274 (277)
T cd07378 244 VPQFFSGFTSSGGGFAYLEL-TKEELTVRFYD 274 (277)
T ss_pred ccccccccccCCCCEEEEEE-ecCEEEEEEEC
Confidence 23468888999999999999 45689999984
No 6
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.95 E-value=1.1e-26 Score=235.47 Aligned_cols=205 Identities=23% Similarity=0.367 Sum_probs=146.8
Q ss_pred CCeEEEEEecCCCCCC-----------------hHHHHHHHHhC--CCCEEEEcCCcccccccccCCCCCCcccccCCCC
Q 008312 207 YPSRIAIVGDVGLTYN-----------------TTSTVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANS 267 (570)
Q Consensus 207 ~~~rf~vigD~g~~~~-----------------~~~~i~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~ 267 (570)
.+++|++++|+|.+.. ....++.+.+. +|||||++||+++.. ..
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~------~~----------- 65 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAM------PG----------- 65 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCC------cc-----------
Confidence 3799999999998731 12334555555 899999999999642 10
Q ss_pred CcccchHHHHHHHHHhhhhhhccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeec
Q 008312 268 PIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAA 347 (570)
Q Consensus 268 ~~~e~Y~~~wd~~~~~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt 347 (570)
.+..+.+|+.+.+.++.+...+|+++++||||+........+..|...| +..||+|++|+++||+|||
T Consensus 66 --~~~~~~~~~~~~~~~~~~~~~vp~~~i~GNHD~~~~~~~~~~~~f~~~~----------g~~~y~~~~~~~~~i~lds 133 (262)
T cd07395 66 --DELRERQVSDLKDVLSLLDPDIPLVCVCGNHDVGNTPTEESIKDYRDVF----------GDDYFSFWVGGVFFIVLNS 133 (262)
T ss_pred --hhhHHHHHHHHHHHHhhccCCCcEEEeCCCCCCCCCCChhHHHHHHHHh----------CCcceEEEECCEEEEEecc
Confidence 0111245777777777776689999999999986432222333444444 2358999999999999999
Q ss_pred CcCC------CCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcc----cchHHHHHHHHHHHHHcCCeEEEEc
Q 008312 348 YVSF------DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHY----REAECMRVAMEDLLYKYGVDVVFNG 417 (570)
Q Consensus 348 ~~~~------~~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~----~~~~~~r~~l~~ll~~y~VdlvlsG 417 (570)
.... ....+|++||+++|+++.+.+.+|+||++|+|++....... ......+++|.++|++++|+++|+|
T Consensus 134 ~~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~G 213 (262)
T cd07395 134 QLFFDPSEVPELAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSG 213 (262)
T ss_pred ccccCccccccchHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEEC
Confidence 6422 13579999999999997645567899999999986432211 1224567899999999999999999
Q ss_pred ccccceeeeeccccCccCCCCcEEEEECCCCc
Q 008312 418 HQVHAYERSNRVYNYTLDPCGPVHITVGDGGN 449 (570)
Q Consensus 418 H~~H~YeR~~pv~n~~~~~~g~vyiv~G~gG~ 449 (570)
| .|.+++.. -.|+.|++++++|.
T Consensus 214 H-~H~~~~~~--------~~g~~~~~~~~~~~ 236 (262)
T cd07395 214 H-YHRNAGGR--------YGGLEMVVTSAIGA 236 (262)
T ss_pred c-cccCCceE--------ECCEEEEEcCceec
Confidence 9 99987743 24777777777664
No 7
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.95 E-value=8.1e-26 Score=246.60 Aligned_cols=315 Identities=21% Similarity=0.287 Sum_probs=160.1
Q ss_pred cCCC-CceEEEEEeCcccccCCCCCCCCCCCccEEEEccCCCCCceEEEeEEEEeeeecccCCccccccCeEEEEEeCCC
Q 008312 94 SSAH-DSVWISWITGEFQIGNNLKPLDPKSVVSVVRYGTRRSQLNRKATGRSLVYSQLYPFLGLQNYTSGIIHHVRLTGL 172 (570)
Q Consensus 94 ~~~p-~s~~I~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~a~g~~~~y~~~~p~~g~~~~~~~~~h~v~ltgL 172 (570)
+||| .+.+|.|+...+.......| ..+..|+|..+.+.....+.....+... ....++++|.|+||
T Consensus 5 sGdp~~~svilWtR~~~~~~~~~~~----~~~~~V~~~va~d~~~~~~~~~~~~~~~---------~~~d~t~~v~v~gL 71 (453)
T PF09423_consen 5 SGDPTPDSVILWTRVTPPAAAGGMP----KAPVPVRWEVATDPEFSNVVRSGTVTTT---------AERDFTVKVDVTGL 71 (453)
T ss_dssp EE---SS-EEEEEE--SBGGTB-------SS-EEEEEEEESSTTSSSEEEEEEEEE----------GGGTTEEEEEE-S-
T ss_pred ccCCCCCEEEEEEEecCcccCCCCC----CCcEEEEEEEECCCCccceEEecceecc---------cCCCeEeecccCCC
Confidence 4677 57888999876521111111 1234566666544433322222221111 13568999999999
Q ss_pred CCCCEEEEEEecCCCCCccceeEEEcCCCCCCCCCCeEEEEEecCCCCCChHHHHHHHHh-CCCCEEEEcCCccccccc-
Q 008312 173 KPDTLYHYQCGDPSIPAMSGTYCFRTMPDSSSTSYPSRIAIVGDVGLTYNTTSTVSHMIS-NRPDLILLVGDVTYANLY- 250 (570)
Q Consensus 173 ~P~T~Y~Yrvg~~~~~~~S~~~~F~T~p~~~~~~~~~rf~vigD~g~~~~~~~~i~~l~~-~~pDfvl~~GDl~Y~d~~- 250 (570)
+|+|+|+||+........|.+++|+|+|..... ++||+++||.+.......+++++.+ .+|||+||+||.+|++..
T Consensus 72 ~p~t~Y~Y~~~~~~~~~~s~~g~~rT~p~~~~~--~~r~a~~SC~~~~~~~~~~~~~~a~~~~~D~~l~lGD~IY~d~~~ 149 (453)
T PF09423_consen 72 QPGTRYYYRFVVDGGGQTSPVGRFRTAPDGDPD--PFRFAFGSCQNYEDGYFPAYRRIAERDDPDFVLHLGDQIYEDGGG 149 (453)
T ss_dssp -TT-EEEEEEEE--TTEE---EEEE--TT-------EEEEEE----CCC---HHHHHHTT-S--SEEEE-S-SS----TT
T ss_pred CCCceEEEEEEEecCCCCCCceEEEcCCCCCCC--ceEEEEECCCCcccChHHHHHhhhccCCCcEEEEeCCeeeccCCc
Confidence 999999999988544578899999999765433 6999999999876566788899988 699999999999999741
Q ss_pred -ccCCCCCCcccccCC--CCCcccchHHHHHHHH--HhhhhhhccCCeEEeccCccccccccc----------hh-----
Q 008312 251 -LTNGTGSDCYACSFA--NSPIHETYQPRWDYWG--RYMQPVLSKVPIMVVEGNHEYEEQAEN----------RT----- 310 (570)
Q Consensus 251 -~~~G~~~~c~~~~~~--~~~~~e~Y~~~wd~~~--~~l~~l~~~iP~~~v~GNHD~~~~~~~----------~~----- 310 (570)
..+.......+...| .....+.|+.+|..+. ..++.+.+.+|+++++.+||+.++... ..
T Consensus 150 ~~~~~~~~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~~~ 229 (453)
T PF09423_consen 150 GYGNLSRRPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQDRR 229 (453)
T ss_dssp SS--TT---S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT-BTTB-STT---HHHHHHHH
T ss_pred ccccccccccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceecccccCCccccccccccchHHHH
Confidence 000000000000111 1223456666666543 336777889999999999999866431 00
Q ss_pred hhhhhccc-CCCCCC---CCCCCcceEEEEeCe-EEEEEeecCcCCC---------------------CCHHHHHHHHHH
Q 008312 311 FVAYTSRF-AFPSKE---SGSLSKFYYSFNAGG-IHFLMLAAYVSFD---------------------KSGDQYKWLEED 364 (570)
Q Consensus 311 ~~~y~~~f-~~P~~~---~~~~~~~yYSf~~G~-v~fI~Ldt~~~~~---------------------~~~~Q~~WLe~~ 364 (570)
..+++..+ .+|... .+.....|++|.+|+ +.|++||+....+ .+.+|++||++.
T Consensus 230 ~~a~~ay~e~~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~ 309 (453)
T PF09423_consen 230 RAAYQAYFEYQPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDW 309 (453)
T ss_dssp HHHHHHHHHHS---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHH
T ss_pred HHHHHHHHhhcCccCCCccCCCCceEEEEecCCceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHH
Confidence 11222222 133321 123456899999999 9999999863211 268999999999
Q ss_pred HhccccCCCCEEEEEeCCCccccCC-----------CcccchHHHHHHHHHHHHHcCCe--EEEEcccccceeeee
Q 008312 365 LANVEREVTPWLVATWHAPWYSTYK-----------AHYREAECMRVAMEDLLYKYGVD--VVFNGHQVHAYERSN 427 (570)
Q Consensus 365 L~~~~r~~~pwiIV~~H~P~y~s~~-----------~~~~~~~~~r~~l~~ll~~y~Vd--lvlsGH~~H~YeR~~ 427 (570)
|++. .++|+|+..-.|+..... ..+......|++|.++|.+.++. ++|+|. +|...-..
T Consensus 310 L~~s---~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGD-vH~~~~~~ 381 (453)
T PF09423_consen 310 LASS---QATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGD-VHASAASR 381 (453)
T ss_dssp HHH-----SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-S-SSSEEEEE
T ss_pred HhcC---CCcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecC-cchheeee
Confidence 9984 488999998887754321 22333455689999999988875 899999 99876654
No 8
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.9e-24 Score=222.74 Aligned_cols=308 Identities=19% Similarity=0.261 Sum_probs=207.4
Q ss_pred cCCC-CceEEEEEeCcccccCCCCCCCCC-CCccEEEEccCCCCCceEEEeEEEEeeeecccCCccccccCeEEEEEeCC
Q 008312 94 SSAH-DSVWISWITGEFQIGNNLKPLDPK-SVVSVVRYGTRRSQLNRKATGRSLVYSQLYPFLGLQNYTSGIIHHVRLTG 171 (570)
Q Consensus 94 ~~~p-~s~~I~W~T~~~~~g~~~~~~~p~-~~~~~V~yg~~~~~~~~~a~g~~~~y~~~~p~~g~~~~~~~~~h~v~ltg 171 (570)
+||| ....|.|+.-++. |++-. .+...++|++.++-.+.+..|+..+ .-...+.+||.++|
T Consensus 45 SGDp~~~svviWTRl~P~------p~~~g~~v~V~wEvs~~~~f~~ivr~gt~~a-----------~p~~dhtv~v~~~g 107 (522)
T COG3540 45 SGDPTATSVVIWTRLDPE------PLNGGRPVPVIWEVSTDENFSNIVRKGTVIA-----------SPELDHTVHVDLRG 107 (522)
T ss_pred cCCCCCCeEEEEEccCCc------cccCCCCcceEEEecCCccHHHHHhcCCccC-----------CcccCceEEEeccC
Confidence 5788 5788999987753 22222 3455677777665433333333211 01346899999999
Q ss_pred CCCCCEEEEEEecCCCCCccceeEEEcCCCCCCCCCCeEEEEEecCCCCCChHHHHHHHHhCCCCEEEEcCCcccccccc
Q 008312 172 LKPDTLYHYQCGDPSIPAMSGTYCFRTMPDSSSTSYPSRIAIVGDVGLTYNTTSTVSHMISNRPDLILLVGDVTYANLYL 251 (570)
Q Consensus 172 L~P~T~Y~Yrvg~~~~~~~S~~~~F~T~p~~~~~~~~~rf~vigD~g~~~~~~~~i~~l~~~~pDfvl~~GDl~Y~d~~~ 251 (570)
|+|++.|+||+..++ ..|.+++|||+|+.+....-++|++.++.|...+.-.+.++|.+.+|||+||+||.+|+++..
T Consensus 108 L~P~~~yfYRf~~~~--~~spvGrtrTapa~~~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~~~D~viH~GDyIYeyg~~ 185 (522)
T COG3540 108 LSPDQDYFYRFKAGD--ERSPVGRTRTAPAPGRAIRFVWFADASCQGWEIGYMTAYKTMAKEEPDFVIHLGDYIYEYGPI 185 (522)
T ss_pred CCCCceEEEEEeeCC--ccccccccccCCCCCCcchhhhhhhccccccccchhHHHHHHHhcCCCEEEEcCCeeeccCCc
Confidence 999999999998776 778999999999987643334455555555555667788999999999999999999997532
Q ss_pred cCCCCCCcccc-cCCC-----CCcccchHHHHHHHH--HhhhhhhccCCeEEeccCccccccccc-----------h---
Q 008312 252 TNGTGSDCYAC-SFAN-----SPIHETYQPRWDYWG--RYMQPVLSKVPIMVVEGNHEYEEQAEN-----------R--- 309 (570)
Q Consensus 252 ~~G~~~~c~~~-~~~~-----~~~~e~Y~~~wd~~~--~~l~~l~~~iP~~~v~GNHD~~~~~~~-----------~--- 309 (570)
..-.+...... ...+ ....+.|+.+|.++. ..++...+..||++.+.+||+.++... +
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~NN~~~~~~~nD~~~~~k~~~ 265 (522)
T COG3540 186 PDEVSLNSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVANNWSNSIDENDSRYDEKDFV 265 (522)
T ss_pred ccccccccccccccCCCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccccccccccccccCCCCChHHHH
Confidence 10000000000 1111 112357777777654 457778899999999999999876321 1
Q ss_pred --hhhhhhccc-CCCCCCCCC--CCcceEEEEeCe-EEEEEeecCcCC------C----------------CCHHHHHHH
Q 008312 310 --TFVAYTSRF-AFPSKESGS--LSKFYYSFNAGG-IHFLMLAAYVSF------D----------------KSGDQYKWL 361 (570)
Q Consensus 310 --~~~~y~~~f-~~P~~~~~~--~~~~yYSf~~G~-v~fI~Ldt~~~~------~----------------~~~~Q~~WL 361 (570)
.-.+++..+ .||...... ....|.+|.+|+ +.|.+||+.... + .+.+|.+||
T Consensus 266 ~r~a~A~qAyyE~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWL 345 (522)
T COG3540 266 LRAAAARQAYYEHMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWL 345 (522)
T ss_pred HHHHHHHHHHHHhCccccccCCccceeeeeeccccccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHH
Confidence 112333333 477653322 368999999998 789999986322 0 268999999
Q ss_pred HHHHhccccCCCCEEEEEeCCCccccC--CC-----------cccchHHHHHHHHHHHHHcCCe--EEEEccccccee
Q 008312 362 EEDLANVEREVTPWLVATWHAPWYSTY--KA-----------HYREAECMRVAMEDLLYKYGVD--VVFNGHQVHAYE 424 (570)
Q Consensus 362 e~~L~~~~r~~~pwiIV~~H~P~y~s~--~~-----------~~~~~~~~r~~l~~ll~~y~Vd--lvlsGH~~H~Ye 424 (570)
++.|.+ +++.|.|+..-.|+---. .. .+.....-|+.|...+...++. ++|.|. +|...
T Consensus 346 k~~L~~---SkatWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~LtgD-vH~~w 419 (522)
T COG3540 346 KRGLGA---SKATWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIADRKIRNTVVLTGD-VHYSW 419 (522)
T ss_pred Hhhhhh---cchhhhhhhhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHhcCCCCcEEEech-hHHHH
Confidence 999998 678999998888763210 00 0111223488999999999876 999999 99644
No 9
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.9e-23 Score=203.27 Aligned_cols=204 Identities=23% Similarity=0.343 Sum_probs=137.2
Q ss_pred CCeEEEEEecCCCCC--ChHHHHHHH---H-hCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHH-H
Q 008312 207 YPSRIAIVGDVGLTY--NTTSTVSHM---I-SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWD-Y 279 (570)
Q Consensus 207 ~~~rf~vigD~g~~~--~~~~~i~~l---~-~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd-~ 279 (570)
..++|+++||+|... +......++ . +.+.||||.+||++|.++..+ .++++++ .
T Consensus 42 gslsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~-------------------~~Dp~Fq~s 102 (336)
T KOG2679|consen 42 GSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTS-------------------ENDPRFQDS 102 (336)
T ss_pred CceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCC-------------------CCChhHHhh
Confidence 379999999999653 222222222 2 358999999999999865421 1123332 2
Q ss_pred HHHhhhhhhccCCeEEeccCccccccccch---hhhhhhcccCCCCCCCCCCCcceEE----EE--eCeEEEEEeecCc-
Q 008312 280 WGRYMQPVLSKVPIMVVEGNHEYEEQAENR---TFVAYTSRFAFPSKESGSLSKFYYS----FN--AGGIHFLMLAAYV- 349 (570)
Q Consensus 280 ~~~~l~~l~~~iP~~~v~GNHD~~~~~~~~---~~~~y~~~f~~P~~~~~~~~~~yYS----f~--~G~v~fI~Ldt~~- 349 (570)
|.+....-....||+.+.||||+.++...+ -+.....||..|.. ||. .+ .=++.++++|+.+
T Consensus 103 F~nIYT~pSLQkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~rs--------f~~~ae~ve~f~v~~~~f~~d~~~~ 174 (336)
T KOG2679|consen 103 FENIYTAPSLQKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPRS--------FYVDAEIVEMFFVDTTPFMDDTFTL 174 (336)
T ss_pred hhhcccCcccccchhhhccCccccCchhhhhhHHHHhhccceecccH--------Hhhcceeeeeeccccccchhhheec
Confidence 334333223456999999999999875432 24455567766542 221 11 1124444544432
Q ss_pred ------CCC-------CCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEE
Q 008312 350 ------SFD-------KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFN 416 (570)
Q Consensus 350 ------~~~-------~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~Vdlvls 416 (570)
++. -...++.||+..|++ +.++|+||++|+|+.+.. +.+...|+++.|.|||++++||++++
T Consensus 175 ~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~---S~a~wkiVvGHh~i~S~~--~HG~T~eL~~~LlPiL~~n~VdlY~n 249 (336)
T KOG2679|consen 175 CTDDVYDWRGVLPRVKYLRALLSWLEVALKA---SRAKWKIVVGHHPIKSAG--HHGPTKELEKQLLPILEANGVDLYIN 249 (336)
T ss_pred ccccccccccCChHHHHHHHHHHHHHHHHHH---hhcceEEEecccceehhh--ccCChHHHHHHHHHHHHhcCCcEEEe
Confidence 111 136789999999998 568899999999999863 44668899999999999999999999
Q ss_pred cccccceeeeeccccCccCC-CCcEEEEECCCCcc
Q 008312 417 GHQVHAYERSNRVYNYTLDP-CGPVHITVGDGGNR 450 (570)
Q Consensus 417 GH~~H~YeR~~pv~n~~~~~-~g~vyiv~G~gG~~ 450 (570)
|| +|+.|... ++ .++-|+++|+|...
T Consensus 250 GH-DHcLQhis-------~~e~~iqf~tSGagSka 276 (336)
T KOG2679|consen 250 GH-DHCLQHIS-------SPESGIQFVTSGAGSKA 276 (336)
T ss_pred cc-hhhhhhcc-------CCCCCeeEEeeCCcccc
Confidence 99 99999985 33 45667777776543
No 10
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.90 E-value=9.4e-23 Score=203.50 Aligned_cols=192 Identities=22% Similarity=0.331 Sum_probs=134.7
Q ss_pred EEEEEecCCCCCCh-------------HHHHHHHHhC--CCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchH
Q 008312 210 RIAIVGDVGLTYNT-------------TSTVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQ 274 (570)
Q Consensus 210 rf~vigD~g~~~~~-------------~~~i~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~ 274 (570)
||++++|+|.+... ..+++.+.+. +||+||++||+++. +. .
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~------~~------------------~ 56 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDD------GS------------------P 56 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCC------CC------------------H
Confidence 69999999987431 2345555555 89999999999953 21 1
Q ss_pred HHHHHHHHhhhhhhccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcCC---
Q 008312 275 PRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSF--- 351 (570)
Q Consensus 275 ~~wd~~~~~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~--- 351 (570)
..|+.+.+.++.+ .+|++.++||||... .+...|..... .....+|+|+.++++||+||+....
T Consensus 57 ~~~~~~~~~l~~~--~~p~~~v~GNHD~~~--------~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~lds~~~~~~~ 123 (240)
T cd07402 57 ESYERLRELLAAL--PIPVYLLPGNHDDRA--------AMRAVFPELPP---APGFVQYVVDLGGWRLILLDSSVPGQHG 123 (240)
T ss_pred HHHHHHHHHHhhc--CCCEEEeCCCCCCHH--------HHHHhhccccc---cccccceeEecCCEEEEEEeCCCCCCcC
Confidence 3456666666665 799999999999842 12222211100 2345689999999999999986432
Q ss_pred -CCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccc-hHHHHHHHHHHHHHc-CCeEEEEcccccceeeeec
Q 008312 352 -DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYRE-AECMRVAMEDLLYKY-GVDVVFNGHQVHAYERSNR 428 (570)
Q Consensus 352 -~~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~-~~~~r~~l~~ll~~y-~VdlvlsGH~~H~YeR~~p 428 (570)
....+|++||++.|++.. ..++|+++|+|++......... ....++.+.+++.++ +|+++|+|| .|......
T Consensus 124 ~~~~~~ql~wL~~~L~~~~---~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH-~H~~~~~~- 198 (240)
T cd07402 124 GELCAAQLDWLEAALAEAP---DKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGH-VHRPIDGS- 198 (240)
T ss_pred CEECHHHHHHHHHHHHhCC---CCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECC-cCchHHeE-
Confidence 136789999999999864 2357888899887643211111 111267899999999 999999999 99876553
Q ss_pred cccCccCCCCcEEEEECCCCcc
Q 008312 429 VYNYTLDPCGPVHITVGDGGNR 450 (570)
Q Consensus 429 v~n~~~~~~g~vyiv~G~gG~~ 450 (570)
-+|+.++++|+.|..
T Consensus 199 -------~~g~~~~~~gs~~~~ 213 (240)
T cd07402 199 -------WGGIPLLTAPSTCHQ 213 (240)
T ss_pred -------ECCEEEEEcCcceee
Confidence 368888888887764
No 11
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.89 E-value=1.7e-22 Score=205.57 Aligned_cols=197 Identities=20% Similarity=0.274 Sum_probs=134.7
Q ss_pred eEEEEEecCCCCCCh--------------HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchH
Q 008312 209 SRIAIVGDVGLTYNT--------------TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQ 274 (570)
Q Consensus 209 ~rf~vigD~g~~~~~--------------~~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~ 274 (570)
|||++++|+|..... ..+++++.+.+||+||++||+++. |.. ..+
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~------~~~---------------~~~ 59 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDG------DNA---------------RAE 59 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecC------CCc---------------hHH
Confidence 699999999965421 234566666789999999999953 110 012
Q ss_pred HHHHHHHHhhhhhhccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcC----
Q 008312 275 PRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVS---- 350 (570)
Q Consensus 275 ~~wd~~~~~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~---- 350 (570)
..|+.+.+.++.+ .+|+++++||||....... .+. ..+ . ...+..||+|+.++++||+||+...
T Consensus 60 ~~~~~~~~~l~~l--~~p~~~v~GNHD~~~~~~~-~~~---~~~--~----~~~~~~yysf~~~~~~~i~lds~~~~~~~ 127 (267)
T cd07396 60 EALDAVLAILDRL--KGPVHHVLGNHDLYNPSRE-YLL---LYT--L----LGLGAPYYSFSPGGIRFIVLDGYDISALG 127 (267)
T ss_pred HHHHHHHHHHHhc--CCCEEEecCccccccccHh-hhh---ccc--c----cCCCCceEEEecCCcEEEEEeCCcccccc
Confidence 3455555555554 5899999999999643211 110 011 0 1234579999999999999999521
Q ss_pred ------------------------------CCCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHH
Q 008312 351 ------------------------------FDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRV 400 (570)
Q Consensus 351 ------------------------------~~~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~ 400 (570)
-....+|++||+++|+++..+ ..++||++|+|++....... .....++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~-~~~viV~~Hhp~~~~~~~~~-~~~~~~~ 205 (267)
T cd07396 128 RPEDTPKAENADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADAN-GEKVIIFSHFPLHPESTSPH-GLLWNHE 205 (267)
T ss_pred CCCCChhhhhHHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHHhc-CCeEEEEEeccCCCCCCCcc-ccccCHH
Confidence 023579999999999987533 24589999999876442111 1111257
Q ss_pred HHHHHHHHc-CCeEEEEcccccceeeeeccccCccCCCCcEEEEECCCCc
Q 008312 401 AMEDLLYKY-GVDVVFNGHQVHAYERSNRVYNYTLDPCGPVHITVGDGGN 449 (570)
Q Consensus 401 ~l~~ll~~y-~VdlvlsGH~~H~YeR~~pv~n~~~~~~g~vyiv~G~gG~ 449 (570)
.+.++|.++ +|+++|+|| +|.++... .+|+.|+++|+-..
T Consensus 206 ~~~~ll~~~~~V~~v~~GH-~H~~~~~~--------~~gi~~~~~~a~~~ 246 (267)
T cd07396 206 EVLSILRAYGCVKACISGH-DHEGGYAQ--------RHGIHFLTLEGMVE 246 (267)
T ss_pred HHHHHHHhCCCEEEEEcCC-cCCCCccc--------cCCeeEEEechhhc
Confidence 888999996 799999999 99987543 46888888877554
No 12
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.86 E-value=5.4e-20 Score=188.05 Aligned_cols=191 Identities=20% Similarity=0.262 Sum_probs=120.1
Q ss_pred CeEEEEEecCCCCC---------Ch----HHHHHHHHhC--CCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccc
Q 008312 208 PSRIAIVGDVGLTY---------NT----TSTVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHET 272 (570)
Q Consensus 208 ~~rf~vigD~g~~~---------~~----~~~i~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~ 272 (570)
++||++++|+|... +. ..+++++.+. +|||||++||++.. |.
T Consensus 14 ~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~------~~----------------- 70 (275)
T PRK11148 14 RVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQD------HS----------------- 70 (275)
T ss_pred CEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCC------CC-----------------
Confidence 79999999999742 11 2345555443 69999999999952 21
Q ss_pred hHHHHHHHHHhhhhhhccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcCC-
Q 008312 273 YQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSF- 351 (570)
Q Consensus 273 Y~~~wd~~~~~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~- 351 (570)
...++.+.+.++.+ .+|+++++||||... .+..+.....+ ...++.+..++++||+||+....
T Consensus 71 -~~~~~~~~~~l~~l--~~Pv~~v~GNHD~~~-----~~~~~~~~~~~--------~~~~~~~~~~~~~~i~Lds~~~g~ 134 (275)
T PRK11148 71 -SEAYQHFAEGIAPL--RKPCVWLPGNHDFQP-----AMYSALQDAGI--------SPAKHVLIGEHWQILLLDSQVFGV 134 (275)
T ss_pred -HHHHHHHHHHHhhc--CCcEEEeCCCCCChH-----HHHHHHhhcCC--------CccceEEecCCEEEEEecCCCCCC
Confidence 12345556666655 589999999999842 11111111111 11233344556999999996421
Q ss_pred ---CCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCccc-chHHHHHHHHHHHHHc-CCeEEEEcccccceeee
Q 008312 352 ---DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYR-EAECMRVAMEDLLYKY-GVDVVFNGHQVHAYERS 426 (570)
Q Consensus 352 ---~~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~-~~~~~r~~l~~ll~~y-~VdlvlsGH~~H~YeR~ 426 (570)
..+.+|++||+++|++... .+-+|+++|+|+... ..... ......++|.+++++| +|+++|+|| +|.....
T Consensus 135 ~~G~l~~~ql~wL~~~L~~~~~--~~~vv~~hH~P~~~~-~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH-~H~~~~~ 210 (275)
T PRK11148 135 PHGELSEYQLEWLERKLADAPE--RHTLVLLHHHPLPAG-CAWLDQHSLRNAHELAEVLAKFPNVKAILCGH-IHQELDL 210 (275)
T ss_pred cCCEeCHHHHHHHHHHHhhCCC--CCeEEEEcCCCCCCC-cchhhccCCCCHHHHHHHHhcCCCceEEEecc-cChHHhc
Confidence 2368999999999998642 222444545565432 11110 0011246899999998 899999999 9986443
Q ss_pred eccccCccCCCCcEEEEECCCCc
Q 008312 427 NRVYNYTLDPCGPVHITVGDGGN 449 (570)
Q Consensus 427 ~pv~n~~~~~~g~vyiv~G~gG~ 449 (570)
. .+|+.++++++.+.
T Consensus 211 ~--------~~gi~~~~~ps~~~ 225 (275)
T PRK11148 211 D--------WNGRRLLATPSTCV 225 (275)
T ss_pred e--------ECCEEEEEcCCCcC
Confidence 1 35777776666554
No 13
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.85 E-value=2.4e-20 Score=188.70 Aligned_cols=192 Identities=19% Similarity=0.245 Sum_probs=125.5
Q ss_pred EEEEecCCCCCCh--------HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHH
Q 008312 211 IAIVGDVGLTYNT--------TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGR 282 (570)
Q Consensus 211 f~vigD~g~~~~~--------~~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~ 282 (570)
|++++|+|.+... ...++.+.+.+||+||++||++.... ..+. -...++.+|+.|.+
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~--~~~~-------------~~~~~~~~~~~~~~ 66 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKT--GNKL-------------PSYQYQEEWQKYYN 66 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccc--cCCC-------------cccccHHHHHHHHH
Confidence 7899999987431 11234455679999999999995321 0110 01123567888888
Q ss_pred hhhhhh--ccCCeEEeccCccccccccchhhhhhhccc-CCCCCCCCCCCcceEE--EEeCeEEEEEeecCcC-------
Q 008312 283 YMQPVL--SKVPIMVVEGNHEYEEQAENRTFVAYTSRF-AFPSKESGSLSKFYYS--FNAGGIHFLMLAAYVS------- 350 (570)
Q Consensus 283 ~l~~l~--~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f-~~P~~~~~~~~~~yYS--f~~G~v~fI~Ldt~~~------- 350 (570)
.+.... ...|++.++||||+.+.........|..+| .... ....+|. ++.|+++||+|||...
T Consensus 67 ~~~~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~y~~~~~-----~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~ 141 (256)
T cd07401 67 ILKESSVINKEKWFDIRGNHDLFNIPSLDSENNYYRKYSATGR-----DGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPF 141 (256)
T ss_pred HHHHhCCCCcceEEEeCCCCCcCCCCCccchhhHHHHhheecC-----CCccceEEEecCCCEEEEEEcCccCCCCCCCC
Confidence 775543 258999999999996432221122222222 1110 1122333 3459999999999632
Q ss_pred ---CCCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeeee
Q 008312 351 ---FDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERSN 427 (570)
Q Consensus 351 ---~~~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~ 427 (570)
.....+|++||+++|++.. +.+++||++|+|++...... . ...+ .+.++|++++|+++|+|| .|.+++..
T Consensus 142 ~~~g~l~~~ql~wL~~~L~~~~--~~~~~IV~~HhP~~~~~~~~-~--~~~~-~~~~ll~~~~v~~vl~GH-~H~~~~~~ 214 (256)
T cd07401 142 NFFGSLDKKLLDRLEKELEKST--NSNYTIWFGHYPTSTIISPS-A--KSSS-KFKDLLKKYNVTAYLCGH-LHPLGGLE 214 (256)
T ss_pred ceeccCCHHHHHHHHHHHHhcc--cCCeEEEEEcccchhccCCC-c--chhH-HHHHHHHhcCCcEEEeCC-ccCCCcce
Confidence 1235899999999999864 34589999999987532211 1 1122 389999999999999999 99999966
Q ss_pred cc
Q 008312 428 RV 429 (570)
Q Consensus 428 pv 429 (570)
|+
T Consensus 215 p~ 216 (256)
T cd07401 215 PV 216 (256)
T ss_pred ee
Confidence 65
No 14
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.80 E-value=6.8e-19 Score=173.41 Aligned_cols=150 Identities=19% Similarity=0.252 Sum_probs=108.4
Q ss_pred eEEEEEecCCCCCCh-----HH----HHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHH
Q 008312 209 SRIAIVGDVGLTYNT-----TS----TVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDY 279 (570)
Q Consensus 209 ~rf~vigD~g~~~~~-----~~----~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~ 279 (570)
|||++++|+|..... .. .++.+.+.+||+||++||+++.. . ...+|+.
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~------~-----------------~~~~~~~ 57 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDG------D-----------------NDAEWEA 57 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCC------C-----------------CHHHHHH
Confidence 689999999975331 12 23334456899999999999631 1 0246888
Q ss_pred HHHhhhhhh-ccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcCCCCCHHHH
Q 008312 280 WGRYMQPVL-SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQY 358 (570)
Q Consensus 280 ~~~~l~~l~-~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~~~~~~Q~ 358 (570)
+.+.++.+. ..+|+++++||||. ++.+|+ ....+|+
T Consensus 58 ~~~~~~~l~~~~~p~~~~~GNHD~---------------------------------------~~~ld~----~~~~~ql 94 (214)
T cd07399 58 ADKAFARLDKAGIPYSVLAGNHDL---------------------------------------VLALEF----GPRDEVL 94 (214)
T ss_pred HHHHHHHHHHcCCcEEEECCCCcc---------------------------------------hhhCCC----CCCHHHH
Confidence 888888885 67999999999992 233333 2358999
Q ss_pred HHHHHHHhccccCCCCEEEEEeCCCccccCCCcccc-----hHHHHHHHHHHHHHc-CCeEEEEcccccceeeeec
Q 008312 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYRE-----AECMRVAMEDLLYKY-GVDVVFNGHQVHAYERSNR 428 (570)
Q Consensus 359 ~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~-----~~~~r~~l~~ll~~y-~VdlvlsGH~~H~YeR~~p 428 (570)
+||+++|++.. .+++||++|+|++......... .+..++.|++|+++| +|+++|+|| +|.+.+...
T Consensus 95 ~WL~~~L~~~~---~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH-~H~~~~~~~ 166 (214)
T cd07399 95 QWANEVLKKHP---DRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGH-VHGAGRTTL 166 (214)
T ss_pred HHHHHHHHHCC---CCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccc-cCCCceEEE
Confidence 99999999853 2458999999998654221111 123456788999999 799999999 999988753
No 15
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.74 E-value=2.4e-17 Score=170.16 Aligned_cols=193 Identities=20% Similarity=0.286 Sum_probs=126.2
Q ss_pred EEecCCCCCC---hHHHHHHHHhC--CCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHH-HHHHHHHhhhh
Q 008312 213 IVGDVGLTYN---TTSTVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQP-RWDYWGRYMQP 286 (570)
Q Consensus 213 vigD~g~~~~---~~~~i~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~-~wd~~~~~l~~ 286 (570)
-+|+.+.... ..++++.+.+. +|||||++||+++.+.+.. ..+.... .+..+.+.++.
T Consensus 42 ~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~----------------~~~~~~~~~~~~~~~~l~~ 105 (296)
T cd00842 42 PWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQ----------------TPETLVLISISNLTSLLKK 105 (296)
T ss_pred CCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhh----------------chhHHHHHHHHHHHHHHHH
Confidence 3566664432 23466777766 8999999999997543200 0000000 24555666776
Q ss_pred hhccCCeEEeccCcccccccc-------chhhhhhhcccC--CCCCCC-CCCCcceEEEE-eCeEEEEEeecCcCC----
Q 008312 287 VLSKVPIMVVEGNHEYEEQAE-------NRTFVAYTSRFA--FPSKES-GSLSKFYYSFN-AGGIHFLMLAAYVSF---- 351 (570)
Q Consensus 287 l~~~iP~~~v~GNHD~~~~~~-------~~~~~~y~~~f~--~P~~~~-~~~~~~yYSf~-~G~v~fI~Ldt~~~~---- 351 (570)
....+|+++++||||...... ...+..+...|. ++.... ......||++. .++++||+|||...+
T Consensus 106 ~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~ 185 (296)
T cd00842 106 AFPDTPVYPALGNHDSYPVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNF 185 (296)
T ss_pred hCCCCCEEEcCCCCCCCcccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccCh
Confidence 677899999999999975421 122233333331 332111 11245789998 889999999996421
Q ss_pred -------CCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcC--CeEEEEcccccc
Q 008312 352 -------DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYG--VDVVFNGHQVHA 422 (570)
Q Consensus 352 -------~~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~--VdlvlsGH~~H~ 422 (570)
....+|++||+++|+++.+... .+||++|+|+....... ....+++|.+|+++|+ |.++|+|| +|.
T Consensus 186 ~~~~~~~~~~~~Ql~WL~~~L~~a~~~~~-~v~I~~HiPp~~~~~~~---~~~~~~~~~~ii~~y~~~i~~~~~GH-~H~ 260 (296)
T cd00842 186 WLLGSNETDPAGQLQWLEDELQEAEQAGE-KVWIIGHIPPGVNSYDT---LENWSERYLQIINRYSDTIAGQFFGH-THR 260 (296)
T ss_pred hhhccCCCCHHHHHHHHHHHHHHHHHCCC-eEEEEeccCCCCccccc---chHHHHHHHHHHHHHHHhhheeeecc-ccc
Confidence 2247899999999999764433 46778899987643221 1345788999999997 78899999 998
Q ss_pred eeee
Q 008312 423 YERS 426 (570)
Q Consensus 423 YeR~ 426 (570)
.+-.
T Consensus 261 d~~~ 264 (296)
T cd00842 261 DEFR 264 (296)
T ss_pred ceEE
Confidence 7655
No 16
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.71 E-value=2.3e-17 Score=151.52 Aligned_cols=191 Identities=23% Similarity=0.283 Sum_probs=101.0
Q ss_pred eEEEEEecCCCCCChH-----HHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHH-H
Q 008312 209 SRIAIVGDVGLTYNTT-----STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWG-R 282 (570)
Q Consensus 209 ~rf~vigD~g~~~~~~-----~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~-~ 282 (570)
+||+++||+|...... .......+.++|+||++||+++.... ...+.... .
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~-----------------------~~~~~~~~~~ 57 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNP-----------------------SEEWRAQFWF 57 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSH-----------------------HHHHHHHHHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccc-----------------------cccchhhhcc
Confidence 6999999999985433 22333446799999999999975211 11111111 1
Q ss_pred hhhhhhccCCeEEeccCccccccccchhhhhhhcccCC-CCCCCCCCCcceEEEEeCeEEEEEeecCcCCCCCHHHHHHH
Q 008312 283 YMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAF-PSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWL 361 (570)
Q Consensus 283 ~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~-P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~~~~~~Q~~WL 361 (570)
........+|+++++||||+.................. .........+...........+..............+..|+
T Consensus 58 ~~~~~~~~~~~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (200)
T PF00149_consen 58 FIRLLNPKIPVYFILGNHDYYSGNSFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWW 137 (200)
T ss_dssp HHHHHHTTTTEEEEE-TTSSHHHHHHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHH
T ss_pred chhhhhccccccccccccccceeccccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcc
Confidence 23344678999999999999753221111111111100 00000000000011112222222222211111223333333
Q ss_pred HHHHhccccCCCCEEEEEeCCCccccCCCccc--chHHHHHHHHHHHHHcCCeEEEEcccccce
Q 008312 362 EEDLANVEREVTPWLVATWHAPWYSTYKAHYR--EAECMRVAMEDLLYKYGVDVVFNGHQVHAY 423 (570)
Q Consensus 362 e~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~--~~~~~r~~l~~ll~~y~VdlvlsGH~~H~Y 423 (570)
...+....+...+++||++|+|++........ .....++.++.++.+++|+++|+|| +|.|
T Consensus 138 ~~~~~~~~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH-~H~~ 200 (200)
T PF00149_consen 138 LWLLLLLEAKNDDPVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGH-THRY 200 (200)
T ss_dssp HHHHHHHHEEEESEEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEES-SSSE
T ss_pred cccccccccccccceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCc-eecC
Confidence 33333222345678999999999986543211 0123578899999999999999999 9987
No 17
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.65 E-value=2e-15 Score=152.57 Aligned_cols=173 Identities=17% Similarity=0.206 Sum_probs=109.3
Q ss_pred HHHHHHHh-CCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhhhhccCCeEEeccCcccc
Q 008312 225 STVSHMIS-NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE 303 (570)
Q Consensus 225 ~~i~~l~~-~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~iP~~~v~GNHD~~ 303 (570)
+.+..+.+ .+||+||++||++.. |... ..+.+...+++|.+.+.++...+|++.++||||+.
T Consensus 35 ~~~~~~~~~l~PD~vv~lGDL~d~------G~~~-----------~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig 97 (257)
T cd08163 35 RNWRYMQKQLKPDSTIFLGDLFDG------GRDW-----------ADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIG 97 (257)
T ss_pred HHHHHHHHhcCCCEEEEecccccC------CeeC-----------cHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccC
Confidence 34455544 589999999999853 2210 00112222344445454443458999999999985
Q ss_pred cccc--chhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcC-----CCCCHHHHHHHHHHHhccccCCCCEE
Q 008312 304 EQAE--NRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVS-----FDKSGDQYKWLEEDLANVEREVTPWL 376 (570)
Q Consensus 304 ~~~~--~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~-----~~~~~~Q~~WLe~~L~~~~r~~~pwi 376 (570)
.... ......|...|. ..+|+|++|+++||+||+..- .....+|.+||++.|+..... ..+
T Consensus 98 ~~~~~~~~~~~rf~~~Fg----------~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~~~--~p~ 165 (257)
T cd08163 98 FGNGVVLPVRQRFEKYFG----------PTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKVKS--KPR 165 (257)
T ss_pred CCCCCCHHHHHHHHHHhC----------CCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhccCCC--CcE
Confidence 3321 123345555663 236899999999999999531 123568999999999875432 237
Q ss_pred EEEeCCCccccCCCcc---cch------------H-HH-HHHHHHHHHHcCCeEEEEcccccceeeee
Q 008312 377 VATWHAPWYSTYKAHY---REA------------E-CM-RVAMEDLLYKYGVDVVFNGHQVHAYERSN 427 (570)
Q Consensus 377 IV~~H~P~y~s~~~~~---~~~------------~-~~-r~~l~~ll~~y~VdlvlsGH~~H~YeR~~ 427 (570)
|++.|+|+|......- ++. + .+ .+.-..||.+.++.+||+|| +|.|=...
T Consensus 166 ILl~H~Plyr~~~~~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGh-dH~~C~~~ 232 (257)
T cd08163 166 ILLTHVPLYRPPNTSCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGD-DHDYCEVV 232 (257)
T ss_pred EEEeccccccCCCCCCCCccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecC-CCccceeE
Confidence 9999999985421100 000 0 11 23444788888999999999 99886653
No 18
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.62 E-value=4.3e-15 Score=144.61 Aligned_cols=150 Identities=20% Similarity=0.244 Sum_probs=96.6
Q ss_pred CeEEEEEecCCCCCCh------------HHHHHHH-HhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchH
Q 008312 208 PSRIAIVGDVGLTYNT------------TSTVSHM-ISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQ 274 (570)
Q Consensus 208 ~~rf~vigD~g~~~~~------------~~~i~~l-~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~ 274 (570)
.+||++++|+|..... ...+.++ .+.+||+||++||+++.... . .
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~------------------~-~--- 59 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENT------------------N-D--- 59 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCC------------------c-h---
Confidence 5899999999986432 1223333 34689999999999974211 0 0
Q ss_pred HHHHHHHHhhhhhh-ccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcCCCC
Q 008312 275 PRWDYWGRYMQPVL-SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDK 353 (570)
Q Consensus 275 ~~wd~~~~~l~~l~-~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~~~ 353 (570)
..+..|.++++.+. ..+|+++++||||. .-..
T Consensus 60 ~~~~~~~~~~~~l~~~~~p~~~~~GNHD~-----------------------------------------------~g~l 92 (199)
T cd07383 60 NSTSALDKAVSPMIDRKIPWAATFGNHDG-----------------------------------------------YDWI 92 (199)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECccCCC-----------------------------------------------CCCC
Confidence 12344445555543 46999999999991 0113
Q ss_pred CHHHHHHHHHHHhccc--cCCCCEEEEEeCCCccccCCC---------cccchH---HHHH-HHHHHHHHcCCeEEEEcc
Q 008312 354 SGDQYKWLEEDLANVE--REVTPWLVATWHAPWYSTYKA---------HYREAE---CMRV-AMEDLLYKYGVDVVFNGH 418 (570)
Q Consensus 354 ~~~Q~~WLe~~L~~~~--r~~~pwiIV~~H~P~y~s~~~---------~~~~~~---~~r~-~l~~ll~~y~VdlvlsGH 418 (570)
...|++||+++|++.. +....+.++++|+|+...... ...+.. .... .+..+.+..+|+++|+||
T Consensus 93 ~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH 172 (199)
T cd07383 93 RPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGH 172 (199)
T ss_pred CHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCC
Confidence 4789999999999863 233457899999998653211 111100 1122 344445667899999999
Q ss_pred cccceeeee
Q 008312 419 QVHAYERSN 427 (570)
Q Consensus 419 ~~H~YeR~~ 427 (570)
+|.++...
T Consensus 173 -~H~~~~~~ 180 (199)
T cd07383 173 -DHGNDFCG 180 (199)
T ss_pred -CCCcceec
Confidence 99987654
No 19
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.62 E-value=9.3e-15 Score=145.78 Aligned_cols=190 Identities=15% Similarity=0.207 Sum_probs=115.6
Q ss_pred EEEecCCCCC--------C---hHHHHHHHHhC------CCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchH
Q 008312 212 AIVGDVGLTY--------N---TTSTVSHMISN------RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQ 274 (570)
Q Consensus 212 ~vigD~g~~~--------~---~~~~i~~l~~~------~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~ 274 (570)
.+++|+|... - ..+.++++.+. +||+||++||+++. +. .
T Consensus 2 ~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~------~~-----------------~- 57 (232)
T cd07393 2 FAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWA------MK-----------------L- 57 (232)
T ss_pred eEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccC------CC-----------------h-
Confidence 5788999762 1 13455555543 89999999999842 11 0
Q ss_pred HHHHHHHHhhhhhhccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCc-CCC-
Q 008312 275 PRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYV-SFD- 352 (570)
Q Consensus 275 ~~wd~~~~~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~-~~~- 352 (570)
.+.....+.++.+ ..|+++|+||||+.... ...++..+. .. +.......++.++++.|++++.+. ++.
T Consensus 58 ~~~~~~l~~l~~l--~~~v~~V~GNHD~~~~~----~~~~~~~l~--~~--~~~~~~n~~~~~~~i~i~G~~~~~~~~~~ 127 (232)
T cd07393 58 EEAKLDLAWIDAL--PGTKVLLKGNHDYWWGS----ASKLRKALE--ES--RLALLFNNAYIDDDVAICGTRGWDNPGNP 127 (232)
T ss_pred HHHHHHHHHHHhC--CCCeEEEeCCccccCCC----HHHHHHHHH--hc--CeEEeccCcEEECCEEEEEEEeeCCCCCc
Confidence 1122223334333 35789999999984211 122222111 00 000001344667889999886321 100
Q ss_pred ---------------CCHHHHHHHHHHHhccccCC-CCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEE
Q 008312 353 ---------------KSGDQYKWLEEDLANVEREV-TPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFN 416 (570)
Q Consensus 353 ---------------~~~~Q~~WLe~~L~~~~r~~-~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~Vdlvls 416 (570)
...+|++||++.|+++.... ..++|++.|+|++.... . ...+..++++++++++|+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~----~----~~~~~~~~~~~~v~~vl~ 199 (232)
T cd07393 128 WPPINETLKVEEDEKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANENG----D----DSPISKLIEEYGVDICVY 199 (232)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCC----C----HHHHHHHHHHcCCCEEEE
Confidence 12569999999999864332 24689999999876431 1 235678899999999999
Q ss_pred cccccceeeeeccccCccCCCCcEEEEECCC
Q 008312 417 GHQVHAYERSNRVYNYTLDPCGPVHITVGDG 447 (570)
Q Consensus 417 GH~~H~YeR~~pv~n~~~~~~g~vyiv~G~g 447 (570)
|| +|.+++..|+.. .-+|+.|+++.++
T Consensus 200 GH-~H~~~~~~~~~~---~~~gi~~~~~~~~ 226 (232)
T cd07393 200 GH-LHGVGRDRAING---ERGGIRYQLVSAD 226 (232)
T ss_pred CC-CCCCcccccccc---eECCEEEEEEcch
Confidence 99 999998776532 2357777765544
No 20
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.60 E-value=1.3e-14 Score=145.42 Aligned_cols=176 Identities=15% Similarity=0.202 Sum_probs=106.7
Q ss_pred EEEEEecCCCCCCh---H----HHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHH
Q 008312 210 RIAIVGDVGLTYNT---T----STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGR 282 (570)
Q Consensus 210 rf~vigD~g~~~~~---~----~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~ 282 (570)
||++++|+|...+. . ..++.+.+.++|+||++||++.. . .+...+.+
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~------~--------------------~~~~~~~~ 54 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISND------F--------------------QRSLPFIE 54 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccc------h--------------------hhHHHHHH
Confidence 58999999975322 2 24555666789999999999942 0 01122333
Q ss_pred hhhhhhccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcCCC----------
Q 008312 283 YMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFD---------- 352 (570)
Q Consensus 283 ~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~~---------- 352 (570)
.+..+ ..+|++.++||||+..... +..+...+. + ....+.++.+..++++|++++.+.++.
T Consensus 55 ~l~~~-~~~pv~~v~GNHD~~~~~~---~~~~~~~~~-~----~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~ 125 (239)
T TIGR03729 55 KLQEL-KGIKVTFNAGNHDMLKDLT---YEEIESNDS-P----LYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEI 125 (239)
T ss_pred HHHHh-cCCcEEEECCCCCCCCCCC---HHHHHhccc-h----hhhcccccccCCCceEEEeeccceecccccccCHHHH
Confidence 33332 4589999999999852211 111222110 0 011223334445778888888543321
Q ss_pred ---------------------CCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCC------CcccchH--HHHHHHH
Q 008312 353 ---------------------KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYK------AHYREAE--CMRVAME 403 (570)
Q Consensus 353 ---------------------~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~------~~~~~~~--~~r~~l~ 403 (570)
...+|++||++.|++.... .+|+++|+|+..... ..+.... .....|+
T Consensus 126 ~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~---~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~ 202 (239)
T TIGR03729 126 LRWKKSFWFDRRIKRPMSDPERTAIVLKQLKKQLNQLDNK---QVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFG 202 (239)
T ss_pred HHhhhcEEeecccCCCCChHHHHHHHHHHHHHHHHhcCCC---CEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHH
Confidence 1267899999999886422 277888888754211 1111100 1137889
Q ss_pred HHHHHcCCeEEEEccccccee
Q 008312 404 DLLYKYGVDVVFNGHQVHAYE 424 (570)
Q Consensus 404 ~ll~~y~VdlvlsGH~~H~Ye 424 (570)
+++++++|+++|+|| +|.-.
T Consensus 203 ~li~~~~v~~~i~GH-~H~~~ 222 (239)
T TIGR03729 203 QLLVKYEIKDVIFGH-LHRRF 222 (239)
T ss_pred HHHHHhCCCEEEECC-ccCCC
Confidence 999999999999999 99765
No 21
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=99.59 E-value=2e-15 Score=119.02 Aligned_cols=43 Identities=40% Similarity=0.678 Sum_probs=32.3
Q ss_pred CCCCCccceeeCCccEEEEEEecCCcEEEEEEEecCCceeeeEEE
Q 008312 497 DRQPDYSAFRESSFGHGILEVKNETHALWTWHRNQDFYEAAGDQI 541 (570)
Q Consensus 497 ~~~p~~s~~~~~~~G~~~l~v~n~t~l~~~~~~~~d~~~~v~D~~ 541 (570)
.++|+|+++|..+|||++|+|.|+|||+|||+++.|+ +|+|+|
T Consensus 20 ~~~~~wsa~r~~~~Gy~~l~v~N~T~l~~e~i~~~~g--~v~D~f 62 (62)
T PF14008_consen 20 YPPPEWSAFRDSEYGYGRLTVANATHLHWEFIRSDDG--SVLDEF 62 (62)
T ss_dssp SS--TTEEEEE---EEEEEEE-SSSEEEEEEEETTS---T-CEE-
T ss_pred CCCCCeeeeeccccCEEEEEEEcCCeEEEEEEECCCC--cEecCC
Confidence 4679999999999999999999999999999999887 899997
No 22
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.58 E-value=3.1e-14 Score=152.08 Aligned_cols=94 Identities=22% Similarity=0.347 Sum_probs=71.2
Q ss_pred CcceEEEE-eCeEEEEEeecCcCC-----CCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcc-----cchHH
Q 008312 329 SKFYYSFN-AGGIHFLMLAAYVSF-----DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHY-----REAEC 397 (570)
Q Consensus 329 ~~~yYSf~-~G~v~fI~Ldt~~~~-----~~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~-----~~~~~ 397 (570)
+..||+|+ .++++||+|||.... ....+|++||+++|++. ..+++||++|||++....... .....
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a---~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~ 366 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRAS---SDTLFVLFSHHTSWSMVNELTDPVDPGEKRH 366 (496)
T ss_pred CCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcC---CCCCEEEEECCCCcccccccccccccccccc
Confidence 56799999 899999999996421 23689999999999974 345689999999886532111 01112
Q ss_pred HHHHHHHHHHHc-CCeEEEEcccccceeee
Q 008312 398 MRVAMEDLLYKY-GVDVVFNGHQVHAYERS 426 (570)
Q Consensus 398 ~r~~l~~ll~~y-~VdlvlsGH~~H~YeR~ 426 (570)
..++|.++|++| +|.++|+|| .|.....
T Consensus 367 n~~eLldLL~~ypnV~aVfsGH-vH~n~i~ 395 (496)
T TIGR03767 367 LGTELVSLLLEHPNVLAWVNGH-THSNKIT 395 (496)
T ss_pred CHHHHHHHHhcCCCceEEEECC-cCCCccc
Confidence 347899999998 799999999 9976644
No 23
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.58 E-value=3.5e-14 Score=135.77 Aligned_cols=167 Identities=19% Similarity=0.199 Sum_probs=101.4
Q ss_pred EEEEecCCCCCChHHHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhhhhcc
Q 008312 211 IAIVGDVGLTYNTTSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSK 290 (570)
Q Consensus 211 f~vigD~g~~~~~~~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~ 290 (570)
|+++||+|........ ..+.+.++|+||++||+++. +. ......+ +.++. ..
T Consensus 1 i~~~sD~H~~~~~~~~-~~~~~~~~D~vv~~GDl~~~------~~------------------~~~~~~~-~~l~~--~~ 52 (188)
T cd07392 1 ILAISDIHGDVEKLEA-IILKAEEADAVIVAGDITNF------GG------------------KEAAVEI-NLLLA--IG 52 (188)
T ss_pred CEEEEecCCCHHHHHH-HHhhccCCCEEEECCCccCc------CC------------------HHHHHHH-HHHHh--cC
Confidence 5789999986433222 34456689999999999953 21 0111112 33332 36
Q ss_pred CCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcC------CCCCHHHHHHHHHH
Q 008312 291 VPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVS------FDKSGDQYKWLEED 364 (570)
Q Consensus 291 iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~------~~~~~~Q~~WLe~~ 364 (570)
+|+++++||||.... .......... ..+ ..+.++++.|+++++... .....+|++|+ +.
T Consensus 53 ~p~~~v~GNHD~~~~-----~~~~~~~~~~-------~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~ 117 (188)
T cd07392 53 VPVLAVPGNCDTPEI-----LGLLTSAGLN-------LHG--KVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GR 117 (188)
T ss_pred CCEEEEcCCCCCHHH-----HHhhhcCcEe-------cCC--CEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-hh
Confidence 899999999997421 1111000000 011 245678899999987421 12357899998 44
Q ss_pred HhccccCCCCEEEEEeCCCccccCCC-cccchHHHHHHHHHHHHHcCCeEEEEccccccee
Q 008312 365 LANVEREVTPWLVATWHAPWYSTYKA-HYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYE 424 (570)
Q Consensus 365 L~~~~r~~~pwiIV~~H~P~y~s~~~-~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~Ye 424 (570)
|+.. ..+..|+++|+|++..... .......-.+.+.+++++++++++|+|| +|.-.
T Consensus 118 l~~~---~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH-~H~~~ 174 (188)
T cd07392 118 LNNL---LAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIEERQPLLCICGH-IHESR 174 (188)
T ss_pred hhcc---CCCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHHHhCCcEEEEec-ccccc
Confidence 4432 2345788889998763111 1111011246788999999999999999 99754
No 24
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.53 E-value=2.1e-13 Score=139.25 Aligned_cols=179 Identities=25% Similarity=0.331 Sum_probs=116.6
Q ss_pred eEEEEEecCCCC--CC-hH----HHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHH
Q 008312 209 SRIAIVGDVGLT--YN-TT----STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWG 281 (570)
Q Consensus 209 ~rf~vigD~g~~--~~-~~----~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~ 281 (570)
+||++++|.|.. .. .. ..++++...+||+||++||+++. |. ...++...
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~------~~------------------~~~~~~~~ 56 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTND------GE------------------PEEYRRLK 56 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCC------CC------------------HHHHHHHH
Confidence 489999999988 22 22 23455556789999999999963 22 12334455
Q ss_pred HhhhhhhccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEe-CeEEEEEeecCcC----CCCCHH
Q 008312 282 RYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNA-GGIHFLMLAAYVS----FDKSGD 356 (570)
Q Consensus 282 ~~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~-G~v~fI~Ldt~~~----~~~~~~ 356 (570)
++++.+....|++++|||||..... ...+...+.... ..+..... ++++++.+|+... ...+..
T Consensus 57 ~~l~~~~~~~~~~~vpGNHD~~~~~----~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~ 125 (301)
T COG1409 57 ELLARLELPAPVIVVPGNHDARVVN----GEAFSDQFFNRY-------AVLVGACSSGGWRVIGLDSSVPGVPLGRLGAE 125 (301)
T ss_pred HHHhhccCCCceEeeCCCCcCCchH----HHHhhhhhcccC-------cceEeeccCCceEEEEecCCCCCCCCCEECHH
Confidence 6666555678999999999986432 222222221110 01111222 6789999999743 224789
Q ss_pred HHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcC--CeEEEEcccccce
Q 008312 357 QYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYG--VDVVFNGHQVHAY 423 (570)
Q Consensus 357 Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~--VdlvlsGH~~H~Y 423 (570)
|++||++.|++........+|+++|+|..................+..++..++ |+++|+|| .|..
T Consensus 126 q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH-~H~~ 193 (301)
T COG1409 126 QLDWLEEALAAAPERAKDTVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGH-IHLA 193 (301)
T ss_pred HHHHHHHHHHhCccccCceEEEecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCc-cccc
Confidence 999999999986533112467888888776443322222233456778888888 99999999 9976
No 25
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.47 E-value=5.6e-13 Score=122.52 Aligned_cols=132 Identities=23% Similarity=0.338 Sum_probs=89.7
Q ss_pred EEEEecCCCCCChH-----------HHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHH
Q 008312 211 IAIVGDVGLTYNTT-----------STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDY 279 (570)
Q Consensus 211 f~vigD~g~~~~~~-----------~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~ 279 (570)
|++++|+|.+.... ..++.+.+.++|+|+++||+++. +. +.+|+.
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~------~~------------------~~~~~~ 56 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQR------GL------------------PEEFEE 56 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCC------CC------------------HHHHHH
Confidence 57899999874321 12334446789999999999963 21 245666
Q ss_pred HHHhhhhhhcc-CCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcCCCCCHHHH
Q 008312 280 WGRYMQPVLSK-VPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQY 358 (570)
Q Consensus 280 ~~~~l~~l~~~-iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~~~~~~Q~ 358 (570)
+.++++.+... +|++.++||||.
T Consensus 57 ~~~~~~~l~~~~~~~~~v~GNHD~-------------------------------------------------------- 80 (144)
T cd07400 57 AREFLDALPAPLEPVLVVPGNHDV-------------------------------------------------------- 80 (144)
T ss_pred HHHHHHHccccCCcEEEeCCCCeE--------------------------------------------------------
Confidence 77777776443 699999999996
Q ss_pred HHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeeeeccccCccCCCC
Q 008312 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERSNRVYNYTLDPCG 438 (570)
Q Consensus 359 ~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~pv~n~~~~~~g 438 (570)
|+++|+|++......... ...++.+.+++.+++++++++|| +|......-. ...++
T Consensus 81 ------------------iv~~Hhp~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~GH-~H~~~~~~~~----~~~~~ 136 (144)
T cd07400 81 ------------------IVVLHHPLVPPPGSGRER-LLDAGDALKLLAEAGVDLVLHGH-KHVPYVGNIS----NAGGG 136 (144)
T ss_pred ------------------EEEecCCCCCCCcccccc-CCCHHHHHHHHHHcCCCEEEECC-CCCcCeeecc----CCCCC
Confidence 777788887643221111 11356789999999999999999 9987654311 12345
Q ss_pred cEEEEECC
Q 008312 439 PVHITVGD 446 (570)
Q Consensus 439 ~vyiv~G~ 446 (570)
++++..|+
T Consensus 137 ~~~~~aGs 144 (144)
T cd07400 137 LVVIGAGT 144 (144)
T ss_pred EEEEecCC
Confidence 66665553
No 26
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.46 E-value=1e-12 Score=129.57 Aligned_cols=167 Identities=19% Similarity=0.227 Sum_probs=102.3
Q ss_pred CeEEEEEecCCCCCCh-----HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHH
Q 008312 208 PSRIAIVGDVGLTYNT-----TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGR 282 (570)
Q Consensus 208 ~~rf~vigD~g~~~~~-----~~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~ 282 (570)
++||++++|+|..... ...++.+.+.+||+|+++||+++.... .. +.+.+
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~------------------------~~-~~~~~ 55 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVD------------------------VL-ELLLE 55 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcch------------------------hh-HHHHH
Confidence 4799999999987432 345555666799999999999963210 01 34455
Q ss_pred hhhhhhccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcCCCCCHHHHHHHH
Q 008312 283 YMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLE 362 (570)
Q Consensus 283 ~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~~~~~~Q~~WLe 362 (570)
.++.+....|+++++||||+....... +........+. -..+.+..++.++..+..+.-. ......+++.
T Consensus 56 ~l~~l~~~~~v~~v~GNHD~~~~~~~~-~~~~l~~~~v~-----~L~~~~~~~~~~~~~i~i~G~~----~~~~~~~~~~ 125 (223)
T cd07385 56 LLKKLKAPLGVYAVLGNHDYYSGDEEN-WIEALESAGIT-----VLRNESVEISVGGATIGIAGVD----DGLGRRPDLE 125 (223)
T ss_pred HHhccCCCCCEEEECCCcccccCchHH-HHHHHHHcCCE-----EeecCcEEeccCCeEEEEEecc----CccccCCCHH
Confidence 666666679999999999986432211 01111111111 1123345566665444444311 1122345677
Q ss_pred HHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeeeecc
Q 008312 363 EDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERSNRV 429 (570)
Q Consensus 363 ~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~pv 429 (570)
+.+++.+. ....|++.|.|.+.. .+.+.++|++++|| +|..|...|.
T Consensus 126 ~~~~~~~~--~~~~I~l~H~P~~~~-----------------~~~~~~~dl~l~GH-tHggqi~~~~ 172 (223)
T cd07385 126 KALKGLDE--DDPNILLAHQPDTAE-----------------EAAAWGVDLQLSGH-THGGQIRLPG 172 (223)
T ss_pred HHHhCCCC--CCCEEEEecCCChhH-----------------HhcccCccEEEecc-CCCCEEeccc
Confidence 77766443 346899999985431 12567999999999 9999976654
No 27
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.45 E-value=3.1e-13 Score=127.49 Aligned_cols=145 Identities=19% Similarity=0.292 Sum_probs=88.7
Q ss_pred EEEEecCCCCCChHHHH--HHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhhhh
Q 008312 211 IAIVGDVGLTYNTTSTV--SHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVL 288 (570)
Q Consensus 211 f~vigD~g~~~~~~~~i--~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~ 288 (570)
|+++||+|......... +.+.+.++|+|+++||+++.. . ...+.. ......
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~------~------------------~~~~~~---~~~~~~ 53 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLT------D------------------APRFAP---LLLALK 53 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCc------c------------------hHHHHH---HHHhhc
Confidence 57899999875433221 223456899999999999531 1 011211 223334
Q ss_pred ccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcCCCC-CHHHHHHHHHHHhc
Q 008312 289 SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDK-SGDQYKWLEEDLAN 367 (570)
Q Consensus 289 ~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~~~-~~~Q~~WLe~~L~~ 367 (570)
...|+++++||||+. +.|+....+.++.. +.++.+|+.++++
T Consensus 54 ~~~~v~~v~GNHD~~------------------------------------~~~~G~~~w~~~~~~~~~~~~~~~~d~~- 96 (166)
T cd07404 54 GFEPVIYVPGNHEFY------------------------------------VRIIGTTLWSDISLFGEAAARMRMNDFR- 96 (166)
T ss_pred CCccEEEeCCCcceE------------------------------------EEEEeeecccccCccchHHHHhCCCCCC-
Confidence 568999999999984 22222222222222 2355666666654
Q ss_pred cccCCCCEEEEEeCCCccccCCCc---cc-chHHHHHHHHHHHHHcCCeEEEEcccccceeee
Q 008312 368 VEREVTPWLVATWHAPWYSTYKAH---YR-EAECMRVAMEDLLYKYGVDVVFNGHQVHAYERS 426 (570)
Q Consensus 368 ~~r~~~pwiIV~~H~P~y~s~~~~---~~-~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~ 426 (570)
+.+||++|+|+....... .. .....++.+.+++++++|+++++|| +|.....
T Consensus 97 ------~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH-~H~~~~~ 152 (166)
T cd07404 97 ------GKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGH-THFNFDY 152 (166)
T ss_pred ------CCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECC-ccccceE
Confidence 237888898887643221 11 1123456677888899999999999 9976433
No 28
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.41 E-value=6.7e-12 Score=124.06 Aligned_cols=175 Identities=13% Similarity=0.148 Sum_probs=101.6
Q ss_pred CeEEEEEecCCCCCChH-HHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhh
Q 008312 208 PSRIAIVGDVGLTYNTT-STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQP 286 (570)
Q Consensus 208 ~~rf~vigD~g~~~~~~-~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~ 286 (570)
+.||++++|+|.....- ..++.+.+.++|+||++||+++. |. ..+.+.++++.
T Consensus 4 ~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~------g~--------------------~~~~~~~~l~~ 57 (224)
T cd07388 4 VRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPK------AA--------------------KSEDYAAFFRI 57 (224)
T ss_pred eeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCC------CC--------------------CHHHHHHHHHH
Confidence 67999999999753222 23333344689999999999963 11 01223334444
Q ss_pred h-hccCCeEEeccCccccccccchhhh-hhhcccCCCCCCCCCCCcceEEEEe-CeEEEEEeecCcCC--CCCHHHH---
Q 008312 287 V-LSKVPIMVVEGNHEYEEQAENRTFV-AYTSRFAFPSKESGSLSKFYYSFNA-GGIHFLMLAAYVSF--DKSGDQY--- 358 (570)
Q Consensus 287 l-~~~iP~~~v~GNHD~~~~~~~~~~~-~y~~~f~~P~~~~~~~~~~yYSf~~-G~v~fI~Ldt~~~~--~~~~~Q~--- 358 (570)
+ ...+|+++++||||... . ..+. .|...-.+|..- .....+ ..+ |++.|+.|+....+ ..+.+|.
T Consensus 58 l~~l~~pv~~V~GNhD~~v--~-~~l~~~~~~~~~~p~~~--~lh~~~--~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~ 130 (224)
T cd07388 58 LGEAHLPTFYVPGPQDAPL--W-EYLREAYNAELVHPEIR--NVHETF--AFWRGPYLVAGVGGEIADEGEPEEHEALRY 130 (224)
T ss_pred HHhcCCceEEEcCCCChHH--H-HHHHHHhcccccCccce--ecCCCe--EEecCCeEEEEecCCcCCCCCcCHHHHhhh
Confidence 4 22589999999999630 0 0011 111111112210 011112 334 56999999875433 2344542
Q ss_pred -HHHHH-HHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEccccc
Q 008312 359 -KWLEE-DLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVH 421 (570)
Q Consensus 359 -~WLe~-~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H 421 (570)
.||.+ .|+...+...+..|+++|+|+|.....|.+ ...+..++++++..+++||| +|
T Consensus 131 ~~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~g~~h~G-----S~alr~~I~~~~P~l~i~GH-ih 189 (224)
T cd07388 131 PAWVAEYRLKALWELKDYRKVFLFHTPPYHKGLNEQG-----SHEVAHLIKTHNPLVVLVGG-KG 189 (224)
T ss_pred hhhHHHHHHHHHHhCCCCCeEEEECCCCCCCCCCccC-----HHHHHHHHHHhCCCEEEEcC-Cc
Confidence 56433 222221112345899999999987433433 25677899999999999999 99
No 29
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.38 E-value=4.1e-12 Score=124.91 Aligned_cols=185 Identities=15% Similarity=0.162 Sum_probs=105.1
Q ss_pred EEEEEecCCCCCCh----------------HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccch
Q 008312 210 RIAIVGDVGLTYNT----------------TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETY 273 (570)
Q Consensus 210 rf~vigD~g~~~~~----------------~~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y 273 (570)
||++++|+|.+... ..+++.+.+.+||+||++||++.... ..
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~----~~------------------ 58 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNN----PS------------------ 58 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCC----CC------------------
Confidence 68999999987421 22344445679999999999985321 00
Q ss_pred HHHHHHHHHhhhhhh-ccCCeEEeccCccccccccchhhhhhhcccCCCCC--CCCCCCcceEEEEeCeEEEEEeecCcC
Q 008312 274 QPRWDYWGRYMQPVL-SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSK--ESGSLSKFYYSFNAGGIHFLMLAAYVS 350 (570)
Q Consensus 274 ~~~wd~~~~~l~~l~-~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~--~~~~~~~~yYSf~~G~v~fI~Ldt~~~ 350 (570)
...+..+.+.++.+. ..+|+++++||||....... .........+... ...........++.+++.|+.++....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~v~~~~GNHD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~ 136 (223)
T cd00840 59 PEALELLIEALRRLKEAGIPVFIIAGNHDSPSRLGA--LSPLLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRR 136 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecCCCCCcccccc--ccchHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCH
Confidence 123455666666654 47999999999998753221 1111100000000 000011223334455688888875421
Q ss_pred CCCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeee
Q 008312 351 FDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERS 426 (570)
Q Consensus 351 ~~~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~ 426 (570)
. ....+.+++++.+.... .....|++.|.|+.......... .......+...++|++++|| .|..+..
T Consensus 137 ~-~~~~~~~~~~~~~~~~~--~~~~~Il~~H~~~~~~~~~~~~~----~~~~~~~~~~~~~d~v~~GH-~H~~~~~ 204 (223)
T cd00840 137 S-RLRDLLADAELRPRPLD--PDDFNILLLHGGVAGAGPSDSER----APFVPEALLPAGFDYVALGH-IHRPQII 204 (223)
T ss_pred H-HHHHHHHHHHHHhhccC--CCCcEEEEEeeeeecCCCCcccc----cccCcHhhcCcCCCEEECCC-cccCeee
Confidence 1 12334445555555543 34568999999986543221110 12333456678899999999 9987653
No 30
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.35 E-value=1.8e-11 Score=125.04 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=96.1
Q ss_pred CeEEEEEecCCCCCC-----hHHHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHH
Q 008312 208 PSRIAIVGDVGLTYN-----TTSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGR 282 (570)
Q Consensus 208 ~~rf~vigD~g~~~~-----~~~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~ 282 (570)
++||++++|+|.... ....++.+.+.+||+|+++||+++.+ . ...++.+.+
T Consensus 49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~------~------------------~~~~~~~~~ 104 (271)
T PRK11340 49 PFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFD------M------------------PLNFSAFSD 104 (271)
T ss_pred CcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCC------c------------------cccHHHHHH
Confidence 699999999998632 12345556667999999999998521 0 012345666
Q ss_pred hhhhhhccCCeEEeccCcccccccc-chhhhhhhcccCCCCCCCCCCCcceEEEEeCe--EEEEEeecCcCCCCCHHHHH
Q 008312 283 YMQPVLSKVPIMVVEGNHEYEEQAE-NRTFVAYTSRFAFPSKESGSLSKFYYSFNAGG--IHFLMLAAYVSFDKSGDQYK 359 (570)
Q Consensus 283 ~l~~l~~~iP~~~v~GNHD~~~~~~-~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~--v~fI~Ldt~~~~~~~~~Q~~ 359 (570)
.++.+....|+++|+||||+..... .+.+......-.+ .-..+....+..++ +.++.++-... +...
T Consensus 105 ~L~~L~~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi-----~lL~n~~~~i~~~~~~i~i~G~~d~~~---~~~~-- 174 (271)
T PRK11340 105 VLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSAGI-----TVLFNQATVIATPNRQFELVGTGDLWA---GQCK-- 174 (271)
T ss_pred HHHHHhhcCCEEEecCCCCcccCccchHHHHHHHHhcCc-----EEeeCCeEEEeeCCcEEEEEEecchhc---cCCC--
Confidence 7777766789999999999853211 0111111111110 01123344455443 56666653211 1100
Q ss_pred HHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeeeecc
Q 008312 360 WLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERSNRV 429 (570)
Q Consensus 360 WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~pv 429 (570)
..+.+++ +. ..|++.|.|-+- +.+.+.++||+|||| +|.-|-..|.
T Consensus 175 -~~~~~~~----~~-~~IlL~H~P~~~-----------------~~~~~~~~dL~lsGH-THGGQi~lP~ 220 (271)
T PRK11340 175 -PPPASEA----NL-PRLVLAHNPDSK-----------------EVMRDEPWDLMLCGH-THGGQLRVPL 220 (271)
T ss_pred -hhHhcCC----CC-CeEEEEcCCChh-----------------HhhccCCCCEEEecc-ccCCeEEccc
Confidence 1112222 22 478889999542 123457899999999 9998876554
No 31
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.34 E-value=1.9e-11 Score=129.70 Aligned_cols=93 Identities=18% Similarity=0.268 Sum_probs=66.3
Q ss_pred CcceEEEE-eCeE--EEEEeecCcC---------C--CCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCc---
Q 008312 329 SKFYYSFN-AGGI--HFLMLAAYVS---------F--DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAH--- 391 (570)
Q Consensus 329 ~~~yYSf~-~G~v--~fI~Ldt~~~---------~--~~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~--- 391 (570)
+..||+|+ .|++ |||+||+-.. + ..+.+|++||+++|+.+.. +.+++|+++|+|+.+.....
T Consensus 291 G~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a-~~p~VVV~hHpPi~t~gi~~md~ 369 (492)
T TIGR03768 291 DFACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQA-DGQLMIIAAHIPIAVSPIGSEME 369 (492)
T ss_pred CcceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcC-CCceEEEEeCCCcccCCccchhh
Confidence 34599999 5855 9999998531 1 1358999999999998753 45789999999987622111
Q ss_pred cc----------chHHHHHHHHHHHHHc-CCeEEEEcccccce
Q 008312 392 YR----------EAECMRVAMEDLLYKY-GVDVVFNGHQVHAY 423 (570)
Q Consensus 392 ~~----------~~~~~r~~l~~ll~~y-~VdlvlsGH~~H~Y 423 (570)
+. .......+|..+|.+| +|.++|||| .|.-
T Consensus 370 w~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGH-vHrn 411 (492)
T TIGR03768 370 WWLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGH-RHLN 411 (492)
T ss_pred hccccccccccccccccHHHHHHHHhcCCCeEEEEcCC-cccc
Confidence 00 0011124799999999 599999999 9953
No 32
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.34 E-value=1.9e-10 Score=116.75 Aligned_cols=210 Identities=22% Similarity=0.346 Sum_probs=115.8
Q ss_pred CCeEEEEEecCCCCCC--------------------hHHHHHHHH-hCCCCEEEEcCCcccccccccCCCCCCcccccCC
Q 008312 207 YPSRIAIVGDVGLTYN--------------------TTSTVSHMI-SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFA 265 (570)
Q Consensus 207 ~~~rf~vigD~g~~~~--------------------~~~~i~~l~-~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~ 265 (570)
.+|||+.++|+|.+.. +...+++++ .++||||+++||++++...
T Consensus 52 g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t--------------- 116 (379)
T KOG1432|consen 52 GTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHST--------------- 116 (379)
T ss_pred CceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCccccccc---------------
Confidence 3799999999998632 233466665 4699999999999975210
Q ss_pred CCCcccchHHHHHHHHHhhhhh-hccCCeEEeccCccccccccchhhhhhhcccCCCCCCC--C-CCCcceEEEEeCe--
Q 008312 266 NSPIHETYQPRWDYWGRYMQPV-LSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKES--G-SLSKFYYSFNAGG-- 339 (570)
Q Consensus 266 ~~~~~e~Y~~~wd~~~~~l~~l-~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~--~-~~~~~yYSf~~G~-- 339 (570)
..++ .-++..++|. ..+|||.+++||||-+..........+... +|..-+ . ..+..+--..+|+
T Consensus 117 -----~Da~---~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~--lP~s~~~v~p~dg~~~~~~g~gnyn 186 (379)
T KOG1432|consen 117 -----QDAA---TSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRLQLMKFISK--LPYSLSQVNPPDGHMYIIDGFGNYN 186 (379)
T ss_pred -----HhHH---HHHHHHhhhHhhcCCCeEEEecccccccccCHHHHHHHHhc--CCCccccCCCcccceeeeecccceE
Confidence 0111 3355666665 678999999999998765433322223221 222100 0 0011110111111
Q ss_pred ----------------EEEEEeecCcC---------CC-CCHHHHHHHHHHHhcc---ccCCCC-EEEEEeCCCcc--cc
Q 008312 340 ----------------IHFLMLAAYVS---------FD-KSGDQYKWLEEDLANV---EREVTP-WLVATWHAPWY--ST 387 (570)
Q Consensus 340 ----------------v~fI~Ldt~~~---------~~-~~~~Q~~WLe~~L~~~---~r~~~p-wiIV~~H~P~y--~s 387 (570)
..+++||+..+ |+ ....|.+||+..-.+- +..-.| --++++|.|+- ..
T Consensus 187 ~~i~~~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~ 266 (379)
T KOG1432|consen 187 LQIEGAIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLE 266 (379)
T ss_pred EEeccCCCcccccCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhh
Confidence 23455555321 11 2478999999887331 111122 35778899863 21
Q ss_pred CCC------cccch---HHHHHHHHHHHH-HcCCeEEEEcccccceeeeeccccCccCCCCcEEEEECCCCc
Q 008312 388 YKA------HYREA---ECMRVAMEDLLY-KYGVDVVFNGHQVHAYERSNRVYNYTLDPCGPVHITVGDGGN 449 (570)
Q Consensus 388 ~~~------~~~~~---~~~r~~l~~ll~-~y~VdlvlsGH~~H~YeR~~pv~n~~~~~~g~vyiv~G~gG~ 449 (570)
-.. ..++. ......+...|. ..+|++|++|| +|...--.+ -.+.+++.=|+|+.
T Consensus 267 ~~~~tp~~g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GH-dHvNDfC~~-------~k~~~wlCygGgaG 330 (379)
T KOG1432|consen 267 LESKTPLIGVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGH-DHVNDFCGE-------LKGELWLCYGGGAG 330 (379)
T ss_pred ccCCCcccceeeccccccccccHHHHHHHhccCcceEEecc-ccccceecc-------cCCeEEEEecCCCc
Confidence 111 11111 111234555665 77899999999 998654332 23446665555544
No 33
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.27 E-value=4.7e-11 Score=105.68 Aligned_cols=116 Identities=29% Similarity=0.500 Sum_probs=81.9
Q ss_pred EEEecCCCCCChHHHH---HHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhhhh
Q 008312 212 AIVGDVGLTYNTTSTV---SHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVL 288 (570)
Q Consensus 212 ~vigD~g~~~~~~~~i---~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~ 288 (570)
+++||+|......... ....+.++|+||++||+++.. .. ..+..+........
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~------~~------------------~~~~~~~~~~~~~~ 56 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDG------PD------------------PEEVLAAALALLLL 56 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCC------CC------------------chHHHHHHHHHhhc
Confidence 4689999885544332 344457999999999999742 10 11222222333346
Q ss_pred ccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcCCCCCHHHHHHHHHHHhcc
Q 008312 289 SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLEEDLANV 368 (570)
Q Consensus 289 ~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~~~~~~Q~~WLe~~L~~~ 368 (570)
...|+++++||||
T Consensus 57 ~~~~~~~~~GNHD------------------------------------------------------------------- 69 (131)
T cd00838 57 LGIPVYVVPGNHD------------------------------------------------------------------- 69 (131)
T ss_pred CCCCEEEeCCCce-------------------------------------------------------------------
Confidence 7899999999999
Q ss_pred ccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeeee
Q 008312 369 EREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERSN 427 (570)
Q Consensus 369 ~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~ 427 (570)
|++.|.|++.............+..+..++.+++++++|+|| .|.+.+..
T Consensus 70 --------i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH-~H~~~~~~ 119 (131)
T cd00838 70 --------ILLTHGPPYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGH-THVYERRE 119 (131)
T ss_pred --------EEEeccCCCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCC-eecccccc
Confidence 888899988754322222222578888999999999999999 99999875
No 34
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=99.19 E-value=3e-10 Score=112.65 Aligned_cols=177 Identities=20% Similarity=0.209 Sum_probs=109.8
Q ss_pred EEEEEecCCCCCChHHHHHHHH----hCCCCEEEEcCCcccccccccCCCCCCccc---ccCCCCCcccchHHHHHHHH-
Q 008312 210 RIAIVGDVGLTYNTTSTVSHMI----SNRPDLILLVGDVTYANLYLTNGTGSDCYA---CSFANSPIHETYQPRWDYWG- 281 (570)
Q Consensus 210 rf~vigD~g~~~~~~~~i~~l~----~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~---~~~~~~~~~e~Y~~~wd~~~- 281 (570)
||++.+|.+...........+. +.+|||+|++||.+|++.......... .. .........+.|..++..+.
T Consensus 1 r~a~~SC~~~~~~~~~~~~~~~~~~~~~~~d~~l~~GD~IY~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~Y~~~~~ 79 (228)
T cd07389 1 RFAFGSCNKYESGYFNAYRALAYDHSEEDPDLFLHLGDQIYADDVGGLMPALI-EGRPLEPAHEALTLEEYRERYRQYRS 79 (228)
T ss_pred CEEEEECCCCCCCCcHHHHHHhhhccccCCCEEEEcCCeecccCCCccccccc-CCcCcCCcccccCHHHHHHHHHHHcC
Confidence 5888888887765555555554 679999999999999974211000000 00 00001223345555555543
Q ss_pred -HhhhhhhccCCeEEeccCccccccccc----------------hhhhhhhcccCCCCCCCC--CCCcceEEEEeCeE-E
Q 008312 282 -RYMQPVLSKVPIMVVEGNHEYEEQAEN----------------RTFVAYTSRFAFPSKESG--SLSKFYYSFNAGGI-H 341 (570)
Q Consensus 282 -~~l~~l~~~iP~~~v~GNHD~~~~~~~----------------~~~~~y~~~f~~P~~~~~--~~~~~yYSf~~G~v-~ 341 (570)
..++.+.+.+|++.++++||+.++.+. ....+|......+..... .....|++|.+|.. .
T Consensus 80 ~p~~~~~~~~~p~~~iwDDHDi~~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~ 159 (228)
T cd07389 80 DPDLQRLLAQVPTIGIWDDHDIGDNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVD 159 (228)
T ss_pred CHHHHHHhhcCCEEEeccccccccccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcce
Confidence 235677888999999999999876543 122344444443333222 34678999999996 9
Q ss_pred EEEeecCcCCCCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcC--CeEEEEccc
Q 008312 342 FLMLAAYVSFDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYG--VDVVFNGHQ 419 (570)
Q Consensus 342 fI~Ldt~~~~~~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~--VdlvlsGH~ 419 (570)
||+||+.... ..+.....-|+++..++.+.+ --++|+|+
T Consensus 160 ~~~lD~R~~R--------------------------------------d~W~~~~~er~~l~~~~~~~~~~~vv~lSGD- 200 (228)
T cd07389 160 LILLDTRTYR--------------------------------------DSWDGYPAERERLLDLLAKRKIKNVVFLSGD- 200 (228)
T ss_pred EEEEeccccc--------------------------------------ccccccHHHHHHHHHHHHHhCCCCeEEEecH-
Confidence 9999998542 122223345677777765554 34899999
Q ss_pred ccceeee
Q 008312 420 VHAYERS 426 (570)
Q Consensus 420 ~H~YeR~ 426 (570)
+|..+-.
T Consensus 201 vH~~~~~ 207 (228)
T cd07389 201 VHLAEAS 207 (228)
T ss_pred HHHHHHh
Confidence 9975544
No 35
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.10 E-value=2.9e-09 Score=105.86 Aligned_cols=194 Identities=19% Similarity=0.233 Sum_probs=98.8
Q ss_pred eEEEEEecCCCCCChHHHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhhhh
Q 008312 209 SRIAIVGDVGLTYNTTSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVL 288 (570)
Q Consensus 209 ~rf~vigD~g~~~~~~~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~ 288 (570)
+||+++||+|..... ..++.+.+.+||+|+++||++... ..+.+.+..+
T Consensus 1 ~rIa~isDiHg~~~~-~~~~~l~~~~pD~Vl~~GDi~~~~-----------------------------~~~~~~l~~l- 49 (238)
T cd07397 1 LRIAIVGDVHGQWDL-EDIKALHLLQPDLVLFVGDFGNES-----------------------------VQLVRAISSL- 49 (238)
T ss_pred CEEEEEecCCCCchH-HHHHHHhccCCCEEEECCCCCcCh-----------------------------HHHHHHHHhC-
Confidence 589999999976443 234455567899999999998320 1122233332
Q ss_pred ccCCeEEeccCccccccccc-hhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCc-----C-----------C
Q 008312 289 SKVPIMVVEGNHEYEEQAEN-RTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYV-----S-----------F 351 (570)
Q Consensus 289 ~~iP~~~v~GNHD~~~~~~~-~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~-----~-----------~ 351 (570)
..|+++++||||....... ..+..+......-.. ..-.|=..++....+.++.+.. . |
T Consensus 50 -~~p~~~V~GNHD~~~~~~~~~k~~~l~~~L~~lg~----~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~f 124 (238)
T cd07397 50 -PLPKAVILGNHDAWYDATFRKKGDRVQEQLELLGD----LHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVY 124 (238)
T ss_pred -CCCeEEEcCCCcccccccccchHHHHHHHHHHhCC----cEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHh
Confidence 4789999999998653211 012223322211110 0000111122222233333321 0 1
Q ss_pred --CCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCC--------------CcccchHHHHHHHHHHHHHcCCeEEE
Q 008312 352 --DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYK--------------AHYREAECMRVAMEDLLYKYGVDVVF 415 (570)
Q Consensus 352 --~~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~--------------~~~~~~~~~r~~l~~ll~~y~Vdlvl 415 (570)
..-.+-.+.+-+.++.++... + .|++.|.++....+ .++ ....+++++..+-..-.+++++
T Consensus 125 gi~s~~eA~~~ive~~~~~~~~~-~-~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~-G~~~l~~ai~~~~~~~~~~l~~ 201 (238)
T cd07397 125 GVISLEESAQRIIAAAKKAPPDL-P-LILLAHNGPSGLGSDAEDPCGRDWKPPGGDW-GDPDLALAISQIQQGRQVPLVV 201 (238)
T ss_pred CCCCHHHHHHHHHHHhhhcCCCC-C-eEEEeCcCCcCCCcccccccccccCCcCCCC-CCHHHHHHHHHHhccCCCCEEE
Confidence 011233344444443333222 2 67788998875431 111 2345666676555444589999
Q ss_pred Ecccccce-eeeecccc-CccCCCCcEEE
Q 008312 416 NGHQVHAY-ERSNRVYN-YTLDPCGPVHI 442 (570)
Q Consensus 416 sGH~~H~Y-eR~~pv~n-~~~~~~g~vyi 442 (570)
+|| .|.- .+...+.. ...+..|++|+
T Consensus 202 fGH-~H~~l~~~~~~r~~~~~~~~gt~y~ 229 (238)
T cd07397 202 FGH-MHHRLRRGKGLRNMIAVDREGTVYL 229 (238)
T ss_pred eCC-ccCcccccccccceeeecCCCeEEE
Confidence 999 7643 22221111 12356899998
No 36
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.07 E-value=9.1e-10 Score=100.37 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=73.7
Q ss_pred EEEEEecCCCCCChHHHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhhhhc
Q 008312 210 RIAIVGDVGLTYNTTSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLS 289 (570)
Q Consensus 210 rf~vigD~g~~~~~~~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~ 289 (570)
||+++||+|.... .+...++|+||++||++.. +. ..+++.+.+.++.+.
T Consensus 1 ~i~~isD~H~~~~------~~~~~~~D~vi~~GD~~~~------~~------------------~~~~~~~~~~l~~~~- 49 (135)
T cd07379 1 RFVCISDTHSRHR------TISIPDGDVLIHAGDLTER------GT------------------LEELQKFLDWLKSLP- 49 (135)
T ss_pred CEEEEeCCCCCCC------cCcCCCCCEEEECCCCCCC------CC------------------HHHHHHHHHHHHhCC-
Confidence 5899999997644 2334589999999999853 11 122334445554432
Q ss_pred cCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcCCCCCHHHHHHHHHHHhccc
Q 008312 290 KVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLEEDLANVE 369 (570)
Q Consensus 290 ~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~~~~~~Q~~WLe~~L~~~~ 369 (570)
..++++++||||....
T Consensus 50 ~~~~~~v~GNHD~~~~---------------------------------------------------------------- 65 (135)
T cd07379 50 HPHKIVIAGNHDLTLD---------------------------------------------------------------- 65 (135)
T ss_pred CCeEEEEECCCCCcCC----------------------------------------------------------------
Confidence 1235789999996310
Q ss_pred cCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEccccccee
Q 008312 370 REVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYE 424 (570)
Q Consensus 370 r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~Ye 424 (570)
.. .+.|++.|.|++............-.+.+.+++.+++++++|+|| +|...
T Consensus 66 ~~--~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~GH-~H~~~ 117 (135)
T cd07379 66 PE--DTDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFGH-IHEGY 117 (135)
T ss_pred CC--CCEEEEECCCCCcCccccccCcccCCHHHHHHHHHHCCcEEEEcC-cCCcC
Confidence 11 236778899987653221110111124566778899999999999 99764
No 37
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.07 E-value=4.8e-10 Score=103.74 Aligned_cols=138 Identities=21% Similarity=0.359 Sum_probs=80.6
Q ss_pred eEEEEEecCCCCCCh-HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhhh
Q 008312 209 SRIAIVGDVGLTYNT-TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPV 287 (570)
Q Consensus 209 ~rf~vigD~g~~~~~-~~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~l 287 (570)
+||+++||+|..... .+.++.+ +++|+|+++||++.. .++.+.++.+
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~------------------------------~~~~~~~~~~ 48 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP------------------------------EEVLELLRDI 48 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH------------------------------HHHHHHHHHH
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH------------------------------HHHHHHHhcC
Confidence 699999999986432 2345544 579999999999831 2233334333
Q ss_pred hccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcCCCCCHHHHHHHHHHHhc
Q 008312 288 LSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLEEDLAN 367 (570)
Q Consensus 288 ~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~~~~~~Q~~WLe~~L~~ 367 (570)
|++++.||||... +...... . + +. ..
T Consensus 49 ----~~~~v~GNHD~~~---------~~~~~~~---------~-~----------------------------~~---~~ 74 (156)
T PF12850_consen 49 ----PVYVVRGNHDNWA---------FPNENDE---------E-Y----------------------------LL---DA 74 (156)
T ss_dssp ----EEEEE--CCHSTH---------HHSEECT---------C-S----------------------------SH---SE
T ss_pred ----CEEEEeCCccccc---------chhhhhc---------c-c----------------------------cc---cc
Confidence 8999999999631 1111100 0 0 00 00
Q ss_pred cccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeeeeccccCccCCCCcEEEEECCC
Q 008312 368 VEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERSNRVYNYTLDPCGPVHITVGDG 447 (570)
Q Consensus 368 ~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~pv~n~~~~~~g~vyiv~G~g 447 (570)
....-..+.|++.|...+.... ..+.+..++...+++++|+|| .|..+... .+++.++..|+-
T Consensus 75 ~~~~~~~~~i~~~H~~~~~~~~--------~~~~~~~~~~~~~~~~~~~GH-~H~~~~~~--------~~~~~~~~~Gs~ 137 (156)
T PF12850_consen 75 LRLTIDGFKILLSHGHPYDVQW--------DPAELREILSRENVDLVLHGH-THRPQVFK--------IGGIHVINPGSI 137 (156)
T ss_dssp EEEEETTEEEEEESSTSSSSTT--------THHHHHHHHHHTTSSEEEESS-SSSEEEEE--------ETTEEEEEE-GS
T ss_pred eeeeecCCeEEEECCCCccccc--------ChhhhhhhhcccCCCEEEcCC-cccceEEE--------ECCEEEEECCcC
Confidence 0001123578888877665321 123456788899999999999 99877764 357778877776
Q ss_pred Cc
Q 008312 448 GN 449 (570)
Q Consensus 448 G~ 449 (570)
+.
T Consensus 138 ~~ 139 (156)
T PF12850_consen 138 GG 139 (156)
T ss_dssp SS
T ss_pred CC
Confidence 55
No 38
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.02 E-value=3.9e-09 Score=108.11 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=57.4
Q ss_pred CeEEEEEecCCCCCCh---HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhh
Q 008312 208 PSRIAIVGDVGLTYNT---TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYM 284 (570)
Q Consensus 208 ~~rf~vigD~g~~~~~---~~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l 284 (570)
+++|+.++|+|..... .+.+.++.+..||+|+++||++..+. . +.+..+.+.+
T Consensus 44 ~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~~~-----~-------------------~~~~~~~~~L 99 (284)
T COG1408 44 GLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDGDR-----P-------------------PGVAALALFL 99 (284)
T ss_pred CeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecCCC-----C-------------------CCHHHHHHHH
Confidence 6899999999987554 23445555678899999999996310 0 2346677888
Q ss_pred hhhhccCCeEEeccCccccccc
Q 008312 285 QPVLSKVPIMVVEGNHEYEEQA 306 (570)
Q Consensus 285 ~~l~~~iP~~~v~GNHD~~~~~ 306 (570)
+++.+..+++++.||||+....
T Consensus 100 ~~L~~~~gv~av~GNHd~~~~~ 121 (284)
T COG1408 100 AKLKAPLGVFAVLGNHDYGVDR 121 (284)
T ss_pred HhhhccCCEEEEeccccccccc
Confidence 8999999999999999997543
No 39
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.00 E-value=3.6e-09 Score=106.15 Aligned_cols=198 Identities=17% Similarity=0.216 Sum_probs=106.3
Q ss_pred eEEEEEecCCCCCChHH----HHHHHH--hCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHH
Q 008312 209 SRIAIVGDVGLTYNTTS----TVSHMI--SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGR 282 (570)
Q Consensus 209 ~rf~vigD~g~~~~~~~----~i~~l~--~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~ 282 (570)
+|+++++|+|.+..... .++.+. +.+||+|+++||++.. + .|.. .. .+......+
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~--~--~g~~-----------~~----~~~~~~~~~ 61 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEA--W--IGDD-----------DP----SPFAREIAA 61 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceecc--c--cccC-----------cC----CHHHHHHHH
Confidence 47999999998754322 233332 3589999999999953 1 1110 00 011233445
Q ss_pred hhhhhhcc-CCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcCCCCCHHHHHHH
Q 008312 283 YMQPVLSK-VPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWL 361 (570)
Q Consensus 283 ~l~~l~~~-iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~~~~~~Q~~WL 361 (570)
.++.+... +|++.++||||.... ..+.....+.. -.....+++++.++++.-... +...+..|+++
T Consensus 62 ~l~~l~~~g~~v~~v~GNHD~~~~------~~~~~~~g~~~------l~~~~~~~~~g~~i~l~HGd~-~~~~d~~y~~~ 128 (241)
T PRK05340 62 ALKALSDSGVPCYFMHGNRDFLLG------KRFAKAAGMTL------LPDPSVIDLYGQRVLLLHGDT-LCTDDKAYQRF 128 (241)
T ss_pred HHHHHHHcCCeEEEEeCCCchhhh------HHHHHhCCCEE------eCCcEEEEECCEEEEEECCcc-cccCCHHHHHH
Confidence 55666433 899999999997421 11222221100 111334677787777775432 12234566666
Q ss_pred HHHHhccccCCCCEEEEEeCCCccccCCC-------------cccc---hHHHHHHHHHHHHHcCCeEEEEcccccceee
Q 008312 362 EEDLANVEREVTPWLVATWHAPWYSTYKA-------------HYRE---AECMRVAMEDLLYKYGVDVVFNGHQVHAYER 425 (570)
Q Consensus 362 e~~L~~~~r~~~pwiIV~~H~P~y~s~~~-------------~~~~---~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR 425 (570)
.+.+.+. |.+..+|.+++..... .... .....+++.+++.+++++++++|| .|.-..
T Consensus 129 r~~~r~~------~~~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH-~H~~~~ 201 (241)
T PRK05340 129 RRKVRNP------WLQWLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGH-THRPAI 201 (241)
T ss_pred HHHHhCH------HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECc-ccCcce
Confidence 6655431 2233333333321000 0000 000125677899999999999999 997654
Q ss_pred eeccccCccCCCCcEEEEECCCCc
Q 008312 426 SNRVYNYTLDPCGPVHITVGDGGN 449 (570)
Q Consensus 426 ~~pv~n~~~~~~g~vyiv~G~gG~ 449 (570)
.. +.+ +..+..|++-|+...
T Consensus 202 ~~-~~~---~~~~~~~~~lgdw~~ 221 (241)
T PRK05340 202 HQ-LQA---GGQPATRIVLGDWHE 221 (241)
T ss_pred ee-ccC---CCcceEEEEeCCCCC
Confidence 32 111 111236898898843
No 40
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.85 E-value=2.2e-08 Score=93.10 Aligned_cols=57 Identities=21% Similarity=0.145 Sum_probs=37.0
Q ss_pred EEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeeeeccccCccCCCCcEEEEECCCCc
Q 008312 375 WLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERSNRVYNYTLDPCGPVHITVGDGGN 449 (570)
Q Consensus 375 wiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~pv~n~~~~~~g~vyiv~G~gG~ 449 (570)
++|++.|.+....... . + . ..++.+.++|++++|| +|...... .+++.+|..|+.|.
T Consensus 76 ~~i~v~Hg~~~~~~~~----~---~-~-~~~~~~~~~d~vi~GH-tH~~~~~~--------~~~~~~inpGs~~~ 132 (155)
T cd00841 76 KRIFLTHGHLYGVKNG----L---D-R-LYLAKEGGADVVLYGH-THIPVIEK--------IGGVLLLNPGSLSL 132 (155)
T ss_pred EEEEEECCcccccccc----h---h-h-hhhhhhcCCCEEEECc-ccCCccEE--------ECCEEEEeCCCccC
Confidence 3677788776543211 0 1 1 4566778999999999 99765432 24677777777664
No 41
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.85 E-value=1.5e-08 Score=97.64 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=31.9
Q ss_pred EEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeeee
Q 008312 377 VATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERSN 427 (570)
Q Consensus 377 IV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~ 427 (570)
|+++|.|...... ..+..++.+++++++|+|| .|.+.+..
T Consensus 112 i~lsH~P~~~~~~----------~~~~~~~~~~~p~~Ifs~H-~H~s~~~~ 151 (195)
T cd08166 112 IMLSHVPLLAEGG----------QALKHVVTDLDPDLIFSAH-RHKSSIFM 151 (195)
T ss_pred eeeeccccccccc----------HHHHHHHHhcCceEEEEcC-ccceeeEE
Confidence 8889999876421 2566788999999999999 99877653
No 42
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.77 E-value=3.6e-08 Score=92.43 Aligned_cols=51 Identities=24% Similarity=0.490 Sum_probs=32.3
Q ss_pred hCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhhh-h--ccCCeEEeccCcccc
Q 008312 232 SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPV-L--SKVPIMVVEGNHEYE 303 (570)
Q Consensus 232 ~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~l-~--~~iP~~~v~GNHD~~ 303 (570)
+.+||+|+++||++... .. .. ...|..+...+..+ . ..+|++.++||||..
T Consensus 36 ~~~pd~vv~~GDl~~~~------~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 36 LLQPDVVFVLGDLFDEG------KW--------------ST-DEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred hcCCCEEEECCCCCCCC------cc--------------CC-HHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 46899999999999531 10 00 13454433333222 2 258999999999984
No 43
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.77 E-value=8.9e-07 Score=84.84 Aligned_cols=40 Identities=25% Similarity=0.473 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCeEEEEcccccceeeeeccccCccCCCCcEEEEECCCCc
Q 008312 401 AMEDLLYKYGVDVVFNGHQVHAYERSNRVYNYTLDPCGPVHITVGDGGN 449 (570)
Q Consensus 401 ~l~~ll~~y~VdlvlsGH~~H~YeR~~pv~n~~~~~~g~vyiv~G~gG~ 449 (570)
.+..++.+.++|++++|| +|...... .+|..++..|+.|.
T Consensus 97 ~~~~~~~~~~~dvii~GH-TH~p~~~~--------~~g~~viNPGSv~~ 136 (178)
T cd07394 97 SLAALQRQLDVDILISGH-THKFEAFE--------HEGKFFINPGSATG 136 (178)
T ss_pred HHHHHHHhcCCCEEEECC-CCcceEEE--------ECCEEEEECCCCCC
Confidence 344566778899999999 99755432 24677777787764
No 44
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=98.75 E-value=1.6e-07 Score=102.35 Aligned_cols=177 Identities=19% Similarity=0.286 Sum_probs=105.1
Q ss_pred HHHHHHHhC--CCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhhhhccCCeEEeccCccc
Q 008312 225 STVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEY 302 (570)
Q Consensus 225 ~~i~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~iP~~~v~GNHD~ 302 (570)
+++++|.++ ++|||+++||++-.+.+. ...+.--.......+.|.+....+|++++.||||.
T Consensus 199 s~L~~ike~~~~iD~I~wTGD~~~H~~w~----------------~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~ 262 (577)
T KOG3770|consen 199 SALDHIKENHKDIDYIIWTGDNVAHDVWA----------------QTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEI 262 (577)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCcccchh----------------hhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCC
Confidence 356666654 489999999999654320 01111111223344556667789999999999999
Q ss_pred ccccc-------ch-----hhhhhhccc--CCCCCC-CCCCCcceEEEE-eCeEEEEEeecCcCC----------CCCHH
Q 008312 303 EEQAE-------NR-----TFVAYTSRF--AFPSKE-SGSLSKFYYSFN-AGGIHFLMLAAYVSF----------DKSGD 356 (570)
Q Consensus 303 ~~~~~-------~~-----~~~~y~~~f--~~P~~~-~~~~~~~yYSf~-~G~v~fI~Ldt~~~~----------~~~~~ 356 (570)
..... .. .|.++...| .+|.+. .....+.||.-. .+|.++|+||+..-+ .....
T Consensus 263 ~P~N~F~~~~~~~~~~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~ 342 (577)
T KOG3770|consen 263 HPVNLFAPGSVPKRHSQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPID 342 (577)
T ss_pred CcHhhcCCCCCcchhhhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchH
Confidence 74310 01 112222222 244431 122344566544 689999999985322 23578
Q ss_pred HHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcC--CeEEEEccccccee
Q 008312 357 QYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYG--VDVVFNGHQVHAYE 424 (570)
Q Consensus 357 Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~--VdlvlsGH~~H~Ye 424 (570)
|++|+..+|.++..++.+ +=+++|.|+-... ..+.....+-.++.++. +...|.|| .|.-+
T Consensus 343 ~lqWf~~~L~~ae~~Gek-Vhil~HIPpG~~~-----c~~~ws~~f~~iv~r~~~tI~gqf~GH-~h~d~ 405 (577)
T KOG3770|consen 343 QLQWFVDQLQEAESAGEK-VHILGHIPPGDGV-----CLEGWSINFYRIVNRFRSTIAGQFYGH-THIDE 405 (577)
T ss_pred HhhHHHHHHHHHHhcCCE-EEEEEeeCCCCcc-----hhhhhhHHHHHHHHHHHHhhhhhcccc-Cccee
Confidence 899999999987655444 4556799975421 11122344555666654 55679999 99755
No 45
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.74 E-value=4e-08 Score=89.07 Aligned_cols=49 Identities=18% Similarity=0.086 Sum_probs=31.7
Q ss_pred EEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeee
Q 008312 376 LVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERS 426 (570)
Q Consensus 376 iIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~ 426 (570)
.|+++|+|++....... ....-.+.+.+++.+++++++|+|| +|.....
T Consensus 58 ~Ilv~H~pp~~~~~~~~-~~~~g~~~l~~~l~~~~~~~vl~GH-~H~~~~~ 106 (129)
T cd07403 58 DILLTHAPPAGIGDGED-FAHRGFEAFLDFIDRFRPKLFIHGH-THLNYGY 106 (129)
T ss_pred CEEEECCCCCcCcCccc-ccccCHHHHHHHHHHHCCcEEEEcC-cCCCcCc
Confidence 47777888764322110 0001245777888899999999999 9965443
No 46
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.72 E-value=1.4e-07 Score=88.23 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=27.3
Q ss_pred eEEEEEecCCCCCChHHH-HHHHHhC-CCCEEEEcCCcc
Q 008312 209 SRIAIVGDVGLTYNTTST-VSHMISN-RPDLILLVGDVT 245 (570)
Q Consensus 209 ~rf~vigD~g~~~~~~~~-i~~l~~~-~pDfvl~~GDl~ 245 (570)
+||+++||+|........ ++.+... ++|.|+++||++
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~ 39 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT 39 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC
Confidence 589999999976543333 3334445 799999999997
No 47
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.70 E-value=1.3e-07 Score=90.00 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=26.1
Q ss_pred EEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeeee
Q 008312 377 VATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERSN 427 (570)
Q Consensus 377 IV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~ 427 (570)
|++.|.|.+. ++.+.+++++|+|| .|-+-+..
T Consensus 119 i~l~H~p~~~------------------~~~~~~~~~~lsGH-~H~~~~~~ 150 (171)
T cd07384 119 ILLTHIPLYR------------------LLDTIKPVLILSGH-DHDQCEVV 150 (171)
T ss_pred eeEECCccHH------------------HHhccCceEEEeCc-ccCCeEEE
Confidence 8889999632 66778999999999 99886654
No 48
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.69 E-value=6.1e-07 Score=89.53 Aligned_cols=73 Identities=16% Similarity=0.310 Sum_probs=45.9
Q ss_pred EEEecCCCCCCh----HHHHHHHHh--CCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhh
Q 008312 212 AIVGDVGLTYNT----TSTVSHMIS--NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQ 285 (570)
Q Consensus 212 ~vigD~g~~~~~----~~~i~~l~~--~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~ 285 (570)
++++|+|.+... ...++.+.+ .+||+|+++||++.. +. |.. .. ....+.+.+.++
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~--~~--~~~-----------~~----~~~~~~~~~~l~ 62 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEA--WI--GDD-----------DP----STLARSVAQAIR 62 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceecc--cc--CCC-----------CC----CHHHHHHHHHHH
Confidence 689999987542 234444543 379999999999952 11 110 00 011234455566
Q ss_pred hhhc-cCCeEEeccCcccc
Q 008312 286 PVLS-KVPIMVVEGNHEYE 303 (570)
Q Consensus 286 ~l~~-~iP~~~v~GNHD~~ 303 (570)
.+.. .+|+++++||||..
T Consensus 63 ~L~~~~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 63 QVSDQGVPCYFMHGNRDFL 81 (231)
T ss_pred HHHHCCCeEEEEcCCCchh
Confidence 6643 58999999999985
No 49
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.67 E-value=2.1e-07 Score=90.28 Aligned_cols=193 Identities=22% Similarity=0.310 Sum_probs=88.1
Q ss_pred CeEEEEEecCCCCCCh-HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCCccc-----ccCCCC-Ccc--cchHHH-H
Q 008312 208 PSRIAIVGDVGLTYNT-TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYA-----CSFANS-PIH--ETYQPR-W 277 (570)
Q Consensus 208 ~~rf~vigD~g~~~~~-~~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~-----~~~~~~-~~~--e~Y~~~-w 277 (570)
+-++++++|.+..... .+.++.+....||.|+++||+.-+. ...+.|. ...|+. .+. +.|+.+ .
T Consensus 5 ~~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~------a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~ 78 (255)
T PF14582_consen 5 VRKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAE------ARSDEYERAQEEQREPDKSEINEEECYDSEAL 78 (255)
T ss_dssp --EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TC------HHHHHHHHHHHTT----THHHHHHHHHHHHHH
T ss_pred chhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccc------hhhhHHHHHhhhccCcchhhhhhhhhhhHHHH
Confidence 4589999998764322 2334444456999999999997431 1111110 001110 011 111111 2
Q ss_pred HHHHHhhhhhhccCCeEEeccCccccccccchhh--hhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCc-CCCC-
Q 008312 278 DYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTF--VAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYV-SFDK- 353 (570)
Q Consensus 278 d~~~~~l~~l~~~iP~~~v~GNHD~~~~~~~~~~--~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~-~~~~- 353 (570)
+.|.+.+.. ..+|.+++|||||.... .| .+|....-.|.-- .-..-+.+.-|..-|+.+..+. +...
T Consensus 79 ~~ff~~L~~--~~~p~~~vPG~~Dap~~----~~lr~a~~~e~v~p~~~---~vH~sf~~~~g~y~v~G~GGeI~~~~~~ 149 (255)
T PF14582_consen 79 DKFFRILGE--LGVPVFVVPGNMDAPER----FFLREAYNAEIVTPHIH---NVHESFFFWKGEYLVAGMGGEITDDQRE 149 (255)
T ss_dssp HHHHHHHHC--C-SEEEEE--TTS-SHH----HHHHHHHHCCCC-TTEE---E-CTCEEEETTTEEEEEE-SEEESSS-B
T ss_pred HHHHHHHHh--cCCcEEEecCCCCchHH----HHHHHHhccceecccee---eeeeeecccCCcEEEEecCccccCCCcc
Confidence 244444443 47999999999998421 11 1222222122100 0001123334558888887653 1111
Q ss_pred -------CHHHHHHHHHHHhccccCCCCEEEEEeCCCc-cccCCCcccchHHHHHHHHHHHHHcCCeEEEEccccccee
Q 008312 354 -------SGDQYKWLEEDLANVEREVTPWLVATWHAPW-YSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYE 424 (570)
Q Consensus 354 -------~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~-y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~Ye 424 (570)
...-.+|..+.|..++ ..-+|+.+|.|+ +.....|.++ +++.+++++|+.++||+|| +|--.
T Consensus 150 ~~~~LrYP~weaey~lk~l~elk---~~r~IlLfhtpPd~~kg~~h~GS-----~~V~dlIk~~~P~ivl~Gh-ihe~~ 219 (255)
T PF14582_consen 150 EEFKLRYPAWEAEYSLKFLRELK---DYRKILLFHTPPDLHKGLIHVGS-----AAVRDLIKTYNPDIVLCGH-IHESH 219 (255)
T ss_dssp CSSS-EEEHHHHHHHHGGGGGCT---SSEEEEEESS-BTBCTCTBTTSB-----HHHHHHHHHH--SEEEE-S-SS-EE
T ss_pred ccccccchHHHHHHHHHHHHhcc---cccEEEEEecCCccCCCcccccH-----HHHHHHHHhcCCcEEEecc-cccch
Confidence 1223455556666653 234788899999 4433334333 5677899999999999999 99654
No 50
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.64 E-value=5.3e-07 Score=87.67 Aligned_cols=178 Identities=19% Similarity=0.254 Sum_probs=103.6
Q ss_pred CeEEEEEecCCCCCCh-HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhh
Q 008312 208 PSRIAIVGDVGLTYNT-TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQP 286 (570)
Q Consensus 208 ~~rf~vigD~g~~~~~-~~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~ 286 (570)
.+|+++++|+|..... .+.++.+...++|+++.+||++|.+ .|.. ...-+.. + ++.
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~----~~~~-------------~~~~~~~---~---~e~ 59 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFH----FGPK-------------EVAEELN---K---LEA 59 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhh----cCch-------------HHHHhhh---H---HHH
Confidence 5899999999987543 3344444456899999999999543 2221 0000000 1 344
Q ss_pred h-hccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecC--cCC----CCC-HHHH
Q 008312 287 V-LSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAY--VSF----DKS-GDQY 358 (570)
Q Consensus 287 l-~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~--~~~----~~~-~~Q~ 358 (570)
+ ...+|+++++||-|-.. -...... ....- .+ -+.+++++.|+.+... +.+ ... ++-+
T Consensus 60 l~~~~~~v~avpGNcD~~~-----v~~~l~~-~~~~v------~~--~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~ 125 (226)
T COG2129 60 LKELGIPVLAVPGNCDPPE-----VIDVLKN-AGVNV------HG--RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIY 125 (226)
T ss_pred HHhcCCeEEEEcCCCChHH-----HHHHHHh-ccccc------cc--ceEEecCcEEEEecccCCCCCCCccccCHHHHH
Confidence 4 35799999999987631 1111111 11110 11 5677888888885431 111 122 3334
Q ss_pred HHHHHHHhccccCCCCEEEEEeCCCccccCCCcccc-hHHHHHHHHHHHHHcCCeEEEEcccccceeee
Q 008312 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYRE-AECMRVAMEDLLYKYGVDVVFNGHQVHAYERS 426 (570)
Q Consensus 359 ~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~-~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~ 426 (570)
.-|++-+.+.+.. -.|+.+|.|+|.+....... ...-...+.+++++.++-+.++|| .|-+.-.
T Consensus 126 s~l~~~v~~~~~~---~~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GH-IHEs~G~ 190 (226)
T COG2129 126 SKLKSLVKKADNP---VNILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGH-IHESRGI 190 (226)
T ss_pred HHHHHHHhcccCc---ceEEEecCCCCCccccCCCCccccchHHHHHHHHHhCCceEEEee-ecccccc
Confidence 4455555554321 13889999999864332111 111236777899999999999999 9985433
No 51
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.59 E-value=5.8e-07 Score=90.51 Aligned_cols=175 Identities=17% Similarity=0.149 Sum_probs=90.0
Q ss_pred eEEEEEecCCCCC------Ch----HHHHHHHHhCCCC-EEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHH
Q 008312 209 SRIAIVGDVGLTY------NT----TSTVSHMISNRPD-LILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRW 277 (570)
Q Consensus 209 ~rf~vigD~g~~~------~~----~~~i~~l~~~~pD-fvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~w 277 (570)
++|++++|+|... .. ...++++.+.+|| +++..||++......+ . ...
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~----------------~-----~~~ 59 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPST----------------A-----TKG 59 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchh----------------c-----cCC
Confidence 5899999999553 11 3456666667788 7799999985421100 0 001
Q ss_pred HHHHHhhhhhhccCCeEEeccCccccccccchhhhhhhcccCCCC---C----C---CCCCCcceEEEEeCeEEE--EEe
Q 008312 278 DYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPS---K----E---SGSLSKFYYSFNAGGIHF--LML 345 (570)
Q Consensus 278 d~~~~~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~---~----~---~~~~~~~yYSf~~G~v~f--I~L 345 (570)
....+.+..+ -.-++++||||+.... ..+.........|. + . .......|.-++.+++++ +.+
T Consensus 60 ~~~~~~l~~~---g~d~~~~GNHe~d~g~--~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~ 134 (252)
T cd00845 60 EANIELMNAL---GYDAVTIGNHEFDYGL--DALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGL 134 (252)
T ss_pred cHHHHHHHhc---CCCEEeeccccccccH--HHHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEe
Confidence 1122233322 2456778999986432 23333333322221 0 0 001123355677787554 444
Q ss_pred ecCcC--C-----CC---CHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHH-cCCeEE
Q 008312 346 AAYVS--F-----DK---SGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVV 414 (570)
Q Consensus 346 dt~~~--~-----~~---~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-y~Vdlv 414 (570)
.+... + .. .....+.+++..+. .+.+...+|++.|.+.... . .+.++ .+||++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vIvl~H~g~~~~------------~---~la~~~~giDlv 198 (252)
T cd00845 135 TTPDTPTYTPLGWIIGLPFEDLAEAVAVAEEL-LAEGADVIILLSHLGLDDD------------E---ELAEEVPGIDVI 198 (252)
T ss_pred ccccceeecCCCcccCceecCHHHHHHHHHHH-HhCCCCEEEEEeccCccch------------H---HHHhcCCCccEE
Confidence 33211 0 00 01223334332222 1245678999999875430 1 12222 689999
Q ss_pred EEcccccceeee
Q 008312 415 FNGHQVHAYERS 426 (570)
Q Consensus 415 lsGH~~H~YeR~ 426 (570)
|+|| .|..+..
T Consensus 199 lggH-~H~~~~~ 209 (252)
T cd00845 199 LGGH-THHLLEE 209 (252)
T ss_pred EcCC-cCcccCC
Confidence 9999 9986543
No 52
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.56 E-value=2.1e-07 Score=89.74 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=24.6
Q ss_pred EEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeeee
Q 008312 377 VATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERSN 427 (570)
Q Consensus 377 IV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~ 427 (570)
|++.|.|.+. +..+.+++++|||| +|.-++..
T Consensus 129 ilL~H~P~~~------------------~~~~~~~dl~lSGH-tHgGqi~~ 160 (193)
T cd08164 129 ILLTHVPLYK------------------IFLEGKPGLILTGH-DHEGCDYQ 160 (193)
T ss_pred EEEEccccee------------------ccccCCCCEEEeCc-cCCCeEEE
Confidence 8888999765 22235789999999 99877764
No 53
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.55 E-value=5.3e-07 Score=88.45 Aligned_cols=194 Identities=19% Similarity=0.261 Sum_probs=99.5
Q ss_pred EEEecCCCCCChH---HHHHHHHh----CCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhh
Q 008312 212 AIVGDVGLTYNTT---STVSHMIS----NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYM 284 (570)
Q Consensus 212 ~vigD~g~~~~~~---~~i~~l~~----~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l 284 (570)
++++|+|.+.... .....+.+ .++|.++++||++.. +. +.. ..... .....+...+
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~--~~--~~~----------~~~~~---~~~~~~~~l~ 63 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDL--WF--GDD----------EVVPP---AAHEVLAALL 63 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEE--Ee--cCC----------CCCCh---HHHHHHHHHH
Confidence 4789999875432 22333332 489999999999953 11 110 00001 1111123444
Q ss_pred hhhhccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCcCCCCCHHHHHHHHHH
Q 008312 285 QPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLEED 364 (570)
Q Consensus 285 ~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~~~~~~Q~~WLe~~ 364 (570)
+.+....+++.++||||..... + +..+..... .......+.+++.+++++-.. .++.....+.|+...
T Consensus 64 ~~~~~~~~v~~v~GNHD~~~~~----~--~~~~~~~~~-----~~~~~~~~~~~g~~~~~~HG~-~~d~~~~~~~~~~~~ 131 (217)
T cd07398 64 RLADRGTRVYYVPGNHDFLLGD----F--FAEELGLIL-----LPDPLVHLELDGKRILLEHGD-QFDTDDRAYQLLRRL 131 (217)
T ss_pred HHHHCCCeEEEECCCchHHHHh----H--HHHHcCCEE-----eccceEEEeeCCeEEEEECCC-cCchhHHHHHHHHHH
Confidence 4556779999999999985321 1 111111000 011121567788888888664 234445556666554
Q ss_pred HhccccCCCCEEEEEeCCC---------cccc----C--CCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeeeecc
Q 008312 365 LANVEREVTPWLVATWHAP---------WYST----Y--KAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERSNRV 429 (570)
Q Consensus 365 L~~~~r~~~pwiIV~~H~P---------~y~s----~--~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~pv 429 (570)
+..... .+.++..+.. ...+ . ...........+.+..++.+++++++++|| +|......
T Consensus 132 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH-~H~~~~~~-- 205 (217)
T cd07398 132 GRNPYD---QLLFLNRPLNRRRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGH-THRPALHE-- 205 (217)
T ss_pred hCcHHH---HHHHhcchHHHHHHHHHhhhhhhHHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECC-CCCCCeEE--
Confidence 322100 0000000000 0000 0 000011223456677778889999999999 99776543
Q ss_pred ccCccCCCCcEEEEECC
Q 008312 430 YNYTLDPCGPVHITVGD 446 (570)
Q Consensus 430 ~n~~~~~~g~vyiv~G~ 446 (570)
..+..|+..|+
T Consensus 206 ------~~~~~~~n~G~ 216 (217)
T cd07398 206 ------LDGKLYINLGD 216 (217)
T ss_pred ------ECCEEEEECCC
Confidence 13677888776
No 54
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.53 E-value=1.9e-06 Score=80.35 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=44.0
Q ss_pred CCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeeeeccccCccCCCCcEEEEECC
Q 008312 372 VTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERSNRVYNYTLDPCGPVHITVGD 446 (570)
Q Consensus 372 ~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~pv~n~~~~~~g~vyiv~G~ 446 (570)
...-.|||.|.|+++..... ..+.+++++++|+.++.|| .|.-.|-.+-.. +-.|+-|+.+.+
T Consensus 157 ~~~~fivM~HYPP~s~~~t~--------~~~sevlee~rv~~~lyGH-lHgv~~p~~~~s---~v~Gi~y~Lvaa 219 (230)
T COG1768 157 GVSKFIVMTHYPPFSDDGTP--------GPFSEVLEEGRVSKCLYGH-LHGVPRPNIGFS---NVRGIEYMLVAA 219 (230)
T ss_pred CcCeEEEEEecCCCCCCCCC--------cchHHHHhhcceeeEEeee-ccCCCCCCCCcc---cccCceEEEEec
Confidence 33458999999999864322 2456788899999999999 999887654222 224777765543
No 55
>PRK09453 phosphodiesterase; Provisional
Probab=98.49 E-value=6e-06 Score=79.18 Aligned_cols=75 Identities=19% Similarity=0.318 Sum_probs=45.2
Q ss_pred eEEEEEecCCCCCCh-HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhhh
Q 008312 209 SRIAIVGDVGLTYNT-TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPV 287 (570)
Q Consensus 209 ~rf~vigD~g~~~~~-~~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~l 287 (570)
+|++++||+|..... ...++.+.+.++|.|+++||++... . ..+..+.|+ .++..+.++.+
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~~------~----------~~~~~~~~~--~~~~~~~l~~~ 62 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYHG------P----------RNPLPEGYA--PKKVAELLNAY 62 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEcccccccC------c----------CCCCccccC--HHHHHHHHHhc
Confidence 589999999965322 2344445567899999999998521 1 001111121 12223333332
Q ss_pred hccCCeEEeccCcccc
Q 008312 288 LSKVPIMVVEGNHEYE 303 (570)
Q Consensus 288 ~~~iP~~~v~GNHD~~ 303 (570)
..+++.+.||||..
T Consensus 63 --~~~v~~V~GNhD~~ 76 (182)
T PRK09453 63 --ADKIIAVRGNCDSE 76 (182)
T ss_pred --CCceEEEccCCcch
Confidence 36899999999963
No 56
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.46 E-value=3.1e-06 Score=85.89 Aligned_cols=174 Identities=18% Similarity=0.173 Sum_probs=89.6
Q ss_pred eEEEEEecCCCCC-----------ChHHHHHHHHhCCCC-EEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHH
Q 008312 209 SRIAIVGDVGLTY-----------NTTSTVSHMISNRPD-LILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPR 276 (570)
Q Consensus 209 ~rf~vigD~g~~~-----------~~~~~i~~l~~~~pD-fvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~ 276 (570)
++|+++.|+|.-. .....++++.+.+++ +++.+||++....... + .+
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~--------------------~-~~ 59 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLST--------------------A-TK 59 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchh--------------------h-cC
Confidence 4678888887211 112345555556788 9999999985321100 0 00
Q ss_pred HHHHHHhhhhhhccCCeEEeccCccccccccchhhhhhhcccCCCC---C----C---CCCCCcceEEEEeCeEEE--EE
Q 008312 277 WDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPS---K----E---SGSLSKFYYSFNAGGIHF--LM 344 (570)
Q Consensus 277 wd~~~~~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~---~----~---~~~~~~~yYSf~~G~v~f--I~ 344 (570)
.+...+.|+.+ . .-+.++||||+.... ..+........+|- + . .-...+.|.-++.+++++ |.
T Consensus 60 g~~~~~~l~~l--~-~d~~~~GNHefd~g~--~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG 134 (257)
T cd07406 60 GKQMVPVLNAL--G-VDLACFGNHEFDFGE--DQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLG 134 (257)
T ss_pred CccHHHHHHhc--C-CcEEeecccccccCH--HHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEE
Confidence 11222333332 1 236689999995432 23333332222221 0 0 001124677788888654 44
Q ss_pred eecCcCC------CC---CHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHH-cCCeEE
Q 008312 345 LAAYVSF------DK---SGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVV 414 (570)
Q Consensus 345 Ldt~~~~------~~---~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-y~Vdlv 414 (570)
+-+.... .. -..-.+.+++.+++..+.+...+|++.|-+... .. .+.++ .+||++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~~~~~~~D~iVvl~H~g~~~--------d~-------~la~~~~~iD~I 199 (257)
T cd07406 135 LVEEEWLETLTIDPEYVRYRDYVETARELVDELREQGADLIIALTHMRLPN--------DK-------RLAREVPEIDLI 199 (257)
T ss_pred EecccccccccCCCCcceEcCHHHHHHHHHHHHHhCCCCEEEEEeccCchh--------hH-------HHHHhCCCCceE
Confidence 4432110 00 112233344444333335677899999987531 11 22233 479999
Q ss_pred EEccccccee
Q 008312 415 FNGHQVHAYE 424 (570)
Q Consensus 415 lsGH~~H~Ye 424 (570)
|+|| .|..+
T Consensus 200 lgGH-~H~~~ 208 (257)
T cd07406 200 LGGH-DHEYI 208 (257)
T ss_pred Eecc-cceeE
Confidence 9999 99876
No 57
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.46 E-value=5.2e-06 Score=85.02 Aligned_cols=189 Identities=16% Similarity=0.160 Sum_probs=93.1
Q ss_pred eEEEEEecCCCCCC-----------------hHHHHHHHHhCCCCEEEE-cCCcccccccccCCCCCCcccccCCCCCcc
Q 008312 209 SRIAIVGDVGLTYN-----------------TTSTVSHMISNRPDLILL-VGDVTYANLYLTNGTGSDCYACSFANSPIH 270 (570)
Q Consensus 209 ~rf~vigD~g~~~~-----------------~~~~i~~l~~~~pDfvl~-~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~ 270 (570)
++|++++|+|.... ....++++.+.+|+.+++ +||++....... +....
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~-------~~~~~------ 67 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLAD-------YYAKI------ 67 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHH-------Hhhhc------
Confidence 47888888886421 123455555567887776 999985421100 00000
Q ss_pred cchHHHHHHHHHhhhhhhccCCeEEeccCccccccccchhhhhhhcccCCCC---C----C-CCCCCcceEEEEeC-eEE
Q 008312 271 ETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPS---K----E-SGSLSKFYYSFNAG-GIH 341 (570)
Q Consensus 271 e~Y~~~wd~~~~~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~---~----~-~~~~~~~yYSf~~G-~v~ 341 (570)
+ ........+.|+.+ .. -+.++||||+... ...+........+|- + . .......|.-++.+ +++
T Consensus 68 ~--~~~~~~~~~~ln~~--g~-d~~~lGNHe~d~g--~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~k 140 (277)
T cd07410 68 E--DGDPHPMIAAMNAL--GY-DAGTLGNHEFNYG--LDYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVK 140 (277)
T ss_pred c--cCCCChHHHHHHhc--CC-CEEeecccCcccC--HHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCE
Confidence 0 00001123333333 23 3667899998632 223333333333331 0 0 01122346667888 865
Q ss_pred EEEeecCcCC---------------CCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHH
Q 008312 342 FLMLAAYVSF---------------DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLL 406 (570)
Q Consensus 342 fI~Ldt~~~~---------------~~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll 406 (570)
+-++.--... ....+..++..++|++ .++..+|+++|........... . .+.....|.
T Consensus 141 VgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~~~~~~~~~-~---~~~~~~~la 213 (277)
T cd07410 141 VGIIGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGFERDLEESL-T---GENAAYELA 213 (277)
T ss_pred EEEEecCCcccccccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCcCCCccccc-C---CccHHHHHH
Confidence 5555421111 0112234444445543 3567899999988664321000 0 111222344
Q ss_pred HH-cCCeEEEEcccccceee
Q 008312 407 YK-YGVDVVFNGHQVHAYER 425 (570)
Q Consensus 407 ~~-y~VdlvlsGH~~H~YeR 425 (570)
++ -+||++|+|| .|....
T Consensus 214 ~~~~~vD~IlgGH-sH~~~~ 232 (277)
T cd07410 214 EEVPGIDAILTGH-QHRRFP 232 (277)
T ss_pred hcCCCCcEEEeCC-Cccccc
Confidence 44 5899999999 997543
No 58
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.38 E-value=2e-06 Score=92.28 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=30.1
Q ss_pred CeEEEEEecCCCCCCh---------H----HHHHHHHhCCCCEEEEcCCcccc
Q 008312 208 PSRIAIVGDVGLTYNT---------T----STVSHMISNRPDLILLVGDVTYA 247 (570)
Q Consensus 208 ~~rf~vigD~g~~~~~---------~----~~i~~l~~~~pDfvl~~GDl~Y~ 247 (570)
.+||++++|+|.+... . .+++.+.+.++|+||++||+...
T Consensus 3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~ 55 (405)
T TIGR00583 3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHE 55 (405)
T ss_pred ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCC
Confidence 5899999999987421 2 23444456799999999999964
No 59
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.30 E-value=3.2e-05 Score=78.53 Aligned_cols=186 Identities=20% Similarity=0.277 Sum_probs=99.9
Q ss_pred EEEEecCCCCCChHHH---HHHHHh---CCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhh
Q 008312 211 IAIVGDVGLTYNTTST---VSHMIS---NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYM 284 (570)
Q Consensus 211 f~vigD~g~~~~~~~~---i~~l~~---~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l 284 (570)
|+|.||.|... ... ++.+.+ .++|++|++||+.-.. +....++- .....| ..+..|.+++
T Consensus 1 i~v~Gd~HG~~--~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~----~~~d~~~~-------~~p~k~-~~~~~f~~~~ 66 (262)
T cd00844 1 IAVEGCCHGEL--DKIYETLEKIEKKEGTKVDLLICCGDFQAVR----NEADLKCM-------AVPPKY-RKMGDFYKYY 66 (262)
T ss_pred CEEEecCCccH--HHHHHHHHHHHHhcCCCCcEEEEcCCCCCcC----Ccchhhhh-------ccchhh-hhhhhHHHHh
Confidence 58999999853 333 333322 3699999999996321 11110000 011112 1345555555
Q ss_pred hhh-hccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceE-----EEEeCeEEEEEeecCc---CCCC--
Q 008312 285 QPV-LSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYY-----SFNAGGIHFLMLAAYV---SFDK-- 353 (570)
Q Consensus 285 ~~l-~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yY-----Sf~~G~v~fI~Ldt~~---~~~~-- 353 (570)
+.. ...+|+++|.||||... .+.. ++..+ ....+.+| .+++++++|..|.... ++..
T Consensus 67 ~g~~~~p~~t~fi~GNHE~~~-----~l~~------l~~gg-~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~ 134 (262)
T cd00844 67 SGEKKAPILTIFIGGNHEASN-----YLWE------LPYGG-WVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGH 134 (262)
T ss_pred cCCccCCeeEEEECCCCCCHH-----HHHh------hcCCC-eecCcEEEecCCCEEEECCeEEEEeccccccccccccc
Confidence 543 35678899999999631 1111 11100 00123332 3567899999997632 1221
Q ss_pred ------CHHHHHHHH-------HHHhccccCCCCEEEEEeCCCccccCCCcccchH-----------------HHHHHHH
Q 008312 354 ------SGDQYKWLE-------EDLANVEREVTPWLVATWHAPWYSTYKAHYREAE-----------------CMRVAME 403 (570)
Q Consensus 354 ------~~~Q~~WLe-------~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~-----------------~~r~~l~ 403 (570)
...+.+.+. +.|.... . +--|+++|.|+..-... .... .-...+.
T Consensus 135 ~~~~~~t~~~~rs~y~~r~~~~~kl~~~~-~--~vDIlLSHdWP~gI~~~--~~~~~l~~~~~~~~~~~~~~~~Gs~~~~ 209 (262)
T cd00844 135 FERPPYSEDTKRSAYHVRNIEVFKLKQLK-Q--PIDIFLSHDWPRGIYKH--GDKKQLLRKKPFFRQDIESGTLGSPAAE 209 (262)
T ss_pred ccCCCCCHHHHHHhhhhhHHHHHHHHhcC-C--CCcEEEeCCCCcchhhc--cchHHhhhcCccchhcccccCCCCHHHH
Confidence 223333211 1122221 1 22588899998864221 1100 0124677
Q ss_pred HHHHHcCCeEEEEcccccc-eeeeec
Q 008312 404 DLLYKYGVDVVFNGHQVHA-YERSNR 428 (570)
Q Consensus 404 ~ll~~y~VdlvlsGH~~H~-YeR~~p 428 (570)
.++++.+.+.+|+|| .|. |++..|
T Consensus 210 ~ll~~lkPryhf~gH-~H~~f~~~~~ 234 (262)
T cd00844 210 ELLKHLKPRYWFSAH-LHVKFAALVP 234 (262)
T ss_pred HHHHHhCCCEEEEec-CCcccceecC
Confidence 899999999999999 997 777754
No 60
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.26 E-value=1.6e-05 Score=80.93 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=78.4
Q ss_pred HHHHHHhC-CCCEE-EEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhhhhccCCeEEeccCcccc
Q 008312 226 TVSHMISN-RPDLI-LLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE 303 (570)
Q Consensus 226 ~i~~l~~~-~pDfv-l~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~iP~~~v~GNHD~~ 303 (570)
.++++.+. .+|.+ +.+||+...... . +..+.....+.|.. +++.++.||||+.
T Consensus 41 ~v~~~~~~~~~~~l~l~~GD~~~gs~~-------------------~--~~~~g~~~~~~l~~----~g~da~~GNHefd 95 (264)
T cd07411 41 LIKRIRAERNPNTLLLDGGDTWQGSGE-------------------A--LYTRGQAMVDALNA----LGVDAMVGHWEFT 95 (264)
T ss_pred HHHHHHHhcCCCeEEEeCCCccCCChH-------------------H--hhcCChhHHHHHHh----hCCeEEecccccc
Confidence 45555556 78977 679999953211 0 00011122233332 5555555999986
Q ss_pred ccccchhhhhhhcccCCCC---C----CCC-CCCcceEEEEeCeEE--EEEeecCcC--C-----CC---CHHHHHHHHH
Q 008312 304 EQAENRTFVAYTSRFAFPS---K----ESG-SLSKFYYSFNAGGIH--FLMLAAYVS--F-----DK---SGDQYKWLEE 363 (570)
Q Consensus 304 ~~~~~~~~~~y~~~f~~P~---~----~~~-~~~~~yYSf~~G~v~--fI~Ldt~~~--~-----~~---~~~Q~~WLe~ 363 (570)
... ..+....+.+.+|- + +.+ .....|.-++.++++ ||.+.+... . .. .....+.+++
T Consensus 96 ~g~--~~l~~~~~~~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (264)
T cd07411 96 YGP--ERVRELFGRLNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQE 173 (264)
T ss_pred cCH--HHHHHHHhhCCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECCHHHHHHH
Confidence 432 23333333333332 0 000 112235567788754 555544210 0 00 1223445555
Q ss_pred HHhccc-cCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHH-cCCeEEEEcccccce
Q 008312 364 DLANVE-REVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVVFNGHQVHAY 423 (570)
Q Consensus 364 ~L~~~~-r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-y~VdlvlsGH~~H~Y 423 (570)
.+++.. +.+...+|++.|-+... .. .+.++ .+||++|+|| .|..
T Consensus 174 ~~~~~~~~~~~D~iI~l~H~g~~~--------~~-------~la~~~~~iDlilgGH-~H~~ 219 (264)
T cd07411 174 VVVKLRREEGVDVVVLLSHNGLPV--------DV-------ELAERVPGIDVILSGH-THER 219 (264)
T ss_pred HHHHHHHhCCCCEEEEEecCCchh--------hH-------HHHhcCCCCcEEEeCc-cccc
Confidence 533332 24567899999987532 11 12222 5799999999 9964
No 61
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.23 E-value=5.5e-06 Score=89.07 Aligned_cols=75 Identities=20% Similarity=0.324 Sum_probs=51.4
Q ss_pred eEEEEEecCCCCC---Ch-----------HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchH
Q 008312 209 SRIAIVGDVGLTY---NT-----------TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQ 274 (570)
Q Consensus 209 ~rf~vigD~g~~~---~~-----------~~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~ 274 (570)
+||++++|+|.+. +. ...++.+.+.++||||++||+...+. |..
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~------------------Ps~---- 58 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNN------------------PSP---- 58 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCC------------------CCH----
Confidence 5899999999982 11 12455556789999999999996421 111
Q ss_pred HHHHHHHHhhhhh-hccCCeEEeccCcccccc
Q 008312 275 PRWDYWGRYMQPV-LSKVPIMVVEGNHEYEEQ 305 (570)
Q Consensus 275 ~~wd~~~~~l~~l-~~~iP~~~v~GNHD~~~~ 305 (570)
..-..+.+.++.+ ..++|++++.||||....
T Consensus 59 ~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~~ 90 (390)
T COG0420 59 RALKLFLEALRRLKDAGIPVVVIAGNHDSPSR 90 (390)
T ss_pred HHHHHHHHHHHHhccCCCcEEEecCCCCchhc
Confidence 1113455555555 357999999999998643
No 62
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.16 E-value=0.00012 Score=74.00 Aligned_cols=191 Identities=18% Similarity=0.293 Sum_probs=98.9
Q ss_pred EEEEEecCCCCCChH---HHHHHHHh-CCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhh
Q 008312 210 RIAIVGDVGLTYNTT---STVSHMIS-NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQ 285 (570)
Q Consensus 210 rf~vigD~g~~~~~~---~~i~~l~~-~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~ 285 (570)
||+++||.=...... ..+.++.+ .++||+|..||++-. |.+ +. ....+.|.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~g------g~g------------l~-------~~~~~~L~ 55 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAG------GKG------------IT-------PKIAKELL 55 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccC------CCC------------CC-------HHHHHHHH
Confidence 588999985443322 23444443 479999999999842 211 10 11222333
Q ss_pred hhhccCCeEEeccCccccccccchhhhhhhcccC---CCCCC-CCCCCcceEEEEeCeEEEEEeec--CcCCCCCHHHHH
Q 008312 286 PVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFA---FPSKE-SGSLSKFYYSFNAGGIHFLMLAA--YVSFDKSGDQYK 359 (570)
Q Consensus 286 ~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~---~P~~~-~~~~~~~yYSf~~G~v~fI~Ldt--~~~~~~~~~Q~~ 359 (570)
.+ .+- +++.||||+... ....+..... .|.+- .+.....|.-++.+++++-+++- .........-++
T Consensus 56 ~~--G~D-~iTlGNH~fD~g----el~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~~ 128 (255)
T cd07382 56 SA--GVD-VITMGNHTWDKK----EILDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPFR 128 (255)
T ss_pred hc--CCC-EEEecccccCcc----hHHHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHHH
Confidence 22 333 445599999643 1222222221 11111 11223457778888766555543 211111111233
Q ss_pred HHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeeeeccccCccCCCCc
Q 008312 360 WLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERSNRVYNYTLDPCGP 439 (570)
Q Consensus 360 WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~pv~n~~~~~~g~ 439 (570)
-+++.+++... ++..+||.+|.-.. .+ +.++.. ...-+||+++.|| .|..--... +-|+|+
T Consensus 129 ~~~~~v~~lk~-~~D~IIV~~H~g~t---------sE--k~ala~-~ldg~VdvIvGtH-THv~t~d~~-----il~~gT 189 (255)
T cd07382 129 AADELLEELKE-EADIIFVDFHAEAT---------SE--KIALGW-YLDGRVSAVVGTH-THVQTADER-----ILPGGT 189 (255)
T ss_pred HHHHHHHHHhc-CCCEEEEEECCCCC---------HH--HHHHHH-hCCCCceEEEeCC-CCccCCccE-----EeeCCe
Confidence 45556655543 56789999997321 11 112221 2234699999999 996432211 125789
Q ss_pred EEEEE-CCCCccC
Q 008312 440 VHITV-GDGGNRE 451 (570)
Q Consensus 440 vyiv~-G~gG~~e 451 (570)
.||+. |.-|...
T Consensus 190 a~itd~Gm~G~~~ 202 (255)
T cd07382 190 AYITDVGMTGPYD 202 (255)
T ss_pred EEEecCccccCCC
Confidence 88864 6666543
No 63
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.13 E-value=8.9e-05 Score=76.51 Aligned_cols=83 Identities=17% Similarity=0.150 Sum_probs=44.2
Q ss_pred HHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHH--cCCeEEEEcccccceeeeeccccCccCC
Q 008312 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK--YGVDVVFNGHQVHAYERSNRVYNYTLDP 436 (570)
Q Consensus 359 ~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~--y~VdlvlsGH~~H~YeR~~pv~n~~~~~ 436 (570)
+-+++.+++....+...+|++.|.......... . .+....+...++.+ -+||++|+|| .|...... . ..-
T Consensus 178 e~~~~~v~~lr~~~~D~IIvL~H~G~~~~~~~~-~-~~~~~~~~~~l~~~~~~~iD~IlgGH-sH~~~~~~-~----~~~ 249 (288)
T cd07412 178 EAINAVAPELKAGGVDAIVVLAHEGGSTKGGDD-T-CSAASGPIADIVNRLDPDVDVVFAGH-THQAYNCT-V----PAG 249 (288)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCCCCCCCCc-c-ccccChhHHHHHhhcCCCCCEEEeCc-cCcccccc-c----cCc
Confidence 445554444433457789999997765321110 0 00011122334444 4799999999 99765421 0 012
Q ss_pred CCcEEEEECCCCc
Q 008312 437 CGPVHITVGDGGN 449 (570)
Q Consensus 437 ~g~vyiv~G~gG~ 449 (570)
++++.+-.|+-|.
T Consensus 250 ~~~~v~q~g~~g~ 262 (288)
T cd07412 250 NPRLVTQAGSYGK 262 (288)
T ss_pred CCEEEEecChhhc
Confidence 4566665565554
No 64
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.11 E-value=3.2e-05 Score=78.38 Aligned_cols=181 Identities=19% Similarity=0.213 Sum_probs=89.1
Q ss_pred eEEEEEecCCCCCC--------h---HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHH
Q 008312 209 SRIAIVGDVGLTYN--------T---TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRW 277 (570)
Q Consensus 209 ~rf~vigD~g~~~~--------~---~~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~w 277 (570)
++|+.++|+|.... . ...++++.+...++++.+||++..... .. ....
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~-------------------~~--~~~g 59 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPI-------------------SD--LDKG 59 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchh-------------------hh--hcCC
Confidence 47899999996421 1 223444443456899999999853211 00 0001
Q ss_pred HHHHHhhhhhhccCCeEEeccCccccccccchhhhhhhcccCCCCC-------CCCC-CCcceEEEEeC-e--EEEEEee
Q 008312 278 DYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSK-------ESGS-LSKFYYSFNAG-G--IHFLMLA 346 (570)
Q Consensus 278 d~~~~~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~-------~~~~-~~~~yYSf~~G-~--v~fI~Ld 346 (570)
....+.|..+ ..-+ .++||||+... .+.+..+...+.+|.- +.+. .-..|.-++.+ + +-||.+-
T Consensus 60 ~~~~~~ln~~--g~d~-~~~GNHefd~G--~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~ 134 (257)
T cd07408 60 ETIIKIMNAV--GYDA-VTPGNHEFDYG--LDRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLT 134 (257)
T ss_pred cHHHHHHHhc--CCcE-EccccccccCC--HHHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeec
Confidence 1122333332 3344 56799998632 2344444444444321 1010 11224455677 6 4555554
Q ss_pred cCc-CCC------CC---HHHHHHHHHH-HhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHH-cCCeEE
Q 008312 347 AYV-SFD------KS---GDQYKWLEED-LANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVV 414 (570)
Q Consensus 347 t~~-~~~------~~---~~Q~~WLe~~-L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-y~Vdlv 414 (570)
+.. ... .+ ..-.+-+++. .....+.+..-+|++.|.+....... . . .. .+..+ .+||++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~~~~~-~-~----~~---~la~~~~giDvI 205 (257)
T cd07408 135 TPETATKTHPKNVKDVTFEDPIEEAKKVIVAALKAKGADVIVALGHLGVDRTSSP-W-T----ST---ELAANVTGIDLI 205 (257)
T ss_pred CcCcccccCccccCCcEEecHHHHHHHHHHHHHHhCCCCEEEEEeCcCcCCCCCC-c-c----HH---HHHHhCCCceEE
Confidence 421 000 00 0112223333 22222245778999999887643211 1 1 11 22222 479999
Q ss_pred EEcccccceee
Q 008312 415 FNGHQVHAYER 425 (570)
Q Consensus 415 lsGH~~H~YeR 425 (570)
|.|| .|....
T Consensus 206 igGH-~H~~~~ 215 (257)
T cd07408 206 IDGH-SHTTIE 215 (257)
T ss_pred EeCC-Cccccc
Confidence 9999 997644
No 65
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.03 E-value=0.00042 Score=70.38 Aligned_cols=194 Identities=19% Similarity=0.216 Sum_probs=103.3
Q ss_pred eEEEEEecCCCCCCh---HHHHHHHHh-CCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhh
Q 008312 209 SRIAIVGDVGLTYNT---TSTVSHMIS-NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYM 284 (570)
Q Consensus 209 ~rf~vigD~g~~~~~---~~~i~~l~~-~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l 284 (570)
+||+++||.=..... ...+.++.+ .++||+|..||++-. |.+. . ....+.|
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~g------G~Gi------------~-------~~~~~~L 55 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTH------GKGL------------T-------LKIYEFL 55 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCC------CCCC------------C-------HHHHHHH
Confidence 589999998543211 223444443 478999999999832 2110 0 1112222
Q ss_pred hhhhccCCeEEeccCccccccccchhhhh---hhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCc-CCC-C--CHHH
Q 008312 285 QPVLSKVPIMVVEGNHEYEEQAENRTFVA---YTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYV-SFD-K--SGDQ 357 (570)
Q Consensus 285 ~~l~~~iP~~~v~GNHD~~~~~~~~~~~~---y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~-~~~-~--~~~Q 357 (570)
. ...+-++.+ |||+++...-...... .....++|.. ..+..|..++.++.++-+++-.. .+. . ...-
T Consensus 56 ~--~~GvDviT~-GNH~~Dkge~~~~i~~~~~~lrpanyp~~---~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~P 129 (266)
T TIGR00282 56 K--QSGVNYITM-GNHTWFQKLILDVVINQKDLVRPLNFDTS---FAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTNP 129 (266)
T ss_pred H--hcCCCEEEc-cchhccCcHHHHHHhccccccccCCCCCC---CCCCCcEEEEECCEEEEEEECCCcccCCccccCCH
Confidence 2 234555555 9999974321011111 1111123322 22344666788876666555311 111 1 1112
Q ss_pred HHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeeeeccccCccCCC
Q 008312 358 YKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERSNRVYNYTLDPC 437 (570)
Q Consensus 358 ~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~pv~n~~~~~~ 437 (570)
.+-+++.+++.+. +++.+||.+|.-.- . .+.....+.+.+|++|+.-| .|..--..++ =|+
T Consensus 130 f~~~d~~i~~lk~-~~d~IIVd~Haeat-----------s-EK~a~~~~ldg~vsaVvGtH-tHV~TaD~~i-----l~~ 190 (266)
T TIGR00282 130 FKVLKELINMLKK-DCDLIFVDFHAETT-----------S-EKNAFGMAFDGYVTAVVGTH-THVPTADLRI-----LPK 190 (266)
T ss_pred HHHHHHHHHhhhc-CCCEEEEEeCCCCH-----------H-HHHHHHHHhCCCccEEEeCC-CCCCCCccee-----CCC
Confidence 2234444444432 46789999995421 1 13345677788999999999 9964322221 268
Q ss_pred CcEEEEE-CCCCccCC
Q 008312 438 GPVHITV-GDGGNREK 452 (570)
Q Consensus 438 g~vyiv~-G~gG~~e~ 452 (570)
|+.||+- |+-|...+
T Consensus 191 gtayitD~Gm~G~~~s 206 (266)
T TIGR00282 191 GTAYITDVGMTGPFGS 206 (266)
T ss_pred CCEEEecCCcccCccc
Confidence 9999974 77776543
No 66
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.03 E-value=0.00035 Score=71.87 Aligned_cols=201 Identities=17% Similarity=0.233 Sum_probs=99.1
Q ss_pred CeEEEEEecCCCCCCh--------------HHHHHHHH----hCCCC-EEEEcCCcccccccccCCCCCCcccccCCCCC
Q 008312 208 PSRIAIVGDVGLTYNT--------------TSTVSHMI----SNRPD-LILLVGDVTYANLYLTNGTGSDCYACSFANSP 268 (570)
Q Consensus 208 ~~rf~vigD~g~~~~~--------------~~~i~~l~----~~~pD-fvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~ 268 (570)
.++|++.+|+|..... .+.++++. +.+++ +++..||.+....+
T Consensus 5 ~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~------------------ 66 (282)
T cd07407 5 DINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGL------------------ 66 (282)
T ss_pred eEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeec------------------
Confidence 6899999999964210 12233332 23455 67889999954321
Q ss_pred cccchHHHHHHHHHhhhhhhccCCe-EEeccCccccccccc-hhhhhhhcccCCCC---C-----CCC---CCCcceEEE
Q 008312 269 IHETYQPRWDYWGRYMQPVLSKVPI-MVVEGNHEYEEQAEN-RTFVAYTSRFAFPS---K-----ESG---SLSKFYYSF 335 (570)
Q Consensus 269 ~~e~Y~~~wd~~~~~l~~l~~~iP~-~~v~GNHD~~~~~~~-~~~~~y~~~f~~P~---~-----~~~---~~~~~yYSf 335 (570)
...+..++....+.|..+ ++ .+++||||+...... ..+..+.....+|- + +.+ .....|.-+
T Consensus 67 -~~~~~~~g~~~~~~mN~m----gyDa~tlGNHEFd~g~~~l~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~ 141 (282)
T cd07407 67 -SDASPPPGSYSNPIFRMM----PYDLLTIGNHELYNYEVADDEYEGFVPSWGDRYLTSNVDITDDSGLLVPIGSRYRKF 141 (282)
T ss_pred -eeeecCCChHHHHHHHhc----CCcEEeecccccCccccHHHHHHHHHhhcCCCEEEEEEEEeCCCCcccccccceEEE
Confidence 111101223333444433 32 578999999532211 11222222222221 0 000 112235666
Q ss_pred EeC-eEE--EEEeecCcC-------CCC--CHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHH
Q 008312 336 NAG-GIH--FLMLAAYVS-------FDK--SGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAME 403 (570)
Q Consensus 336 ~~G-~v~--fI~Ldt~~~-------~~~--~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~ 403 (570)
+.+ +++ +|.+-+... +.. ...+.+|+.+.|++ .+...+|+++|....... + ..+..+
T Consensus 142 ~~~~G~kIgiiGltt~~~~~~~~~~f~d~~~~~~~~~v~~~l~~---~~~DvIIvlsH~G~~~d~-----~---~~~~~~ 210 (282)
T cd07407 142 TTKHGLRVLAFGFLFDFKGAANGVTVQPVADVVQEPWFQDAINN---EDVDLILVLGHMPVRDDA-----E---FKVLHD 210 (282)
T ss_pred EcCCCcEEEEEEEecccccCCCCcEEcCHHHHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCc-----c---HHHHHH
Confidence 765 655 555543211 111 12333588888874 356779999998764321 1 111112
Q ss_pred HHHHHc-CCe-EEEEcccccceeeeeccccCccCCCCcEEEEECCCCcc
Q 008312 404 DLLYKY-GVD-VVFNGHQVHAYERSNRVYNYTLDPCGPVHITVGDGGNR 450 (570)
Q Consensus 404 ~ll~~y-~Vd-lvlsGH~~H~YeR~~pv~n~~~~~~g~vyiv~G~gG~~ 450 (570)
.+.++. ++| ++|.|| .|...... + .+|+..+-.|.-|..
T Consensus 211 ~la~~~~~id~~Ii~GH-sH~~~~~~-~------~~~~~ivq~G~~g~~ 251 (282)
T cd07407 211 AIRKIFPDTPIQFLGGH-SHVRDFTQ-Y------DSSSTGLESGRYLET 251 (282)
T ss_pred HHHHhCCCCCEEEEeCC-ccccccee-c------cCcEEEEeccchhhc
Confidence 233344 567 799999 99643321 1 135554545555543
No 67
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.99 E-value=9.9e-05 Score=70.18 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=29.3
Q ss_pred eEEEEEecCCCCCCh-HHHHHHHHhCCCCEEEEcCCcccc
Q 008312 209 SRIAIVGDVGLTYNT-TSTVSHMISNRPDLILLVGDVTYA 247 (570)
Q Consensus 209 ~rf~vigD~g~~~~~-~~~i~~l~~~~pDfvl~~GDl~Y~ 247 (570)
++|+++||+|..... ....+.....++|+|||+||.+..
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~ 41 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSP 41 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCc
Confidence 689999999987532 233344445699999999999953
No 68
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=97.93 E-value=7.3e-05 Score=76.85 Aligned_cols=113 Identities=19% Similarity=0.295 Sum_probs=60.3
Q ss_pred EEeccCccccccccchhhhhhhcccCCCCC-------CC----CCCCcceEEEEeCeEE--EEEeecCcC-C-C---C--
Q 008312 294 MVVEGNHEYEEQAENRTFVAYTSRFAFPSK-------ES----GSLSKFYYSFNAGGIH--FLMLAAYVS-F-D---K-- 353 (570)
Q Consensus 294 ~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~-------~~----~~~~~~yYSf~~G~v~--fI~Ldt~~~-~-~---~-- 353 (570)
+.++||||+.... ..+..+.....+|.- +. ......|.-++.++++ ||.+-+... . . .
T Consensus 85 ~~~lGNHefd~G~--~~l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~ 162 (281)
T cd07409 85 AMTLGNHEFDDGV--EGLAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGKV 162 (281)
T ss_pred EEEeccccccCCH--HHHHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEEecCcccccccCCCce
Confidence 4567999997432 233333333333321 00 0112345667888855 455433210 0 0 0
Q ss_pred -CHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHH-cCCeEEEEccccccee
Q 008312 354 -SGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVVFNGHQVHAYE 424 (570)
Q Consensus 354 -~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-y~VdlvlsGH~~H~Ye 424 (570)
-..-.+.+++.+++....+...+|++.|-.... . . .+.++ -+||++|+|| .|...
T Consensus 163 ~~~d~~~~~~~~v~~lr~~~~D~II~l~H~G~~~--------d----~---~la~~~~giD~IiggH-~H~~~ 219 (281)
T cd07409 163 KFLDEIEAAQKEADKLKAQGVNKIIALSHSGYEV--------D----K---EIARKVPGVDVIVGGH-SHTFL 219 (281)
T ss_pred EECCHHHHHHHHHHHHHhcCCCEEEEEeccCchh--------H----H---HHHHcCCCCcEEEeCC-cCccc
Confidence 123345566666665444577899999976321 1 1 22222 5799999999 99854
No 69
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.93 E-value=0.00018 Score=87.58 Aligned_cols=184 Identities=20% Similarity=0.238 Sum_probs=93.7
Q ss_pred CCeEEEEEecCCCCCCh----HHHHHHHHhCCCCEEEE-cCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHH
Q 008312 207 YPSRIAIVGDVGLTYNT----TSTVSHMISNRPDLILL-VGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWG 281 (570)
Q Consensus 207 ~~~rf~vigD~g~~~~~----~~~i~~l~~~~pDfvl~-~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~ 281 (570)
..++|++++|+|..... ...++++.+.+|+.+++ +||++..... ... .++....
T Consensus 659 ~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~-------------------~~~--~~g~~~~ 717 (1163)
T PRK09419 659 WELTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLY-------------------SNL--LKGLPVL 717 (1163)
T ss_pred eEEEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcch-------------------hhh--cCChHHH
Confidence 46999999999965322 23455666678887765 9999853211 000 0112223
Q ss_pred HhhhhhhccCCeEEeccCccccccccchhhhhhhcccC------------CCC---C----CCCC---CCcceEEEEeCe
Q 008312 282 RYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFA------------FPS---K----ESGS---LSKFYYSFNAGG 339 (570)
Q Consensus 282 ~~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~------------~P~---~----~~~~---~~~~yYSf~~G~ 339 (570)
+.|..+ -.-++++||||+.... ..+..+..... +|- | ..+. ....|.-++.++
T Consensus 718 ~~ln~l---g~d~~~~GNHEfd~g~--~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G 792 (1163)
T PRK09419 718 KMMKEM---GYDASTFGNHEFDWGP--DVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNG 792 (1163)
T ss_pred HHHhCc---CCCEEEecccccccCh--HHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECC
Confidence 333332 2235699999996432 22222221111 111 0 0111 123466677887
Q ss_pred EE--EEEeecCc-CC-C-----C---CHHHHHHHHHHHhccc-cCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHH
Q 008312 340 IH--FLMLAAYV-SF-D-----K---SGDQYKWLEEDLANVE-REVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLL 406 (570)
Q Consensus 340 v~--fI~Ldt~~-~~-~-----~---~~~Q~~WLe~~L~~~~-r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll 406 (570)
++ ||.+-+.. .. . . -....+.+++..++.. ..+...+|++.|......... .+ ....+|.
T Consensus 793 ~kIgiiGltt~~~~~~~~p~~~~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~--~~-----~~~~~lA 865 (1163)
T PRK09419 793 KKVGFIGLTTPETAYKTSPGNVKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTT--GE-----ITGLELA 865 (1163)
T ss_pred EEEEEEEecccccccccCCCCcCCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCccccccc--cc-----cHHHHHH
Confidence 55 55554321 00 0 0 1122333444444433 245778999999886532111 11 1122344
Q ss_pred HHc-CCeEEEEccccccee
Q 008312 407 YKY-GVDVVFNGHQVHAYE 424 (570)
Q Consensus 407 ~~y-~VdlvlsGH~~H~Ye 424 (570)
++. +||++|.|| .|..-
T Consensus 866 ~~v~gIDvIigGH-sH~~~ 883 (1163)
T PRK09419 866 KKVKGVDAIISAH-THTLV 883 (1163)
T ss_pred HhCCCCCEEEeCC-CCccc
Confidence 433 699999999 99654
No 70
>PRK04036 DNA polymerase II small subunit; Validated
Probab=97.91 E-value=6.9e-05 Score=83.15 Aligned_cols=202 Identities=19% Similarity=0.214 Sum_probs=100.8
Q ss_pred CCeEEEEEecCCCCCCh------HHHHHHHH---------hCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCccc
Q 008312 207 YPSRIAIVGDVGLTYNT------TSTVSHMI---------SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHE 271 (570)
Q Consensus 207 ~~~rf~vigD~g~~~~~------~~~i~~l~---------~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e 271 (570)
.++++++++|+|.+... ...++.+. +.+++.+|++||++...+... +.. .+.....
T Consensus 242 ~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p-~~~--------~~~~~~~ 312 (504)
T PRK04036 242 EKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYP-GQE--------EELEIVD 312 (504)
T ss_pred CccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCc-cch--------hhccchh
Confidence 46899999999987542 12334444 457999999999995321100 000 0000011
Q ss_pred chHHHHHHHHHhhhhhhccCCeEEeccCccccccccc--hhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCc
Q 008312 272 TYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAEN--RTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYV 349 (570)
Q Consensus 272 ~Y~~~wd~~~~~l~~l~~~iP~~~v~GNHD~~~~~~~--~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~ 349 (570)
.+ .+++.+.++++.+...+|+++++||||....... .-...|...+.... .....+ -+.+.+++.++++.....
T Consensus 313 ~~-~~~~~l~~~L~~L~~~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~~~--v~~lsN-P~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 313 IY-EQYEAAAEYLKQIPEDIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPEHN--VTFVSN-PALVNLHGVDVLIYHGRS 388 (504)
T ss_pred hH-HHHHHHHHHHHhhhcCCeEEEecCCCcchhhccCCCCccHHHHHhcCcCC--eEEecC-CeEEEECCEEEEEECCCC
Confidence 11 1234556667777778999999999998532110 01112222221100 000112 235777888887775421
Q ss_pred -----CCC---CCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEccccc
Q 008312 350 -----SFD---KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVH 421 (570)
Q Consensus 350 -----~~~---~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H 421 (570)
.+. ....-.+.|++.|.... -+| ..-.+.|.|.... + ++..+.-.|++++|| .|
T Consensus 389 idDl~~~i~~~s~~~p~~~m~~~l~~rH--laP--t~p~~~~~~p~~~-D------------~lvi~~~Pdv~~~GH-~H 450 (504)
T PRK04036 389 IDDVISLIPGASYEKPGKAMEELLKRRH--LAP--IYGGRTPIAPEKE-D------------YLVIDEVPDIFHTGH-VH 450 (504)
T ss_pred HHHHHhhcccccccCHHHHHHHHHHhcc--cCC--CCCCCEEeCcCCC-C------------CEEEecCCCEEEeCC-CC
Confidence 111 11223455666665411 010 0001122222110 0 111112369999999 99
Q ss_pred ceeeeeccccCccCCCCcEEEEECCC
Q 008312 422 AYERSNRVYNYTLDPCGPVHITVGDG 447 (570)
Q Consensus 422 ~YeR~~pv~n~~~~~~g~vyiv~G~g 447 (570)
.+.... -.|+.+|..|+-
T Consensus 451 ~~~~~~--------~~g~~~IN~gsf 468 (504)
T PRK04036 451 INGYGK--------YRGVLLINSGTW 468 (504)
T ss_pred ccceEE--------ECCEEEEECCcc
Confidence 876542 246777766664
No 71
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.88 E-value=3.2e-05 Score=76.17 Aligned_cols=189 Identities=19% Similarity=0.271 Sum_probs=96.4
Q ss_pred EEecCCCCCChHH---HHHHHHh-C--CCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhh
Q 008312 213 IVGDVGLTYNTTS---TVSHMIS-N--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQP 286 (570)
Q Consensus 213 vigD~g~~~~~~~---~i~~l~~-~--~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~ 286 (570)
+++|+|.+..... .+-..++ . +.|.+.++||++. .| -|.. . +.+.-++..+.+..
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd--~w--~g~~-----------~----~~~~~~~V~~~l~~ 62 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFD--GW--IGDD-----------E----PPQLHRQVAQKLLR 62 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhh--hh--hcCC-----------c----ccHHHHHHHHHHHH
Confidence 6899999844322 2333333 3 4599999999994 33 1210 0 00111222222333
Q ss_pred h-hccCCeEEeccCccccccccchhhhhhhcccC-CCCCCCCCCCcceEEEEeCeEEEEEeecCcCCCCCHHHHHHHHHH
Q 008312 287 V-LSKVPIMVVEGNHEYEEQAENRTFVAYTSRFA-FPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLEED 364 (570)
Q Consensus 287 l-~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~-~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~~~~~~~~Q~~WLe~~ 364 (570)
+ ....|++.++||||+.-. ..+...+. + ...+.+--+++-+-+++++-.- .+.....++.|+...
T Consensus 63 ~a~~G~~v~~i~GN~Dfll~------~~f~~~~g~~------~l~~~~~~~~l~g~~~Ll~HGD-~f~t~~~~y~~~r~~ 129 (237)
T COG2908 63 LARKGTRVYYIHGNHDFLLG------KRFAQEAGGM------TLLPDPIVLDLYGKRILLAHGD-TFCTDDRAYQWFRYK 129 (237)
T ss_pred HHhcCCeEEEecCchHHHHH------HHHHhhcCce------EEcCcceeeeecCcEEEEEeCC-cccchHHHHHHHHHH
Confidence 3 456999999999997421 11222221 0 0011222344444455555432 133445666666554
Q ss_pred HhccccCCCCEE-EEEeCCCcc----------c-c--CCCcccch----HHHHHHHHHHHHHcCCeEEEEcccccceeee
Q 008312 365 LANVEREVTPWL-VATWHAPWY----------S-T--YKAHYREA----ECMRVAMEDLLYKYGVDVVFNGHQVHAYERS 426 (570)
Q Consensus 365 L~~~~r~~~pwi-IV~~H~P~y----------~-s--~~~~~~~~----~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~ 426 (570)
... +|. .++.+.|.. + + ....-... +.+.+...+.+++++||.+++|| +|.-.-.
T Consensus 130 ~~~------~~~~~lflnl~l~~R~ri~~k~r~~s~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH-~Hr~ai~ 202 (237)
T COG2908 130 VHW------AWLQLLFLNLPLRVRRRIAYKIRSLSSWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGH-THRPAIH 202 (237)
T ss_pred ccc------HHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecC-cccHhhc
Confidence 322 121 112222221 0 1 00000011 12345667788999999999999 9965433
Q ss_pred eccccCccCCCCcEEEEECCCC
Q 008312 427 NRVYNYTLDPCGPVHITVGDGG 448 (570)
Q Consensus 427 ~pv~n~~~~~~g~vyiv~G~gG 448 (570)
. -.++.||+.|+..
T Consensus 203 ~--------i~~~~yi~lGdW~ 216 (237)
T COG2908 203 N--------IPGITYINLGDWV 216 (237)
T ss_pred c--------CCCceEEecCcch
Confidence 1 2468999999988
No 72
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.87 E-value=3.9e-05 Score=77.67 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=48.0
Q ss_pred eEEEEEecCCCCCCh---------H----HHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHH
Q 008312 209 SRIAIVGDVGLTYNT---------T----STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQP 275 (570)
Q Consensus 209 ~rf~vigD~g~~~~~---------~----~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~ 275 (570)
+||++++|+|.+... . ..++.+.+.++|+||++||++... . +. ..
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~------~------------p~----~~ 58 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTA------N------------PP----AE 58 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCC------C------------CC----HH
Confidence 589999999986421 1 233444467899999999999531 1 00 11
Q ss_pred HHHHHHHhhhhhhc-c-CCeEEeccCcccc
Q 008312 276 RWDYWGRYMQPVLS-K-VPIMVVEGNHEYE 303 (570)
Q Consensus 276 ~wd~~~~~l~~l~~-~-iP~~~v~GNHD~~ 303 (570)
....+.++++.+.. . +|+++++||||..
T Consensus 59 ~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~ 88 (253)
T TIGR00619 59 AQELFNAFFRNLSDANPIPIVVISGNHDSA 88 (253)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEccCCCCh
Confidence 22334455555532 3 8999999999985
No 73
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=97.81 E-value=0.00024 Score=71.40 Aligned_cols=83 Identities=18% Similarity=0.282 Sum_probs=48.0
Q ss_pred EEEecCCCCCCh--HH----HHHHHHhC-----CCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHH
Q 008312 212 AIVGDVGLTYNT--TS----TVSHMISN-----RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYW 280 (570)
Q Consensus 212 ~vigD~g~~~~~--~~----~i~~l~~~-----~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~ 280 (570)
++++|+|..... .. .++.+... ++|.||++||++...... .+.. .....+.....+..+
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~-~~~~---------~~~~~~~~~~~~~~~ 71 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVY-PGQE---------EELEILDIYEQYEEA 71 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccC-Ccch---------hhhhhhhHHHHHHHH
Confidence 689999976432 12 22333222 569999999999531100 0000 000000111234556
Q ss_pred HHhhhhhhccCCeEEeccCccccc
Q 008312 281 GRYMQPVLSKVPIMVVEGNHEYEE 304 (570)
Q Consensus 281 ~~~l~~l~~~iP~~~v~GNHD~~~ 304 (570)
.++++.+...+|+++++||||...
T Consensus 72 ~~~l~~L~~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 72 AEYLSDVPSHIKIIIIPGNHDAVR 95 (243)
T ss_pred HHHHHhcccCCeEEEeCCCCCccc
Confidence 677777877899999999999853
No 74
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.80 E-value=0.00043 Score=71.35 Aligned_cols=51 Identities=22% Similarity=0.243 Sum_probs=29.0
Q ss_pred CCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEccccccee
Q 008312 371 EVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYE 424 (570)
Q Consensus 371 ~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~Ye 424 (570)
.+..-+|++.|-.............+ ...+.+.+...++|++|.|| .|...
T Consensus 172 ~~~D~VI~lsH~G~~~~~~~~~~~~~--~~~lA~~~~~~giD~IigGH-sH~~~ 222 (285)
T cd07405 172 EKPDIVIAATHMGHYDNGEHGSNAPG--DVEMARALPAGGLDLIVGGH-SQDPV 222 (285)
T ss_pred cCCCEEEEEecccccCCccccccCch--HHHHHHhcCCCCCCEEEeCC-CCccc
Confidence 35677999999887542210000000 11222222235899999999 99754
No 75
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.74 E-value=3.5e-05 Score=75.49 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=24.6
Q ss_pred EEEEEecCCCCCChH-HHHHHHHh-CCCCEEEEcCCccc
Q 008312 210 RIAIVGDVGLTYNTT-STVSHMIS-NRPDLILLVGDVTY 246 (570)
Q Consensus 210 rf~vigD~g~~~~~~-~~i~~l~~-~~pDfvl~~GDl~Y 246 (570)
||+++||+|...... ..++.+.. .++|.++++||+++
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~ 40 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLID 40 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCccc
Confidence 789999999653221 12222221 35899999999995
No 76
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=97.72 E-value=0.00024 Score=75.45 Aligned_cols=116 Identities=17% Similarity=0.360 Sum_probs=68.1
Q ss_pred CeEEEEEecCCCCCChH------------------HHHHHHH-hCCCCEEEEcCCcccccccccCCCCCCcccccCCCCC
Q 008312 208 PSRIAIVGDVGLTYNTT------------------STVSHMI-SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSP 268 (570)
Q Consensus 208 ~~rf~vigD~g~~~~~~------------------~~i~~l~-~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~ 268 (570)
++|++.++|.|.-.+.. ..+..+. ..+||.++++||+... |...
T Consensus 48 ~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDe------G~~~----------- 110 (410)
T KOG3662|consen 48 STKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDE------GQWA----------- 110 (410)
T ss_pred ceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEecccccc------CccC-----------
Confidence 79999999998754211 1111111 2599999999999963 2211
Q ss_pred cccchHHHHHHHHHhhhhhhccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecC
Q 008312 269 IHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAY 348 (570)
Q Consensus 269 ~~e~Y~~~wd~~~~~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~ 348 (570)
..|.++.+.+++.+.+.. ..+++.+.++||||++... +.......||.- ..++...+|+.|+.-|+++|++
T Consensus 111 ~~eEf~~~~~RfkkIf~~-k~~~~~~~i~GNhDIGf~~--~~~~~~i~Rfe~------~fg~~~r~f~v~~~tf~~~d~~ 181 (410)
T KOG3662|consen 111 GDEEFKKRYERFKKIFGR-KGNIKVIYIAGNHDIGFGN--ELIPEWIDRFES------VFGPTERRFDVGNLTFVMFDSN 181 (410)
T ss_pred ChHHHHHHHHHHHHhhCC-CCCCeeEEeCCcccccccc--ccchhHHHHHHH------hhcchhhhhccCCceeEEeeeh
Confidence 112222222333222221 3579999999999997432 111222233310 0123566799999999999986
Q ss_pred c
Q 008312 349 V 349 (570)
Q Consensus 349 ~ 349 (570)
.
T Consensus 182 ~ 182 (410)
T KOG3662|consen 182 A 182 (410)
T ss_pred h
Confidence 4
No 77
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.70 E-value=6.9e-05 Score=73.62 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCeEEEEcccccceee
Q 008312 401 AMEDLLYKYGVDVVFNGHQVHAYER 425 (570)
Q Consensus 401 ~l~~ll~~y~VdlvlsGH~~H~YeR 425 (570)
.++.+|..++.++++.|| +|.-..
T Consensus 158 ~~~~~l~~~~~~~iv~GH-Th~~~~ 181 (208)
T cd07425 158 HLDKVLERLGAKRMVVGH-TPQEGG 181 (208)
T ss_pred HHHHHHHHcCCCeEEEcC-eeeecC
Confidence 577889999999999999 997544
No 78
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.69 E-value=0.00011 Score=79.43 Aligned_cols=74 Identities=22% Similarity=0.372 Sum_probs=46.9
Q ss_pred eEEEEEecCCCCCCh-------------HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHH
Q 008312 209 SRIAIVGDVGLTYNT-------------TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQP 275 (570)
Q Consensus 209 ~rf~vigD~g~~~~~-------------~~~i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~ 275 (570)
+||++++|+|.+... ...++.+.+.+||+||++||++.. +. + .. .
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~------~~------------p--~~--~ 58 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDT------GS------------P--PS--Y 58 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccC------CC------------C--cH--H
Confidence 589999999986321 123344456799999999999842 11 0 00 1
Q ss_pred HHHHHHHhhhhhh-ccCCeEEeccCccccc
Q 008312 276 RWDYWGRYMQPVL-SKVPIMVVEGNHEYEE 304 (570)
Q Consensus 276 ~wd~~~~~l~~l~-~~iP~~~v~GNHD~~~ 304 (570)
....+.+++..+. ..+|+++++||||...
T Consensus 59 a~~~~~~~l~~L~~~~~~v~~I~GNHD~~~ 88 (407)
T PRK10966 59 ARELYNRFVVNLQQTGCQLVVLAGNHDSVA 88 (407)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCCCChh
Confidence 1122334444442 3589999999999853
No 79
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.67 E-value=0.00038 Score=65.87 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=14.0
Q ss_pred cCCeEEEEcccccceeee
Q 008312 409 YGVDVVFNGHQVHAYERS 426 (570)
Q Consensus 409 y~VdlvlsGH~~H~YeR~ 426 (570)
.+.|++++|| +|..+..
T Consensus 124 ~~~d~vi~GH-tH~~~~~ 140 (168)
T cd07390 124 DRGSWNLHGH-IHSNSPD 140 (168)
T ss_pred CCCeEEEEee-eCCCCCC
Confidence 4679999999 9987665
No 80
>PHA02546 47 endonuclease subunit; Provisional
Probab=97.66 E-value=0.00012 Score=77.25 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=46.1
Q ss_pred eEEEEEecCCCCCCh---------HHH----HHHHHhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHH
Q 008312 209 SRIAIVGDVGLTYNT---------TST----VSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQP 275 (570)
Q Consensus 209 ~rf~vigD~g~~~~~---------~~~----i~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~ 275 (570)
+||+++||+|.+... ... ++.+.+.+||+||++||++.... . +. ..
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~----~-------------~~----~~ 59 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRK----A-------------IT----QN 59 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCC----C-------------CC----HH
Confidence 589999999987321 123 33445679999999999984310 0 00 11
Q ss_pred HHHHHHH-hhhhh-hccCCeEEeccCcccc
Q 008312 276 RWDYWGR-YMQPV-LSKVPIMVVEGNHEYE 303 (570)
Q Consensus 276 ~wd~~~~-~l~~l-~~~iP~~~v~GNHD~~ 303 (570)
......+ +++.+ ...+|+++++||||..
T Consensus 60 ~~~~~~~~l~~~L~~~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 60 TMNFVREKIFDLLKEAGITLHVLVGNHDMY 89 (340)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEccCCCcc
Confidence 1121222 23334 2469999999999974
No 81
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.51 E-value=0.0015 Score=73.59 Aligned_cols=186 Identities=18% Similarity=0.195 Sum_probs=89.6
Q ss_pred CCeEEEEEecCCCCCC-------h----HHHHHHHHhC----CC-CEEEEcCCcccccccccCCCCCCcccccCCCCCcc
Q 008312 207 YPSRIAIVGDVGLTYN-------T----TSTVSHMISN----RP-DLILLVGDVTYANLYLTNGTGSDCYACSFANSPIH 270 (570)
Q Consensus 207 ~~~rf~vigD~g~~~~-------~----~~~i~~l~~~----~p-Dfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~ 270 (570)
..++|++++|+|.... . ...++++.+. .+ -++|..||+...... .
T Consensus 33 ~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~-------------------s 93 (551)
T PRK09558 33 YKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPE-------------------S 93 (551)
T ss_pred eEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEh-------------------h
Confidence 4799999999997632 1 1233444321 33 478899999853211 0
Q ss_pred cchHHHHHHHHHhhhhhhccCCeEEeccCccccccccchhhhhhhcccCCCC---C----CCC-CCCcceEEEEeCeEE-
Q 008312 271 ETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPS---K----ESG-SLSKFYYSFNAGGIH- 341 (570)
Q Consensus 271 e~Y~~~wd~~~~~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~---~----~~~-~~~~~yYSf~~G~v~- 341 (570)
..+ ......+.|..+ .+- ..++||||+.... ..+..+.....+|- + ..+ ..-..|.-++.++++
T Consensus 94 ~~~--~g~~~i~~mN~~--g~D-a~tlGNHEFD~G~--~~L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kI 166 (551)
T PRK09558 94 DLQ--DAEPDFRGMNLI--GYD-AMAVGNHEFDNPL--SVLRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKI 166 (551)
T ss_pred hhc--CCchhHHHHhcC--CCC-EEcccccccCcCH--HHHHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEE
Confidence 000 001112333332 222 4567999997532 23333333333332 1 001 112346667888855
Q ss_pred -EEEeecCcC--C-C----C---CHHHHHHHHHHHhcccc-CCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHc
Q 008312 342 -FLMLAAYVS--F-D----K---SGDQYKWLEEDLANVER-EVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKY 409 (570)
Q Consensus 342 -fI~Ldt~~~--~-~----~---~~~Q~~WLe~~L~~~~r-~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y 409 (570)
||.+-+... + . . -....+-+++.+++... .+..-+|++.|.......... .... .-..+.++.
T Consensus 167 giiG~~t~~~~~~~~~~~~~~~~f~d~~e~a~~~v~~Lk~~~~~D~IV~LsH~G~~~~~~~~-~~~~----~d~~la~~~ 241 (551)
T PRK09558 167 AVIGLTTEDTAKIGNPEYFTDIEFRDPAEEAKKVIPELKQTEKPDVIIALTHMGHYDDGEHG-SNAP----GDVEMARSL 241 (551)
T ss_pred EEEEEeccccccccCCCCcCCceECCHHHHHHHHHHHHHhccCCCEEEEEeccccccCCccC-CCCc----cHHHHHHhC
Confidence 455433210 0 0 0 01112223333333321 357789999998875321110 0000 002334443
Q ss_pred ---CCeEEEEccccccee
Q 008312 410 ---GVDVVFNGHQVHAYE 424 (570)
Q Consensus 410 ---~VdlvlsGH~~H~Ye 424 (570)
+||++|.|| .|..-
T Consensus 242 ~~~~IDvIlgGH-sH~~~ 258 (551)
T PRK09558 242 PAGGLDMIVGGH-SQDPV 258 (551)
T ss_pred CccCceEEEeCC-CCccc
Confidence 799999999 99753
No 82
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=97.48 E-value=0.00044 Score=64.34 Aligned_cols=50 Identities=18% Similarity=0.026 Sum_probs=31.3
Q ss_pred EEEEeCCCccccCC-Cccc----chHHHHHHHHHHHHHcCCeEEEEccccc-ceeee
Q 008312 376 LVATWHAPWYSTYK-AHYR----EAECMRVAMEDLLYKYGVDVVFNGHQVH-AYERS 426 (570)
Q Consensus 376 iIV~~H~P~y~s~~-~~~~----~~~~~r~~l~~ll~~y~VdlvlsGH~~H-~YeR~ 426 (570)
-|++.|.|++.... .... ....-...+.+++++.+....|||| .| .|||-
T Consensus 71 DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~~~lkPrYhf~gh-~~~fyer~ 126 (150)
T cd07380 71 DILLTSEWPKGISKLSKVPFEETLLICGSDLIAELAKKLKPRYHFAGL-EGVFYERE 126 (150)
T ss_pred CEEECCCCchhhhhhCCCcccccccCCCCHHHHHHHHHcCCCeEeecC-CCceEeec
Confidence 47777877765421 1000 0001124566788899999999999 99 67774
No 83
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.47 E-value=0.002 Score=72.54 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=57.3
Q ss_pred EEeccCccccccccchhhhhhhcccCCCC---C---CCC----CCCcceEEEEeCe--EEEEEeecCcC-C---CCC---
Q 008312 294 MVVEGNHEYEEQAENRTFVAYTSRFAFPS---K---ESG----SLSKFYYSFNAGG--IHFLMLAAYVS-F---DKS--- 354 (570)
Q Consensus 294 ~~v~GNHD~~~~~~~~~~~~y~~~f~~P~---~---~~~----~~~~~yYSf~~G~--v~fI~Ldt~~~-~---~~~--- 354 (570)
..++||||+... ...+..+.....+|- + ... .....|.-++.++ |-||.|.+... . ...
T Consensus 85 a~~lGNHEFd~G--~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~ 162 (550)
T TIGR01530 85 FFTLGNHEFDAG--NEGLKEFLEPLEIPVLSANVIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDI 162 (550)
T ss_pred EEEeccccccCC--HHHHHHHHHhCCCCEEEEeeecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCce
Confidence 678999999643 233333333333332 0 000 1123466677887 56677754210 0 010
Q ss_pred --HHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHH-cCCeEEEEccccccee
Q 008312 355 --GDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVVFNGHQVHAYE 424 (570)
Q Consensus 355 --~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-y~VdlvlsGH~~H~Ye 424 (570)
....+=+++..++..+.+..-+|++.|..... . ..+.++ -+||++|.|| .|.+-
T Consensus 163 ~f~d~~~~~~~~v~~Lk~~g~D~II~lsH~g~~~--------d-------~~la~~~~~iD~IigGH-sH~~~ 219 (550)
T TIGR01530 163 KFIDEIAAAQIAANALKQQGINKIILLSHAGFEK--------N-------CEIAQKINDIDVIVSGD-SHYLL 219 (550)
T ss_pred EECCHHHHHHHHHHHHHhCCCCEEEEEecCCcHH--------H-------HHHHhcCCCCCEEEeCC-CCccc
Confidence 01112122222222224567799999965321 1 123333 3799999999 99853
No 84
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.46 E-value=0.0021 Score=71.77 Aligned_cols=185 Identities=15% Similarity=0.145 Sum_probs=98.3
Q ss_pred CCeEEEEEecCCCCCC------------hH----HHHHHHHhC-CCCEEEEcCCcccccccccCCCCCCcccccCCCCCc
Q 008312 207 YPSRIAIVGDVGLTYN------------TT----STVSHMISN-RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPI 269 (570)
Q Consensus 207 ~~~rf~vigD~g~~~~------------~~----~~i~~l~~~-~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~ 269 (570)
..++|+...|+|.... .. ..++++.+. +..++|.+||++..+...+.
T Consensus 25 ~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~---------------- 88 (517)
T COG0737 25 VKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDY---------------- 88 (517)
T ss_pred eeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCcccccc----------------
Confidence 4799999999997533 11 123444443 44689999999964321110
Q ss_pred ccchHHHHHHHHHhhhhhhccCCeEEeccCccccccccchhhhhhhcccCCCC---C---C---CCCCCcceEEEEeCeE
Q 008312 270 HETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPS---K---E---SGSLSKFYYSFNAGGI 340 (570)
Q Consensus 270 ~e~Y~~~wd~~~~~l~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~---~---~---~~~~~~~yYSf~~G~v 340 (570)
......-.+.|..+. .=..++||||+... .+.+..+.....+|- | . .....+-|.-++.+++
T Consensus 89 ----~~~g~~~~~~mN~m~---yDa~tiGNHEFd~g--~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~ 159 (517)
T COG0737 89 ----LTKGEPTVDLLNALG---YDAMTLGNHEFDYG--LEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGV 159 (517)
T ss_pred ----ccCCChHHHHHhhcC---CcEEeecccccccC--HHHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCe
Confidence 011111223333321 22578899999743 233444444444441 0 1 1122356788888875
Q ss_pred E--EEEeecCc--CCC--------CCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHH
Q 008312 341 H--FLMLAAYV--SFD--------KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK 408 (570)
Q Consensus 341 ~--fI~Ldt~~--~~~--------~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~ 408 (570)
+ +|.+-+.. .+. .-....+++++.+.+..+....-+|++.|-+........... ........
T Consensus 160 KIgiIG~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~~-~~~~~~~~----- 233 (517)
T COG0737 160 KIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASEV-PGDVDVAV----- 233 (517)
T ss_pred EEEEEEecCCcccccccccccCCcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCccccccccc-cccccccc-----
Confidence 4 55555311 011 112455666666666554446779999999876532111000 00000000
Q ss_pred cCCeEEEEcccccce
Q 008312 409 YGVDVVFNGHQVHAY 423 (570)
Q Consensus 409 y~VdlvlsGH~~H~Y 423 (570)
.++|+++.|| .|.+
T Consensus 234 ~~iD~i~~GH-~H~~ 247 (517)
T COG0737 234 PGIDLIIGGH-SHTV 247 (517)
T ss_pred cCcceEeccC-Cccc
Confidence 4499999999 9953
No 85
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=97.36 E-value=0.0018 Score=66.82 Aligned_cols=182 Identities=21% Similarity=0.274 Sum_probs=102.7
Q ss_pred eEEEEEecCCCCCC-hHHHHHHHHhC---CCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhh
Q 008312 209 SRIAIVGDVGLTYN-TTSTVSHMISN---RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYM 284 (570)
Q Consensus 209 ~rf~vigD~g~~~~-~~~~i~~l~~~---~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l 284 (570)
+||+|-|++|...+ ...++..+.+. ++|++|.+||+--- .|+....|- .+...|+.. ..|.++.
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQav----Rn~~D~~si-------avPpKy~~m-~~F~~YY 68 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAV----RNEQDLKSI-------AVPPKYRRM-GDFYKYY 68 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhh----cchhhcccc-------cCCHHHHHH-HHHHHHh
Confidence 58999999997643 34456666554 89999999998532 123221111 122334322 2333332
Q ss_pred -hhhhccCCeEEeccCccccccccchhhhhhhcccCCCCCCCCCCCcceE-----EEEeCeEEEEEeec---CcCCCCC-
Q 008312 285 -QPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYY-----SFNAGGIHFLMLAA---YVSFDKS- 354 (570)
Q Consensus 285 -~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yY-----Sf~~G~v~fI~Ldt---~~~~~~~- 354 (570)
..+.+.+|.+++-||||..+ |.. .+|..+ ....+.|| ...+|+||+-.|.. +.+|..+
T Consensus 69 sge~~APVlTIFIGGNHEAsn---------yL~--eLpyGG-wVApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh 136 (456)
T KOG2863|consen 69 SGEIKAPVLTIFIGGNHEASN---------YLQ--ELPYGG-WVAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGH 136 (456)
T ss_pred CCcccCceeEEEecCchHHHH---------HHH--hcccCc-eeccceEEeeecceEEECCEEEeeccchhhhhhcccCC
Confidence 34567799999999999842 221 223211 12245666 36689999998876 2333221
Q ss_pred ----------------HHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHH-----------------HHH
Q 008312 355 ----------------GDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECM-----------------RVA 401 (570)
Q Consensus 355 ----------------~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~-----------------r~~ 401 (570)
-.+.+ ...|++. +.|-=|+.+|.=+-.- .++++...+ ...
T Consensus 137 ~E~ppyn~stiRsiYHvR~~d--V~~Lkql---k~piDIfLSHDWP~GI--~~yGd~~~LLr~KPFFrqeie~~~LGSp~ 209 (456)
T KOG2863|consen 137 FEWPPYNNSTIRSIYHVRISD--VAKLKQL---KHPIDIFLSHDWPRGI--YYYGDKKQLLRLKPFFRQEIEEGKLGSPA 209 (456)
T ss_pred CCCCCccchhhhhhhhhhhhh--hHHHHhh---cCcceEEeecCCCcch--hhcCCHHHHHhcCcHHHHHHhcCCcCChH
Confidence 11111 1123332 2344577778533221 122222211 246
Q ss_pred HHHHHHHcCCeEEEEcccccc
Q 008312 402 MEDLLYKYGVDVVFNGHQVHA 422 (570)
Q Consensus 402 l~~ll~~y~VdlvlsGH~~H~ 422 (570)
+++||++.+...+|+.| .|.
T Consensus 210 ~~eLL~~LkP~yWfsAH-LH~ 229 (456)
T KOG2863|consen 210 LEELLEDLKPQYWFSAH-LHV 229 (456)
T ss_pred HHHHHHHhCcchhhhhh-Hhh
Confidence 78999999999999999 995
No 86
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.21 E-value=0.0028 Score=66.22 Aligned_cols=39 Identities=15% Similarity=0.081 Sum_probs=24.8
Q ss_pred eEEEEEecCCCCCC----h---HHHHHHHHhC----C-CCEEEEcCCcccc
Q 008312 209 SRIAIVGDVGLTYN----T---TSTVSHMISN----R-PDLILLVGDVTYA 247 (570)
Q Consensus 209 ~rf~vigD~g~~~~----~---~~~i~~l~~~----~-pDfvl~~GDl~Y~ 247 (570)
++|++.+|+|.... . ...++++.+. . .-++|.+||+...
T Consensus 1 l~IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qG 51 (313)
T cd08162 1 LQLLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIP 51 (313)
T ss_pred CeEEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccC
Confidence 47899999997632 1 1234444332 3 3488999999853
No 87
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.15 E-value=0.00081 Score=63.89 Aligned_cols=51 Identities=16% Similarity=0.421 Sum_probs=32.3
Q ss_pred HhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhhhhccCCeEEeccCcccc
Q 008312 231 ISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE 303 (570)
Q Consensus 231 ~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~iP~~~v~GNHD~~ 303 (570)
.+.+||.||++||+++... +. . ...+.... .+......+|+++++||||..
T Consensus 38 ~~~~~d~lii~GDl~~~~~----~~----------------~-~~~~~~~~-~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 38 EEYGPERLIILGDLKHSFG----GL----------------S-RQEFEEVA-FLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred HhcCCCEEEEeCccccccc----cc----------------C-HHHHHHHH-HHHhccCCCeEEEEcccCccc
Confidence 3568999999999996421 10 0 11222211 233335678999999999984
No 88
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.87 E-value=0.025 Score=65.97 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=32.7
Q ss_pred HHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccce
Q 008312 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAY 423 (570)
Q Consensus 359 ~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~Y 423 (570)
+.+++...+....++.-+|++.|.-+......... +... ..|-.--+||++|.|| .|..
T Consensus 296 eaa~~~v~~Lr~~GaDvIIaLsH~G~~~d~~~~~~--En~~---~~LA~v~GIDaIvgGH-sH~~ 354 (814)
T PRK11907 296 EAVRDIIPTMRAAGADIVLVLSHSGIGDDQYEVGE--ENVG---YQIASLSGVDAVVTGH-SHAE 354 (814)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCCcccccccccc--cchh---hHHhcCCCCCEEEECC-CCCc
Confidence 33444444433345778999999876432111111 1111 1222235799999999 9974
No 89
>PHA02239 putative protein phosphatase
Probab=96.87 E-value=0.0022 Score=64.27 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=41.8
Q ss_pred eEEEEEecCCCCCCh-HHHHHHHHhC--CCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhh
Q 008312 209 SRIAIVGDVGLTYNT-TSTVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQ 285 (570)
Q Consensus 209 ~rf~vigD~g~~~~~-~~~i~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~ 285 (570)
+|++++||+|..... .+.++.+... ..|.++++||++.. |.. .. +....+++
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDr------G~~------------------s~-~v~~~l~~ 55 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDR------GKR------------------SK-DVVNYIFD 55 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCC------CCC------------------hH-HHHHHHHH
Confidence 478999999965322 2334444332 25999999999953 321 00 11222222
Q ss_pred hhhccCCeEEeccCcccc
Q 008312 286 PVLSKVPIMVVEGNHEYE 303 (570)
Q Consensus 286 ~l~~~iP~~~v~GNHD~~ 303 (570)
.+....++++++||||..
T Consensus 56 ~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 56 LMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred HhhcCCCeEEEECCcHHH
Confidence 223345789999999973
No 90
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=96.74 E-value=0.021 Score=52.66 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=25.5
Q ss_pred EEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccc
Q 008312 376 LVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHA 422 (570)
Q Consensus 376 iIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~ 422 (570)
.|+.+|.|.-... +.+ ........+.++++.+.|| .|+
T Consensus 110 ~~~LsHyP~~~~~--~~~------~~~r~~y~~~~~~llIHGH-~H~ 147 (186)
T COG4186 110 DVYLSHYPRPGQD--HPG------MESRFDYLRLRVPLLIHGH-LHS 147 (186)
T ss_pred EEEEEeCCCCCCC--Ccc------hhhhHHHHhccCCeEEecc-ccc
Confidence 6889999975532 211 1122344556899999999 998
No 91
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=96.67 E-value=0.0028 Score=64.90 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=41.6
Q ss_pred eEEEEEecCCCCCChH-HHHHHHH-hCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhh
Q 008312 209 SRIAIVGDVGLTYNTT-STVSHMI-SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQP 286 (570)
Q Consensus 209 ~rf~vigD~g~~~~~~-~~i~~l~-~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~ 286 (570)
++++++||+|.....- ..++++. +.+.|.++++||++.. |.. + .+..+++..
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdr------Gp~------------------s--~~vl~~l~~ 54 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNR------GPD------------------S--LEVLRFVKS 54 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCC------CcC------------------H--HHHHHHHHh
Confidence 4689999999764332 2333332 2368999999999953 321 0 122233333
Q ss_pred hhccCCeEEeccCcccc
Q 008312 287 VLSKVPIMVVEGNHEYE 303 (570)
Q Consensus 287 l~~~iP~~~v~GNHD~~ 303 (570)
+ ..++.+|.||||..
T Consensus 55 l--~~~~~~VlGNHD~~ 69 (275)
T PRK00166 55 L--GDSAVTVLGNHDLH 69 (275)
T ss_pred c--CCCeEEEecChhHH
Confidence 2 34688999999973
No 92
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.67 E-value=0.029 Score=68.71 Aligned_cols=58 Identities=24% Similarity=0.312 Sum_probs=34.0
Q ss_pred HHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHH-cCCeEEEEcccccceee
Q 008312 362 EEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVVFNGHQVHAYER 425 (570)
Q Consensus 362 e~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-y~VdlvlsGH~~H~YeR 425 (570)
++.+.+..+.++..+|++.|............ + ....+|.++ -+||++|.|| .|....
T Consensus 224 ~~~v~~lk~~gaDvII~l~H~G~~~~~~~~~~--e---n~~~~la~~~~gID~Il~GH-sH~~~~ 282 (1163)
T PRK09419 224 NKTIPEMKKGGADVIVALAHSGIESEYQSSGA--E---DSVYDLAEKTKGIDAIVAGH-QHGLFP 282 (1163)
T ss_pred HHHHHHHHhcCCCEEEEEeccCcCCCCCCCCc--c---hHHHHHHHhCCCCcEEEeCC-Cccccc
Confidence 33333333346778999999886543211111 1 222344444 4799999999 997643
No 93
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.59 E-value=0.0055 Score=60.98 Aligned_cols=70 Identities=14% Similarity=0.384 Sum_probs=45.3
Q ss_pred eEEEEEecCCCCCCh--------------HHHHHHHH----hCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcc
Q 008312 209 SRIAIVGDVGLTYNT--------------TSTVSHMI----SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIH 270 (570)
Q Consensus 209 ~rf~vigD~g~~~~~--------------~~~i~~l~----~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~ 270 (570)
-+.++++|+|.+... .++++++. +.+||.||++||+...... +
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~---~---------------- 75 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKK---G---------------- 75 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCC---h----------------
Confidence 367899999987421 13444443 3579999999999964210 0
Q ss_pred cchHHHHHHHHHhhhhhhccCCeEEeccCcccc
Q 008312 271 ETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE 303 (570)
Q Consensus 271 e~Y~~~wd~~~~~l~~l~~~iP~~~v~GNHD~~ 303 (570)
..|..+.++++.+ ..+++.++||||..
T Consensus 76 ----~~~~~~~~~l~~~--~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 76 ----LEWRFIREFIEVT--FRDLILIRGNHDAL 102 (225)
T ss_pred ----HHHHHHHHHHHhc--CCcEEEECCCCCCc
Confidence 1234444444443 35999999999963
No 94
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=96.42 E-value=0.0069 Score=61.02 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=24.4
Q ss_pred eEEEEEecCCCCCChH-HHHHHHHh---------CCCCEEEEcCCcccc
Q 008312 209 SRIAIVGDVGLTYNTT-STVSHMIS---------NRPDLILLVGDVTYA 247 (570)
Q Consensus 209 ~rf~vigD~g~~~~~~-~~i~~l~~---------~~pDfvl~~GDl~Y~ 247 (570)
+|+.++||+|.....- ..++++.- ..-|.++++||++..
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDR 49 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDR 49 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCC
Confidence 3789999999764322 22222211 123689999999963
No 95
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=96.40 E-value=0.033 Score=56.44 Aligned_cols=190 Identities=14% Similarity=0.193 Sum_probs=95.8
Q ss_pred EEEEecCCCCCChH--H----HHHHHHh-----------CCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccch
Q 008312 211 IAIVGDVGLTYNTT--S----TVSHMIS-----------NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETY 273 (570)
Q Consensus 211 f~vigD~g~~~~~~--~----~i~~l~~-----------~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y 273 (570)
+++++|++.+.+.. . .++.+.. .+...+|++||.+...+-.........+. ........+
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~---~~~~~~~~~ 78 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYL---TKKSSAASV 78 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhcc---ccccchhhH
Confidence 78899999875532 1 2222221 13457999999996431100000000000 000001112
Q ss_pred HHHHHHHHHhhhhhhccCCeEEeccCccccccccc-hhh-hhhhcccCCCCCCCCCCCcceEEEEeCeEEEEEeecCc--
Q 008312 274 QPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAEN-RTF-VAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYV-- 349 (570)
Q Consensus 274 ~~~wd~~~~~l~~l~~~iP~~~v~GNHD~~~~~~~-~~~-~~y~~~f~~P~~~~~~~~~~yYSf~~G~v~fI~Ldt~~-- 349 (570)
...+.+..++..+.+.+|+.+.|||||-....-. ..+ ..+..+-....+ -....| -|.|++++++|++.....
T Consensus 79 -~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~~~-~~~vtN-P~~~~i~g~~vLgtsGqni~ 155 (257)
T cd07387 79 -EAVKELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNYST-LNLVTN-PYEFSIDGVRVLGTSGQNVD 155 (257)
T ss_pred -HHHHHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCHHHhhcccccCC-cEEeCC-CeEEEECCEEEEEECCCCHH
Confidence 2356677788888889999999999998654211 111 111000000000 001112 356999999999988742
Q ss_pred ---CCCCCHHHHHHHHHHHhccccCCCCEEEEEeCC-CccccCCC--cccchHHHHHHHHHHHHHcCCeEEEEcccccce
Q 008312 350 ---SFDKSGDQYKWLEEDLANVEREVTPWLVATWHA-PWYSTYKA--HYREAECMRVAMEDLLYKYGVDVVFNGHQVHAY 423 (570)
Q Consensus 350 ---~~~~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~-P~y~s~~~--~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~Y 423 (570)
.|...+.-.+.||+.|+.- |- |.+...-. .+.+. .+++-+.-.+++|+|| .|.|
T Consensus 156 Di~ky~~~~~~l~~me~~L~wr------------HlaPTaPDTL~~yP~~~~-------Dpfvi~~~PhVyf~Gn-q~~f 215 (257)
T cd07387 156 DILKYSSLESRLDILERTLKWR------------HIAPTAPDTLWCYPFTDR-------DPFILEECPHVYFAGN-QPKF 215 (257)
T ss_pred HHHHhCCCCCHHHHHHHHHHhc------------ccCCCCCCccccccCCCC-------CceeecCCCCEEEeCC-Ccce
Confidence 2334445577788887651 21 11110000 00000 0233344589999999 9988
Q ss_pred eee
Q 008312 424 ERS 426 (570)
Q Consensus 424 eR~ 426 (570)
+-.
T Consensus 216 ~t~ 218 (257)
T cd07387 216 GTK 218 (257)
T ss_pred eee
Confidence 764
No 96
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=96.40 E-value=0.0044 Score=61.93 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=40.5
Q ss_pred EEEEEecCCCCCChH-HHHHHHH---hC-------CCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHH
Q 008312 210 RIAIVGDVGLTYNTT-STVSHMI---SN-------RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWD 278 (570)
Q Consensus 210 rf~vigD~g~~~~~~-~~i~~l~---~~-------~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd 278 (570)
||+++||+|.....- ..++++. +. +.|.++++||++.. |.. -.
T Consensus 2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDr------G~~--------------------s~ 55 (234)
T cd07423 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDR------GPD--------------------SP 55 (234)
T ss_pred CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCC------CCC--------------------HH
Confidence 799999999864332 2333331 11 25899999999953 221 01
Q ss_pred HHHHhhhhhhccCCeEEeccCcccc
Q 008312 279 YWGRYMQPVLSKVPIMVVEGNHEYE 303 (570)
Q Consensus 279 ~~~~~l~~l~~~iP~~~v~GNHD~~ 303 (570)
+..+++..+...-.+.++.||||..
T Consensus 56 evl~~l~~l~~~~~~~~v~GNHE~~ 80 (234)
T cd07423 56 EVLRLVMSMVAAGAALCVPGNHDNK 80 (234)
T ss_pred HHHHHHHHHhhCCcEEEEECCcHHH
Confidence 2223333332234578999999973
No 97
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.36 E-value=0.093 Score=61.21 Aligned_cols=48 Identities=29% Similarity=0.201 Sum_probs=28.2
Q ss_pred CCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHH-cCCeEEEEcccccceee
Q 008312 371 EVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVVFNGHQVHAYER 425 (570)
Q Consensus 371 ~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-y~VdlvlsGH~~H~YeR 425 (570)
.++..+|++.|..+-.... .. .+..+-. .+.+ -+||++|.|| .|..-.
T Consensus 243 ~GaDvIIaLsH~G~~~d~~---~~--~~ena~~-~l~~v~gID~IlgGH-sH~~~~ 291 (780)
T PRK09418 243 EGADVIVALAHSGVDKSGY---NV--GMENASY-YLTEVPGVDAVLMGH-SHTEVK 291 (780)
T ss_pred cCCCEEEEEeccCcccccc---cc--cchhhhH-HHhcCCCCCEEEECC-CCCccc
Confidence 4577899999987653211 11 0101111 1344 3799999999 997643
No 98
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=96.33 E-value=0.084 Score=57.19 Aligned_cols=90 Identities=17% Similarity=0.331 Sum_probs=55.4
Q ss_pred CCeEEEEEecCCCCCCh------HHHHHHHH-----hCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHH
Q 008312 207 YPSRIAIVGDVGLTYNT------TSTVSHMI-----SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQP 275 (570)
Q Consensus 207 ~~~rf~vigD~g~~~~~------~~~i~~l~-----~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~ 275 (570)
..+++++++|.|.+... ...++.+. +.+...++.+||++..-+.. -|+. .+-.+..-| .
T Consensus 224 e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiY-pgq~--------~eL~i~di~-~ 293 (481)
T COG1311 224 ERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIY-PGQE--------EELVIADIY-E 293 (481)
T ss_pred cceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccc-cCcc--------cccccccch-H
Confidence 46889999999986432 12233332 12457999999999532211 1111 111122222 2
Q ss_pred HHHHHHHhhhhhhccCCeEEeccCccccccc
Q 008312 276 RWDYWGRYMQPVLSKVPIMVVEGNHEYEEQA 306 (570)
Q Consensus 276 ~wd~~~~~l~~l~~~iP~~~v~GNHD~~~~~ 306 (570)
+++++.+++..+-..+-+++.|||||.....
T Consensus 294 qy~~~A~~L~~vp~~I~v~i~PGnhDa~r~a 324 (481)
T COG1311 294 QYEELAEFLDQVPEHIKVFIMPGNHDAVRQA 324 (481)
T ss_pred HHHHHHHHHhhCCCCceEEEecCCCCccccc
Confidence 5567777787777788899999999986543
No 99
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=96.23 E-value=0.12 Score=59.52 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=31.0
Q ss_pred HHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHH-cCCeEEEEcccccce
Q 008312 361 LEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVVFNGHQVHAY 423 (570)
Q Consensus 361 Le~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-y~VdlvlsGH~~H~Y 423 (570)
+++...+....++.-+|++.|........... .+. .... +.+ -+||++|.|| .|..
T Consensus 207 a~~~v~~Lk~~gaDvII~LsH~G~~~d~~~~~--aen---~~~~-l~~v~gID~Il~GH-sH~~ 263 (649)
T PRK09420 207 ARKYVPEMKEKGADIVVAIPHSGISADPYKAM--AEN---SVYY-LSEVPGIDAIMFGH-SHAV 263 (649)
T ss_pred HHHHHHHHHHcCCCEEEEEecCCcCCCCcccc--ccc---hhHH-HhcCCCCCEEEeCC-CCcc
Confidence 33433333334577899999987643211000 111 1111 233 4799999999 9974
No 100
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=96.04 E-value=0.13 Score=58.99 Aligned_cols=46 Identities=30% Similarity=0.238 Sum_probs=27.6
Q ss_pred CCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHH-cCCeEEEEcccccce
Q 008312 371 EVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVVFNGHQVHAY 423 (570)
Q Consensus 371 ~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-y~VdlvlsGH~~H~Y 423 (570)
.++.-+|++.|.......... ..+... ..+.+ -+||++|.|| .|..
T Consensus 194 ~gaDvII~LsH~G~~~d~~~~--~~en~~----~~l~~v~gID~Il~GH-sH~~ 240 (626)
T TIGR01390 194 KGADIIVALAHSGISADPYQP--GAENSA----YYLTKVPGIDAVLFGH-SHAV 240 (626)
T ss_pred cCCCEEEEEeccCcCCCcccc--ccchHH----HHHhcCCCCCEEEcCC-CCcc
Confidence 457789999998765421100 111111 12334 4799999999 9974
No 101
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=95.80 E-value=0.31 Score=48.89 Aligned_cols=186 Identities=19% Similarity=0.269 Sum_probs=88.2
Q ss_pred EEEecCCCCCChH---HHHHHHHh-CCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhhh
Q 008312 212 AIVGDVGLTYNTT---STVSHMIS-NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPV 287 (570)
Q Consensus 212 ~vigD~g~~~~~~---~~i~~l~~-~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~l 287 (570)
+++||.=...... ..+..+.+ .++||||..|.++- .|.+. . . +.+.+++
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa------~G~Gi------------t---~---~~~~~L~--- 53 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEYGIDFVIANGENAA------GGFGI------------T---P---KIAEELF--- 53 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTT------TTSS-----------------H---HHHHHHH---
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhcCCCEEEECCcccC------CCCCC------------C---H---HHHHHHH---
Confidence 3567763321111 22333433 48999999999983 23321 0 1 1222222
Q ss_pred hccCCeEEeccCccccccccchhhhhhhc---ccCCCCCCC-CCCCcceEEEEeCeEEEEEeecC--cCCCCCHHHHHHH
Q 008312 288 LSKVPIMVVEGNHEYEEQAENRTFVAYTS---RFAFPSKES-GSLSKFYYSFNAGGIHFLMLAAY--VSFDKSGDQYKWL 361 (570)
Q Consensus 288 ~~~iP~~~v~GNHD~~~~~~~~~~~~y~~---~f~~P~~~~-~~~~~~yYSf~~G~v~fI~Ldt~--~~~~~~~~Q~~WL 361 (570)
...+- ..+.|||=+... ....|.. +.--|.|-+ +..+.-|..++.++.++-++|-- ........=...+
T Consensus 54 ~~GvD-viT~GNH~wdkk----ei~~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~ 128 (253)
T PF13277_consen 54 KAGVD-VITMGNHIWDKK----EIFDFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAA 128 (253)
T ss_dssp HHT-S-EEE--TTTTSST----THHHHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHH
T ss_pred hcCCC-EEecCcccccCc----HHHHHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHH
Confidence 22333 467899988632 2222222 222233322 35577899999998777777642 2111112334445
Q ss_pred HHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccc---eeeeeccccCccCCCC
Q 008312 362 EEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHA---YERSNRVYNYTLDPCG 438 (570)
Q Consensus 362 e~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~---YeR~~pv~n~~~~~~g 438 (570)
++.|++. +.+++.+||=+|.=.-+ | +.-.-.+..-+|.+|+.-| +|. -+|.. |+|
T Consensus 129 d~~l~~l-~~~~~~iiVDFHAEaTS---------E---K~A~g~~lDGrvsaV~GTH-THVqTaDerIL--------p~G 186 (253)
T PF13277_consen 129 DRLLEEL-KEETDIIIVDFHAEATS---------E---KQAMGWYLDGRVSAVVGTH-THVQTADERIL--------PGG 186 (253)
T ss_dssp HHHHHH------SEEEEEEE-S-HH---------H---HHHHHHHHBTTBSEEEEES-SSS-BS--EE---------TTS
T ss_pred HHHHHhc-cccCCEEEEEeecCcHH---------H---HHHHHHHhCCcEEEEEeCC-CCccCchhhcc--------CCC
Confidence 5555554 34677899988842111 1 1222456677899999999 995 34443 689
Q ss_pred cEEEEE-CCCCccC
Q 008312 439 PVHITV-GDGGNRE 451 (570)
Q Consensus 439 ~vyiv~-G~gG~~e 451 (570)
+.||+- |+-|...
T Consensus 187 TaYiTDvGMtG~~d 200 (253)
T PF13277_consen 187 TAYITDVGMTGPYD 200 (253)
T ss_dssp -EEES---EBEESS
T ss_pred CEEEecCccccCcc
Confidence 999853 6666644
No 102
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=95.77 E-value=0.021 Score=57.52 Aligned_cols=138 Identities=22% Similarity=0.358 Sum_probs=83.9
Q ss_pred hhhhhccCCeEEeccCccccccccc-------hhhhhhhcc------cCCCCC--CCCCCCcceEEEEeCeEEEEEeecC
Q 008312 284 MQPVLSKVPIMVVEGNHEYEEQAEN-------RTFVAYTSR------FAFPSK--ESGSLSKFYYSFNAGGIHFLMLAAY 348 (570)
Q Consensus 284 l~~l~~~iP~~~v~GNHD~~~~~~~-------~~~~~y~~~------f~~P~~--~~~~~~~~yYSf~~G~v~fI~Ldt~ 348 (570)
..++...+|+|+-.||||..-+... +....|... |.-|.- ..-.....-||++.|++|.+-+-..
T Consensus 164 vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~Hr~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf 243 (392)
T COG5555 164 VGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENYHRSDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRF 243 (392)
T ss_pred CCCceeeeeeEeccCchhhcccCCCCchhHHHHHHHHHHHhhcCcCcccCCCCCcccccccchheeccccceeEEEEeee
Confidence 4455677999999999999754321 111222221 111111 1123445679999999999888664
Q ss_pred cCCC-C-CHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCccc----------------chHHHHHHHHHHHHHcC
Q 008312 349 VSFD-K-SGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYR----------------EAECMRVAMEDLLYKYG 410 (570)
Q Consensus 349 ~~~~-~-~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~----------------~~~~~r~~l~~ll~~y~ 410 (570)
..-. . ...-+-||+.+|........| ++++.|.-+-....+.+. .....|.+|...++-|+
T Consensus 244 ~Gd~~~ga~sslpwlk~dl~~~aadgrp-v~LfqhyGwdtfsteawdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYN 322 (392)
T COG5555 244 IGDAEPGANSSLPWLKVDLIYSAADGRP-VYLFQHYGWDTFSTEAWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYN 322 (392)
T ss_pred ccccCCCccccCcceeccceeeccCCCc-eeehhhhCccceeccccCchhcccccCCCCCCCCCCCCCcchHHHhhcCce
Confidence 3211 1 123467999999886544445 677778754321111100 01123678888999999
Q ss_pred CeEEEEcccccce
Q 008312 411 VDVVFNGHQVHAY 423 (570)
Q Consensus 411 VdlvlsGH~~H~Y 423 (570)
|.-.+.|| .|..
T Consensus 323 vvg~fhGh-khd~ 334 (392)
T COG5555 323 VVGTFHGH-KHDF 334 (392)
T ss_pred eEEecccc-cccc
Confidence 99999999 9965
No 103
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=95.77 E-value=0.012 Score=58.22 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=26.0
Q ss_pred EEEEEecCCCCCChHH-HHHHHH-hCCCCEEEEcCCccc
Q 008312 210 RIAIVGDVGLTYNTTS-TVSHMI-SNRPDLILLVGDVTY 246 (570)
Q Consensus 210 rf~vigD~g~~~~~~~-~i~~l~-~~~pDfvl~~GDl~Y 246 (570)
|++++||+|.....-. .++.+. ..+.|.++++||++.
T Consensus 16 ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vd 54 (218)
T PRK09968 16 HIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNID 54 (218)
T ss_pred eEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcC
Confidence 8999999997643222 233332 236899999999995
No 104
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=95.77 E-value=0.033 Score=45.17 Aligned_cols=76 Identities=26% Similarity=0.312 Sum_probs=45.6
Q ss_pred CCceEEEeecCCCCceEEEEEeCcccccCCCCCCCCCCCccEEEEccCCCCCceEEEeEEEEeeeecccCCccccccCeE
Q 008312 85 EPEQISVSLSSAHDSVWISWITGEFQIGNNLKPLDPKSVVSVVRYGTRRSQLNRKATGRSLVYSQLYPFLGLQNYTSGII 164 (570)
Q Consensus 85 ~P~qi~lt~~~~p~s~~I~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~a~g~~~~y~~~~p~~g~~~~~~~~~ 164 (570)
+|+.+++.-.. .+++.|+|...... +.. ...=.|+|....+.... .... .++-.
T Consensus 2 ~P~~l~v~~~~-~~sv~v~W~~~~~~-~~~-------~~~y~v~~~~~~~~~~~------~~~~-----------~~~~~ 55 (85)
T PF00041_consen 2 APENLSVSNIS-PTSVTVSWKPPSSG-NGP-------ITGYRVEYRSVNSTSDW------QEVT-----------VPGNE 55 (85)
T ss_dssp SSEEEEEEEEC-SSEEEEEEEESSST-SSS-------ESEEEEEEEETTSSSEE------EEEE-----------EETTS
T ss_pred cCcCeEEEECC-CCEEEEEEECCCCC-CCC-------eeEEEEEEEecccceee------eeee-----------eeeee
Confidence 47888887654 78999999986411 111 12345666554433200 0000 01112
Q ss_pred EEEEeCCCCCCCEEEEEEecCC
Q 008312 165 HHVRLTGLKPDTLYHYQCGDPS 186 (570)
Q Consensus 165 h~v~ltgL~P~T~Y~Yrvg~~~ 186 (570)
+.++|+||+|+|.|.++|..-+
T Consensus 56 ~~~~i~~L~p~t~Y~~~v~a~~ 77 (85)
T PF00041_consen 56 TSYTITGLQPGTTYEFRVRAVN 77 (85)
T ss_dssp SEEEEESCCTTSEEEEEEEEEE
T ss_pred eeeeeccCCCCCEEEEEEEEEe
Confidence 3778899999999999987544
No 105
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=95.65 E-value=0.0092 Score=59.00 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=26.3
Q ss_pred EEEEEecCCCCCCh-HHHHHHHHhC-CCCEEEEcCCccc
Q 008312 210 RIAIVGDVGLTYNT-TSTVSHMISN-RPDLILLVGDVTY 246 (570)
Q Consensus 210 rf~vigD~g~~~~~-~~~i~~l~~~-~pDfvl~~GDl~Y 246 (570)
|+.++||+|..... .+.++++... +.|-++++||++.
T Consensus 18 ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvD 56 (218)
T PRK11439 18 HIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLID 56 (218)
T ss_pred eEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccC
Confidence 89999999986433 2234443322 5789999999995
No 106
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=95.63 E-value=0.019 Score=57.02 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=23.5
Q ss_pred EEEEecCCCCCChH-HHHHHHHhC--------CCCEEEEcCCcccc
Q 008312 211 IAIVGDVGLTYNTT-STVSHMISN--------RPDLILLVGDVTYA 247 (570)
Q Consensus 211 f~vigD~g~~~~~~-~~i~~l~~~--------~pDfvl~~GDl~Y~ 247 (570)
+.+|||+|.....- ..++++... ..|.+|++||++..
T Consensus 1 ~~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDR 46 (222)
T cd07413 1 YDFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDR 46 (222)
T ss_pred CEEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCC
Confidence 36899999864322 233333211 35799999999953
No 107
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=95.57 E-value=0.1 Score=52.14 Aligned_cols=128 Identities=14% Similarity=0.190 Sum_probs=64.5
Q ss_pred cCCeEEeccCccccccccchhhhhhh---cccCCCCCCCCC---CCcceEEEEeCe--EEEEEeecCcCCC---------
Q 008312 290 KVPIMVVEGNHEYEEQAENRTFVAYT---SRFAFPSKESGS---LSKFYYSFNAGG--IHFLMLAAYVSFD--------- 352 (570)
Q Consensus 290 ~iP~~~v~GNHD~~~~~~~~~~~~y~---~~f~~P~~~~~~---~~~~yYSf~~G~--v~fI~Ldt~~~~~--------- 352 (570)
.+-++.+.+||++..... .+.... ..-.++..+.+. ....+.-++.++ +.|+.+.+...-.
T Consensus 77 G~d~~tlaNNH~fD~G~~--gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~~~~~~~~~~~~~~ 154 (239)
T cd07381 77 GFDVVSLANNHTLDYGEE--GLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFLAYTYGTNGIPLAAGARPG 154 (239)
T ss_pred CCCEEEcccccccccchH--HHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEEEEECCCCCCcCcccCCcc
Confidence 455555556999975422 222111 112233221111 113455567777 5555554421100
Q ss_pred -CCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeee
Q 008312 353 -KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERS 426 (570)
Q Consensus 353 -~~~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~ 426 (570)
....-.+-+++.+++..+. ...+||..|-..-... .. . .....+...+.+.++|+++.|| .|..+-.
T Consensus 155 ~~~~~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~---~p-~-~~~~~la~~l~~~G~D~IiG~H-~Hv~q~~ 222 (239)
T cd07381 155 GVNPLDLERIAADIAEAKKK-ADIVIVSLHWGVEYSY---YP-T-PEQRELARALIDAGADLVIGHH-PHVLQGI 222 (239)
T ss_pred ccCccCHHHHHHHHHHHhhc-CCEEEEEecCcccCCC---CC-C-HHHHHHHHHHHHCCCCEEEcCC-CCcCCCe
Confidence 0111123455555555433 7889999996432211 11 1 1223444555567999999999 9976543
No 108
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=95.40 E-value=0.75 Score=45.84 Aligned_cols=193 Identities=20% Similarity=0.278 Sum_probs=101.3
Q ss_pred eEEEEEecCCCCCChHHHH---HHHHh-CCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhh
Q 008312 209 SRIAIVGDVGLTYNTTSTV---SHMIS-NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYM 284 (570)
Q Consensus 209 ~rf~vigD~g~~~~~~~~i---~~l~~-~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l 284 (570)
+|++++||+=........- ..+.+ .++||||..|-++- +|.+. -|+.+..++
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa------~G~Gi------------------t~k~y~~l~ 56 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAA------GGFGI------------------TEKIYKELL 56 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCcccc------CCcCC------------------CHHHHHHHH
Confidence 5899999986554333332 33333 48999999999883 23321 134444433
Q ss_pred hhhhccCCeEEeccCccccccccchhhhhhhcccCCCCCCC-CCCCcceEEEEeCeEEEEEeec--CcCCCC-CHHHHHH
Q 008312 285 QPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKES-GSLSKFYYSFNAGGIHFLMLAA--YVSFDK-SGDQYKW 360 (570)
Q Consensus 285 ~~l~~~iP~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~-~~~~~~yYSf~~G~v~fI~Ldt--~~~~~~-~~~Q~~W 360 (570)
+. .+- .++.|||=+....- ..|..-..++--|.+-+ +..+..|+-|+..+..+.+.|- ...-.. -..-.+=
T Consensus 57 ~~---G~d-viT~GNH~wd~~ei-~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~~ 131 (266)
T COG1692 57 EA---GAD-VITLGNHTWDQKEI-LDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFKA 131 (266)
T ss_pred Hh---CCC-EEecccccccchHH-HHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHHH
Confidence 22 233 46789998853211 11111112222233311 2345566667776655555543 221111 1222334
Q ss_pred HHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeeeeccccCccCCCCcE
Q 008312 361 LEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERSNRVYNYTLDPCGPV 440 (570)
Q Consensus 361 Le~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~pv~n~~~~~~g~v 440 (570)
+++.|.+.+ .+++-+||-+|.=--+ |..+ .-++.+-+|.+|+.=| +|.-.-..++ -+.|+.
T Consensus 132 ~d~l~~~~~-~~~~~iiVDFHAEtTS-------EK~a-----~g~yldGrvsavvGTH-THV~TaD~rI-----L~~GTa 192 (266)
T COG1692 132 ADKLLDEIK-LGTDLIIVDFHAETTS-------EKNA-----FGWYLDGRVSAVVGTH-THVPTADERI-----LPKGTA 192 (266)
T ss_pred HHHHHHhCc-cCCceEEEEccccchh-------hhhh-----hheEEcCeEEEEEecc-Ccccccccee-----cCCCcE
Confidence 566666544 3557789998853222 1111 1234455799999999 9964332222 367999
Q ss_pred EEEE-CCCCc
Q 008312 441 HITV-GDGGN 449 (570)
Q Consensus 441 yiv~-G~gG~ 449 (570)
|++- |+-|.
T Consensus 193 yiTDvGMtG~ 202 (266)
T COG1692 193 YITDVGMTGP 202 (266)
T ss_pred EEecCccccc
Confidence 9853 44443
No 109
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=95.18 E-value=0.031 Score=56.75 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=39.1
Q ss_pred EEEecCCCCCCh-HHHHHHHHh-CCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHHHHHHHhhhhhhc
Q 008312 212 AIVGDVGLTYNT-TSTVSHMIS-NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLS 289 (570)
Q Consensus 212 ~vigD~g~~~~~-~~~i~~l~~-~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~ 289 (570)
.++||+|..... .+.++++.- .+.|.++++||++.. |.. + .+..+++..+.
T Consensus 2 yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdR------Gp~------------------s--~evl~~l~~l~- 54 (257)
T cd07422 2 YAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNR------GPD------------------S--LETLRFVKSLG- 54 (257)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCC------CcC------------------H--HHHHHHHHhcC-
Confidence 589999986433 223344322 257999999999953 321 0 12233333332
Q ss_pred cCCeEEeccCcccc
Q 008312 290 KVPIMVVEGNHEYE 303 (570)
Q Consensus 290 ~iP~~~v~GNHD~~ 303 (570)
..+..+.||||..
T Consensus 55 -~~v~~VlGNHD~~ 67 (257)
T cd07422 55 -DSAKTVLGNHDLH 67 (257)
T ss_pred -CCeEEEcCCchHH
Confidence 3678999999984
No 110
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=95.17 E-value=0.024 Score=55.77 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=23.0
Q ss_pred EEecCCCCCChH-HHHHHHHhCCCCEEEEcCCccc
Q 008312 213 IVGDVGLTYNTT-STVSHMISNRPDLILLVGDVTY 246 (570)
Q Consensus 213 vigD~g~~~~~~-~~i~~l~~~~pDfvl~~GDl~Y 246 (570)
++||+|.....- ..++.+.....|.+|++||++.
T Consensus 2 ~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vd 36 (225)
T cd00144 2 VIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVD 36 (225)
T ss_pred EEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeC
Confidence 799999753221 2233333347899999999995
No 111
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=95.08 E-value=0.041 Score=56.57 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=25.2
Q ss_pred EEEEEecCCCCCCh-HHHHHHHHhC------CCCEEEEcCCccc
Q 008312 210 RIAIVGDVGLTYNT-TSTVSHMISN------RPDLILLVGDVTY 246 (570)
Q Consensus 210 rf~vigD~g~~~~~-~~~i~~l~~~------~pDfvl~~GDl~Y 246 (570)
++.++||+|..... ...++.+.+. ..+.+|++||++.
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVD 46 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCD 46 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCC
Confidence 68999999987443 2334444321 3568999999995
No 112
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=95.02 E-value=0.22 Score=49.90 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=35.5
Q ss_pred HHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeee
Q 008312 361 LEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERS 426 (570)
Q Consensus 361 Le~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~ 426 (570)
+++.++++.. +..++||..|--.-.... . ... ...+..-+.+.++|+++.|| .|..+..
T Consensus 162 i~~~i~~lr~-~~D~vIv~~H~G~e~~~~---p-~~~-~~~~A~~l~~~G~DvIiG~H-~H~~~~~ 220 (239)
T smart00854 162 ILADIARARK-KADVVIVSLHWGVEYQYE---P-TDE-QRELAHALIDAGADVVIGHH-PHVLQPI 220 (239)
T ss_pred HHHHHHHHhc-cCCEEEEEecCccccCCC---C-CHH-HHHHHHHHHHcCCCEEEcCC-CCcCCce
Confidence 4444444432 478899999966432111 1 111 23344445457899999999 9987644
No 113
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=94.61 E-value=0.048 Score=55.77 Aligned_cols=38 Identities=18% Similarity=0.341 Sum_probs=26.2
Q ss_pred EEEEEecCCCCCCh-HHHHHHHH-hCCCCEEEEcCCcccc
Q 008312 210 RIAIVGDVGLTYNT-TSTVSHMI-SNRPDLILLVGDVTYA 247 (570)
Q Consensus 210 rf~vigD~g~~~~~-~~~i~~l~-~~~pDfvl~~GDl~Y~ 247 (570)
++.+|||+|..... ...++++. ....|-++++||++..
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdR 41 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVAR 41 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCC
Confidence 56899999987443 23444443 2356899999999953
No 114
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=94.60 E-value=0.073 Score=52.91 Aligned_cols=73 Identities=16% Similarity=0.414 Sum_probs=46.3
Q ss_pred eEEEEEecCCCCCCh--------------HH---HHHHH-HhCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcc
Q 008312 209 SRIAIVGDVGLTYNT--------------TS---TVSHM-ISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIH 270 (570)
Q Consensus 209 ~rf~vigD~g~~~~~--------------~~---~i~~l-~~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~ 270 (570)
-+.++++|+|.+... .. .++++ .+.+|+-+|.+||+-.+- +.
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~-----~~--------------- 79 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEF-----GK--------------- 79 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCcccccc-----Cc---------------
Confidence 478999999997532 11 23322 346999999999998531 11
Q ss_pred cchHHHHHHHHHhhhhhhccCCeEEeccCcccc
Q 008312 271 ETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE 303 (570)
Q Consensus 271 e~Y~~~wd~~~~~l~~l~~~iP~~~v~GNHD~~ 303 (570)
....+|+....+++.+... -++++.||||-.
T Consensus 80 -~~~~e~~~~~~f~~~~~~~-evi~i~GNHD~~ 110 (235)
T COG1407 80 -SLRQEKEEVREFLELLDER-EVIIIRGNHDNG 110 (235)
T ss_pred -cccccHHHHHHHHHHhccC-cEEEEeccCCCc
Confidence 0113455555555544333 599999999975
No 115
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=92.60 E-value=1.2 Score=44.86 Aligned_cols=64 Identities=13% Similarity=0.180 Sum_probs=43.1
Q ss_pred HHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCeEEEEcccccceeeee
Q 008312 357 QYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHQVHAYERSN 427 (570)
Q Consensus 357 Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~VdlvlsGH~~H~YeR~~ 427 (570)
+.+.+++++++++ ++..++||+.|--.-.... -.+. ..++...+.+.++|+|+.+| .|..+-.-
T Consensus 169 ~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~~----p~~~-q~~~a~~lidaGaDiIiG~H-pHv~q~~E 232 (250)
T PF09587_consen 169 GIERIKEDIREAR-KKADVVIVSLHWGIEYENY----PTPE-QRELARALIDAGADIIIGHH-PHVIQPVE 232 (250)
T ss_pred hHHHHHHHHHHHh-cCCCEEEEEeccCCCCCCC----CCHH-HHHHHHHHHHcCCCEEEeCC-CCcccceE
Confidence 4478888888876 5678999999964221111 1222 34455556668999999999 99876543
No 116
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=92.27 E-value=0.24 Score=51.85 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCeEEEEcc
Q 008312 399 RVAMEDLLYKYGVDVVFNGH 418 (570)
Q Consensus 399 r~~l~~ll~~y~VdlvlsGH 418 (570)
.++.+..+++++.++++=||
T Consensus 253 ~~~~~~Fl~~n~l~~IIR~H 272 (321)
T cd07420 253 PDVTSKVLQKHGLSLLIRSH 272 (321)
T ss_pred HHHHHHHHHHCCCcEEEEcC
Confidence 56788999999999999999
No 117
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=92.17 E-value=0.44 Score=52.23 Aligned_cols=42 Identities=33% Similarity=0.446 Sum_probs=32.6
Q ss_pred CCeEEEEEecCCCCCC---------hHHHHHHHH----hCCCCEEEEcCCccccc
Q 008312 207 YPSRIAIVGDVGLTYN---------TTSTVSHMI----SNRPDLILLVGDVTYAN 248 (570)
Q Consensus 207 ~~~rf~vigD~g~~~~---------~~~~i~~l~----~~~pDfvl~~GDl~Y~d 248 (570)
..+||++..|.|.++. +..++++++ +++.||||..||++..+
T Consensus 12 ntirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeN 66 (646)
T KOG2310|consen 12 NTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHEN 66 (646)
T ss_pred cceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccC
Confidence 3699999999999864 234555543 46999999999999765
No 118
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=91.66 E-value=0.28 Score=51.11 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCeEEEEccc
Q 008312 399 RVAMEDLLYKYGVDVVFNGHQ 419 (570)
Q Consensus 399 r~~l~~ll~~y~VdlvlsGH~ 419 (570)
.++.++.+++.+.++++=|||
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He 242 (305)
T cd07416 222 YRAVCEFLQKNNLLSIIRAHE 242 (305)
T ss_pred HHHHHHHHHHcCCeEEEEecc
Confidence 467889999999999999993
No 119
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=91.36 E-value=1.6 Score=48.69 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHc-CCeE-EEEcccccce
Q 008312 355 GDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKY-GVDV-VFNGHQVHAY 423 (570)
Q Consensus 355 ~~Q~~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y-~Vdl-vlsGH~~H~Y 423 (570)
-.|.+|-.+.++. .+..-+|+.+|.|.-... .....+.++...+ ++++ ||-|| .|..
T Consensus 211 i~~~~~~~~m~~~---~~idlii~lgH~~~~~~~--------e~~~~~~~ir~~~p~t~IqviGGH-shir 269 (602)
T KOG4419|consen 211 ITQSEWEQDMVNT---TDIDLIIALGHSPVRDDD--------EWKSLHAEIRKVHPNTPIQVIGGH-SHIR 269 (602)
T ss_pred HhccchHHHHhhc---cCccEEEEecccccccch--------hhhhHHHHHhhhCCCCceEEECch-hhhh
Confidence 4677888777766 455668999999864321 1112444444444 5788 99999 9963
No 120
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=91.10 E-value=0.36 Score=49.44 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCeEEEEccc
Q 008312 399 RVAMEDLLYKYGVDVVFNGHQ 419 (570)
Q Consensus 399 r~~l~~ll~~y~VdlvlsGH~ 419 (570)
.+++++.++++++++++-|||
T Consensus 200 ~~~~~~Fl~~n~l~~iiR~He 220 (271)
T smart00156 200 PDAVDEFLKKNNLKLIIRAHQ 220 (271)
T ss_pred HHHHHHHHHHCCCeEEEecCc
Confidence 478889999999999999993
No 121
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=89.93 E-value=0.43 Score=49.24 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCeEEEEcc
Q 008312 399 RVAMEDLLYKYGVDVVFNGH 418 (570)
Q Consensus 399 r~~l~~ll~~y~VdlvlsGH 418 (570)
.++++..+++.+.++++=||
T Consensus 214 ~~~~~~Fl~~n~l~~iiR~H 233 (285)
T cd07415 214 QDVVEEFNHNNGLTLICRAH 233 (285)
T ss_pred HHHHHHHHHHCCCeEEEEcC
Confidence 47888999999999999999
No 122
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=89.78 E-value=0.48 Score=49.09 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCeEEEEcc
Q 008312 399 RVAMEDLLYKYGVDVVFNGH 418 (570)
Q Consensus 399 r~~l~~ll~~y~VdlvlsGH 418 (570)
.++++..+++.+.++++=||
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~H 241 (293)
T cd07414 222 KDVVAKFLNKHDLDLICRAH 241 (293)
T ss_pred HHHHHHHHHHcCCeEEEECC
Confidence 46888999999999999999
No 123
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=89.20 E-value=0.69 Score=49.46 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCeEEEEcc
Q 008312 399 RVAMEDLLYKYGVDVVFNGH 418 (570)
Q Consensus 399 r~~l~~ll~~y~VdlvlsGH 418 (570)
.+.++..|++++.++++=||
T Consensus 273 ~~~~~~FL~~n~l~~IIRsH 292 (377)
T cd07418 273 PDCTEEFLEKNNLKLIIRSH 292 (377)
T ss_pred HHHHHHHHHHcCCcEEEECC
Confidence 47888999999999999999
No 124
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=88.89 E-value=0.62 Score=48.50 Aligned_cols=20 Identities=5% Similarity=0.154 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCeEEEEcc
Q 008312 399 RVAMEDLLYKYGVDVVFNGH 418 (570)
Q Consensus 399 r~~l~~ll~~y~VdlvlsGH 418 (570)
.+++++.+++.+.++++=||
T Consensus 215 ~~~~~~Fl~~n~l~~iiR~H 234 (303)
T PTZ00239 215 AKVTKEFCRLNDLTLICRAH 234 (303)
T ss_pred HHHHHHHHHHCCCcEEEEcC
Confidence 47888999999999999999
No 125
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=87.50 E-value=0.86 Score=47.74 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCeEEEEcc
Q 008312 399 RVAMEDLLYKYGVDVVFNGH 418 (570)
Q Consensus 399 r~~l~~ll~~y~VdlvlsGH 418 (570)
.++++..+++++.++++=||
T Consensus 231 ~~~~~~Fl~~n~l~~IiR~H 250 (320)
T PTZ00480 231 QEIVQVFLKKHELDLICRAH 250 (320)
T ss_pred HHHHHHHHHhCCCcEEEEcC
Confidence 57888999999999999999
No 126
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=85.78 E-value=1.3 Score=46.34 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCeEEEEcc
Q 008312 399 RVAMEDLLYKYGVDVVFNGH 418 (570)
Q Consensus 399 r~~l~~ll~~y~VdlvlsGH 418 (570)
.++++..+++.+.++++-||
T Consensus 233 ~~~~~~Fl~~n~l~~iiR~H 252 (316)
T cd07417 233 PDVTKRFLEENNLEYIIRSH 252 (316)
T ss_pred HHHHHHHHHHcCCcEEEECC
Confidence 46788999999999999999
No 127
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=85.75 E-value=0.85 Score=47.27 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCeEEEEcc
Q 008312 399 RVAMEDLLYKYGVDVVFNGH 418 (570)
Q Consensus 399 r~~l~~ll~~y~VdlvlsGH 418 (570)
.++++..+++.+.++++=||
T Consensus 224 ~~~~~~Fl~~n~l~~iiR~H 243 (294)
T PTZ00244 224 EDIVNDFLDMVDMDLIVRAH 243 (294)
T ss_pred HHHHHHHHHHcCCcEEEEcC
Confidence 46788999999999999999
No 128
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=85.50 E-value=2.9 Score=50.19 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=25.7
Q ss_pred EeCCCCCCCEEEEEEecCCC---CCccceeEEEcCCC
Q 008312 168 RLTGLKPDTLYHYQCGDPSI---PAMSGTYCFRTMPD 201 (570)
Q Consensus 168 ~ltgL~P~T~Y~Yrvg~~~~---~~~S~~~~F~T~p~ 201 (570)
.+++|+|+|.|.+||...+. +..|++.+|.|+-.
T Consensus 677 l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~ 713 (1381)
T KOG4221|consen 677 LFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPES 713 (1381)
T ss_pred HhhcCCCCceEEEEEEEeccCCCCCcccceeccCccc
Confidence 45789999999999864432 36788899988643
No 129
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=85.15 E-value=1.7 Score=45.37 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCeEEEEccc
Q 008312 399 RVAMEDLLYKYGVDVVFNGHQ 419 (570)
Q Consensus 399 r~~l~~ll~~y~VdlvlsGH~ 419 (570)
.++++..+++.++++++=|||
T Consensus 242 ~~~~~~Fl~~n~l~~iiRgHe 262 (311)
T cd07419 242 PDRVHRFLEENDLQMIIRAHE 262 (311)
T ss_pred HHHHHHHHHHCCCeEEEEech
Confidence 468889999999999999993
No 130
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=82.92 E-value=11 Score=29.42 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=18.2
Q ss_pred EEEEEeCCCCCCCEEEEEEecC
Q 008312 164 IHHVRLTGLKPDTLYHYQCGDP 185 (570)
Q Consensus 164 ~h~v~ltgL~P~T~Y~Yrvg~~ 185 (570)
..++.|.+|.|+++|.+||..-
T Consensus 56 ~~~~~i~~l~p~~~Y~~~v~a~ 77 (93)
T cd00063 56 ETSYTLTGLKPGTEYEFRVRAV 77 (93)
T ss_pred ccEEEEccccCCCEEEEEEEEE
Confidence 4567889999999999998543
No 131
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=79.84 E-value=12 Score=43.53 Aligned_cols=37 Identities=35% Similarity=0.601 Sum_probs=30.6
Q ss_pred EEEEeCCCCCCCEEEEEEecCC---CCCccceeEEEcCCC
Q 008312 165 HHVRLTGLKPDTLYHYQCGDPS---IPAMSGTYCFRTMPD 201 (570)
Q Consensus 165 h~v~ltgL~P~T~Y~Yrvg~~~---~~~~S~~~~F~T~p~ 201 (570)
..|+|+||+|+|+|-+||..-+ -+..|....|.|.+.
T Consensus 498 ~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 498 TTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred ceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 4789999999999999986443 237889999999886
No 132
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=76.79 E-value=1.7 Score=42.32 Aligned_cols=83 Identities=12% Similarity=0.303 Sum_probs=42.6
Q ss_pred EEEEecCCCCCCh--HHHHHHHH-----hCCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHHHH---HHH
Q 008312 211 IAIVGDVGLTYNT--TSTVSHMI-----SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRW---DYW 280 (570)
Q Consensus 211 f~vigD~g~~~~~--~~~i~~l~-----~~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~~w---d~~ 280 (570)
|++++|.+...+. .+.+.++. +.+|+.+|++|+++.......... .....+.... ...
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 68 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSG------------SVPDSYSFEEDFLKEL 68 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---------------HHCCHHHHHHHHC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccc------------cccccccccHHHHHHH
Confidence 6789999887432 23344443 457999999999996432110000 0000111111 222
Q ss_pred HHhhhhhhccCCeEEeccCcccccc
Q 008312 281 GRYMQPVLSKVPIMVVEGNHEYEEQ 305 (570)
Q Consensus 281 ~~~l~~l~~~iP~~~v~GNHD~~~~ 305 (570)
.+.++.+...+.++.+||+||....
T Consensus 69 ~~~~~~i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 69 DSFLESILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp HHHHCCCHCCSEEEEE--TTCTT-S
T ss_pred HHHHhhcccccEEEEeCCCcccccc
Confidence 3445566778999999999998644
No 133
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.67 E-value=28 Score=32.27 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCeEEEEcccccceeeeeccccCccCCCCcEEEEECCC
Q 008312 400 VAMEDLLYKYGVDVVFNGHQVHAYERSNRVYNYTLDPCGPVHITVGDG 447 (570)
Q Consensus 400 ~~l~~ll~~y~VdlvlsGH~~H~YeR~~pv~n~~~~~~g~vyiv~G~g 447 (570)
+.|.-|-++.+||+.+.|| +|.++-.. -+|-.||--|++
T Consensus 97 ~sL~~LaRqldvDILl~G~-Th~f~Aye--------~eg~ffvnPGSa 135 (183)
T KOG3325|consen 97 ESLALLARQLDVDILLTGH-THKFEAYE--------HEGKFFVNPGSA 135 (183)
T ss_pred HHHHHHHHhcCCcEEEeCC-ceeEEEEE--------eCCcEEeCCCcc
Confidence 3555566788999999999 99887763 356667755554
No 134
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=76.09 E-value=14 Score=44.34 Aligned_cols=93 Identities=22% Similarity=0.230 Sum_probs=50.9
Q ss_pred CCceEEEeecCCCCceEEEEEeCcccccCCCCCCCCCCCccEEEEccCCCCCceEEEeEEEEeeeecccCCccccccCeE
Q 008312 85 EPEQISVSLSSAHDSVWISWITGEFQIGNNLKPLDPKSVVSVVRYGTRRSQLNRKATGRSLVYSQLYPFLGLQNYTSGII 164 (570)
Q Consensus 85 ~P~qi~lt~~~~p~s~~I~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~a~g~~~~y~~~~p~~g~~~~~~~~~ 164 (570)
+|..+++- +.+.++|.|+|.......|- ...=.|+|....+.. +..... ...+-.
T Consensus 822 ap~~~~~~-~~s~s~~~v~W~~~~~~nG~--------l~gY~v~Y~~~~~~~-----~~~~~~-----------~i~~~~ 876 (1051)
T KOG3513|consen 822 APTKLSAK-PLSSSEVNLSWKPPLWDNGK--------LTGYEVKYWKINEKE-----GSLSRV-----------QIAGNR 876 (1051)
T ss_pred CCccceee-cccCceEEEEecCcCccCCc--------cceeEEEEEEcCCCc-----ccccce-----------eecCCc
Confidence 35555432 33468999999654332221 123467887765543 111111 112344
Q ss_pred EEEEeCCCCCCCEEEEEEecCC---CCCccceeEEEcCCCC
Q 008312 165 HHVRLTGLKPDTLYHYQCGDPS---IPAMSGTYCFRTMPDS 202 (570)
Q Consensus 165 h~v~ltgL~P~T~Y~Yrvg~~~---~~~~S~~~~F~T~p~~ 202 (570)
-.++|+||+|+|.|++.|..-+ .+..|....-+|.+.+
T Consensus 877 ~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~tt~k~p 917 (1051)
T KOG3513|consen 877 TSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEENVTTKKAP 917 (1051)
T ss_pred ceEeeeCCCCCceEEEEEEEecCCCCCCCccceeccccCCC
Confidence 5678999999999999875332 2234444444555443
No 135
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=68.65 E-value=16 Score=42.57 Aligned_cols=123 Identities=22% Similarity=0.173 Sum_probs=71.3
Q ss_pred CCCceEEEeecC-CCCceEEEEEeCcccccCCCCCCCCCCCccEEEEccCCCCCceE-----EEeEE--EEeeeecccCC
Q 008312 84 FEPEQISVSLSS-AHDSVWISWITGEFQIGNNLKPLDPKSVVSVVRYGTRRSQLNRK-----ATGRS--LVYSQLYPFLG 155 (570)
Q Consensus 84 ~~P~qi~lt~~~-~p~s~~I~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~-----a~g~~--~~y~~~~p~~g 155 (570)
-++.-++|+... +-+++.++|....+. +. -. -..=.+.|...+..-... |-|+. ......+| ++
T Consensus 487 Ce~~~l~~~~~~~~~dsi~lrW~~~~~~-d~-r~-----llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~-~~ 558 (1025)
T KOG4258|consen 487 CEDLVLQFSSTVTSADSILLRWERYQPP-DM-RD-----LLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPP-DL 558 (1025)
T ss_pred cccceeeeeeEEeecceeEEEecccCCc-ch-hh-----hheeeEeeccCCccccceecCccccccCcceEEeccCC-cC
Confidence 356667777664 358999999987653 10 00 122357777777432221 22211 11122222 33
Q ss_pred ccccccCeEEEEEeCCCCCCCEEEEEEecCC-------CCCccceeEEEcCCCCCCCCCCeEEEEEecCC
Q 008312 156 LQNYTSGIIHHVRLTGLKPDTLYHYQCGDPS-------IPAMSGTYCFRTMPDSSSTSYPSRIAIVGDVG 218 (570)
Q Consensus 156 ~~~~~~~~~h~v~ltgL~P~T~Y~Yrvg~~~-------~~~~S~~~~F~T~p~~~~~~~~~rf~vigD~g 218 (570)
..+ ++.-....|.||+|.|.|.|-|..-. ..+.|++..++|.|...+. |+.++..++..
T Consensus 559 ~p~--~~~~~~~~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Psp--Pl~~ls~snsS 624 (1025)
T KOG4258|consen 559 IPN--DGTHPGFLLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSP--PLDVLSKSNSS 624 (1025)
T ss_pred CCc--cccccceehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCCC--cchhhhccCcc
Confidence 222 22223678999999999999875331 1278999999998875443 67776666643
No 136
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=58.93 E-value=81 Score=38.61 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=28.4
Q ss_pred EEEEEeCCCCCCCEEEEEEecCCC---CCccceeEEEcCC
Q 008312 164 IHHVRLTGLKPDTLYHYQCGDPSI---PAMSGTYCFRTMP 200 (570)
Q Consensus 164 ~h~v~ltgL~P~T~Y~Yrvg~~~~---~~~S~~~~F~T~p 200 (570)
-++.+|.||+|.|.|.|||...+. +..|+..+|+|+-
T Consensus 573 ~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tls 612 (1381)
T KOG4221|consen 573 ATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLS 612 (1381)
T ss_pred ccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEecc
Confidence 466789999999999999965442 3566788888863
No 137
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=57.74 E-value=10 Score=28.60 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=18.7
Q ss_pred EEEEEeCCCCCCCEEEEEEecC
Q 008312 164 IHHVRLTGLKPDTLYHYQCGDP 185 (570)
Q Consensus 164 ~h~v~ltgL~P~T~Y~Yrvg~~ 185 (570)
-+...|.+|+|++.|.++|..-
T Consensus 56 ~~~~~i~~L~~~~~Y~v~v~a~ 77 (83)
T smart00060 56 STSYTLTGLKPGTEYEFRVRAV 77 (83)
T ss_pred ccEEEEeCcCCCCEEEEEEEEE
Confidence 4678899999999999998644
No 138
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=55.78 E-value=30 Score=35.41 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=23.4
Q ss_pred CeEEEEEecCCCCCChHHHHHHHHhCCCCEEEEcCCccc
Q 008312 208 PSRIAIVGDVGLTYNTTSTVSHMISNRPDLILLVGDVTY 246 (570)
Q Consensus 208 ~~rf~vigD~g~~~~~~~~i~~l~~~~pDfvl~~GDl~Y 246 (570)
-.||+.++|.|.-... ++. -..-|+.+|+||...
T Consensus 61 ~~r~VcisdtH~~~~~---i~~--~p~gDvlihagdfT~ 94 (305)
T KOG3947|consen 61 YARFVCISDTHELTFD---IND--IPDGDVLIHAGDFTN 94 (305)
T ss_pred ceEEEEecCcccccCc---ccc--CCCCceEEeccCCcc
Confidence 4699999999864221 111 125689999999983
No 139
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=48.47 E-value=1.2e+02 Score=31.40 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=49.5
Q ss_pred CeEEEEEecCCCCCChHHHHHHHH---h---------CCCCEEEEcCCcccccccccCCCCCCcccccCCCCCcccchHH
Q 008312 208 PSRIAIVGDVGLTYNTTSTVSHMI---S---------NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQP 275 (570)
Q Consensus 208 ~~rf~vigD~g~~~~~~~~i~~l~---~---------~~pDfvl~~GDl~Y~d~~~~~G~~~~c~~~~~~~~~~~e~Y~~ 275 (570)
..+|+++||.+... ..+++++. + ..|-.+|+.|+++-.-.. .+. ...+.|..
T Consensus 27 ~~~~VilSDV~LD~--p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~--~~~------------~~~~~yk~ 90 (291)
T PTZ00235 27 RHNWIIMHDVYLDS--PYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFD--YNR------------NFHKVYIK 90 (291)
T ss_pred ceEEEEEEeeccCC--HHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCccc--CCC------------CchHHHHH
Confidence 46999999999863 33333332 1 138899999999853210 000 12234555
Q ss_pred HHHHHHHh-h---hhhhccCCeEEeccCcccc
Q 008312 276 RWDYWGRY-M---QPVLSKVPIMVVEGNHEYE 303 (570)
Q Consensus 276 ~wd~~~~~-l---~~l~~~iP~~~v~GNHD~~ 303 (570)
..|.+... + ..+..+.-++.|||-.|-.
T Consensus 91 ~Fd~La~llls~fp~L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 91 GFEKLSVMLISKFKLILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHHHHHHHHHHhChHHHhcCeEEEECCCCCCC
Confidence 56666542 3 2356677899999999974
No 140
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=39.07 E-value=34 Score=31.99 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=22.0
Q ss_pred EeCCCCCCCEEEEE--EecCCCCCccceeEEEcCCC
Q 008312 168 RLTGLKPDTLYHYQ--CGDPSIPAMSGTYCFRTMPD 201 (570)
Q Consensus 168 ~ltgL~P~T~Y~Yr--vg~~~~~~~S~~~~F~T~p~ 201 (570)
.+++|.|||+||.+ |..+.....|.+..-.|.|-
T Consensus 105 qVtNL~pGTkY~isY~VtkgtstESS~~i~msT~n~ 140 (184)
T PF07353_consen 105 QVTNLQPGTKYYISYLVTKGTSTESSNEIPMSTLNR 140 (184)
T ss_pred EeeccCCCcEEEEEEEEecCccceecceeccccccc
Confidence 57999999999865 55444334444555556554
No 141
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=36.30 E-value=48 Score=35.04 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCeEEEEcc
Q 008312 399 RVAMEDLLYKYGVDVVFNGH 418 (570)
Q Consensus 399 r~~l~~ll~~y~VdlvlsGH 418 (570)
.+.+++.+.+.++|+++-||
T Consensus 233 ~~~v~~f~~~~~ldlivRaH 252 (331)
T KOG0374|consen 233 PAVVEDFCKKLDLDLIVRAH 252 (331)
T ss_pred HHHHHHHHHHhCcceEEEcC
Confidence 46788889999999999999
No 142
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=29.78 E-value=63 Score=28.30 Aligned_cols=23 Identities=43% Similarity=0.788 Sum_probs=20.3
Q ss_pred CeEEEEEeCCCCCCCEEEEEEec
Q 008312 162 GIIHHVRLTGLKPDTLYHYQCGD 184 (570)
Q Consensus 162 ~~~h~v~ltgL~P~T~Y~Yrvg~ 184 (570)
+-++++.+.++.+|+.|-|||..
T Consensus 48 ~gvW~~~v~~~~~g~~Y~y~v~g 70 (119)
T cd02852 48 GDVWHVFVEGLKPGQLYGYRVDG 70 (119)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 45788999999999999999974
No 143
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=28.90 E-value=69 Score=27.32 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.1
Q ss_pred CeEEEEEeCCCCCCCEEEEEEec
Q 008312 162 GIIHHVRLTGLKPDTLYHYQCGD 184 (570)
Q Consensus 162 ~~~h~v~ltgL~P~T~Y~Yrvg~ 184 (570)
+-+.++.+.++.+|+.|.|||..
T Consensus 44 ~GvW~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 44 GGVWHGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 45788999999999999999964
No 144
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=27.46 E-value=1.1e+02 Score=31.01 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=19.7
Q ss_pred EEEEecCCCCCChHHHHHHHH--hCCC-CEEEEcCCcccc
Q 008312 211 IAIVGDVGLTYNTTSTVSHMI--SNRP-DLILLVGDVTYA 247 (570)
Q Consensus 211 f~vigD~g~~~~~~~~i~~l~--~~~p-Dfvl~~GDl~Y~ 247 (570)
+.+.||+|.. ....++-+. ..-| .=-+++||++..
T Consensus 45 vtvcGDIHGQ--f~Dllelf~igG~~~~t~YLFLGDyVDR 82 (303)
T KOG0372|consen 45 VTVCGDIHGQ--FYDLLELFRIGGDVPETNYLFLGDYVDR 82 (303)
T ss_pred cEEeecccch--HHHHHHHHHhCCCCCCCceEeecchhcc
Confidence 5689999974 223332222 1112 235678999964
No 145
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=26.11 E-value=95 Score=31.59 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=21.4
Q ss_pred EEEEecCCCCCChHHHHHHHH--hCCCCE-EEEcCCcccc
Q 008312 211 IAIVGDVGLTYNTTSTVSHMI--SNRPDL-ILLVGDVTYA 247 (570)
Q Consensus 211 f~vigD~g~~~~~~~~i~~l~--~~~pDf-vl~~GDl~Y~ 247 (570)
+.+.||.|... ...++.+. ...||. .++.||++..
T Consensus 62 vtvcGDvHGqf--~dl~ELfkiGG~~pdtnylfmGDyvdr 99 (319)
T KOG0371|consen 62 VTVCGDVHGQF--HDLIELFKIGGLAPDTNYLFMGDYVDR 99 (319)
T ss_pred eEEecCcchhH--HHHHHHHHccCCCCCcceeeeeeeccc
Confidence 67899999753 33333332 235553 5678999953
No 146
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=26.00 E-value=78 Score=26.75 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=20.5
Q ss_pred CeEEEEEeCCCCCCCEEEEEEecC
Q 008312 162 GIIHHVRLTGLKPDTLYHYQCGDP 185 (570)
Q Consensus 162 ~~~h~v~ltgL~P~T~Y~Yrvg~~ 185 (570)
+-++++.+.++.+|+.|.|||...
T Consensus 46 ~gvw~~~v~~~~~g~~Y~y~i~~~ 69 (100)
T cd02860 46 NGVWSVTLDGDLEGYYYLYEVKVY 69 (100)
T ss_pred CCEEEEEeCCccCCcEEEEEEEEe
Confidence 457889999999999999999643
No 147
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=25.40 E-value=83 Score=25.78 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.2
Q ss_pred eEEEEEeCCCCCCCEEEEEEec
Q 008312 163 IIHHVRLTGLKPDTLYHYQCGD 184 (570)
Q Consensus 163 ~~h~v~ltgL~P~T~Y~Yrvg~ 184 (570)
-++++.+.++ +++.|.|++..
T Consensus 40 G~W~~~v~~~-~g~~Y~y~v~~ 60 (85)
T cd02853 40 GWFEAEVPGA-AGTRYRYRLDD 60 (85)
T ss_pred cEEEEEeCCC-CCCeEEEEECC
Confidence 4678899999 99999999973
No 148
>PF15284 PAGK: Phage-encoded virulence factor
Probab=25.11 E-value=97 Score=24.21 Aligned_cols=45 Identities=27% Similarity=0.396 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcccccc-ccccCCCCCCCccccCCCCCCCCCCCCCCC
Q 008312 24 LVLTLTITSILLANGAMAM-AIPTTLDGPFKPVTIPLDESFRGNAIDLPD 72 (570)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 72 (570)
|.|++.|++++.+|++-++ +-+.-..+-..|+ |=+ +-..|+.+|.
T Consensus 9 L~l~~~LsA~~FSasamAa~~~~~~~~~~~~P~--wC~--lwP~g~~iP~ 54 (61)
T PF15284_consen 9 LALVFILSAAGFSASAMAADSSPHRKPANIKPV--WCD--LWPAGIPIPE 54 (61)
T ss_pred HHHHHHHHHhhhhHHHHHHhhCCCCCCcCCCCh--HHh--cCCCCCCCCc
Confidence 4455555555555443332 2222222223444 333 3355666664
No 149
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=23.67 E-value=75 Score=26.84 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=14.9
Q ss_pred EEEeCCCCCCCEEEEEEec
Q 008312 166 HVRLTGLKPDTLYHYQCGD 184 (570)
Q Consensus 166 ~v~ltgL~P~T~Y~Yrvg~ 184 (570)
.+.|.+|+|+|.|..+|..
T Consensus 68 ~~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 68 SVTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp EEEEES--TTSEEEEEEEE
T ss_pred EEEEeCCCCCCCEEEEEEE
Confidence 4679999999999999875
No 150
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=22.90 E-value=4.3e+02 Score=22.42 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCeEEEEcc
Q 008312 399 RVAMEDLLYKYGVDVVFNGH 418 (570)
Q Consensus 399 r~~l~~ll~~y~VdlvlsGH 418 (570)
.+.+.+..+++++|+++-|+
T Consensus 74 ~~~I~~~~~~~~~dllviG~ 93 (124)
T cd01987 74 AEAIVEFAREHNVTQIVVGK 93 (124)
T ss_pred HHHHHHHHHHcCCCEEEeCC
Confidence 46777888999999999998
No 151
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=21.16 E-value=73 Score=32.60 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=33.3
Q ss_pred HHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCe-EEEEcccccc
Q 008312 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVD-VVFNGHQVHA 422 (570)
Q Consensus 359 ~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~Vd-lvlsGH~~H~ 422 (570)
+.|+.-|+...+-..| ++-.|.| ...+-+.+.+|+++|++| |||.|| +-.
T Consensus 115 ~YL~~Cl~~Ykql~i~--a~G~~~~-----------E~eqp~~i~~Ll~~~~PDIlViTGH-D~~ 165 (283)
T TIGR02855 115 EYLRKCLKLYKKIGVP--VVGIHCK-----------EKEMPEKVLDLIEEVRPDILVITGH-DAY 165 (283)
T ss_pred HHHHHHHHHHHHhCCc--eEEEEec-----------chhchHHHHHHHHHhCCCEEEEeCc-hhh
Confidence 4588888776544433 3333322 124567889999999999 699999 744
No 152
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=20.75 E-value=90 Score=32.09 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=33.6
Q ss_pred HHHHHHHhccccCCCCEEEEEeCCCccccCCCcccchHHHHHHHHHHHHHcCCe-EEEEcccccc
Q 008312 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVD-VVFNGHQVHA 422 (570)
Q Consensus 359 ~WLe~~L~~~~r~~~pwiIV~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~y~Vd-lvlsGH~~H~ 422 (570)
+.|+.-|+-..+-..| ..-.|.| ...+-+.+.+||.+++.| |||.|| +=.
T Consensus 116 ~YL~~Cl~~Ykql~i~--a~G~~~~-----------E~eqp~~i~~Ll~~~~PDIlViTGH-D~~ 166 (287)
T PF05582_consen 116 EYLNKCLKVYKQLGIP--AVGIHVP-----------EKEQPEKIYRLLEEYRPDILVITGH-DGY 166 (287)
T ss_pred HHHHHHHHHHHHcCCc--eEEEEec-----------hHHhhHHHHHHHHHcCCCEEEEeCc-hhh
Confidence 4588888766543332 2222322 235678899999999999 699999 764
No 153
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=20.34 E-value=84 Score=32.70 Aligned_cols=18 Identities=44% Similarity=0.717 Sum_probs=15.0
Q ss_pred EEEeCCCCCCCEEEEEEe
Q 008312 166 HVRLTGLKPDTLYHYQCG 183 (570)
Q Consensus 166 ~v~ltgL~P~T~Y~Yrvg 183 (570)
.-+|.+|+|+|+||+-|-
T Consensus 16 ~~t~~~L~p~t~YyfdVF 33 (300)
T PF10179_consen 16 NQTLSGLKPDTTYYFDVF 33 (300)
T ss_pred eEEeccCCCCCeEEEEEE
Confidence 446789999999999863
Done!